HHsearch alignment for GI: 254780693 and conserved domain: PRK09210

>PRK09210 RNA polymerase sigma factor RpoD; Validated.
Probab=96.04  E-value=0.11  Score=31.10  Aligned_cols=52  Identities=27%  Similarity=0.315  Sum_probs=45.4

Q ss_pred             CCCHHHHHHHHHHH-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             49989999999998-----79997899999499988999999999998079978999
Q gi|254780693|r  173 NLTERETSCLQLAG-----DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA  224 (235)
Q Consensus       173 ~LT~RE~evL~l~a-----~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qa  224 (235)
T Consensus       306 ~L~~REr~Il~~RfGL~~~~~~TLeEIg~~lgvSRERVRQIE~kAL~KLR~~~~~~~  362 (368)
T PRK09210        306 TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ  362 (368)
T ss_pred             CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf             799999999999759996896149999989697989999999999999767368789