HHsearch alignment for GI: 254780693 and conserved domain: PRK09210
>PRK09210 RNA polymerase sigma factor RpoD; Validated.
Probab=96.04 E-value=0.11 Score=31.10 Aligned_cols=52 Identities=27% Similarity=0.315 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHHH-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 49989999999998-----79997899999499988999999999998079978999
Q gi|254780693|r 173 NLTERETSCLQLAG-----DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 (235)
Q Consensus 173 ~LT~RE~evL~l~a-----~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qa 224 (235)
T Consensus 306 ~L~~REr~Il~~RfGL~~~~~~TLeEIg~~lgvSRERVRQIE~kAL~KLR~~~~~~~ 362 (368)
T PRK09210 306 TLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQ 362 (368)
T ss_pred CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 799999999999759996896149999989697989999999999999767368789