HHsearch alignment for GI: 254780693 and conserved domain: PRK09635
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional.
Probab=96.66 E-value=0.024 Score=35.85 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=43.0
Q ss_pred CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 499899999999-987999789999949998899999999999807997
Q gi|254780693|r 173 NLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 (235)
Q Consensus 173 ~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~n 220 (235)
T Consensus 118 ~L~P~eRaa~vLrdvfg~~~~EIA~~Lg~s~~a~Rqll~RAR~~l~~~~ 166 (290)
T PRK09635 118 RLGPAERVVFVLHEIFGLPYQQIATTIGSQASTCRQLAHRARRKINESR 166 (290)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 2998685455269860898899999968998999999999999873238