HHsearch alignment for GI: 254780693 and conserved domain: PRK09638
>PRK09638 RNA polymerase sigma factor SigY; Reviewed.
Probab=97.94 E-value=2.5e-05 Score=57.15 Aligned_cols=46 Identities=30% Similarity=0.315 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 44998999999999-87999789999949998899999999999807
Q gi|254780693|r 172 RNLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 172 ~~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 126 ~~Lp~~~r~v~~L~~~eg~s~~EIA~~l~is~~tVk~~l~rA~~~Lr 172 (177)
T PRK09638 126 MKLPPELRAPFILKHYYGYTYEEIAKMLGIPEGTVKSRVHHGLKKIR 172 (177)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 75999898999999991999999999989399999999999999999