HHsearch alignment for GI: 254780693 and conserved domain: PRK09638

>PRK09638 RNA polymerase sigma factor SigY; Reviewed.
Probab=97.94  E-value=2.5e-05  Score=57.15  Aligned_cols=46  Identities=30%  Similarity=0.315  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             44998999999999-87999789999949998899999999999807
Q gi|254780693|r  172 RNLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       172 ~~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       126 ~~Lp~~~r~v~~L~~~eg~s~~EIA~~l~is~~tVk~~l~rA~~~Lr  172 (177)
T PRK09638        126 MKLPPELRAPFILKHYYGYTYEEIAKMLGIPEGTVKSRVHHGLKKIR  172 (177)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             75999898999999991999999999989399999999999999999