HHsearch alignment for GI: 254780693 and conserved domain: PRK09639
>PRK09639 RNA polymerase sigma factor SigX; Provisional.
Probab=97.94 E-value=2.3e-05 Score=57.39 Aligned_cols=45 Identities=36% Similarity=0.519 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 499899999999987999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 112 ~Lp~~~r~v~~l~~~g~s~~EIA~~l~is~~tVk~~l~RA~~~Lr 156 (166)
T PRK09639 112 KMTERDRTVLLLRFSGYSYKEIAQALGIDESSVGTTLHRAKKKFR 156 (166)
T ss_pred HCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 399999999999993899999999989199999999999999999