HHsearch alignment for GI: 254780693 and conserved domain: PRK09641

>PRK09641 RNA polymerase sigma factor SigW; Provisional.
Probab=97.86  E-value=3.9e-05  Score=55.76  Aligned_cols=45  Identities=24%  Similarity=0.304  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       136 ~Lp~~~r~v~~L~~~~~~s~~EIA~~l~is~~tVk~~l~RAr~~Lr  181 (187)
T PRK09641        136 QLPDKYRTVIVLKYIEELSLKEISEILDLPVGTVKTRIHRGREALR  181 (187)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             2898888999999982998999999989399999999999999999