HHsearch alignment for GI: 254780693 and conserved domain: PRK09641
>PRK09641 RNA polymerase sigma factor SigW; Provisional.
Probab=97.86 E-value=3.9e-05 Score=55.76 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999-87999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 136 ~Lp~~~r~v~~L~~~~~~s~~EIA~~l~is~~tVk~~l~RAr~~Lr 181 (187)
T PRK09641 136 QLPDKYRTVIVLKYIEELSLKEISEILDLPVGTVKTRIHRGREALR 181 (187)
T ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 2898888999999982998999999989399999999999999999