HHsearch alignment for GI: 254780693 and conserved domain: PRK09642

>PRK09642 RNA polymerase sigma factor SigW; Reviewed.
Probab=97.66  E-value=0.00014  Score=51.79  Aligned_cols=45  Identities=22%  Similarity=0.141  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       106 ~Lp~~~R~v~~L~~~e~~s~~EIA~~l~is~~tVk~~l~RArk~Lk  151 (160)
T PRK09642        106 ELPENYRDVVLAHYLEEKSYQEIALQENIEVKTVEMKLYRARKWIK  151 (160)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             7999999997999982999999999989199999999999999999