HHsearch alignment for GI: 254780693 and conserved domain: PRK09645
>PRK09645 RNA polymerase sigma factor SigL; Provisional.
Probab=97.98 E-value=1.9e-05 Score=57.99 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 44998999999999-87999789999949998899999999999807
Q gi|254780693|r 172 RNLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 172 ~~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 115 ~~L~~~~r~v~~l~~~~g~s~~EIA~~l~is~~tVk~~l~ra~~~Lr 161 (171)
T PRK09645 115 AQLSPEHRAVLVRSYYRGWSTAQIAADLGIPEGTVKSRLHYAVRALR 161 (171)
T ss_pred HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 75999988798999986999999999989299999999999999999