HHsearch alignment for GI: 254780693 and conserved domain: PRK09646

>PRK09646 RNA polymerase sigma factor SigK; Reviewed.
Probab=98.04  E-value=1.1e-05  Score=59.80  Aligned_cols=45  Identities=29%  Similarity=0.428  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             44998999999999-8799978999994999889999999999980
Q gi|254780693|r  172 RNLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL  216 (235)
Q Consensus       172 ~~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  216 (235)
T Consensus       141 ~~Lp~~~R~vi~L~~~~g~s~~EIA~~Lgis~~TVk~rl~rA~~~L  186 (194)
T PRK09646        141 DALTDTQREAITLAYYGGLTYREVAERLAVPLGTVKTRMRDGLRRL  186 (194)
T ss_pred             HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             8678157899999999399999999998919999999999999999