HHsearch alignment for GI: 254780693 and conserved domain: PRK09646
>PRK09646 RNA polymerase sigma factor SigK; Reviewed.
Probab=98.04 E-value=1.1e-05 Score=59.80 Aligned_cols=45 Identities=29% Similarity=0.428 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 44998999999999-8799978999994999889999999999980
Q gi|254780693|r 172 RNLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 172 ~~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
T Consensus 141 ~~Lp~~~R~vi~L~~~~g~s~~EIA~~Lgis~~TVk~rl~rA~~~L 186 (194)
T PRK09646 141 DALTDTQREAITLAYYGGLTYREVAERLAVPLGTVKTRMRDGLRRL 186 (194)
T ss_pred HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 8678157899999999399999999998919999999999999999