HHsearch alignment for GI: 254780693 and conserved domain: PRK09648

>PRK09648 RNA polymerase sigma factor SigD; Reviewed.

Probab=97.81  E-value=6e-05  Score=54.43  Aligned_cols=46  Identities=28%  Similarity=0.287  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             44998999999999-87999789999949998899999999999807
Q gi|254780693|r  172 RNLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       172 ~~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       136 ~~Lp~~~R~vl~L~~~~g~s~~EIA~~lg~s~~tVk~~l~RA~~~Lr  182 (187)
T PRK09648        136 EILPEKQREILILRVVVGLSAEETAEAVGSTPGAVRVAQHRALSRLR  182 (187)
T ss_pred             HHCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             83999999999999984999999999989399999999999999999