HHsearch alignment for GI: 254780693 and conserved domain: PRK09649

>PRK09649 RNA polymerase sigma factor SigC; Reviewed.

Probab=97.61  E-value=0.00019  Score=50.92  Aligned_cols=46  Identities=26%  Similarity=0.237  Sum_probs=42.8

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf             4998999999999-879997899999499988999999999998079
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA  218 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~  218 (235)
T Consensus       130 ~Lp~~~R~vl~L~~~egls~~EIA~~lg~~~gTVKsRl~RAR~~L~a  176 (185)
T PRK09649        130 DLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLA  176 (185)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             49999999999899729999999999893999999999999999997