HHsearch alignment for GI: 254780693 and conserved domain: PRK09652
>PRK09652 RNA polymerase sigma factor RpoE; Provisional.
Probab=97.96 E-value=2.1e-05 Score=57.63 Aligned_cols=45 Identities=31% Similarity=0.373 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999-87999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 137 ~L~~~~r~v~~l~~~~~~s~~EIA~~lgis~~tVk~~l~Ra~~~Lr 182 (192)
T PRK09652 137 SLPEELRTAITLREIEGLSYEEIAEIMGCPIGTVRSRIFRAREALR 182 (192)
T ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 3999999888899972999999999989399999999999999999