HHsearch alignment for GI: 254780693 and conserved domain: PRK11922

>PRK11922 RNA polymerase sigma factor; Provisional.
Probab=98.01  E-value=1.6e-05  Score=58.51  Aligned_cols=44  Identities=30%  Similarity=0.302  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             4998999999999-8799978999994999889999999999980
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL  216 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  216 (235)
T Consensus       149 ~Lp~~~R~v~~L~~~eglS~~EIA~~Lgis~~TVKsrL~RArk~L  193 (231)
T PRK11922        149 ALPDAFRAVFVLRVVEELSVEETAQALGLPEETVKTRLHRARRLL  193 (231)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             099999999999999399999999998939999999999999999