HHsearch alignment for GI: 254780693 and conserved domain: PRK11922
>PRK11922 RNA polymerase sigma factor; Provisional.
Probab=98.01 E-value=1.6e-05 Score=58.51 Aligned_cols=44 Identities=30% Similarity=0.302 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 4998999999999-8799978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
T Consensus 149 ~Lp~~~R~v~~L~~~eglS~~EIA~~Lgis~~TVKsrL~RArk~L 193 (231)
T PRK11922 149 ALPDAFRAVFVLRVVEELSVEETAQALGLPEETVKTRLHRARRLL 193 (231)
T ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 099999999999999399999999998939999999999999999