HHsearch alignment for GI: 254780693 and conserved domain: PRK12511

>PRK12511 RNA polymerase sigma factor; Provisional.
Probab=97.73  E-value=3.6e-05  Score=56.04  Aligned_cols=45  Identities=29%  Similarity=0.482  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       111 ~Lp~~~R~vl~L~~~egls~~EIAe~Lgis~gTVKsrl~RAr~~LR  156 (182)
T PRK12511        111 DLPEEQRAALHLVAIEGLSYQEAANVLGIPIGTLMSRIGRARAALR  156 (182)
T ss_pred             CCCHHHHHHEEEEEECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             6999895011241007999999999989399999999999999999