HHsearch alignment for GI: 254780693 and conserved domain: PRK12512
>PRK12512 RNA polymerase sigma factor; Provisional.
Probab=97.91 E-value=3.2e-05 Score=56.36 Aligned_cols=46 Identities=30% Similarity=0.325 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 499899999999-9879997899999499988999999999998079
Q gi|254780693|r 173 NLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 173 ~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~ 218 (235)
T Consensus 131 ~Lp~~~R~vi~L~~~~g~s~~EIA~~lgis~~tVk~~l~RA~~~Lr~ 177 (184)
T PRK12512 131 TLPPRQRDVVQSIAVEGASIKETAAKLSMSEGAVRVALHRGLAALAA 177 (184)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999999999998559799999999891999999999999999999