HHsearch alignment for GI: 254780693 and conserved domain: PRK12515

>PRK12515 RNA polymerase sigma factor; Provisional.
Probab=97.94  E-value=3.8e-05  Score=55.87  Aligned_cols=57  Identities=23%  Similarity=0.236  Sum_probs=50.0

Q ss_pred             CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf             499899999999-9879997899999499988999999999998079978999999997699
Q gi|254780693|r  173 NLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY  233 (235)
Q Consensus       173 ~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gl  233 (235)
T Consensus       131 ~L~~~~R~vi~l~~~e~~s~~EIA~~lgis~~tV~~~l~RAr~~L----r~~L~~~g~~~g~  188 (189)
T PRK12515        131 KLSPAHREIIDLVYYHEKSVEEVGEIVGIPESTVKTRMFYARKKL----AELLKAAGVERGW  188 (189)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH----HHHHHHHCCCCCC
T ss_conf             599999999999998499999999998929999999999999999----9999972833589