HHsearch alignment for GI: 254780693 and conserved domain: PRK12515
>PRK12515 RNA polymerase sigma factor; Provisional.
Probab=97.94 E-value=3.8e-05 Score=55.87 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 499899999999-9879997899999499988999999999998079978999999997699
Q gi|254780693|r 173 NLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 (235)
Q Consensus 173 ~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gl 233 (235)
T Consensus 131 ~L~~~~R~vi~l~~~e~~s~~EIA~~lgis~~tV~~~l~RAr~~L----r~~L~~~g~~~g~ 188 (189)
T PRK12515 131 KLSPAHREIIDLVYYHEKSVEEVGEIVGIPESTVKTRMFYARKKL----AELLKAAGVERGW 188 (189)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH----HHHHHHHCCCCCC
T ss_conf 599999999999998499999999998929999999999999999----9999972833589