HHsearch alignment for GI: 254780693 and conserved domain: PRK12519

>PRK12519 RNA polymerase sigma factor; Provisional.

Probab=97.96  E-value=2e-05  Score=57.89  Aligned_cols=46  Identities=33%  Similarity=0.474  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4499899999999-987999789999949998899999999999807
Q gi|254780693|r  172 RNLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       172 ~~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       140 ~~Lp~~~R~v~~L~~~eg~s~~EIA~~lgis~~tVk~rl~rA~~~Lr  186 (194)
T PRK12519        140 AQLPESQRQVLELAYYEGLSQSEIAKRLGIPLGTVKARARQGLLKLR  186 (194)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             81998875688999981999999999989499999999999999999