HHsearch alignment for GI: 254780693 and conserved domain: PRK12523

>PRK12523 RNA polymerase sigma factor; Reviewed.

Probab=98.16  E-value=5.6e-06  Score=61.81  Aligned_cols=45  Identities=31%  Similarity=0.459  Sum_probs=41.9

Q ss_pred             CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             4499899999999-98799978999994999889999999999980
Q gi|254780693|r  172 RNLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL  216 (235)
Q Consensus       172 ~~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  216 (235)
T Consensus       118 ~~Lp~~~R~v~~L~~~eGls~~EIA~~LgiS~~tVk~~l~rAl~~~  163 (172)
T PRK12523        118 GKLSSKARAAFLYNRLDGMGHAEIAERLGVSVSRVRQYLAQGLRQC  163 (172)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             6499999999999999399999999998939999999999999999