HHsearch alignment for GI: 254780693 and conserved domain: PRK12525

>PRK12525 RNA polymerase sigma factor; Provisional.
Probab=98.05  E-value=1.2e-05  Score=59.47  Aligned_cols=44  Identities=25%  Similarity=0.405  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             4998999999999-8799978999994999889999999999980
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL  216 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  216 (235)
T Consensus       118 ~LP~~~R~vflL~~~eGlsy~EIAe~LgIS~~tV~~~l~rAl~~c  162 (168)
T PRK12525        118 GLSGKARAAFLMSQLEGLTYVEIGERLGVSLSRIHQYMVEAFKCC  162 (168)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             399999999999999299999999998979999999999999999