HHsearch alignment for GI: 254780693 and conserved domain: PRK12525
>PRK12525 RNA polymerase sigma factor; Provisional.
Probab=98.05 E-value=1.2e-05 Score=59.47 Aligned_cols=44 Identities=25% Similarity=0.405 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 4998999999999-8799978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
T Consensus 118 ~LP~~~R~vflL~~~eGlsy~EIAe~LgIS~~tV~~~l~rAl~~c 162 (168)
T PRK12525 118 GLSGKARAAFLMSQLEGLTYVEIGERLGVSLSRIHQYMVEAFKCC 162 (168)
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 399999999999999299999999998979999999999999999