HHsearch alignment for GI: 254780693 and conserved domain: PRK12528

>PRK12528 RNA polymerase sigma factor; Provisional.

Probab=97.85  E-value=4.7e-05  Score=55.23  Aligned_cols=45  Identities=33%  Similarity=0.448  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             4499899999999-98799978999994999889999999999980
Q gi|254780693|r  172 RNLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL  216 (235)
Q Consensus       172 ~~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  216 (235)
T Consensus       118 ~~LP~~~R~vf~L~r~~gls~~EIA~~LgiS~~tVk~~l~rA~~~c  163 (167)
T PRK12528        118 DGLPPLVKRAFLLAQVDGLGYGEIATELGISLATVKRYLNKAAMRC  163 (167)
T ss_pred             HCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             7099999999999998298999999997979999999999999999