HHsearch alignment for GI: 254780693 and conserved domain: PRK12529

>PRK12529 RNA polymerase sigma factor; Provisional.
Probab=97.91  E-value=3.1e-05  Score=56.45  Aligned_cols=44  Identities=30%  Similarity=0.453  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf             44998999999999-879997899999499988999999999998
Q gi|254780693|r  172 RNLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVK  215 (235)
Q Consensus       172 ~~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~K  215 (235)
T Consensus       126 ~~Lp~r~R~vF~L~r~eGls~~EIAe~LgiS~~tV~~~l~rAl~~  170 (178)
T PRK12529        126 DTLRPRVKQAFLMATLDGMKQKDIAQALDIALPTVKKYIHQAYVT  170 (178)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             569978889987998829999999999895999999999999999