HHsearch alignment for GI: 254780693 and conserved domain: PRK12532

>PRK12532 RNA polymerase sigma factor; Provisional.
Probab=97.61  E-value=0.00018  Score=51.02  Aligned_cols=45  Identities=27%  Similarity=0.377  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       136 ~Lp~~~R~vl~L~~~egls~~EIA~~lgis~~tVks~l~RAR~~Lr  181 (195)
T PRK12532        136 NLPENTARVFTLKEILGFSSDEIQQMCGISTSNYHTIMHRARESLR  181 (195)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             5999998999999981999999999989599999999999999999