HHsearch alignment for GI: 254780693 and conserved domain: PRK12533

>PRK12533 RNA polymerase sigma factor; Provisional.

Probab=97.76  E-value=8e-05  Score=53.56  Aligned_cols=45  Identities=27%  Similarity=0.222  Sum_probs=42.2

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       137 ~Lp~~~R~vl~Lr~~eglS~~EIAeiLgip~gTVKSRL~RAR~~Lr  182 (217)
T PRK12533        137 KLPVEYREVLVLRELEDMSYREIAAIADVPVGTVMSRLARARRRLA  182 (217)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             0999886899999980999999999989499999999999999999