HHsearch alignment for GI: 254780693 and conserved domain: PRK12534

>PRK12534 RNA polymerase sigma factor; Provisional.
Probab=97.85  E-value=4.8e-05  Score=55.15  Aligned_cols=45  Identities=24%  Similarity=0.361  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       137 ~L~~~~r~vi~l~~~eg~s~~EIA~~l~i~~gTVksrl~ra~~~Lr  182 (187)
T PRK12534        137 ELEPPRSELIRTAFFEGITYEELAARTDTPIGTVKSWIRRGLAKLK  182 (187)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             6899899999999984999999999989199999999999999999