HHsearch alignment for GI: 254780693 and conserved domain: PRK12537
>PRK12537 RNA polymerase sigma factor; Provisional.
Probab=97.93 E-value=2.6e-05 Score=56.99 Aligned_cols=45 Identities=31% Similarity=0.499 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999-87999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 135 ~L~~~~r~~i~l~~~eg~s~~EIA~~l~is~~TVk~rl~rA~~~LR 180 (184)
T PRK12537 135 QLEPARRNCILHAYVDGCSHAEIAQRLGAPLGTVKAWIKRSLKALR 180 (184)
T ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 0999899999998843999999999989299999999999999999