HHsearch alignment for GI: 254780693 and conserved domain: PRK12540

>PRK12540 RNA polymerase sigma factor; Provisional.

Probab=97.69  E-value=0.00011  Score=52.43  Aligned_cols=45  Identities=27%  Similarity=0.417  Sum_probs=42.8

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       111 ~Lp~~~R~vl~L~~~egls~~EIA~iL~is~gTVKsRL~RAr~kLr  156 (181)
T PRK12540        111 KLPQDQREALILVGASGFSYEDAAAICGCAVGTIKSRVNRARSKLS  156 (181)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             1999998998879980999999999989499999999999999999