HHsearch alignment for GI: 254780693 and conserved domain: PRK12541

>PRK12541 RNA polymerase sigma factor; Provisional.

Probab=97.90  E-value=3.3e-05  Score=56.27  Aligned_cols=45  Identities=29%  Similarity=0.313  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       112 ~Lp~~~R~v~~L~~~~g~s~~EIA~~lgis~~tVk~~l~RArk~Lr  157 (161)
T PRK12541        112 SLPLERRNVLLLRDYYGFSYKEIAEMTGLSLAKVKIELHRGRKETK  157 (161)
T ss_pred             CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             1999999999989974999999999989399999999999999998