HHsearch alignment for GI: 254780693 and conserved domain: PRK12547
>PRK12547 RNA polymerase sigma factor; Provisional.
Probab=97.86 E-value=4.5e-05 Score=55.33 Aligned_cols=45 Identities=27% Similarity=0.384 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999-87999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
T Consensus 112 ~Lp~~~r~v~~L~~~~g~s~~EIA~~lgis~~tVksrl~rAr~~Lr 157 (164)
T PRK12547 112 LLPADQREAIILIGASGFSYEEAAEICGCAVGTIKSRVSRARNRLQ 157 (164)
T ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 5899999999989984999999999989399999999999999999