HHsearch alignment for GI: 254780693 and conserved domain: PRK12547

>PRK12547 RNA polymerase sigma factor; Provisional.
Probab=97.86  E-value=4.5e-05  Score=55.33  Aligned_cols=45  Identities=27%  Similarity=0.384  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             4998999999999-87999789999949998899999999999807
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus       112 ~Lp~~~r~v~~L~~~~g~s~~EIA~~lgis~~tVksrl~rAr~~Lr  157 (164)
T PRK12547        112 LLPADQREAIILIGASGFSYEEAAEICGCAVGTIKSRVSRARNRLQ  157 (164)
T ss_pred             HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf             5899999999989984999999999989399999999999999999