>TIGR02954 Sig70_famx3 RNA polymerase sigma-70 factor, TIGR02954 family; InterPro: IPR014300 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . This group of sigma factors appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This entry is found in certain Bacillus and Clostridium species.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.

Probab=95.12  E-value=0.015  Score=37.45  Aligned_cols=37  Identities=35%  Similarity=0.372  Sum_probs=32.0

Q ss_pred             HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf             99999879997899999499988999999999998079
Q gi|254780693|r  181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA  218 (235)
Q Consensus       181 vL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~  218 (235)
T Consensus       132 IL~Yy~D-L~I~eIa~vM~~P~gTvKtyl~Ra~~~lk~  168 (173)
T TIGR02954       132 ILRYYHD-LKIKEIAEVMNKPEGTVKTYLRRAKKKLKK  168 (173)
T ss_pred             HHHHCCC-CCHHHHHHHCCCCCCCHHHHHHHHHHHHHH
T ss_conf             4332179-984259985168985178999999999888