HHsearch alignment for GI: 254780693 and conserved domain: TIGR02997

>TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family.
Probab=95.54  E-value=0.12  Score=30.83  Aligned_cols=44  Identities=41%  Similarity=0.475  Sum_probs=39.5

Q ss_pred             CCCHHHHHHHHH-----HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             499899999999-----98799978999994999889999999999980
Q gi|254780693|r  173 NLTERETSCLQL-----AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL  216 (235)
Q Consensus       173 ~LT~RE~evL~l-----~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  216 (235)
T Consensus       287 ~L~p~e~~VL~LRfGL~~~~~~TL~eiG~~l~lSRERVRQiE~~AL~kL  335 (336)
T TIGR02997       287 ELTPRERQVLRLRFGLDDGEPLTLAEIGERLNLSRERVRQIEAKALRKL  335 (336)
T ss_pred             HCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf             3798899999985789989753278999883883688889999997534