HHsearch alignment for GI: 254780693 and conserved domain: TIGR02997
>TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family.
Probab=95.54 E-value=0.12 Score=30.83 Aligned_cols=44 Identities=41% Similarity=0.475 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHH-----HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 499899999999-----98799978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQL-----AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l-----~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
T Consensus 287 ~L~p~e~~VL~LRfGL~~~~~~TL~eiG~~l~lSRERVRQiE~~AL~kL 335 (336)
T TIGR02997 287 ELTPRERQVLRLRFGLDDGEPLTLAEIGERLNLSRERVRQIEAKALRKL 335 (336)
T ss_pred HCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 3798899999985789989753278999883883688889999997534