HHsearch alignment for GI: 254780693 and conserved domain: pfam03472

>pfam03472 Autoind_bind Autoinducer binding domain. This domain is found a a large family of transcriptional regulators. This domain specifically binds to autoinducer molecules.

Probab=99.31  E-value=2.6e-10  Score=92.66  Aligned_cols=129  Identities=16%  Similarity=0.052  Sum_probs=103.6

Q ss_pred             CHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCH
Q ss_conf             59999999999999858378589984177787310250442278778999624874441208799999617998373101
Q gi|254780693|r   13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI   92 (235)
Q Consensus        13 sl~dl~~~l~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~   92 (235)
T Consensus         1 ~~~~l~~~l~~~~~~lGf~~~~y~~~~~---~~~~~~~~~~~~~yP~~W~~~Y~~~~y~~~DPv~~~~~~~~~p~~W~~~   77 (146)
T pfam03472         1 SEEELWDLLERLAAALGFDYFAYGLLPP---SPGSRPDVLLLSNYPAEWVERYVEEGYYRIDPVVRHALRSSTPFSWSDL   77 (146)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEEEECC---CCCCCCCEEEEECCCHHHHHHHHHCCCEECCHHHHHHHCCCCCEECCCC
T ss_conf             9799999999999976998799974358---9899876799708999999999977955508799998628999887768


Q ss_pred             HHHCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf             3314667213678996542585535899721688752345410588789989999
Q gi|254780693|r   93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII  147 (235)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~  147 (235)
T Consensus        78 ~~---~~~~~~~~~~~a~~~Gl~~G~~~pv~~~~g~~g~~s~a~~~~~~~~~~~~  129 (146)
T pfam03472        78 DL---ASPRARRVFDEARDFGLRAGYTVPVHGPNGRLGALSLAGDGRDLDAVELI  129 (146)
T ss_pred             CC---CCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCCCCCCHHHHH
T ss_conf             66---79779999999998599625899988799988999985699998989999