HHsearch alignment for GI: 254780693 and conserved domain: pfam04545

>pfam04545 Sigma70_r4 Sigma-70, region 4. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.
Probab=97.45  E-value=0.0003  Score=49.44  Aligned_cols=46  Identities=41%  Similarity=0.515  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf             44998999999999-87999789999949998899999999999807
Q gi|254780693|r  172 RNLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD  217 (235)
Q Consensus       172 ~~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg  217 (235)
T Consensus         3 ~~L~~~~r~ii~l~y~~~~t~~EIA~~lgis~~~V~~~~~ral~~LR   49 (50)
T pfam04545         3 ASLPPREREVLVLRFGEGLTLEEIGERLGISRERVRQIEKRALRKLR   49 (50)
T ss_pred             HHCCHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf             66899999999987068824999999989799999999999999862