HHsearch alignment for GI: 254780693 and conserved domain: pfam08279
>pfam08279 HTH_11 HTH domain. This family includes helix-turn-helix domains in a wide variety of proteins.
Probab=95.49 E-value=0.035 Score=34.76 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=32.5
Q ss_pred HHHHHHHHHH--CC-CCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999998--79-997899999499988999999999998079
Q gi|254780693|r 177 RETSCLQLAG--DG-YTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 177 RE~evL~l~a--~G-~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~ 218 (235)
T Consensus 1 R~~~il~~L~~~~~~vt~~~La~~l~VSr~TV~rdi~~L~-~~G~ 44 (55)
T pfam08279 1 RLLQILELLLQAREPISGQELAEKLGVSRRTIRRDIKALE-ALGV 44 (55)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH-HCCC
T ss_conf 9899999999769991899999996988999999999999-8899