HHsearch alignment for GI: 254780693 and conserved domain: pfam08279

>pfam08279 HTH_11 HTH domain. This family includes helix-turn-helix domains in a wide variety of proteins.
Probab=95.49  E-value=0.035  Score=34.76  Aligned_cols=41  Identities=29%  Similarity=0.344  Sum_probs=32.5

Q ss_pred             HHHHHHHHHH--CC-CCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf             9999999998--79-997899999499988999999999998079
Q gi|254780693|r  177 RETSCLQLAG--DG-YTSEEIAEKLGLSVHTVNAYLGSATVKLDA  218 (235)
Q Consensus       177 RE~evL~l~a--~G-~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~  218 (235)
T Consensus         1 R~~~il~~L~~~~~~vt~~~La~~l~VSr~TV~rdi~~L~-~~G~   44 (55)
T pfam08279         1 RLLQILELLLQAREPISGQELAEKLGVSRRTIRRDIKALE-ALGV   44 (55)
T ss_pred             CHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHH-HCCC
T ss_conf             9899999999769991899999996988999999999999-8899