HHsearch alignment for GI: 254780693 and conserved domain: pfam08461

>pfam08461 HTH_12 Ribonuclease R winged-helix domain. This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaebacteria.

Probab=90.02  E-value=0.56  Score=26.17  Aligned_cols=34  Identities=21%  Similarity=0.244  Sum_probs=27.0

Q ss_pred             HHHHHHHCC---CCHHHHHHHH-----CCCHHHHHHHHHHHH
Q ss_conf             999999879---9978999994-----999889999999999
Q gi|254780693|r  180 SCLQLAGDG---YTSEEIAEKL-----GLSVHTVNAYLGSAT  213 (235)
Q Consensus       180 evL~l~a~G---~t~~eIA~~L-----~iS~~TV~~hl~~i~  213 (235)
T Consensus         2 eILriL~~~~~Pigak~ia~~L~~rG~~i~eRaVRYhL~~Ld   43 (66)
T pfam08461         2 EILRILAESDKPIGAKIIAEELNLRGYDIGERAVRYHLRILD   43 (66)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             789999985998649999999998285840899999999998