HHsearch alignment for GI: 254780693 and conserved domain: smart00862
>smart00862 Trans_reg_C Transcriptional regulatory protein, C terminal. This domain is almost always found associated with the response regulator receiver domain. It may play a role in DNA binding.
Probab=93.72 E-value=0.15 Score=30.18 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHCC----CCHHHHHHHH------CCCHHHHHHHHHHHHHHCCCC
Q ss_conf 44998999999999879----9978999994------999889999999999980799
Q gi|254780693|r 172 RNLTERETSCLQLAGDG----YTSEEIAEKL------GLSVHTVNAYLGSATVKLDAV 219 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~G----~t~~eIA~~L------~iS~~TV~~hl~~i~~KLg~~ 219 (235)
T Consensus 4 v~Lt~~e~~lL~~L~~~~~~~vs~~~l~~~lw~~~~~~~~~~~l~~~I~~LR~kl~~~ 61 (78)
T smart00862 4 IKLTPKEFRLLELLLRNPGRVVSREELLEAVWGDDDDDVDDNTLDVHISRLRKKLEDD 61 (78)
T ss_pred EECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 3248999999999984799629699999876288878888602789999999997645