HHsearch results for GI: 254780693 and protein with PDBid: 1l3l_A
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=100.00 E-value=8.4e-31 Score=237.21 Aligned_cols=214 Identities=19% Similarity=0.130 Sum_probs=164.1
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCH
Q ss_conf 59999999999999858378589984177787310250442278778999624874441208799999617998373101
Q gi|254780693|r 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 (235)
Q Consensus 13 sl~dl~~~l~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~ 92 (235)
.-+.+...+..+.+.+++++|+|..... ......+||+..|.+.|....+...||++.++.....|+.|+..
T Consensus 17 ~~~~l~~~l~~~~~~~Gf~~~~~~~~~~--------~~~~~~~~~p~~w~~~Y~~~~~~~~DP~~~~~~~~~~p~~w~~~ 88 (234)
T 1l3l_A 17 DECILKTGLADIADHFGFTGYAYLHIQH--------RHITAVTNYHRQWQSTYFDKKFEALDPVVKRARSRKHIFTWSGE 88 (234)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEEEET--------TEEEEEECSCHHHHHHHHHTTGGGTCHHHHHHHHCCSCEEEEHH
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEECCC--------CCEEEECCCCHHHHHHHHHCCCHHCCHHHHHHHCCCCCEEEECH
T ss_conf 6999999999999977998799983278--------76578718998999999977961209899999748998795050
Q ss_pred HHHCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEECCCCCCCCHHHHH---HHHHHHHHHHHHHHHHCC-CCC
Q ss_conf 3314667213678996542585535899721688752345410588789989999---999999999999985124-678
Q gi|254780693|r 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII---EAHGACYQVITDFLELFK-KRS 168 (235)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~ 168 (235)
............+.+....+|.+.|+++|++.+.+..+.+++++........... .................. ...
T Consensus 89 ~~~~~~~~~~~~~~~~a~~~g~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (234)
T 1l3l_A 89 HERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFMSMFTMASDKPVIDLDREIDAVAAAATIGQIHARISFLRTTPTA 168 (234)
T ss_dssp HHTTTCCHHHHHHHHHHHTTTCSEEEEEEEECGGGCEEEEEEEESSSSCCCSSCCCHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred HHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 20033687899999999983975158888506888569997436765035689999999999999999999862168988
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 874449989999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 169 ~~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
.....||+||+|||+|+++|+|++|||.+|+||++||++|++||++||||+||+|||++|+++|||
T Consensus 169 ~~~~~LT~RE~evL~~~a~G~s~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nr~qav~~A~~~glI 234 (234)
T 1l3l_A 169 EDAAWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234 (234)
T ss_dssp ECCCCCCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 777789989999999997699999999996989999999999999986899999999999986999