HHsearch results for GI: 254780693 and protein with PDBid: 1or7_A

>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A

Probab=97.44  E-value=0.00025  Score=48.53  Aligned_cols=44  Identities=30%  Similarity=0.289  Sum_probs=41.4

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             4998999999999-8799978999994999889999999999980
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL  216 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  216 (235)
                      .|++++++++.+. -.|+|.+|||..||+|+.||+.++.++++||
T Consensus       140 ~L~~~~r~ii~l~y~~g~s~~eIA~~lg~s~~tV~~~l~ra~~~L  184 (194)
T 1or7_A          140 SLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI  184 (194)
T ss_dssp             HSCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             099999999999998398999999998939999999999999999