HHsearch results for GI: 254780693 and protein with PDBid: 1rp3_A

>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A

Probab=97.40  E-value=0.00032  Score=47.67  Aligned_cols=44  Identities=32%  Similarity=0.362  Sum_probs=41.8

Q ss_pred             CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf             4998999999999-8799978999994999889999999999980
Q gi|254780693|r  173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL  216 (235)
Q Consensus       173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  216 (235)
                      .|++||++|+.+. -+|+|-+|||..||||..+|+...+++.+||
T Consensus       187 ~L~~rer~Ii~~ry~~~~tl~eIA~~lgiS~~rVrqi~~~Al~kL  231 (239)
T 1rp3_A          187 KLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERL  231 (239)
T ss_dssp             TSCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             799999999999926999999999998959999999999999999