HHsearch results for GI: 254780693 and protein with PDBid: 1tty_A
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=96.56 E-value=0.0045 Score=39.51 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 44998999999999-----879997899999499988999999999998079978999
Q gi|254780693|r 172 RNLTERETSCLQLA-----GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 (235)
Q Consensus 172 ~~LT~RE~evL~l~-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qa 224 (235)
..|++||++|+.+- -..+|-.|||..||||..-|+..-+++.+||.-..+.+.
T Consensus 17 ~~L~~rE~~Vi~~rfGL~~~~~~Tl~eI~~~lgiSreRVRQie~~Al~kLr~~~~~~~ 74 (87)
T 1tty_A 17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKY 74 (87)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHH
T ss_pred HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 6499999999999807889996579999989598899999999999999867078899