HHsearch results for GI: 254780693 and protein with PDBid: 2a6h_F
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H 1ku2_A 3lev_A* 3les_A*
Probab=96.43 E-value=0.02 Score=34.87 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHH---H--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999---8--7999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLA---G--DGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~---a--~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.|++||++|+.+- . ..+|-+|||..||||...|+.--+++++||-
T Consensus 360 ~L~~REr~II~lRfGL~~~~~~Tl~EIg~~lgvSreRVrQIe~~AL~KLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 59999999999706678998603999999989799999999999999988