HHsearch results for GI: 254780693 and protein with PDBid: 2q0o_A
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=100.00 E-value=4.3e-32 Score=246.39 Aligned_cols=219 Identities=18% Similarity=0.055 Sum_probs=170.2
Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCE
Q ss_conf 98622599999999999998583785899841777873102504422787789996248744412087999996179983
Q gi|254780693|r 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPI 87 (235)
Q Consensus 8 ~~~~~sl~dl~~~l~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~ 87 (235)
-+.+.+..++...+..+.+.+++++|+|+..... .....++|+.+|.+.|....|...||++.++.....|+
T Consensus 14 l~~a~~~~~l~~~l~~~~~~~Gf~~~~y~~~~~~--------~~~~~~~~p~~w~~~Y~~~~y~~~DP~~~~~~~~~~p~ 85 (236)
T 2q0o_A 14 LEAAQDGHMIKIALRSFAHSCGYDRFAYLQKDGT--------QVRTFHSYPGPWESIYLGSDYFNIDPVLAEAKRRRDVF 85 (236)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHTCCEEEEEEEETT--------EEEEEECSCHHHHHHHHHTTGGGTCHHHHHHHHCCSCE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC--------CEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCC
T ss_conf 9848999999999999999819987999833887--------65787179999999999889920799999997489997
Q ss_pred EECCHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEECCCCCCCCHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf 7310133146672136789965425855358997216887523454105887899899----999999999999999851
Q gi|254780693|r 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV----IIEAHGACYQVITDFLEL 163 (235)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 163 (235)
.|+..............+......+|..+|+++|+..+.+..+.+++........... ..................
T Consensus 86 ~w~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (236)
T 2q0o_A 86 FWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPVEGSYGSAMMLTFASPERKVDISGVLDPKKAVQLLMMVHYQLKIIA 165 (236)
T ss_dssp EEESTTSCCSSCCHHHHHHHHHHHTTCCEEEEEEEECGGGCEEEEEEEESSSCCCCTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76721323357779999999999769801489998237887799996158763115778999999999999999999873
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 24678874449989999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 164 ~~~~~~~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
......+...||+||+|||+|+++|+|++|||.+|+||++||++|++||++||||+||+|||++|+++|||
T Consensus 166 ~~~~~~~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~h~~~i~~KLgv~nr~qava~A~~~GLI 236 (236)
T 2q0o_A 166 AKTVLNPKQMLSPREMLCLVWASKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRGLV 236 (236)
T ss_dssp HTCCCCGGGSCCHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 33458973439987999999986699999999996999999999999999986899999999999986899