HHsearch results for GI: 254780693 and protein with PDBid: 2rnj_A
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=99.65 E-value=3.2e-16 Score=133.23 Aligned_cols=65 Identities=32% Similarity=0.440 Sum_probs=62.5
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 74449989999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 170 ~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
..+.||+||+|||.|+++|+|++|||.+|+||++||++|+++|++||||.||+|+|.+|.+.|||
T Consensus 26 ~~~~LT~rE~evl~ll~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl~v~~r~elv~~a~~~gli 90 (91)
T 2rnj_A 26 LYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 90 (91)
T ss_dssp TGGGCCSHHHHHHHHHHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHTCC
T ss_pred HHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
T ss_conf 42617999999999999289999999997889999999999999990999999999999994899