HHsearch results for GI: 254780693 and protein with PDBid: 3iyd_F

>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12}

Probab=94.97  E-value=0.0096  Score=37.18  Aligned_cols=51  Identities=24%  Similarity=0.268  Sum_probs=46.2

Q ss_pred             CCCCHHHHHHHHHHH-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             449989999999998-----799978999994999889999999999980799789
Q gi|254780693|r  172 RNLTERETSCLQLAG-----DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI  222 (235)
Q Consensus       172 ~~LT~RE~evL~l~a-----~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~  222 (235)
                      ..|++||+.|+++-=     .++|-+|||.+||||.--|+.-.+++.+||--.+|.
T Consensus       549 ~~L~~re~~vi~~r~~~~~~~~~t~~ei~~~~~vs~~rv~qi~~~al~kLr~~~~~  604 (613)
T 3iyd_F          549 AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS  604 (613)
T ss_dssp             TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTSCSSS
T ss_pred             HCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHH
T ss_conf             27999999999998189999984599999998959999999999999997527799