Query gi|254780693|ref|YP_003065106.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 235
No_of_seqs 120 out of 7465
Neff 9.5
Searched_HMMs 23785
Date Tue May 31 16:54:47 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780693.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2q0o_A Probable transcriptiona 100.0 4.3E-32 1.8E-36 246.4 25.8 219 8-234 14-236 (236)
2 1l3l_A Transcriptional activat 100.0 8.4E-31 3.5E-35 237.2 25.2 214 13-234 17-234 (234)
3 3c3w_A Two component transcrip 99.7 4.3E-17 1.8E-21 139.5 9.1 65 170-234 146-210 (225)
4 3clo_A Transcriptional regulat 99.7 5.7E-17 2.4E-21 138.6 9.3 63 172-234 196-258 (258)
5 1fse_A GERE; helix-turn-helix 99.7 8.4E-17 3.5E-21 137.4 9.3 65 170-234 8-72 (74)
6 3klo_A Transcriptional regulat 99.7 1.1E-16 4.6E-21 136.6 7.1 63 172-234 158-221 (225)
7 2krf_A Transcriptional regulat 99.7 3E-16 1.3E-20 133.4 9.3 65 170-234 9-73 (73)
8 1je8_A Nitrate/nitrite respons 99.6 5.2E-16 2.2E-20 131.8 9.2 64 170-233 18-81 (82)
9 2rnj_A Response regulator prot 99.6 3.2E-16 1.4E-20 133.2 8.1 65 170-234 26-90 (91)
10 1p4w_A RCSB; solution structur 99.6 1.1E-15 4.6E-20 129.4 10.0 65 170-234 31-95 (99)
11 3c57_A Two component transcrip 99.6 1.9E-16 8.1E-21 134.8 5.7 65 170-234 24-88 (95)
12 1a04_A Nitrate/nitrite respons 99.6 1.5E-15 6.1E-20 128.6 10.0 64 170-233 151-214 (215)
13 1x3u_A Transcriptional regulat 99.6 1.1E-15 4.7E-20 129.4 7.9 62 173-234 16-77 (79)
14 2jpc_A SSRB; DNA binding prote 99.6 9.7E-15 4.1E-19 122.7 8.0 58 177-234 2-59 (61)
15 1yio_A Response regulatory pro 99.4 3.8E-13 1.6E-17 111.3 8.6 63 171-233 140-202 (208)
16 3ix3_A Transcriptional activat 99.4 5.8E-11 2.4E-15 95.8 16.4 157 1-163 3-165 (173)
17 2avx_A Regulatory protein SDIA 99.2 2.8E-10 1.2E-14 90.9 13.9 150 7-164 16-169 (171)
18 1xsv_A Hypothetical UPF0122 pr 98.0 1.3E-05 5.3E-10 57.7 6.6 45 173-217 25-70 (113)
19 3hug_A RNA polymerase sigma fa 97.9 0.0001 4.4E-09 51.2 10.2 44 173-216 37-81 (92)
20 1s7o_A Hypothetical UPF0122 pr 97.8 3.7E-05 1.6E-09 54.4 6.6 44 174-217 23-67 (113)
21 2o8x_A Probable RNA polymerase 97.8 3.4E-05 1.4E-09 54.7 6.4 48 171-218 13-61 (70)
22 3mzy_A RNA polymerase sigma-H 97.6 0.0001 4.2E-09 51.3 6.3 45 173-217 109-153 (164)
23 1or7_A Sigma-24, RNA polymeras 97.4 0.00025 1E-08 48.5 6.2 44 173-216 140-184 (194)
24 1rp3_A RNA polymerase sigma fa 97.4 0.00032 1.4E-08 47.7 6.4 44 173-216 187-231 (239)
25 2q1z_A RPOE, ECF SIGE; ECF sig 97.3 6.2E-05 2.6E-09 52.8 2.0 44 173-216 135-179 (184)
26 1p2f_A Response regulator; DRR 97.1 0.00078 3.3E-08 45.0 5.9 48 173-220 145-199 (220)
27 1ku3_A Sigma factor SIGA; heli 97.0 0.0016 6.8E-08 42.7 6.8 53 171-223 8-66 (73)
28 2p7v_B Sigma-70, RNA polymeras 97.0 0.0016 6.9E-08 42.7 6.5 51 172-222 4-59 (68)
29 1jhf_A LEXA repressor; LEXA SO 97.0 0.0012 5.1E-08 43.6 5.8 45 173-218 3-55 (202)
30 1kgs_A DRRD, DNA binding respo 96.7 0.0016 6.7E-08 42.7 4.7 50 173-222 151-209 (225)
31 1ys7_A Transcriptional regulat 96.7 0.0017 7.2E-08 42.5 4.8 48 173-220 159-215 (233)
32 1l9z_H Sigma factor SIGA; heli 96.6 0.017 7.2E-07 35.4 9.5 51 173-223 375-431 (438)
33 1l0o_C Sigma factor; bergerat 96.6 0.00026 1.1E-08 48.3 0.0 45 172-216 197-242 (243)
34 1tty_A Sigma-A, RNA polymerase 96.6 0.0045 1.9E-07 39.5 6.1 53 172-224 17-74 (87)
35 3k2z_A LEXA repressor; winged 96.5 0.0042 1.8E-07 39.7 5.8 46 173-219 2-54 (196)
36 2a6h_F RNA polymerase sigma fa 96.4 0.02 8.5E-07 34.9 8.7 45 173-217 360-409 (423)
37 2gwr_A DNA-binding response re 96.1 0.011 4.8E-07 36.7 6.0 48 173-220 153-209 (238)
38 1tlh_B Sigma-70, RNA polymeras 96.1 0.0061 2.6E-07 38.6 4.5 52 170-221 15-71 (81)
39 1u78_A TC3 transposase, transp 96.0 0.017 7E-07 35.5 6.3 39 172-210 5-44 (141)
40 2oqr_A Sensory transduction pr 95.7 0.012 4.9E-07 36.6 4.7 47 173-219 156-211 (230)
41 1y0u_A Arsenical resistance op 95.5 0.035 1.5E-06 33.2 6.4 39 176-214 31-69 (96)
42 2wte_A CSA3; antiviral protein 95.4 0.028 1.2E-06 33.9 5.8 47 172-219 148-196 (244)
43 2d1h_A ST1889, 109AA long hypo 95.4 0.025 1.1E-06 34.2 5.5 43 173-215 18-63 (109)
44 1uly_A Hypothetical protein PH 95.1 0.04 1.7E-06 32.8 5.8 31 85-115 32-63 (192)
45 1j5y_A Transcriptional regulat 95.1 0.03 1.3E-06 33.7 5.0 44 174-218 19-65 (187)
46 3iyd_F RNA polymerase sigma fa 95.0 0.0096 4E-07 37.2 2.3 51 172-222 549-604 (613)
47 1jko_C HIN recombinase, DNA-in 95.0 0.019 8.1E-07 35.0 3.8 38 172-209 4-42 (52)
48 2r0q_C Putative transposon TN5 94.8 0.027 1.1E-06 34.0 4.2 40 179-222 166-205 (209)
49 2cg4_A Regulatory protein ASNC 94.6 0.078 3.3E-06 30.7 6.2 43 173-215 5-49 (152)
50 2p5v_A Transcriptional regulat 94.6 0.079 3.3E-06 30.6 6.2 44 172-215 6-51 (162)
51 1gxq_A PHOB, phosphate regulon 94.5 0.075 3.1E-06 30.8 5.9 50 172-221 30-88 (106)
52 2hqr_A Putative transcriptiona 94.5 0.017 7.1E-07 35.4 2.6 47 173-219 143-198 (223)
53 2jzy_A Transcriptional regulat 94.5 0.06 2.5E-06 31.5 5.3 50 171-220 26-84 (112)
54 2e1c_A Putative HTH-type trans 94.4 0.084 3.5E-06 30.5 6.0 43 173-215 24-68 (171)
55 2ia0_A Putative HTH-type trans 94.4 0.093 3.9E-06 30.2 6.2 44 172-215 13-58 (171)
56 2pn6_A ST1022, 150AA long hypo 94.2 0.097 4.1E-06 30.0 6.0 40 176-215 3-44 (150)
57 2g9w_A Conserved hypothetical 94.2 0.11 4.5E-06 29.7 6.2 45 171-215 4-55 (138)
58 2hwv_A DNA-binding response re 94.2 0.1 4.3E-06 29.9 6.0 48 172-219 42-98 (121)
59 2dbb_A Putative HTH-type trans 94.1 0.12 5E-06 29.4 6.3 43 173-215 6-50 (151)
60 2pmu_A Response regulator PHOP 94.1 0.085 3.6E-06 30.4 5.4 49 172-220 33-90 (110)
61 1i1g_A Transcriptional regulat 93.9 0.11 4.7E-06 29.6 5.8 42 174-215 2-45 (141)
62 1sfx_A Conserved hypothetical 93.8 0.12 5.1E-06 29.3 5.8 43 173-215 17-61 (109)
63 2x4h_A Hypothetical protein SS 93.8 0.13 5.4E-06 29.2 5.9 45 171-215 8-58 (139)
64 1b9m_A Protein (mode); DNA-bin 93.7 0.11 4.6E-06 29.6 5.4 42 176-217 22-63 (265)
65 2k4j_A Putative transcriptiona 93.7 0.097 4.1E-06 30.0 5.1 48 172-219 40-96 (115)
66 1gdt_A GD resolvase, protein ( 93.5 0.098 4.1E-06 30.0 4.9 38 172-211 144-181 (183)
67 2nyx_A Probable transcriptiona 93.4 0.35 1.5E-05 26.0 7.6 44 172-215 41-86 (168)
68 3frw_A Putative Trp repressor 93.3 0.08 3.4E-06 30.6 4.2 38 179-218 49-86 (107)
69 2x48_A CAG38821; archeal virus 93.3 0.093 3.9E-06 30.1 4.5 31 181-211 24-54 (55)
70 3cuo_A Uncharacterized HTH-typ 93.2 0.12 5.2E-06 29.3 5.0 39 176-214 24-64 (99)
71 2w25_A Probable transcriptiona 93.2 0.19 8.2E-06 27.9 6.0 41 173-213 4-46 (150)
72 2w48_A Sorbitol operon regulat 93.1 0.097 4.1E-06 30.0 4.4 33 198-234 265-300 (315)
73 2cfx_A HTH-type transcriptiona 93.1 0.21 8.7E-06 27.7 6.1 42 174-215 3-46 (144)
74 2cyy_A Putative HTH-type trans 93.0 0.3 1.3E-05 26.5 6.8 43 173-215 4-48 (151)
75 1okr_A MECI, methicillin resis 93.0 0.2 8.3E-06 27.8 5.8 45 172-216 6-56 (123)
76 2z9m_A Response regulator YYCF 93.0 0.15 6.2E-06 28.7 5.2 48 172-219 35-91 (120)
77 3i4p_A Transcriptional regulat 93.0 0.22 9.4E-06 27.4 6.1 15 13-27 30-44 (162)
78 1opc_A OMPR, OMPRC; transcript 92.9 0.098 4.1E-06 30.0 4.1 49 172-220 30-87 (110)
79 1bia_A BIRA bifunctional prote 92.8 0.21 8.8E-06 27.6 5.8 35 5-39 19-54 (321)
80 2v79_A DNA replication protein 92.8 0.08 3.4E-06 30.6 3.6 43 173-215 29-78 (135)
81 3hhg_A Transcriptional regulat 92.8 0.3 1.3E-05 26.5 6.5 19 173-191 277-295 (306)
82 1qbj_A Protein (double-strande 92.8 0.18 7.6E-06 28.1 5.4 44 176-219 10-58 (81)
83 1r1t_A Transcriptional repress 92.8 0.23 9.6E-06 27.4 5.9 37 178-214 48-85 (122)
84 2vn2_A DNAD, chromosome replic 92.6 0.097 4.1E-06 30.0 3.8 43 173-215 29-78 (128)
85 1jhg_A Trp operon repressor; c 92.5 0.14 6E-06 28.8 4.6 36 173-208 35-78 (101)
86 3kor_A Possible Trp repressor; 92.5 0.1 4.2E-06 29.9 3.8 34 179-213 66-99 (119)
87 1k78_A Paired box protein PAX5 92.5 0.29 1.2E-05 26.6 6.1 37 177-214 38-74 (149)
88 1vz0_A PARB, chromosome partit 92.4 0.3 1.3E-05 26.5 6.0 38 173-210 117-156 (230)
89 1r1u_A CZRA, repressor protein 92.2 0.24 9.9E-06 27.3 5.3 36 179-214 29-65 (106)
90 2elh_A CG11849-PA, LD40883P; s 92.1 0.24 1E-05 27.2 5.3 43 173-215 22-65 (87)
91 1ku9_A Hypothetical protein MJ 92.0 0.27 1.1E-05 26.8 5.5 43 173-215 23-68 (152)
92 1s3j_A YUSO protein; structura 91.8 0.31 1.3E-05 26.4 5.6 44 172-215 33-78 (155)
93 3bj6_A Transcriptional regulat 91.7 0.31 1.3E-05 26.4 5.5 43 173-215 37-81 (152)
94 2oqg_A Possible transcriptiona 91.7 0.31 1.3E-05 26.5 5.5 39 176-214 21-60 (114)
95 3nqo_A MARR-family transcripti 91.6 0.58 2.4E-05 24.5 6.8 43 173-215 38-84 (189)
96 3b73_A PHIH1 repressor-like pr 91.6 0.2 8.5E-06 27.7 4.4 43 173-215 10-56 (111)
97 2rdp_A Putative transcriptiona 91.5 0.67 2.8E-05 24.1 7.7 44 172-215 38-83 (150)
98 3isp_A HTH-type transcriptiona 91.5 0.2 8.5E-06 27.7 4.3 21 13-33 33-53 (303)
99 2fa5_A Transcriptional regulat 91.3 0.46 1.9E-05 25.2 6.0 43 173-215 46-90 (162)
100 3boq_A Transcriptional regulat 91.2 0.68 2.9E-05 24.0 6.8 44 172-215 43-89 (160)
101 2eth_A Transcriptional regulat 91.0 0.36 1.5E-05 25.9 5.3 45 171-215 39-85 (154)
102 2qww_A Transcriptional regulat 90.9 0.33 1.4E-05 26.2 5.0 45 171-215 36-82 (154)
103 3hot_A Transposable element ma 90.8 0.38 1.6E-05 25.8 5.2 14 172-185 278-291 (345)
104 2hr3_A Probable transcriptiona 90.8 0.77 3.2E-05 23.6 7.5 45 171-215 30-77 (147)
105 2nnn_A Probable transcriptiona 90.8 0.77 3.3E-05 23.6 7.9 43 173-215 35-79 (140)
106 2fbk_A Transcriptional regulat 90.8 0.54 2.3E-05 24.7 6.0 44 172-215 65-113 (181)
107 3oop_A LIN2960 protein; protei 90.5 0.82 3.5E-05 23.4 8.6 45 171-215 32-78 (143)
108 1zx4_A P1 PARB, plasmid partit 90.4 0.63 2.6E-05 24.2 6.1 38 174-211 8-47 (192)
109 1ub9_A Hypothetical protein PH 90.4 0.33 1.4E-05 26.2 4.7 41 175-215 15-57 (100)
110 3bdd_A Regulatory protein MARR 90.4 0.55 2.3E-05 24.7 5.7 43 173-215 28-72 (142)
111 3onq_A Regulator of polyketide 90.3 0.59 2.5E-05 24.4 5.9 44 178-221 199-242 (262)
112 1pdn_C Protein (PRD paired); p 90.3 0.64 2.7E-05 24.2 6.0 38 180-217 25-62 (128)
113 2o3f_A Putative HTH-type trans 90.2 0.48 2E-05 25.1 5.3 49 172-224 17-71 (111)
114 3f6v_A Possible transcriptiona 90.1 0.2 8.4E-06 27.8 3.3 39 176-214 58-97 (151)
115 2k27_A Paired box protein PAX- 90.1 0.16 6.7E-06 28.5 2.8 36 177-213 31-66 (159)
116 3cdh_A Transcriptional regulat 90.1 0.61 2.5E-05 24.3 5.7 44 172-215 39-84 (155)
117 3f3x_A Transcriptional regulat 90.1 0.57 2.4E-05 24.6 5.6 43 173-215 34-77 (144)
118 2gxg_A 146AA long hypothetical 90.0 0.63 2.7E-05 24.2 5.8 44 172-215 33-77 (146)
119 2pex_A Transcriptional regulat 89.9 0.91 3.8E-05 23.1 8.1 45 171-215 42-88 (153)
120 2fbh_A Transcriptional regulat 89.8 0.57 2.4E-05 24.6 5.4 45 171-215 32-79 (146)
121 3jth_A Transcription activator 89.8 0.38 1.6E-05 25.8 4.5 39 176-214 23-62 (98)
122 2ijl_A AGR_C_4647P, molybdenum 89.7 0.58 2.4E-05 24.5 5.4 47 172-218 22-68 (135)
123 3deu_A Transcriptional regulat 89.6 0.97 4.1E-05 22.9 8.1 44 172-215 49-95 (166)
124 2jsc_A Transcriptional regulat 89.5 0.46 1.9E-05 25.2 4.8 39 176-214 21-60 (118)
125 1u2w_A CADC repressor, cadmium 89.5 0.61 2.6E-05 24.3 5.4 39 176-214 42-82 (122)
126 1r71_A Transcriptional repress 89.3 0.39 1.7E-05 25.7 4.3 38 173-210 35-74 (178)
127 2jn6_A Protein CGL2762, transp 89.3 0.44 1.8E-05 25.4 4.5 34 179-212 12-47 (97)
128 2hqn_A Putative transcriptiona 89.3 0.18 7.4E-06 28.2 2.5 47 172-218 28-83 (109)
129 3fxq_A LYSR type regulator of 89.3 0.62 2.6E-05 24.3 5.3 11 174-184 280-290 (305)
130 3fm5_A Transcriptional regulat 89.2 0.74 3.1E-05 23.7 5.6 44 172-215 35-81 (150)
131 3f6o_A Probable transcriptiona 89.0 0.39 1.6E-05 25.7 4.1 36 179-214 21-57 (118)
132 3hef_A Gene 1 protein; bacteri 89.0 0.23 9.7E-06 27.3 2.9 42 170-211 12-55 (143)
133 3ech_A MEXR, multidrug resista 88.9 0.66 2.8E-05 24.1 5.2 43 173-215 34-78 (142)
134 3iwf_A Transcription regulator 88.9 0.89 3.8E-05 23.1 5.8 49 172-224 13-67 (107)
135 3eco_A MEPR; mutlidrug efflux 88.6 0.81 3.4E-05 23.4 5.5 44 172-215 27-74 (139)
136 3bpv_A Transcriptional regulat 88.5 1.1 4.8E-05 22.4 8.6 45 171-215 24-70 (138)
137 1sd4_A Penicillinase repressor 88.4 0.69 2.9E-05 24.0 5.0 43 173-215 7-55 (126)
138 3cjn_A Transcriptional regulat 88.3 0.85 3.6E-05 23.3 5.4 45 171-215 47-93 (162)
139 2fxa_A Protease production reg 88.3 0.95 4E-05 22.9 5.7 45 171-215 43-89 (207)
140 1ixc_A CBNR, LYSR-type regulat 88.2 0.81 3.4E-05 23.4 5.3 21 13-33 28-48 (294)
141 3nrv_A Putative transcriptiona 88.1 1.2 5E-05 22.2 8.4 45 171-215 35-81 (148)
142 2o0m_A Transcriptional regulat 88.0 0.079 3.3E-06 30.6 0.0 33 198-234 290-325 (345)
143 2fbi_A Probable transcriptiona 87.9 0.89 3.8E-05 23.1 5.4 44 172-215 32-77 (142)
144 1p6r_A Penicillinase repressor 87.9 0.85 3.6E-05 23.3 5.2 46 171-216 4-55 (82)
145 2bv6_A MGRA, HTH-type transcri 87.8 0.41 1.7E-05 25.5 3.6 43 173-215 34-78 (142)
146 3g3z_A NMB1585, transcriptiona 87.7 0.82 3.4E-05 23.4 5.1 44 172-215 27-72 (145)
147 1qgp_A Protein (double strande 87.6 0.76 3.2E-05 23.6 4.9 43 176-218 14-61 (77)
148 2kko_A Possible transcriptiona 87.4 0.66 2.8E-05 24.1 4.4 36 179-214 28-64 (108)
149 3lmm_A Uncharacterized protein 87.4 0.89 3.7E-05 23.2 5.1 43 173-215 427-471 (583)
150 2a61_A Transcriptional regulat 87.0 1.4 5.8E-05 21.8 6.3 44 172-215 29-74 (145)
151 2k4b_A Transcriptional regulat 87.0 0.25 1.1E-05 27.1 2.1 45 172-216 31-81 (99)
152 3jw4_A Transcriptional regulat 86.8 0.56 2.4E-05 24.6 3.8 43 173-215 38-84 (148)
153 2zkz_A Transcriptional repress 86.7 0.78 3.3E-05 23.6 4.5 37 176-212 27-65 (99)
154 3mky_B Protein SOPB; partition 86.6 1.3 5.3E-05 22.1 5.5 38 173-210 23-64 (189)
155 3e6m_A MARR family transcripti 86.5 0.72 3E-05 23.8 4.2 44 172-215 49-94 (161)
156 2frh_A SARA, staphylococcal ac 86.1 0.76 3.2E-05 23.6 4.2 44 172-215 33-80 (127)
157 3fzv_A Probable transcriptiona 86.1 1.1 4.7E-05 22.5 5.0 11 175-185 284-294 (306)
158 3k0l_A Repressor protein; heli 86.1 1.3 5.3E-05 22.1 5.3 44 172-215 42-87 (162)
159 1mkm_A ICLR transcriptional re 86.0 1.6 6.5E-05 21.4 6.0 30 115-144 197-227 (249)
160 1uxc_A FRUR (1-57), fructose r 85.8 0.38 1.6E-05 25.8 2.5 46 189-234 1-48 (65)
161 1p4x_A Staphylococcal accessor 85.2 1.6 6.8E-05 21.3 5.5 43 173-215 155-201 (250)
162 3kp7_A Transcriptional regulat 85.2 1.5 6.3E-05 21.5 5.3 43 173-215 35-78 (151)
163 3bja_A Transcriptional regulat 83.9 1.9 8E-05 20.8 6.5 44 172-215 29-74 (139)
164 1z91_A Organic hydroperoxide r 83.7 1.5 6.2E-05 21.6 4.7 44 172-215 36-81 (147)
165 1ais_B TFB TFIIB, protein (tra 83.6 1.5 6.4E-05 21.5 4.8 37 182-218 159-195 (200)
166 2esn_A Probable transcriptiona 83.6 1.9 8.1E-05 20.8 5.3 21 13-33 37-57 (310)
167 1jgs_A Multiple antibiotic res 82.9 2.1 8.8E-05 20.5 8.6 44 172-215 30-75 (138)
168 1b72_B Protein (PBX1); homeodo 82.8 2.1 8.9E-05 20.5 5.8 46 172-217 6-60 (87)
169 3hsr_A HTH-type transcriptiona 82.8 2.1 8.9E-05 20.5 7.6 44 172-215 32-77 (140)
170 2gmg_A Hypothetical protein PF 82.0 0.97 4.1E-05 22.9 3.3 45 174-218 10-58 (105)
171 1fx7_A Iron-dependent represso 81.4 2.4 9.9E-05 20.1 6.1 10 26-35 46-55 (230)
172 2auw_A Hypothetical protein NE 81.0 1.2 5.1E-05 22.2 3.5 38 173-211 89-126 (170)
173 2o0y_A Transcriptional regulat 80.9 1.3 5.3E-05 22.1 3.5 22 115-136 205-227 (260)
174 2qlz_A Transcription factor PF 80.7 0.58 2.5E-05 24.5 1.8 43 175-218 163-207 (232)
175 2ia2_A Putative transcriptiona 80.5 1.4 5.7E-05 21.9 3.6 29 115-143 209-238 (265)
176 2g7u_A Transcriptional regulat 80.3 1.9 7.9E-05 20.8 4.3 31 115-145 202-233 (257)
177 3c2b_A Transcriptional regulat 79.3 1.9 8.2E-05 20.7 4.1 16 203-218 192-207 (221)
178 3hh0_A Transcriptional regulat 78.8 1.4 5.7E-05 21.8 3.1 15 186-200 59-73 (146)
179 2k9s_A Arabinose operon regula 78.7 2.9 0.00012 19.5 5.8 36 176-211 3-43 (107)
180 1r8d_A Transcription activator 78.7 1.4 5.7E-05 21.8 3.1 28 174-201 41-72 (109)
181 3o9x_A Uncharacterized HTH-typ 78.5 2.5 0.00011 20.0 4.4 38 173-211 70-107 (133)
182 3k2a_A Homeobox protein MEIS2; 78.5 2.4 0.0001 20.1 4.4 44 173-216 4-56 (67)
183 2hxi_A Putative transcriptiona 78.2 0.82 3.4E-05 23.4 1.9 22 9-33 26-47 (241)
184 2da4_A Hypothetical protein DK 78.2 3 0.00012 19.4 7.3 47 170-216 11-67 (80)
185 2rn7_A IS629 ORFA; helix, all 77.6 1.4 5.9E-05 21.7 3.0 36 180-215 14-57 (108)
186 1x2n_A Homeobox protein pknox1 77.3 3.1 0.00013 19.3 5.2 44 173-216 13-65 (73)
187 3bqy_A Putative TETR family tr 77.3 1.4 6E-05 21.7 2.9 12 185-196 167-178 (209)
188 3hrs_A Metalloregulator SCAR; 77.1 3.1 0.00013 19.3 4.5 11 26-36 42-52 (214)
189 3bro_A Transcriptional regulat 76.9 3.2 0.00013 19.2 8.5 43 173-215 31-77 (141)
190 2zcx_A SCO7815, TETR-family tr 76.3 1.9 8E-05 20.8 3.3 13 21-33 29-41 (231)
191 1rr7_A Middle operon regulator 76.3 3.3 0.00014 19.1 4.8 44 174-218 79-122 (129)
192 3mlf_A Transcriptional regulat 76.2 2.4 0.0001 20.1 3.8 27 185-211 33-59 (111)
193 2vz4_A Tipal, HTH-type transcr 76.2 1.6 6.6E-05 21.4 2.9 20 183-202 53-72 (108)
194 1z05_A Transcriptional regulat 76.2 3.1 0.00013 19.3 4.4 19 170-190 314-332 (429)
195 1lmb_3 Protein (lambda repress 75.9 3.4 0.00014 19.0 5.1 56 173-232 6-70 (92)
196 1hlv_A CENP-B, major centromer 75.8 3.1 0.00013 19.3 4.3 38 174-211 8-48 (131)
197 1uhs_A HOP, homeodomain only p 75.7 3.4 0.00014 19.0 5.8 46 171-216 5-57 (72)
198 1q06_A Transcriptional regulat 75.4 1.9 8.1E-05 20.8 3.1 13 186-198 55-67 (135)
199 2vke_A Tetracycline repressor 75.3 1.8 7.5E-05 21.0 3.0 16 202-217 186-201 (207)
200 1wh5_A ZF-HD homeobox family p 75.1 3.3 0.00014 19.1 4.2 45 173-217 23-77 (80)
201 3e6c_C CPRK, cyclic nucleotide 74.5 3.1 0.00013 19.3 4.0 43 188-230 177-228 (250)
202 2fmy_A COOA, carbon monoxide o 74.4 3 0.00013 19.4 3.9 29 187-215 166-194 (220)
203 3dew_A Transcriptional regulat 74.4 1.3 5.3E-05 22.1 2.0 10 180-189 188-197 (206)
204 3iwz_A CAP-like, catabolite ac 74.3 3.2 0.00013 19.2 4.0 26 189-214 188-213 (230)
205 3gzi_A Transcriptional regulat 74.3 1.4 5.8E-05 21.8 2.2 26 8-33 10-35 (218)
206 3mcz_A O-methyltransferase; ad 74.0 3 0.00013 19.4 3.9 11 23-33 75-85 (352)
207 2hku_A A putative transcriptio 74.0 1.5 6.4E-05 21.5 2.3 16 203-218 188-203 (215)
208 3kcc_A Catabolite gene activat 73.8 3.3 0.00014 19.1 4.0 27 189-215 218-244 (260)
209 2fjr_A Repressor protein CI; g 73.8 3.8 0.00016 18.7 5.0 23 188-210 19-42 (189)
210 2ibd_A Possible transcriptiona 73.8 2.4 9.9E-05 20.1 3.3 17 174-190 182-200 (204)
211 1le8_B Mating-type protein alp 73.5 3.9 0.00016 18.6 5.1 46 173-218 8-62 (83)
212 1pb6_A Hypothetical transcript 73.5 1.2 5E-05 22.3 1.7 29 5-33 7-36 (212)
213 2h09_A Transcriptional regulat 73.5 3.1 0.00013 19.3 3.8 18 192-209 58-75 (155)
214 2b5a_A C.BCLI; helix-turn-heli 73.5 2.7 0.00011 19.7 3.5 45 184-232 19-63 (77)
215 1b8i_A Ultrabithorax, protein 73.4 3.2 0.00013 19.2 3.8 46 173-218 26-77 (81)
216 1j9i_A GPNU1 DBD;, terminase s 73.4 1.4 5.7E-05 21.9 1.9 21 190-210 4-24 (68)
217 3fmy_A HTH-type transcriptiona 73.3 2.1 8.6E-05 20.6 2.9 38 173-211 10-47 (73)
218 1ig7_A Homeotic protein MSX-1; 72.7 3.3 0.00014 19.1 3.8 44 173-216 6-55 (58)
219 2l49_A C protein; P2 bacteriop 72.5 3 0.00013 19.4 3.6 27 185-211 14-40 (99)
220 1jgg_A Segmentation protein EV 72.5 3.3 0.00014 19.1 3.8 44 173-216 7-56 (60)
221 2cmp_A G1P, terminase small su 72.4 3.2 0.00013 19.2 3.7 46 171-216 6-52 (63)
222 2dmn_A Homeobox protein TGIF2L 72.3 4.1 0.00017 18.4 6.3 46 172-217 12-66 (83)
223 2qtq_A Transcriptional regulat 72.2 2 8.3E-05 20.7 2.6 13 21-33 22-34 (213)
224 2oz6_A Virulence factor regula 72.2 3.7 0.00016 18.7 4.0 27 189-215 165-191 (207)
225 3egq_A TETR family transcripti 71.7 4.2 0.00018 18.3 4.9 12 22-33 11-22 (170)
226 3omt_A Uncharacterized protein 71.5 3 0.00013 19.4 3.4 46 183-232 16-61 (73)
227 3bs3_A Putative DNA-binding pr 71.4 3.5 0.00015 18.9 3.7 29 184-212 19-47 (76)
228 2ppx_A AGR_C_3184P, uncharacte 71.4 3.3 0.00014 19.1 3.5 31 179-210 35-65 (99)
229 3op9_A PLI0006 protein; struct 71.3 4.3 0.00018 18.3 4.7 26 185-210 19-44 (114)
230 2r1j_L Repressor protein C2; p 71.3 4.3 0.00018 18.3 4.7 45 184-232 14-58 (68)
231 3a02_A Homeobox protein arista 71.3 3.7 0.00015 18.8 3.8 47 173-219 5-57 (60)
232 3f1b_A TETR-like transcription 71.1 3 0.00012 19.4 3.3 12 21-32 20-31 (203)
233 1tc3_C Protein (TC3 transposas 71.0 4.4 0.00018 18.2 5.3 41 171-211 3-44 (51)
234 1utx_A CYLR2; DNA-binding prot 70.9 4.2 0.00018 18.4 4.0 45 184-232 10-54 (66)
235 3a03_A T-cell leukemia homeobo 70.9 3.9 0.00016 18.6 3.8 43 174-216 4-52 (56)
236 2wiu_B HTH-type transcriptiona 70.8 4.4 0.00019 18.2 4.8 46 184-233 21-66 (88)
237 2w7n_A TRFB transcriptional re 70.8 4.4 0.00019 18.2 7.0 44 173-216 18-62 (101)
238 2dmt_A Homeobox protein BARH-l 70.5 4.1 0.00017 18.5 3.9 44 174-217 24-73 (80)
239 2kpj_A SOS-response transcript 70.3 3 0.00013 19.4 3.2 45 184-232 18-62 (94)
240 2gau_A Transcriptional regulat 70.3 4.2 0.00018 18.4 3.9 26 189-214 181-206 (232)
241 1ft9_A Carbon monoxide oxidati 70.3 4.4 0.00018 18.2 4.0 29 188-217 163-191 (222)
242 2nx4_A Transcriptional regulat 70.3 3.3 0.00014 19.1 3.4 10 22-31 17-26 (194)
243 2kt0_A Nanog, homeobox protein 70.2 3.6 0.00015 18.8 3.5 44 174-217 29-78 (84)
244 3la7_A Global nitrogen regulat 70.2 4.5 0.00019 18.1 4.0 28 188-215 193-220 (243)
245 3cwr_A Transcriptional regulat 70.2 2.8 0.00012 19.6 3.0 17 173-189 190-206 (208)
246 2of7_A Putative TETR-family tr 70.2 3.3 0.00014 19.1 3.3 12 179-190 218-229 (260)
247 2ict_A Antitoxin HIGA; helix-t 70.2 3.8 0.00016 18.7 3.6 45 184-232 17-61 (94)
248 1mnm_C Protein (MAT alpha-2 tr 70.1 4.6 0.00019 18.1 5.2 45 173-217 33-86 (87)
249 2vi6_A Homeobox protein nanog; 70.0 3.8 0.00016 18.7 3.6 43 174-216 10-58 (62)
250 2zcm_A Biofilm operon icaabcd 69.8 3.4 0.00014 19.0 3.3 12 189-200 159-170 (192)
251 2i10_A Putative TETR transcrip 69.7 2.3 9.5E-05 20.3 2.4 15 197-211 176-190 (202)
252 2g7g_A RHA04620, putative tran 69.7 1.3 5.4E-05 22.0 1.1 14 202-215 189-202 (213)
253 2a6c_A Helix-turn-helix motif; 69.6 4.7 0.0002 18.0 4.7 46 185-233 28-73 (83)
254 2dn0_A Zinc fingers and homeob 69.5 4.7 0.0002 18.0 6.7 46 172-217 13-64 (76)
255 2wui_A MEXZ, transcriptional r 69.5 3.5 0.00015 18.9 3.3 13 21-33 17-29 (210)
256 1ftt_A TTF-1 HD, thyroid trans 69.4 4.3 0.00018 18.3 3.8 45 173-217 8-58 (68)
257 3e97_A Transcriptional regulat 69.4 4.7 0.0002 18.0 4.0 26 189-214 176-201 (231)
258 2dmq_A LIM/homeobox protein LH 69.4 4.5 0.00019 18.2 3.9 44 173-216 13-62 (80)
259 1z6r_A MLC protein; transcript 69.3 4.7 0.0002 18.0 6.0 17 14-30 125-141 (406)
260 1r69_A Repressor protein CI; g 69.3 4.4 0.00019 18.2 3.8 28 184-211 10-37 (69)
261 3nau_A Zinc fingers and homeob 69.3 4.5 0.00019 18.2 3.9 43 174-216 11-59 (66)
262 2ao9_A Phage protein; structur 69.3 4.3 0.00018 18.3 3.7 37 173-209 23-69 (155)
263 2o7t_A Transcriptional regulat 69.2 3 0.00013 19.4 3.0 13 21-33 14-26 (199)
264 2id3_A Putative transcriptiona 69.1 2 8.3E-05 20.7 2.0 10 224-233 212-221 (225)
265 1t33_A Putative transcriptiona 69.1 2.1 8.9E-05 20.5 2.2 13 21-33 18-30 (224)
266 2d5v_A Hepatocyte nuclear fact 69.0 4.8 0.0002 17.9 4.0 49 173-221 103-157 (164)
267 2dmu_A Homeobox protein goosec 68.8 4.6 0.00019 18.1 3.8 44 173-216 13-62 (70)
268 3kz9_A SMCR; transcriptional r 68.7 3.7 0.00016 18.8 3.3 13 21-33 23-35 (206)
269 3kz3_A Repressor protein CI; f 68.5 4.9 0.00021 17.9 4.9 28 184-211 21-48 (80)
270 2h1k_A IPF-1, pancreatic and d 68.5 4.7 0.0002 18.0 3.8 44 173-216 9-58 (63)
271 3fx3_A Cyclic nucleotide-bindi 68.4 3.3 0.00014 19.1 3.0 26 190-215 180-205 (237)
272 1ui5_A A-factor receptor homol 68.4 3.9 0.00016 18.6 3.4 15 202-216 178-192 (215)
273 2f07_A YVDT; helix-turn-helix, 68.4 3.8 0.00016 18.7 3.3 18 16-33 14-31 (197)
274 3g7r_A Putative transcriptiona 68.3 3.8 0.00016 18.7 3.3 13 21-33 41-53 (221)
275 3knw_A Putative transcriptiona 68.2 3.9 0.00017 18.6 3.4 13 21-33 20-32 (212)
276 1akh_A Protein (mating-type pr 68.2 4.9 0.00021 17.9 3.9 45 172-216 10-60 (61)
277 2ahq_A Sigma-54, RNA polymeras 68.1 3.9 0.00016 18.6 3.3 23 189-211 38-65 (76)
278 3f52_A CLP gene regulator (CLG 68.0 5 0.00021 17.8 4.1 44 185-232 38-81 (117)
279 2da2_A Alpha-fetoprotein enhan 68.0 4.5 0.00019 18.1 3.7 45 173-217 13-63 (70)
280 3bhq_A Transcriptional regulat 67.9 2.6 0.00011 19.8 2.4 13 21-33 18-30 (211)
281 2r5y_A Homeotic protein sex co 67.9 4.8 0.0002 18.0 3.8 45 173-217 34-84 (88)
282 3ni7_A Bacterial regulatory pr 67.8 3.8 0.00016 18.7 3.3 11 22-32 14-24 (213)
283 2guh_A Putative TETR-family tr 67.8 2.2 9.2E-05 20.4 2.0 14 20-33 44-57 (214)
284 1zq3_P PRD-4, homeotic bicoid 67.8 4.8 0.0002 17.9 3.8 44 173-216 8-57 (68)
285 2e1o_A Homeobox protein PRH; D 67.7 4.8 0.0002 17.9 3.8 44 173-216 13-62 (70)
286 2djn_A Homeobox protein DLX-5; 67.6 4.1 0.00017 18.4 3.4 45 173-217 13-63 (70)
287 2rek_A Putative TETR-family tr 67.6 3.5 0.00015 18.9 3.0 13 21-33 22-34 (199)
288 2hdd_A Protein (engrailed home 67.5 5.1 0.00021 17.8 3.8 44 173-216 9-58 (61)
289 3lhq_A Acrab operon repressor 67.5 4.1 0.00017 18.4 3.4 21 13-33 12-32 (220)
290 2ys8_A RAB-related GTP-binding 67.5 5.1 0.00022 17.7 3.9 47 169-218 7-53 (90)
291 1au7_A Protein PIT-1, GHF-1; c 67.4 5.2 0.00022 17.7 3.9 26 191-216 117-142 (146)
292 1zug_A Phage 434 CRO protein; 67.3 4.7 0.0002 18.0 3.6 29 183-211 11-39 (71)
293 2jvl_A TRMBF1; coactivator, he 67.3 3.8 0.00016 18.7 3.1 26 185-210 46-71 (107)
294 1lj9_A Transcriptional regulat 67.1 5.2 0.00022 17.7 6.8 43 173-215 26-70 (144)
295 2np5_A Transcriptional regulat 66.9 3.6 0.00015 18.8 3.0 16 204-219 179-194 (203)
296 2oi8_A Putative regulatory pro 66.9 1.2 5.2E-05 22.1 0.6 11 22-32 23-33 (216)
297 1t56_A EThr repressor; helix-t 66.8 3.6 0.00015 18.8 3.0 14 20-33 29-42 (216)
298 3crj_A Transcription regulator 66.8 2.7 0.00011 19.8 2.3 13 21-33 20-32 (199)
299 1umq_A Photosynthetic apparatu 66.7 5.3 0.00022 17.6 5.1 31 181-211 47-77 (81)
300 1wi3_A DNA-binding protein SAT 66.7 5.2 0.00022 17.7 3.8 46 172-217 12-64 (71)
301 2jml_A DNA binding domain/tran 66.7 2.3 9.8E-05 20.2 2.0 20 190-209 7-26 (81)
302 3bjb_A Probable transcriptiona 66.6 3.6 0.00015 18.8 3.0 16 177-192 190-205 (207)
303 2zdb_A Transcriptional regulat 66.5 5.1 0.00022 17.7 3.7 26 189-214 140-165 (195)
304 3hta_A EBRA repressor; TETR fa 66.4 3.7 0.00016 18.7 3.0 13 200-212 184-196 (217)
305 2oer_A Probable transcriptiona 66.4 4.5 0.00019 18.1 3.4 17 17-33 26-42 (214)
306 2ecb_A Zinc fingers and homeob 66.4 4.7 0.0002 18.0 3.5 30 191-220 41-70 (89)
307 2cra_A Homeobox protein HOX-B1 66.3 4.9 0.00021 17.9 3.6 45 173-217 13-63 (70)
308 3bru_A Regulatory protein, TET 66.2 4.6 0.00019 18.1 3.4 19 198-216 198-216 (222)
309 3nnr_A Transcriptional regulat 66.1 3.8 0.00016 18.7 3.0 12 174-185 198-209 (228)
310 3o60_A LIN0861 protein; PSI, M 65.9 4.6 0.0002 18.0 3.4 11 13-23 20-30 (185)
311 2qib_A TETR-family transcripti 65.9 3.8 0.00016 18.7 2.9 13 21-33 19-31 (231)
312 3bni_A Putative TETR-family tr 65.8 4.7 0.0002 18.0 3.4 15 19-33 47-61 (229)
313 1k61_A Mating-type protein alp 65.6 5.6 0.00023 17.5 6.3 44 173-216 4-56 (60)
314 2rae_A Transcriptional regulat 65.5 4.4 0.00019 18.2 3.2 22 13-34 18-39 (207)
315 1puf_B PRE-B-cell leukemia tra 65.5 5.6 0.00024 17.5 4.8 46 172-217 6-60 (73)
316 2dms_A Homeobox protein OTX2; 65.4 4.5 0.00019 18.1 3.2 43 174-216 14-62 (80)
317 1c9b_A General transcription f 65.3 3.3 0.00014 19.1 2.6 34 183-216 154-187 (207)
318 3hcy_A Putative two-component 65.3 5.7 0.00024 17.4 12.1 131 11-156 1-133 (151)
319 1rkt_A Protein YFIR; transcrip 65.2 3 0.00013 19.4 2.3 13 21-33 18-30 (205)
320 2k40_A Homeobox expressed in E 65.2 5.7 0.00024 17.4 3.8 47 173-219 7-59 (67)
321 3cjd_A Transcriptional regulat 65.1 4 0.00017 18.5 2.9 11 22-32 19-29 (198)
322 2ecc_A Homeobox and leucine zi 65.0 5.7 0.00024 17.4 3.8 45 173-217 9-59 (76)
323 1adr_A P22 C2 repressor; trans 64.9 4.3 0.00018 18.3 3.0 44 185-232 15-58 (76)
324 1nk2_P Homeobox protein VND; h 64.9 5.7 0.00024 17.4 3.8 44 173-216 15-64 (77)
325 3b81_A Transcriptional regulat 64.8 3.2 0.00013 19.2 2.3 17 203-219 179-195 (203)
326 1xd7_A YWNA; structural genomi 64.7 5.8 0.00024 17.4 4.2 15 134-148 64-78 (145)
327 1b72_A Protein (homeobox prote 64.6 5.8 0.00024 17.3 3.8 27 191-217 64-90 (97)
328 3mvp_A TETR/ACRR transcription 64.6 4.1 0.00017 18.4 2.9 15 19-33 30-44 (217)
329 2h98_A HTH-type transcriptiona 64.5 1.1 4.7E-05 22.4 0.0 12 116-127 254-265 (313)
330 1du6_A PBX1, homeobox protein 64.5 4.3 0.00018 18.3 3.0 44 173-216 9-61 (64)
331 2eby_A Putative HTH-type trans 64.4 4.3 0.00018 18.3 3.0 27 184-210 20-46 (113)
332 2qwt_A Transcriptional regulat 64.3 4.6 0.00019 18.1 3.1 21 13-33 11-31 (196)
333 3f6w_A XRE-family like protein 64.0 4.9 0.00021 17.9 3.2 27 184-210 23-49 (83)
334 2gfn_A HTH-type transcriptiona 64.0 2.3 9.5E-05 20.3 1.5 17 200-216 184-200 (209)
335 1b0n_A Protein (SINR protein); 64.0 5.7 0.00024 17.4 3.5 26 185-210 11-36 (111)
336 1fjl_A Paired protein; DNA-bin 63.9 6 0.00025 17.2 3.8 45 173-217 24-74 (81)
337 2ef8_A C.ECOT38IS, putative tr 63.7 5.8 0.00024 17.4 3.5 28 184-211 19-46 (84)
338 1y7y_A C.AHDI; helix-turn-heli 63.7 6 0.00025 17.2 5.5 45 185-233 23-67 (74)
339 1vi0_A Transcriptional regulat 63.6 4.4 0.00018 18.2 2.9 17 179-195 183-199 (206)
340 3a01_A Homeodomain-containing 63.6 5.1 0.00022 17.7 3.2 44 173-216 23-72 (93)
341 2q24_A Putative TETR family tr 63.6 4.5 0.00019 18.2 2.9 15 19-33 19-33 (194)
342 3clc_A Regulatory protein; pro 63.6 6.1 0.00026 17.2 4.5 44 185-232 21-64 (82)
343 2d9s_A CBL E3 ubiquitin protei 63.5 4.3 0.00018 18.3 2.8 41 178-219 10-50 (53)
344 3dv8_A Transcriptional regulat 63.5 6.1 0.00026 17.2 4.0 27 189-215 170-196 (220)
345 1ahd_P Antennapedia protein mu 63.2 6.2 0.00026 17.2 3.8 45 173-217 8-58 (68)
346 2ooa_A E3 ubiquitin-protein li 63.1 2.4 0.0001 20.0 1.5 37 178-215 12-48 (52)
347 1g2h_A Transcriptional regulat 63.1 5.7 0.00024 17.4 3.4 37 173-210 17-55 (61)
348 2zb9_A Putative transcriptiona 62.9 4.8 0.0002 18.0 3.0 14 201-214 186-199 (214)
349 3g1l_A Transcriptional regulat 62.9 4.7 0.0002 18.0 3.0 17 18-34 47-63 (256)
350 2ewt_A BLDD, putative DNA-bind 62.6 5.9 0.00025 17.3 3.4 45 184-232 17-63 (71)
351 2cfu_A SDSA1; SDS-hydrolase, l 62.4 2.1 9E-05 20.5 1.1 38 179-216 370-419 (658)
352 1x57_A Endothelial differentia 62.3 5.8 0.00024 17.4 3.3 28 184-211 22-49 (91)
353 2da3_A Alpha-fetoprotein enhan 62.3 6.4 0.00027 17.1 3.8 27 191-217 47-73 (80)
354 2v57_A TETR family transcripti 62.2 5.7 0.00024 17.4 3.3 13 20-32 19-31 (190)
355 2id6_A Transcriptional regulat 62.0 2.1 8.8E-05 20.5 1.0 15 174-188 147-162 (202)
356 2cue_A Paired box protein PAX6 61.9 6.5 0.00027 17.0 3.8 45 173-217 13-63 (80)
357 1zk8_A Transcriptional regulat 61.2 2.6 0.00011 19.9 1.3 21 13-33 9-29 (183)
358 3eus_A DNA-binding protein; st 61.1 6.7 0.00028 16.9 3.6 26 185-210 24-49 (86)
359 3ivp_A Putative transposon-rel 60.9 6.7 0.00028 16.9 3.5 10 174-183 94-103 (126)
360 3g5g_A Regulatory protein; tra 60.9 6.5 0.00027 17.0 3.4 44 185-232 38-81 (99)
361 3on4_A Transcriptional regulat 60.7 5.4 0.00023 17.5 3.0 10 24-33 22-31 (191)
362 3nar_A ZHX1, zinc fingers and 60.6 6.8 0.00029 16.9 3.9 47 174-220 32-84 (96)
363 3dcf_A Transcriptional regulat 60.5 6.7 0.00028 16.9 3.4 13 21-33 37-49 (218)
364 2ras_A Transcriptional regulat 60.2 3.4 0.00014 19.0 1.8 41 181-221 159-201 (212)
365 3kkc_A TETR family transcripti 59.8 3.5 0.00015 18.9 1.8 15 199-213 161-175 (177)
366 2wus_R RODZ, putative uncharac 59.8 5.9 0.00025 17.3 3.0 36 184-219 16-68 (112)
367 2z99_A Putative uncharacterize 59.6 7.1 0.0003 16.7 4.5 83 12-102 42-130 (219)
368 2da7_A Zinc finger homeobox pr 59.6 7.1 0.0003 16.7 3.8 29 191-219 35-63 (71)
369 3dkw_A DNR protein; CRP-FNR, H 59.4 7.1 0.0003 16.7 3.9 27 189-215 179-205 (227)
370 3d0s_A Transcriptional regulat 59.3 7.1 0.0003 16.7 4.0 27 188-214 177-203 (227)
371 3jsj_A Putative TETR-family tr 59.3 6.9 0.00029 16.8 3.3 13 21-33 15-27 (190)
372 2xsd_C POU domain, class 3, tr 59.0 7.2 0.0003 16.7 3.8 30 191-220 129-158 (164)
373 3he0_A Transcriptional regulat 58.6 4.6 0.00019 18.1 2.3 11 200-210 177-187 (196)
374 3pas_A TETR family transcripti 58.4 4.4 0.00019 18.2 2.2 15 201-215 174-188 (195)
375 2da5_A Zinc fingers and homeob 58.4 6 0.00025 17.3 2.8 44 174-217 14-63 (75)
376 3by6_A Predicted transcription 58.3 7.4 0.00031 16.6 3.9 14 182-195 99-112 (126)
377 2oo9_A E3 ubiquitin-protein li 58.3 3 0.00013 19.4 1.3 38 178-216 5-42 (46)
378 1bw5_A ISL-1HD, insulin gene e 58.2 7.4 0.00031 16.6 4.0 48 174-221 10-63 (66)
379 2g7s_A Transcriptional regulat 58.1 6.5 0.00027 17.0 3.0 23 195-217 171-193 (194)
380 3kkd_A Transcriptional regulat 57.9 1.6 6.8E-05 21.3 -0.1 16 199-214 217-232 (237)
381 2dmp_A Zinc fingers and homeob 57.7 7.6 0.00032 16.5 3.9 26 191-216 43-68 (89)
382 2o38_A Hypothetical protein; a 57.5 7.6 0.00032 16.5 4.7 46 185-233 50-95 (120)
383 1x2m_A LAG1 longevity assuranc 57.2 7.7 0.00032 16.5 3.9 45 173-217 6-57 (64)
384 1puf_A HOX-1.7, homeobox prote 57.1 7.8 0.00033 16.5 3.8 45 173-217 19-69 (77)
385 2qko_A Possible transcriptiona 57.0 3.9 0.00016 18.6 1.7 13 21-33 34-46 (215)
386 3kxa_A NGO0477 protein, putati 56.9 7.8 0.00033 16.4 3.8 45 184-232 77-121 (141)
387 1al3_A Cys regulon transcripti 56.8 1.9 7.8E-05 20.9 0.0 34 173-206 279-313 (324)
388 3i53_A O-methyltransferase; CO 56.7 7.9 0.00033 16.4 5.2 11 175-185 282-292 (332)
389 2zcw_A TTHA1359, transcription 56.2 8 0.00034 16.4 4.0 27 188-214 146-172 (202)
390 1tw3_A COMT, carminomycin 4-O- 55.9 8.1 0.00034 16.3 4.6 12 22-33 70-81 (360)
391 1ojl_A Transcriptional regulat 55.7 8.2 0.00034 16.3 3.3 37 174-210 265-303 (304)
392 2da1_A Alpha-fetoprotein enhan 55.4 8.2 0.00035 16.3 3.9 46 172-217 12-63 (70)
393 2e19_A Transcription factor 8; 54.8 8.4 0.00035 16.2 3.6 25 191-215 33-57 (64)
394 2w53_A Repressor, SMet; antibi 54.7 5.9 0.00025 17.3 2.3 19 15-33 14-32 (219)
395 2ip2_A Probable phenazine-spec 54.6 8.5 0.00036 16.2 4.9 10 24-33 61-70 (334)
396 1sgm_A Putative HTH-type trans 54.3 2.9 0.00012 19.5 0.7 21 13-33 7-27 (191)
397 3gwz_A MMCR; methyltransferase 54.3 5 0.00021 17.8 1.9 16 174-189 281-297 (369)
398 2cqx_A LAG1 longevity assuranc 54.3 8.6 0.00036 16.1 3.8 27 191-217 39-65 (72)
399 1x19_A CRTF-related protein; m 54.3 8.6 0.00036 16.1 4.9 13 21-33 81-93 (359)
400 3k69_A Putative transcription 53.9 8.7 0.00037 16.1 4.3 10 188-197 137-146 (162)
401 2hyj_A Putative TETR-family tr 53.3 5.4 0.00023 17.6 1.9 13 21-33 18-30 (200)
402 2hi3_A Homeodomain-only protei 53.1 8.9 0.00038 16.0 6.5 47 170-216 5-58 (73)
403 1ylf_A RRF2 family protein; st 52.6 9.1 0.00038 16.0 4.0 30 115-148 56-85 (149)
404 1neq_A DNA-binding protein NER 52.5 6.2 0.00026 17.1 2.1 39 177-215 11-49 (74)
405 1zyb_A Transcription regulator 52.5 9.1 0.00038 15.9 4.0 41 174-215 162-213 (232)
406 2juj_A E3 ubiquitin-protein li 51.9 3.1 0.00013 19.3 0.5 39 178-217 8-46 (56)
407 3lst_A CALO1 methyltransferase 51.6 8.6 0.00036 16.1 2.7 12 22-33 73-84 (348)
408 3k7a_M Transcription initiatio 51.5 2.5 0.00011 19.9 0.0 36 182-217 286-321 (345)
409 3d1n_I POU domain, class 6, tr 51.4 9.5 0.0004 15.8 3.8 44 174-217 100-149 (151)
410 3ccy_A Putative TETR-family tr 50.4 3.5 0.00015 18.9 0.6 18 172-189 178-197 (203)
411 3lsj_A DEST; transcriptional r 50.3 1.4 6E-05 21.7 -1.4 15 19-33 15-30 (220)
412 3b7h_A Prophage LP1 protein 11 50.0 9.9 0.00042 15.7 5.1 46 184-232 16-61 (78)
413 3dp7_A SAM-dependent methyltra 49.8 10 0.00042 15.7 4.7 10 24-33 70-79 (363)
414 2r3s_A Uncharacterized protein 49.4 10 0.00043 15.6 4.0 10 24-33 59-68 (335)
415 3mn2_A Probable ARAC family tr 49.3 10 0.00043 15.6 4.0 35 179-216 57-94 (108)
416 3fym_A Putative uncharacterize 49.3 10 0.00043 15.6 3.6 23 57-79 49-71 (130)
417 1ocp_A OCT-3; DNA-binding prot 49.2 10 0.00043 15.6 3.2 45 173-217 14-64 (67)
418 3k2n_A Sigma-54-dependent tran 48.7 10 0.00044 15.5 6.6 140 11-155 18-159 (177)
419 3dn7_A Cyclic nucleotide bindi 47.9 3.1 0.00013 19.3 0.0 25 188-216 168-192 (194)
420 1q1h_A TFE, transcription fact 46.5 11 0.00047 15.3 4.8 38 178-215 20-60 (110)
421 2np3_A Putative TETR-family re 45.9 3.5 0.00015 18.9 0.0 31 8-38 23-53 (212)
422 2key_A Putative phage integras 45.0 12 0.00049 15.2 4.3 46 171-234 49-95 (112)
423 3oou_A LIN2118 protein; protei 44.9 12 0.0005 15.2 5.7 23 180-202 61-84 (108)
424 2qco_A CMER; transcriptional r 44.3 1.5 6.2E-05 21.6 -2.1 12 180-191 196-207 (210)
425 3nrg_A TETR family transcripti 43.4 4.3 0.00018 18.3 0.1 12 22-33 20-31 (217)
426 3eup_A Transcriptional regulat 42.9 5.6 0.00024 17.5 0.7 17 203-219 186-202 (204)
427 2fd5_A Transcriptional regulat 42.5 6.1 0.00026 17.2 0.8 18 17-34 12-29 (180)
428 3cec_A Putative antidote prote 42.4 13 0.00054 14.9 4.7 29 183-211 26-54 (104)
429 1yz8_P Pituitary homeobox 2; D 42.1 13 0.00055 14.9 5.9 44 173-216 9-58 (68)
430 1zs4_A Regulatory protein CII; 42.1 13 0.00055 14.9 4.1 39 177-216 14-52 (83)
431 2iu5_A DHAS, hypothetical prot 41.6 5.4 0.00023 17.6 0.4 16 182-197 158-173 (195)
432 1o5l_A Transcriptional regulat 41.4 4.5 0.00019 18.1 0.0 28 188-215 164-191 (213)
433 3bwg_A Uncharacterized HTH-typ 40.9 13 0.00057 14.7 3.8 24 2-25 31-54 (239)
434 1bl0_A Protein (multiple antib 40.5 14 0.00058 14.7 4.8 34 179-215 66-100 (129)
435 2qc0_A Uncharacterized protein 40.2 14 0.00058 14.7 2.6 36 179-214 300-337 (373)
436 1kyz_A COMT, caffeic acid 3-O- 40.1 14 0.00058 14.6 2.6 13 22-34 78-90 (365)
437 2ofy_A Putative XRE-family tra 40.0 14 0.00059 14.6 7.3 50 181-233 20-69 (86)
438 3mkl_A HTH-type transcriptiona 38.3 15 0.00062 14.5 3.4 25 179-203 61-86 (120)
439 3him_A Probable transcriptiona 38.0 4.8 0.0002 17.9 -0.3 23 200-222 182-205 (211)
440 1e3o_C Octamer-binding transcr 37.6 15 0.00064 14.4 4.3 27 191-217 131-157 (160)
441 1fp2_A Isoflavone O-methytrans 37.3 15 0.00064 14.4 2.7 10 12-21 52-61 (352)
442 1r7j_A Conserved hypothetical 37.2 15 0.00065 14.3 5.0 37 179-215 11-47 (95)
443 1nr3_A MTH0916, DNA-binding pr 37.1 1.2 5.2E-05 22.1 -3.4 30 188-217 5-34 (122)
444 2fna_A Conserved hypothetical 36.5 16 0.00066 14.3 4.0 43 172-214 286-334 (357)
445 3e7l_A Transcriptional regulat 36.2 16 0.00067 14.2 5.7 39 177-219 19-59 (63)
446 3eyi_A Z-DNA-binding protein 1 36.2 16 0.00067 14.2 2.7 45 172-216 5-53 (72)
447 1v4r_A Transcriptional repress 35.6 14 0.00058 14.7 1.7 18 190-207 37-54 (102)
448 1y9q_A Transcriptional regulat 34.7 17 0.0007 14.1 3.4 23 186-208 22-44 (192)
449 1hw1_A FADR, fatty acid metabo 34.4 17 0.00071 14.0 4.0 25 190-214 33-57 (239)
450 3oio_A Transcriptional regulat 34.4 17 0.00071 14.0 5.6 38 176-213 7-48 (113)
451 1sfu_A 34L protein; protein/Z- 34.2 17 0.00072 14.0 3.3 28 187-214 28-55 (75)
452 2wv0_A YVOA, HTH-type transcri 33.8 17 0.00073 14.0 3.9 26 190-215 36-61 (243)
453 1i3j_A I-TEVI, intron-associat 33.4 18 0.00074 13.9 2.7 22 190-211 85-106 (116)
454 2jrt_A Uncharacterized protein 33.1 13 0.00056 14.8 1.3 17 218-234 34-50 (95)
455 1ntc_A Protein (nitrogen regul 32.8 18 0.00075 13.9 5.1 36 176-211 52-87 (91)
456 2p5t_A Putative transcriptiona 32.7 7.5 0.00032 16.5 0.0 25 187-211 13-37 (158)
457 2k9l_A RNA polymerase sigma fa 30.7 19 0.00081 13.6 4.0 41 174-214 26-74 (76)
458 1t6s_A Conserved hypothetical 30.4 19 0.00082 13.6 3.6 45 177-221 10-57 (162)
459 1hkq_A REPA, replication prote 28.9 21 0.00087 13.4 5.6 43 174-216 19-75 (132)
460 3lwf_A LIN1550 protein, putati 28.4 21 0.00088 13.4 5.6 36 179-214 30-70 (159)
461 1u8b_A ADA polyprotein; protei 27.4 22 0.00092 13.2 3.4 25 189-213 94-118 (133)
462 3edp_A LIN2111 protein; APC883 27.2 22 0.00093 13.2 5.3 36 180-215 17-60 (236)
463 3lsg_A Two-component response 26.9 22 0.00094 13.2 5.7 39 175-213 1-44 (103)
464 3f8m_A GNTR-family protein tra 26.9 22 0.00094 13.2 3.8 26 190-215 38-63 (248)
465 1eto_A FIS, factor for inversi 26.2 23 0.00096 13.1 5.7 36 176-211 59-94 (98)
466 2guz_A Mitochondrial import in 25.9 23 0.00098 13.1 2.3 28 189-216 11-39 (71)
467 2hq2_A Putative heme/hemoglobi 24.8 24 0.001 12.9 3.0 23 180-202 18-42 (354)
468 1mgt_A MGMT, protein (O6-methy 24.7 24 0.001 12.9 4.8 42 170-211 85-132 (174)
469 2wvf_A Hpnikr, putative nickel 24.1 25 0.0011 12.8 3.3 22 209-230 25-46 (148)
470 2hl7_A Cytochrome C-type bioge 22.4 27 0.0011 12.6 2.7 20 179-198 50-69 (84)
471 1xmk_A Double-stranded RNA-spe 22.1 27 0.0011 12.6 3.8 41 175-215 10-53 (79)
472 3oov_A Methyl-accepting chemot 22.1 27 0.0011 12.6 12.2 149 9-163 12-163 (169)
473 2bgc_A PRFA; bacterial infecti 21.7 28 0.0012 12.5 4.1 28 188-215 169-197 (238)
474 3lz8_A Putative chaperone DNAJ 21.3 16 0.00069 14.2 0.0 21 196-216 32-52 (329)
475 2w57_A Ferric uptake regulatio 21.2 28 0.0012 12.4 5.3 45 173-218 14-67 (150)
476 3keo_A Redox-sensing transcrip 20.8 29 0.0012 12.4 5.0 32 179-210 20-54 (212)
477 2qen_A Walker-type ATPase; unk 20.8 29 0.0012 12.4 5.3 42 174-215 280-327 (350)
478 1zg3_A Isoflavanone 4'-O-methy 20.6 29 0.0012 12.4 2.6 38 178-216 32-72 (358)
479 1z4h_A TORI, TOR inhibition pr 20.6 29 0.0012 12.4 3.1 20 192-211 14-33 (66)
No 1
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=100.00 E-value=4.3e-32 Score=246.39 Aligned_cols=219 Identities=18% Similarity=0.055 Sum_probs=170.2
Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCE
Q ss_conf 98622599999999999998583785899841777873102504422787789996248744412087999996179983
Q gi|254780693|r 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPI 87 (235)
Q Consensus 8 ~~~~~sl~dl~~~l~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~ 87 (235)
-+.+.+..++...+..+.+.+++++|+|+..... .....++|+.+|.+.|....|...||++.++.....|+
T Consensus 14 l~~a~~~~~l~~~l~~~~~~~Gf~~~~y~~~~~~--------~~~~~~~~p~~w~~~Y~~~~y~~~DP~~~~~~~~~~p~ 85 (236)
T 2q0o_A 14 LEAAQDGHMIKIALRSFAHSCGYDRFAYLQKDGT--------QVRTFHSYPGPWESIYLGSDYFNIDPVLAEAKRRRDVF 85 (236)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHTCCEEEEEEEETT--------EEEEEECSCHHHHHHHHHTTGGGTCHHHHHHHHCCSCE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC--------CEEEEECCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCC
T ss_conf 9848999999999999999819987999833887--------65787179999999999889920799999997489997
Q ss_pred EECCHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEECCCCCCCCHHH----HHHHHHHHHHHHHHHHHH
Q ss_conf 7310133146672136789965425855358997216887523454105887899899----999999999999999851
Q gi|254780693|r 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV----IIEAHGACYQVITDFLEL 163 (235)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 163 (235)
.|+..............+......+|..+|+++|+..+.+..+.+++........... ..................
T Consensus 86 ~w~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (236)
T 2q0o_A 86 FWTADAWPARGSSPLRRFRDEAISHGIRCGVTIPVEGSYGSAMMLTFASPERKVDISGVLDPKKAVQLLMMVHYQLKIIA 165 (236)
T ss_dssp EEESTTSCCSSCCHHHHHHHHHHHTTCCEEEEEEEECGGGCEEEEEEEESSSCCCCTTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 76721323357779999999999769801489998237887799996158763115778999999999999999999873
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 24678874449989999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 164 ~~~~~~~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
......+...||+||+|||+|+++|+|++|||.+|+||++||++|++||++||||+||+|||++|+++|||
T Consensus 166 ~~~~~~~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~h~~~i~~KLgv~nr~qava~A~~~GLI 236 (236)
T 2q0o_A 166 AKTVLNPKQMLSPREMLCLVWASKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAKDRGLV 236 (236)
T ss_dssp HTCCCCGGGSCCHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 33458973439987999999986699999999996999999999999999986899999999999986899
No 2
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=100.00 E-value=8.4e-31 Score=237.21 Aligned_cols=214 Identities=19% Similarity=0.130 Sum_probs=164.1
Q ss_pred CHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEECCH
Q ss_conf 59999999999999858378589984177787310250442278778999624874441208799999617998373101
Q gi|254780693|r 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 (235)
Q Consensus 13 sl~dl~~~l~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~~~~ 92 (235)
.-+.+...+..+.+.+++++|+|..... ......+||+..|.+.|....+...||++.++.....|+.|+..
T Consensus 17 ~~~~l~~~l~~~~~~~Gf~~~~~~~~~~--------~~~~~~~~~p~~w~~~Y~~~~~~~~DP~~~~~~~~~~p~~w~~~ 88 (234)
T 1l3l_A 17 DECILKTGLADIADHFGFTGYAYLHIQH--------RHITAVTNYHRQWQSTYFDKKFEALDPVVKRARSRKHIFTWSGE 88 (234)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEEEEET--------TEEEEEECSCHHHHHHHHHTTGGGTCHHHHHHHHCCSCEEEEHH
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEEECCC--------CCEEEECCCCHHHHHHHHHCCCHHCCHHHHHHHCCCCCEEEECH
T ss_conf 6999999999999977998799983278--------76578718998999999977961209899999748998795050
Q ss_pred HHHCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEECCCCCCCCHHHHH---HHHHHHHHHHHHHHHHCC-CCC
Q ss_conf 3314667213678996542585535899721688752345410588789989999---999999999999985124-678
Q gi|254780693|r 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVII---EAHGACYQVITDFLELFK-KRS 168 (235)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~ 168 (235)
............+.+....+|.+.|+++|++.+.+..+.+++++........... .................. ...
T Consensus 89 ~~~~~~~~~~~~~~~~a~~~g~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (234)
T 1l3l_A 89 HERPTLSKDERAFYDHASDFGIRSGITIPIKTANGFMSMFTMASDKPVIDLDREIDAVAAAATIGQIHARISFLRTTPTA 168 (234)
T ss_dssp HHTTTCCHHHHHHHHHHHTTTCSEEEEEEEECGGGCEEEEEEEESSSSCCCSSCCCHHHHHHHHHHHHHHHHHTTCCCSE
T ss_pred HHCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 20033687899999999983975158888506888569997436765035689999999999999999999862168988
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 874449989999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 169 ~~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
.....||+||+|||+|+++|+|++|||.+|+||++||++|++||++||||+||+|||++|+++|||
T Consensus 169 ~~~~~LT~RE~evL~~~a~G~s~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nr~qav~~A~~~glI 234 (234)
T 1l3l_A 169 EDAAWLDPKEATYLRWIAVGKTMEEIADVEGVKYNSVRVKLREAMKRFDVRSKAHLTALAIRRKLI 234 (234)
T ss_dssp ECCCCCCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 777789989999999997699999999996989999999999999986899999999999986999
No 3
>3c3w_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.70 E-value=4.3e-17 Score=139.48 Aligned_cols=65 Identities=29% Similarity=0.370 Sum_probs=62.2
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 74449989999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 170 ~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
+...||+||.|||+++++|+||+|||.+|+||++||++|+++|++|||++||+|||.+|.+.|++
T Consensus 146 ~~~~LT~RE~eVL~ll~~G~snkeIA~~L~iS~~TVk~h~~~I~~KLgv~nr~eav~~A~~~gl~ 210 (225)
T 3c3w_A 146 PLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKRS 210 (225)
T ss_dssp TTTTSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCCSSCHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 55679999999999999389888999997887999999999999996899999999999982998
No 4
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.70 E-value=5.7e-17 Score=138.59 Aligned_cols=63 Identities=35% Similarity=0.337 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 449989999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
..||+||.|||.|+++|+|++|||.+|+||++||++|++++++||||.||+|||++|.+.|||
T Consensus 196 ~~Ls~re~~il~~~~~G~~~~eia~~l~is~~tv~~h~~~~~~kl~~~~~~~~~~~a~~~~li 258 (258)
T 3clo_A 196 NILSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACRAAELMKLL 258 (258)
T ss_dssp TSSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 999989999999998599999999894999999999999999985899999999999985999
No 5
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulator; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=99.69 E-value=8.4e-17 Score=137.39 Aligned_cols=65 Identities=32% Similarity=0.387 Sum_probs=62.4
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 74449989999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 170 ~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
+.+.||+||.+||.|+++|+|++|||..|+||++||++|+++|++||||.||+|+|.+|.+.|||
T Consensus 8 ~~~~LT~rE~~vl~~l~~G~s~~eIA~~L~iS~~TV~~h~~~i~~Kl~v~~r~~lv~~a~~~Gli 72 (74)
T 1fse_A 8 SKPLLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMGEL 72 (74)
T ss_dssp CCCCCCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 99987999999999999279999999997989999999999999995899999999999996290
No 6
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.66 E-value=1.1e-16 Score=136.57 Aligned_cols=63 Identities=38% Similarity=0.429 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHC-CCC
Q ss_conf 449989999999998799978999994999889999999999980799789999999976-999
Q gi|254780693|r 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF-GYI 234 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~-Gli 234 (235)
..||+||+|||+++++|+||+|||.+|+||++||++|+++|++||||+||+|+|.+|.+. |+.
T Consensus 158 ~~LT~RE~eVL~ll~~G~snkeIA~~L~iS~~TVk~h~~~i~~KLgv~nr~el~~~A~~~~g~~ 221 (225)
T 3klo_A 158 AKLTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWAKNNIGIE 221 (225)
T ss_dssp HTSCHHHHHHHHHHTTTCCHHHHHHHTTCCHHHHHHHHHHHTTTSCCSSHHHHHHHHHHHCCC-
T ss_pred HHHCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC
T ss_conf 4422256543035533997999999978899999999999999868999999999999907977
No 7
>2krf_A Transcriptional regulatory protein COMA; activator, competence, DNA-binding, transcription regulation component regulatory system; NMR {Bacillus subtilis}
Probab=99.66 E-value=3e-16 Score=133.44 Aligned_cols=65 Identities=34% Similarity=0.354 Sum_probs=62.6
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 74449989999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 170 ~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
+.+.|||||.+||.|+++|+|++|||..|+||++||++|+++|++||||.||+|+|++|.+.|||
T Consensus 9 ~~~~Lt~rE~~vl~~~~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Kl~v~~r~elv~~A~~~Gli 73 (73)
T 2krf_A 9 EQDVLTPRECLILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL 73 (73)
T ss_dssp SSSSSCHHHHHHHHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHTCC
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
T ss_conf 87888999999999999589999984161888999999999999980999999999999995799
No 8
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=99.65 E-value=5.2e-16 Score=131.78 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=61.4
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 7444998999999999879997899999499988999999999998079978999999997699
Q gi|254780693|r 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 (235)
Q Consensus 170 ~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gl 233 (235)
+...||+||.+||.|+++|+|++|||..|+||++||++|+++|++|||+.||+|+|.+|.+.||
T Consensus 18 ~~~~LT~rE~~vl~lla~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~r~elv~~a~~~~L 81 (82)
T 1je8_A 18 DVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERI 81 (82)
T ss_dssp CGGGSCHHHHHHHHHHTTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
T ss_conf 7341999999999999928999999989795999999999999998389999999999999479
No 9
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=99.65 E-value=3.2e-16 Score=133.23 Aligned_cols=65 Identities=32% Similarity=0.440 Sum_probs=62.5
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 74449989999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 170 ~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
..+.||+||+|||.|+++|+|++|||.+|+||++||++|+++|++||||.||+|+|.+|.+.|||
T Consensus 26 ~~~~LT~rE~evl~ll~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Kl~v~~r~elv~~a~~~gli 90 (91)
T 2rnj_A 26 LYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 90 (91)
T ss_dssp TGGGCCSHHHHHHHHHHTTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHTCC
T ss_pred HHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
T ss_conf 42617999999999999289999999997889999999999999990999999999999994899
No 10
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=99.64 E-value=1.1e-15 Score=129.41 Aligned_cols=65 Identities=28% Similarity=0.382 Sum_probs=62.4
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 74449989999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 170 ~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
....||+||.+||.|+++|+|++|||..|+||++||++|+++|++|||++||+|+|.+|.+.|||
T Consensus 31 ~~~~LT~rE~~vl~ll~~G~s~~eIA~~l~iS~~TV~~~~~~i~~KL~v~~~~elv~~a~~~Gli 95 (99)
T 1p4w_A 31 GDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDIALLNYLSSVSMT 95 (99)
T ss_dssp SSSSCCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHTCS
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
T ss_conf 88998999999999999389999997772998999999999999980999999999999996899
No 11
>3c57_A Two component transcriptional regulatory protein DEVR; response regulator, two-component regulatory system, DNA- binding protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=99.63 E-value=1.9e-16 Score=134.82 Aligned_cols=65 Identities=29% Similarity=0.370 Sum_probs=62.5
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 74449989999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 170 ~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
+...||+||.+||.|+++|+|++|||..|+||++||++|+++|++||||.||+|+|.+|.+.|+|
T Consensus 24 pl~~LT~rE~evl~ll~~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv~~r~elv~~a~~~gl~ 88 (95)
T 3c57_A 24 PLSGLTDQERTLLGLLSEGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERRTQAAVFATELKRS 88 (95)
T ss_dssp ---CCCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCC-----------
T ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 63304999999999999079999998794978999999999999997899999999999993999
No 12
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.63 E-value=1.5e-15 Score=128.56 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=61.2
Q ss_pred CCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 7444998999999999879997899999499988999999999998079978999999997699
Q gi|254780693|r 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 (235)
Q Consensus 170 ~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gl 233 (235)
....||+||.+||+++++|+||++||.+|+||++||++|++++++|||++||+|++.+|.+.||
T Consensus 151 ~~~~LT~rE~~vl~ll~~g~sn~~IA~~L~iS~~TV~~h~~~i~~KL~v~~r~e~~~~a~~~~l 214 (215)
T 1a04_A 151 DVNQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERI 214 (215)
T ss_dssp CGGGSCHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
T ss_conf 7020898999999999986631267999788687999999999998099988999999998489
No 13
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=99.61 E-value=1.1e-15 Score=129.39 Aligned_cols=62 Identities=26% Similarity=0.286 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 49989999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
.||+||.+||.|+++|+|++|||..|+||++||++|+++|++||||+||+|+|.+|++.||+
T Consensus 16 ~LT~rE~~vl~~l~~G~s~~eIA~~l~iS~~TV~~~~~~i~~Klgv~~r~elv~~a~~~Gl~ 77 (79)
T 1x3u_A 16 TLSERERQVLSAVVAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAKSLPHLVRMALAGGFG 77 (79)
T ss_dssp HHCHHHHHHHHHHTTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 59999999999999079999999997988989999999999980899999999999994999
No 14
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=99.55 E-value=9.7e-15 Score=122.68 Aligned_cols=58 Identities=33% Similarity=0.411 Sum_probs=57.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 9999999998799978999994999889999999999980799789999999976999
Q gi|254780693|r 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 177 RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
||.|||.|+++|+|++|||..|+||++||++|+++|++|||+.||+|++.+|.+.|||
T Consensus 2 RE~evl~ll~~G~s~~eIA~~l~iS~~TV~~h~~~i~~Klgv~~r~elv~~a~~~gli 59 (61)
T 2jpc_A 2 RERQVLKLIDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRLI 59 (61)
T ss_dssp HHHHHHHHHHTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCC
T ss_conf 7999999998279999999896989999999999999881999999999999996495
No 15
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.43 E-value=3.8e-13 Score=111.31 Aligned_cols=63 Identities=25% Similarity=0.281 Sum_probs=59.0
Q ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 444998999999999879997899999499988999999999998079978999999997699
Q gi|254780693|r 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gl 233 (235)
...||+||.+|++++++|+||+|||..|++|++||++|++++++|||++||+|+|..|.+...
T Consensus 140 ~~~Lt~re~evl~ll~~g~~~~eIa~~l~iS~~TV~~h~~~i~~KL~~~~~~elv~~~~~~~~ 202 (208)
T 1yio_A 140 FSSLTGREQQVLQLTIRGLMNKQIAGELGIAEVTVKVHRHNIMQKLNVRSLANLVHLVEKYES 202 (208)
T ss_dssp HHTSCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHC--
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 232246899999999815649999997287689999999999998099999999999999731
No 16
>3ix3_A Transcriptional activator protein LASR; quorum sensing receptor, triphenyl mimics, DNA- binding, quorum sensing; HET: OHN; 1.40A {Pseudomonas aeruginosa} PDB: 3ix4_A* 3ix8_A* 3jpu_A* 2uv0_E*
Probab=99.37 E-value=5.8e-11 Score=95.77 Aligned_cols=157 Identities=13% Similarity=0.035 Sum_probs=121.1
Q ss_pred CCCHHCCHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 97002119862259999999999999858378589984177787310250442278778999624874441208799999
Q gi|254780693|r 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 (235)
Q Consensus 1 ~~~~~~~~~~~~sl~dl~~~l~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~ 80 (235)
|.+.++.-+++++..|+...+..+.+.+++++|+|........ ......+.+||+..|.+.|...++...||++.++
T Consensus 3 ~~d~f~~l~~a~~~~el~~~l~~~~~~lGf~~~~y~~~~~~~~---~~~~~~~~~nyP~~W~~~Y~~~~y~~~DPv~~~~ 79 (173)
T 3ix3_A 3 LVDGFLELERSSGKLEWSAILQKMASDLGFSKILFGLLPKDSQ---DYENAFIVGNYPAAWREHYDRAGYARVDPTVSHC 79 (173)
T ss_dssp ----CHHHHHCCHHHHHHHHHHHHHHHTTCSEEEEEEECTTCC---CGGGSEEEECSCHHHHHHHHHTTGGGTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC---CCCCEEEECCCCHHHHHHHHHCCCEEECHHHHHH
T ss_conf 4799999996899999999999999984999799998528888---8776689758998999999988996369799987
Q ss_pred HHCCCCEEECCHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEECCCCCCCCHHH------HHHHHHHHH
Q ss_conf 61799837310133146672136789965425855358997216887523454105887899899------999999999
Q gi|254780693|r 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV------IIEAHGACY 154 (235)
Q Consensus 81 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 154 (235)
..+..|+.|+..... ......+.+....+|.+.|+++|++.+.+..+.+++++........+ +..+..++.
T Consensus 80 ~~~~~P~~W~~~~~~---~~~~~~~~~~a~~~Gl~~G~tvP~~~~~g~~~~~s~a~~~~~~~~~~~~~~~~~~~l~lla~ 156 (173)
T 3ix3_A 80 TQSVLPIFWEPSIYQ---TRKQHEFFEEASAAGLVYGLTMPLHGARGELGALSLSVEAENRAEANRFMESVLPTLWMLKD 156 (173)
T ss_dssp HHCSSCEECCGGGCC---SHHHHHHHHHHHHTTCCSEEEEEEECTTCCEEEEEEECCCSSHHHHHHHHHTTHHHHHHHHH
T ss_pred HCCCCCEECCCCCCC---CCHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 568999682764122---82589999999976997644999865999989999961788811899999998999999999
Q ss_pred HHHHHHHHH
Q ss_conf 999999851
Q gi|254780693|r 155 QVITDFLEL 163 (235)
Q Consensus 155 ~~~~~~~~~ 163 (235)
+++.....+
T Consensus 157 ~~~~~~~~l 165 (173)
T 3ix3_A 157 YALQSGAGL 165 (173)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHC
T ss_conf 999999843
No 17
>2avx_A Regulatory protein SDIA; homoserine lactone, quorum sensing, transcription; HET: HTF; NMR {Escherichia coli}
Probab=99.24 E-value=2.8e-10 Score=90.91 Aligned_cols=150 Identities=11% Similarity=0.028 Sum_probs=115.3
Q ss_pred CHHHHCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 19862259999999999999858378589984177787310250442278778999624874441208799999617998
Q gi|254780693|r 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLP 86 (235)
Q Consensus 7 ~~~~~~sl~dl~~~l~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p 86 (235)
.=+++++.+++...+..+.+.+++++|++...... +..+......+||+..|.+.|...++...||++.++..+..|
T Consensus 16 ~l~~a~s~~~l~~~l~~~~~~lGf~~~~~~~~~~~---~~~~~~~~~~~nyP~~W~~~Y~~~~~~~~DPv~~~~~~~~~p 92 (171)
T 2avx_A 16 RFQRMETAEEVYHEIELQAQQLEYDYYSLCVRHPV---PFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGH 92 (171)
T ss_dssp HHHHTCSHHHHHHHHHHHHHTTTCSCEEEEEEECC---TTSCCEEEEEECCCHHHHHHHHHTTGGGTCGGGCTTTCTTSE
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC---CCCCCCEEEEECCCHHHHHHHHHCCCEECCHHHHHHHCCCCC
T ss_conf 99958999999999999999859988999864589---988876689807998999999978884539378898557998
Q ss_pred EEECCHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEECCCCCCCC----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 37310133146672136789965425855358997216887523454105887899----89999999999999999985
Q gi|254780693|r 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLE 162 (235)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 162 (235)
+.|++... ..+ .-+......+|+..|+++|++.+.+..+.+++++...... .+....+..++..++....+
T Consensus 93 ~~Ws~~~~----~~~-~~~~~~a~~~Gl~~G~tvpv~~~~g~~g~ls~a~~~~~~~~~~~~e~~~~l~~la~~ah~a~~r 167 (171)
T 2avx_A 93 LMWNDDLF----SEA-QPLWEAARAHGLRRGVTQYLMLPERALGFLSFSRCSAREIPILSDELQLKMQLLVRESLMALMR 167 (171)
T ss_dssp EECCTTTT----SSC-HHHHHHHHHHTCCEEEEEEECCTTCCEEEEEEEESCCCCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCC----HHH-HHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86784524----407-9999999984997459999887999879999853788787000388999999999999999972
Q ss_pred HC
Q ss_conf 12
Q gi|254780693|r 163 LF 164 (235)
Q Consensus 163 ~~ 164 (235)
+.
T Consensus 168 l~ 169 (171)
T 2avx_A 168 LN 169 (171)
T ss_dssp HH
T ss_pred HH
T ss_conf 20
No 18
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.00 E-value=1.3e-05 Score=57.73 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 49989999999998-7999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAG-DGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
-|++++++|+.|.. +|+|..|||..||||+.||+.|+.++++||.
T Consensus 25 lLpe~qR~v~~l~~~e~ls~~EIA~~lgiS~~aV~~~l~RA~~~L~ 70 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGDLVE 70 (113)
T ss_dssp GSCHHHHHHHHHHHTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 6999999999999991999999999989699999999999999999
No 19
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative stress, transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=97.93 E-value=0.0001 Score=51.20 Aligned_cols=44 Identities=27% Similarity=0.396 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 4998999999999-8799978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.|++++++|+.+. -+|+|.+|||.+||||++||+.++.++.+||
T Consensus 37 ~L~~~~r~vi~l~~~~g~s~~eIA~~lgis~~tV~~~l~Ra~~~L 81 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 799999999999999399999999998969999999999999999
No 20
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=97.84 E-value=3.7e-05 Score=54.39 Aligned_cols=44 Identities=27% Similarity=0.484 Sum_probs=42.0
Q ss_pred CCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 998999999999-87999789999949998899999999999807
Q gi|254780693|r 174 LTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 174 LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
|++++++|+.|. -+|+|.+|||..||||+.||+.|+.++.+||.
T Consensus 23 L~~~qR~vi~L~~~~~ls~~EIA~~lgis~~~V~~~l~Ra~~~L~ 67 (113)
T 1s7o_A 23 LTDKQMNYIELYYADDYSLAEIADEFGVSRQAVYDNIKRTEKILE 67 (113)
T ss_dssp SCHHHHHHHHHHHHTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999999997312999999989799999999999999997
No 21
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn- helix motif; 3.00A {Mycobacterium tuberculosis H37RV}
Probab=97.84 E-value=3.4e-05 Score=54.65 Aligned_cols=48 Identities=25% Similarity=0.212 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 44499899999999-9879997899999499988999999999998079
Q gi|254780693|r 171 ARNLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 171 ~~~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~ 218 (235)
...|+|++++|+.+ .-+|+|.+|||.+||||+.||+.++.++++||..
T Consensus 13 l~~Lp~~~r~v~~l~~~~g~s~~EIA~~lgis~~tvk~~l~Ra~~~Lr~ 61 (70)
T 2o8x_A 13 IADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp TTSSCHHHHHHHHHHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9869999999999899909999999999897999999999999999999
No 22
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=97.63 E-value=0.0001 Score=51.30 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 499899999999987999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.+++.++.++.+..+|+|.+|||..||||+.||+.++.++++||-
T Consensus 109 l~~~~~~~~~~~~~~g~s~~EIA~~lgis~~~V~~~~~Ra~~kl~ 153 (164)
T 3mzy_A 109 NFSKFEKEVLTYLIRGYSYREIATILSKNLKSIDNTIQRIRKKSE 153 (164)
T ss_dssp HSCHHHHHHHHHHTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 576999999876562389999999989199999999999999999
No 23
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=97.44 E-value=0.00025 Score=48.53 Aligned_cols=44 Identities=30% Similarity=0.289 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 4998999999999-8799978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.|++++++++.+. -.|+|.+|||..||+|+.||+.++.++++||
T Consensus 140 ~L~~~~r~ii~l~y~~g~s~~eIA~~lg~s~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 140 SLPEDLRMAITLRELDGLSYEEIAAIMDCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp HSCHHHHHHHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 099999999999998398999999998939999999999999999
No 24
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=97.40 E-value=0.00032 Score=47.67 Aligned_cols=44 Identities=32% Similarity=0.362 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 4998999999999-8799978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.|++||++|+.+. -+|+|-+|||..||||..+|+...+++.+||
T Consensus 187 ~L~~rer~Ii~~ry~~~~tl~eIA~~lgiS~~rVrqi~~~Al~kL 231 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEELPAKEVAKILETSVSRVSQLKAKALERL 231 (239)
T ss_dssp TSCHHHHHHHHHHHTSCCCHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 799999999999926999999999998959999999999999999
No 25
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc binding transcription factor; 2.40A {Rhodobacter sphaeroides 2} PDB: 2z2s_A
Probab=97.33 E-value=6.2e-05 Score=52.79 Aligned_cols=44 Identities=25% Similarity=0.314 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 4998999999999-8799978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLA-GDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.|++++++|+.+. .+|+|.+|||.+||||+.||+.++.++++||
T Consensus 135 ~L~~~~r~vl~l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~kL 179 (184)
T 2q1z_A 135 RLPEAQRALIERAFFGDLTHRELAAETGLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp TSCHHHHHHHHHHHHSCCSSCCSTTTCCCCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 499999999999999299999999998939999999999999999
No 26
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=97.13 E-value=0.00078 Score=44.96 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHCCC----CHHHHHHHHC---CCHHHHHHHHHHHHHHCCCCC
Q ss_conf 49989999999998799----9789999949---998899999999999807997
Q gi|254780693|r 173 NLTERETSCLQLAGDGY----TSEEIAEKLG---LSVHTVNAYLGSATVKLDAVN 220 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G~----t~~eIA~~L~---iS~~TV~~hl~~i~~KLg~~n 220 (235)
.||++|.++|..++++. |.++|...+. ++.+||+.|+.++++||+...
T Consensus 145 ~LT~~E~~iL~~L~~~~g~vvsr~~l~~~vw~~~~~~~tv~~~I~rLRkKL~~~~ 199 (220)
T 1p2f_A 145 HLPKKEFEILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIEDDP 199 (220)
T ss_dssp CCCHHHHHHHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCSST
T ss_pred CCCHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 2899999999999848996781999987860788886679999999999730078
No 27
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H
Probab=97.04 E-value=0.0016 Score=42.69 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=45.4
Q ss_pred CCCCCHHHHHHHHHHH-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CCHHH
Q ss_conf 4449989999999998-----79997899999499988999999999998079-97899
Q gi|254780693|r 171 ARNLTERETSCLQLAG-----DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA-VNRIQ 223 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a-----~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~-~nR~q 223 (235)
...|++||++|+.+-= +.+|-+|||..||||...|+...+++.+||-- .++.+
T Consensus 8 l~~L~~rEr~Ii~~ryGl~~~~~~tl~eIa~~lgiS~erVrqi~~~al~kLr~~~~~~~ 66 (73)
T 1ku3_A 8 LSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTR 66 (73)
T ss_dssp TTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87299999999999818999998789999999896999999999999999988587789
No 28
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=96.99 E-value=0.0016 Score=42.66 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHH-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 449989999999998-----799978999994999889999999999980799789
Q gi|254780693|r 172 RNLTERETSCLQLAG-----DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 (235)
Q Consensus 172 ~~LT~RE~evL~l~a-----~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~ 222 (235)
..|++||++|+.+-= +.+|-+|||..||||...|+.--+++++||--..+.
T Consensus 4 ~~L~~rEr~Ii~~ryGl~~~~~~tl~eia~~lgvS~erVrqie~~Al~kLr~~~~~ 59 (68)
T 2p7v_B 4 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 59 (68)
T ss_dssp CCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGG
T ss_pred HCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34999999999998389999977899999998969999999999999998826789
No 29
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=96.98 E-value=0.0012 Score=43.59 Aligned_cols=45 Identities=29% Similarity=0.402 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHH-----HCCC--CHHHHHHHHCC-CHHHHHHHHHHHHHHCCC
Q ss_conf 4998999999999-----8799--97899999499-988999999999998079
Q gi|254780693|r 173 NLTERETSCLQLA-----GDGY--TSEEIAEKLGL-SVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 173 ~LT~RE~evL~l~-----a~G~--t~~eIA~~L~i-S~~TV~~hl~~i~~KLg~ 218 (235)
.||+||.+||.++ ..|+ |-.|||..+|+ |..||..|++.+.+ .|.
T Consensus 3 ~LT~kq~~il~~I~~~~~~~g~~PS~~Eia~~~GikS~s~v~~~l~~L~~-~G~ 55 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKALAR-KGV 55 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHHHHH-TTS
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHHHHH-CCC
T ss_conf 45999999999999999982989669999998499972899999998876-385
No 30
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix-turn-helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1
Probab=96.73 E-value=0.0016 Score=42.75 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHCCC----CHHHHHHHH-----CCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 49989999999998799----978999994-----999889999999999980799789
Q gi|254780693|r 173 NLTERETSCLQLAGDGY----TSEEIAEKL-----GLSVHTVNAYLGSATVKLDAVNRI 222 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G~----t~~eIA~~L-----~iS~~TV~~hl~~i~~KLg~~nR~ 222 (235)
.||++|.++|.++++.. |.++|...+ .++.+||+.|+.++++||+.....
T Consensus 151 ~Lt~~E~~lL~~L~~~~~~vvsr~~L~~~vwg~~~~~~~~tl~~~I~rLR~KL~~~~~~ 209 (225)
T 1kgs_A 151 DLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDKGFKK 209 (225)
T ss_dssp CCCHHHHHHHHHHHHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHTTCSS
T ss_pred ECCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 26579999999987524344429999998717777876576999999999984577999
No 31
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=96.72 E-value=0.0017 Score=42.54 Aligned_cols=48 Identities=23% Similarity=0.379 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHCC----CCHHHHHHHH-----CCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 4998999999999879----9978999994-----9998899999999999807997
Q gi|254780693|r 173 NLTERETSCLQLAGDG----YTSEEIAEKL-----GLSVHTVNAYLGSATVKLDAVN 220 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G----~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLg~~n 220 (235)
.||++|.++|.++++. .|.++|...+ ..+.+||+.|+.++++||+..+
T Consensus 159 ~LT~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~rtvd~~I~rLRkKL~~~~ 215 (233)
T 1ys7_A 159 DLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEAGG 215 (233)
T ss_dssp CCCHHHHHHHHHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHCC-
T ss_pred ECCCHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 647047899999985378888199999998486778884769999999999717789
No 32
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=96.64 E-value=0.017 Score=35.40 Aligned_cols=51 Identities=29% Similarity=0.382 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CCHHH
Q ss_conf 4998999999999-----879997899999499988999999999998079-97899
Q gi|254780693|r 173 NLTERETSCLQLA-----GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA-VNRIQ 223 (235)
Q Consensus 173 ~LT~RE~evL~l~-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~-~nR~q 223 (235)
.|++||++|+.+- -+.+|-+|||..||||...|+...+++++||-- .+|.+
T Consensus 375 ~L~~REr~II~~RfGl~~~~~~Tl~EIg~~lgvSreRVrQIe~kAL~KLR~~~~r~~ 431 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTR 431 (438)
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 599999999997077789985039999999897999999999999999886778689
No 33
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=96.61 E-value=0.00026 Score=48.30 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=42.2
Q ss_pred CCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 4499899999999-98799978999994999889999999999980
Q gi|254780693|r 172 RNLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 172 ~~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
..|++||++|+.+ .-.|+|-+|||..||||+.+|....+++.+||
T Consensus 197 ~~L~~~er~Vi~l~y~~~~t~~EIA~~lgiS~~rV~qi~~~Al~kL 242 (243)
T 1l0o_C 197 EELDERERLIVYLRYYKDQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp ----------------------------------------------
T ss_pred HHCCHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 8599999999999806999899999998949999999999999862
No 34
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=96.56 E-value=0.0045 Score=39.51 Aligned_cols=53 Identities=23% Similarity=0.281 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHHH-----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 44998999999999-----879997899999499988999999999998079978999
Q gi|254780693|r 172 RNLTERETSCLQLA-----GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 (235)
Q Consensus 172 ~~LT~RE~evL~l~-----a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qa 224 (235)
..|++||++|+.+- -..+|-.|||..||||..-|+..-+++.+||.-..+.+.
T Consensus 17 ~~L~~rE~~Vi~~rfGL~~~~~~Tl~eI~~~lgiSreRVRQie~~Al~kLr~~~~~~~ 74 (87)
T 1tty_A 17 KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKY 74 (87)
T ss_dssp TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHH
T ss_pred HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 6499999999999807889996579999989598899999999999999867078899
No 35
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=96.55 E-value=0.0042 Score=39.74 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHH-----CCC--CHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 49989999999998-----799--978999994999889999999999980799
Q gi|254780693|r 173 NLTERETSCLQLAG-----DGY--TSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 (235)
Q Consensus 173 ~LT~RE~evL~l~a-----~G~--t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~ 219 (235)
.||+||++||.++. .|+ |.+|||..+|+|..++-.|+.. ..|.|.-
T Consensus 2 ~LT~kq~~il~~I~~~~~~~G~~PS~reIa~~~Giss~s~v~~L~~-Le~kG~i 54 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHLIA-LEKKGYI 54 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHH-HHHTTSE
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHH-HHHCCCH
T ss_conf 9898999999999999998498966999999829996457888999-9875830
No 36
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H 1ku2_A 3lev_A* 3les_A*
Probab=96.43 E-value=0.02 Score=34.87 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHH---H--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999---8--7999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLA---G--DGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~---a--~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.|++||++|+.+- . ..+|-+|||..||||...|+.--+++++||-
T Consensus 360 ~L~~REr~II~lRfGL~~~~~~Tl~EIg~~lgvSreRVrQIe~~AL~KLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 59999999999706678998603999999989799999999999999988
No 37
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=96.09 E-value=0.011 Score=36.66 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=41.1
Q ss_pred CCCHHHHHHHHHHHCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCCC
Q ss_conf 4998999999999879----99789999949-----998899999999999807997
Q gi|254780693|r 173 NLTERETSCLQLAGDG----YTSEEIAEKLG-----LSVHTVNAYLGSATVKLDAVN 220 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G----~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLg~~n 220 (235)
.||++|.++|.++++. .|.++|...+. .+.+||+.|+.++++||+...
T Consensus 153 ~LT~~E~~lL~~L~~~~g~vvsr~~l~~~vwg~~~~~~~~tld~~I~rLRkKL~~~~ 209 (238)
T 2gwr_A 153 SLTPLEFDLLVALARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEKDP 209 (238)
T ss_dssp CCCHHHHHHHHHHHHSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCSST
T ss_pred ECCHHHHHHHHHHHHCCCCEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 568999999999976799708599999874477668874769999999999753178
No 38
>1tlh_B Sigma-70, RNA polymerase sigma factor RPOD; anti-sigma, transcription; NMR {Escherichia coli} SCOP: a.4.13.2
Probab=96.06 E-value=0.0061 Score=38.56 Aligned_cols=52 Identities=25% Similarity=0.331 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHH-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 74449989999999998-----79997899999499988999999999998079978
Q gi|254780693|r 170 AARNLTERETSCLQLAG-----DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 (235)
Q Consensus 170 ~~~~LT~RE~evL~l~a-----~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR 221 (235)
....|++||++|+.+-= .-+|-+|||..||||...|+.--.++.+||--..+
T Consensus 15 ~l~~L~~rEr~Il~~ryGl~~~~~~tl~eIa~~lgvSrerVRQie~~Al~kLr~~~~ 71 (81)
T 1tlh_B 15 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 71 (81)
T ss_dssp TTTTCCHHHHHHHHHHTCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSSCC
T ss_pred HHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHH
T ss_conf 997099999999999827899985579999999897999999999999999857067
No 39
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=95.97 E-value=0.017 Score=35.49 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=26.2
Q ss_pred CCCCHHHH-HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 44998999-9999998799978999994999889999999
Q gi|254780693|r 172 RNLTERET-SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 172 ~~LT~RE~-evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~ 210 (235)
..||+-|+ +|..+..+|+|..+||..||+|..||...++
T Consensus 5 ~~lt~~~R~~I~~l~~~G~s~~~IAk~lg~s~stV~r~lk 44 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLK 44 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 8799999999999999799999999998957899999999
No 40
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D domain swapping; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=95.72 E-value=0.012 Score=36.59 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCC
Q ss_conf 4998999999999879----99789999949-----99889999999999980799
Q gi|254780693|r 173 NLTERETSCLQLAGDG----YTSEEIAEKLG-----LSVHTVNAYLGSATVKLDAV 219 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G----~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLg~~ 219 (235)
.||++|.++|.+++.. .|.++|...+. .+.+||+.|+.++++||+..
T Consensus 156 ~LT~~E~~lL~~L~~~~~~vvsr~~l~~~vwg~~~~~~~~tv~~~I~rLRkKL~~~ 211 (230)
T 2oqr_A 156 TLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEAD 211 (230)
T ss_dssp CCCHHHHHHHHHHHHTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCSS
T ss_pred ECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 17999999999998189986269999998639776888677999999999974217
No 41
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.5
Probab=95.48 E-value=0.035 Score=33.17 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 899999999987999789999949998899999999999
Q gi|254780693|r 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 176 ~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
|-=++||.++.+|++..||+..|++|..||.+|++.+..
T Consensus 31 p~R~~IL~~L~~~~~~~eLa~~lg~s~stvs~HL~~L~~ 69 (96)
T 1y0u_A 31 PVRRKILRMLDKGRSEEEIMQTLSLSKKQLDYHLKVLEA 69 (96)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 899999998357997999999989199899999999998
No 42
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.43 E-value=0.028 Score=33.88 Aligned_cols=47 Identities=19% Similarity=0.168 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 449989999999998--799978999994999889999999999980799
Q gi|254780693|r 172 RNLTERETSCLQLAG--DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 (235)
Q Consensus 172 ~~LT~RE~evL~l~a--~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~ 219 (235)
.+||..|.+||..+. .|.|..|||..+|+|..||..+++++-++ |.-
T Consensus 148 ~~ls~~~~~iL~~L~~~~~~s~~ela~~l~~s~~tv~r~l~~Le~~-GlV 196 (244)
T 2wte_A 148 RDYSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELKKF-GIL 196 (244)
T ss_dssp SCCCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHHHT-TSE
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC-CCE
T ss_conf 2999999999999997799899999999797988999999999988-999
No 43
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bonds; 2.05A {Sulfolobus tokodaii str} SCOP: a.4.5.50
Probab=95.42 E-value=0.025 Score=34.21 Aligned_cols=43 Identities=28% Similarity=0.267 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHH--CC-CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 49989999999998--79-997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAG--DG-YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a--~G-~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+||+.+.+||..+. .| .|..|||..+++|..||..|++++..+
T Consensus 18 gLs~~~~~iL~~L~~~~~~~t~~eia~~~~~~~~tvs~~l~~L~~~ 63 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIEL 63 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 9599999999999975989899999999897885899999999988
No 44
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii OT3} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=95.13 E-value=0.04 Score=32.76 Aligned_cols=31 Identities=3% Similarity=-0.216 Sum_probs=10.6
Q ss_pred CCEEECCHHHHCCCCCHH-HHHHHHHHHCCCC
Q ss_conf 983731013314667213-6789965425855
Q gi|254780693|r 85 LPIIWQSIQEETVIESSG-QLSVRLEGGLLPF 115 (235)
Q Consensus 85 ~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 115 (235)
.|.....+....+..... ..........|..
T Consensus 32 ~~~t~~ela~~l~~s~~~v~~HL~~L~~~Glv 63 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEAGLV 63 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 99679999999891988999999999888982
No 45
>1j5y_A Transcriptional regulator, biotin repressor family; structural genomics, TM1602, JCSG, conserved hypothetical protein, PSI; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=95.06 E-value=0.03 Score=33.66 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHC--C-CCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99899999999987--9-997899999499988999999999998079
Q gi|254780693|r 174 LTERETSCLQLAGD--G-YTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 174 LT~RE~evL~l~a~--G-~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~ 218 (235)
=++|..++|.++.+ | .|..|+|..||||++||+..++.+.. -|.
T Consensus 19 k~eR~~~Il~~L~~~~~~vs~~eLa~~l~vS~~TIrrdi~~L~~-~G~ 65 (187)
T 1j5y_A 19 RQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRS-LGY 65 (187)
T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHH-HTC
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH-CCC
T ss_conf 99999999999998599676999999979899999999999997-799
No 46
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymerase, holoenzyme, sigma70, open complex, CAP, CRP, CAMP-dependent; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=94.97 E-value=0.0096 Score=37.18 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=46.2
Q ss_pred CCCCHHHHHHHHHHH-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 449989999999998-----799978999994999889999999999980799789
Q gi|254780693|r 172 RNLTERETSCLQLAG-----DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 (235)
Q Consensus 172 ~~LT~RE~evL~l~a-----~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~ 222 (235)
..|++||+.|+++-= .++|-+|||.+||||.--|+.-.+++.+||--.+|.
T Consensus 549 ~~L~~re~~vi~~r~~~~~~~~~t~~ei~~~~~vs~~rv~qi~~~al~kLr~~~~~ 604 (613)
T 3iyd_F 549 AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 604 (613)
T ss_dssp TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTSCSSS
T ss_pred HCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHH
T ss_conf 27999999999998189999984599999998959999999999999997527799
No 47
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=94.95 E-value=0.019 Score=35.03 Aligned_cols=38 Identities=24% Similarity=0.433 Sum_probs=32.8
Q ss_pred CCCCHHH-HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 4499899-9999999879997899999499988999999
Q gi|254780693|r 172 RNLTERE-TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 (235)
Q Consensus 172 ~~LT~RE-~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl 209 (235)
..||+.+ .++.++++.|.|..+||..+|||..|+..|+
T Consensus 4 ~kLt~~q~~~a~~l~~~G~s~~~iA~~~gVsr~TlYryl 42 (52)
T 1jko_C 4 RAINKHEQEQISRLLEKGHPRQQLAIIFGIGVSTLYRYF 42 (52)
T ss_dssp CSSCTTHHHHHHHHHHTTCCHHHHHHTTSCCHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHC
T ss_conf 879999999999999978989999999797999999985
No 48
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=94.80 E-value=0.027 Score=33.95 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=32.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 99999998799978999994999889999999999980799789
Q gi|254780693|r 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 (235)
Q Consensus 179 ~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~ 222 (235)
.+|..+...|+|.++||..||||..||..+ .+.-|.++..
T Consensus 166 ~~I~~l~~~G~s~~~IA~~l~is~~Tv~R~----l~~~Gl~~~~ 205 (209)
T 2r0q_C 166 HRVVEMLEEGQAISKIAKEVNITRQTVYRI----KHDNGLSSHH 205 (209)
T ss_dssp HHHHHHHHTTCCHHHHHHHHTCCHHHHHHH----HTTCC-----
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHH----HHHCCCCCCC
T ss_conf 999999987599999999989699999999----9977997235
No 49
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=94.61 E-value=0.078 Score=30.68 Aligned_cols=43 Identities=14% Similarity=0.186 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4998999999999879--997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGDG--YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.|..-.+++|+.+.+. .|..+||+.+|+|+.||..+++++.++
T Consensus 5 ~lD~~D~~Il~~L~~d~R~s~~~ia~~lg~s~~tv~~Ri~rL~~~ 49 (152)
T 2cg4_A 5 LIDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQA 49 (152)
T ss_dssp CCCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 568999999999998489999999999891999999999999736
No 50
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structural genomics; 1.99A {Neisseria meningitidis MC58} PDB: 2p6s_A 2p6t_A
Probab=94.59 E-value=0.079 Score=30.65 Aligned_cols=44 Identities=20% Similarity=0.220 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 44998999999999879--997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAGDG--YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
-.|..-++++|+.+.+. .|..+||..+|+|+.||+..++++.++
T Consensus 6 ~~LD~~D~~Il~~L~~d~R~s~~eiA~~~gls~~tv~~Ri~rLe~~ 51 (162)
T 2p5v_A 6 LTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDA 51 (162)
T ss_dssp CCCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 9808999999999998379999999999892999999999999857
No 51
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A
Probab=94.53 E-value=0.075 Score=30.82 Aligned_cols=50 Identities=12% Similarity=0.086 Sum_probs=42.6
Q ss_pred CCCCHHHHHHHHHHHCCC----CHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 449989999999998799----9789999949-----9988999999999998079978
Q gi|254780693|r 172 RNLTERETSCLQLAGDGY----TSEEIAEKLG-----LSVHTVNAYLGSATVKLDAVNR 221 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~G~----t~~eIA~~L~-----iS~~TV~~hl~~i~~KLg~~nR 221 (235)
..||++|.++|..+++-. |-++|...+. .+.+|++.|+.++++||+....
T Consensus 30 i~Lt~~E~~lL~~L~~~~g~vvsr~~l~~~vw~~~~~~~~~~l~~~I~rLRkkl~~~~~ 88 (106)
T 1gxq_A 30 LEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGH 88 (106)
T ss_dssp CCCCHHHHHHHHHHHHSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHGGGTG
T ss_pred EECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 87599999999999867676776999999873877689987799999999998512599
No 52
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, symmetric dimer, signaling protein; NMR {Helicobacter pylori J99}
Probab=94.50 E-value=0.017 Score=35.43 Aligned_cols=47 Identities=9% Similarity=0.174 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHCCC----CHHHHHHHH-----CCCHHHHHHHHHHHHHHCCCC
Q ss_conf 49989999999998799----978999994-----999889999999999980799
Q gi|254780693|r 173 NLTERETSCLQLAGDGY----TSEEIAEKL-----GLSVHTVNAYLGSATVKLDAV 219 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G~----t~~eIA~~L-----~iS~~TV~~hl~~i~~KLg~~ 219 (235)
.||++|.++|.++++-. |..+|...+ ..+.+||+.|+.++++||+..
T Consensus 143 ~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~tld~~I~rLRkKL~~~ 198 (223)
T 2hqr_A 143 EVKGKPFEVLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDKP 198 (223)
T ss_dssp CCCSTTTHHHHHHHHTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHTT
T ss_pred ECCCCHHHHHHHHHHCCCEEEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 05860678899998789927829999888418877888677999999999985276
No 53
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=94.45 E-value=0.06 Score=31.48 Aligned_cols=50 Identities=16% Similarity=0.081 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHCCC----CHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCCC
Q ss_conf 4449989999999998799----9789999949-----998899999999999807997
Q gi|254780693|r 171 ARNLTERETSCLQLAGDGY----TSEEIAEKLG-----LSVHTVNAYLGSATVKLDAVN 220 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a~G~----t~~eIA~~L~-----iS~~TV~~hl~~i~~KLg~~n 220 (235)
.-.||++|.++|..+++-. |-++|...+. .+.++|+.|+.++++||+..+
T Consensus 26 ~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~~~ 84 (112)
T 2jzy_A 26 KIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKIDDDF 84 (112)
T ss_dssp ECCCCHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTTTTTTS
T ss_pred EEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf 98659999999999984889874399999861488756541129999999999856758
No 54
>2e1c_A Putative HTH-type transcriptional regulator PH1519; DNA-binding; HET: DNA; 2.10A {Pyrococcus horikoshii OT3} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=94.43 E-value=0.084 Score=30.46 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4998999999999879--997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGDG--YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.|.+-.+++|..+.+. .|..+||..+|+|+.||...++++..+
T Consensus 24 ~LD~~D~~IL~~L~~d~R~s~~~iA~~lglS~~tV~~Ri~rL~~~ 68 (171)
T 2e1c_A 24 PLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES 68 (171)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 865999999999998389999999999891999999999999847
No 55
>2ia0_A Putative HTH-type transcriptional regulator PF0864; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=94.40 E-value=0.093 Score=30.16 Aligned_cols=44 Identities=18% Similarity=0.230 Sum_probs=36.0
Q ss_pred CCCCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 44998999999999879--997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAGDG--YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
-.|.+-.+++|+.+.+. .|..+||+.+|+|+.||...++++.+.
T Consensus 13 i~LD~~D~~IL~~Lq~d~R~s~~eIA~~lgls~~tv~~Ri~rLe~~ 58 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQER 58 (171)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 7749999999999998489999999999890999999999999978
No 56
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=94.23 E-value=0.097 Score=30.02 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 899999999987--9997899999499988999999999998
Q gi|254780693|r 176 ERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 176 ~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+-.+++|..+.+ ..|..|||..+|+|+.||..+++++.++
T Consensus 3 ~~D~~Il~~L~~d~R~s~~eia~~lg~s~~tv~~Ri~~L~~~ 44 (150)
T 2pn6_A 3 EIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKD 44 (150)
T ss_dssp HHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 899999999998489999999999893999999999999968
No 57
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA binding protein; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: a.4.5.39
Probab=94.22 E-value=0.11 Score=29.72 Aligned_cols=45 Identities=24% Similarity=0.200 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHC-C--CCHHHHHHHH----CCCHHHHHHHHHHHHHH
Q ss_conf 44499899999999987-9--9978999994----99988999999999998
Q gi|254780693|r 171 ARNLTERETSCLQLAGD-G--YTSEEIAEKL----GLSVHTVNAYLGSATVK 215 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a~-G--~t~~eIA~~L----~iS~~TV~~hl~~i~~K 215 (235)
...||+.|.+|++.+=+ | .|.+||...| +++..||.+.++++.+|
T Consensus 4 ~~~L~~~E~~IM~ilW~~~~~~t~~eI~~~l~~~~~~~~sTV~t~L~rL~~K 55 (138)
T 2g9w_A 4 LTRLGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKK 55 (138)
T ss_dssp GGGCCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
T ss_conf 6878899999999998489992799999987104799487999999999977
No 58
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA- binding domain, transcription; 1.90A {Enterococcus faecalis V583}
Probab=94.20 E-value=0.1 Score=29.87 Aligned_cols=48 Identities=23% Similarity=0.197 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHCC----CCHHHHHHHH-----CCCHHHHHHHHHHHHHHCCCC
Q ss_conf 44998999999999879----9978999994-----999889999999999980799
Q gi|254780693|r 172 RNLTERETSCLQLAGDG----YTSEEIAEKL-----GLSVHTVNAYLGSATVKLDAV 219 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~G----~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLg~~ 219 (235)
..||++|.++|.++++- .|-++|...+ ..+.++++.|+.++++||+-.
T Consensus 42 i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vWg~~~~~~~~sl~~~I~rLRkKl~~~ 98 (121)
T 2hwv_A 42 IELTHREFELLYYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDS 98 (121)
T ss_dssp EECCHHHHHHHHHHHHTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHCSS
T ss_pred EECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHC
T ss_conf 876999999999998788998899999999719876678507856999999987616
No 59
>2dbb_A Putative HTH-type transcriptional regulator PH0061; ASNC family, helix-turn-helix (HTH) domain, structural genomics, NPPSFA; 2.00A {Pyrococcus horikoshii OT3}
Probab=94.12 E-value=0.12 Score=29.37 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4998999999999879--997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGDG--YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.|++..+.+|+.+.+. .|..+||..+|+|+.||..+++++...
T Consensus 6 ~LD~~D~~Il~~L~~d~R~s~~eia~~lgls~~tv~~Ri~~L~~~ 50 (151)
T 2dbb_A 6 KLDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKL 50 (151)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 761999999999988599999999999896999999999999967
No 60
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis H37RV}
Probab=94.09 E-value=0.085 Score=30.44 Aligned_cols=49 Identities=18% Similarity=0.189 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCCC
Q ss_conf 44998999999999879----99789999949-----998899999999999807997
Q gi|254780693|r 172 RNLTERETSCLQLAGDG----YTSEEIAEKLG-----LSVHTVNAYLGSATVKLDAVN 220 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~G----~t~~eIA~~L~-----iS~~TV~~hl~~i~~KLg~~n 220 (235)
..||++|.++|.+++.- .|-++|...+. .+.++|+.|+.++++||+..+
T Consensus 33 i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~~~~ 90 (110)
T 2pmu_A 33 VSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDTGE 90 (110)
T ss_dssp ECCCHHHHHHHHHHHHTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHCCSS
T ss_pred EECCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 7568999999999997799765799998512577778884889999999999737799
No 61
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=93.93 E-value=0.11 Score=29.60 Aligned_cols=42 Identities=29% Similarity=0.359 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 998999999999879--997899999499988999999999998
Q gi|254780693|r 174 LTERETSCLQLAGDG--YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 174 LT~RE~evL~l~a~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
|.+..+++|..+.+. .|..+||.++|+|+.||...++++.++
T Consensus 2 lD~~D~~Il~~L~~d~r~s~~~ia~~~gls~~tv~~Ri~rL~~~ 45 (141)
T 1i1g_A 2 IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEK 45 (141)
T ss_dssp CCSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCC
T ss_conf 87799999999998489899999999892999999999997339
No 62
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH motif, PSI, protein structure initiative; 1.55A {Archaeoglobus fulgidus dsm 4304} SCOP: a.4.5.50
Probab=93.80 E-value=0.12 Score=29.31 Aligned_cols=43 Identities=23% Similarity=0.256 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 499899999999987--9997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+||+.|..|+..+.. +.|..+||..++++..||...++++.+|
T Consensus 17 glt~~e~~v~~~L~~~~~~t~~eia~~~~~~~~~v~~~l~~L~~~ 61 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKR 61 (109)
T ss_dssp CCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf 999999999999980488879999999756701899999999959
No 63
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=93.78 E-value=0.13 Score=29.15 Aligned_cols=45 Identities=29% Similarity=0.329 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHH------HCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 444998999999999------879997899999499988999999999998
Q gi|254780693|r 171 ARNLTERETSCLQLA------GDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 171 ~~~LT~RE~evL~l~------a~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
...||.+|.+.|.-+ -.+-+..+||..|+||+.||...++++.++
T Consensus 8 m~~ls~~ee~YL~aI~~l~~~~~~v~~~~iA~~L~vs~~svt~~l~~L~~~ 58 (139)
T 2x4h_A 8 MSNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEK 58 (139)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHC
T ss_conf 303788999999999999975998669999999688907999999999988
No 64
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=93.71 E-value=0.11 Score=29.64 Aligned_cols=42 Identities=14% Similarity=0.060 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 899999999987999789999949998899999999999807
Q gi|254780693|r 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 176 ~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
+|+.+++.-+++=.|-..-|+.|++|..+|-.+++++-+.||
T Consensus 22 ~r~l~~~~av~~~gS~t~AA~~L~iSq~avS~~I~~LE~~lG 63 (265)
T 1b9m_A 22 PRRISLLKHIALSGSISQGAKDAGISYKSAWDAINEMNQLSE 63 (265)
T ss_dssp HHHHHHHHHHHHHSSHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 799999999999799999999979899999999999987629
No 65
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DNA-binding, phosphoprotein, transcription regulation; NMR {Helicobacter pylori J99}
Probab=93.66 E-value=0.097 Score=30.03 Aligned_cols=48 Identities=23% Similarity=0.271 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHCC----CCHHHHHHHH-----CCCHHHHHHHHHHHHHHCCCC
Q ss_conf 44998999999999879----9978999994-----999889999999999980799
Q gi|254780693|r 172 RNLTERETSCLQLAGDG----YTSEEIAEKL-----GLSVHTVNAYLGSATVKLDAV 219 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~G----~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLg~~ 219 (235)
-.||++|.++|.+++.- .|-++|...+ ..+.+||+.|+.++++||+..
T Consensus 40 i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkl~~~ 96 (115)
T 2k4j_A 40 LDLTRAEYEILSLLISKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEKN 96 (115)
T ss_dssp ECSCHHHHHHHHHHHHHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHHS
T ss_pred EECCHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 727999999999998579937869999999716786778320999999999985315
No 66
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=93.52 E-value=0.098 Score=30.00 Aligned_cols=38 Identities=16% Similarity=0.339 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 4499899999999987999789999949998899999999
Q gi|254780693|r 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
..+.+ .+|.++...|+|-.+||..||||..||..+++.
T Consensus 144 ~~~~~--~~i~~l~~~g~s~~~Ia~~l~vs~sTv~R~l~~ 181 (183)
T 1gdt_A 144 RKIDR--DAVLNMWQQGLGASHISKTMNIARSTVYKVINE 181 (183)
T ss_dssp CCSCH--HHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred CCCCH--HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 98899--999999986999999999989399999999873
No 67
>2nyx_A Probable transcriptional regulatory protein, RV1404; alpha/beta, structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium tuberculosis H37RV}
Probab=93.42 E-value=0.35 Score=26.01 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=39.4
Q ss_pred CCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 449989999999998--79997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAG--DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||.-|..||..+. .|.+..+||..++|+..||...++++.+|
T Consensus 41 ~~LT~~q~~vL~~l~~~~~~~~~eLa~~l~i~~~~vs~~l~~Le~~ 86 (168)
T 2nyx_A 41 ENITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGA 86 (168)
T ss_dssp SSCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 9989999999999996799699999999896988999999998164
No 68
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, protein structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=93.34 E-value=0.08 Score=30.60 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=31.1
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9999999879997899999499988999999999998079
Q gi|254780693|r 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 179 ~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~ 218 (235)
.+|++++.+|+|-.+|+..+|+|..||.. +.+.. +-|.
T Consensus 49 ~~va~lL~~g~syreIa~~~gvS~aTIsR-v~r~L-~~g~ 86 (107)
T 3frw_A 49 FEVAKMLTDKRTYLDISEKTGASTATISR-VNRSL-NYGN 86 (107)
T ss_dssp HHHHHHHHTTCCHHHHHHHHCCCHHHHHH-HHHHH-HHSC
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHH-HHHHH-HCCC
T ss_conf 99999988699999999996987475899-99998-8389
No 69
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=93.29 E-value=0.093 Score=30.14 Aligned_cols=31 Identities=45% Similarity=0.629 Sum_probs=27.5
Q ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999987999789999949998899999999
Q gi|254780693|r 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 181 vL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
+-.|.+.|+|..+||..||+|.+-|+.|+.+
T Consensus 24 ~hELa~~gysvqqIa~~LGVsvrKv~~YLEs 54 (55)
T 2x48_A 24 AHELAKMGYTVQQIANALGVSERKVRRYLES 54 (55)
T ss_dssp HHHHHHTTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred HHHHHHCCCCHHHHHHHHCHHHHHHHHHHHC
T ss_conf 9999984872999998846119999998745
No 70
>3cuo_A Uncharacterized HTH-type transcriptional regulator YGAV; DNA-binding transcriptional regulator, structural genomics, PSI, MCSG; 2.00A {Escherichia coli K12}
Probab=93.18 E-value=0.12 Score=29.29 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 8999999999879--99789999949998899999999999
Q gi|254780693|r 176 ERETSCLQLAGDG--YTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 176 ~RE~evL~l~a~G--~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
|-=.+||.++++| ++..||+..||+|..||-.|++...+
T Consensus 24 p~Rl~Il~~L~~~~~~~v~eLa~~l~~s~stvS~HL~~L~~ 64 (99)
T 3cuo_A 24 PKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRD 64 (99)
T ss_dssp HHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999985899907999774558598799999999998
No 71
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=93.18 E-value=0.19 Score=27.86 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 499899999999987--99978999994999889999999999
Q gi|254780693|r 173 NLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSAT 213 (235)
Q Consensus 173 ~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~ 213 (235)
.|.+-.+++|..+.+ -.|..+||..+|+|+.||...++++.
T Consensus 4 ~lD~~D~~Il~~L~~n~R~s~~~ia~~~gls~~tv~~Ri~rL~ 46 (150)
T 2w25_A 4 ALDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLE 46 (150)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 5709999999999983899999999998929899999999998
No 72
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=93.13 E-value=0.097 Score=30.02 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=22.0
Q ss_pred HCCCHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHCCCC
Q ss_conf 49998899999999999807---99789999999976999
Q gi|254780693|r 198 LGLSVHTVNAYLGSATVKLD---AVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 198 L~iS~~TV~~hl~~i~~KLg---~~nR~qava~A~~~Gli 234 (235)
++++... ++++..+.+ =.++++|+.-|++-|||
T Consensus 265 i~i~l~~----lr~i~~~I~vA~G~~K~~AI~aAL~gg~i 300 (315)
T 2w48_A 265 LSIEMAK----LRQARYSIGIAMGEEKYSGILGALHGRYI 300 (315)
T ss_dssp CBCCHHH----HHTSSEEEEECCCGGGHHHHHHHHHTTSC
T ss_pred ECCCHHH----HCCCCCEEEEECCCHHHHHHHHHHHCCCC
T ss_conf 2378799----72689789996684559999999836999
No 73
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=93.10 E-value=0.21 Score=27.65 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99899999999987--9997899999499988999999999998
Q gi|254780693|r 174 LTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 174 LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
|.+-.+++|..+.+ -.|..|||+.+|+|+.||..+++++.++
T Consensus 3 lD~~D~~Il~~L~~n~R~s~~eiA~~~g~s~~tv~~Ri~rL~~~ 46 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESF 46 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 68899999999998389999999999892989999999999858
No 74
>2cyy_A Putative HTH-type transcriptional regulator PH1519; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=93.02 E-value=0.3 Score=26.52 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 49989999999998--79997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAG--DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.|.+-.+++|..+. --.|..+||..+|+|+.||...++++..+
T Consensus 4 ~lD~~D~~IL~~L~~d~R~s~~~iA~~lglS~~tv~~Ri~rL~~~ 48 (151)
T 2cyy_A 4 PLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRES 48 (151)
T ss_dssp CCCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 772899999999998489999999999891999999999999845
No 75
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=92.99 E-value=0.2 Score=27.81 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHH--HCCCCHHHHHHHH----CCCHHHHHHHHHHHHHHC
Q ss_conf 44998999999999--8799978999994----999889999999999980
Q gi|254780693|r 172 RNLTERETSCLQLA--GDGYTSEEIAEKL----GLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 172 ~~LT~RE~evL~l~--a~G~t~~eIA~~L----~iS~~TV~~hl~~i~~KL 216 (235)
..||+.|.+|+..+ ..+.|.+||+..| +++..||..-++++.+|=
T Consensus 6 ~~lt~~E~~VM~~LW~~~~~t~~ei~~~l~~~~~~~~~Tv~t~L~RL~~KG 56 (123)
T 1okr_A 6 YEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKG 56 (123)
T ss_dssp CCCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 998999999999998379979999999975123875424999999999889
No 76
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=92.98 E-value=0.15 Score=28.72 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHC--CC--CHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCC
Q ss_conf 4499899999999987--99--9789999949-----99889999999999980799
Q gi|254780693|r 172 RNLTERETSCLQLAGD--GY--TSEEIAEKLG-----LSVHTVNAYLGSATVKLDAV 219 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~--G~--t~~eIA~~L~-----iS~~TV~~hl~~i~~KLg~~ 219 (235)
..||++|.++|.++++ |. |-++|...+. .+.+|++.|+.++++||+..
T Consensus 35 i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~~~ 91 (120)
T 2z9m_A 35 IELTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDD 91 (120)
T ss_dssp ECCCHHHHHHHHHHHTTTTCCEEHHHHHHHHHCTTCCSCTHHHHHHHHHHHHHHCSS
T ss_pred EECCHHHHHHHHHHHHCCCCEEEHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHC
T ss_conf 976999999999999789963756896665037777898877035899999997507
No 77
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genomics, protein structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=92.96 E-value=0.22 Score=27.42 Aligned_cols=15 Identities=13% Similarity=0.137 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 599999999999998
Q gi|254780693|r 13 SLQELSPRLHLIQNR 27 (235)
Q Consensus 13 sl~dl~~~l~~l~~~ 27 (235)
|-..+..|+..+.+.
T Consensus 30 S~~tv~~Ri~rL~~~ 44 (162)
T 3i4p_A 30 STTPCWRRIQKMEED 44 (162)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 999999999999847
No 78
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=92.87 E-value=0.098 Score=29.99 Aligned_cols=49 Identities=8% Similarity=0.040 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHCCC----CHHHHHHHHC-----CCHHHHHHHHHHHHHHCCCCC
Q ss_conf 449989999999998799----9789999949-----998899999999999807997
Q gi|254780693|r 172 RNLTERETSCLQLAGDGY----TSEEIAEKLG-----LSVHTVNAYLGSATVKLDAVN 220 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~G~----t~~eIA~~L~-----iS~~TV~~hl~~i~~KLg~~n 220 (235)
..||++|.++|.++++-. |-.+|...+. .+.+||+.|+.++++||+-..
T Consensus 30 i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~~i~~~I~rLRkkl~~~~ 87 (110)
T 1opc_A 30 MPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDP 87 (110)
T ss_dssp ECCCHHHHHHHHHHHHSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHCSCT
T ss_pred EECCHHHHHHHHHHHHCCCEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9759999999999986477764199998784386557674789999999999875368
No 79
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=92.85 E-value=0.21 Score=27.65 Aligned_cols=35 Identities=9% Similarity=0.192 Sum_probs=15.9
Q ss_pred HCCHHHHCCHHHHH-HHHHHHHHHHCCCCEEEEEEC
Q ss_conf 21198622599999-999999998583785899841
Q gi|254780693|r 5 TLTGKKSSSLQELS-PRLHLIQNRIKARNFALYTIN 39 (235)
Q Consensus 5 ~~~~~~~~sl~dl~-~~l~~l~~~~~~~~f~~~~~~ 39 (235)
.+||++.+..-.+. ..++..-+.+...||.+.+..
T Consensus 19 ~~SGe~la~~L~iSR~aVwk~i~~L~~~G~~I~s~~ 54 (321)
T 1bia_A 19 FHSGEQLGETLGMSRAAINKHIQTLRDWGVDVFTVP 54 (321)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCCEEET
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 597999999879799999999999997797299978
No 80
>2v79_A DNA replication protein DNAD; primosome, DNA remodelling, oligomerization domain, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=92.83 E-value=0.08 Score=30.62 Aligned_cols=43 Identities=26% Similarity=0.215 Sum_probs=35.9
Q ss_pred CCCHHHHHHHHHHHC----C---CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 499899999999987----9---997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGD----G---YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~----G---~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+||+.|.-|+-.+.. | -|...||..+|+|++||..++++...|
T Consensus 29 gLs~~e~~vll~l~~~~~~g~~fPS~~~La~~~g~s~~~v~~~l~~L~~k 78 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99989999999999988769979899999989594999999999999988
No 81
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structural genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=92.79 E-value=0.3 Score=26.53 Aligned_cols=19 Identities=11% Similarity=0.059 Sum_probs=12.8
Q ss_pred CCCHHHHHHHHHHHCCCCH
Q ss_conf 4998999999999879997
Q gi|254780693|r 173 NLTERETSCLQLAGDGYTS 191 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G~t~ 191 (235)
.+++..+.++.++.+=..+
T Consensus 277 ~~~~~~~~f~d~l~e~l~~ 295 (306)
T 3hhg_A 277 AVNLRLRVFLDFLVEELGN 295 (306)
T ss_dssp GGCHHHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHHCC
T ss_conf 7899999999999998571
No 82
>1qbj_A Protein (double-stranded RNA specific adenosine deaminase (ADAR1)); protein/Z-DNA complex, hydrolase/DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A
Probab=92.79 E-value=0.18 Score=28.11 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=36.2
Q ss_pred HHHHHHHHHHH---CC--CCHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 89999999998---79--9978999994999889999999999980799
Q gi|254780693|r 176 ERETSCLQLAG---DG--YTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 (235)
Q Consensus 176 ~RE~evL~l~a---~G--~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~ 219 (235)
+.|..||..+. +| .|..+||..|+++.++||.++-++.++-.|.
T Consensus 10 d~e~~Il~~L~~~g~g~~~tA~~LAk~lg~~Kk~vN~~LY~L~k~g~v~ 58 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 58 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
T ss_conf 7999999999973799752199999996988889899999999879864
No 83
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=92.75 E-value=0.23 Score=27.36 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=32.2
Q ss_pred HHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999879-99789999949998899999999999
Q gi|254780693|r 178 ETSCLQLAGDG-YTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 178 E~evL~l~a~G-~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
=.+++.++++| ++..||+..+|+|..||-.|++...+
T Consensus 48 Rl~Il~~L~~~~~~v~ela~~l~~s~stvS~HL~~L~~ 85 (122)
T 1r1t_A 48 RLRLLSLLARSELCVGDLAQAIGVSESAVSHQLRSLRN 85 (122)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999829976999999989198889999999998
No 84
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=92.62 E-value=0.097 Score=30.03 Aligned_cols=43 Identities=26% Similarity=0.241 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHHHHC----CC---CHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 499899999999987----99---97899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGD----GY---TSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~----G~---t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+||+.|.-|+-.+.. |. |.+.||..+|+|++||..++++...|
T Consensus 29 gLs~~e~~vll~l~~~~~~~~~~PS~~~La~~~g~s~~~v~~~l~~L~~~ 78 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQK 78 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 98999999999999998759999999999989594999999999999988
No 85
>1jhg_A Trp operon repressor; complex (regulatory protein/peptide), DNA-binding regulatory protein; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 1trr_A* 1tro_A*
Probab=92.54 E-value=0.14 Score=28.85 Aligned_cols=36 Identities=22% Similarity=0.294 Sum_probs=30.4
Q ss_pred CCCHHHH-------HHHHHHHCC-CCHHHHHHHHCCCHHHHHHH
Q ss_conf 4998999-------999999879-99789999949998899999
Q gi|254780693|r 173 NLTERET-------SCLQLAGDG-YTSEEIAEKLGLSVHTVNAY 208 (235)
Q Consensus 173 ~LT~RE~-------evL~l~a~G-~t~~eIA~~L~iS~~TV~~h 208 (235)
-|||.|+ +|++++.+| +|-.+|+..+|+|..||-.=
T Consensus 35 LlT~~E~~~la~R~~ia~~L~~g~~s~reI~~~~gvS~aTItR~ 78 (101)
T 1jhg_A 35 MLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG 78 (101)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 19999999999999999999908957999999969865777898
No 86
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=92.54 E-value=0.1 Score=29.92 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=29.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 99999998799978999994999889999999999
Q gi|254780693|r 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 (235)
Q Consensus 179 ~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~ 213 (235)
.+|++++.+|+|-.+|+..+|+|..||.. +.+..
T Consensus 66 ~~Va~lL~~g~syreIa~~tgvS~aTIsR-V~r~L 99 (119)
T 3kor_A 66 LQVAKMIKQGYTYATIEQESGASTATISR-VKRSL 99 (119)
T ss_dssp HHHHHHHHHTCCHHHHHHHHCCCHHHHHH-HHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHH-HHHHH
T ss_conf 99999988599999999996987454799-99998
No 87
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=92.45 E-value=0.29 Score=26.59 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=20.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999999987999789999949998899999999999
Q gi|254780693|r 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 177 RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
|++ |+.+..+|.+..+||..++||..||..-+++-.+
T Consensus 38 R~r-IV~~~~~G~s~r~IArrf~VS~stV~kii~r~re 74 (149)
T 1k78_A 38 RQR-IVELAHQGVRPCDISRQLRVSHGCVSKILGRYYE 74 (149)
T ss_dssp HHH-HHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999-9999996999999999889499999999999998
No 88
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=92.35 E-value=0.3 Score=26.54 Aligned_cols=38 Identities=32% Similarity=0.371 Sum_probs=33.0
Q ss_pred CCCHHHH--HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 4998999--9999998799978999994999889999999
Q gi|254780693|r 173 NLTERET--SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 173 ~LT~RE~--evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~ 210 (235)
.|||-|. -+.++...|.|.++||..+|+|+.+|+.+++
T Consensus 117 ~lsp~e~a~~~~~l~~~g~t~~~iA~~lg~s~~~V~~~l~ 156 (230)
T 1vz0_A 117 DLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 8988999999999988418999999880999999999998
No 89
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=92.19 E-value=0.24 Score=27.26 Aligned_cols=36 Identities=19% Similarity=0.165 Sum_probs=30.5
Q ss_pred HHHHHHHHCCC-CHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999998799-9789999949998899999999999
Q gi|254780693|r 179 TSCLQLAGDGY-TSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 179 ~evL~l~a~G~-t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
.+|+.++++|- +..||+..||+|..||-.|++....
T Consensus 29 l~Il~~L~~~~~~v~el~~~l~~s~s~vS~HL~~L~~ 65 (106)
T 1r1u_A 29 IRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKS 65 (106)
T ss_dssp HHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999829967999999876586589999999998
No 90
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=92.10 E-value=0.24 Score=27.18 Aligned_cols=43 Identities=21% Similarity=0.351 Sum_probs=36.7
Q ss_pred CCCHHH-HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 499899-9999999879997899999499988999999999998
Q gi|254780693|r 173 NLTERE-TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE-~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+|+-+ .++++++-.|++..+||.++||++.|+..-+++.-+.
T Consensus 22 ~~t~e~K~~iv~~~e~G~s~~~vAre~gi~~stl~~W~k~~~~~ 65 (87)
T 2elh_A 22 SLTPRDKIHAIQRIHDGESKASVARDIGVPESTLRGWCKNEDKL 65 (87)
T ss_dssp SCCHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 18999999999999879999999999797998999999999998
No 91
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=92.02 E-value=0.27 Score=26.81 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHH---CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 49989999999998---79997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAG---DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a---~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+||+-+.+|+.++. ++.|..|||..+|+|..||...++.+.++
T Consensus 23 Gl~~~~~~il~~L~~~~~p~t~~eLa~~l~is~s~vs~~l~~L~~~ 68 (152)
T 1ku9_A 23 GLNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEEL 68 (152)
T ss_dssp TCCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 9899999999999976989299999999896885799999999988
No 92
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=91.83 E-value=0.31 Score=26.43 Aligned_cols=44 Identities=18% Similarity=0.174 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4499899999999987--9997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||+.|..||..+.. |.|..+||..++++..||...++++.+|
T Consensus 33 ~glt~~q~~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~L~~~ 78 (155)
T 1s3j_A 33 QGVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQK 78 (155)
T ss_dssp TTCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 5989999999999998699799999999896998999999999862
No 93
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, structural genomics, PSI-2; 2.01A {Silicibacter pomeroyi dss-3}
Probab=91.73 E-value=0.31 Score=26.42 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 499899999999987--9997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+||+.|..||..+.+ |.|..++|..++++..||...++++-+|
T Consensus 37 glt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~~is~~l~~L~~~ 81 (152)
T 3bj6_A 37 GVTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRA 81 (152)
T ss_dssp TCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 979999999999998799899999999896987999999999988
No 94
>2oqg_A Possible transcriptional regulator, ARSR family protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=91.69 E-value=0.31 Score=26.45 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 899999999987-999789999949998899999999999
Q gi|254780693|r 176 ERETSCLQLAGD-GYTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 176 ~RE~evL~l~a~-G~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
|-=.+||.++++ +++..||+..|++|..||..|++....
T Consensus 21 p~Rl~Il~~L~~~~~~v~eLa~~l~is~s~vS~HL~~L~~ 60 (114)
T 2oqg_A 21 ETRWEILTELGRADQSASSLATRLPVSRQAIAKHLNALQA 60 (114)
T ss_dssp HHHHHHHHHHHHSCBCHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999819928999998888898899999999998
No 95
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=91.62 E-value=0.58 Score=24.49 Aligned_cols=43 Identities=23% Similarity=0.218 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHC----CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 499899999999987----9997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGD----GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~----G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.||..|..||..+.. |.|..+||..++++..||..-++++-+|
T Consensus 38 ~Lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~i~~stvs~~v~~Le~~ 84 (189)
T 3nqo_A 38 ILTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKN 84 (189)
T ss_dssp SSCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999999999998478999099999999896886999999999987
No 96
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=91.56 E-value=0.2 Score=27.73 Aligned_cols=43 Identities=14% Similarity=0.164 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHC--CCCHHHHHHHHCC--CHHHHHHHHHHHHHH
Q ss_conf 499899999999987--9997899999499--988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGD--GYTSEEIAEKLGL--SVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~--G~t~~eIA~~L~i--S~~TV~~hl~~i~~K 215 (235)
=.++....||..+.+ ..|.++||..+|| |+.+|..|++....+
T Consensus 10 WM~~~D~rILE~L~e~g~~t~~eIA~~lgi~~S~~~Vs~rl~~L~~~ 56 (111)
T 3b73_A 10 WMTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADH 56 (111)
T ss_dssp TCCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 24601999999999849999999999868884799999999999878
No 97
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix DNA binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=91.51 E-value=0.67 Score=24.06 Aligned_cols=44 Identities=18% Similarity=0.148 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 449989999999998--79997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAG--DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||+-|..||..+. .|.|..+||..++++..||...++++-+|
T Consensus 38 ~~lt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~ 83 (150)
T 2rdp_A 38 YPITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERN 83 (150)
T ss_dssp SSSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 7979999999999997799599999999896887899999999718
No 98
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=91.46 E-value=0.2 Score=27.75 Aligned_cols=21 Identities=10% Similarity=0.205 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHHHHCCCCE
Q ss_conf 599999999999998583785
Q gi|254780693|r 13 SLQELSPRLHLIQNRIKARNF 33 (235)
Q Consensus 13 sl~dl~~~l~~l~~~~~~~~f 33 (235)
|-..+..++..+.+.++..-|
T Consensus 33 sq~avS~~I~~LE~~lg~~Lf 53 (303)
T 3isp_A 33 TPSAVSQRIKSLEQQVGQVLV 53 (303)
T ss_dssp CHHHHHHHHHHHHHHHTSCCE
T ss_pred CHHHHHHHHHHHHHHHCCEEE
T ss_conf 989999999999998398029
No 99
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=91.32 E-value=0.46 Score=25.21 Aligned_cols=43 Identities=9% Similarity=0.180 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 499899999999987--9997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+||+.|..||..+.. |.|..+||..|+|+..||...++++-+|
T Consensus 46 glt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~ 90 (162)
T 2fa5_A 46 GMAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLER 90 (162)
T ss_dssp CCCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 979999999999986799899999999787871599999999857
No 100
>3boq_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=91.18 E-value=0.68 Score=23.97 Aligned_cols=44 Identities=9% Similarity=0.146 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHC---CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4499899999999987---9997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAGD---GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~---G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||+.|..||..+.+ |.|..+||..++|+..||...++++-+|
T Consensus 43 ~glt~~q~~vL~~L~~~~~~~t~~~La~~~~v~~~~vs~~i~~Le~~ 89 (160)
T 3boq_A 43 TGLSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLIKD 89 (160)
T ss_dssp HSCCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 19299999999999868999989999999896885899999999867
No 101
>2eth_A Transcriptional regulator, putative, MAR family; TM0816, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=91.02 E-value=0.36 Score=25.93 Aligned_cols=45 Identities=18% Similarity=0.133 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 44499899999999987--9997899999499988999999999998
Q gi|254780693|r 171 ARNLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
...||.-|..||..++. +.|..+||..+++|..||..-++++-+|
T Consensus 39 ~~~ls~~q~~vL~~l~~~~~~t~~eLa~~l~i~~~tvs~~i~~L~~~ 85 (154)
T 2eth_A 39 ISDMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKR 85 (154)
T ss_dssp HHHSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 36999999999999998699499999999897988999999999988
No 102
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR), structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=90.90 E-value=0.33 Score=26.20 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 44499899999999987--9997899999499988999999999998
Q gi|254780693|r 171 ARNLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
..+||+.|..||..+.. |.|..+||..++++..||...++++-+|
T Consensus 36 ~~glt~~q~~vL~~L~~~~~~t~~~La~~l~~~~~tvs~~v~~L~~~ 82 (154)
T 2qww_A 36 SLGLTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISL 82 (154)
T ss_dssp HHTCCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 76989999999999997799899999999797875799999999978
No 103
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, DNA binding protein/DNA complex, transferase; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=90.85 E-value=0.38 Score=25.82 Aligned_cols=14 Identities=7% Similarity=0.081 Sum_probs=8.2
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 44998999999999
Q gi|254780693|r 172 RNLTERETSCLQLA 185 (235)
Q Consensus 172 ~~LT~RE~evL~l~ 185 (235)
+.|.|=|..+=.++
T Consensus 278 PdLNPIE~~~W~~l 291 (345)
T 3hot_A 278 PDLAPSDYHLFASM 291 (345)
T ss_dssp GGGCHHHHTHHHHH
T ss_pred CCCCCHHHHHHHHH
T ss_conf 77674559999999
No 104
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=90.84 E-value=0.77 Score=23.61 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHH--CC-CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4449989999999998--79-997899999499988999999999998
Q gi|254780693|r 171 ARNLTERETSCLQLAG--DG-YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a--~G-~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
...||..|..||..+. .| .|..+||..++++..||...++++-+|
T Consensus 30 ~~~ls~~q~~vL~~i~~~~g~~t~~ela~~~~~~~~tvs~~l~~L~~~ 77 (147)
T 2hr3_A 30 ADPVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERG 77 (147)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 659899999999999976999899999999897987999999999867
No 105
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa}
Probab=90.80 E-value=0.77 Score=23.58 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 49989999999998--79997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAG--DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+||+.|..||..+. .|.|..|||..++++..||...++++-+|
T Consensus 35 glt~~q~~vL~~l~~~~~~t~~eLa~~~~~~~~~vs~~i~~L~~~ 79 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKR 79 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHC
T ss_conf 989999999999998799099999998785735299999999738
No 106
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=90.77 E-value=0.54 Score=24.68 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHH-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 449989999999998-----79997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAG-----DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a-----~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||+-|..||..+. .|.|..+||..+++|..||...++++.+|
T Consensus 65 ~GLt~~q~~vL~~L~~~~~~~~lt~~eLa~~l~~s~~~vs~~l~~Le~~ 113 (181)
T 2fbk_A 65 SGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLLEK 113 (181)
T ss_dssp TTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 6979999999999985099999099999999787875799999999987
No 107
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=90.48 E-value=0.82 Score=23.40 Aligned_cols=45 Identities=22% Similarity=0.096 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 44499899999999987--9997899999499988999999999998
Q gi|254780693|r 171 ARNLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
..+||+.|..+|..+.. |.|..+||..|+++..||...++++-+|
T Consensus 32 ~~glt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vs~~i~~L~~~ 78 (143)
T 3oop_A 32 SYDVTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRK 78 (143)
T ss_dssp TSSSCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 66999999999999986899799999999896997999999999756
No 108
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=90.44 E-value=0.63 Score=24.24 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=24.3
Q ss_pred CCHHH--HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99899--999999987999789999949998899999999
Q gi|254780693|r 174 LTERE--TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 174 LT~RE--~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
.+-|| ..+..+.-.|+|-++||..||+|..+|..+++=
T Consensus 8 ~~~~E~g~~~~~l~~~g~tQ~elAe~lg~Srs~Vsr~lrl 47 (192)
T 1zx4_A 8 HSIREIGLRLMRMKNDGMSQKDIAAKEGLSQAKVTRALQA 47 (192)
T ss_dssp SCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 8699999999999985999999999988799999999999
No 109
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genomics, transcription; 2.05A {Pyrococcus horikoshii OT3} SCOP: a.4.5.28
Probab=90.42 E-value=0.33 Score=26.19 Aligned_cols=41 Identities=7% Similarity=0.008 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 989999999998--79997899999499988999999999998
Q gi|254780693|r 175 TERETSCLQLAG--DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 175 T~RE~evL~l~a--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+|-+..||..+. .+.|..|||..++||..||..|++.+-++
T Consensus 15 ~p~r~~IL~~L~~~~~~t~~eLa~~l~is~~~vs~~l~~Le~~ 57 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERN 57 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 9999999999851899839999999891998999999999858
No 110
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis 89}
Probab=90.35 E-value=0.55 Score=24.67 Aligned_cols=43 Identities=16% Similarity=0.065 Sum_probs=38.2
Q ss_pred CCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 49989999999998--79997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAG--DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+||..|..||..+. .|.|..+||..++++..||...++++-+|
T Consensus 28 glt~~q~~vL~~l~~~~~~t~~~la~~l~i~~~tvs~~v~~L~~~ 72 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEES 72 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 969999999999987799899999999896986899999999858
No 111
>3onq_A Regulator of polyketide synthase expression; structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Bifidobacterium adolescentis}
Probab=90.34 E-value=0.59 Score=24.41 Aligned_cols=44 Identities=18% Similarity=0.066 Sum_probs=39.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99999999879997899999499988999999999998079978
Q gi|254780693|r 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 (235)
Q Consensus 178 E~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR 221 (235)
-..+-.|+..|.+.++.|+.|+|-+|||++-+++|-+.+|..=.
T Consensus 199 l~TL~ayl~~~~s~~~tA~~L~vHrNTlrYRL~Ri~eltG~dl~ 242 (262)
T 3onq_A 199 YLTVSTFLKYGSSLENTAKELNVHPNTVRYRLKRAAETTGWDAT 242 (262)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHHHHHHHSCCTT
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999849999999998497888999999999999780976
No 112
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=90.27 E-value=0.64 Score=24.17 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=29.7
Q ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 99999987999789999949998899999999999807
Q gi|254780693|r 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 180 evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.|+.+...|.+..+||..|+||..||..-+++-.+.=.
T Consensus 25 rIv~l~~~G~s~~~Iar~l~Vs~~~V~kil~r~~etG~ 62 (128)
T 1pdn_C 25 KIVEMAADGIRPCVISRQLRVSHGCVSKILNRYQETGS 62 (128)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99999986999999999889689999999999873598
No 113
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=90.20 E-value=0.48 Score=25.05 Aligned_cols=49 Identities=16% Similarity=-0.013 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 4499899999999987------9997899999499988999999999998079978999
Q gi|254780693|r 172 RNLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qa 224 (235)
..||+.|+.|++++-+ .+|..++|...++|+.||- +..+|||-.+=.+.
T Consensus 17 ~~Lt~~E~~Ia~yil~n~~~v~~~si~elA~~~~vS~aTI~----Rf~kklGf~gf~ef 71 (111)
T 2o3f_A 17 HXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVI----RLCXSLGLKGFQDL 71 (111)
T ss_dssp GGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHH----HHHHHTTCSSHHHH
T ss_pred CCCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHH----HHHHHHCCCCHHHH
T ss_conf 41799999999999959247643789999989798987999----99999277989999
No 114
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=90.14 E-value=0.2 Score=27.79 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 8999999999879-99789999949998899999999999
Q gi|254780693|r 176 ERETSCLQLAGDG-YTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 176 ~RE~evL~l~a~G-~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
|-=++||.++++| ++..|||..|++|..||..|++-+.+
T Consensus 58 PtRl~IL~~L~~g~~tv~eLa~~l~is~stvS~HL~~L~~ 97 (151)
T 3f6v_A 58 PTRRRLVQLLTSGEQTVNNLAAHFPASRSAISQHLRVLTE 97 (151)
T ss_dssp HHHHHHHHHGGGCCEEHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999809938999999989199999999998998
No 115
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=90.12 E-value=0.16 Score=28.48 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=21.3
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9999999998799978999994999889999999999
Q gi|254780693|r 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 (235)
Q Consensus 177 RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~ 213 (235)
|++ |+.+..+|.+..+||..|+||..||..-+++-+
T Consensus 31 R~r-Iv~l~~~G~s~r~IArrl~VS~stV~kil~R~r 66 (159)
T 2k27_A 31 RQR-IVDLAHQGVRPCDISRQLRVSHGCVSKILGRYY 66 (159)
T ss_dssp HHH-HHHHHHHTCCHHHHHHHHTCCSHHHHHHHCCSS
T ss_pred HHH-HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999-999998699999999988959999999999998
No 116
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structural genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=90.09 E-value=0.61 Score=24.35 Aligned_cols=44 Identities=11% Similarity=0.058 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4499899999999987--9997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||.-|..||..+.. |.|..|||..++++..||...++++-+|
T Consensus 39 ~gLt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~v~~L~~~ 84 (155)
T 3cdh_A 39 QGLRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDAR 84 (155)
T ss_dssp TTCCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 2969999999999985799699999999896998899999999968
No 117
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=90.08 E-value=0.57 Score=24.55 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 499899999999987-9997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGD-GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~-G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.||.-|..||..+++ |.|..+||..+++|..||..-++++-+|
T Consensus 34 ~lt~~q~~iL~~i~~~~~t~~~la~~~~~~~~tvs~~i~~L~~~ 77 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPRSMVYLANRYFVTQSAITAAVDKLEAK 77 (144)
T ss_dssp SCCHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999999999999199699999999897886899999999988
No 118
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=90.02 E-value=0.63 Score=24.20 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 44998999999999879-997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAGDG-YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~G-~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.++|+-|..||..+..| .|..+||..++++..||...++++-+|
T Consensus 33 ~~lt~~q~~vL~~i~~~~~t~~ela~~~~i~~~~vs~~i~~L~~~ 77 (146)
T 2gxg_A 33 LNLSYLDFLVLRATSDGPKTMAYLANRYFVTQSAITASVDKLEEM 77 (146)
T ss_dssp TTCCHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 697999999999998599199999999897986999999999868
No 119
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=89.90 E-value=0.91 Score=23.07 Aligned_cols=45 Identities=22% Similarity=0.187 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 44499899999999987--9997899999499988999999999998
Q gi|254780693|r 171 ARNLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
..+||+.|..||..+.. |.|..+||..++++..||...++++-+|
T Consensus 42 ~~gLt~~q~~vL~~l~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~ 88 (153)
T 2pex_A 42 ALDLTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAA 88 (153)
T ss_dssp TTTCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 76979999999999984799899999999896886899999999988
No 120
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, PSI, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=89.83 E-value=0.57 Score=24.56 Aligned_cols=45 Identities=20% Similarity=0.205 Sum_probs=37.6
Q ss_pred CCCCCHHHHHHHHHHH---CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4449989999999998---79997899999499988999999999998
Q gi|254780693|r 171 ARNLTERETSCLQLAG---DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a---~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
..+||+-|..||..+. .|.|..+|+..++++..||...++++-++
T Consensus 32 ~~glt~~q~~iL~~l~~~~~~~t~~eL~~~~~~~~~~vs~~i~~L~~~ 79 (146)
T 2fbh_A 32 HLGLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQ 79 (146)
T ss_dssp GGCCTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 859899999999999867999999999999896898999999999639
No 121
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=89.79 E-value=0.38 Score=25.77 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 899999999987-999789999949998899999999999
Q gi|254780693|r 176 ERETSCLQLAGD-GYTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 176 ~RE~evL~l~a~-G~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
|.=.+|+.++.+ +++..||+..||+|..||-.|++....
T Consensus 23 p~Rl~Il~~L~~~~~~v~ela~~l~~s~~tvS~HL~~L~~ 62 (98)
T 3jth_A 23 ERRLQILCMLHNQELSVGELCAKLQLSQSALSQHLAWLRR 62 (98)
T ss_dssp HHHHHHHHHTTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999729937999999988595678899999998
No 122
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural genomics, DNA-binding protein, PSI-2; 2.30A {Agrobacterium tumefaciens str}
Probab=89.69 E-value=0.58 Score=24.50 Aligned_cols=47 Identities=9% Similarity=0.089 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 44998999999999879997899999499988999999999998079
Q gi|254780693|r 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~ 218 (235)
..+.+...+++.-+++=.|-..-|..|+||..+|..+++.+=..||+
T Consensus 22 ~~~~~~~~~ll~aV~~~GSit~AA~~L~iSq~avs~~i~~LE~~lg~ 68 (135)
T 2ijl_A 22 ERLGHGKVELMQLIAETGSISAAGRAMDMSYRRAWLLVDALNHMFRQ 68 (135)
T ss_dssp EEESHHHHHHHHHHHHHSCHHHHHHHTTCCHHHHHHHHHHHHHHBSS
T ss_pred CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 65497899999999996999999999788988999999999998298
No 123
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=89.56 E-value=0.97 Score=22.89 Aligned_cols=44 Identities=16% Similarity=0.152 Sum_probs=39.0
Q ss_pred CCCCHHHHHHHHHHHC---CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4499899999999987---9997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAGD---GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~---G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||.-|..||..+.+ |.|..+||..++++..||...++++-+|
T Consensus 49 ~gLt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~stvsr~v~~L~~~ 95 (166)
T 3deu_A 49 LELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDK 95 (166)
T ss_dssp TTCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 69899999999999976989799999999798998999999999858
No 124
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, structural genomics; NMR {Mycobacterium tuberculosis H37RV}
Probab=89.51 E-value=0.46 Score=25.20 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 899999999987-999789999949998899999999999
Q gi|254780693|r 176 ERETSCLQLAGD-GYTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 176 ~RE~evL~l~a~-G~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
|--++|+.++++ ..+..+|+..||+|..||..|++.+..
T Consensus 21 ptRl~Il~~L~~~~~~v~ela~~lgis~stvS~HL~~L~~ 60 (118)
T 2jsc_A 21 PTRCRILVALLDGVCYPGQLAAHLGLTRSNVSNHLSCLRG 60 (118)
T ss_dssp HHHHHHHHHHHTTCCSTTTHHHHHSSCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999819928999999989299999999999998
No 125
>1u2w_A CADC repressor, cadmium efflux system accessory protein; zinc, LEAD, SOFT metal ION resistance, ARSR/SMTB family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=89.51 E-value=0.61 Score=24.31 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=31.4
Q ss_pred HHHHHHHHHHH-CC-CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 89999999998-79-99789999949998899999999999
Q gi|254780693|r 176 ERETSCLQLAG-DG-YTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 176 ~RE~evL~l~a-~G-~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
|.=.++|..++ .| .+..||+..|++|..||-.|++....
T Consensus 42 p~Rl~Il~~L~~~~~~~v~ela~~l~~s~s~vS~HL~~L~~ 82 (122)
T 1u2w_A 42 ENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLYK 82 (122)
T ss_dssp HHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999998788927999999988873269999999998
No 126
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=89.34 E-value=0.39 Score=25.67 Aligned_cols=38 Identities=24% Similarity=0.237 Sum_probs=32.3
Q ss_pred CCCHHHH--HHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 4998999--9999998799978999994999889999999
Q gi|254780693|r 173 NLTERET--SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 173 ~LT~RE~--evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~ 210 (235)
.|||-|. -+-+++..|+|-++||..||.|..+|..|++
T Consensus 35 ~l~~~e~A~~~~~l~~~g~t~~~iA~~lg~s~~~V~~~l~ 74 (178)
T 1r71_A 35 ELTPREIADFIGRELAKGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp CCCHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 8999999999999998178899999996999999999999
No 127
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=89.29 E-value=0.44 Score=25.36 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=26.7
Q ss_pred HHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999998--79997899999499988999999999
Q gi|254780693|r 179 TSCLQLAG--DGYTSEEIAEKLGLSVHTVNAYLGSA 212 (235)
Q Consensus 179 ~evL~l~a--~G~t~~eIA~~L~iS~~TV~~hl~~i 212 (235)
.+++++.. .|.|.++||..+|||+.||..=++..
T Consensus 12 ~~aV~l~~~~~g~s~~~vA~~~GIs~~tl~~W~k~~ 47 (97)
T 2jn6_A 12 RDAVALYENSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp HHHHHHHTTGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 999999998499859999999789957446899998
No 128
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling protein; NMR {Helicobacter pylori J99}
Probab=89.25 E-value=0.18 Score=28.17 Aligned_cols=47 Identities=9% Similarity=0.169 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHCCC----CHHHHHHHHC-----CCHHHHHHHHHHHHHHCCC
Q ss_conf 449989999999998799----9789999949-----9988999999999998079
Q gi|254780693|r 172 RNLTERETSCLQLAGDGY----TSEEIAEKLG-----LSVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~G~----t~~eIA~~L~-----iS~~TV~~hl~~i~~KLg~ 218 (235)
..||++|.++|.++++-. |-.+|...+. ++.+||+.|+.++++||+.
T Consensus 28 v~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkl~~ 83 (109)
T 2hqn_A 28 VEVKGKPFEVLTHLARHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 83 (109)
T ss_dssp EECCCSTHHHHHHHHHHTCSEEEHHHHHHHHCCSCGGGCTTHHHHHHHHHHHHTTT
T ss_pred EECCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 96499999999999967999878999999860977776744099999999998605
No 129
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- plasmid, transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A
Probab=89.25 E-value=0.62 Score=24.27 Aligned_cols=11 Identities=9% Similarity=0.193 Sum_probs=4.2
Q ss_pred CCHHHHHHHHH
Q ss_conf 99899999999
Q gi|254780693|r 174 LTERETSCLQL 184 (235)
Q Consensus 174 LT~RE~evL~l 184 (235)
+++.....+++
T Consensus 280 ~~~~~~~fi~~ 290 (305)
T 3fxq_A 280 VTPAAAGLIRW 290 (305)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 89999999999
No 130
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structural genomics, protein structure initiative; HET: GOL; 2.00A {Rhodococcus jostii RHA1}
Probab=89.16 E-value=0.74 Score=23.73 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHH---CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 449989999999998---79997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAG---DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a---~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||+.|..||..+. .|.|..+||..++++..||...++++-+|
T Consensus 35 ~gls~~q~~iL~~l~~~~~~~t~~ela~~l~~~~~~vsr~v~~L~~~ 81 (150)
T 3fm5_A 35 TGLRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEER 81 (150)
T ss_dssp GTCCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 49799999999999985989899999999788787788999989764
No 131
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=89.00 E-value=0.39 Score=25.73 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=25.0
Q ss_pred HHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999987-999789999949998899999999999
Q gi|254780693|r 179 TSCLQLAGD-GYTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 179 ~evL~l~a~-G~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
++||.++++ ..+..+|+..+++|..||..|++.+.+
T Consensus 21 ~~Il~~L~~~~~~v~ela~~l~~s~~tvS~HL~~L~~ 57 (118)
T 3f6o_A 21 RAVLGRLSRGPATVSELAKPFDMALPSFMKHIHFLED 57 (118)
T ss_dssp HHHHHHHHTCCEEHHHHHTTCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999809947999999989199999999999998
No 132
>3hef_A Gene 1 protein; bacteriophage SF6, terminase small subunit GP1, GP1 octameric assembly, GP1 channel, DNA recognition, DNA packaging; 1.65A {Enterobacteria phage SF6}
Probab=88.98 E-value=0.23 Score=27.34 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=35.1
Q ss_pred CCCCCCH-HHHHHHHHHHCCCCHHHHHHHHCC-CHHHHHHHHHH
Q ss_conf 7444998-999999999879997899999499-98899999999
Q gi|254780693|r 170 AARNLTE-RETSCLQLAGDGYTSEEIAEKLGL-SVHTVNAYLGS 211 (235)
Q Consensus 170 ~~~~LT~-RE~evL~l~a~G~t~~eIA~~L~i-S~~TV~~hl~~ 211 (235)
.+..+|+ ..-+|+.+++.|+|..+|+...|| |..||...+++
T Consensus 12 RPtk~t~e~~e~I~~~l~~G~sl~~i~~~~gvps~sT~~~Wl~~ 55 (143)
T 3hef_A 12 RPSDYMPEVADDICSLLSSGESLLKVCKRPGMPDKSTVFRWLAK 55 (143)
T ss_dssp -CCSCCHHHHHHHHHHHHTTCCHHHHHTSTTCCCHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 98657999999999999889859999870799968999999971
No 133
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} PDB: 1lnw_A 3mex_A
Probab=88.94 E-value=0.66 Score=24.10 Aligned_cols=43 Identities=12% Similarity=0.251 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 499899999999987--9997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+||+-|..||..+.. |.|..+||..++++..||...++++.+|
T Consensus 34 ~lt~~q~~iL~~l~~~~~~t~~~La~~l~i~~~~vsr~l~~L~~~ 78 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGR 78 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 979999999999997799899999999896987999999999987
No 134
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, domain, PSI, MCSG, structural genomics; 1.40A {Staphylococcus epidermidis atcc 12228}
Probab=88.85 E-value=0.89 Score=23.15 Aligned_cols=49 Identities=22% Similarity=0.177 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 4499899999999987------9997899999499988999999999998079978999
Q gi|254780693|r 172 RNLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qa 224 (235)
..||+.|+.|++++-+ -+|.++||...|+|+.||- +..+|||-.+=.+.
T Consensus 13 ~~ls~se~~Ia~yil~~~~~i~~~si~elA~~~~VS~aTi~----Rf~kklGf~gf~df 67 (107)
T 3iwf_A 13 PYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSII----RLSKKVTPGGFNEL 67 (107)
T ss_dssp GGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHH----HHHHHHSTTHHHHH
T ss_pred HHCCHHHHHHHHHHHHCHHHHHHCCHHHHHHHHCCCHHHHH----HHHHHHCCCCHHHH
T ss_conf 66399999999999959999977659999989798998999----99999588989999
No 135
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus}
Probab=88.56 E-value=0.81 Score=23.44 Aligned_cols=44 Identities=27% Similarity=0.277 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHH----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 449989999999998----79997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAG----DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a----~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||..|..||..++ .|.|..+||..++++..||..-++++-+|
T Consensus 27 ~glt~~q~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~v~~L~~~ 74 (139)
T 3eco_A 27 FDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERK 74 (139)
T ss_dssp GTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 698999999999998359999699999999896887899999999978
No 136
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=88.52 E-value=1.1 Score=22.40 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 44499899999999987--9997899999499988999999999998
Q gi|254780693|r 171 ARNLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
..+||+.|..||..+.+ |.|..+||..++++..||...++++-+|
T Consensus 24 ~~~lt~~q~~vL~~i~~~~~~t~~eLa~~~~~~~~~vs~~v~~L~~~ 70 (138)
T 3bpv_A 24 HLNLTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEES 70 (138)
T ss_dssp GGTCCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 57989999999999985899799999999897987999999999968
No 137
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding protein; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=88.42 E-value=0.69 Score=23.96 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=26.5
Q ss_pred CCCHHHHHHHH--HHHCCCCHHHHHHHH----CCCHHHHHHHHHHHHHH
Q ss_conf 49989999999--998799978999994----99988999999999998
Q gi|254780693|r 173 NLTERETSCLQ--LAGDGYTSEEIAEKL----GLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~--l~a~G~t~~eIA~~L----~iS~~TV~~hl~~i~~K 215 (235)
.||+.|.+|+. |--.+.|.+||...| +++..||.+.+.++.+|
T Consensus 7 ~Lt~~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~~Tv~t~L~RL~~K 55 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKK 55 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
T ss_conf 9899999999999868997799999985334688560699999999978
No 138
>3cjn_A Transcriptional regulator, MARR family; structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=88.31 E-value=0.85 Score=23.32 Aligned_cols=45 Identities=16% Similarity=0.152 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4449989999999998--79997899999499988999999999998
Q gi|254780693|r 171 ARNLTERETSCLQLAG--DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
..+||+-|..||..+. .|.|..+||..++++..||...++++-+|
T Consensus 47 ~~gLt~~q~~iL~~l~~~~~~t~~~La~~~~~~~~~vsr~v~~L~~~ 93 (162)
T 3cjn_A 47 ALGLSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQAD 93 (162)
T ss_dssp HHTCCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 85959999999999984799899999999897988999999999868
No 139
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, structural genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=88.27 E-value=0.95 Score=22.95 Aligned_cols=45 Identities=22% Similarity=0.154 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4449989999999998--79997899999499988999999999998
Q gi|254780693|r 171 ARNLTERETSCLQLAG--DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.-+||..|..||..+. .|.|..+||..++++..||...++++-+|
T Consensus 43 ~~gLt~~q~~iL~~L~~~~~~s~~ela~~~~~~~stvs~~i~~Le~~ 89 (207)
T 2fxa_A 43 PYDLNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEER 89 (207)
T ss_dssp GGTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 47999999999999997699499999999886987999999999968
No 140
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domains, DNA binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=88.21 E-value=0.81 Score=23.44 Aligned_cols=21 Identities=5% Similarity=0.165 Sum_probs=10.3
Q ss_pred CHHHHHHHHHHHHHHHCCCCE
Q ss_conf 599999999999998583785
Q gi|254780693|r 13 SLQELSPRLHLIQNRIKARNF 33 (235)
Q Consensus 13 sl~dl~~~l~~l~~~~~~~~f 33 (235)
|-..+...+..+.+.++..-|
T Consensus 28 sq~avS~~i~~LE~~lg~~Lf 48 (294)
T 1ixc_A 28 SQPPITRQMQALEADLGVVLL 48 (294)
T ss_dssp CHHHHHHHHHHHHHHHTSCCB
T ss_pred CHHHHHHHHHHHHHHHCCEEE
T ss_conf 889999999999998699899
No 141
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=88.15 E-value=1.2 Score=22.24 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4449989999999998--79997899999499988999999999998
Q gi|254780693|r 171 ARNLTERETSCLQLAG--DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.-+||+.|..||..+. .|.|..+||..++++..||..-++++.+|
T Consensus 35 ~~glt~~q~~vL~~L~~~~~~t~~~la~~l~i~~~~vsr~l~~L~~~ 81 (148)
T 3nrv_A 35 KFGIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEK 81 (148)
T ss_dssp GGTCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 84989999999999997799799999999896998999999998507
No 142
>2o0m_A Transcriptional regulator, SORC family; structural genomics, PSI-2, protein structure initiative; 1.60A {Enterococcus faecalis V583} SCOP: c.124.1.8
Probab=87.97 E-value=0.079 Score=30.64 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=16.4
Q ss_pred HCCCHHHHHHHHHHHHHHCCC---CCHHHHHHHHHHCCCC
Q ss_conf 499988999999999998079---9789999999976999
Q gi|254780693|r 198 LGLSVHTVNAYLGSATVKLDA---VNRIQAIAKAIRFGYI 234 (235)
Q Consensus 198 L~iS~~TV~~hl~~i~~KLg~---~nR~qava~A~~~Gli 234 (235)
++|+..+.+ ++-.+.++ ..+++|+.-|++-|+|
T Consensus 290 igi~l~~L~----~ip~~I~VA~G~~Ka~AI~aAL~gg~i 325 (345)
T 2o0m_A 290 IGLQLKNLQ----EIPYVVAIAGGKTKAKAIRAYMKNAPK 325 (345)
T ss_dssp SBCCGGGGG----GCSEEEEECCSGGGHHHHHHHHTTSCT
T ss_pred ECCCHHHHH----CCCCEEEEECCHHHHHHHHHHHHCCCC
T ss_conf 258989982----699389997672789999999957999
No 143
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomics, PSI, protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=87.95 E-value=0.89 Score=23.15 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 449989999999998--79997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAG--DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||.-|..||..+. .|.+..+||..++++..||...++++-+|
T Consensus 32 ~glt~~q~~vL~~l~~~~~~~~~~la~~l~i~~~~vs~~i~~L~~~ 77 (142)
T 2fbi_A 32 HGLTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERD 77 (142)
T ss_dssp HTCCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 4989999999999998799799999999798988999999999958
No 144
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=87.90 E-value=0.85 Score=23.29 Aligned_cols=46 Identities=15% Similarity=0.185 Sum_probs=37.8
Q ss_pred CCCCCHHHHHHHHHHHC--CCCHHHHHHHH----CCCHHHHHHHHHHHHHHC
Q ss_conf 44499899999999987--99978999994----999889999999999980
Q gi|254780693|r 171 ARNLTERETSCLQLAGD--GYTSEEIAEKL----GLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a~--G~t~~eIA~~L----~iS~~TV~~hl~~i~~KL 216 (235)
...||+.|.+|++.+=+ ..|.+||...| +.+..||.+.+.++..|=
T Consensus 4 ~~~Lt~~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~sTv~T~L~RL~~Kg 55 (82)
T 1p6r_A 4 IPQISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKG 55 (82)
T ss_dssp CCCCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
T ss_conf 8999999999999998179978999999860236972857999999999889
No 145
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=87.77 E-value=0.41 Score=25.53 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 499899999999987--9997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+||+-|..||..+.. |.|..+||..++++..||...++++-++
T Consensus 34 glt~~q~~vL~~i~~~~~~t~~~la~~l~~~~~~vs~~l~~L~~~ 78 (142)
T 2bv6_A 34 NLTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQV 78 (142)
T ss_dssp TCCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 979999999999997799899999999897987999999999988
No 146
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structural genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=87.73 E-value=0.82 Score=23.42 Aligned_cols=44 Identities=20% Similarity=0.174 Sum_probs=38.1
Q ss_pred CCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4499899999999987--9997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||..|.-||..+.. |.|..+||..++++..||...++++.+|
T Consensus 27 ~gls~~~~~iL~~l~~~~~~t~~~la~~l~~~~~~vs~~i~~L~~~ 72 (145)
T 3g3z_A 27 QDLNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQ 72 (145)
T ss_dssp TTCCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 6989999999999998799499999999896988999999999857
No 147
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=87.64 E-value=0.76 Score=23.63 Aligned_cols=43 Identities=28% Similarity=0.399 Sum_probs=34.4
Q ss_pred HHHHHHHHHH---HCCC--CHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 8999999999---8799--97899999499988999999999998079
Q gi|254780693|r 176 ERETSCLQLA---GDGY--TSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 176 ~RE~evL~l~---a~G~--t~~eIA~~L~iS~~TV~~hl~~i~~KLg~ 218 (235)
+.|..||..+ -+|. |..+||..||++.+.||.++-++.++-.|
T Consensus 14 d~e~kIl~~L~~~g~g~~~tA~~LAk~lg~~Kk~vN~~LY~L~k~g~v 61 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKL 61 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCE
T ss_conf 889999999996589876029999999698888889999999987895
No 148
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=87.42 E-value=0.66 Score=24.07 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=28.6
Q ss_pred HHHHHHHHCC-CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999879-99789999949998899999999999
Q gi|254780693|r 179 TSCLQLAGDG-YTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 179 ~evL~l~a~G-~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
..|+.++++| ++..||+..+++|..||..|++.+..
T Consensus 28 l~Il~~L~~~~~~v~eLa~~l~is~s~vS~HL~~L~~ 64 (108)
T 2kko_A 28 LQILDLLAQGERAVEAIATATGMNLTTASANLQALKS 64 (108)
T ss_dssp HHHHHHHTTCCEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999809957999999989098889999999998
No 149
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=87.37 E-value=0.89 Score=23.16 Aligned_cols=43 Identities=19% Similarity=-0.001 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 499899999999987--9997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.|+.+|..||..+.+ +.|+++++..|++|..|++.+++++..+
T Consensus 427 ~l~~~~~~iL~~l~~~~~it~~ela~~l~~s~~~~~~~L~~L~~~ 471 (583)
T 3lmm_A 427 QDDYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQT 471 (583)
T ss_dssp TTCHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 676678999999986888789999988688999999999999977
No 150
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=87.03 E-value=1.4 Score=21.80 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 449989999999998--79997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAG--DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
-+||+.|..||..+. .|.|.++||..++++..||..-++++.+|
T Consensus 29 ~gLt~~q~~vL~~i~~~~~~t~~ela~~~~~~~~~vs~~v~~L~~~ 74 (145)
T 2a61_A 29 FGITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEAD 74 (145)
T ss_dssp HTCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 5979999999999987799899999999897987899999998528
No 151
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=87.01 E-value=0.25 Score=27.06 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHH--HHHCCCCHHHHHHHHC----CCHHHHHHHHHHHHHHC
Q ss_conf 449989999999--9987999789999949----99889999999999980
Q gi|254780693|r 172 RNLTERETSCLQ--LAGDGYTSEEIAEKLG----LSVHTVNAYLGSATVKL 216 (235)
Q Consensus 172 ~~LT~RE~evL~--l~a~G~t~~eIA~~L~----iS~~TV~~hl~~i~~KL 216 (235)
-.||+.|.+|+. |-..+.|.+||...|. ++..||.+.++++.+|=
T Consensus 31 ~~LS~~E~~VM~iLW~~~~~t~~eI~~~l~~~~~~~~sTv~T~L~RL~~KG 81 (99)
T 2k4b_A 31 FNVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKE 81 (99)
T ss_dssp CCCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 699999999999999079958999999985013865566999999999889
No 152
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum}
Probab=86.83 E-value=0.56 Score=24.57 Aligned_cols=43 Identities=14% Similarity=0.221 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHH----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 49989999999998----79997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAG----DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a----~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+||+.|..||..+. .|.|..+||..++++..||..-++++-+|
T Consensus 38 glt~~q~~vL~~L~~~~~~~it~~eLa~~l~~~~~~~sr~l~~L~~~ 84 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKK 84 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 98999999999999379999399999999897785899999999988
No 153
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DNA-binding, plasmid, transcription regulation; 2.00A {Bacillus anthracis}
Probab=86.69 E-value=0.78 Score=23.57 Aligned_cols=37 Identities=16% Similarity=0.063 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 899999999987--9997899999499988999999999
Q gi|254780693|r 176 ERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSA 212 (235)
Q Consensus 176 ~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i 212 (235)
|.=.+++.++++ +.+..||+..+|+|..||-.|++-.
T Consensus 27 p~Rl~Il~~L~~~~~~~v~el~~~l~~s~stvS~HL~~L 65 (99)
T 2zkz_A 27 PMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKM 65 (99)
T ss_dssp HHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 999999999977899279998998884976999999999
No 154
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=86.60 E-value=1.3 Score=22.08 Aligned_cols=38 Identities=8% Similarity=0.057 Sum_probs=26.2
Q ss_pred CCCHHHH--HHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 4998999--99999987--99978999994999889999999
Q gi|254780693|r 173 NLTERET--SCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 173 ~LT~RE~--evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~ 210 (235)
.||+-|+ .+.+++.+ |+|-+|||..||+|..+|..+++
T Consensus 23 ~lS~~E~a~~y~rlL~~~~~~tq~eLA~~lG~Srs~VS~~L~ 64 (189)
T 3mky_B 23 PTSAYERGQRYASRLQNEFAGNISALADAENISRKIITRCIN 64 (189)
T ss_dssp CCCHHHHHHHHHHHHHTTTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 899999999999999864388899999997979999999998
No 155
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=86.45 E-value=0.72 Score=23.80 Aligned_cols=44 Identities=11% Similarity=0.016 Sum_probs=38.8
Q ss_pred CCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4499899999999987--9997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||..|..||..+.+ +.|..+||..|+++..||...++++-+|
T Consensus 49 ~gLt~~q~~vL~~l~~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~ 94 (161)
T 3e6m_A 49 EKLPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDE 94 (161)
T ss_dssp HTCCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 6979999999999997799899999999897887999999999838
No 156
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=86.12 E-value=0.76 Score=23.64 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHHC--C--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4499899999999987--9--997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAGD--G--YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~--G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
-+||.-|..||..+.+ | .|..+||..++++..||...++++.+|
T Consensus 33 ~~lt~~q~~iL~~l~~~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~ 80 (127)
T 2frh_A 33 FSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQE 80 (127)
T ss_dssp TCCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 597999999999998289998789999999798873699999999978
No 157
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, protein structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=86.11 E-value=1.1 Score=22.48 Aligned_cols=11 Identities=9% Similarity=0.090 Sum_probs=3.8
Q ss_pred CHHHHHHHHHH
Q ss_conf 98999999999
Q gi|254780693|r 175 TERETSCLQLA 185 (235)
Q Consensus 175 T~RE~evL~l~ 185 (235)
++.-+..+.++
T Consensus 284 ~~~~~~fi~~l 294 (306)
T 3fzv_A 284 TKPARLFVDYC 294 (306)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
T ss_conf 99999999999
No 158
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=86.07 E-value=1.3 Score=22.10 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4499899999999987--9997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||..|..||..+.. |.|..+||..++++..||...++++-+|
T Consensus 42 ~glt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~~vs~~l~~L~~~ 87 (162)
T 3k0l_A 42 LEISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLAN 87 (162)
T ss_dssp TTCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 5979999999999997799899999999896886999999999988
No 159
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=86.02 E-value=1.6 Score=21.44 Aligned_cols=30 Identities=10% Similarity=-0.032 Sum_probs=16.4
Q ss_pred CCEEEEEEECCCCCC-EEEEECCCCCCCCHH
Q ss_conf 535899721688752-345410588789989
Q gi|254780693|r 115 FAGIAFPVRLGFHKN-GYVIFTSEFLMLANE 144 (235)
Q Consensus 115 ~~~~~~pv~~~~~~~-~~~~~~~~~~~~~~~ 144 (235)
..++.+||++..+.. +.++..+.......+
T Consensus 197 v~~iAvPV~~~~g~~~aalsv~~~~~~~~~~ 227 (249)
T 1mkm_A 197 IMCVGVPIFDHNGYPVAGVSISGVARKFTEE 227 (249)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEGGGCCHH
T ss_pred CEEEEEEEECCCCCEEEEEEEEEEHHHCCHH
T ss_conf 5799999888999799999987674758998
No 160
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transcription regulation; NMR {Escherichia coli K12} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=85.77 E-value=0.38 Score=25.82 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=34.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHCCCC
Q ss_conf 99789999949998899999999999--80799789999999976999
Q gi|254780693|r 189 YTSEEIAEKLGLSVHTVNAYLGSATV--KLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 189 ~t~~eIA~~L~iS~~TV~~hl~~i~~--KLg~~nR~qava~A~~~Gli 234 (235)
.|-++||+..|+|..||-..+.+--. +....+|..--..|-.+||.
T Consensus 1 vTlkdIA~~aGVS~sTVSrvLng~~~~~~Vs~~Tr~rV~~~a~~lgY~ 48 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREHNYH 48 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 979999999885999999998599987877999999999999998889
No 161
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=85.23 E-value=1.6 Score=21.32 Aligned_cols=43 Identities=12% Similarity=0.034 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHC----CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 499899999999987----9997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGD----GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~----G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+||..|..||..+.. +.+.++||..++++..||...++++.+|
T Consensus 155 ~Ls~~e~~vL~~L~~~~~~~~~~~~la~~l~~~~~~vs~~i~~L~~~ 201 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQ 201 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 98999999999998699996769999999788850699999999988
No 162
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A
Probab=85.22 E-value=1.5 Score=21.55 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 49989999999998-79997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAG-DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a-~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+||.-|..||..++ .|.|..+||..|+++..||...++++-+|
T Consensus 35 glt~~q~~iL~~l~~~~~t~~~la~~l~i~~~~vs~~i~~L~~~ 78 (151)
T 3kp7_A 35 GISAEQSHVLNMLSIEALTVGQITEKQGVNKAAVSRRVKKLLNA 78 (151)
T ss_dssp TCCHHHHHHHHHHHHSCBCHHHHHHHHCSCSSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999999999986289999999999896888999999999888
No 163
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, structural genomics; 2.38A {Bacillus cereus atcc 10987}
Probab=83.95 E-value=1.9 Score=20.80 Aligned_cols=44 Identities=7% Similarity=0.154 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4499899999999987--9997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||+-|..||..+.. |.|..+||..++++..||...++++-+|
T Consensus 29 ~~lt~~q~~vL~~l~~~~~~t~~~La~~l~~~~~tvs~~l~~L~~~ 74 (139)
T 3bja_A 29 YDISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRD 74 (139)
T ss_dssp GTCCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 6989999999999998699899999847086888999999999988
No 164
>1z91_A Organic hydroperoxide resistance transcriptional regulator; OHRR, MARR family, bacterial transcription factor, DNA binding protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=83.67 E-value=1.5 Score=21.59 Aligned_cols=44 Identities=23% Similarity=0.193 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 449989999999998--79997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAG--DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||+-|..||..+. .|.|..+||..++|+..||..-++++-+|
T Consensus 36 ~glt~~q~~vL~~l~~~~~~t~~eLa~~~~i~~~tit~~i~~L~~~ 81 (147)
T 1z91_A 36 LNITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQ 81 (147)
T ss_dssp TCCCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 6989999999999997799499999999797887899999999988
No 165
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=83.64 E-value=1.5 Score=21.48 Aligned_cols=37 Identities=27% Similarity=0.227 Sum_probs=31.7
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 9999879997899999499988999999999998079
Q gi|254780693|r 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 182 L~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~ 218 (235)
.+..-.+.|-++|+..-+||+.|++...+.++..|+-
T Consensus 159 ~~~~~~~~t~~~Ia~~~~vs~~TI~k~~kel~~~l~~ 195 (200)
T 1ais_B 159 SLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKLKI 195 (200)
T ss_dssp HHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 9985899899999989698898899999999988454
No 166
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein structure initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=83.57 E-value=1.9 Score=20.76 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHHHCCCCE
Q ss_conf 599999999999998583785
Q gi|254780693|r 13 SLQELSPRLHLIQNRIKARNF 33 (235)
Q Consensus 13 sl~dl~~~l~~l~~~~~~~~f 33 (235)
|-..+..++..+.+.++..-|
T Consensus 37 sq~avS~~i~~LE~~lG~~Lf 57 (310)
T 2esn_A 37 SASAFSHALGRLRQGLDDELF 57 (310)
T ss_dssp CHHHHHHHHHHHHHHHTSCCE
T ss_pred CHHHHHHHHHHHHHHHCCEEE
T ss_conf 989999999999999599489
No 167
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=82.89 E-value=2.1 Score=20.51 Aligned_cols=44 Identities=16% Similarity=0.158 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHHHH--CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 449989999999998--79997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAG--DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a--~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||.-|..||..+. .|.|.++||..++++..||...++++-+|
T Consensus 30 ~~lt~~q~~vL~~l~~~~~~t~~ela~~~~~~~~~vs~~l~~L~~~ 75 (138)
T 1jgs_A 30 LDITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCK 75 (138)
T ss_dssp TTSCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 5969999999999987799899999999897887999999999868
No 168
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=82.79 E-value=2.1 Score=20.48 Aligned_cols=46 Identities=26% Similarity=0.488 Sum_probs=37.3
Q ss_pred CCCCHHHHHHH-HHHHCCC--------CHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 44998999999-9998799--------9789999949998899999999999807
Q gi|254780693|r 172 RNLTERETSCL-QLAGDGY--------TSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 172 ~~LT~RE~evL-~l~a~G~--------t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
..+|+-+.++| .|..+.. .-.+||..+|+++..|+.-..|.++|..
T Consensus 6 ~~~s~~q~~~L~~~f~~~~~~pyP~~~~~~~La~~~gl~~~qV~~WF~N~R~r~k 60 (87)
T 1b72_B 6 RNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 60 (87)
T ss_dssp CCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999838889979999999999988298899899999998873
No 169
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcriptional regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A
Probab=82.77 E-value=2.1 Score=20.48 Aligned_cols=44 Identities=18% Similarity=0.142 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 4499899999999987--9997899999499988999999999998
Q gi|254780693|r 172 RNLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.+||.-|..||..+.. |.|..+||..++++..||..-++++-+|
T Consensus 32 ~glt~~q~~vL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~ 77 (140)
T 3hsr_A 32 YDLTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKK 77 (140)
T ss_dssp GTCCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 5999999999999986799899999999897864799999999727
No 170
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structural genomics, PSI; NMR {Pyrococcus furiosus dsm 3638} SCOP: a.4.5.82
Probab=81.99 E-value=0.97 Score=22.89 Aligned_cols=45 Identities=22% Similarity=0.186 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCC----CHHHHHHHHHHHHHHCCC
Q ss_conf 998999999999879997899999499----988999999999998079
Q gi|254780693|r 174 LTERETSCLQLAGDGYTSEEIAEKLGL----SVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 174 LT~RE~evL~l~a~G~t~~eIA~~L~i----S~~TV~~hl~~i~~KLg~ 218 (235)
-|.||+=+-.|.-.-+|..|||.+|+| ++.-|..|+..|.+-+.-
T Consensus 10 ~T~RerIi~lL~~~~~s~~eia~~l~l~~~~~~k~v~~hL~Hiaks~kr 58 (105)
T 2gmg_A 10 ATRREKIIELLLEGDYSPSELARILDMRGKGSKKVILEDLKVISKIAKR 58 (105)
T ss_dssp HHHHHHHHHHTTTSCBCTTHHHHSSCCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 2399999999983999999999995766555278999999999976622
No 171
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=81.40 E-value=2.4 Score=20.14 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=4.1
Q ss_pred HHHCCCCEEE
Q ss_conf 9858378589
Q gi|254780693|r 26 NRIKARNFAL 35 (235)
Q Consensus 26 ~~~~~~~f~~ 35 (235)
+.+...|+..
T Consensus 46 ~~L~~~Glv~ 55 (230)
T 1fx7_A 46 SRMERDGLLR 55 (230)
T ss_dssp HHHHHTTSEE
T ss_pred HHHHHCCCEE
T ss_conf 9998888989
No 172
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein structure initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=81.01 E-value=1.2 Score=22.21 Aligned_cols=38 Identities=18% Similarity=0.198 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 499899999999987999789999949998899999999
Q gi|254780693|r 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
..|+++..-++ -..|+|-++.|..||||.+||..+=+.
T Consensus 89 ~~~~e~i~~~R-~~~glsQ~~lA~~lGvs~~ti~~~E~G 126 (170)
T 2auw_A 89 EVSHEMFGDWM-HRNNLSLTTAAEALGISRRMVSYYRTA 126 (170)
T ss_dssp CCCHHHHHHHH-HHTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCCHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 68899999999-986999999999959999999999779
No 173
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=80.91 E-value=1.3 Score=22.06 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=13.4
Q ss_pred CCEEEEEEECCCCCC-EEEEECC
Q ss_conf 535899721688752-3454105
Q gi|254780693|r 115 FAGIAFPVRLGFHKN-GYVIFTS 136 (235)
Q Consensus 115 ~~~~~~pv~~~~~~~-~~~~~~~ 136 (235)
..++.+|+++..+.. +.+++.+
T Consensus 205 ~~~iAvPV~~~~g~~~aalsv~~ 227 (260)
T 2o0y_A 205 SSGLSFPLVDSHGTVVAALTLGG 227 (260)
T ss_dssp EEEEEEEEECTTCCEEEEEEEEE
T ss_pred CEEEEEEEECCCCCEEEEEEEEE
T ss_conf 57999999989999999999976
No 174
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=80.74 E-value=0.58 Score=24.46 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=31.2
Q ss_pred CHHHHHHH-HHHHCCCC-HHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98999999-99987999-7899999499988999999999998079
Q gi|254780693|r 175 TERETSCL-QLAGDGYT-SEEIAEKLGLSVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 175 T~RE~evL-~l~a~G~t-~~eIA~~L~iS~~TV~~hl~~i~~KLg~ 218 (235)
|..|..++ .++..|.+ -+++|..|++++..|+.-+.+. .++|+
T Consensus 163 ~~~~~~ll~~~l~~~~~~~dela~~l~l~~~eV~~~l~~l-~~~g~ 207 (232)
T 2qlz_A 163 DMTQLAILHYLLLNGRATVEELSDRLNLKEREVREKISEM-ARFVP 207 (232)
T ss_dssp CTTHHHHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHH-TTTSC
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH-HHHCC
T ss_conf 6999999987761699889999978493999999999999-86430
No 175
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Rhodococcus SP}
Probab=80.52 E-value=1.4 Score=21.86 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=16.4
Q ss_pred CCEEEEEEECCCCCC-EEEEECCCCCCCCH
Q ss_conf 535899721688752-34541058878998
Q gi|254780693|r 115 FAGIAFPVRLGFHKN-GYVIFTSEFLMLAN 143 (235)
Q Consensus 115 ~~~~~~pv~~~~~~~-~~~~~~~~~~~~~~ 143 (235)
..++.+|+++..+.. +.+...+.......
T Consensus 209 ~~~iAvPv~~~~g~~~~alsv~~~~~r~~~ 238 (265)
T 2ia2_A 209 LRSMAAPIRGASGLTVAAVNISTPAARYSL 238 (265)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEGGGCCH
T ss_pred CEEEEEEEECCCCCEEEEEEEEEEHHHCCH
T ss_conf 359999998899989999998767554999
No 176
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, MCSG, PSI, protein structure initiative, midwest center for structural genomics; 2.30A {Rhodococcus SP}
Probab=80.30 E-value=1.9 Score=20.84 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=17.4
Q ss_pred CCEEEEEEECCCCCC-EEEEECCCCCCCCHHH
Q ss_conf 535899721688752-3454105887899899
Q gi|254780693|r 115 FAGIAFPVRLGFHKN-GYVIFTSEFLMLANEV 145 (235)
Q Consensus 115 ~~~~~~pv~~~~~~~-~~~~~~~~~~~~~~~~ 145 (235)
..++.+|+++..+.. +.+++.........+.
T Consensus 202 ~~~iAvPv~~~~g~~~aalsv~~p~~r~~~~~ 233 (257)
T 2g7u_A 202 LISLAAPVHDAGGTVVGVVACSTSSARNTPAQ 233 (257)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEETTTCCHHH
T ss_pred CEEEEEEEECCCCCEEEEEEEEEEHHHCCHHH
T ss_conf 62999999989998999999976733389889
No 177
>3c2b_A Transcriptional regulator, TETR family; structural genomics, APC5923, PSI-2, protein structure initiative; 2.10A {Agrobacterium tumefaciens str}
Probab=79.34 E-value=1.9 Score=20.73 Aligned_cols=16 Identities=0% Similarity=-0.166 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 8999999999998079
Q gi|254780693|r 203 HTVNAYLGSATVKLDA 218 (235)
Q Consensus 203 ~TV~~hl~~i~~KLg~ 218 (235)
..|+..+....+-+|+
T Consensus 192 ~~~~~av~~fL~~~g~ 207 (221)
T 3c2b_A 192 ARAKKAVVAFLTLYGT 207 (221)
T ss_dssp HHHHHHHHHHHHHHBC
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999998589
No 178
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=78.78 E-value=1.4 Score=21.84 Aligned_cols=15 Identities=20% Similarity=0.177 Sum_probs=6.8
Q ss_pred HCCCCHHHHHHHHCC
Q ss_conf 879997899999499
Q gi|254780693|r 186 GDGYTSEEIAEKLGL 200 (235)
Q Consensus 186 a~G~t~~eIA~~L~i 200 (235)
..|.+-++|...|.-
T Consensus 59 ~~G~sl~eIk~ll~~ 73 (146)
T 3hh0_A 59 HLGFSLGEIQNIILQ 73 (146)
T ss_dssp HTTCCHHHHHHHHTS
T ss_pred HCCCCHHHHHHHHHC
T ss_conf 969999999999874
No 179
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=78.69 E-value=2.9 Score=19.55 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHC----C-CCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 899999999987----9-99789999949998899999999
Q gi|254780693|r 176 ERETSCLQLAGD----G-YTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 176 ~RE~evL~l~a~----G-~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
+|=.+++.++-+ . .+.+++|..+|+|+++.....+.
T Consensus 3 ~ri~~~~~~i~~~~~~~~~~l~~lA~~~~~s~~~l~r~fk~ 43 (107)
T 2k9s_A 3 NRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 89999999999756799979999999989299999999999
No 180
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=78.66 E-value=1.4 Score=21.84 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=14.2
Q ss_pred CCHHHHHHHH----HHHCCCCHHHHHHHHCCC
Q ss_conf 9989999999----998799978999994999
Q gi|254780693|r 174 LTERETSCLQ----LAGDGYTSEEIAEKLGLS 201 (235)
Q Consensus 174 LT~RE~evL~----l~a~G~t~~eIA~~L~iS 201 (235)
.|+...+-|. +-..|.+-++|...|.-+
T Consensus 41 Y~~~~v~~l~~I~~lr~~G~sl~ei~~~l~~~ 72 (109)
T 1r8d_A 41 YSDADLERLQQILFFKEIGFRLDEIKEMLDHP 72 (109)
T ss_dssp BCHHHHHHHHHHHHHHHTTCCHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCC
T ss_conf 66999999999999999699999999998355
No 181
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B*
Probab=78.55 E-value=2.5 Score=19.95 Aligned_cols=38 Identities=16% Similarity=0.132 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 499899999999987999789999949998899999999
Q gi|254780693|r 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
.++|.+..-++. ..|+|-++.|..||+|..||..+=+.
T Consensus 70 ~~~~e~ir~~R~-~~glsQ~elA~~lg~~~~ti~~~E~G 107 (133)
T 3o9x_A 70 TVAPEFIVKVRK-KLSLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TCCHHHHHHHHH-HTTCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred CCCHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 899999999999-84999999999959999999999869
No 182
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens}
Probab=78.54 E-value=2.4 Score=20.08 Aligned_cols=44 Identities=16% Similarity=0.254 Sum_probs=34.5
Q ss_pred CCCHHHHHHH-HHHHCCC--------CHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 4998999999-9998799--------978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCL-QLAGDGY--------TSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL-~l~a~G~--------t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.|++...+|| .|..+-. .-.++|..+|+|+.-|+.-..|.++|+
T Consensus 4 ~fp~e~~~iL~~wf~~h~~~PYPs~~ek~~La~~~~ls~~qV~~WF~N~R~R~ 56 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRI 56 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 29899999999999986638998999999999998909999989999989761
No 183
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TETR family, PSI-2, protein structure initiative; 1.70A {Streptomyces coelicolor A3}
Probab=78.24 E-value=0.82 Score=23.42 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=8.9
Q ss_pred HHHCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 8622599999999999998583785
Q gi|254780693|r 9 KKSSSLQELSPRLHLIQNRIKARNF 33 (235)
Q Consensus 9 ~~~~sl~dl~~~l~~l~~~~~~~~f 33 (235)
++-.+.+.+ +.+..+.+...||
T Consensus 26 rr~~tre~I---l~AA~~l~~e~G~ 47 (241)
T 2hxi_A 26 RRRWSTEQI---LDAAAELLLAGDA 47 (241)
T ss_dssp --CCCHHHH---HHHHHHHHSSSSC
T ss_pred CCCCHHHHH---HHHHHHHHHHHCC
T ss_conf 521189999---9999999997291
No 184
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.18 E-value=3 Score=19.44 Aligned_cols=47 Identities=21% Similarity=0.390 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHH-CCCC---------HHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 74449989999999998-7999---------78999994999889999999999980
Q gi|254780693|r 170 AARNLTERETSCLQLAG-DGYT---------SEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 170 ~~~~LT~RE~evL~l~a-~G~t---------~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
....+|+.++++|+-.- .++. -.+||..+|++++.|+.-..|-+.|+
T Consensus 11 ~Rt~ft~eQ~~~Le~~F~~n~~~~~~P~~e~~~~La~~~gl~~~~v~~WF~NrR~k~ 67 (80)
T 2da4_A 11 DRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKY 67 (80)
T ss_dssp SSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999899999999999999827788898999999999998969999999999999998
No 185
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=77.62 E-value=1.4 Score=21.72 Aligned_cols=36 Identities=17% Similarity=0.180 Sum_probs=28.2
Q ss_pred HHHHHHH--------CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999998--------79997899999499988999999999998
Q gi|254780693|r 180 SCLQLAG--------DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 180 evL~l~a--------~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
++.+++. +|.+..+||..||||+.|+..-++.....
T Consensus 14 ~AV~lv~e~~~~~~s~g~~~~~va~~Lgi~~~tl~~Wv~~~~~~ 57 (108)
T 2rn7_A 14 RAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERD 57 (108)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999998543455455519999999797999999999997230
No 186
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=77.31 E-value=3.1 Score=19.27 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHHHCCC-----CH----HHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 49989999999998799-----97----8999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLAGDGY-----TS----EEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G~-----t~----~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.|++.+.+||.-.-.-. -+ .+||..+|+|+..|+.-..|.++|.
T Consensus 13 ~~~~~~~~~L~~~f~~~~~nPYPs~~ek~~La~~~gl~~~qV~~WF~N~R~R~ 65 (73)
T 1x2n_A 13 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRI 65 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 79999999999999987427996999999999998819999899899999985
No 187
>3bqy_A Putative TETR family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.95A {Streptomyces coelicolor A3}
Probab=77.30 E-value=1.4 Score=21.69 Aligned_cols=12 Identities=25% Similarity=0.030 Sum_probs=4.1
Q ss_pred HHCCCCHHHHHH
Q ss_conf 987999789999
Q gi|254780693|r 185 AGDGYTSEEIAE 196 (235)
Q Consensus 185 ~a~G~t~~eIA~ 196 (235)
.....+...++.
T Consensus 167 ~l~~~~~~~l~~ 178 (209)
T 3bqy_A 167 AVAAGTYPHLAA 178 (209)
T ss_dssp HCCTTTCHHHHH
T ss_pred HHCCCCCHHHHH
T ss_conf 525564689998
No 188
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=77.06 E-value=3.1 Score=19.34 Aligned_cols=11 Identities=9% Similarity=0.286 Sum_probs=4.4
Q ss_pred HHHCCCCEEEE
Q ss_conf 98583785899
Q gi|254780693|r 26 NRIKARNFALY 36 (235)
Q Consensus 26 ~~~~~~~f~~~ 36 (235)
..+...+|..+
T Consensus 42 ~rL~~~g~i~~ 52 (214)
T 3hrs_A 42 KKLLAEELLIK 52 (214)
T ss_dssp HHHHHTTSEEE
T ss_pred HHHHHCCCEEE
T ss_conf 99997899897
No 189
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MARR), structural genomics, PSI-2; HET: MSE; 2.04A {Oenococcus oeni psu-1} SCOP: a.4.5.28
Probab=76.86 E-value=3.2 Score=19.19 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHC--C--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 499899999999987--9--997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGD--G--YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~--G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+||+-|..||..+++ | .|..+||..|+++..||..-++++-+|
T Consensus 31 glt~~q~~vL~~l~~~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~ 77 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIK 77 (141)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 98999999999998489999599999999897885899999999887
No 190
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=76.29 E-value=1.9 Score=20.79 Aligned_cols=13 Identities=15% Similarity=0.112 Sum_probs=4.7
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+.+..+.+.-.||
T Consensus 29 L~AA~~lf~~~G~ 41 (231)
T 2zcx_A 29 LDAARELGTERGI 41 (231)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999997492
No 191
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=76.25 E-value=3.3 Score=19.08 Aligned_cols=44 Identities=14% Similarity=0.100 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 998999999999879997899999499988999999999998079
Q gi|254780693|r 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 174 LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~ 218 (235)
.+.|..+|.+-- .|.+..+.|.+-++|+++|..-++...+.--.
T Consensus 79 ~~~Rn~~I~~ef-~G~n~~eLArkY~LS~r~I~~Ii~~~rk~~~~ 122 (129)
T 1rr7_A 79 SLIRDLRIWNDF-NGRNVSELTTRYGVTFNTVYKAIRRMRRLKYR 122 (129)
T ss_dssp HHHHHHHHHHHC-CSSCHHHHHHHHTCCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 999999999990-89989999999897899999999999999998
No 192
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=76.25 E-value=2.4 Score=20.08 Aligned_cols=27 Identities=19% Similarity=0.283 Sum_probs=23.4
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 987999789999949998899999999
Q gi|254780693|r 185 AGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 185 ~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
...|+|-+|+|..+|||+.||..+-+.
T Consensus 33 ~~~glTq~elA~~lgvs~~tis~~E~G 59 (111)
T 3mlf_A 33 TDYGLTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHHC
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 985999999999969899999999849
No 193
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=76.23 E-value=1.6 Score=21.38 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=10.9
Q ss_pred HHHHCCCCHHHHHHHHCCCH
Q ss_conf 99987999789999949998
Q gi|254780693|r 183 QLAGDGYTSEEIAEKLGLSV 202 (235)
Q Consensus 183 ~l~a~G~t~~eIA~~L~iS~ 202 (235)
.+-..|.+-++|...|.-+.
T Consensus 53 ~lr~~G~sl~eI~~~l~~~~ 72 (108)
T 2vz4_A 53 FYRELGFPLDEVAALLDDPA 72 (108)
T ss_dssp HHHHTTCCHHHHHHHHTC--
T ss_pred HHHHCCCCHHHHHHHHHCCC
T ss_conf 99996999999999982787
No 194
>1z05_A Transcriptional regulator, ROK family; structural genomics, PSI, protein structure initiative; 2.00A {Vibrio cholerae o1 biovar eltor str} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=76.18 E-value=3.1 Score=19.30 Aligned_cols=19 Identities=16% Similarity=0.251 Sum_probs=9.1
Q ss_pred CCCCCCHHHHHHHHHHHCCCC
Q ss_conf 744499899999999987999
Q gi|254780693|r 170 AARNLTERETSCLQLAGDGYT 190 (235)
Q Consensus 170 ~~~~LT~RE~evL~l~a~G~t 190 (235)
....+|-++ +.+...+|..
T Consensus 314 ~~~~~~~~~--i~~~a~~gD~ 332 (429)
T 1z05_A 314 TVEEISIED--ICAAAADGDP 332 (429)
T ss_dssp TCSSCCHHH--HHHHHHTTCH
T ss_pred CCCCCCHHH--HHHHHHCCCH
T ss_conf 533389999--9999983989
No 195
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=75.86 E-value=3.4 Score=19.01 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=35.8
Q ss_pred CCCHHHHHHHH---------HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 49989999999---------9987999789999949998899999999999807997899999999769
Q gi|254780693|r 173 NLTERETSCLQ---------LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 (235)
Q Consensus 173 ~LT~RE~evL~---------l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~G 232 (235)
.+|+.+.+..+ ....|+|-+++|..+|||..+|..+-+.- .-.+...+...|-.+|
T Consensus 6 ~~~~~~~~~~~~l~~~l~~~R~~~glTQ~~lA~~lgis~~~is~~E~G~----~~~s~~~l~~la~~l~ 70 (92)
T 1lmb_3 6 PLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGI----NALNAYNAALLAKILK 70 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHTTS----SCCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 9998999999999999999999929999999998847898999997799----8999999999999989
No 196
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=75.75 E-value=3.1 Score=19.32 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=18.6
Q ss_pred CCHHH-HHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99899-9999999879--99789999949998899999999
Q gi|254780693|r 174 LTERE-TSCLQLAGDG--YTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 174 LT~RE-~evL~l~a~G--~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
||..| .+|+..+-.| .+..+||...||++.||..-+++
T Consensus 8 ~t~~~K~~vi~~~~~~~~~~~~~iAk~fgv~~sTi~~~~k~ 48 (131)
T 1hlv_A 8 LTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKN 48 (131)
T ss_dssp CCHHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 89999999999999778888999999989199999999924
No 197
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=75.66 E-value=3.4 Score=18.97 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHH-CC-C-----CHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 4449989999999998-79-9-----978999994999889999999999980
Q gi|254780693|r 171 ARNLTERETSCLQLAG-DG-Y-----TSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a-~G-~-----t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
...+|+-+.++|.-.= .. . +-++||..||++++.|+.-..|=+.|.
T Consensus 5 r~~fT~~Ql~~Le~~F~~~~~yP~~~~r~~LA~~lgL~~~~V~vWFqNrRak~ 57 (72)
T 1uhs_A 5 AATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEW 57 (72)
T ss_dssp CCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 78889999999999999857998999999999995898888888079888998
No 198
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=75.39 E-value=1.9 Score=20.76 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=5.3
Q ss_pred HCCCCHHHHHHHH
Q ss_conf 8799978999994
Q gi|254780693|r 186 GDGYTSEEIAEKL 198 (235)
Q Consensus 186 a~G~t~~eIA~~L 198 (235)
..|.|-++|...|
T Consensus 55 ~~G~sl~~I~~~l 67 (135)
T 1q06_A 55 QVGFNLEESGELV 67 (135)
T ss_dssp HTTCCHHHHHHHH
T ss_pred HCCCCHHHHHHHH
T ss_conf 8399999999998
No 199
>2vke_A Tetracycline repressor protein class D; transcription, metal-binding, helix-turn-helix, transcription regulator, transcription regulation; HET: TAC; 1.62A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 1bjy_A* 1bj0_A 1du7_A* 1ork_A* 2fj1_A* 1bjz_A* 2o7o_A* 2tct_A* 2trt_A* 1qpi_A* 1a6i_A 2vkv_A* 3fk7_A* 3fk6_A* 2ns7_A 2ns8_A
Probab=75.29 E-value=1.8 Score=21.00 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 8899999999999807
Q gi|254780693|r 202 VHTVNAYLGSATVKLD 217 (235)
Q Consensus 202 ~~TV~~hl~~i~~KLg 217 (235)
+..++..+..+.++|.
T Consensus 186 ~~~l~~~L~Gl~a~~~ 201 (207)
T 2vke_A 186 LHGLESLIRGFEVQLT 201 (207)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999998
No 200
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=75.06 E-value=3.3 Score=19.14 Aligned_cols=45 Identities=9% Similarity=0.244 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHC--CC--------CHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 499899999999987--99--------9789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAGD--GY--------TSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a~--G~--------t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.+|+-+.+.|+-..+ +. .-+++|..|||++++|+.-..|-+.+..
T Consensus 23 ~~t~~Q~~~L~~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~v~vWF~N~R~~~k 77 (80)
T 1wh5_A 23 KFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGP 77 (80)
T ss_dssp CCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHEEEECCCCCCCCC
T ss_conf 1799999999999998424456989999999999978988894344644776678
No 201
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=74.54 E-value=3.1 Score=19.30 Aligned_cols=43 Identities=19% Similarity=0.086 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHH---------CCCCCHHHHHHHHHH
Q ss_conf 9997899999499988999999999998---------079978999999997
Q gi|254780693|r 188 GYTSEEIAEKLGLSVHTVNAYLGSATVK---------LDAVNRIQAIAKAIR 230 (235)
Q Consensus 188 G~t~~eIA~~L~iS~~TV~~hl~~i~~K---------Lg~~nR~qava~A~~ 230 (235)
-.|.++||..+|+|+.||..-++...++ +-+.|.-.+...|-+
T Consensus 177 ~lt~~~LA~~lgisr~tvsR~l~~L~~~giI~~~~~~i~I~d~~~L~~~a~~ 228 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLGELKHLSEQ 228 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECSSEEEESCHHHHHHHHTS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHHHHHCC
T ss_conf 8689999989799999999999999988989964999998789999998757
No 202
>2fmy_A COOA, carbon monoxide oxidation system transcription regulator COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=74.42 E-value=3 Score=19.41 Aligned_cols=29 Identities=34% Similarity=0.352 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 79997899999499988999999999998
Q gi|254780693|r 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 187 ~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
...|.++||..+|+|+.||+..++...++
T Consensus 166 ~~lt~~~lA~~lg~sr~tvsr~l~~l~~~ 194 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKM 194 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred ECCHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 07249999999799999999999999988
No 203
>3dew_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=74.37 E-value=1.3 Score=22.06 Aligned_cols=10 Identities=10% Similarity=0.212 Sum_probs=3.8
Q ss_pred HHHHHHHCCC
Q ss_conf 9999998799
Q gi|254780693|r 180 SCLQLAGDGY 189 (235)
Q Consensus 180 evL~l~a~G~ 189 (235)
+.+.++.+|.
T Consensus 188 ~~~~~~l~gl 197 (206)
T 3dew_A 188 QYVAIFTRGI 197 (206)
T ss_dssp HHHHHHHHCS
T ss_pred HHHHHHHHHH
T ss_conf 9999999772
No 204
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum sensing, DNA-binding; 2.30A {Xanthomonas campestris PV}
Probab=74.29 E-value=3.2 Score=19.23 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99789999949998899999999999
Q gi|254780693|r 189 YTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 189 ~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
.|.++||..+|+|+.||..-++...+
T Consensus 188 lt~~~lA~~lg~sr~tv~R~l~~l~~ 213 (230)
T 3iwz_A 188 VSRQELARLVGCSREMAGRVLKKLQA 213 (230)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 89999999979989999999999997
No 205
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=74.27 E-value=1.4 Score=21.79 Aligned_cols=26 Identities=19% Similarity=0.250 Sum_probs=10.7
Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCE
Q ss_conf 98622599999999999998583785
Q gi|254780693|r 8 GKKSSSLQELSPRLHLIQNRIKARNF 33 (235)
Q Consensus 8 ~~~~~sl~dl~~~l~~l~~~~~~~~f 33 (235)
|++...-+.-+..+.+..+.+.-.||
T Consensus 10 ~R~~~~~~tr~~Il~aA~~lf~~~G~ 35 (218)
T 3gzi_A 10 GRPSGDTQNRDKLILAARNLFIERPY 35 (218)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999579999999999999997491
No 206
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=74.05 E-value=3 Score=19.37 Aligned_cols=11 Identities=9% Similarity=0.292 Sum_probs=4.3
Q ss_pred HHHHHHCCCCE
Q ss_conf 99998583785
Q gi|254780693|r 23 LIQNRIKARNF 33 (235)
Q Consensus 23 ~l~~~~~~~~f 33 (235)
.+.+.+-..++
T Consensus 75 ~lLr~L~a~Gl 85 (352)
T 3mcz_A 75 ILLHALAALGL 85 (352)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHCCC
T ss_conf 99999986892
No 207
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TETR family, rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=73.96 E-value=1.5 Score=21.47 Aligned_cols=16 Identities=6% Similarity=0.067 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHCCC
Q ss_conf 8999999999998079
Q gi|254780693|r 203 HTVNAYLGSATVKLDA 218 (235)
Q Consensus 203 ~TV~~hl~~i~~KLg~ 218 (235)
.+.+..+..++..|..
T Consensus 188 ~~~~~~~~~~~~~l~~ 203 (215)
T 2hku_A 188 YSLEEAVAVIFANLQI 203 (215)
T ss_dssp CSHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHCCCC
T ss_conf 7799999999867889
No 208
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA- binding, nucleotide-binding, transcription; HET: CMP; 1.66A {Escherichia coli k-12} PDB: 3fwe_A 1g6n_A* 2cgp_A* 3hif_A 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 1hw5_A* 1ruo_A* 1i6x_A* 1cgp_A* 1o3t_A* ...
Probab=73.82 E-value=3.3 Score=19.10 Aligned_cols=27 Identities=30% Similarity=0.277 Sum_probs=23.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 997899999499988999999999998
Q gi|254780693|r 189 YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 189 ~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.|.++||..+|+|..||..-++...++
T Consensus 218 lt~~~LA~~lG~sr~tvsR~l~~L~~~ 244 (260)
T 3kcc_A 218 ITRQEIGQIVGCSRETVGRILKMLEDQ 244 (260)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 899999999799899999999999979
No 209
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=73.81 E-value=3.8 Score=18.66 Aligned_cols=23 Identities=9% Similarity=0.339 Sum_probs=10.9
Q ss_pred CC-CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99-978999994999889999999
Q gi|254780693|r 188 GY-TSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 188 G~-t~~eIA~~L~iS~~TV~~hl~ 210 (235)
|. |.+|.|..+|||+.||..+.+
T Consensus 19 g~~sq~eLA~~lGvs~stis~~e~ 42 (189)
T 2fjr_A 19 GFSQKIQLANHFDIASSSLSNRYT 42 (189)
T ss_dssp TCSSHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 998799999997979999999982
No 210
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. RHA1, structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=73.76 E-value=2.4 Score=20.15 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=6.7
Q ss_pred CCHHHH--HHHHHHHCCCC
Q ss_conf 998999--99999987999
Q gi|254780693|r 174 LTERET--SCLQLAGDGYT 190 (235)
Q Consensus 174 LT~RE~--evL~l~a~G~t 190 (235)
+|+.|. +++.++-+|..
T Consensus 182 ~~~~~~~~~~~~~~l~Gl~ 200 (204)
T 2ibd_A 182 VTVDTVAKQYLSIVLDGLA 200 (204)
T ss_dssp SCHHHHHHHHHHHHHHCSB
T ss_pred CCHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999998827
No 211
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=73.51 E-value=3.9 Score=18.61 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHH-HHCCC----C----HHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 499899999999-98799----9----7899999499988999999999998079
Q gi|254780693|r 173 NLTERETSCLQL-AGDGY----T----SEEIAEKLGLSVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 173 ~LT~RE~evL~l-~a~G~----t----~~eIA~~L~iS~~TV~~hl~~i~~KLg~ 218 (235)
.+|+-+.++|+- ..... - -.+||..+|+++..|+.-..|.++|..-
T Consensus 8 rft~~q~~~Le~~f~~~~~~PYPs~~~~~~La~~~gL~~~qV~~WF~N~R~r~k~ 62 (83)
T 1le8_B 8 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKT 62 (83)
T ss_dssp CCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 7999999999999997489899699999999999788999988979998640054
No 212
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} SCOP: a.4.1.9 a.121.1.1 PDB: 3loc_A*
Probab=73.49 E-value=1.2 Score=22.28 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=12.9
Q ss_pred HCCHHHHCCHHHHHHH-HHHHHHHHCCCCE
Q ss_conf 2119862259999999-9999998583785
Q gi|254780693|r 5 TLTGKKSSSLQELSPR-LHLIQNRIKARNF 33 (235)
Q Consensus 5 ~~~~~~~~sl~dl~~~-l~~l~~~~~~~~f 33 (235)
.-++++.....+-... +.+..+.+.-.||
T Consensus 7 ~~~~rr~~~~~~~r~~Il~aA~~lf~~~G~ 36 (212)
T 1pb6_A 7 KTTGKRSRAVSAKKKAILSAALDTFSQFGF 36 (212)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999998666388999999999999998591
No 213
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=73.47 E-value=3.1 Score=19.28 Aligned_cols=18 Identities=39% Similarity=0.545 Sum_probs=5.9
Q ss_pred HHHHHHHCCCHHHHHHHH
Q ss_conf 899999499988999999
Q gi|254780693|r 192 EEIAEKLGLSVHTVNAYL 209 (235)
Q Consensus 192 ~eIA~~L~iS~~TV~~hl 209 (235)
.+||..|+||+.||...+
T Consensus 58 ~dIA~~L~vs~~sVs~~l 75 (155)
T 2h09_A 58 VDMAARLGVSQPTVAKML 75 (155)
T ss_dssp HHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
T ss_conf 999999698978999999
No 214
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=73.47 E-value=2.7 Score=19.68 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=30.2
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 9987999789999949998899999999999807997899999999769
Q gi|254780693|r 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~G 232 (235)
....|+|-+++|..+|||+.||..+.+.- .-.+-..+...|..+|
T Consensus 19 R~~~gltq~~lA~~~gvs~~~i~~~E~g~----~~ps~~~l~~la~~l~ 63 (77)
T 2b5a_A 19 RTQKGVSQEELADLAGLHRTYISEVERGD----RNISLINIHKICAALD 63 (77)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTC----SCCBHHHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 99819999999989796999999998799----8999999999999979
No 215
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=73.39 E-value=3.2 Score=19.24 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 499899999999987------9997899999499988999999999998079
Q gi|254780693|r 173 NLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 173 ~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~ 218 (235)
.+|+-+.++|.-.=+ ...-++||..||++++.|+.-..|-+.|+.=
T Consensus 26 ~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~~V~vWFQNrR~k~kk 77 (81)
T 1b8i_A 26 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKK 77 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCHHHHHHHHH
T ss_conf 6899999999999987799899999999999598988812423423677887
No 216
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=73.36 E-value=1.4 Score=21.85 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=17.9
Q ss_pred CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 978999994999889999999
Q gi|254780693|r 190 TSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 190 t~~eIA~~L~iS~~TV~~hl~ 210 (235)
+-+|+|..+|||++||...++
T Consensus 4 Nk~qlA~~fgVS~~TI~~W~~ 24 (68)
T 1j9i_A 4 NKKQLADIFGASIRTIQNWQE 24 (68)
T ss_dssp EHHHHHHHTTCCHHHHHHHTT
T ss_pred CHHHHHHHHCCCHHHHHHHHH
T ss_conf 899999997988899999998
No 217
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=73.29 E-value=2.1 Score=20.56 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 499899999999987999789999949998899999999
Q gi|254780693|r 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
.++|-+..-++ -..|+|-++.|..+|||..||..+=+.
T Consensus 10 ~~~p~~ik~~R-~~~gltQ~elA~~lgvs~~ti~~~E~G 47 (73)
T 3fmy_A 10 TVAPEFIVKVR-KKLSLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp CCCHHHHHHHH-HHTTCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred CCCHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 15999999999-985999999999989799999999979
No 218
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=72.68 E-value=3.3 Score=19.14 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 499899999999987------99978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.+|+.+.++|.-.=+ +..-+++|..||+++.+|+....|=+.|+
T Consensus 6 ~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~ 55 (58)
T 1ig7_A 6 PFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKA 55 (58)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 89999999999999867997999999999995969888669717468776
No 219
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=72.50 E-value=3 Score=19.38 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=23.2
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 987999789999949998899999999
Q gi|254780693|r 185 AGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 185 ~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
...|+|-++.|..+|||..||..+-+.
T Consensus 14 ~~~gltq~elA~~~Gis~~tis~~E~g 40 (99)
T 2l49_A 14 KSEYLSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp HHTTCCHHHHHHHHCCCHHHHHHHTTT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 993999999999969899999999879
No 220
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=72.47 E-value=3.3 Score=19.07 Aligned_cols=44 Identities=18% Similarity=0.157 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 499899999999987------99978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.+|+.+.++|.-.=+ ...-++||..||+++..|+....|=+.|+
T Consensus 7 ~ft~~Ql~~Le~~F~~~~yP~~~~r~~La~~l~l~~~qV~vWFqNrR~k~ 56 (60)
T 1jgg_A 7 AFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKD 56 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHCCCCCHHHHH
T ss_conf 89999999999999867998989999999990998326110374266787
No 221
>2cmp_A G1P, terminase small subunit; DNA packaging, DNA binding domain; 1.58A {Bacteriophage SF6}
Probab=72.40 E-value=3.2 Score=19.21 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 44499899999999-98799978999994999889999999999980
Q gi|254780693|r 171 ARNLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 171 ~~~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
...||++|...+.. +..|.+..+.|..-|-|+.|.+..-..++++=
T Consensus 6 ~~~LT~kQ~~F~~~yv~~~~n~t~Aa~~AGYs~~~a~~~as~Ll~~p 52 (63)
T 2cmp_A 6 EPKLSPKQERFIEEYFINDMNATKAAIAAGYSKNSASAIGAENLQKP 52 (63)
T ss_dssp --CCCHHHHHHHHHHHHTTTCHHHHHHHTTCCTTTHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHCCH
T ss_conf 53328999999999997699899999998488061999999997755
No 222
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=72.29 E-value=4.1 Score=18.41 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHH-HHHCCCC--------HHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 449989999999-9987999--------789999949998899999999999807
Q gi|254780693|r 172 RNLTERETSCLQ-LAGDGYT--------SEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 172 ~~LT~RE~evL~-l~a~G~t--------~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
..||+-+.++|+ |..+-.. -.+||..++++++-|+.-..|.++|+.
T Consensus 12 ~~~~~~~~~~L~~wf~~~~~nPyPs~~~~~~La~~~~l~~~qv~~WF~N~R~r~~ 66 (83)
T 2dmn_A 12 GNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRIL 66 (83)
T ss_dssp SSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999836489979999999999988199997897899999863
No 223
>2qtq_A Transcriptional regulator, TETR family; YP_496351.1, predicted DNA-binding transcriptional regulator; HET: MSE; 1.85A {Novosphingobium aromaticivorans DSM12444} PDB: 2rha_A*
Probab=72.25 E-value=2 Score=20.68 Aligned_cols=13 Identities=15% Similarity=0.289 Sum_probs=4.5
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+.+..+.+.-.||
T Consensus 22 l~aA~~lf~~~G~ 34 (213)
T 2qtq_A 22 LQTASNIMREGDV 34 (213)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999997393
No 224
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP- binding proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=72.17 E-value=3.7 Score=18.72 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=22.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 997899999499988999999999998
Q gi|254780693|r 189 YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 189 ~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.|-++||..+|+|+.||...+++..++
T Consensus 165 ~t~~~iA~~lg~sr~tvsr~l~~L~~~ 191 (207)
T 2oz6_A 165 ITRQEIGRIVGCSREMVGRVLKSLEEQ 191 (207)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 789999988799999999999999988
No 225
>3egq_A TETR family transcriptional regulator; NP_070644.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=71.72 E-value=4.2 Score=18.33 Aligned_cols=12 Identities=0% Similarity=-0.263 Sum_probs=4.4
Q ss_pred HHHHHHHCCCCE
Q ss_conf 999998583785
Q gi|254780693|r 22 HLIQNRIKARNF 33 (235)
Q Consensus 22 ~~l~~~~~~~~f 33 (235)
.+..+.+.-.||
T Consensus 11 ~aa~~l~~~~G~ 22 (170)
T 3egq_A 11 EAALRLYMKKPP 22 (170)
T ss_dssp HHHHHHHTTSCG
T ss_pred HHHHHHHHHHCC
T ss_conf 999999997492
No 226
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=71.49 E-value=3 Score=19.40 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=30.9
Q ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 99987999789999949998899999999999807997899999999769
Q gi|254780693|r 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 (235)
Q Consensus 183 ~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~G 232 (235)
.....|.|-+++|..+|||+.||..+.+... ..+-..+...|--+|
T Consensus 16 ~r~~~g~tq~~lA~~lgis~~~is~~e~G~~----~p~~~~l~~ia~~~~ 61 (73)
T 3omt_A 16 VLAEKGKTNLWLTETLDKNKTTVSKWCTNDV----QPSLETLFDIAEALN 61 (73)
T ss_dssp HHHHHTCCHHHHHHHTTCCHHHHHHHHTTSS----CCCHHHHHHHHHHHT
T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHCCCC----CCCHHHHHHHHHHHC
T ss_conf 9999399899999985998667899984988----998679999999989
No 227
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis nctc 9343}
Probab=71.37 E-value=3.5 Score=18.88 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=24.7
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99879997899999499988999999999
Q gi|254780693|r 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~iS~~TV~~hl~~i 212 (235)
....|.|-+++|..+|+|..||..+.+.-
T Consensus 19 r~~~gltq~~lA~~~gvs~~tis~~e~g~ 47 (76)
T 3bs3_A 19 LAEKQRTNRWLAEQMGKSENTISRWCSNK 47 (76)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTTS
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCC
T ss_conf 99909989999999888999999998599
No 228
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=71.35 E-value=3.3 Score=19.12 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=24.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999998799978999994999889999999
Q gi|254780693|r 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 179 ~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~ 210 (235)
..-++- ..|+|-++.|..+|||..||..+=+
T Consensus 35 ik~~R~-~~gltq~~lA~~lgvs~~ti~~~E~ 65 (99)
T 2ppx_A 35 IKIIRR-ALKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HHHHHH-HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 999999-9599999999996988999999988
No 229
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=71.35 E-value=4.3 Score=18.27 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=21.2
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 98799978999994999889999999
Q gi|254780693|r 185 AGDGYTSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 185 ~a~G~t~~eIA~~L~iS~~TV~~hl~ 210 (235)
...|+|-++.|..+|||..||..+-+
T Consensus 19 ~~~gltq~elA~~~gvs~~~vs~~E~ 44 (114)
T 3op9_A 19 KEHGLKNHQIAELLNVQTRTVAYYMS 44 (114)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHCCCCCHHHHHHC
T ss_conf 98599999997610887327999965
No 230
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=71.35 E-value=4.3 Score=18.27 Aligned_cols=45 Identities=11% Similarity=0.069 Sum_probs=31.6
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 9987999789999949998899999999999807997899999999769
Q gi|254780693|r 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~G 232 (235)
....|+|.+++|..+|||+.|+..+.+.- ...+...+...|-.+|
T Consensus 14 R~~~glsq~~la~~~gvs~~~i~~~e~g~----~~p~~~~l~~la~~l~ 58 (68)
T 2r1j_L 14 RKKLKIRQAALGKMVGVSNVAISQWERSE----TEPNGENLLALSKALQ 58 (68)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHTTS----SCCBHHHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHCCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 99859999999887399999999998799----8999999999999979
No 231
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=71.28 E-value=3.7 Score=18.76 Aligned_cols=47 Identities=23% Similarity=0.286 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 499899999999987------99978999994999889999999999980799
Q gi|254780693|r 173 NLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 (235)
Q Consensus 173 ~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~ 219 (235)
.+|+-+.++|.-.=. ...-++||..||+|+++|+.-..|-+.|+--.
T Consensus 5 ~FT~~Ql~~Le~~F~~n~~Ps~~~~~~LA~~lgls~~~V~~WFqNrR~k~kr~ 57 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 86999999999999866997999999999991989999358208888989987
No 232
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.40A {Rhodococcus SP}
Probab=71.06 E-value=3 Score=19.43 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=4.4
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999858378
Q gi|254780693|r 21 LHLIQNRIKARN 32 (235)
Q Consensus 21 l~~l~~~~~~~~ 32 (235)
+.+..+.+.-.|
T Consensus 20 l~aa~~l~~~~G 31 (203)
T 3f1b_A 20 LDAAVDVFSDRG 31 (203)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999739
No 233
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=71.04 E-value=4.4 Score=18.22 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=32.4
Q ss_pred CCCCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 4449989999999998-7999789999949998899999999
Q gi|254780693|r 171 ARNLTERETSCLQLAG-DGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 171 ~~~LT~RE~evL~l~a-~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
...||.-|+.-|..++ -|.|--|||+.+.-|.+-|+.|+++
T Consensus 3 ~~~L~~~e~aqlDVm~~L~~slhemaR~i~rSR~~ir~Yl~~ 44 (51)
T 1tc3_C 3 GSALSDTERAQLDVMKLLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp SCCCCHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 204307899988999994876999999998859999999569
No 234
>1utx_A CYLR2; DNA-binding protein, transcriptional repressor, regulation of cytolysin operon, helix-turn-helix; 1.90A {Enterococcus faecalis} SCOP: a.35.1.3 PDB: 2gzu_A
Probab=70.93 E-value=4.2 Score=18.36 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=32.1
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 9987999789999949998899999999999807997899999999769
Q gi|254780693|r 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~G 232 (235)
....|+|-++.|..+|||+.||..+-+.- .-.+-..+...|-.+|
T Consensus 10 R~~~g~tq~~lA~~~gis~~~is~~e~g~----~~ps~~~l~~ia~~l~ 54 (66)
T 1utx_A 10 REKKKISQSELAALLEVSRQTINGIEKNK----YNPSLQLALKIAYYLN 54 (66)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHTTS----CCCCHHHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHCCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 99849999999887299899999998799----8999999999999989
No 235
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=70.88 E-value=3.9 Score=18.58 Aligned_cols=43 Identities=12% Similarity=0.111 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 99899999999987------99978999994999889999999999980
Q gi|254780693|r 174 LTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 174 LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
+|+.+.++|.-.=. ...-+++|..||+|++.|+.-..|=+.|.
T Consensus 4 FT~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNrRak~ 52 (56)
T 3a03_A 4 FSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKW 52 (56)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 8999999999999707996999999999986698678679647778667
No 236
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, bacterial persistence, serine kinase, mercury derivative, SAD; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=70.77 E-value=4.4 Score=18.18 Aligned_cols=46 Identities=17% Similarity=0.305 Sum_probs=33.6
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 99879997899999499988999999999998079978999999997699
Q gi|254780693|r 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gl 233 (235)
-...|+|-++.|..+|||..||..+-+.. ...+-..+...|..+|+
T Consensus 21 R~~~glsq~~lA~~~gvs~~~is~~E~g~----~~ps~~~l~~ia~~lgv 66 (88)
T 2wiu_B 21 RQQNGWTQSELAKKIGIKQATISNFENNP----DNTTLTTFFKILQSLEL 66 (88)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHHCG----GGCBHHHHHHHHHHTTC
T ss_pred HHHCCCCHHHHHHHCCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHCC
T ss_conf 99859999999786399899999998799----99999999999999699
No 237
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=70.75 E-value=4.4 Score=18.18 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHH-HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 499899999999-98799978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQL-AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l-~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.++++-.++.+. +.+|++..++|..+|+|...|..-+++++.-+
T Consensus 18 ~~~~~t~~iAr~VLV~G~~~~evA~~~Glskq~V~~~V~rv~~~~ 62 (101)
T 2w7n_A 18 EVGQQTIEIARGVLVDGKPQATFATSLGLTRGAVSQAVHRVWAAF 62 (101)
T ss_dssp CCCHHHHHHHHHHHTTCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 521899999999984884099999996803889999999999998
No 238
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.53 E-value=4.1 Score=18.46 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 99899999999987------999789999949998899999999999807
Q gi|254780693|r 174 LTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 174 LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
+|+-+.++|.-.=+ ...-++||..||++++.|+.-..|-+.|+.
T Consensus 24 ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~qV~vWFqNrR~k~k 73 (80)
T 2dmt_A 24 FTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWK 73 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 89999999999998769999999999999978498884798398899998
No 239
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=70.34 E-value=3 Score=19.39 Aligned_cols=45 Identities=27% Similarity=0.218 Sum_probs=30.7
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 9987999789999949998899999999999807997899999999769
Q gi|254780693|r 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~G 232 (235)
.-..|+|-+++|..+|||+.||..+.+.- ...+-..+...|-.+|
T Consensus 18 r~~~~lsq~elA~~lgvs~~~is~~e~G~----~~ps~~~l~~la~~l~ 62 (94)
T 2kpj_A 18 IAKSEKTQLEIAKSIGVSPQTFNTWCKGI----AIPRMGKVQALADYFN 62 (94)
T ss_dssp HTTSSSCHHHHHHHHTCCHHHHHHHHTTS----CCCCHHHHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 99949989999998892883699997376----7999999999999989
No 240
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, PSI; 1.90A {Porphyromonas gingivalis W83} SCOP: a.4.5.4 b.82.3.2
Probab=70.34 E-value=4.2 Score=18.35 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99789999949998899999999999
Q gi|254780693|r 189 YTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 189 ~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
.|.++||..+|+|+.||+.-++...+
T Consensus 181 ~t~~~lA~~~G~sr~tvsr~l~~l~~ 206 (232)
T 2gau_A 181 LSREELATLSNMTVSNAIRTLSTFVS 206 (232)
T ss_dssp CCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 05999998879899999999999998
No 241
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=70.30 E-value=4.4 Score=18.21 Aligned_cols=29 Identities=38% Similarity=0.445 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 999789999949998899999999999807
Q gi|254780693|r 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 188 G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
..|.++||..+|+|..||...++.. ++-|
T Consensus 163 ~lt~~~lA~~lg~sr~tvsr~l~~L-~~~g 191 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSL-IKEG 191 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHH-HHTT
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHH-HHCC
T ss_conf 8469999999799899999999999-9889
No 242
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 1.70A {Rhodococcus SP}
Probab=70.29 E-value=3.3 Score=19.07 Aligned_cols=10 Identities=30% Similarity=0.112 Sum_probs=3.4
Q ss_pred HHHHHHHCCC
Q ss_conf 9999985837
Q gi|254780693|r 22 HLIQNRIKAR 31 (235)
Q Consensus 22 ~~l~~~~~~~ 31 (235)
.+..+.+.-.
T Consensus 17 ~aa~~l~~~~ 26 (194)
T 2nx4_A 17 AAAWRLIAAR 26 (194)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999975
No 243
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=70.21 E-value=3.6 Score=18.81 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 99899999999987------999789999949998899999999999807
Q gi|254780693|r 174 LTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 174 LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
+|+-+.++|.-.=+ -..-.+||..||++++.|+.-..|-+.|+-
T Consensus 29 ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~k 78 (84)
T 2kt0_A 29 FSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSK 78 (84)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 89999999999999879999899999999847987574686288888888
No 244
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=70.18 E-value=4.5 Score=18.14 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9997899999499988999999999998
Q gi|254780693|r 188 GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 188 G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
-.|..+||..+|+|+.||..-++...++
T Consensus 193 ~lt~~~LA~~lGisr~tvsR~L~~L~~~ 220 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVTRLLGDLREK 220 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 5259999888799999999999999978
No 245
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=70.17 E-value=2.8 Score=19.62 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=8.5
Q ss_pred CCCHHHHHHHHHHHCCC
Q ss_conf 49989999999998799
Q gi|254780693|r 173 NLTERETSCLQLAGDGY 189 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G~ 189 (235)
.+.++=.++++++..|+
T Consensus 190 ~~~~~~~~~v~~~l~Gl 206 (208)
T 3cwr_A 190 DIAPRVADAVRLIAPGR 206 (208)
T ss_dssp CCHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 99999999999983527
No 246
>2of7_A Putative TETR-family transcriptional regulator; APC7240, streptomyces coelicolor A3, structural genomics, PSI-2; 2.30A {Streptomyces coelicolor}
Probab=70.17 E-value=3.3 Score=19.11 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=6.3
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999987999
Q gi|254780693|r 179 TSCLQLAGDGYT 190 (235)
Q Consensus 179 ~evL~l~a~G~t 190 (235)
.+++.++..|..
T Consensus 218 ~~~~~~l~~gl~ 229 (260)
T 2of7_A 218 DRALDALENGLP 229 (260)
T ss_dssp HHHHHHHHHCCC
T ss_pred HHHHHHHHHHCC
T ss_conf 999999997652
No 247
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli CFT073} SCOP: a.35.1.3 PDB: 2icp_A
Probab=70.16 E-value=3.8 Score=18.70 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=30.4
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 9987999789999949998899999999999807997899999999769
Q gi|254780693|r 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~G 232 (235)
.-..|.|-.+.|..+|||..||..+.+.- -.-+...+.-.|-.+|
T Consensus 17 r~~~gltq~~lA~~lgvs~~~is~~e~G~----~~~s~~~~~~la~~lg 61 (94)
T 2ict_A 17 LDELNVSLREFARAMEIAPSTASRLLTGK----AALTPEMAIKLSVVIG 61 (94)
T ss_dssp HHHHTCCHHHHHHHHTCCHHHHHHHHHTS----SCCCHHHHHHHHHHTC
T ss_pred HHHCCCCHHHHHHHCCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 99969999999998496389986987276----4472999999999999
No 248
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=70.05 E-value=4.6 Score=18.08 Aligned_cols=45 Identities=13% Similarity=0.183 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHH-HHCCCC--------HHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 499899999999-987999--------789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQL-AGDGYT--------SEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l-~a~G~t--------~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.+|+.+.++|.- ...... -.+||..+|+|+..|+.-..|.++|..
T Consensus 33 rft~~q~~~Le~~f~~~~~nPYPs~~~~~~La~~~gL~~~qV~~WF~N~R~r~K 86 (87)
T 1mnm_C 33 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCC
T ss_conf 899999999999999858889959999999999978499999897886014447
No 249
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription factor, alternative splicing, developmental protein; 2.6A {Mus musculus}
Probab=70.02 E-value=3.8 Score=18.69 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 99899999999987------99978999994999889999999999980
Q gi|254780693|r 174 LTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 174 LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
+|+-+.++|.-.=+ ...-++||..||+|++.|+....|=+.|.
T Consensus 10 ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~lgl~~~qV~~WFqNrR~k~ 58 (62)
T 2vi6_A 10 FSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKC 58 (62)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHH
T ss_conf 8999999999999877999989999999991988778232255577778
No 250
>2zcm_A Biofilm operon icaabcd HTH-type negative transcriptional regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis RP62A} PDB: 2zcn_A
Probab=69.82 E-value=3.4 Score=19.05 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=4.5
Q ss_pred CCHHHHHHHHCC
Q ss_conf 997899999499
Q gi|254780693|r 189 YTSEEIAEKLGL 200 (235)
Q Consensus 189 ~t~~eIA~~L~i 200 (235)
............
T Consensus 159 ~~~~~~~~~~~~ 170 (192)
T 2zcm_A 159 YFRASFSQKFGI 170 (192)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHCCCCCC
T ss_conf 999975576666
No 251
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein structure initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=69.73 E-value=2.3 Score=20.26 Aligned_cols=15 Identities=13% Similarity=-0.079 Sum_probs=6.8
Q ss_pred HHCCCHHHHHHHHHH
Q ss_conf 949998899999999
Q gi|254780693|r 197 KLGLSVHTVNAYLGS 211 (235)
Q Consensus 197 ~L~iS~~TV~~hl~~ 211 (235)
..+.+..+....+.-
T Consensus 176 ~~~~~~e~l~~~~~~ 190 (202)
T 2i10_A 176 ASGAPREELTAAAIL 190 (202)
T ss_dssp HTTCCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHH
T ss_conf 629499999999999
No 252
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structure initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=69.70 E-value=1.3 Score=22.04 Aligned_cols=14 Identities=14% Similarity=-0.064 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 88999999999998
Q gi|254780693|r 202 VHTVNAYLGSATVK 215 (235)
Q Consensus 202 ~~TV~~hl~~i~~K 215 (235)
+.+++..+..+...
T Consensus 189 ~~~l~~ll~Gl~~~ 202 (213)
T 2g7g_A 189 ELGLAALLAGFHHL 202 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999998
No 253
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=69.55 E-value=4.7 Score=18.01 Aligned_cols=46 Identities=24% Similarity=0.293 Sum_probs=33.4
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 9879997899999499988999999999998079978999999997699
Q gi|254780693|r 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 (235)
Q Consensus 185 ~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gl 233 (235)
-..|.|-.|+|..+|||+.||....+. |..-.+-..+...|-.+|+
T Consensus 28 ~~~glTQ~elA~~~gvs~~~is~iE~G---~~~~~s~~~L~~ia~aLg~ 73 (83)
T 2a6c_A 28 RNSGLTQFKAAELLGVTQPRVSDLMRG---KIDLFSLESLIDMITSIGL 73 (83)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHTT---CGGGCCHHHHHHHHHHTTC
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCCHHHHHHHHHHHCC
T ss_conf 995999999999987789999999879---9999899999999999299
No 254
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.54 E-value=4.7 Score=18.00 Aligned_cols=46 Identities=15% Similarity=0.205 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHH-HCCC-----CHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 44998999999999-8799-----9789999949998899999999999807
Q gi|254780693|r 172 RNLTERETSCLQLA-GDGY-----TSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 172 ~~LT~RE~evL~l~-a~G~-----t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
..+|+.+.++|+-. .... .-.+||.+|+++++.|+.-.+|-+.|+-
T Consensus 13 ~~~t~~Ql~~Le~~f~~~~~P~~~~~~~LA~~~gl~~~~V~~WF~nrR~~~k 64 (76)
T 2dn0_A 13 NKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCR 64 (76)
T ss_dssp CCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 9899999999999999868999999999999949799999998998899886
No 255
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=69.49 E-value=3.5 Score=18.95 Aligned_cols=13 Identities=8% Similarity=0.118 Sum_probs=5.3
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+.+..+.+.-.||
T Consensus 17 l~aA~~l~~~~G~ 29 (210)
T 2wui_A 17 LDAAERVFLEKGV 29 (210)
T ss_dssp HHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999997591
No 256
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=69.41 E-value=4.3 Score=18.29 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 499899999999987------999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.+|+.+.++|.-.=. ...-++||..||++++.|+.-..|-+.|..
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yPs~~~r~~LA~~lgl~~~qV~~WFqNrR~k~k 58 (68)
T 1ftt_A 8 LFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMK 58 (68)
T ss_dssp SCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHEECCCHHHHHHHH
T ss_conf 899999999999998679979999999999819887880002565888988
No 257
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=69.37 E-value=4.7 Score=17.98 Aligned_cols=26 Identities=19% Similarity=0.194 Sum_probs=22.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99789999949998899999999999
Q gi|254780693|r 189 YTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 189 ~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
.|.++||..+|+|..||..-++...+
T Consensus 176 lt~~~iA~~lg~sr~tvsR~l~~l~~ 201 (231)
T 3e97_A 176 LGTQDIMARTSSSRETVSRVLKRLEA 201 (231)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 69999998869989999999999997
No 258
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.37 E-value=4.5 Score=18.17 Aligned_cols=44 Identities=14% Similarity=0.227 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHH-CC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 49989999999998-79-----9978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLAG-DG-----YTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~a-~G-----~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.+|+-+.++|+-.= .. ..-.+||..|+++++.|+.-.+|-+.|.
T Consensus 13 ~~t~~Q~~~Le~~F~~~~~P~~~~~~~La~~l~l~~~qV~~WFqNrR~k~ 62 (80)
T 2dmq_A 13 SFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKF 62 (80)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999876997999999999996959999689769889999
No 259
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding protein, helix-turn-helix, phosphotransferase system, metalloprotein; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=69.31 E-value=4.7 Score=17.97 Aligned_cols=17 Identities=12% Similarity=0.161 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999999999998583
Q gi|254780693|r 14 LQELSPRLHLIQNRIKA 30 (235)
Q Consensus 14 l~dl~~~l~~l~~~~~~ 30 (235)
++.+...+..+....+.
T Consensus 125 l~~i~~~i~~~~~~~~~ 141 (406)
T 1z6r_A 125 LDRIISHIDQFFIRHQK 141 (406)
T ss_dssp HHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 99999999999996577
No 260
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=69.29 E-value=4.4 Score=18.20 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.9
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9987999789999949998899999999
Q gi|254780693|r 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
....|+|.++.|..+|||+.|+..+.+.
T Consensus 10 R~~~gltq~elA~~~gis~~~~~~~e~g 37 (69)
T 1r69_A 10 RIQLGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp HHHTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHCCCCHHHHHHHHCC
T ss_conf 9994999999988639899999999869
No 261
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=69.28 E-value=4.5 Score=18.15 Aligned_cols=43 Identities=12% Similarity=0.120 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 99899999999987------99978999994999889999999999980
Q gi|254780693|r 174 LTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 174 LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
+|+-+.++|.-.=. ...-.+||..+|+|+..|+.-..|-+.|+
T Consensus 11 ~T~eQl~~Le~~F~~~~yP~~~~~~~LA~~lgls~~qV~~WFqNrR~r~ 59 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRC 59 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999999982899899999999998899999899899999986
No 262
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Bacillus cereus atcc 14579} SCOP: a.4.1.17
Probab=69.27 E-value=4.3 Score=18.31 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHHC----------CCCHHHHHHHHCCCHHHHHHHH
Q ss_conf 499899999999987----------9997899999499988999999
Q gi|254780693|r 173 NLTERETSCLQLAGD----------GYTSEEIAEKLGLSVHTVNAYL 209 (235)
Q Consensus 173 ~LT~RE~evL~l~a~----------G~t~~eIA~~L~iS~~TV~~hl 209 (235)
.||..+++...+++. -+|-++||.++|||..|...-.
T Consensus 23 ~Lt~qQr~AA~llv~nEi~~~n~g~k~T~~eiAeEvGvsr~TLy~Wk 69 (155)
T 2ao9_A 23 KLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWR 69 (155)
T ss_dssp TSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 86099999999999875434677336479999999574699999886
No 263
>2o7t_A Transcriptional regulator; NP_600854.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=69.22 E-value=3 Score=19.39 Aligned_cols=13 Identities=8% Similarity=0.107 Sum_probs=5.0
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+.+..+.+...||
T Consensus 14 l~aa~~l~~~~G~ 26 (199)
T 2o7t_A 14 ITTTCNLYRTHHH 26 (199)
T ss_dssp HHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999997491
No 264
>2id3_A Putative transcriptional regulator; structural genomics, PSI-2, prote structure initiative; 1.70A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=69.13 E-value=2 Score=20.70 Aligned_cols=10 Identities=40% Similarity=0.411 Sum_probs=4.0
Q ss_pred HHHHHHHCCC
Q ss_conf 9999997699
Q gi|254780693|r 224 AIAKAIRFGY 233 (235)
Q Consensus 224 ava~A~~~Gl 233 (235)
.+..+++-|+
T Consensus 212 ~v~~~~~agl 221 (225)
T 2id3_A 212 AASTAARAGV 221 (225)
T ss_dssp HHHHHHHTTT
T ss_pred HHHHHHHHHH
T ss_conf 9999998761
No 265
>1t33_A Putative transcriptional repressor (TETR/ACRR family); structural genomics, TETR/CCRR family, helix turn helix DNA binding domain; 2.20A {Salmonella typhimurium LT2} SCOP: a.4.1.9 a.121.1.1
Probab=69.07 E-value=2.1 Score=20.47 Aligned_cols=13 Identities=0% Similarity=0.005 Sum_probs=5.3
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+.+..+.+.-.||
T Consensus 18 l~aA~~lf~~~G~ 30 (224)
T 1t33_A 18 IAAALAQFGEYGL 30 (224)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHCH
T ss_conf 9999999998792
No 266
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription/DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=69.05 E-value=4.8 Score=17.94 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 499899999999987------9997899999499988999999999998079978
Q gi|254780693|r 173 NLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 (235)
Q Consensus 173 ~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR 221 (235)
.+|+-+.++|.-.=. ...-.+||..||+++++|+.-..|-+++..-+-+
T Consensus 103 ~~t~~q~~~L~~~f~~~~~P~~~~~~~la~~l~l~~~~V~~WF~N~R~r~~~~~~ 157 (164)
T 2d5v_A 103 VFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred ECCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 2789999999999872799899999999999692989999989975166145678
No 267
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.83 E-value=4.6 Score=18.08 Aligned_cols=44 Identities=20% Similarity=0.207 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 499899999999987------99978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.+|+.|.++|.-.=+ ...-.+||..||+++..|+.-.+|-+.|.
T Consensus 13 ~ft~~Ql~~Le~~F~~~~yP~~~~~~~LA~~l~l~~~~V~~WFqNrR~k~ 62 (70)
T 2dmu_A 13 IFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKW 62 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999987999989999999995989899478427626766
No 268
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=68.71 E-value=3.7 Score=18.75 Aligned_cols=13 Identities=8% Similarity=0.222 Sum_probs=4.9
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+.+..+.+.-.||
T Consensus 23 l~aA~~l~~~~G~ 35 (206)
T 3kz9_A 23 MEIALEVFARRGI 35 (206)
T ss_dssp HHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999997294
No 269
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=68.49 E-value=4.9 Score=17.86 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=23.4
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9987999789999949998899999999
Q gi|254780693|r 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
....|+|-+++|..+|+|..||..+.+.
T Consensus 21 R~~~gltq~elA~~lgvs~~~is~~E~G 48 (80)
T 3kz3_A 21 KNELGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HHHHTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 9993999999966209889889999879
No 270
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=68.46 E-value=4.7 Score=17.99 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 499899999999987------99978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.+|+-+.++|.-.=. ...-++||..||+++++|+.-..|-+.|.
T Consensus 9 ~ft~~Ql~~Le~~F~~~~yP~~~~r~~La~~l~l~~~~V~vWFqNrR~k~ 58 (63)
T 2h1k_A 9 AYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKW 58 (63)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999877998999999999993979789467308776688
No 271
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=68.41 E-value=3.3 Score=19.11 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=22.4
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 97899999499988999999999998
Q gi|254780693|r 190 TSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 190 t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
|..+||..+|+|..||...++...++
T Consensus 180 t~~~iA~~lgisr~tvsR~l~~L~~~ 205 (237)
T 3fx3_A 180 DKMLIAGRLGMKPESLSRAFSRLKAA 205 (237)
T ss_dssp CTHHHHHHTTCCHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999988699899999999999979
No 272
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=68.41 E-value=3.9 Score=18.62 Aligned_cols=15 Identities=0% Similarity=-0.190 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 889999999999980
Q gi|254780693|r 202 VHTVNAYLGSATVKL 216 (235)
Q Consensus 202 ~~TV~~hl~~i~~KL 216 (235)
+..+...+.-+...+
T Consensus 178 ~~~~~~~~~~ll~gl 192 (215)
T 1ui5_A 178 PRRLAEMWYILIRGM 192 (215)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999766
No 273
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=68.37 E-value=3.8 Score=18.68 Aligned_cols=18 Identities=0% Similarity=-0.160 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHCCCCE
Q ss_conf 999999999998583785
Q gi|254780693|r 16 ELSPRLHLIQNRIKARNF 33 (235)
Q Consensus 16 dl~~~l~~l~~~~~~~~f 33 (235)
.+......+-...++.++
T Consensus 14 ~Il~aa~~l~~~~G~~~~ 31 (197)
T 2f07_A 14 KILQAAIEVISEKGLDKA 31 (197)
T ss_dssp HHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHHHHCCCCC
T ss_conf 999999999997391407
No 274
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=68.26 E-value=3.8 Score=18.65 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=5.2
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
|.+..+.+...||
T Consensus 41 L~AA~~l~~~~G~ 53 (221)
T 3g7r_A 41 LGTATRIFYAEGI 53 (221)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998291
No 275
>3knw_A Putative transcriptional regulator (TETR/ACRR family); TETR-like protein, MCSG, PSI, structural genomics, protein structure initiative; 2.45A {Acinetobacter SP}
Probab=68.18 E-value=3.9 Score=18.56 Aligned_cols=13 Identities=15% Similarity=0.123 Sum_probs=5.2
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+.+..+.+...||
T Consensus 20 l~aa~~l~~~~G~ 32 (212)
T 3knw_A 20 LDSGFHLVLRKGF 32 (212)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999997194
No 276
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=68.17 E-value=4.9 Score=17.87 Aligned_cols=45 Identities=16% Similarity=0.243 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 4499899999999987------99978999994999889999999999980
Q gi|254780693|r 172 RNLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
..||+.+.++|.-.=. ...-.+||..||+|++.|+.-..|-+.|.
T Consensus 10 t~~s~~q~~~Le~~F~~~~yP~~~~~~~LA~~~gl~~~qV~~WF~NrR~r~ 60 (61)
T 1akh_A 10 SSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 60 (61)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
T ss_conf 889999999999999886999999999999997869888248304004256
No 277
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=68.09 E-value=3.9 Score=18.62 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=17.9
Q ss_pred CCHHHHHHHHC-----CCHHHHHHHHHH
Q ss_conf 99789999949-----998899999999
Q gi|254780693|r 189 YTSEEIAEKLG-----LSVHTVNAYLGS 211 (235)
Q Consensus 189 ~t~~eIA~~L~-----iS~~TV~~hl~~ 211 (235)
+|+.+|+..|. ||.|||-.|...
T Consensus 38 lSD~~i~~~L~~~Gi~IaRRTVaKYR~~ 65 (76)
T 2ahq_A 38 YSDQEIANILKEKGFKVARRTVAKYREM 65 (76)
T ss_dssp CCHHHHHHHHTTTSSCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_conf 7699999999986995531619999998
No 278
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional activator, human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=68.02 E-value=5 Score=17.79 Aligned_cols=44 Identities=20% Similarity=0.149 Sum_probs=29.3
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 987999789999949998899999999999807997899999999769
Q gi|254780693|r 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 (235)
Q Consensus 185 ~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~G 232 (235)
...|+|-+++|..+|||..||..+.+... ..+...+..+|-.+|
T Consensus 38 ~~~glSq~~lA~~~gis~~~ls~~E~g~~----~ps~~~l~~ia~~l~ 81 (117)
T 3f52_A 38 ADKGVTLRELAEASRVSPGYLSELERGRK----EVSSELLASVCHALG 81 (117)
T ss_dssp HHHTCCHHHHHHHTTSCHHHHHHHHTTSS----CCCHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHC
T ss_conf 98199999999885333999999986998----999999999999989
No 279
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=68.02 E-value=4.5 Score=18.11 Aligned_cols=45 Identities=22% Similarity=0.283 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHC--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 499899999999987--99----9789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAGD--GY----TSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a~--G~----t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.+|+.+.++|.-.=. -+ .-.+||..|+++++.|+.-..|.+.|+-
T Consensus 13 ~ft~~q~~~Le~~F~~~~~P~~~~~~~La~~~~l~~~qV~~WF~N~R~r~k 63 (70)
T 2da2_A 13 RFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKAR 63 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 899999999999999869989999999999949598893783297788874
No 280
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG; HET: MSE; 1.54A {Mesorhizobium loti MAFF303099}
Probab=67.92 E-value=2.6 Score=19.83 Aligned_cols=13 Identities=0% Similarity=0.240 Sum_probs=4.5
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+++..+.+.-.||
T Consensus 18 l~aa~~lf~~~G~ 30 (211)
T 3bhq_A 18 IQAATAAFISKGY 30 (211)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998591
No 281
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=67.88 E-value=4.8 Score=17.95 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 499899999999987------999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.+|+-+.++|.-.=+ ...-.+||..||++++.|+.-..|-+.|.-
T Consensus 34 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~lgl~~~~V~vWFQNrRak~k 84 (88)
T 2r5y_A 34 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWK 84 (88)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCEEEHHHHHHHHHH
T ss_conf 889999999999980179998799999999978791335101243677877
No 282
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=67.84 E-value=3.8 Score=18.65 Aligned_cols=11 Identities=0% Similarity=-0.173 Sum_probs=3.6
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999858378
Q gi|254780693|r 22 HLIQNRIKARN 32 (235)
Q Consensus 22 ~~l~~~~~~~~ 32 (235)
.+..+.+...|
T Consensus 14 ~AA~~lf~e~G 24 (213)
T 3ni7_A 14 DTAVELAAHTS 24 (213)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHHC
T ss_conf 99999999869
No 283
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, protein structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=67.83 E-value=2.2 Score=20.37 Aligned_cols=14 Identities=7% Similarity=0.159 Sum_probs=6.1
Q ss_pred HHHHHHHHHCCCCE
Q ss_conf 99999998583785
Q gi|254780693|r 20 RLHLIQNRIKARNF 33 (235)
Q Consensus 20 ~l~~l~~~~~~~~f 33 (235)
.+.+..+.+.-.||
T Consensus 44 Il~AA~~l~~e~G~ 57 (214)
T 2guh_A 44 IVDAAGRAFATRPY 57 (214)
T ss_dssp HHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999998392
No 284
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=67.81 E-value=4.8 Score=17.91 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 4998999999999879------9978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLAGDG------YTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.+|+-+.++|.-.=+= ..-.+||..||||++.|+.-..|-+.|.
T Consensus 8 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~~WFQNRR~k~ 57 (68)
T 1zq3_P 8 TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRH 57 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999866998999999999997997568778525488888
No 285
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=67.68 E-value=4.8 Score=17.91 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 499899999999987------99978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.+|+-+.++|.-.=+ ...-.+||..||++++.|+.-..|-+.|.
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 62 (70)
T 2e1o_A 13 RFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKW 62 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 68999999999999985999999999999995989889568507666898
No 286
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.61 E-value=4.1 Score=18.42 Aligned_cols=45 Identities=20% Similarity=0.226 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999879------99789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAGDG------YTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.+|+-+.++|.-.=+= ..-++||..||++++.|+.-..|-+.|..
T Consensus 13 ~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 63 (70)
T 2djn_A 13 IYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIK 63 (70)
T ss_dssp SSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 899999999999999869989999999999978786674674340265761
No 287
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=67.56 E-value=3.5 Score=18.94 Aligned_cols=13 Identities=0% Similarity=0.051 Sum_probs=4.8
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+.+..+.+.-.||
T Consensus 22 l~aA~~l~~~~G~ 34 (199)
T 2rek_A 22 IEAAAAEVARHGA 34 (199)
T ss_dssp HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998697
No 288
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=67.51 E-value=5.1 Score=17.77 Aligned_cols=44 Identities=11% Similarity=0.277 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 499899999999987------99978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.+|+.+.++|.-.=+ ...-++||..||++++.|+.-..|-+.|.
T Consensus 9 ~ft~~Ql~~Le~~F~~n~~Ps~~~r~~LA~~lgl~~~~V~~WFqNrR~k~ 58 (61)
T 2hdd_A 9 AFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKI 58 (61)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHH
T ss_conf 89999999999999867997999999999997968788023055456476
No 289
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=67.51 E-value=4.1 Score=18.41 Aligned_cols=21 Identities=10% Similarity=0.097 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHHHHCCCCE
Q ss_conf 599999999999998583785
Q gi|254780693|r 13 SLQELSPRLHLIQNRIKARNF 33 (235)
Q Consensus 13 sl~dl~~~l~~l~~~~~~~~f 33 (235)
+.+.-...+.+..+.+.-.||
T Consensus 12 ~~~tr~~Il~aA~~lf~~~G~ 32 (220)
T 3lhq_A 12 ALETRQHILDVALRLFSQQGV 32 (220)
T ss_dssp SHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999997491
No 290
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.51 E-value=5.1 Score=17.72 Aligned_cols=47 Identities=15% Similarity=0.216 Sum_probs=37.9
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC
Q ss_conf 87444998999999999879997899999499988999999999998079
Q gi|254780693|r 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 169 ~~~~~LT~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~ 218 (235)
.....+|.-+.+..+-+...+.++++ ||+-+..-+..+..+|+||.|
T Consensus 7 gssasftkeqadairrirnskdswdm---lgvkpgasrdevnkayrklav 53 (90)
T 2ys8_A 7 GSSASFTKEQADAIRRIRNSKDSWDM---LGVKPGASRDEVNKAYRKLAV 53 (90)
T ss_dssp CCCCCCCHHHHHHHHHHHTCSSHHHH---HTCCTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCHHH---HCCCCCCCHHHHHHHHHHHHH
T ss_conf 87521109888999998715411887---477888568899999998887
No 291
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=67.37 E-value=5.2 Score=17.70 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 78999994999889999999999980
Q gi|254780693|r 191 SEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 191 ~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
-.+||..||++++.|+.-..|-+.|.
T Consensus 117 r~~lA~~~~l~~~~V~~WFqNrR~k~ 142 (146)
T 1au7_A 117 IMRMAEELNLEKEVVRVWFCNRRQRE 142 (146)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999997829899758438776646
No 292
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=67.34 E-value=4.7 Score=17.98 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=25.5
Q ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99987999789999949998899999999
Q gi|254780693|r 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 183 ~l~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
.....|+|-+|+|..+|||+.||..+-+.
T Consensus 11 ~r~~~gltq~elA~~~gis~~~is~~e~g 39 (71)
T 1zug_A 11 RRIALKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp HHHHTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHCCCCHHHHHHHCCCCHHHHHHHHCC
T ss_conf 99993999999978419899999999879
No 293
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=67.26 E-value=3.8 Score=18.70 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.2
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 98799978999994999889999999
Q gi|254780693|r 185 AGDGYTSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 185 ~a~G~t~~eIA~~L~iS~~TV~~hl~ 210 (235)
++.|+|-++.|..+|||..||..+-+
T Consensus 46 ~~kglTQ~eLA~~lgvs~~~is~~E~ 71 (107)
T 2jvl_A 46 FEPTMTQAELGKEIGETAATVASYER 71 (107)
T ss_dssp SSSCCCHHHHHHHHTCCHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 88699899999998878999999985
No 294
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=67.11 E-value=5.2 Score=17.67 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHHHC--CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 499899999999987--9997899999499988999999999998
Q gi|254780693|r 173 NLTERETSCLQLAGD--GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 173 ~LT~RE~evL~l~a~--G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
+||..|..||..+.+ |.|..+||..|+++..||...++++-+|
T Consensus 26 glt~~q~~vL~~l~~~~~~t~~~La~~l~i~~~~vs~~v~~L~~~ 70 (144)
T 1lj9_A 26 SLTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQ 70 (144)
T ss_dssp TCTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 989999999999984899799999999897888999999999968
No 295
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=66.87 E-value=3.6 Score=18.84 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 9999999999980799
Q gi|254780693|r 204 TVNAYLGSATVKLDAV 219 (235)
Q Consensus 204 TV~~hl~~i~~KLg~~ 219 (235)
.++.++..+.+=+|+.
T Consensus 179 ~l~~~l~~~l~~~~~~ 194 (203)
T 2np5_A 179 ALDIQIGMILQGADVV 194 (203)
T ss_dssp HHHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 9999999996387899
No 296
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=66.86 E-value=1.2 Score=22.14 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=3.8
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999858378
Q gi|254780693|r 22 HLIQNRIKARN 32 (235)
Q Consensus 22 ~~l~~~~~~~~ 32 (235)
.+..+.+.-.|
T Consensus 23 ~aA~~l~~~~G 33 (216)
T 2oi8_A 23 DHAWEQIATAG 33 (216)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHCC
T ss_conf 99999999709
No 297
>1t56_A EThr repressor; helix-turn-helix, TETR family, dimer, transcription; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: a.4.1.9 a.121.1.1 PDB: 3g1m_A* 1u9n_A* 1u9o_A*
Probab=66.83 E-value=3.6 Score=18.84 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=6.9
Q ss_pred HHHHHHHHHCCCCE
Q ss_conf 99999998583785
Q gi|254780693|r 20 RLHLIQNRIKARNF 33 (235)
Q Consensus 20 ~l~~l~~~~~~~~f 33 (235)
.+.+..+.+.-.||
T Consensus 29 Il~aA~~l~~~~G~ 42 (216)
T 1t56_A 29 ILATAENLLEDRPL 42 (216)
T ss_dssp HHHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999997092
No 298
>3crj_A Transcription regulator; APC88200, TETR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=66.78 E-value=2.7 Score=19.76 Aligned_cols=13 Identities=0% Similarity=0.304 Sum_probs=4.6
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+.+..+.+.-.||
T Consensus 20 l~aA~~lf~~~G~ 32 (199)
T 3crj_A 20 MQATYRALREHGY 32 (199)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999997490
No 299
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=66.73 E-value=5.3 Score=17.62 Aligned_cols=31 Identities=16% Similarity=0.080 Sum_probs=24.2
Q ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9999987999789999949998899999999
Q gi|254780693|r 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 181 vL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
.-.|-..|.--.+.|+.||||.+|....+++
T Consensus 47 ~~aL~~~~GN~s~AAr~LGIsR~TLyrklkk 77 (81)
T 1umq_A 47 QRIYEMCDRNVSETARRLNMHRRTLQRILAK 77 (81)
T ss_dssp HHHHHHTTSCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999997277999999979899999999997
No 300
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=66.72 E-value=5.2 Score=17.69 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHH-HHC-CC-----CHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4499899999999-987-99-----9789999949998899999999999807
Q gi|254780693|r 172 RNLTERETSCLQL-AGD-GY-----TSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 172 ~~LT~RE~evL~l-~a~-G~-----t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
..+|+-+.++|+- ..+ .. .-.+||..||++++.|+.-..|-+.|+-
T Consensus 12 ~~~t~~q~~~Le~~F~~~n~~P~~~~~~~LA~~lgl~~~qV~~WF~NrR~k~k 64 (71)
T 1wi3_A 12 TKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 86999999999999998479959999999999959998996784087676541
No 301
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus dk 1622}
Probab=66.68 E-value=2.3 Score=20.17 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=8.9
Q ss_pred CHHHHHHHHCCCHHHHHHHH
Q ss_conf 97899999499988999999
Q gi|254780693|r 190 TSEEIAEKLGLSVHTVNAYL 209 (235)
Q Consensus 190 t~~eIA~~L~iS~~TV~~hl 209 (235)
+..|+|..+|||++|+++|-
T Consensus 7 ~I~eva~~~gvs~~tlR~ye 26 (81)
T 2jml_A 7 RIRTIARMTGIREATLRAWE 26 (81)
T ss_dssp EHHHHHHTTSTTHHHHHHHH
T ss_pred EHHHHHHHHCCCHHHHHHHH
T ss_conf 59999999885999999999
No 302
>3bjb_A Probable transcriptional regulator, TETR family protein; APC7331, rhodococcus SP. RHA1, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodococcus SP}
Probab=66.61 E-value=3.6 Score=18.79 Aligned_cols=16 Identities=6% Similarity=-0.120 Sum_probs=8.8
Q ss_pred HHHHHHHHHHCCCCHH
Q ss_conf 9999999998799978
Q gi|254780693|r 177 RETSCLQLAGDGYTSE 192 (235)
Q Consensus 177 RE~evL~l~a~G~t~~ 192 (235)
+=.+++.++..|.+++
T Consensus 190 ~~~~~~~~ll~~l~~r 205 (207)
T 3bjb_A 190 DIRRACDLLLVNLSHR 205 (207)
T ss_dssp HHHHHHHHHTTTCC--
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999999998506457
No 303
>2zdb_A Transcriptional regulator, CRP family; CAMP-binding domain, winged helix-turn-helix, thermus thermophilus DNA-binding, plasmid; 2.00A {Thermus thermophilus}
Probab=66.54 E-value=5.1 Score=17.73 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=23.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99789999949998899999999999
Q gi|254780693|r 189 YTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 189 ~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
.|..+||..||+|..||..-++...+
T Consensus 140 lt~~~lA~~lg~sr~tvsR~l~~L~~ 165 (195)
T 2zdb_A 140 VSHEEIADATASIRESVSKVLADLRR 165 (195)
T ss_dssp CCHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 87999998879979999999999998
No 304
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=66.44 E-value=3.7 Score=18.75 Aligned_cols=13 Identities=8% Similarity=-0.051 Sum_probs=4.6
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 9988999999999
Q gi|254780693|r 200 LSVHTVNAYLGSA 212 (235)
Q Consensus 200 iS~~TV~~hl~~i 212 (235)
.++..+...+..+
T Consensus 184 ~~~e~~~~~~~~~ 196 (217)
T 3hta_A 184 YDEEYAREVLTRL 196 (217)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 9999999999999
No 305
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=66.44 E-value=4.5 Score=18.11 Aligned_cols=17 Identities=6% Similarity=0.051 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHCCCCE
Q ss_conf 99999999998583785
Q gi|254780693|r 17 LSPRLHLIQNRIKARNF 33 (235)
Q Consensus 17 l~~~l~~l~~~~~~~~f 33 (235)
....+.+..+.+.-.||
T Consensus 26 r~~Il~aA~~l~~~~G~ 42 (214)
T 2oer_A 26 VASILEAAVQVLASEGA 42 (214)
T ss_dssp HHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999997494
No 306
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=66.40 E-value=4.7 Score=18.00 Aligned_cols=30 Identities=7% Similarity=0.126 Sum_probs=25.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 789999949998899999999999807997
Q gi|254780693|r 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 (235)
Q Consensus 191 ~~eIA~~L~iS~~TV~~hl~~i~~KLg~~n 220 (235)
-+++|..||++++.|+....|-+.|....+
T Consensus 41 ~~~LA~~~gl~~~~V~~WFqNrR~k~k~~~ 70 (89)
T 2ecb_A 41 LNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 999999988199999980899988777652
No 307
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=66.28 E-value=4.9 Score=17.85 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 499899999999987------999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.+|+-+.++|.-.=+ ...-.+||..|+++++.|+.-..|-+.|+-
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 63 (70)
T 2cra_A 13 PYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEK 63 (70)
T ss_dssp CSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 899999999999999869999999999999909998882586487778886
No 308
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structure initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=66.16 E-value=4.6 Score=18.10 Aligned_cols=19 Identities=11% Similarity=0.200 Sum_probs=8.2
Q ss_pred HCCCHHHHHHHHHHHHHHC
Q ss_conf 4999889999999999980
Q gi|254780693|r 198 LGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 198 L~iS~~TV~~hl~~i~~KL 216 (235)
+.-++...+..++-..+-|
T Consensus 198 ~~~~~~~l~~~~~~~~~~l 216 (222)
T 3bru_A 198 LELRPDPLHSFTRTFGRHF 216 (222)
T ss_dssp HHTSSHHHHHHHHHHGGGC
T ss_pred HHCCHHHHHHHHHHHHHHH
T ss_conf 8398389999999999999
No 309
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=66.13 E-value=3.8 Score=18.68 Aligned_cols=12 Identities=17% Similarity=-0.017 Sum_probs=4.2
Q ss_pred CCHHHHHHHHHH
Q ss_conf 998999999999
Q gi|254780693|r 174 LTERETSCLQLA 185 (235)
Q Consensus 174 LT~RE~evL~l~ 185 (235)
||+..++.+.-+
T Consensus 198 lt~~~r~~~~~l 209 (228)
T 3nnr_A 198 LTPEYRERVLAL 209 (228)
T ss_dssp BCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 899999999999
No 310
>3o60_A LIN0861 protein; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative, unknown function; 2.80A {Listeria innocua}
Probab=65.88 E-value=4.6 Score=18.04 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=4.0
Q ss_pred CHHHHHHHHHH
Q ss_conf 59999999999
Q gi|254780693|r 13 SLQELSPRLHL 23 (235)
Q Consensus 13 sl~dl~~~l~~ 23 (235)
|-..+...+..
T Consensus 20 Tk~~i~~a~~~ 30 (185)
T 3o60_A 20 TQTKLYTVLER 30 (185)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 311
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, structural genomics, MCSG, PSI-2, protein structure initiative; HET: P6G; 1.70A {Streptomyces coelicolor A3}
Probab=65.86 E-value=3.8 Score=18.69 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=5.3
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+.+..+.+...||
T Consensus 19 l~AA~~l~~~~G~ 31 (231)
T 2qib_A 19 IGVALDLFSRRSP 31 (231)
T ss_dssp HHHHHHHHHHSCG
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999997394
No 312
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281, TETR transcriptional regulator, PSI-2; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=65.79 E-value=4.7 Score=18.02 Aligned_cols=15 Identities=7% Similarity=0.122 Sum_probs=5.6
Q ss_pred HHHHHHHHHHCCCCE
Q ss_conf 999999998583785
Q gi|254780693|r 19 PRLHLIQNRIKARNF 33 (235)
Q Consensus 19 ~~l~~l~~~~~~~~f 33 (235)
..+.+..+.+.-.||
T Consensus 47 ~Il~AA~~l~~~~G~ 61 (229)
T 3bni_A 47 RILDACADLLDEVGY 61 (229)
T ss_dssp HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998490
No 313
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=65.62 E-value=5.6 Score=17.47 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=33.4
Q ss_pred CCCHHHHHHHH-HHHCCC--------CHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 49989999999-998799--------978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQ-LAGDGY--------TSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~-l~a~G~--------t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.||+.+.++|. |...-. .-.+||..+|+|+..|+.-..|.++|.
T Consensus 4 Rft~~q~~~L~~~f~~~~~~PyP~~~er~~La~~~gL~~~qV~~WF~N~R~R~ 56 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKE 56 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
T ss_conf 89999999999999986898996999999999998809999999889875144
No 314
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genomics, PSI-2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=65.53 E-value=4.4 Score=18.20 Aligned_cols=22 Identities=5% Similarity=-0.164 Sum_probs=8.6
Q ss_pred CHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 5999999999999985837858
Q gi|254780693|r 13 SLQELSPRLHLIQNRIKARNFA 34 (235)
Q Consensus 13 sl~dl~~~l~~l~~~~~~~~f~ 34 (235)
+-+.+......+-..-++.++.
T Consensus 18 ~r~~Il~aa~~l~~~~G~~~~t 39 (207)
T 2rae_A 18 TQDRISTVGIELFTEQGFDATS 39 (207)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSC
T ss_pred HHHHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999972913067
No 315
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=65.49 E-value=5.6 Score=17.46 Aligned_cols=46 Identities=26% Similarity=0.409 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHHHC-C--------CCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4499899999999987-9--------99789999949998899999999999807
Q gi|254780693|r 172 RNLTERETSCLQLAGD-G--------YTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~-G--------~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
..||+-+.++|+-.-. . ..-.++|..+|+|+..|..-..|.++|+-
T Consensus 6 ~~~t~~q~~~L~~~f~~~~~~pYPs~~~~~~La~~~~ls~~qV~~WF~N~R~r~k 60 (73)
T 1puf_B 6 RNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 60 (73)
T ss_dssp CCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999737789989999999999988299998899999998742
No 316
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=65.39 E-value=4.5 Score=18.12 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 99899999999987------99978999994999889999999999980
Q gi|254780693|r 174 LTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 174 LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
+|+-+.++|.-.=+ ...-.+||..||++++.|+.-..|-+.|.
T Consensus 14 ft~~Q~~~Le~~F~~n~~P~~~~r~~LA~~lgl~~~qV~~WFqNrR~k~ 62 (80)
T 2dms_A 14 FTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKC 62 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 9999999999999986999889999999990998888779755427874
No 317
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=65.32 E-value=3.3 Score=19.06 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=27.6
Q ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 9998799978999994999889999999999980
Q gi|254780693|r 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 183 ~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
++.-...|-++||...+||+.|++...+.++..+
T Consensus 154 ~~~~~~~t~~~Ia~~~~vs~~TI~~~yk~l~~~~ 187 (207)
T 1c9b_A 154 QASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRA 187 (207)
T ss_dssp HTSSSCCCHHHHHHHHTCCHHHHHHHHHHHGGGH
T ss_pred HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9978999999999997988999999999999999
No 318
>3hcy_A Putative two-component sensor histidine kinase protein; structural genomics, PSI, MCSG, protein structure initiative; 2.80A {Sinorhizobium meliloti 1021}
Probab=65.30 E-value=5.7 Score=17.43 Aligned_cols=131 Identities=14% Similarity=0.008 Sum_probs=72.4
Q ss_pred HCCHHHHHHHH-HHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEE
Q ss_conf 22599999999-99999858378589984177787310250442278778999624874441208799999617998373
Q gi|254780693|r 11 SSSLQELSPRL-HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIW 89 (235)
Q Consensus 11 ~~sl~dl~~~l-~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~ 89 (235)
++|++|+...+ ..+.+.++++...++.++.... .......+++..+..... ..+..........|+..
T Consensus 1 s~sl~e~l~~~~~~i~~~~~~~~~~i~l~d~~~~-----~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 69 (151)
T 3hcy_A 1 SNAIEEVYEATLDAIQGALNCDRASILLFDEAGT-----MRFVAARGLSEHYQRAVD------GHSPWITGANEPEPIFV 69 (151)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEEEECTTSC-----EEEEEEESCCHHHHHHTC------BCCSCC---CCCCCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCC-----EEEEEEECCCHHHHCCCC------CCCHHHHHHHHCCEEEE
T ss_conf 9868999999999999997999899999956996-----999999448867613667------88989999972984998
Q ss_pred CCHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEECCCCC-CCCHHHHHHHHHHHHHH
Q ss_conf 10133146672136789965425855358997216887523454105887-89989999999999999
Q gi|254780693|r 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-MLANEVIIEAHGACYQV 156 (235)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 156 (235)
........ .. .+.......+..+.+++|+..+..-.|.+.+....+ ....+++-.+...+..+
T Consensus 70 ~d~~~~~~---~~-~~~~~~~~~~i~s~l~vPL~~~g~~~G~l~l~~~~~~~~~~~~~~ll~~la~~i 133 (151)
T 3hcy_A 70 ENVDDAEF---SR-ELKESIVGEGIAALGFFPLVTEGRLIGKFMTYYDRPHRFADSEIGMALTIARQL 133 (151)
T ss_dssp SCGGGSCC---CH-HHHHHHHHHTCCEEEEEEEESSSSEEEEEEEEESSCCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHCCC---CC-HHHHHHHCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 27364832---10-126666413956999976776477469999976256679999999999999999
No 319
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=65.18 E-value=3 Score=19.40 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=5.0
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+.+..+.+.-.||
T Consensus 18 l~aA~~lf~~~G~ 30 (205)
T 1rkt_A 18 LEAAKTVFKRKGF 30 (205)
T ss_dssp HHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999997491
No 320
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=65.18 E-value=5.7 Score=17.42 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 4998999999999879------9978999994999889999999999980799
Q gi|254780693|r 173 NLTERETSCLQLAGDG------YTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~ 219 (235)
.+|+.+.++|.-.=.= ..-+++|..||+++..|+.-..|-+.|+--.
T Consensus 7 ~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~~V~~WFqNrR~k~kk~ 59 (67)
T 2k40_A 7 AFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRS 59 (67)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHH
T ss_conf 89999999999999877999989999999994959889558169889999874
No 321
>3cjd_A Transcriptional regulator, TETR family; YP_510936.1, putative TETR transcriptional regulator, structural genomics; HET: STE; 1.79A {Jannaschia SP}
Probab=65.06 E-value=4 Score=18.52 Aligned_cols=11 Identities=27% Similarity=0.453 Sum_probs=3.6
Q ss_pred HHHHHHHCCCC
Q ss_conf 99999858378
Q gi|254780693|r 22 HLIQNRIKARN 32 (235)
Q Consensus 22 ~~l~~~~~~~~ 32 (235)
.+..+.+.-.|
T Consensus 19 ~aA~~l~~~~G 29 (198)
T 3cjd_A 19 DLAEAQIEAEG 29 (198)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHC
T ss_conf 99999999709
No 322
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=65.04 E-value=5.7 Score=17.40 Aligned_cols=45 Identities=13% Similarity=0.174 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHH-HC-----CCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999-87-----999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLA-GD-----GYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~-a~-----G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.+|+-+.++|.-. .. ...-.+||..+|++++.|+.-..|-+.|+-
T Consensus 9 r~T~~Q~~~Le~~F~~~~~P~~~~~~~La~~~gl~~~qV~~WF~NrR~k~K 59 (76)
T 2ecc_A 9 RKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALK 59 (76)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 899999999999999869998999999999988599999999999999998
No 323
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=64.89 E-value=4.3 Score=18.28 Aligned_cols=44 Identities=11% Similarity=0.087 Sum_probs=29.9
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 987999789999949998899999999999807997899999999769
Q gi|254780693|r 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 (235)
Q Consensus 185 ~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~G 232 (235)
...|+|-++.|..+|||+.||..+.+.- ...+..-+...|-.+|
T Consensus 15 ~~~glsq~~la~~~gvs~~~i~~~e~G~----~~p~~~~l~~ia~~~~ 58 (76)
T 1adr_A 15 KKLKIRQAALGKMVGVSNVAISQWERSE----TEPNGENLLALSKALQ 58 (76)
T ss_dssp HHHTCCHHHHHHHHTSCHHHHHHHHTTS----SCCCHHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 9939999999999796999999998799----8999999999999969
No 324
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=64.89 E-value=5.7 Score=17.38 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=32.8
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 499899999999987------99978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.+|+-+.++|.-.=. ...-++||..||++++.|+.-..|=+.|.
T Consensus 15 ~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~lgl~~~qV~vWFqNrR~k~ 64 (77)
T 1nk2_P 15 LFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKT 64 (77)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHCHHHHHHH
T ss_conf 98999999999999877998999999999994988657234162088999
No 325
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator of TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=64.77 E-value=3.2 Score=19.24 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 89999999999980799
Q gi|254780693|r 203 HTVNAYLGSATVKLDAV 219 (235)
Q Consensus 203 ~TV~~hl~~i~~KLg~~ 219 (235)
..++....-+.+=||+.
T Consensus 179 ~~~~~~~~~l~~~l~~~ 195 (203)
T 3b81_A 179 LKLTAFKETLIKILDAD 195 (203)
T ss_dssp HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 99999999999987888
No 326
>1xd7_A YWNA; structural genomics, protein structure initiative, winged helix DNA binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=64.72 E-value=5.8 Score=17.36 Aligned_cols=15 Identities=0% Similarity=-0.088 Sum_probs=5.7
Q ss_pred ECCCCCCCCHHHHHH
Q ss_conf 105887899899999
Q gi|254780693|r 134 FTSEFLMLANEVIIE 148 (235)
Q Consensus 134 ~~~~~~~~~~~~~~~ 148 (235)
++..-......+++.
T Consensus 64 Lar~p~~Itl~dI~~ 78 (145)
T 1xd7_A 64 LKKDPADISLLEVYR 78 (145)
T ss_dssp ESSCGGGCBHHHHHH
T ss_pred CCCCHHHCCHHHHHH
T ss_conf 118989867999999
No 327
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=64.59 E-value=5.8 Score=17.34 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 789999949998899999999999807
Q gi|254780693|r 191 SEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 191 ~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
-++||..||++++.|+.-..|-+.|.-
T Consensus 64 r~~LA~~l~l~~~~V~vWFqNrR~k~k 90 (97)
T 1b72_A 64 RVEIAATLELNETQVKIWFQNRRMKQK 90 (97)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 999988719996570231488888999
No 328
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=64.56 E-value=4.1 Score=18.41 Aligned_cols=15 Identities=7% Similarity=0.308 Sum_probs=5.7
Q ss_pred HHHHHHHHHHCCCCE
Q ss_conf 999999998583785
Q gi|254780693|r 19 PRLHLIQNRIKARNF 33 (235)
Q Consensus 19 ~~l~~l~~~~~~~~f 33 (235)
..+.+..+.+.-.||
T Consensus 30 ~Il~aA~~l~~~~G~ 44 (217)
T 3mvp_A 30 KILQVAKDLFSDKTY 44 (217)
T ss_dssp HHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999987193
No 329
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A*
Probab=64.52 E-value=1.1 Score=22.44 Aligned_cols=12 Identities=8% Similarity=-0.103 Sum_probs=5.6
Q ss_pred CEEEEEEECCCC
Q ss_conf 358997216887
Q gi|254780693|r 116 AGIAFPVRLGFH 127 (235)
Q Consensus 116 ~~~~~pv~~~~~ 127 (235)
.+..+|+.....
T Consensus 254 ~l~~~pl~~~~~ 265 (313)
T 2h98_A 254 NLLYIPILDDDA 265 (313)
T ss_dssp TEEEEEBCSTTC
T ss_pred CEEEEECCCCCC
T ss_conf 989998789986
No 330
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=64.46 E-value=4.3 Score=18.27 Aligned_cols=44 Identities=23% Similarity=0.449 Sum_probs=34.7
Q ss_pred CCCHHHHHHHH-HHHCCC--------CHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 49989999999-998799--------978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQ-LAGDGY--------TSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~-l~a~G~--------t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.+|+.+.++|+ |..+-. .-.++|..+|+|+..|+.-..|.++|.
T Consensus 9 ~f~~~~~~iL~~wf~~~~~nPyP~~~~k~~La~~~~l~~~qV~~WF~N~R~r~ 61 (64)
T 1du6_A 9 HMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRY 61 (64)
T ss_dssp SSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999981679996999999999998919999799899988766
No 331
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=64.39 E-value=4.3 Score=18.26 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=22.0
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 998799978999994999889999999
Q gi|254780693|r 184 LAGDGYTSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~iS~~TV~~hl~ 210 (235)
+-..|.|-.+.|..||||+.|+...++
T Consensus 20 L~~~gisq~~LA~~lgvs~~~is~i~~ 46 (113)
T 2eby_A 20 LEPLDLKINELAELLHVHRNSVSALIN 46 (113)
T ss_dssp TTTTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 876699999999996989999999993
No 332
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=64.27 E-value=4.6 Score=18.07 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=10.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCE
Q ss_conf 599999999999998583785
Q gi|254780693|r 13 SLQELSPRLHLIQNRIKARNF 33 (235)
Q Consensus 13 sl~dl~~~l~~l~~~~~~~~f 33 (235)
+...-+..+++..+.+.-.||
T Consensus 11 a~~tRe~Il~aA~~l~~~~G~ 31 (196)
T 2qwt_A 11 AARNRARVLEVAYDTFAAEGL 31 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 899999999999999998697
No 333
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response element family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=64.04 E-value=4.9 Score=17.85 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=22.2
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 998799978999994999889999999
Q gi|254780693|r 184 LAGDGYTSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~iS~~TV~~hl~ 210 (235)
....|+|-+++|..+|||..||..+-+
T Consensus 23 R~~~gltq~elA~~~gvs~~~is~~E~ 49 (83)
T 3f6w_A 23 RSAAGITQKELAARLGRPQSFVSKTEN 49 (83)
T ss_dssp HHHHTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 998299999999897389999999987
No 334
>2gfn_A HTH-type transcriptional regulator PKSA related protein; transcriptional regulator TETR, PSI-2, regulatory protein, structural genomics; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=64.01 E-value=2.3 Score=20.28 Aligned_cols=17 Identities=6% Similarity=0.034 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHHHHC
Q ss_conf 99889999999999980
Q gi|254780693|r 200 LSVHTVNAYLGSATVKL 216 (235)
Q Consensus 200 iS~~TV~~hl~~i~~KL 216 (235)
-....+..++..+.+.+
T Consensus 184 ~~~~~~~~~l~~~l~~~ 200 (209)
T 2gfn_A 184 SAEDAAARCVDAAVRRT 200 (209)
T ss_dssp TSTTHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 09999999999999744
No 335
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3
Probab=64.00 E-value=5.7 Score=17.42 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=15.3
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 98799978999994999889999999
Q gi|254780693|r 185 AGDGYTSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 185 ~a~G~t~~eIA~~L~iS~~TV~~hl~ 210 (235)
-..|+|-++.|..+|||+.||..+-+
T Consensus 11 ~~~g~tq~~lA~~~Gvs~~~is~~E~ 36 (111)
T 1b0n_A 11 KEKGYSLSELAEKAGVAKSYLSSIER 36 (111)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 98399999998784988999999987
No 336
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=63.86 E-value=6 Score=17.25 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=34.0
Q ss_pred CCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999879------99789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAGDG------YTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.+|+-|.++|.-.=.- ..-.++|..||++++.|+.-..|-+.|.-
T Consensus 24 ~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~k 74 (81)
T 1fjl_A 24 TFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLR 74 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 889999999999998869999899999999929998891675244778887
No 337
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=63.71 E-value=5.8 Score=17.35 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=23.7
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9987999789999949998899999999
Q gi|254780693|r 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
....|+|-++.|..+|+|..||..+-+.
T Consensus 19 R~~~gltq~elA~~~gvs~~~is~~E~G 46 (84)
T 2ef8_A 19 RKEASLSQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 9994999999999974799999999879
No 338
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=63.65 E-value=6 Score=17.22 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=32.3
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 9879997899999499988999999999998079978999999997699
Q gi|254780693|r 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 (235)
Q Consensus 185 ~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gl 233 (235)
...|+|-+++|..+|||+.++..+-+. -...+-..+...|-.+|+
T Consensus 23 ~~~gltq~~lA~~~gis~~~i~~~E~g----~~~p~~~~l~~ia~~l~v 67 (74)
T 1y7y_A 23 TAKGLSQETLAFLSGLDRSYVGGVERG----QRNVSLVNILKLATALDI 67 (74)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTT----CSCCBHHHHHHHHHHTTS
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCC----CCCCCHHHHHHHHHHHCC
T ss_conf 981999999998969799999999879----989999999999999893
No 339
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=63.64 E-value=4.4 Score=18.21 Aligned_cols=17 Identities=29% Similarity=0.309 Sum_probs=9.6
Q ss_pred HHHHHHHHCCCCHHHHH
Q ss_conf 99999998799978999
Q gi|254780693|r 179 TSCLQLAGDGYTSEEIA 195 (235)
Q Consensus 179 ~evL~l~a~G~t~~eIA 195 (235)
..+..++-.|..+++=|
T Consensus 183 ~~~~~~~l~gl~~~~g~ 199 (206)
T 1vi0_A 183 NSVLELLVSGIHNKEGG 199 (206)
T ss_dssp HHHHHHHHHCSBCC---
T ss_pred HHHHHHHHHHCCCCCCC
T ss_conf 99999999757899998
No 340
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=63.64 E-value=5.1 Score=17.74 Aligned_cols=44 Identities=14% Similarity=0.141 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 4998999999999879------9978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLAGDG------YTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.+|+-+.++|.-.=+- ..-++||..||+++.+|+.-..|-+.|.
T Consensus 23 ~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~vWFqNrR~k~ 72 (93)
T 3a01_A 23 SFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKW 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999877999999999999996888778899879789999
No 341
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=63.61 E-value=4.5 Score=18.17 Aligned_cols=15 Identities=7% Similarity=-0.022 Sum_probs=6.1
Q ss_pred HHHHHHHHHHCCCCE
Q ss_conf 999999998583785
Q gi|254780693|r 19 PRLHLIQNRIKARNF 33 (235)
Q Consensus 19 ~~l~~l~~~~~~~~f 33 (235)
..+++..+.+.-.||
T Consensus 19 ~Il~aa~~l~~~~G~ 33 (194)
T 2q24_A 19 KILAAAVRVFSEEGL 33 (194)
T ss_dssp HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999998696
No 342
>3clc_A Regulatory protein; protein-DNA complex, transcriptional regulator, helix-turn- helix, DNA-bending, plasmid, transcription regulator/DNA complex; 2.80A {Enterobacter SP}
Probab=63.55 E-value=6.1 Score=17.21 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=30.5
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 987999789999949998899999999999807997899999999769
Q gi|254780693|r 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 (235)
Q Consensus 185 ~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~G 232 (235)
...|+|-+++|..+|+|+.||..+-+.- .-.+-..+...|-.+|
T Consensus 21 ~~~glsq~~lA~~~gis~~~i~~~E~G~----~~ps~~~l~~la~~l~ 64 (82)
T 3clc_A 21 LEKGMTQEDLAYKSNLDRTYISGIERNS----RNLTIKSLELIMKGLE 64 (82)
T ss_dssp HHTTCCHHHHHHHHTSCHHHHHHHHTTC----CCCBHHHHHHHHHHHT
T ss_pred HHCCCCHHHHHHCCCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 9839999999570399887999998599----8999999999999979
No 343
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=63.54 E-value=4.3 Score=18.28 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=33.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999999998799978999994999889999999999980799
Q gi|254780693|r 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 (235)
Q Consensus 178 E~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~ 219 (235)
..||.+|+.+|++-.+|-+-|+|+.+.|+. -++|.+-+-..
T Consensus 10 ~~eI~~Lm~~GYs~~~v~~AL~Ia~Nniem-A~~ILrEF~~~ 50 (53)
T 2d9s_A 10 SSEIERLMSQGYSYQDIQKALVIAHNNIEM-AKNILREFSGP 50 (53)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTTTCHHH-HHHHHHHHTSC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCHHH-HHHHHHHHCCC
T ss_conf 189999998554499999999998611999-99999997354
No 344
>3dv8_A Transcriptional regulator, CRP/FNR family; RER070207001219, structural genomics, joint center for structural genomics, JCSG; 2.55A {Eubacterium rectale atcc 33656}
Probab=63.53 E-value=6.1 Score=17.21 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 997899999499988999999999998
Q gi|254780693|r 189 YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 189 ~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.|.++||..||+|+.||...++...++
T Consensus 170 ~t~~~lA~~lg~sr~tvsr~l~~L~~~ 196 (220)
T 3dv8_A 170 ITHETIANHLGSHREVITRMLRYFQVE 196 (220)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 999999999798999999999999988
No 345
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=63.16 E-value=6.2 Score=17.16 Aligned_cols=45 Identities=20% Similarity=0.185 Sum_probs=33.7
Q ss_pred CCCHHHHHHHHHHH------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 49989999999998------7999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAG------DGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a------~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.+|+-+.++|.-.= ....-.++|..||+++..|+.-..|-+.|.-
T Consensus 8 ~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~vWFqNrRak~k 58 (68)
T 1ahd_P 8 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWK 58 (68)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 899999999999986089999999999999969998897896488889998
No 346
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=63.12 E-value=2.4 Score=20.03 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=30.0
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999879997899999499988999999999998
Q gi|254780693|r 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 178 E~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
-.||.+|+.+|+|-.+|-+-|+|+.+.|+.- ++|.+-
T Consensus 12 ~~eI~~Lm~~GYs~~dv~rAL~Ia~NniemA-~~ILrE 48 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIAQNNVEVA-RSILRE 48 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTTTCHHHH-HHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH-HHHHHH
T ss_conf 1799999986655999999999986229999-999998
No 347
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=63.10 E-value=5.7 Score=17.38 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHH--HCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 4998999999999--8799978999994999889999999
Q gi|254780693|r 173 NLTERETSCLQLA--GDGYTSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 173 ~LT~RE~evL~l~--a~G~t~~eIA~~L~iS~~TV~~hl~ 210 (235)
.+..=|++++... ..| +..+.|..||||..|...-++
T Consensus 17 ~~~~~Ek~~I~~aL~~~g-~~~~aA~~Lgisr~tL~rKlk 55 (61)
T 1g2h_A 17 IIGFYEAQVLKLFYAEYP-STRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp SCSHHHHHHHHHHHHHSC-SHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC-CHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999999999968-999999997978999999999
No 348
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=62.95 E-value=4.8 Score=17.96 Aligned_cols=14 Identities=14% Similarity=-0.066 Sum_probs=5.3
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 98899999999999
Q gi|254780693|r 201 SVHTVNAYLGSATV 214 (235)
Q Consensus 201 S~~TV~~hl~~i~~ 214 (235)
++..++.-+..+..
T Consensus 186 ~~~~~~~lv~~~l~ 199 (214)
T 2zb9_A 186 DDAFVTALVTNLLD 199 (214)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
T ss_conf 99999999999985
No 349
>3g1l_A Transcriptional regulatory repressor protein (TETR-family) EThr; DNA-binding, transcription regulation; HET: RF2; 1.70A {Mycobacterium tuberculosis} PDB: 3g1o_A*
Probab=62.87 E-value=4.7 Score=17.98 Aligned_cols=17 Identities=24% Similarity=0.239 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHCCCCEE
Q ss_conf 99999999985837858
Q gi|254780693|r 18 SPRLHLIQNRIKARNFA 34 (235)
Q Consensus 18 ~~~l~~l~~~~~~~~f~ 34 (235)
...+.+..+.+.-.||.
T Consensus 47 ~~Il~AA~~l~~e~G~~ 63 (256)
T 3g1l_A 47 LAILATAENLLEDRPLA 63 (256)
T ss_dssp HHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 99999999999983945
No 350
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor A3}
Probab=62.60 E-value=5.9 Score=17.29 Aligned_cols=45 Identities=20% Similarity=0.178 Sum_probs=30.0
Q ss_pred HHHCCCCHHHHHHHHC--CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 9987999789999949--998899999999999807997899999999769
Q gi|254780693|r 184 LAGDGYTSEEIAEKLG--LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~--iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~G 232 (235)
-...|+|-+|.|..+| ||..|+..+-+.- ...+-..+...|-.+|
T Consensus 17 R~~~gltq~elA~~~g~~is~~~is~~E~G~----~~ps~~~l~~la~~l~ 63 (71)
T 2ewt_A 17 RTQQGLSLHGVEEKSQGRWKAVVVGSYERGD----RAVTVQRLAELADFYG 63 (71)
T ss_dssp HHHTTCCHHHHHHHTTTSSCHHHHHHHHHTC----SCCCHHHHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHCCCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 9884998999998988874799999998599----6676899999999989
No 351
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=62.41 E-value=2.1 Score=20.45 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=33.4
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCH------------HHHHHHHHHHHHHC
Q ss_conf 999999987999789999949998------------89999999999980
Q gi|254780693|r 179 TSCLQLAGDGYTSEEIAEKLGLSV------------HTVNAYLGSATVKL 216 (235)
Q Consensus 179 ~evL~l~a~G~t~~eIA~~L~iS~------------~TV~~hl~~i~~KL 216 (235)
-|+++++-+|+|..||+..+.+-+ .||++++++||.+.
T Consensus 370 Dqtlr~~N~G~t~~EI~e~i~LP~~l~~~~~~~~~YG~~~~~vraiy~~y 419 (658)
T 2cfu_A 370 DQTLHLANQGVTIGQVHNRLRLPPSLDQEWYDRGYHGSVSHNARAVLNRY 419 (658)
T ss_dssp HHHHHHHTTTCCTTTGGGTCCCCHHHHTCGGGSCSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99999998799999998624089656527321201674124599999984
No 352
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=62.34 E-value=5.8 Score=17.36 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=24.3
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9987999789999949998899999999
Q gi|254780693|r 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
....|+|-+|.|..+|||+.||..+-+.
T Consensus 22 R~~~glsq~elA~~~gvs~~~is~~E~G 49 (91)
T 1x57_A 22 RQSKGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp HHTTTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 9981998999998719899999999879
No 353
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=62.33 E-value=6.4 Score=17.06 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=23.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 789999949998899999999999807
Q gi|254780693|r 191 SEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 191 ~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
-.+||..||++++.|+.-..|-+.|.-
T Consensus 47 ~~~LA~~lgl~~~~I~~WF~NrR~k~k 73 (80)
T 2da3_A 47 LDHIAHEVGLKKRVVQVWFQNTRARER 73 (80)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999979099995895698888885
No 354
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=62.18 E-value=5.7 Score=17.39 Aligned_cols=13 Identities=8% Similarity=-0.105 Sum_probs=6.1
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999999858378
Q gi|254780693|r 20 RLHLIQNRIKARN 32 (235)
Q Consensus 20 ~l~~l~~~~~~~~ 32 (235)
.+.+..+.+.-.|
T Consensus 19 Il~aA~~l~~~~G 31 (190)
T 2v57_A 19 ILDAAMLVLADHP 31 (190)
T ss_dssp HHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999999869
No 355
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=61.97 E-value=2.1 Score=20.50 Aligned_cols=15 Identities=27% Similarity=0.166 Sum_probs=5.2
Q ss_pred CCHHHH-HHHHHHHCC
Q ss_conf 998999-999999879
Q gi|254780693|r 174 LTERET-SCLQLAGDG 188 (235)
Q Consensus 174 LT~RE~-evL~l~a~G 188 (235)
+++... ..+.++..|
T Consensus 147 ~~~~~~~~~~~~~~~~ 162 (202)
T 2id6_A 147 VTEEIALKFLMWFFSG 162 (202)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 356
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=61.89 E-value=6.5 Score=17.01 Aligned_cols=45 Identities=16% Similarity=0.331 Sum_probs=35.3
Q ss_pred CCCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 4998999999999879------99789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAGDG------YTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.+|+-+.++|.-.=.- .+-++||..||++++.|+.-..|-+.|..
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~lgL~~~~V~~WFqNrR~k~r 63 (80)
T 2cue_A 13 SFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWR 63 (80)
T ss_dssp CSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHCCCCCHHHHH
T ss_conf 989999999999998669989999999999979888783361403008898
No 357
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, structural genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=61.18 E-value=2.6 Score=19.87 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=8.0
Q ss_pred CHHHHHHHHHHHHHHHCCCCE
Q ss_conf 599999999999998583785
Q gi|254780693|r 13 SLQELSPRLHLIQNRIKARNF 33 (235)
Q Consensus 13 sl~dl~~~l~~l~~~~~~~~f 33 (235)
+-+++......+-..-+++++
T Consensus 9 tr~~Il~aa~~l~~~~G~~~~ 29 (183)
T 1zk8_A 9 TLQKIVETAAEIADANGVQEV 29 (183)
T ss_dssp CHHHHHHHHHHHHHHHCGGGC
T ss_pred HHHHHHHHHHHHHHHHCCCCC
T ss_conf 899999999999997492507
No 358
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomics; 1.80A {Silicibacter pomeroyi}
Probab=61.12 E-value=6.7 Score=16.92 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=22.3
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 98799978999994999889999999
Q gi|254780693|r 185 AGDGYTSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 185 ~a~G~t~~eIA~~L~iS~~TV~~hl~ 210 (235)
...|+|-++.|..+|+|..||...-+
T Consensus 24 ~~~gltq~elA~~lgvs~~~is~~E~ 49 (86)
T 3eus_A 24 LDAGLTQADLAERLDKPQSFVAKVET 49 (86)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHHHT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 98499999999997969999999988
No 359
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile 630}
Probab=60.91 E-value=6.7 Score=16.89 Aligned_cols=10 Identities=10% Similarity=0.348 Sum_probs=3.6
Q ss_pred CCHHHHHHHH
Q ss_conf 9989999999
Q gi|254780693|r 174 LTERETSCLQ 183 (235)
Q Consensus 174 LT~RE~evL~ 183 (235)
|++.+...+.
T Consensus 94 l~~~~~~~i~ 103 (126)
T 3ivp_A 94 FTDADLVIME 103 (126)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHHH
T ss_conf 9999999999
No 360
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=60.87 E-value=6.5 Score=16.99 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=30.2
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 987999789999949998899999999999807997899999999769
Q gi|254780693|r 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 (235)
Q Consensus 185 ~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~G 232 (235)
...|+|-+|+|..+|+|+.||..+-+.- .-.+-......|-.+|
T Consensus 38 ~~~glsq~elA~~~gis~~~is~iE~G~----~~ps~~~l~~ia~~l~ 81 (99)
T 3g5g_A 38 LEKGMTQEDLAYKSNLDRTYISGIERNS----RNLTIKSLELIMKGLE 81 (99)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTTC----SCCBHHHHHHHHHHTT
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 9819999999999797898899998699----8999999999999969
No 361
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=60.75 E-value=5.4 Score=17.55 Aligned_cols=10 Identities=10% Similarity=0.142 Sum_probs=3.3
Q ss_pred HHHHHCCCCE
Q ss_conf 9998583785
Q gi|254780693|r 24 IQNRIKARNF 33 (235)
Q Consensus 24 l~~~~~~~~f 33 (235)
+-..-++++.
T Consensus 22 l~~~~G~~~~ 31 (191)
T 3on4_A 22 LIQKDGYNAF 31 (191)
T ss_dssp HHHHHCGGGC
T ss_pred HHHHHCCCCC
T ss_conf 9997395637
No 362
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=60.60 E-value=6.8 Score=16.85 Aligned_cols=47 Identities=17% Similarity=0.171 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99899999999987------999789999949998899999999999807997
Q gi|254780693|r 174 LTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 (235)
Q Consensus 174 LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~n 220 (235)
+|+-+.++|.-.=. ...-.+||..+|++++.|+.-..|-+.|+-=.+
T Consensus 32 ~T~eQl~~Le~~F~~n~yPs~~~~~~LA~~~gLs~~qV~~WFqNrR~k~K~~~ 84 (96)
T 3nar_A 32 KTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 89999999999999869998999999999969899999998999999998511
No 363
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=60.49 E-value=6.7 Score=16.91 Aligned_cols=13 Identities=0% Similarity=0.386 Sum_probs=5.6
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+.+..+.+.-.||
T Consensus 37 l~aA~~l~~~~G~ 49 (218)
T 3dcf_A 37 IKVATELFREKGY 49 (218)
T ss_dssp HHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998493
No 364
>2ras_A Transcriptional regulator, TETR family; YP_495839.1, predicted transcriptional regulator of TETR/ACRR family; 1.80A {Novosphingobium aromaticivorans DSM12444}
Probab=60.21 E-value=3.4 Score=19.02 Aligned_cols=41 Identities=15% Similarity=0.087 Sum_probs=20.0
Q ss_pred HHHHHHCCCCHHHHHHH--HCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 99999879997899999--499988999999999998079978
Q gi|254780693|r 181 CLQLAGDGYTSEEIAEK--LGLSVHTVNAYLGSATVKLDAVNR 221 (235)
Q Consensus 181 vL~l~a~G~t~~eIA~~--L~iS~~TV~~hl~~i~~KLg~~nR 221 (235)
.+..+..|......... -...+..++..+..++.-|.+..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gl~~~~~ 201 (212)
T 2ras_A 159 LVNQMCAPYCALNTMTTFMERLSEDKLARIVDAVFDGLSAQDR 201 (212)
T ss_dssp HHHHHSGGGTSHHHHHHHGGGCCHHHHHHHHHHHHHHCCSSCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999999851458777999999999999987357888
No 365
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=59.83 E-value=3.5 Score=18.91 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=7.2
Q ss_pred CCCHHHHHHHHHHHH
Q ss_conf 999889999999999
Q gi|254780693|r 199 GLSVHTVNAYLGSAT 213 (235)
Q Consensus 199 ~iS~~TV~~hl~~i~ 213 (235)
.+|+..+..++..+.
T Consensus 161 ~~s~eei~~~~~~li 175 (177)
T 3kkc_A 161 KMTVEDLLKYYLTMV 175 (177)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
T ss_conf 999999999999986
No 366
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=59.79 E-value=5.9 Score=17.30 Aligned_cols=36 Identities=8% Similarity=0.005 Sum_probs=24.6
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHH-----------------HHHHHHHHCCCC
Q ss_conf 998799978999994999889999-----------------999999980799
Q gi|254780693|r 184 LAGDGYTSEEIAEKLGLSVHTVNA-----------------YLGSATVKLDAV 219 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~iS~~TV~~-----------------hl~~i~~KLg~~ 219 (235)
-.+.|+|-+|+|..++||..++.. +++++.+-||+.
T Consensus 16 R~~~glS~~elA~~l~Is~~~l~~iE~g~~~~~~~~~~~~g~lr~ya~~Lgld 68 (112)
T 2wus_R 16 REERRITLLDASLFTNINPSKLKRIEEGDLKGLDAEVYIKSYIKRYSEFLELS 68 (112)
T ss_dssp HHTTTCCHHHHHHHSSCCHHHHHHHHHTCCTTSSCHHHHHHHHHHHHHHSSCC
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 99969999999999856899999988789533765228999999999996979
No 367
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=59.62 E-value=7.1 Score=16.74 Aligned_cols=83 Identities=8% Similarity=0.022 Sum_probs=36.3
Q ss_pred CCHHHHHHHHHHHHHHHCCC--CEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHH-H-CCCHHHH--HHHHCCC
Q ss_conf 25999999999999985837--858998417778731025044227877899962487444-1-2087999--9961799
Q gi|254780693|r 12 SSLQELSPRLHLIQNRIKAR--NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE-T-YGDDFLF--HFNSGLL 85 (235)
Q Consensus 12 ~sl~dl~~~l~~l~~~~~~~--~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~dp~~~--~~~~~~~ 85 (235)
.+..++...+..+.+.+... +|.+........+. +..-...|+..+..... . ...+.+. ..-.-..
T Consensus 42 ~~~~~v~~~l~~L~~~y~~~~~g~~l~~~~ggy~l~--------t~~~~~~~v~~~~~~~~~~~LS~aalETLAIIAY~Q 113 (219)
T 2z99_A 42 QPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMY--------TRARFAPYVEKLLLDGARTKLTRAALETLAVVAYRQ 113 (219)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEE--------ECGGGHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEE--------ECHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 988999999999999874266635899968958999--------575661689998246766767899999999999739
Q ss_pred CEEECCHHHHCCCCCHH
Q ss_conf 83731013314667213
Q gi|254780693|r 86 PIIWQSIQEETVIESSG 102 (235)
Q Consensus 86 p~~~~~~~~~~~~~~~~ 102 (235)
|+.-..+..-.+.....
T Consensus 114 PiTr~eIe~IRGV~s~~ 130 (219)
T 2z99_A 114 PVTRARVSAVRGVNVDA 130 (219)
T ss_dssp SEEHHHHHHHHTSCCHH
T ss_pred CCCHHHHHHHCCCCHHH
T ss_conf 84799999873977678
No 368
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.60 E-value=7.1 Score=16.74 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=24.3
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 78999994999889999999999980799
Q gi|254780693|r 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 (235)
Q Consensus 191 ~~eIA~~L~iS~~TV~~hl~~i~~KLg~~ 219 (235)
-.+||..++++++.|+....|-+.|+--.
T Consensus 35 ~~~La~~~~L~~~~V~~WFqNrRak~k~~ 63 (71)
T 2da7_A 35 LLKISIAVGLPQEFVKEWFEQRKVYQYSN 63 (71)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999998809899899627504134314
No 369
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=59.41 E-value=7.1 Score=16.72 Aligned_cols=27 Identities=11% Similarity=0.116 Sum_probs=23.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 997899999499988999999999998
Q gi|254780693|r 189 YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 189 ~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.|.++||..+|+|..||+.-+++..++
T Consensus 179 ~t~~~lA~~lg~sr~tv~r~l~~L~~~ 205 (227)
T 3dkw_A 179 VAKQLVAGHLSIQPETFSRIMHRLGDE 205 (227)
T ss_dssp SCTHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 059999888699899999999999978
No 370
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded) form, allostery, DNA binding; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3h3u_A*
Probab=59.32 E-value=7.1 Score=16.71 Aligned_cols=27 Identities=41% Similarity=0.399 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999789999949998899999999999
Q gi|254780693|r 188 GYTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 188 G~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
-.|-++||..+|+|+.||...+++..+
T Consensus 177 ~~t~~~lA~~lg~s~~tvsr~l~~L~~ 203 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAH 203 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 789999998879899999999999998
No 371
>3jsj_A Putative TETR-family transcriptional regulator; NP_821317.1, putative transcriptional regulator, structural genomics; 2.10A {Streptomyces avermitilis ma-4680}
Probab=59.29 E-value=6.9 Score=16.81 Aligned_cols=13 Identities=8% Similarity=-0.084 Sum_probs=4.6
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+.+..+.+...||
T Consensus 15 l~aa~~l~~~~G~ 27 (190)
T 3jsj_A 15 LEAAAALTYRDGV 27 (190)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999997697
No 372
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=58.97 E-value=7.2 Score=16.66 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=25.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 789999949998899999999999807997
Q gi|254780693|r 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 (235)
Q Consensus 191 ~~eIA~~L~iS~~TV~~hl~~i~~KLg~~n 220 (235)
-.+||..|++++..|+.-..|-++|.-=.|
T Consensus 129 ~~~lA~~l~l~~~~V~vWF~NrR~k~kr~~ 158 (164)
T 2xsd_C 129 ITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 999999978498986897288768986489
No 373
>3he0_A Transcriptional regulator, TETR family; ACRR, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=58.60 E-value=4.6 Score=18.06 Aligned_cols=11 Identities=18% Similarity=0.229 Sum_probs=3.9
Q ss_pred CCHHHHHHHHH
Q ss_conf 99889999999
Q gi|254780693|r 200 LSVHTVNAYLG 210 (235)
Q Consensus 200 iS~~TV~~hl~ 210 (235)
.++..++..+.
T Consensus 177 ~~~~~i~~~i~ 187 (196)
T 3he0_A 177 LDDDALEAAIE 187 (196)
T ss_dssp CCHHHHHHHHH
T ss_pred CCHHHHHHHHH
T ss_conf 99999999999
No 374
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=58.37 E-value=4.4 Score=18.18 Aligned_cols=15 Identities=7% Similarity=-0.088 Sum_probs=5.1
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 988999999999998
Q gi|254780693|r 201 SVHTVNAYLGSATVK 215 (235)
Q Consensus 201 S~~TV~~hl~~i~~K 215 (235)
++..++.-+.-+.+-
T Consensus 174 ~~~~i~~~~~~~~~~ 188 (195)
T 3pas_A 174 TDEHIELAFNMAWDA 188 (195)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 599999999999996
No 375
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.36 E-value=6 Score=17.27 Aligned_cols=44 Identities=5% Similarity=0.141 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 99899999999987------999789999949998899999999999807
Q gi|254780693|r 174 LTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 174 LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
+|+-+.++|+-.=. ...-.+||..++++++.|+.-..|-++|+.
T Consensus 14 ~t~~Q~~~Le~~F~~~~~P~~~~~~~LA~~~gL~~~qV~~WFqNrR~r~k 63 (75)
T 2da5_A 14 RAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVN 63 (75)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999869998999999999929799999997999998776
No 376
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; 2.20A {Oenococcus oeni psu-1}
Probab=58.34 E-value=7.4 Score=16.59 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=5.8
Q ss_pred HHHHHCCCCHHHHH
Q ss_conf 99998799978999
Q gi|254780693|r 182 LQLAGDGYTSEEIA 195 (235)
Q Consensus 182 L~l~a~G~t~~eIA 195 (235)
......|.+.++|.
T Consensus 99 ~~~~~~g~~~eei~ 112 (126)
T 3by6_A 99 AELIKSGVKGERIK 112 (126)
T ss_dssp HHHHHTTCCHHHHH
T ss_pred HHHHHCCCCHHHHH
T ss_conf 99999598999999
No 377
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=58.27 E-value=3 Score=19.42 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=31.2
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 999999998799978999994999889999999999980
Q gi|254780693|r 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 178 E~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
..++.+|+.+|++-.+|-+-|+|+.+.|+.- ++|.+-+
T Consensus 5 ~~eI~~Lm~~GYs~~~v~rAL~Ia~NniemA-~~ILrEF 42 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQKALVIAQNNIEMA-KNILREF 42 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHHHHHHTTTCHHHH-HHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH-HHHHHHH
T ss_conf 3899999986776999999999986219999-9999987
No 378
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=58.22 E-value=7.4 Score=16.58 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHCC------CCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 998999999999879------997899999499988999999999998079978
Q gi|254780693|r 174 LTERETSCLQLAGDG------YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 (235)
Q Consensus 174 LT~RE~evL~l~a~G------~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR 221 (235)
+|+-+.++|.-.=.- ..-.+||..+|+++..|+.-..|-+.|.--.++
T Consensus 10 ~t~~Q~~~Le~~F~~n~~P~~~~~~~LA~~~~L~~~qV~~WFqNrR~r~kk~~~ 63 (66)
T 1bw5_A 10 LNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999988599999999999999390999988976888889998877
No 379
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=58.09 E-value=6.5 Score=16.99 Aligned_cols=23 Identities=9% Similarity=0.017 Sum_probs=11.9
Q ss_pred HHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 99949998899999999999807
Q gi|254780693|r 195 AEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 195 A~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.....-++...+..++.+.+.|-
T Consensus 171 ~~~~~~d~~~~~~~~~~ll~~L~ 193 (194)
T 2g7s_A 171 SARAHGDAATFGAITRPMLERIT 193 (194)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHB
T ss_pred HHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 98773999999999999997564
No 380
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=57.95 E-value=1.6 Score=21.31 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=7.1
Q ss_pred CCCHHHHHHHHHHHHH
Q ss_conf 9998899999999999
Q gi|254780693|r 199 GLSVHTVNAYLGSATV 214 (235)
Q Consensus 199 ~iS~~TV~~hl~~i~~ 214 (235)
.++...++..++++.+
T Consensus 217 ~~~~~~l~~~~~~~~~ 232 (237)
T 3kkd_A 217 QLAVDEMRAILRRYLN 232 (237)
T ss_dssp GCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 8999999999999999
No 381
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.66 E-value=7.6 Score=16.52 Aligned_cols=26 Identities=8% Similarity=0.144 Sum_probs=22.4
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 78999994999889999999999980
Q gi|254780693|r 191 SEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 191 ~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
-+++|..|+++++.|+.-..|-++|.
T Consensus 43 ~~~La~~~gL~~~~V~~WFqNrR~k~ 68 (89)
T 2dmp_A 43 LDRLRVETKLSRREIDSWFSERRKLR 68 (89)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999995989999999899999868
No 382
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.83A {Rhodopseudomonas palustris CGA009} SCOP: a.35.1.13
Probab=57.51 E-value=7.6 Score=16.50 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=35.0
Q ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 9879997899999499988999999999998079978999999997699
Q gi|254780693|r 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 (235)
Q Consensus 185 ~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gl 233 (235)
-..|.|-+|.|..|||+..+|..-.+- |+.--+-..++..+.++|+
T Consensus 50 ~~~glTQ~eaA~~lGisq~~iS~l~~G---k~~~~Sld~L~~~~~~LG~ 95 (120)
T 2o38_A 50 DRARLSQAAAAARLGINQPKVSALRNY---KLEGFSVERLMTLLNALDQ 95 (120)
T ss_dssp HHTTCCHHHHHHHHTCCHHHHHHHHTT---CCTTCCHHHHHHHHHHTTE
T ss_pred HHCCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCCHHHHHHHHHHCCC
T ss_conf 986996755655508888998999758---8678889999999998599
No 383
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=57.22 E-value=7.7 Score=16.47 Aligned_cols=45 Identities=11% Similarity=0.101 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHH-CC-C-----CHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 49989999999998-79-9-----9789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAG-DG-Y-----TSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a-~G-~-----t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
..|+.+.+||+-.= .. . .-.+||..||++++.|+...+|=+.|--
T Consensus 6 ~~t~~~~~iLe~~f~~~~~~P~~~~~~~La~~lgl~~~qV~~WF~NrR~k~r 57 (64)
T 1x2m_A 6 SGTAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEK 57 (64)
T ss_dssp CCSSCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHCCCC
T ss_conf 8985899999999988589929999999999949898998880585454479
No 384
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=57.10 E-value=7.8 Score=16.45 Aligned_cols=45 Identities=20% Similarity=0.170 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 499899999999987------999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.+|+.+.++|.-.=. ...-.++|..||++++.|+.-..|-+.|+-
T Consensus 19 ~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qVkvWFqNrRak~k 69 (77)
T 1puf_A 19 PYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMK 69 (77)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999999999998779999999999999909987886797388889999
No 385
>2qko_A Possible transcriptional regulator, TETR family protein; structural genomics, PSI-2, protein structure initiative; 2.35A {Rhodococcus SP}
Probab=56.98 E-value=3.9 Score=18.60 Aligned_cols=13 Identities=0% Similarity=-0.041 Sum_probs=4.8
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+.+..+.+.-.||
T Consensus 34 l~AA~~l~~~~G~ 46 (215)
T 2qko_A 34 VNAAIEVLAREGA 46 (215)
T ss_dssp HHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999998591
No 386
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=56.89 E-value=7.8 Score=16.43 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=31.3
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 9987999789999949998899999999999807997899999999769
Q gi|254780693|r 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~G 232 (235)
....|+|-+++|..+|||..|+...-+.- .-.+-..+..+|-.+|
T Consensus 77 R~~~glTQ~elA~~~gis~~~is~iE~G~----~~ps~~~l~kia~~lg 121 (141)
T 3kxa_A 77 RMKKGFTQSELATAAGLPQPYLSRIENSK----QSLQDKTVQKLANALG 121 (141)
T ss_dssp HHHTTCCHHHHHHHTTCCHHHHHHHHHTC----SCCCHHHHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHC
T ss_conf 99829989999999896999999998799----7899999999999949
No 387
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=56.79 E-value=1.9 Score=20.89 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHCCCCHHHHHHHHCC-CHHHHH
Q ss_conf 4998999999999879997899999499-988999
Q gi|254780693|r 173 NLTERETSCLQLAGDGYTSEEIAEKLGL-SVHTVN 206 (235)
Q Consensus 173 ~LT~RE~evL~l~a~G~t~~eIA~~L~i-S~~TV~ 206 (235)
.+|+.-.+.++++++-.+.+.+...... |...++
T Consensus 279 ~~s~~~~~fi~~~~~~l~r~~~~~~~~~~~~~~~~ 313 (324)
T 1al3_A 279 FLRSYMYDFIQRFAPHLTRDVVDTAVALRSNEDIE 313 (324)
T ss_dssp CCCHHHHHHHHHHCTTCCHHHHHHHHHCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHH
T ss_conf 56999999999999874799898775079979999
No 388
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=56.71 E-value=7.9 Score=16.41 Aligned_cols=11 Identities=9% Similarity=-0.040 Sum_probs=4.8
Q ss_pred CHHHHHHHHHH
Q ss_conf 98999999999
Q gi|254780693|r 175 TERETSCLQLA 185 (235)
Q Consensus 175 T~RE~evL~l~ 185 (235)
+.++.++.-+.
T Consensus 282 ~~~~~d~~m~~ 292 (332)
T 3i53_A 282 AGTGMDLRMLT 292 (332)
T ss_dssp CCHHHHHHHHH
T ss_pred CCCHHHHHHHH
T ss_conf 42044599998
No 389
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=56.18 E-value=8 Score=16.35 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999789999949998899999999999
Q gi|254780693|r 188 GYTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 188 G~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
..|.++||..+|+|..||...++...+
T Consensus 146 ~~t~~~iA~~lg~sr~tv~r~l~~L~~ 172 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAR 172 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 887999998979889999999999998
No 390
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=55.90 E-value=8.1 Score=16.32 Aligned_cols=12 Identities=8% Similarity=0.036 Sum_probs=4.7
Q ss_pred HHHHHHHCCCCE
Q ss_conf 999998583785
Q gi|254780693|r 22 HLIQNRIKARNF 33 (235)
Q Consensus 22 ~~l~~~~~~~~f 33 (235)
..+.+.+-..++
T Consensus 70 ~rlLr~L~~~Gl 81 (360)
T 1tw3_A 70 LRLIRHLVAIGL 81 (360)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHCCE
T ss_conf 999999986796
No 391
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=55.71 E-value=8.2 Score=16.30 Aligned_cols=37 Identities=30% Similarity=0.383 Sum_probs=26.6
Q ss_pred CCHHHHHHHH--HHHCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 9989999999--998799978999994999889999999
Q gi|254780693|r 174 LTERETSCLQ--LAGDGYTSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 174 LT~RE~evL~--l~a~G~t~~eIA~~L~iS~~TV~~hl~ 210 (235)
|..-|++++. |-..|..-...|+.||||..|....++
T Consensus 265 L~~~E~~~I~~aL~~~~gn~~~aA~~LGisR~tLyrklk 303 (304)
T 1ojl_A 265 LVDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLS 303 (304)
T ss_dssp HHHHHHHHHHHHHHTTTTCHHHHHHHHTSCHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHC
T ss_conf 999999999999999299899999998889999999867
No 392
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=55.42 E-value=8.2 Score=16.27 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHH-CC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 449989999999998-79-----99789999949998899999999999807
Q gi|254780693|r 172 RNLTERETSCLQLAG-DG-----YTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 172 ~~LT~RE~evL~l~a-~G-----~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
..+|+-+.++|+-.= .. ..-.+||..|++++..|+.-..|-+.|.-
T Consensus 12 t~~t~~q~~~Le~~F~~~~~P~~~~~~~La~~~~l~~~qV~~WF~NrR~r~k 63 (70)
T 2da1_A 12 TRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKER 63 (70)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 8899999999999999759989999999999979199998897798888650
No 393
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.79 E-value=8.4 Score=16.20 Aligned_cols=25 Identities=16% Similarity=0.332 Sum_probs=21.7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 7899999499988999999999998
Q gi|254780693|r 191 SEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 191 ~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
-.+||..++++++.|+.-..|-+.|
T Consensus 33 ~~~LA~~~~l~~~qV~~WFqNrRak 57 (64)
T 2e19_A 33 LSKIADSVNLPLDVVKKWFEKMQAG 57 (64)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf 9999999880989945840400126
No 394
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia}
Probab=54.74 E-value=5.9 Score=17.33 Aligned_cols=19 Identities=0% Similarity=-0.163 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHCCCCE
Q ss_conf 9999999999998583785
Q gi|254780693|r 15 QELSPRLHLIQNRIKARNF 33 (235)
Q Consensus 15 ~dl~~~l~~l~~~~~~~~f 33 (235)
+.+......+-..-++.+.
T Consensus 14 ~~Il~aA~~l~~~~G~~~~ 32 (219)
T 2w53_A 14 EGILDAAEACFHEHGVART 32 (219)
T ss_dssp HHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHHHHHCCCCC
T ss_conf 9999999999998592408
No 395
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1}
Probab=54.59 E-value=8.5 Score=16.17 Aligned_cols=10 Identities=10% Similarity=0.072 Sum_probs=3.6
Q ss_pred HHHHHCCCCE
Q ss_conf 9998583785
Q gi|254780693|r 24 IQNRIKARNF 33 (235)
Q Consensus 24 l~~~~~~~~f 33 (235)
+.+.+-..++
T Consensus 61 lL~~L~~~gl 70 (334)
T 2ip2_A 61 LMRLLVAFEI 70 (334)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHCCC
T ss_conf 9999996897
No 396
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=54.30 E-value=2.9 Score=19.49 Aligned_cols=21 Identities=5% Similarity=-0.107 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHHHHHCCCCE
Q ss_conf 599999999999998583785
Q gi|254780693|r 13 SLQELSPRLHLIQNRIKARNF 33 (235)
Q Consensus 13 sl~dl~~~l~~l~~~~~~~~f 33 (235)
+=+.+......+-..-++.+.
T Consensus 7 tR~~Il~aa~~l~~~~G~~~~ 27 (191)
T 1sgm_A 7 SREKILHTASRLSQLQGYHAT 27 (191)
T ss_dssp HHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999998392507
No 397
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=54.27 E-value=5 Score=17.83 Aligned_cols=16 Identities=6% Similarity=0.136 Sum_probs=7.1
Q ss_pred CCHHH-HHHHHHHHCCC
Q ss_conf 99899-99999998799
Q gi|254780693|r 174 LTERE-TSCLQLAGDGY 189 (235)
Q Consensus 174 LT~RE-~evL~l~a~G~ 189 (235)
.++.+ .++|+-+++-+
T Consensus 281 ~~d~~~~~iL~~~~~aL 297 (369)
T 3gwz_A 281 WDDDDVVRILRRIATAM 297 (369)
T ss_dssp SCHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHC
T ss_conf 88289999999999965
No 398
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=54.25 E-value=8.6 Score=16.14 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=23.1
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 789999949998899999999999807
Q gi|254780693|r 191 SEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 191 ~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
-.+||..|+++++.|+.-..|-+.|.-
T Consensus 39 ~~~LA~~~~l~~~qV~~WF~NrR~k~k 65 (72)
T 2cqx_A 39 LKGLSKQLDWSVRKIQCWFRHRRNQDK 65 (72)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 999999979499999999998687557
No 399
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=54.25 E-value=8.6 Score=16.14 Aligned_cols=13 Identities=8% Similarity=0.337 Sum_probs=5.3
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+..+.+.+...++
T Consensus 81 l~rlL~~L~~~Gl 93 (359)
T 1x19_A 81 LEMLLETLRQMRV 93 (359)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999997795
No 400
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum}
Probab=53.89 E-value=8.7 Score=16.10 Aligned_cols=10 Identities=10% Similarity=0.368 Sum_probs=4.0
Q ss_pred CCCHHHHHHH
Q ss_conf 9997899999
Q gi|254780693|r 188 GYTSEEIAEK 197 (235)
Q Consensus 188 G~t~~eIA~~ 197 (235)
..|-.++...
T Consensus 137 ~~TL~dL~~~ 146 (162)
T 3k69_A 137 QFTMADLQAD 146 (162)
T ss_dssp TCBHHHHHHH
T ss_pred CCCHHHHHHH
T ss_conf 7979999998
No 401
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, protein structure initiative; 2.19A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
Probab=53.34 E-value=5.4 Score=17.58 Aligned_cols=13 Identities=8% Similarity=0.003 Sum_probs=5.3
Q ss_pred HHHHHHHHCCCCE
Q ss_conf 9999998583785
Q gi|254780693|r 21 LHLIQNRIKARNF 33 (235)
Q Consensus 21 l~~l~~~~~~~~f 33 (235)
+.+..+.+.-.||
T Consensus 18 l~aA~~l~~~~G~ 30 (200)
T 2hyj_A 18 LGRAAEIASEEGL 30 (200)
T ss_dssp HHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999997391
No 402
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=53.11 E-value=8.9 Score=16.01 Aligned_cols=47 Identities=17% Similarity=0.144 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHH-C-CC-----CHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 74449989999999998-7-99-----978999994999889999999999980
Q gi|254780693|r 170 AARNLTERETSCLQLAG-D-GY-----TSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 170 ~~~~LT~RE~evL~l~a-~-G~-----t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
....+|+-+.++|+-.= . .. .-++||..||++++.|+.-..|=+.|+
T Consensus 5 ~rt~~T~~Ql~~Le~~F~~~n~yP~~~~r~~LA~~lgl~~~~V~~WFqNrRak~ 58 (73)
T 2hi3_A 5 TVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEW 58 (73)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHH
T ss_conf 689999999999999998858993999999999995998778645439871888
No 403
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, PSI, protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=52.56 E-value=9.1 Score=15.95 Aligned_cols=30 Identities=13% Similarity=0.057 Sum_probs=11.6
Q ss_pred CCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 5358997216887523454105887899899999
Q gi|254780693|r 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148 (235)
Q Consensus 115 ~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (235)
.+|+....+++ | |+ .++..-......++..
T Consensus 56 kaGlv~s~rG~-G--Gy-~L~r~p~~ItL~dI~~ 85 (149)
T 1ylf_A 56 QAGFVYVNRGP-G--GA-GLLKDLHEITLLDVYH 85 (149)
T ss_dssp HTTSEEEC----C--CE-EESSCGGGCBHHHHHH
T ss_pred HCCCEEEECCC-C--CC-EECCCHHHCCHHHHHH
T ss_conf 88986731699-9--85-3048875558999999
No 404
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=52.50 E-value=6.2 Score=17.14 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=31.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999999879997899999499988999999999998
Q gi|254780693|r 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 177 RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
|+-=+..+-..|.|-.+|++..|+|..|+++-+.+-+.|
T Consensus 11 ~adI~AaL~krG~sLa~lsr~~Gls~~tl~nal~rp~pk 49 (74)
T 1neq_A 11 RADVIAGLKKRKLSLSALSRQFGYAPTTLANALERHWPK 49 (74)
T ss_dssp HHHHHHHHHTTSCCHHHHHHHHSSCHHHHHHTTTSSCHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCH
T ss_conf 999999999968969999999099889999988277807
No 405
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structural genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.4 b.82.3.2
Probab=52.48 E-value=9.1 Score=15.95 Aligned_cols=41 Identities=10% Similarity=0.076 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHC-----------CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99899999999987-----------9997899999499988999999999998
Q gi|254780693|r 174 LTERETSCLQLAGD-----------GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 174 LT~RE~evL~l~a~-----------G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.|.+++ ++.++.+ -.+.++||..+|+|..||..-++...++
T Consensus 162 ~~~~~r-i~~~L~~~~~~~~~~~~~~~~~~~lA~~~g~sr~tv~R~L~~L~~~ 213 (232)
T 1zyb_A 162 LDLKSK-IIRFFLSHCEKPQGEKTFKVKMDDLARCLDDTRLNISKTLNELQDN 213 (232)
T ss_dssp CSHHHH-HHHHHHTTCSSSSSCEEEECCHHHHHHHHTSCHHHHHHHHHHHHHT
T ss_pred CCHHHH-HHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 899999-9999998603423343467899999989798999999999999988
No 406
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=51.89 E-value=3.1 Score=19.29 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=31.8
Q ss_pred HHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999999987999789999949998899999999999807
Q gi|254780693|r 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 178 E~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
..++.+|+.+|++-.++-+-|+|+.+.|+.- ++|.+-+-
T Consensus 8 ~~eI~~Lm~~GYs~~~v~rAL~Ia~NniemA-~~ILrEFv 46 (56)
T 2juj_A 8 SSEIENLMSQGYSYQDIQKALVIAQNNIEMA-KNILREFV 46 (56)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTTTCSHHH-HHHHHHSC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH-HHHHHHHC
T ss_conf 2899999985544999999999987119999-99999982
No 407
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=51.64 E-value=8.6 Score=16.13 Aligned_cols=12 Identities=8% Similarity=0.210 Sum_probs=4.7
Q ss_pred HHHHHHHCCCCE
Q ss_conf 999998583785
Q gi|254780693|r 22 HLIQNRIKARNF 33 (235)
Q Consensus 22 ~~l~~~~~~~~f 33 (235)
..+.+.+...++
T Consensus 73 ~rlLr~L~~~Gl 84 (348)
T 3lst_A 73 RRVLRLLAVRDV 84 (348)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHCCC
T ss_conf 999999997898
No 408
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=51.47 E-value=2.5 Score=19.91 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=29.3
Q ss_pred HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 999987999789999949998899999999999807
Q gi|254780693|r 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 182 L~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.++.-...|-++||...+||+.|++...+.++..+.
T Consensus 286 ~~~~~~~~t~~~Ia~~~~vs~~TI~~~ykeL~~~~~ 321 (345)
T 3k7a_M 286 ILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp ------------------------------------
T ss_pred HHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999687989999998859879999999999999999
No 409
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=51.39 E-value=9.5 Score=15.83 Aligned_cols=44 Identities=16% Similarity=0.205 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHC--C----CCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 99899999999987--9----99789999949998899999999999807
Q gi|254780693|r 174 LTERETSCLQLAGD--G----YTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 174 LT~RE~evL~l~a~--G----~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
+|+-+.++|.-.=+ - ..-.+||..||+++++|+.-..|-+.|.-
T Consensus 100 ~~~~q~~~Le~~f~~~~~P~~~~~~~lA~~l~l~~~~V~~WF~NrR~k~K 149 (151)
T 3d1n_I 100 FTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLK 149 (151)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHC
T ss_conf 78679999999997069969999999999978498881360276530111
No 410
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=50.41 E-value=3.5 Score=18.93 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=9.1
Q ss_pred CCCCHHHH--HHHHHHHCCC
Q ss_conf 44998999--9999998799
Q gi|254780693|r 172 RNLTERET--SCLQLAGDGY 189 (235)
Q Consensus 172 ~~LT~RE~--evL~l~a~G~ 189 (235)
..+|+.|. +++.++..|.
T Consensus 178 ~~~s~e~la~~~~~~~l~G~ 197 (203)
T 3ccy_A 178 GSVSPDALAERTVQLFLDGY 197 (203)
T ss_dssp SSSCHHHHHHHHHHHHHHCG
T ss_pred CCCCHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999
No 411
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=50.32 E-value=1.4 Score=21.70 Aligned_cols=15 Identities=13% Similarity=0.359 Sum_probs=6.3
Q ss_pred HHHHHHHHHHCC-CCE
Q ss_conf 999999998583-785
Q gi|254780693|r 19 PRLHLIQNRIKA-RNF 33 (235)
Q Consensus 19 ~~l~~l~~~~~~-~~f 33 (235)
..+.+..+.+.. .||
T Consensus 15 ~IL~AA~~l~~~e~G~ 30 (220)
T 3lsj_A 15 ALMSAARHLMESGRGF 30 (220)
T ss_dssp HHHHHHHHHTTTSCCG
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 9999999999875992
No 412
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=50.04 E-value=9.9 Score=15.69 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=31.0
Q ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCC
Q ss_conf 9987999789999949998899999999999807997899999999769
Q gi|254780693|r 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 (235)
Q Consensus 184 l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~G 232 (235)
.-..|.|..+.|...|||..|+...... |-...+...+...|-.+|
T Consensus 16 r~~~gls~~~LA~~~Gis~~tis~~e~g---~~~~p~~~~l~kia~~l~ 61 (78)
T 3b7h_A 16 ITQQNLTINRVATLAGLNQSTVNAMFEG---RSKRPTITTIRKVCGTLG 61 (78)
T ss_dssp HHHTTCCHHHHHHHHTCCHHHHHHHHCT---TCCCCCHHHHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCHHHHHHHHHHHHC
T ss_conf 9993998999999889399999999869---988968999999999989
No 413
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482}
Probab=49.80 E-value=10 Score=15.66 Aligned_cols=10 Identities=0% Similarity=-0.197 Sum_probs=3.7
Q ss_pred HHHHHCCCCE
Q ss_conf 9998583785
Q gi|254780693|r 24 IQNRIKARNF 33 (235)
Q Consensus 24 l~~~~~~~~f 33 (235)
+.+.+...++
T Consensus 70 lL~~L~~~g~ 79 (363)
T 3dp7_A 70 LLEASLTIGT 79 (363)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHCCE
T ss_conf 9999985891
No 414
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102}
Probab=49.36 E-value=10 Score=15.62 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=3.4
Q ss_pred HHHHHCCCCE
Q ss_conf 9998583785
Q gi|254780693|r 24 IQNRIKARNF 33 (235)
Q Consensus 24 l~~~~~~~~f 33 (235)
+.+.+...++
T Consensus 59 lL~~L~~~gl 68 (335)
T 2r3s_A 59 LCDYLVIIGF 68 (335)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHCCC
T ss_conf 9999987892
No 415
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=49.32 E-value=10 Score=15.61 Aligned_cols=35 Identities=20% Similarity=0.163 Sum_probs=18.2
Q ss_pred HHHHHHHHCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 9999999879---9978999994999889999999999980
Q gi|254780693|r 179 TSCLQLAGDG---YTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 179 ~evL~l~a~G---~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
..+..++.+| +|..+||...|.+-. .|..+.++|.
T Consensus 57 ~~a~~lL~~~~~~~si~~Ia~~~Gf~~~---s~F~r~Fk~~ 94 (108)
T 3mn2_A 57 QHAHNLLSDGATPTTVTAAALSCGFSNL---GHFARDYRDM 94 (108)
T ss_dssp HHHHHHHHSSSSCCCHHHHHHHTTCCCH---HHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHCCCCH---HHHHHHHHHH
T ss_conf 9999998765888639999999289988---9999999998
No 416
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=49.30 E-value=10 Score=15.61 Aligned_cols=23 Identities=4% Similarity=-0.054 Sum_probs=10.5
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 77899962487444120879999
Q gi|254780693|r 57 YDLDSGDIPNILIETYGDDFLFH 79 (235)
Q Consensus 57 ~~~~~~~~~~~~~~~~~dp~~~~ 79 (235)
+...++..|...-....++++..
T Consensus 49 ~~~g~lr~ya~~L~ld~~~ll~~ 71 (130)
T 3fym_A 49 YSEGFIRKYASVVNIEPNQLIQA 71 (130)
T ss_dssp GHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999999999939599999999
No 417
>1ocp_A OCT-3; DNA-binding protein; NMR {Mus musculus} SCOP: a.4.1.1
Probab=49.24 E-value=10 Score=15.60 Aligned_cols=45 Identities=20% Similarity=0.142 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 499899999999987------999789999949998899999999999807
Q gi|254780693|r 173 NLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 173 ~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
.+|+-+.++|.-.=. ...-.+||..||+++..|+.-..|-+.|.-
T Consensus 14 ~~t~~q~~~Le~~F~~~~~P~~~~~~~LA~~~~l~~~~V~~WFqNrR~k~K 64 (67)
T 1ocp_A 14 SIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGK 64 (67)
T ss_dssp SCCHHHHHHHHHHHSSCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHSSSS
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 899999999999984369979999999999958998897796188877774
No 418
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls}
Probab=48.69 E-value=10 Score=15.54 Aligned_cols=140 Identities=11% Similarity=-0.039 Sum_probs=61.7
Q ss_pred HCCHHHHHHHH-HHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEE
Q ss_conf 22599999999-99999858378589984177787310250442278778999624874441208799999617998373
Q gi|254780693|r 11 SSSLQELSPRL-HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIW 89 (235)
Q Consensus 11 ~~sl~dl~~~l-~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~~~ 89 (235)
..+++++...+ ..+.+.++++...++.++....... -.........+. ... .......++..........|...
T Consensus 18 ~~d~~~l~~~i~~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~ 92 (177)
T 3k2n_A 18 IRDPQELFRTVTDKLRLLFAFDSAVIITIDRERREAS-VFFEMLRFELPE-QLR---HQTRSIAGTWLEGHLDDRTVTVA 92 (177)
T ss_dssp CCSHHHHHHHHHHHHTTTCCCSEEEEEEEETTTTEEE-EEEEECSSCCCS-TTC---CSEEECTTSGGGGGTTCCSCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEE-EEEEEECCCCHH-HHC---CCCCCCCCCHHHHHHHCCCEEEE
T ss_conf 4999999999999999982988899999957876899-999970566714-430---22456553368999716834885
Q ss_pred CCHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEECCCCC-CCCHHHHHHHHHHHHH
Q ss_conf 10133146672136789965425855358997216887523454105887-8998999999999999
Q gi|254780693|r 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-MLANEVIIEAHGACYQ 155 (235)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 155 (235)
.......................|.++.+++|+..+..-.|.+.+..... ....+++..+..++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~g~~s~l~vPl~~~~~~~G~l~~~~~~~~~f~~~~~~ll~~la~~ 159 (177)
T 3k2n_A 93 SIARDIPSFGADGAPLLWTLHELGMRQIVLSPLRSGGRVIGFLSFVSAEEKLWSDGDKSLLSGVSSS 159 (177)
T ss_dssp ETTTTCTTTTTTTCHHHHHHHHHTCCEEEEEEEEETTEEEEEEEEEESSCCCCCHHHHHHHHHHHHH
T ss_pred ECCCCHHHHCCCCHHHHHHHHHHCCEEEEEEEEEECCEEEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 0421045431562577888875188299999999899018999998556789999999999999999
No 419
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, PSI-2, protein structure initiative; 1.80A {Cytophaga hutchinsonii atcc 33406}
Probab=47.87 E-value=3.1 Score=19.26 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 99978999994999889999999999980
Q gi|254780693|r 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 188 G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
-.|.++||..||+|+.|+. ++++||
T Consensus 168 ~~t~~~iA~~lG~sr~tlS----Ri~k~l 192 (194)
T 3dn7_A 168 RVPQYLLASYLGFTPEYLS----EIRKKY 192 (194)
T ss_dssp -----------------------------
T ss_pred CCCHHHHHHHHCCCHHHHH----HHHHHH
T ss_conf 9799999999799899999----999986
No 420
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=46.49 E-value=11 Score=15.31 Aligned_cols=38 Identities=29% Similarity=0.394 Sum_probs=30.0
Q ss_pred HHHHHHHH-HCC--CCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 99999999-879--997899999499988999999999998
Q gi|254780693|r 178 ETSCLQLA-GDG--YTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 178 E~evL~l~-a~G--~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
-..|++.+ ..| .+.++||..+++..+.|+..+..+...
T Consensus 20 a~~i~~~L~~~~~~l~ee~la~~~~i~~k~vR~iL~~L~~~ 60 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQ 60 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999999985887789999989499999999999999987
No 421
>2np3_A Putative TETR-family regulator; transcriptional regulator, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.35A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=45.89 E-value=3.5 Score=18.91 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=15.0
Q ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 9862259999999999999858378589984
Q gi|254780693|r 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTI 38 (235)
Q Consensus 8 ~~~~~sl~dl~~~l~~l~~~~~~~~f~~~~~ 38 (235)
+++..+-+.-...+.+..+.+.-.||.-..+
T Consensus 23 ~R~~~~~~tR~~Il~aA~~l~~~~G~~~~T~ 53 (212)
T 2np3_A 23 GRRPGETRTREAILTAARVCFAERGFDATSL 53 (212)
T ss_dssp ------------CHHHHHHHC----------
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 9999816899999999999999849130679
No 422
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown function, protein structure initiative; NMR {Bacteroides fragilis nctc 9343}
Probab=45.00 E-value=12 Score=15.16 Aligned_cols=46 Identities=24% Similarity=0.240 Sum_probs=31.2
Q ss_pred CCCCCHHHHHH-HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 44499899999-99998799978999994999889999999999980799789999999976999
Q gi|254780693|r 171 ARNLTERETSC-LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 171 ~~~LT~RE~ev-L~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gli 234 (235)
...+|+.-.+- ..|+. ..-++|++||+.|++.+.. ..-+|++.|+|
T Consensus 49 ~~~it~~~i~~f~~~l~---------~~~~~s~~Ti~~~l~~lr~---------~~~~A~~~g~i 95 (112)
T 2key_A 49 FHELTEDFLRDYLIYMK---------KTLCNADSTAQRNLSTIKI---------YVSAAIKKGYM 95 (112)
T ss_dssp TTTCCHHHHHHHHHHHH---------HTSCCCHHHHHHHHHHHHH---------HHHHHHHTTSC
T ss_pred HHHCCHHHHHHHHHHHH---------HHCCCCHHHHHHHHHHHHH---------HHHHHHHCCCC
T ss_conf 89869998999999998---------7327770366999999999---------99999988794
No 423
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=44.94 E-value=12 Score=15.15 Aligned_cols=23 Identities=17% Similarity=-0.044 Sum_probs=12.7
Q ss_pred HHHHHH-HCCCCHHHHHHHHCCCH
Q ss_conf 999999-87999789999949998
Q gi|254780693|r 180 SCLQLA-GDGYTSEEIAEKLGLSV 202 (235)
Q Consensus 180 evL~l~-a~G~t~~eIA~~L~iS~ 202 (235)
.+..++ -.+++-.+||..+|-+-
T Consensus 61 ~a~~~L~~~~~~i~~IA~~~Gf~~ 84 (108)
T 3oou_A 61 YAKEELLQTKDNLTIIAGKSGYTD 84 (108)
T ss_dssp HHHHHHHHCCCCHHHHHHHTTCCC
T ss_pred HHHHHHHCCCCHHHHHHHHHCCCC
T ss_conf 789862045545999999929998
No 424
>2qco_A CMER; transcriptional regulator protein; 2.25A {Campylobacter jejuni} PDB: 3hgg_A* 3hgy_A*
Probab=44.31 E-value=1.5 Score=21.57 Aligned_cols=12 Identities=17% Similarity=0.157 Sum_probs=5.3
Q ss_pred HHHHHHHCCCCH
Q ss_conf 999999879997
Q gi|254780693|r 180 SCLQLAGDGYTS 191 (235)
Q Consensus 180 evL~l~a~G~t~ 191 (235)
.++.++-.|...
T Consensus 196 ~~v~~~l~Gi~~ 207 (210)
T 2qco_A 196 FVVNVFLNGINS 207 (210)
T ss_dssp HHHHHHHTCSCC
T ss_pred HHHHHHHCCCCC
T ss_conf 999999766486
No 425
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=43.41 E-value=4.3 Score=18.30 Aligned_cols=12 Identities=0% Similarity=0.390 Sum_probs=4.4
Q ss_pred HHHHHHHCCCCE
Q ss_conf 999998583785
Q gi|254780693|r 22 HLIQNRIKARNF 33 (235)
Q Consensus 22 ~~l~~~~~~~~f 33 (235)
.+..+.+.-.||
T Consensus 20 ~aA~~l~~~~G~ 31 (217)
T 3nrg_A 20 DVLLDEFAQNDY 31 (217)
T ss_dssp HHHHHHHHHSCG
T ss_pred HHHHHHHHHHCC
T ss_conf 999999997392
No 426
>3eup_A Transcriptional regulator, TETR family; structural genomics, PSI2, MCSG, protein structure initiative; 1.99A {Cytophaga hutchinsonii atcc 33406}
Probab=42.89 E-value=5.6 Score=17.46 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 89999999999980799
Q gi|254780693|r 203 HTVNAYLGSATVKLDAV 219 (235)
Q Consensus 203 ~TV~~hl~~i~~KLg~~ 219 (235)
.++..++.++..=+.+.
T Consensus 186 ~~~~~~l~~~l~gl~~~ 202 (204)
T 3eup_A 186 DYVFESLEDLIAGIEVK 202 (204)
T ss_dssp HHHHHHHHHHHHTTBCC
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 99999999999763717
No 427
>2fd5_A Transcriptional regulator; DNA-binding protein, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=42.52 E-value=6.1 Score=17.21 Aligned_cols=18 Identities=6% Similarity=-0.265 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHCCCCEE
Q ss_conf 999999999985837858
Q gi|254780693|r 17 LSPRLHLIQNRIKARNFA 34 (235)
Q Consensus 17 l~~~l~~l~~~~~~~~f~ 34 (235)
+......+-..-++++..
T Consensus 12 il~aa~~l~~~~G~~~~s 29 (180)
T 2fd5_A 12 ILGAATQALLERGAVEPS 29 (180)
T ss_dssp HHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHCCCCCC
T ss_conf 999999999870944067
No 428
>3cec_A Putative antidote protein of plasmid maintenance system; ZP_00107635.1, structural genomics, joint center for structural genomics; HET: MSE; 1.60A {Nostoc punctiforme pcc 73102}
Probab=42.35 E-value=13 Score=14.88 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=24.8
Q ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 99987999789999949998899999999
Q gi|254780693|r 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 183 ~l~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
.+-..|.|-.+.|..+|||+.|+..+.+.
T Consensus 26 ~~~~~gisq~eLA~~lGvs~~~is~~e~G 54 (104)
T 3cec_A 26 ILDDLDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HHHHHTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHCCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 99987998999999978378999999758
No 429
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=42.12 E-value=13 Score=14.86 Aligned_cols=44 Identities=23% Similarity=0.189 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHC------CCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 499899999999987------99978999994999889999999999980
Q gi|254780693|r 173 NLTERETSCLQLAGD------GYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 173 ~LT~RE~evL~l~a~------G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
.+|+.+.++|.-.=. ...-.++|..||+|+..|+.-..|-+.|.
T Consensus 9 ~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~ 58 (68)
T 1yz8_P 9 HFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKW 58 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999999999999866999999999999994929899789328778999
No 430
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription/DNA complex; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=42.10 E-value=13 Score=14.86 Aligned_cols=39 Identities=18% Similarity=0.213 Sum_probs=29.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 9999999998799978999994999889999999999980
Q gi|254780693|r 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 177 RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
-|..+|+-++. ...+.+|..+|+++.||..--..-+.|+
T Consensus 14 IEs~iL~rla~-~Gq~~vA~~~Gv~eStISRwK~~~~~k~ 52 (83)
T 1zs4_A 14 IESALLNKIAM-LGTEKTAEAVGVDKSQISRWKRDWIPKF 52 (83)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHH-HCCHHHHHHHCCCHHHHHHHCCCHHHHH
T ss_conf 99999999998-5529999996998999873013479999
No 431
>2iu5_A DHAS, hypothetical protein YCEG; synthase, activator, TETR family, dihydroxyacetone; 1.6A {Lactococcus lactis subsp} SCOP: a.4.1.9 a.121.1.1
Probab=41.59 E-value=5.4 Score=17.57 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=8.1
Q ss_pred HHHHHCCCCHHHHHHH
Q ss_conf 9999879997899999
Q gi|254780693|r 182 LQLAGDGYTSEEIAEK 197 (235)
Q Consensus 182 L~l~a~G~t~~eIA~~ 197 (235)
..|+.+|.+.+++...
T Consensus 158 ~~~l~~~~~~e~~~~~ 173 (195)
T 2iu5_A 158 RESIIRGNSLEKLYSQ 173 (195)
T ss_dssp HHHHHHTCCSGGGHHH
T ss_pred HHHHHCCCCHHHHHHH
T ss_conf 9998839697899999
No 432
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural genomics, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=41.43 E-value=4.5 Score=18.12 Aligned_cols=28 Identities=14% Similarity=0.156 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9997899999499988999999999998
Q gi|254780693|r 188 GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 188 G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
-.|.++||..+|+|+.||+.-++...++
T Consensus 164 ~~t~~~iA~~lg~sr~tvsr~l~~L~~~ 191 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALSRVFQELERE 191 (213)
T ss_dssp ----------------------------
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 5689999999798999999999999978
No 433
>3bwg_A Uncharacterized HTH-type transcriptional regulator YYDK; APC85486, structural genomics, PSI-2, protein structure initiative; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=40.94 E-value=13 Score=14.74 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=10.0
Q ss_pred CCHHCCHHHHCCHHHHHHHHHHHH
Q ss_conf 700211986225999999999999
Q gi|254780693|r 2 SENTLTGKKSSSLQELSPRLHLIQ 25 (235)
Q Consensus 2 ~~~~~~~~~~~sl~dl~~~l~~l~ 25 (235)
||.+|..+=.-|-..+...+..|.
T Consensus 31 sE~~La~~~~VSR~TvR~Al~~L~ 54 (239)
T 3bwg_A 31 VLETLMAQFEVSKSTITKSLELLE 54 (239)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 699999998959999999999999
No 434
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=40.50 E-value=14 Score=14.69 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=18.4
Q ss_pred HHHHHHHHC-CCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 999999987-9997899999499988999999999998
Q gi|254780693|r 179 TSCLQLAGD-GYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 179 ~evL~l~a~-G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
..+..++.. +++-++||..+|-+-. .|..+.++|
T Consensus 66 ~~a~~~L~~~~~si~~IA~~~Gf~~~---s~F~r~Fk~ 100 (129)
T 1bl0_A 66 TEIAQKLKESNEPILYLAERYGFESQ---QTLTRTFKN 100 (129)
T ss_dssp HHHHHHHHHCCCCHHHHHHHTTCSCH---HHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCH---HHHHHHHHH
T ss_conf 99999987679999999999689987---899999999
No 435
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=40.17 E-value=14 Score=14.66 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=27.8
Q ss_pred HHHHHHHHCC--CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999999879--99789999949998899999999999
Q gi|254780693|r 179 TSCLQLAGDG--YTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 179 ~evL~l~a~G--~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
.+++.++-+. .|.++++..+++|..|++..++....
T Consensus 300 ~~ll~~l~~~p~~t~~~~~~~~~vs~~Ta~~~l~~L~~ 337 (373)
T 2qc0_A 300 HELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCD 337 (373)
T ss_dssp HHHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99999999789843999999869899999999999997
No 436
>1kyz_A COMT, caffeic acid 3-O-methyltransferase; lignin, ferulic acid, methylation; HET: SAH FER; 2.20A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1kyw_A*
Probab=40.11 E-value=14 Score=14.65 Aligned_cols=13 Identities=0% Similarity=-0.118 Sum_probs=4.8
Q ss_pred HHHHHHHCCCCEE
Q ss_conf 9999985837858
Q gi|254780693|r 22 HLIQNRIKARNFA 34 (235)
Q Consensus 22 ~~l~~~~~~~~f~ 34 (235)
..+.+.+-..++.
T Consensus 78 ~rlLr~L~~~gll 90 (365)
T 1kyz_A 78 DRMLRLLACYIIL 90 (365)
T ss_dssp HHHHHHHHHTTSE
T ss_pred HHHHHHHHHCCCE
T ss_conf 9999999965838
No 437
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PSI, protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=40.03 E-value=14 Score=14.64 Aligned_cols=50 Identities=18% Similarity=0.125 Sum_probs=33.4
Q ss_pred HHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 99999879997899999499988999999999998079978999999997699
Q gi|254780693|r 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 (235)
Q Consensus 181 vL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~nR~qava~A~~~Gl 233 (235)
.++-+..|+|-.|.|..+|||..|+..+-+. |....+-.....+|-.+|+
T Consensus 20 ~lr~~R~~~s~~elA~~~gis~~~is~iE~G---~~~~~s~~~l~~ia~~L~v 69 (86)
T 2ofy_A 20 LLRSARGDMSMVTVAFDAGISVETLRKIETG---RIATPAFFTIAAVARVLDL 69 (86)
T ss_dssp HHHHHHTTSCHHHHHHHHTCCHHHHHHHHTT---CCSSCBHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHCCCHHHHHHHHCC---CCCCCHHHHHHHHHHHHCC
T ss_conf 9999998789999999979799999999869---9788759999999999897
No 438
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=38.26 E-value=15 Score=14.45 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=15.2
Q ss_pred HHHHHHHHC-CCCHHHHHHHHCCCHH
Q ss_conf 999999987-9997899999499988
Q gi|254780693|r 179 TSCLQLAGD-GYTSEEIAEKLGLSVH 203 (235)
Q Consensus 179 ~evL~l~a~-G~t~~eIA~~L~iS~~ 203 (235)
..+..++.. +++..+||..+|-+..
T Consensus 61 ~~A~~lL~~~~~~i~~IA~~~Gf~~~ 86 (120)
T 3mkl_A 61 QRALQLIVIHGFSIKRVAVSCGYHSV 86 (120)
T ss_dssp HHHHHHHTSTTCCHHHHHHHTTCSCH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCCH
T ss_conf 99999860565839999999789988
No 439
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural genomics, midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=37.99 E-value=4.8 Score=17.92 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=10.9
Q ss_pred CCHHHH-HHHHHHHHHHCCCCCHH
Q ss_conf 998899-99999999980799789
Q gi|254780693|r 200 LSVHTV-NAYLGSATVKLDAVNRI 222 (235)
Q Consensus 200 iS~~TV-~~hl~~i~~KLg~~nR~ 222 (235)
.++..+ +.++.-+.+=||+..+.
T Consensus 182 ~~~~~~~~~~~~~~l~~l~~~~~~ 205 (211)
T 3him_A 182 SDPRIIAARYVELALRMVGCADRQ 205 (211)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCC--
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999999870888899
No 440
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=37.61 E-value=15 Score=14.39 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=24.0
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 789999949998899999999999807
Q gi|254780693|r 191 SEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 191 ~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
-.+||..||+++.+|+.-..|-++|..
T Consensus 131 ~~~lA~~l~l~~~~v~~WF~NrR~~~k 157 (160)
T 1e3o_C 131 ITLIAEQLNMEKEVIRVWFSNRRQKEK 157 (160)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 999999969498997896287765553
No 441
>1fp2_A Isoflavone O-methytransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=37.30 E-value=15 Score=14.35 Aligned_cols=10 Identities=40% Similarity=0.351 Sum_probs=5.1
Q ss_pred CCHHHHHHHH
Q ss_conf 2599999999
Q gi|254780693|r 12 SSLQELSPRL 21 (235)
Q Consensus 12 ~sl~dl~~~l 21 (235)
-|.+||..++
T Consensus 52 ~t~~eLA~~~ 61 (352)
T 1fp2_A 52 ISLSNLVSIL 61 (352)
T ss_dssp EEHHHHHHHH
T ss_pred CCHHHHHHHH
T ss_conf 6899999985
No 442
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled coil, structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=37.16 E-value=15 Score=14.34 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=29.3
Q ss_pred HHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999999879997899999499988999999999998
Q gi|254780693|r 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 179 ~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
.++|+-+..|-+-..|....++|.++++.|+..+..+
T Consensus 11 ~dIL~~~~~~~~~T~i~~~~nLs~~~~~~yl~~L~~~ 47 (95)
T 1r7j_A 11 QAILEACKSGSPKTRIMYGANLSYALTGRYIKMLMDL 47 (95)
T ss_dssp HHHHHHHTTCBCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 9999997669977599998199999999999999988
No 443
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=37.14 E-value=1.2 Score=22.15 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=11.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHCC
Q ss_conf 999789999949998899999999999807
Q gi|254780693|r 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 (235)
Q Consensus 188 G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 217 (235)
|+|-.|||.+||-|...|-.--++++++..
T Consensus 5 G~tQ~eIA~~LgTSraNVs~IEk~A~eNIe 34 (122)
T 1nr3_A 5 GWSQKKIARELKTTRQNVSAIERKAMENIE 34 (122)
T ss_dssp SCSSCSTHHHHHHCCSSSCCHHHHHHTTCS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 787999999977758899999999999999
No 444
>2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11 c.37.1.20
Probab=36.51 E-value=16 Score=14.27 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHCCCCHH------HHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 449989999999998799978------9999949998899999999999
Q gi|254780693|r 172 RNLTERETSCLQLAGDGYTSE------EIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 172 ~~LT~RE~evL~l~a~G~t~~------eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
..+++++.+||..+|.+.+.. +++...+++..+|..++.++.+
T Consensus 286 ~~~~~~~~~iL~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~ 334 (357)
T 2fna_A 286 EIARKRYLNIMRTLSKCGKWSDVKRALELEEGIEISDSEIYNYLTQLTK 334 (357)
T ss_dssp GGGHHHHHHHHHHHTTCBCHHHHHHHHHHHHCSCCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 3188999999999866798323989999974279999999999999997
No 445
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus}
Probab=36.21 E-value=16 Score=14.24 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=27.5
Q ss_pred HHHHHH--HHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 999999--9998799978999994999889999999999980799
Q gi|254780693|r 177 RETSCL--QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 (235)
Q Consensus 177 RE~evL--~l~a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg~~ 219 (235)
=|++++ .|-..|..-.+.|..||||..|....++ |+|..
T Consensus 19 ~E~~~I~~aL~~~~gn~s~aA~~Lgi~r~tL~~klk----k~gI~ 59 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEIGIDLSNLYRKIK----SLNIR 59 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHTCCHHHHHHHHH----HTTCC
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHH----HHCCC
T ss_conf 999999999999199899999998979999999999----92899
No 446
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens}
Probab=36.17 E-value=16 Score=14.23 Aligned_cols=45 Identities=22% Similarity=0.288 Sum_probs=33.4
Q ss_pred CCCC-HHHHHHHHHHH-CCC-CHHHHHHHHCCCHHH-HHHHHHHHHHHC
Q ss_conf 4499-89999999998-799-978999994999889-999999999980
Q gi|254780693|r 172 RNLT-ERETSCLQLAG-DGY-TSEEIAEKLGLSVHT-VNAYLGSATVKL 216 (235)
Q Consensus 172 ~~LT-~RE~evL~l~a-~G~-t~~eIA~~L~iS~~T-V~~hl~~i~~KL 216 (235)
+.++ .+|..|+..+- .|. +.=-||..+|++... |+.++-.+.++=
T Consensus 5 pq~~~~~kekI~~fL~~~gps~AL~IAKnlGl~takdVN~~Ly~lekqh 53 (72)
T 3eyi_A 5 PQFSQQREEDIYRFLKDNGPQRALVIAQALGMRTAKDVNRDLYRMKSRH 53 (72)
T ss_dssp CCCSSHHHHHHHHHHHHHCSEEHHHHHHHTTCCSGGGTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCC
T ss_conf 7778988999999999669825889998858231777659999999832
No 447
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=35.65 E-value=14 Score=14.66 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=10.4
Q ss_pred CHHHHHHHHCCCHHHHHH
Q ss_conf 978999994999889999
Q gi|254780693|r 190 TSEEIAEKLGLSVHTVNA 207 (235)
Q Consensus 190 t~~eIA~~L~iS~~TV~~ 207 (235)
|-.++|..++||..||+.
T Consensus 37 ser~La~~~~vSr~tvr~ 54 (102)
T 1v4r_A 37 SVADIRAQFGVAAKTVSR 54 (102)
T ss_dssp CHHHHHHHSSSCTTHHHH
T ss_pred CHHHHHHHHCCCHHHHHH
T ss_conf 799999997987799999
No 448
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=34.65 E-value=17 Score=14.07 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=0.0
Q ss_pred HCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 87999789999949998899999
Q gi|254780693|r 186 GDGYTSEEIAEKLGLSVHTVNAY 208 (235)
Q Consensus 186 a~G~t~~eIA~~L~iS~~TV~~h 208 (235)
..|+|-+|+|..+|||..|+...
T Consensus 22 ~~gls~~~lA~~~gvs~~~ls~i 44 (192)
T 1y9q_A 22 SRGLSLDATAQLTGVSKAMLGQI 44 (192)
T ss_dssp HTTCCHHHHHHHHSSCHHHHHHH
T ss_pred HCCCCHHHHHHHHCCCHHHHHHH
T ss_conf 81999999999989399999999
No 449
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=34.44 E-value=17 Score=14.05 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=0.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9789999949998899999999999
Q gi|254780693|r 190 TSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 190 t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
|..++|..+|||..||+.-++....
T Consensus 33 se~eLa~~~gVSr~tVReAl~~L~~ 57 (239)
T 1hw1_A 33 AERELSELIGVTRTTLREVLQRLAR 57 (239)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 5999999989299999999999998
No 450
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=34.42 E-value=17 Score=14.04 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCC----CCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 8999999999879----9978999994999889999999999
Q gi|254780693|r 176 ERETSCLQLAGDG----YTSEEIAEKLGLSVHTVNAYLGSAT 213 (235)
Q Consensus 176 ~RE~evL~l~a~G----~t~~eIA~~L~iS~~TV~~hl~~i~ 213 (235)
|+=.+++.++-+- .|.+++|..+++|+++...+.+...
T Consensus 7 p~l~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~ 48 (113)
T 3oio_A 7 PKLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQYL 48 (113)
T ss_dssp HHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 999999999997558999999999998919999999998607
No 451
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=34.20 E-value=17 Score=14.02 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 7999789999949998899999999999
Q gi|254780693|r 187 DGYTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 187 ~G~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
++-|.-+|+..|+|..+-|+..+-+++.
T Consensus 28 ~~iTAi~Is~kL~i~K~~INrQLYkL~~ 55 (75)
T 1sfu_A 28 DYTTAISLSNRLKINKKKINQQLYKLQK 55 (75)
T ss_dssp CEECHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 4221999998863008788899999986
No 452
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=33.76 E-value=17 Score=13.97 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=0.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 97899999499988999999999998
Q gi|254780693|r 190 TSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 190 t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
|-.+.|..++||..||+.-++.+-..
T Consensus 36 se~~La~~~~VSr~TVR~Al~~L~~e 61 (243)
T 2wv0_A 36 SEREYAEQFGISRMTVRQALSNLVNE 61 (243)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 79999999796999999999999977
No 453
>1i3j_A I-TEVI, intron-associated endonuclease 1; protein-DNA complex, extended structure, Zn-finger, minor groove helix, helix-turn-helix; 2.20A {Enterobacteria phage T4} SCOP: d.285.1.1 PDB: 1t2t_A
Probab=33.41 E-value=18 Score=13.93 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=0.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 9789999949998899999999
Q gi|254780693|r 190 TSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 190 t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
|..|.|+.|+|+..||...+++
T Consensus 85 S~~EAAr~Lgis~~TI~~RiKs 106 (116)
T 1i3j_A 85 CAADAARHFKISSGLVTYRVKS 106 (116)
T ss_dssp SHHHHHHHHTCCHHHHHHHHHC
T ss_pred CHHHHHHHHCCCHHHHHHHHHC
T ss_conf 8999999968983778998708
No 454
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=33.12 E-value=13 Score=14.80 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHCCCC
Q ss_conf 99789999999976999
Q gi|254780693|r 218 AVNRIQAIAKAIRFGYI 234 (235)
Q Consensus 218 ~~nR~qava~A~~~Gli 234 (235)
|.+|-.+|++|++.|||
T Consensus 34 VasRKA~VV~aV~~GLi 50 (95)
T 2jrt_A 34 VASRKAAVVKAVIHGLI 50 (95)
T ss_dssp CHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHCCC
T ss_conf 35667899999971777
No 455
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=32.76 E-value=18 Score=13.86 Aligned_cols=36 Identities=28% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 899999999987999789999949998899999999
Q gi|254780693|r 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 176 ~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
+|+.=--.+-..|..-.+.|..||||.+|.+.-+++
T Consensus 52 Er~lI~~aL~~~~Gn~~~AA~~LGI~R~TL~~Klk~ 87 (91)
T 1ntc_A 52 ERTLLTTALRHTQGHKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999996895999999979899999999998
No 456
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, helix-turn-helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae TIGR4}
Probab=32.73 E-value=7.5 Score=16.54 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 7999789999949998899999999
Q gi|254780693|r 187 DGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 187 ~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
.|+|-.+.|..+|||+.|+..+-+.
T Consensus 13 ~glsq~eLA~~~Gis~~~is~~E~G 37 (158)
T 2p5t_A 13 HDLTQLEFARIVGISRNSLSRYENG 37 (158)
T ss_dssp -------------------------
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHCC
T ss_conf 4999999999989599999999879
No 457
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=30.72 E-value=19 Score=13.63 Aligned_cols=41 Identities=20% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHC--------CCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99899999999987--------999789999949998899999999999
Q gi|254780693|r 174 LTERETSCLQLAGD--------GYTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 174 LT~RE~evL~l~a~--------G~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
|+++|+.|+..+.. ..+..+||..+|+|+..|..-+..+.+
T Consensus 26 l~~~e~~Ia~~iI~~LD~~GyL~~~~eeia~~l~~~~~~ve~vL~~lQ~ 74 (76)
T 2k9l_A 26 LEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVRQKVLR 74 (76)
T ss_dssp CCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 9999999999999735978881889999999979099999999999860
No 458
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structure funded by NIH; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=30.44 E-value=19 Score=13.60 Aligned_cols=45 Identities=9% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHH-CCCCHHHHHHHHC--CCHHHHHHHHHHHHHHCCCCCH
Q ss_conf 9999999998-7999789999949--9988999999999998079978
Q gi|254780693|r 177 RETSCLQLAG-DGYTSEEIAEKLG--LSVHTVNAYLGSATVKLDAVNR 221 (235)
Q Consensus 177 RE~evL~l~a-~G~t~~eIA~~L~--iS~~TV~~hl~~i~~KLg~~nR 221 (235)
+..|.+-.++ ++.+.++|+..++ +++..|+..+..+.+++...++
T Consensus 10 ~~IEAlLFas~~pls~~~la~~~~~~~~~~~i~~~l~~L~~~y~~~~~ 57 (162)
T 1t6s_A 10 RSLEALIFSSEEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGR 57 (162)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999976389889999999866589999999999999999871798
No 459
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=28.92 E-value=21 Score=13.42 Aligned_cols=43 Identities=30% Similarity=0.320 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHCCC--------------CHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 9989999999998799--------------978999994999889999999999980
Q gi|254780693|r 174 LTERETSCLQLAGDGY--------------TSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 174 LT~RE~evL~l~a~G~--------------t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
||..|..++.++..-. +..+.+...|++.+++...++++..+|
T Consensus 19 Lt~~E~rll~~~is~i~~~~~~~~~~~~~i~~~e~~~~~~~~~~~~y~~lk~a~~~L 75 (132)
T 1hkq_A 19 LTLNEKRLVLCAASLIDSRKPLPKDGYLTIRADTFAEVFGIDVKHAYAALDDAATKL 75 (132)
T ss_dssp SCHHHHHHHHHHHHTCCTTSCCCGGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 998999999999998455799988967999999999997899117999999999998
No 460
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=28.42 E-value=21 Score=13.36 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHH----CC-CCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 99999998----79-99789999949998899999999999
Q gi|254780693|r 179 TSCLQLAG----DG-YTSEEIAEKLGLSVHTVNAYLGSATV 214 (235)
Q Consensus 179 ~evL~l~a----~G-~t~~eIA~~L~iS~~TV~~hl~~i~~ 214 (235)
..+|..+| .+ .|.++||..++||+..++.-++...+
T Consensus 30 lr~L~~LA~~~~~~~vs~~eIAe~~~ip~~~L~kIl~~L~k 70 (159)
T 3lwf_A 30 LTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRN 70 (159)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHC
T ss_conf 99999998088998195999998789099999999999832
No 461
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=27.35 E-value=22 Score=13.24 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=0.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9978999994999889999999999
Q gi|254780693|r 189 YTSEEIAEKLGLSVHTVNAYLGSAT 213 (235)
Q Consensus 189 ~t~~eIA~~L~iS~~TV~~hl~~i~ 213 (235)
.|-.++|..+|+|+.+.....++.+
T Consensus 94 ~sl~~la~~~g~S~~~l~R~Fk~~~ 118 (133)
T 1u8b_A 94 VTLEALADQVAMSPFHLHRLFKATT 118 (133)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHT
T ss_pred CCHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9999994261989999999999998
No 462
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.09A {Listeria innocua}
Probab=27.22 E-value=22 Score=13.22 Aligned_cols=36 Identities=8% Similarity=-0.032 Sum_probs=0.0
Q ss_pred HHHHHHHCCC--------CHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 9999998799--------97899999499988999999999998
Q gi|254780693|r 180 SCLQLAGDGY--------TSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 180 evL~l~a~G~--------t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
++...|..|. |-.|+|..++||..||+.-+.....+
T Consensus 17 ~i~~~I~~G~~~~G~~LPsE~eLa~~~~VSr~TvR~Al~~L~~e 60 (236)
T 3edp_A 17 KIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEE 60 (236)
T ss_dssp HHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999981999991999279999999795999999999999972
No 463
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=26.87 E-value=22 Score=13.18 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHC-----CCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 9899999999987-----99978999994999889999999999
Q gi|254780693|r 175 TERETSCLQLAGD-----GYTSEEIAEKLGLSVHTVNAYLGSAT 213 (235)
Q Consensus 175 T~RE~evL~l~a~-----G~t~~eIA~~L~iS~~TV~~hl~~i~ 213 (235)
|.....|..++-+ ..+-+++|..+++|+++.....+...
T Consensus 1 S~~~e~i~~~I~~~~~~~~l~l~~lA~~~~~s~~~l~r~fk~~~ 44 (103)
T 3lsg_A 1 SNAKELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKNF 44 (103)
T ss_dssp CHHHHHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 97999999999976679998999999998929999999999988
No 464
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix- turn-helix, UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=26.87 E-value=22 Score=13.18 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=0.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 97899999499988999999999998
Q gi|254780693|r 190 TSEEIAEKLGLSVHTVNAYLGSATVK 215 (235)
Q Consensus 190 t~~eIA~~L~iS~~TV~~hl~~i~~K 215 (235)
|-.|+|..++||..||+.-+......
T Consensus 38 sE~eLa~~~~VSR~TVR~Al~~L~~e 63 (248)
T 3f8m_A 38 AEREIAEQFEVARETVRQALRELLID 63 (248)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 79999999797999999999999977
No 465
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=26.21 E-value=23 Score=13.10 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 899999999987999789999949998899999999
Q gi|254780693|r 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 176 ~RE~evL~l~a~G~t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
+|+.=.-.+-..|..-.+.|..||||.+|.+.-++.
T Consensus 59 E~~~I~~aL~~~~gn~~~aA~~LGisR~tL~~klk~ 94 (98)
T 1eto_A 59 EQPLLDMVMQYTLGNQTRAALMMGINRGTLRKKLKK 94 (98)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999991998899999979899999999998
No 466
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=25.88 E-value=23 Score=13.06 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=0.0
Q ss_pred CCHHHHHHHHCCCHHH-HHHHHHHHHHHC
Q ss_conf 9978999994999889-999999999980
Q gi|254780693|r 189 YTSEEIAEKLGLSVHT-VNAYLGSATVKL 216 (235)
Q Consensus 189 ~t~~eIA~~L~iS~~T-V~~hl~~i~~KL 216 (235)
+|-.|--.+|||++.+ -..-|+.+|+||
T Consensus 11 Mt~~eA~~iLgl~~~a~t~~~Ik~ayr~l 39 (71)
T 2guz_A 11 MNSKEALQILNLTENTLTKKKLKEVHRKI 39 (71)
T ss_dssp CCHHHHHHHTTCCTTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 69999999829999978999999999999
No 467
>2hq2_A Putative heme/hemoglobin transport protein; heme oxygenase, structural repeat, structural genomics; HET: HEM; 1.45A {Escherichia coli O157} SCOP: e.62.1.1 PDB: 1u9t_A
Probab=24.77 E-value=24 Score=12.92 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHC--CCCHHHHHHHHCCCH
Q ss_conf 99999987--999789999949998
Q gi|254780693|r 180 SCLQLAGD--GYTSEEIAEKLGLSV 202 (235)
Q Consensus 180 evL~l~a~--G~t~~eIA~~L~iS~ 202 (235)
+.+.+.++ ++..++||..|||||
T Consensus 18 r~~~l~~~~P~~r~rd~A~~LgvSE 42 (354)
T 2hq2_A 18 RWLELKEQNPGKYARDIAGLMNIRE 42 (354)
T ss_dssp HHHHHHHHSTTCCHHHHHHHTTSCH
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCH
T ss_conf 9999998787988999998829989
No 468
>1mgt_A MGMT, protein (O6-methylguanine-DNA methyltransferase); DNA repair protein, suicidal enzyme, hyperthermostability; 1.80A {Thermococcus kodakarensis KOD1} SCOP: a.4.2.1 c.55.7.1
Probab=24.69 E-value=24 Score=12.91 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHC----CC--CHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 744499899999999987----99--9789999949998899999999
Q gi|254780693|r 170 AARNLTERETSCLQLAGD----GY--TSEEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 170 ~~~~LT~RE~evL~l~a~----G~--t~~eIA~~L~iS~~TV~~hl~~ 211 (235)
....+|+-+..|.+.+.. |+ |..+||..+|-+.|.|-..+.+
T Consensus 85 ~~~g~t~Fq~~V~~~l~~~IP~G~v~TYg~iA~~~g~~~RaVG~a~~~ 132 (174)
T 1mgt_A 85 SFEGVTPFEKKVYEWLTKNVKRGSVITYGDLAKALNTSPRAVGGAMKR 132 (174)
T ss_dssp CCTTCCHHHHHHHHHHHHHSCTTCCEEHHHHHHHTTSCHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEECHHHHHHHCCCCCHHHHHHHHH
T ss_conf 767999899999999996689973576999998829870899999840
No 469
>2wvf_A Hpnikr, putative nickel-responsive regulator; transcription factor, transcription regulation, RHH, DNA-binding, transcription, metal-binding; 1.60A {Helicobacter pylori} PDB: 2wvc_A 2ca9_A 2cad_A* 2caj_A 2wvd_A 2wve_A* 2wvb_A
Probab=24.09 E-value=25 Score=12.83 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 9999998079978999999997
Q gi|254780693|r 209 LGSATVKLDAVNRIQAIAKAIR 230 (235)
Q Consensus 209 l~~i~~KLg~~nR~qava~A~~ 230 (235)
+.++.++.|-.||.+||.-|++
T Consensus 25 lD~~i~~~Gy~nRSeaIRdair 46 (148)
T 2wvf_A 25 LDNRIIKNGYSSRSELVRDMIR 46 (148)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
T ss_conf 9999998099868899999999
No 470
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=22.37 E-value=27 Score=12.60 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999998799978999994
Q gi|254780693|r 179 TSCLQLAGDGYTSEEIAEKL 198 (235)
Q Consensus 179 ~evL~l~a~G~t~~eIA~~L 198 (235)
.+|-..+.+|+|++||=..|
T Consensus 50 ~~I~~~i~~G~sd~eI~~~l 69 (84)
T 2hl7_A 50 KQIYGQLQQGKSDGEIVDYM 69 (84)
T ss_dssp HHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999699999999999
No 471
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=22.13 E-value=27 Score=12.57 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHCCC--CHHHHHHHHCCCH-HHHHHHHHHHHHH
Q ss_conf 989999999998799--9789999949998-8999999999998
Q gi|254780693|r 175 TERETSCLQLAGDGY--TSEEIAEKLGLSV-HTVNAYLGSATVK 215 (235)
Q Consensus 175 T~RE~evL~l~a~G~--t~~eIA~~L~iS~-~TV~~hl~~i~~K 215 (235)
+..|..|+..+-... +.-.||..||++. +-||.++-++.++
T Consensus 10 ~~~~ekI~~~L~~~~~stAl~iAk~LGl~kakeVN~~LY~L~k~ 53 (79)
T 1xmk_A 10 AEIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQ 53 (79)
T ss_dssp HHHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 78999999999966995399999992997267774999999976
No 472
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens}
Probab=22.10 E-value=27 Score=12.57 Aligned_cols=149 Identities=7% Similarity=-0.072 Sum_probs=0.0
Q ss_pred HHHCCHHHHHHHH-HHHHHHHCCCCEEEEEECCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCE
Q ss_conf 8622599999999-999998583785899841777873102504422787789996248744412087999996179983
Q gi|254780693|r 9 KKSSSLQELSPRL-HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPI 87 (235)
Q Consensus 9 ~~~~sl~dl~~~l-~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dp~~~~~~~~~~p~ 87 (235)
..+.+++++...+ ..+.+.++++...++..+.................... .........+++..+......|+
T Consensus 12 ~~~~~l~~il~~i~~~l~~~~~~d~~~i~l~d~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 86 (169)
T 3oov_A 12 QKSIDVDEVLRLCAEGLHDVLGYERVNILMADTARTSLSFVAAVGTADFNPA-----GVVLPLDQRGGVITKCFTDRQVY 86 (169)
T ss_dssp HHCCCHHHHHHHHHHHHHHTTCCSEEEEEEECTTSSEEEEEEEESCSSCCCT-----TCEEESSGGGHHHHHHHHHTCCE
T ss_pred HHCCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEEEEECCCCCCCC-----CCCCCCCCCCCHHHHHHHCCCEE
T ss_conf 8629999999999999999969978999999678773677885157643234-----53214787767899999719729
Q ss_pred EECCHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEC--CCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 731013314667213678996542585535899721688752345410--5887899899999999999999999851
Q gi|254780693|r 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIEAHGACYQVITDFLEL 163 (235)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (235)
............... .........+....+++|+..+....|.+.+. ........+++..+..++..+.....+.
T Consensus 87 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~l~~Pl~~~~~~~G~l~~~~~~~~~~~s~~e~~~l~~la~~~a~ai~~~ 163 (169)
T 3oov_A 87 MIDDVSAYPTDFRLQ-SPYDAIRALRSKSFVICPIVVKGEAIGVFAVDNRSSRRSLNDTDVDTIKLFADQASSAIVRI 163 (169)
T ss_dssp EESCGGGSCGGGSCC-TTGGGCGGGCCSSEEEEEEEETTEEEEEEEEECTTSSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCC-CHHHHHHCCCCEEEEEEEEEECCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 994133464211442-02778742285089997775258618999999679999959999999999999999999999
No 473
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulator, transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=21.69 E-value=28 Score=12.51 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHCCC-HHHHHHHHHHHHHH
Q ss_conf 99978999994999-88999999999998
Q gi|254780693|r 188 GYTSEEIAEKLGLS-VHTVNAYLGSATVK 215 (235)
Q Consensus 188 G~t~~eIA~~L~iS-~~TV~~hl~~i~~K 215 (235)
..|..+||..+|+| +.||..-++.+.++
T Consensus 169 ~~t~~~lA~~lg~s~r~~vsR~L~~L~~~ 197 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQE 197 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 76799999996898188999999999988
No 474
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein structure initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=21.26 E-value=16 Score=14.15 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHCCCHHHHHHHHHHHHHHC
Q ss_conf 994999889999999999980
Q gi|254780693|r 196 EKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 196 ~~L~iS~~TV~~hl~~i~~KL 216 (235)
.+||||+..=..=++++|+||
T Consensus 32 ~iLGV~~~AS~~EIKkAYRkL 52 (329)
T 3lz8_A 32 AILGVQPTDDLKTIKTAYRRL 52 (329)
T ss_dssp ---------------------
T ss_pred HHHCCCCCCCHHHHHHHHHHH
T ss_conf 980999997999999999999
No 475
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, metal transport, zinc, iron, repressor, cytoplasm, DNA-binding; 2.60A {Vibrio cholerae}
Probab=21.15 E-value=28 Score=12.43 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHH--HCC--CCHHHHHHHH-----CCCHHHHHHHHHHHHHHCCC
Q ss_conf 4998999999999--879--9978999994-----99988999999999998079
Q gi|254780693|r 173 NLTERETSCLQLA--GDG--YTSEEIAEKL-----GLSVHTVNAYLGSATVKLDA 218 (235)
Q Consensus 173 ~LT~RE~evL~l~--a~G--~t~~eIA~~L-----~iS~~TV~~hl~~i~~KLg~ 218 (235)
++|+.-..||.++ .++ .|..||-..| .||..||..-+. .+.+.|.
T Consensus 14 r~T~qR~~Il~~l~~~~~~h~sa~el~~~l~~~~~~i~~aTVYR~L~-~l~~~gi 67 (150)
T 2w57_A 14 KVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLN-QFDDAGI 67 (150)
T ss_dssp CCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHH-HHHHTTS
T ss_pred CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH-HHHHHHE
T ss_conf 98999999999998389999999999999986188867799999999-9987546
No 476
>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*
Probab=20.83 E-value=29 Score=12.39 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=0.0
Q ss_pred HHHHHHHHCCC---CHHHHHHHHCCCHHHHHHHHH
Q ss_conf 99999998799---978999994999889999999
Q gi|254780693|r 179 TSCLQLAGDGY---TSEEIAEKLGLSVHTVNAYLG 210 (235)
Q Consensus 179 ~evL~l~a~G~---t~~eIA~~L~iS~~TV~~hl~ 210 (235)
+-.-++..+|. |++++|..+|+++.+|+.-+.
T Consensus 20 r~L~~l~~~g~~~iSS~~La~~~gi~~~qVRKDls 54 (212)
T 3keo_A 20 RIFKRFNTDGIEKASSKQIADALGIDSATVRRDFS 54 (212)
T ss_dssp HHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCCCEEECHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999988698689799999996989999998998
No 477
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=20.81 E-value=29 Score=12.38 Aligned_cols=42 Identities=19% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHCCCCH-HHHHHHH-----CCCHHHHHHHHHHHHHH
Q ss_conf 998999999999879997-8999994-----99988999999999998
Q gi|254780693|r 174 LTERETSCLQLAGDGYTS-EEIAEKL-----GLSVHTVNAYLGSATVK 215 (235)
Q Consensus 174 LT~RE~evL~l~a~G~t~-~eIA~~L-----~iS~~TV~~hl~~i~~K 215 (235)
+++.+.++|..++.|.+. .+|+..+ ++++.++..++....++
T Consensus 280 l~~~~~~il~~ia~~~~~~~~i~~~~~~~~~~~~~~~~~~~L~~L~~~ 327 (350)
T 2qen_A 280 RSPRYVDILRAIALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKM 327 (350)
T ss_dssp HCHHHHHHHHHHHTTCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 899999999999768997789999998512799999999999999978
No 478
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant protein; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=20.65 E-value=29 Score=12.36 Aligned_cols=38 Identities=26% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHC--C-CCHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 9999999987--9-9978999994999889999999999980
Q gi|254780693|r 178 ETSCLQLAGD--G-YTSEEIAEKLGLSVHTVNAYLGSATVKL 216 (235)
Q Consensus 178 E~evL~l~a~--G-~t~~eIA~~L~iS~~TV~~hl~~i~~KL 216 (235)
|..+...+++ | +|..|||..+++.+..... +.++++-|
T Consensus 32 eL~lfd~L~~~g~p~t~~eLA~~~g~~~~~~~~-L~r~Lr~L 72 (358)
T 1zg3_A 32 ELGIADAIHNHGKPMTLSELASSLKLHPSKVNI-LHRFLRLL 72 (358)
T ss_dssp HHTHHHHHHHHTSCEEHHHHHHHTTCCTTTHHH-HHHHHHHH
T ss_pred HCCCHHHHHHCCCCCCHHHHHHHHCCCHHHHHH-HHHHHHHH
T ss_conf 878178886569997999999883959257789-99999999
No 479
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=20.64 E-value=29 Score=12.36 Aligned_cols=20 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHCCCHHHHHHHHHH
Q ss_conf 89999949998899999999
Q gi|254780693|r 192 EEIAEKLGLSVHTVNAYLGS 211 (235)
Q Consensus 192 ~eIA~~L~iS~~TV~~hl~~ 211 (235)
+|+...+|+|..|+...++.
T Consensus 14 keV~~~~glsrstiy~~i~~ 33 (66)
T 1z4h_A 14 KFIMADTGFGKTFIYDRIKS 33 (66)
T ss_dssp HHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHC
T ss_conf 99999989799999999987
Done!