BLAST/PSIBLAST alignment of GI: 254780693 and GI: 116250469 at iteration 1
>gi|116250469|ref|YP_766307.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 248
>gi|115255117|emb|CAK06191.1| regulator of flagellar and motility genes, also regulates rem [Rhizobium leguminosarum bv. viciae 3841] Length = 248
 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 108/232 (46%), Positives = 153/232 (65%), Gaps = 3/232 (1%)

Query: 5   TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
           T+   + SS  +L PRL  +Q   +A+ FA++ ++ +   P +Q+L+CEL N+   +   
Sbjct: 17  TVRVNRISSRSDLFPRLIAMQKLAEAQGFAIFRVSGS-GLPAKQRLVCELENWGSSNAGF 75

Query: 65  PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPV 122
                + YGD  L H +  LLP+ W    +      +       RL+ G+LPF+G+AFPV
Sbjct: 76  GKAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFSPFMTRLQDGILPFSGLAFPV 135

Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
           RLG   NG+++FT + +  +++ I+E HG C  ++ D L L ++R++AA  L+ERE +CL
Sbjct: 136 RLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACL 195

Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
           QLAGDG  SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI
Sbjct: 196 QLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247