BLAST/PSIBLAST alignment of GI: 254780693 and GI: 116250469 at iteration 1
>gi|116250469|ref|YP_766307.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 248
>gi|115255117|emb|CAK06191.1| regulator of flagellar and motility genes, also regulates rem [Rhizobium leguminosarum bv. viciae 3841] Length = 248
Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/232 (46%), Positives = 153/232 (65%), Gaps = 3/232 (1%)
Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64
T+ + SS +L PRL +Q +A+ FA++ ++ + P +Q+L+CEL N+ +
Sbjct: 17 TVRVNRISSRSDLFPRLIAMQKLAEAQGFAIFRVSGS-GLPAKQRLVCELENWGSSNAGF 75
Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPV 122
+ YGD L H + LLP+ W + + RL+ G+LPF+G+AFPV
Sbjct: 76 GKAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFSPFMTRLQDGILPFSGLAFPV 135
Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182
RLG NG+++FT + + +++ I+E HG C ++ D L L ++R++AA L+ERE +CL
Sbjct: 136 RLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACL 195
Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234
QLAGDG SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI
Sbjct: 196 QLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247