BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780693|ref|YP_003065106.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] (235 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780693|ref|YP_003065106.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040370|gb|ACT57166.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 235 Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust. Identities = 235/235 (100%), Positives = 235/235 (100%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD Sbjct: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF Sbjct: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS Sbjct: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC Sbjct: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 >gi|315121858|ref|YP_004062347.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495260|gb|ADR51859.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 235 Score = 413 bits (1062), Expect = e-114, Method: Compositional matrix adjust. Identities = 199/235 (84%), Positives = 217/235 (92%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 MSENTL KKS SL ELS +L +IQ RIKARNFALYTIN ALD PRRQQL+CEL+NYD + Sbjct: 1 MSENTLLEKKSFSLLELSSKLKIIQKRIKARNFALYTINCALDSPRRQQLVCELNNYDPE 60 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 SG+IPNILI+TYGD+FLFHFNSGLLPIIW ++QEET+IESSGQ +RL+ G+LPFAGIAF Sbjct: 61 SGEIPNILIKTYGDEFLFHFNSGLLPIIWNNMQEETIIESSGQFFIRLDKGILPFAGIAF 120 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 P+RLGFHKNGYV+FT+E LMLANEVIIEAHGACYQVI FL LFKKRSSAARNLTERETS Sbjct: 121 PLRLGFHKNGYVVFTAECLMLANEVIIEAHGACYQVIMGFLALFKKRSSAARNLTERETS 180 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 CLQLAGDGYTSEEIA+KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC Sbjct: 181 CLQLAGDGYTSEEIAKKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 >gi|222084852|ref|YP_002543381.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722300|gb|ACM25456.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 248 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 117/225 (52%), Positives = 157/225 (69%), Gaps = 3/225 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S +L P+L +Q I A+NFALY + S P +Q+L+CEL N+ + + +E Sbjct: 24 SGRSDLFPKLVSMQKLIDAQNFALYRL-SGSGLPSKQRLVCELENWGSANPVMNKAFVEA 82 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 YG+ + H LLP++W ++ E+ + RL+ LLPFAG+AFPVRLG N Sbjct: 83 YGEAMIEHIEKSLLPLMWNGRDSDSTAETPDFAAFTQRLKPHLLPFAGVAFPVRLGSVGN 142 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GYV+FT++F+ +A+++I+E HG Q++ + L L ++RS AA L+ERE +CLQLAGDG Sbjct: 143 GYVVFTAKFMDVASDMIVELHGRSCQIMMELLSLDERRSPAAEALSEREIACLQLAGDGR 202 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIRFGYI Sbjct: 203 ISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRFGYI 247 >gi|86356299|ref|YP_468191.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280401|gb|ABC89464.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 248 Score = 222 bits (565), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 112/225 (49%), Positives = 149/225 (66%), Gaps = 3/225 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 SS +L PRL +Q A+ FA+Y ++ + P +Q+L+CEL N+ L + + Sbjct: 24 SSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GMPAKQRLVCELENWGLSNVGFGKAFTDA 82 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 YGD L H LLP+ W + + RL+ G+LPF+G+AFPVRLG N Sbjct: 83 YGDILLDHIEKSLLPLSWAGAHDRAAPGPADFSPFMTRLKDGILPFSGLAFPVRLGAVGN 142 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G+++FT + + +++ I+E HG C V+ D L L ++RS+AA L+ERE +CLQLAGDG Sbjct: 143 GFILFTGDDIDPSSDTIVELHGRCCHVMMDLLSLDERRSAAAEALSEREIACLQLAGDGR 202 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 203 ISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|327193021|gb|EGE59933.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 306 Score = 219 bits (559), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 110/225 (48%), Positives = 147/225 (65%), Gaps = 3/225 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 SS +L PRL +Q A+ FA+Y + S P +Q+L+CEL N+ + + Sbjct: 82 SSRSDLFPRLIAMQKLADAQGFAIYRV-SGSGLPAKQRLVCELENWGPSNAGFGKAFTDA 140 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 YGD L H LLP+ W + + RL G+LPF+G+AFPVRLG N Sbjct: 141 YGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPFMTRLRDGILPFSGLAFPVRLGAVGN 200 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G+++FT + + ++++I+E HG C ++ D L L ++R++AA L+ERE +CLQLAGDG Sbjct: 201 GFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQLAGDGR 260 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 261 ISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 305 >gi|190890350|ref|YP_001976892.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695629|gb|ACE89714.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 248 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 109/225 (48%), Positives = 148/225 (65%), Gaps = 3/225 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 SS +L PRL +Q A+ FA+Y ++ + P +Q+L+CEL N+ + + Sbjct: 24 SSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GLPAKQRLVCELENWGSSNAGFGKAFTDA 82 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 YGD L H LLP+ W + + RL G+LPF+G+AFPVRLG N Sbjct: 83 YGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPFMTRLRDGILPFSGLAFPVRLGAVGN 142 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G+++FT + + ++++I+E HG C ++ D L L ++R++AA L+ERE +CLQLAGDG Sbjct: 143 GFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQLAGDGR 202 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 203 ISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|218514696|ref|ZP_03511536.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 240 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 109/225 (48%), Positives = 148/225 (65%), Gaps = 3/225 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 SS +L PRL +Q A+ FA+Y ++ + P +Q+L+CEL N+ + + Sbjct: 16 SSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GLPAKQRLVCELENWGSSNAGFGKAFTDA 74 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 YGD L H LLP+ W + + RL G+LPF+G+AFPVRLG N Sbjct: 75 YGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPFMTRLRDGILPFSGLAFPVRLGAVGN 134 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G+++FT + + ++++I+E HG C ++ D L L ++R++AA L+ERE +CLQLAGDG Sbjct: 135 GFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQLAGDGR 194 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 195 ISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 239 >gi|150395471|ref|YP_001325938.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150026986|gb|ABR59103.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 247 Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 110/227 (48%), Positives = 147/227 (64%), Gaps = 3/227 (1%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +++ L RL +Q +I ARNFA+ N P ++L C LHN+ +I LI Sbjct: 21 RAAQAAGLVTRLQAMQRQINARNFAVLRTN-GRGLPAARKLTCVLHNWGTSCEEIARDLI 79 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFH 127 + YG++ L H + LLP++W E E+S G + RL+ LP++GIA P+RLG Sbjct: 80 DHYGEELLQHLDHSLLPVLWDGKGEHQTAETSDFGPFTRRLKDRKLPYSGIALPIRLGAQ 139 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 NGYV+F ++ + E I+E HG Q++TD L +KR A L++RE SCLQ+AGD Sbjct: 140 GNGYVVFAGSYIDASGEQIVELHGRSAQIMTDLLTFDEKRPLKAEALSDREISCLQMAGD 199 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+ SEEIAEK+GLSVHTVNAYLG+AT KLD+VNRIQAIAKAIR GYI Sbjct: 200 GHISEEIAEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAIRLGYI 246 >gi|82940563|emb|CAJ44292.1| putative transcription regulator protein MotS, LuxR family [Rhizobium leguminosarum bv. viciae] Length = 248 Score = 218 bits (554), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 107/225 (47%), Positives = 150/225 (66%), Gaps = 3/225 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 SS +L PRL +Q + A+ FA++ ++ + P +Q+L+CEL N+ + + Sbjct: 24 SSRSDLFPRLIAMQKLVDAQGFAIFRVSGS-GLPAKQRLVCELENWGPSNAGFGKAFTDA 82 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 YGD L H + LLP+ W + + RL+ G+LPF+G+AFPVRLG N Sbjct: 83 YGDILLDHIDKSLLPLSWAGGYDRAAPGPADFAPFMTRLQDGILPFSGLAFPVRLGAVGN 142 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G+++FT + + +++ I+E HG C ++ D L L ++R++AA L+ERE +CLQLAGDG Sbjct: 143 GFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQLAGDGR 202 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 203 ISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|116250469|ref|YP_766307.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255117|emb|CAK06191.1| regulator of flagellar and motility genes, also regulates rem [Rhizobium leguminosarum bv. viciae 3841] Length = 248 Score = 216 bits (550), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 108/232 (46%), Positives = 153/232 (65%), Gaps = 3/232 (1%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 T+ + SS +L PRL +Q +A+ FA++ ++ + P +Q+L+CEL N+ + Sbjct: 17 TVRVNRISSRSDLFPRLIAMQKLAEAQGFAIFRVSGS-GLPAKQRLVCELENWGSSNAGF 75 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPV 122 + YGD L H + LLP+ W + + RL+ G+LPF+G+AFPV Sbjct: 76 GKAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFSPFMTRLQDGILPFSGLAFPV 135 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 RLG NG+++FT + + +++ I+E HG C ++ D L L ++R++AA L+ERE +CL Sbjct: 136 RLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACL 195 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QLAGDG SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 196 QLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|262283888|gb|ACY40752.1| VisR [Rhizobium leguminosarum bv. viciae] Length = 248 Score = 216 bits (549), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 108/232 (46%), Positives = 152/232 (65%), Gaps = 3/232 (1%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 T+ + SS +L PRL +Q A+ FA++ ++ + P +Q+L+CEL N+ + Sbjct: 17 TVRVNRISSRSDLFPRLIAMQKLADAQGFAIFRVSGS-GLPAKQRLVCELENWGSSNAGF 75 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPV 122 + YGD L H + LLP+ W + + RL+ G+LPF+G+AFPV Sbjct: 76 GKAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFSPFMTRLQDGILPFSGLAFPV 135 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 RLG NG+++FT + + +++ I+E HG C ++ D L L ++R++AA L+ERE +CL Sbjct: 136 RLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACL 195 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QLAGDG SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 196 QLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|241203093|ref|YP_002974189.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856983|gb|ACS54650.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 248 Score = 215 bits (548), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 107/225 (47%), Positives = 149/225 (66%), Gaps = 3/225 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 SS +L PRL +Q A+ FA++ ++ + P +Q+L+CEL N+ + + Sbjct: 24 SSRSDLFPRLIAMQKLADAQGFAIFRVSGS-GIPAKQRLVCELENWGSSNAGFGKAFTDA 82 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 YGD L H + LLP+ W + + RL+ G+LPF+G+AFPVRLG N Sbjct: 83 YGDILLDHIDKSLLPLSWAGGYDRAAPGPADFSPFMTRLQDGILPFSGLAFPVRLGAVGN 142 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G+++FT + + +++ I+E HG C ++ D L L ++R++AA L+ERE +CLQLAGDG Sbjct: 143 GFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQLAGDGR 202 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 203 ISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|209547915|ref|YP_002279832.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533671|gb|ACI53606.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 248 Score = 214 bits (546), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 107/225 (47%), Positives = 146/225 (64%), Gaps = 3/225 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 SS +L PRL +Q A FA++ + S P +Q+L+CEL N+ + + Sbjct: 24 SSRSDLFPRLIAMQKLADAHGFAIFRV-SGSGIPAKQRLVCELENWGSSNAGFGKAFTDA 82 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 YGD L H LLP+ W + + RL+ G++PF+G+AFPVRLG N Sbjct: 83 YGDALLEHIEKSLLPLSWAGGCDRAAPGPADFAPFMTRLQDGIVPFSGLAFPVRLGAVGN 142 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G+++FT + + +++ I+E HG C ++ D L L ++R++AA L+ERE +CLQLAGDG Sbjct: 143 GFIVFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQLAGDGR 202 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 203 ISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|325291914|ref|YP_004277778.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325059767|gb|ADY63458.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 248 Score = 212 bits (539), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 109/225 (48%), Positives = 148/225 (65%), Gaps = 3/225 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S +L P+L +Q + ARNF + T +A FP +++L CEL N+ +++ + I Sbjct: 24 TSRSDLFPKLVAMQKLVGARNFVV-TKAAASGFPNKKKLTCELENWGMNAAEQSAQFIRA 82 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV--IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 GD L H + LLP+IW++ + L R+E LP+AG+A PVRLG N Sbjct: 83 VGDILLDHIETSLLPVIWRNKNAGGFADLPDVPALMRRIENDTLPYAGLALPVRLGTIGN 142 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GY++F L+L NEV+IE H C +++ D L L +++ + + L+ERE +CLQLAGDG Sbjct: 143 GYIVFCGSNLVLDNEVVIEQHIKCCEIMVDMLALDERKVAPSEALSEREIACLQLAGDGR 202 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SEEIA KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 203 ISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|15887874|ref|NP_353555.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15155462|gb|AAK86340.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 251 Score = 210 bits (535), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 108/225 (48%), Positives = 148/225 (65%), Gaps = 3/225 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 +S +L P+L +Q + ARNF + T +A FP ++++ CEL N+ +++ + I Sbjct: 27 TSRSDLFPKLVAMQKLVGARNFVV-TKAAASGFPNKKKMTCELENWGMNAAEQSAQFIRA 85 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETV--IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 GD L H + LLP+IW++ + L R+E LP+AG+A PVRLG N Sbjct: 86 VGDILLDHIETSLLPVIWRNKNAGGFADLPDVPALLRRIENDTLPYAGLALPVRLGTIGN 145 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GY++F L+L NEV+IE H C +++ D L L +++ + + L+ERE +CLQLAGDG Sbjct: 146 GYIVFCGTNLILDNEVVIEQHIKCCEIMVDMLALDERKVAPSEALSEREIACLQLAGDGR 205 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SEEIA KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 206 ISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 250 >gi|227820844|ref|YP_002824814.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339843|gb|ACP24061.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 246 Score = 203 bits (516), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 101/220 (45%), Positives = 141/220 (64%), Gaps = 3/220 (1%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L RL +Q ++ A+NFA+ +N P ++L C LHN+ S + L++ YG++ Sbjct: 27 LVTRLQAMQRQVNAKNFAVLRVNGR-GMPATRKLTCVLHNWGAASETNAHELLKVYGEEL 85 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQ--LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L H + L ++W E ++ S RL+G L ++GIAFP+RLG NGYV+F Sbjct: 86 LQHLDRSPLAVLWDGQGEHQAADAPDMALFSNRLKGRKLSYSGIAFPIRLGAQGNGYVVF 145 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ E +++ HG C QV+ D L ++R +L++RE +CLQ+AGDGY SEEI Sbjct: 146 AGSYIDAPAEQVLDLHGRCAQVMADMLAADERRLFKGESLSDREIACLQMAGDGYISEEI 205 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AEK+GLSVHTVNAYLG+AT KLD+VNRIQAIAKAIR GYI Sbjct: 206 AEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAIRLGYI 245 >gi|15964401|ref|NP_384754.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307311543|ref|ZP_07591184.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318898|ref|ZP_07598329.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|3894103|emb|CAA11949.1| unnamed protein product [Sinorhizobium meliloti] gi|15073578|emb|CAC45220.1| Regulator of flagellar operons, LuxR family, probable forming a heterodimer with VisN [Sinorhizobium meliloti 1021] gi|306895312|gb|EFN26067.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306899560|gb|EFN30189.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 246 Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 108/220 (49%), Positives = 140/220 (63%), Gaps = 3/220 (1%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L RL +Q +I A+NFA+ N P ++L C LHN+ + LI YGD+ Sbjct: 27 LVTRLQAMQRQINAKNFAVLRTN-GRGLPATRKLTCVLHNWGASCEENARDLIMLYGDEL 85 Query: 77 LFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L H + LLP++W E E S G + RL LP++GIAFP+RLG NGYV+F Sbjct: 86 LQHLDLSLLPVLWNGQGEHQTAEVSDFGPFTRRLRERKLPYSGIAFPIRLGAQGNGYVMF 145 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + E I+E HG Q++ D L +KR A L++RE +CLQ+AGDG+ SEEI Sbjct: 146 AGSYIDASGEQIVELHGRSAQIMADLLAADEKRLFKAEALSDREIACLQMAGDGHISEEI 205 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AEK+GLSVHTVNAYLG+AT KLD+VNRIQAIAKAIR GYI Sbjct: 206 AEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAIRLGYI 245 >gi|222149994|ref|YP_002550951.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736976|gb|ACM37939.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 251 Score = 198 bits (503), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 110/240 (45%), Positives = 151/240 (62%), Gaps = 10/240 (4%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 S L + +++ ++ PRL +Q I AR+FA++ + + PR++ L CE ++ Sbjct: 14 SAADLKARLAANRGDIFPRLIAMQKAINARSFAVFRVAGS-GLPRKRMLQCECESWAASG 72 Query: 62 --GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAG 117 G + + YGD L H + LLP++W + T SS G RL G LPF+G Sbjct: 73 MVGSYSDAFVSCYGDLLLSHIDDLLLPLMWNAKDNATFCISSEFGAFVSRLPAGNLPFSG 132 Query: 118 IAFPVRLGFHKNGYVIFT---SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 +AFPVRLG NGYVIF SE L ++V+I+ H +++ D L L +++ + + L Sbjct: 133 VAFPVRLGAVGNGYVIFALNGSEDL--DSDVMIDMHNRSCKLMMDILSLSERKVAPSEAL 190 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++RE +CLQLAGDG SEEIAE LGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 191 SDREIACLQLAGDGRISEEIAENLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 250 >gi|218509884|ref|ZP_03507762.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli Brasil 5] Length = 373 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 75/188 (39%), Positives = 110/188 (58%), Gaps = 3/188 (1%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 SS +L PRL +Q A+ FA+Y + S P +Q+L+CEL N+ + + Sbjct: 16 SSRSDLFPRLIAMQKLADAQGFAIYRV-SGSGLPAKQRLVCELENWGSSNAGFGKAFTDA 74 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 YGD L H LLP+ W + + RL G+LPF+G+AFPVRLG N Sbjct: 75 YGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPFMTRLRDGILPFSGLAFPVRLGAVGN 134 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G+++FT + + ++++I+E HG C ++ D L L ++R++AA L+ERE +CLQLAGDG Sbjct: 135 GFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQLAGDGR 194 Query: 190 TSEEIAEK 197 SEEIA K Sbjct: 195 ISEEIARK 202 >gi|218673112|ref|ZP_03522781.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 96 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 65/94 (69%), Positives = 79/94 (84%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L++++I+E HG C ++ D L L ++R+ AA L+ERE +CLQLAGDG SEEIAEKLGL Sbjct: 2 LSSDMIVELHGRCCHIMMDLLSLDERRTGAAEALSEREIACLQLAGDGRISEEIAEKLGL 61 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 62 SVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 95 >gi|163758001|ref|ZP_02165089.1| putative LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284290|gb|EDQ34573.1| putative LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 253 Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 116/230 (50%), Gaps = 16/230 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD-----IP 65 + S +L P+L +Q + A FA+ + R+Q + N D+ + Sbjct: 35 AGSTADLFPKLVAMQRQCAAAGFAVMSA--------REQTLLAAGNLDITMKSPGCDAMA 86 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 L+++ L H +S PI++ + + ++ E G + FPV LG Sbjct: 87 GPLLKSQMGFLLRHLDSSPRPILYAANSDAVPSPPPALPLMQTEEG---RTDLLFPVSLG 143 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 NGY+ F + +E++I+ H ++ + L L + A L ERE CLQL Sbjct: 144 AMGNGYIGFFGVDGAIDSELLIDLHRKSLAMMRETLRLAFGAAPVADKLNEREIECLQLV 203 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G+G SE I E+L LSVHTVNAYLGSAT KLDAVNRIQAIAK+IR G I Sbjct: 204 GNGMKSEAIGERLNLSVHTVNAYLGSATTKLDAVNRIQAIAKSIRLGIIA 253 >gi|13472562|ref|NP_104129.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14023308|dbj|BAB49915.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 256 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 77/226 (34%), Positives = 109/226 (48%), Gaps = 23/226 (10%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLI-CELHNYDLDSGDIPNILIETY------ 72 R I I A F LY ++ + P R +L+ C DS D P I + T Sbjct: 42 RCRWISVDINASAFGLYFVSPS---PERARLVPC------FDS-DYPGIAVATKFIAGAN 91 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA----GIAFPVRLGFHK 128 G++ + H ++ P W + E G L+ + L P A GIAFPV + Sbjct: 92 GEEIVRHTHNSTEPRWWTDDGLAAMAEMFGNLAWTAQ--LSPLAPGTSGIAFPVHADRGQ 149 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G V+F + L + + E H C+ + + + R +++RE CL+L +G Sbjct: 150 CGLVVFLGSKMALPQDALYEIHARCFSLFAAVARIRPSDAGRMRAISKRELECLKLTANG 209 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TSEEIA L LSVHT N YL +T KL+AVNR QA+AKA+R G I Sbjct: 210 NTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255 >gi|260466633|ref|ZP_05812821.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029639|gb|EEW30927.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 256 Score = 104 bits (260), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 108/226 (47%), Gaps = 23/226 (10%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLI-CELHNYDLDSGDIPNILIETY------ 72 R I I A F L+ ++ + P R +L+ C DS D P + + T Sbjct: 42 RCRWISVDINASAFGLFFVSPS---PERARLVPC------FDS-DYPGVAVATKFISAAN 91 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA----GIAFPVRLGFHK 128 G++ + H + P W + E G+L+ + + P A GIA PV + Sbjct: 92 GEEIVRHTRNSTEPRWWADDGVAAMAEMFGKLAWTEQ--MAPLAPGTSGIALPVHADRGQ 149 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G V+F + L + + E H C+ + + + R +++RE CL+L +G Sbjct: 150 CGLVVFLGSEIALPQDTLYEIHARCFSLFAAVARILPSDAGRTRAISKRELECLKLTANG 209 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TSEEIA L LSVHT N YL +T KL+AVNR QA+AKA+R G I Sbjct: 210 NTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255 >gi|319781695|ref|YP_004141171.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167583|gb|ADV11121.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 256 Score = 101 bits (252), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 105/224 (46%), Gaps = 19/224 (8%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLI-CELHNYDLDSGDIPNILIETY------ 72 R I + A F L+ ++ + P R +L+ C DS D P I + T Sbjct: 42 RCRWIAVDMNASAFGLFFVSPS---PERARLVPC------FDS-DYPGIAVATKFISGAN 91 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS-VRLEGGLLP-FAGIAFPVRLGFHKNG 130 G++ + H P W E G + L+P +GIAFPV + G Sbjct: 92 GEEIVRHTRISTEPRWWTDDGVPATAELFGDFAWTERMAALVPGTSGIAFPVHADRGQCG 151 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 V+F + L + + E H C+ + + + R +++RE CL+L +G T Sbjct: 152 LVVFLGSEMTLQQDALYEVHARCFSLFAAVARIRPGDAGRMRAISKRELECLKLTANGNT 211 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SEEIA L LSVHT N YL +T KL+AVNR QA+AKA+R G I Sbjct: 212 SEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255 >gi|218458076|ref|ZP_03498167.1| LuxR family transcriptional regulator [Rhizobium etli Kim 5] Length = 49 Score = 89.0 bits (219), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 43/49 (87%), Positives = 45/49 (91%) Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 DG SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 1 DGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYIS 49 >gi|222085036|ref|YP_002543565.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722484|gb|ACM25640.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 245 Score = 80.1 bits (196), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/153 (37%), Positives = 69/153 (45%), Gaps = 6/153 (3%) Query: 85 LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANE 144 LP ++ + +S QL L I P G VI + + E Sbjct: 95 LPFVYDTAANTNRDDSKIQLRASLFERFRMARSICLPTHDASGIRGAVILSGDREAFTAE 154 Query: 145 VIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLS 201 E CY I F L + R+ R LT+RE CL G TS EIAE L LS Sbjct: 155 ---ETKDLCYIAIHVFDRLAEIRNLDVRIVDTLTDRELDCLNWTAAGKTSAEIAEILTLS 211 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 212 EHTVNHYLNRATKKLDTVNRTQAVAKALRVGLI 244 >gi|227821019|ref|YP_002824989.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227340018|gb|ACP24236.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 257 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 89/205 (43%), Gaps = 24/205 (11%) Query: 50 LICELHNYDLDS-------GDIPNILIETYGDDFLFHFNSGLLPII------------WQ 90 LIC + D++ ++P L+ Y + F++G+ + W+ Sbjct: 56 LICSIPPIDMERLSAATVISNMPAELLNKYDSLSMLRFSTGVRRLRETTTPFQITLEDWE 115 Query: 91 SIQEETVIESSGQLSVRL-EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 S E +S+ V L E G+ F FPV G VI L +E Sbjct: 116 S--EGGTPDSAADYIVMLRENGI--FQANYFPVHDAEGGRGAVILMGPEADLPMTAAMEL 171 Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 V E+ S++ L+ERE CL G TS EIA LGLS HTVN YL Sbjct: 172 QMIAIHVYNRLAEIGSVWKSSSTTLSEREIQCLSWTAAGKTSAEIAGILGLSEHTVNHYL 231 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 T KLDAVNR QA+ KA++ GYI Sbjct: 232 NHVTKKLDAVNRTQAVVKAMKKGYI 256 >gi|86356503|ref|YP_468395.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280605|gb|ABC89668.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 248 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/90 (51%), Positives = 52/90 (57%), Gaps = 3/90 (3%) Query: 148 EAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 E CY I F L + R+ R +LT+RE CL G TS EIAE L LS HT Sbjct: 158 EMRELCYIAIHVFDRLAEIRNLDTRMTDSLTDREIDCLNWTAAGKTSAEIAEILALSEHT 217 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN YL AT KLD VNR QA+AKA+R G I Sbjct: 218 VNHYLNRATKKLDTVNRTQAVAKALRIGLI 247 >gi|218463393|ref|ZP_03503484.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli Kim 5] Length = 245 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/90 (52%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 148 EAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 E CY I F L + R+ R LTERE CL G TS EIAE L LS HT Sbjct: 155 EMRELCYIAIHVFDRLAEIRNLDTRVTDALTEREIDCLNWTAAGKTSAEIAEILSLSEHT 214 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN YL AT KLD VNR QA+AKA+R G I Sbjct: 215 VNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|46370360|gb|AAS89968.1| transcriptional regulator [Agrobacterium vitis] Length = 230 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 57/118 (48%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 G FPV G V E + ++ H V E+ + + LTE Sbjct: 112 GACFPVHDAHGNRGAVNICGEMPAFSFVDMVLLHYLAGHVFNRLAEIRELDARVTETLTE 171 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE CL G TS EIAE +GLS HT+N YL AT KLD VNR QA+AKA+R I Sbjct: 172 REIECLTWTAAGKTSVEIAEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSLI 229 >gi|116250693|ref|YP_766531.1| LuxR/GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255341|emb|CAK06416.1| putative LuxR/GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 245 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/90 (51%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 148 EAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 E CY I F L + R+ R LT+RE CL G TS EIAE L LS HT Sbjct: 155 EMRELCYIAIHVFDRLAEIRNLDTRMTDTLTDREIDCLNWTAAGKTSAEIAEILTLSEHT 214 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN YL AT KLD VNR QA+AKA+R G I Sbjct: 215 VNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|218673534|ref|ZP_03523203.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 245 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/90 (51%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 148 EAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 E CY I F L + R+ R LT+RE CL G TS EIAE L LS HT Sbjct: 155 EMRELCYIAIHVFDRLAEIRNLDTRITDALTDREIDCLNWTAAGKTSAEIAEILALSEHT 214 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN YL AT KLD VNR QA+AKA+R G I Sbjct: 215 VNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|218681045|ref|ZP_03528942.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 244 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/90 (50%), Positives = 52/90 (57%), Gaps = 3/90 (3%) Query: 148 EAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 E CY + + L + R+ AR LT+RE CL G TS EIAE L LS HT Sbjct: 154 EMRELCYIAVHVYDRLAEIRNLDARITDTLTDREIDCLNWTAAGKTSAEIAEILTLSEHT 213 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN YL AT KLD VNR QA+AKA+R G I Sbjct: 214 VNHYLNRATKKLDTVNRTQAVAKALRIGLI 243 >gi|218661906|ref|ZP_03517836.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli IE4771] Length = 245 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/90 (51%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 148 EAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 E CY I F L + R+ R LT+RE CL G TS EIAE L LS HT Sbjct: 155 EMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEIAEILSLSEHT 214 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN YL AT KLD VNR QA+AKA+R G I Sbjct: 215 VNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|241203295|ref|YP_002974391.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857185|gb|ACS54852.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 244 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 46/90 (51%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 148 EAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 E CY I F L + R+ R LT+RE CL G TS EIAE L LS HT Sbjct: 154 EMRELCYISIHIFDRLAEIRNLDTRMTDTLTDREIDCLNWTAAGKTSAEIAEILTLSEHT 213 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN YL AT KLD VNR QA+AKA+R G I Sbjct: 214 VNHYLNRATKKLDTVNRTQAVAKALRIGLI 243 >gi|190890568|ref|YP_001977110.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695847|gb|ACE89932.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 246 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/90 (51%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 148 EAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 E CY I F L + R+ R LT+RE CL G TS EIAE L LS HT Sbjct: 156 EMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEIAEILVLSEHT 215 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN YL AT KLD VNR QA+AKA+R G I Sbjct: 216 VNHYLNRATKKLDTVNRTQAVAKALRIGLI 245 >gi|327188113|gb|EGE55336.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 245 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/90 (51%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 148 EAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 E CY I F L + R+ R LT+RE CL G TS EIAE L LS HT Sbjct: 155 EMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEIAEILVLSEHT 214 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN YL AT KLD VNR QA+AKA+R G I Sbjct: 215 VNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|218508993|ref|ZP_03506871.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli Brasil 5] Length = 245 Score = 75.5 bits (184), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/90 (51%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 148 EAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 E CY I F L + R+ R LT+RE CL G TS EIAE L LS HT Sbjct: 155 EMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEIAEILVLSEHT 214 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN YL AT KLD VNR QA+AKA+R G I Sbjct: 215 VNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|159184428|ref|NP_353732.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139741|gb|AAK86517.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 201 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 58/118 (49%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 + FPV + G + F+ +L + E V E+ + L+E Sbjct: 83 SVWFPVHDVTMRRGAISFSGNKAVLPTTRLAELLYISCHVFARLSEIRRLDLRVPETLSE 142 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE CL G TS EIAE + LS HT+N YL AT KLD VNR QA+AKA+R G I Sbjct: 143 REIDCLNWTAAGKTSAEIAEIMMLSEHTINHYLNRATKKLDTVNRTQAVAKALRVGLI 200 >gi|209548111|ref|YP_002280028.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533867|gb|ACI53802.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 244 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 45/90 (50%), Positives = 51/90 (56%), Gaps = 3/90 (3%) Query: 148 EAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 E CY I + L + R+ R LT+RE CL G TS EIAE L LS HT Sbjct: 154 EMRELCYISIHVYDRLAEIRNLDTRITDTLTDREIDCLNWTAAGKTSAEIAEILTLSEHT 213 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN YL AT KLD VNR QA+AKA+R G I Sbjct: 214 VNHYLNRATKKLDTVNRTQAVAKALRIGLI 243 >gi|222147695|ref|YP_002548652.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221734683|gb|ACM35646.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 230 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/118 (38%), Positives = 56/118 (47%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 G FPV G V E + ++ V E+ + + LTE Sbjct: 112 GACFPVHDAHGNRGAVNICGEMPAFSFVDMVLLQYLAGHVFNRLAEIRELDARVTETLTE 171 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE CL G TS EIAE +GLS HT+N YL AT KLD VNR QA+AKA+R I Sbjct: 172 REIECLTWTAAGKTSVEIAEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSLI 229 >gi|150395666|ref|YP_001326133.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150027181|gb|ABR59298.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 286 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 54/115 (46%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 FPV G VI L +E V E+ + L+ERE Sbjct: 171 FPVHDAEGGRGAVILMGPEAGLPMTAAMELQMIAIHVYNRLAEIGSVWKNTNTVLSEREI 230 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL G TS EIA LGLS HTVN YL T KLDAVNR QA+ KA++ GYI Sbjct: 231 QCLNWTAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 285 >gi|15964582|ref|NP_384935.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309328|ref|ZP_07588991.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307320064|ref|ZP_07599485.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15073760|emb|CAC45401.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021] gi|306894279|gb|EFN25044.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306900197|gb|EFN30815.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 277 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 47/115 (40%), Positives = 54/115 (46%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 FPV G VI L +E V E+ + L+ERE Sbjct: 162 FPVHDAEGGRGAVILMGPEAELPMTAAMELQMIAIHVYNRLAEIGSVWKNTNTVLSEREI 221 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL G TS EIA LGLS HTVN YL T KLDAVNR QA+ KA++ GYI Sbjct: 222 QCLSWTAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYI 276 >gi|66277262|gb|AAY44562.1| LuxR-like protein [Aeromonas sp. SF6-7] Length = 260 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 86/186 (46%), Gaps = 18/186 (9%) Query: 65 PNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR---LEGGLLP 114 P+ ++ Y D+ + + + LPI W + E G + V E GL Sbjct: 60 PDSWVQAYTDNHMLACDPVIPLARKQTLPIYWNRLDERARFLPEGTMDVMGLAAEFGLR- 118 Query: 115 FAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + S Sbjct: 119 -NGISFPLHGATGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRMVRFSLMDS 177 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERET CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK Sbjct: 178 DPKDPLTERETECLFWASEGKTSSEIACILGITERTVNYHLNHVTRKTGSMNRYQAIAKG 237 Query: 229 IRFGYI 234 + G++ Sbjct: 238 VSTGHV 243 >gi|325292093|ref|YP_004277957.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325059946|gb|ADY63637.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 246 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 55/118 (46%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 + FPV G V F+ L + E + E+ + L E Sbjct: 128 SVWFPVHDITTMRGAVSFSGNKTTLPTSQLAELFYISSHIFARLSEIRRLDLRVPETLNE 187 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE CL G TS EIAE + LS HT+N YL AT KLD VNR QA+AKA+R G I Sbjct: 188 REIDCLNWTAAGKTSAEIAEIMMLSEHTINHYLNRATKKLDTVNRTQAVAKALRVGLI 245 >gi|163758447|ref|ZP_02165535.1| putative LuxR/GerE family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284736|gb|EDQ35019.1| putative LuxR/GerE family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 245 Score = 71.6 bits (174), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 40/67 (59%), Positives = 43/67 (64%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A LTERE CL G TS EIA L LS HTVN YL +A KLDAVNR QA+A Sbjct: 178 SKADSPLTERERECLVWTSSGKTSVEIARILSLSEHTVNHYLNNAARKLDAVNRTQAVAL 237 Query: 228 AIRFGYI 234 AIR G+I Sbjct: 238 AIRQGFI 244 >gi|150397799|ref|YP_001328266.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150029314|gb|ABR61431.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 247 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 48/71 (67%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F S A L+ RE CL+ A G +S+EIA LG+S +TV++Y SAT KLDAVNR+Q Sbjct: 177 FDAGSGAREKLSSREIECLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQ 236 Query: 224 AIAKAIRFGYI 234 AIA+A+R I Sbjct: 237 AIARAMRMKLI 247 >gi|330828294|ref|YP_004391246.1| LuxR-like protein [Aeromonas veronii B565] gi|328803430|gb|AEB48629.1| LuxR-like protein [Aeromonas veronii B565] Length = 268 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 11/159 (6%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G + V E GL GI+FP+ +NG + F + Sbjct: 95 LPIYWNRLDERASFLQEGTMDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITSERAS 152 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + S+ LTERET CL A +G TS EIA Sbjct: 153 SDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTERETECLFWASEGKTSSEIA 212 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 213 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSTGLL 251 >gi|15966467|ref|NP_386820.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15075738|emb|CAC47293.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021] Length = 247 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 48/71 (67%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F S A L+ RE CL+ A G +S+EIA LG+S +TV++Y SAT KLDAVNR+Q Sbjct: 177 FDAGSGAREKLSSREVECLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQ 236 Query: 224 AIAKAIRFGYI 234 AIA+A+R I Sbjct: 237 AIARAMRMKLI 247 >gi|59940143|gb|AAX12610.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] Length = 260 Score = 71.2 bits (173), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 11/159 (6%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G + V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERASFLQEGTMDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITSERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + S+ LTERET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTERETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSTGLL 243 >gi|59940069|gb|AAX12573.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 11/159 (6%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G + V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERASFLQEGTMDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITSERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + S+ LTERET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTERETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSTGLL 243 >gi|59940039|gb|AAX12558.1| LuxR-type transcriptional regulator [Aeromonas media] Length = 260 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E+ G + V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDEKARFLQEGSMDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITRERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + LTERET CL A DG TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRQSMREDDPQEALTERETECLFWASDGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKRVSSG 241 >gi|59940141|gb|AAX12609.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] Length = 260 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 11/159 (6%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G + V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERASFLQEGTMDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITSERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + S+ LTERET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRVVRFSMMDSAGKDPLTERETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKEVSTGLL 243 >gi|307300496|ref|ZP_07580276.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318361|ref|ZP_07597796.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306896043|gb|EFN26794.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306904662|gb|EFN35246.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 321 Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/71 (52%), Positives = 48/71 (67%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F S A L+ RE CL+ A G +S+EIA LG+S +TV++Y SAT KLDAVNR+Q Sbjct: 251 FDAGSGAREKLSSREVECLRWAAAGKSSDEIAIILGISAYTVSSYFKSATRKLDAVNRMQ 310 Query: 224 AIAKAIRFGYI 234 AIA+A+R I Sbjct: 311 AIARAMRMKLI 321 >gi|59940089|gb|AAX12583.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFEATIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940149|gb|AAX12613.1| LuxR-type transcriptional regulator [Aeromonas sp. 1m] Length = 260 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDEPQEALTDRETECLVWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|150395665|ref|YP_001326132.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150027180|gb|ABR59297.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 246 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 89/185 (48%), Gaps = 20/185 (10%) Query: 68 LIETYGDDFLFHFNSGLL----PIIWQSIQEETV-------------IESSGQLSV-RLE 109 L+ T+ DFL ++S L P+I Q ++ T+ ++ G+ ++ E Sbjct: 63 LMTTWPMDFLRRYDSARLIDGSPVI-QRLRRSTIPFTYDAHQLARGRVDGKGEAAICVFE 121 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 +P G+ PV V F + ++ + + E + + + E+ + Sbjct: 122 QANMP-RGVYLPVHDAAGHRAAVAFGGDRSAVSGDELQELNLWAGLLYSRLSEVRTRDRR 180 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +L+ RE CL+ A G T+ E+A + LS +TVN YL AT KLD+VNR+Q +AKAI Sbjct: 181 GPGSLSRREIECLRWAAAGKTTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAI 240 Query: 230 RFGYI 234 R G I Sbjct: 241 RAGLI 245 >gi|59940129|gb|AAX12603.1| LuxR-type transcriptional regulator [Aeromonas sp. ABJ] Length = 260 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 11/159 (6%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSCGIL 243 >gi|59940151|gb|AAX12614.1| LuxR-type transcriptional regulator [Aeromonas sp. 11m] Length = 260 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940111|gb|AAX12594.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] Length = 260 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 76/159 (47%), Gaps = 11/159 (6%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940109|gb|AAX12593.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-46] Length = 260 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|145301148|ref|YP_001143989.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853920|gb|ABO92241.1| transcriptional regulator, LuxR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 260 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 11/158 (6%) Query: 86 PIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-----FL 139 PI W + + + S+ + + L G++FP+ ++G + F S+ L Sbjct: 90 PIFWNKLDCDSPWLPSASREVMNLAADFGVRNGVSFPLHTPQGEHGILSFISKEKSNSDL 149 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE---RETSCLQLAGDGYTSEEIAE 196 M N V + + A Y + L+L K R ++LTE RE CL A +G TS EIA Sbjct: 150 MFEN-VPLLSFCASY-IFNSALQLIKSRPDLMKHLTELSDREKECLFWASEGKTSWEIAT 207 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S TVN +L T K D+ NR QAIAK+I G I Sbjct: 208 ILGISERTVNFHLNQVTNKTDSKNRNQAIAKSISSGII 245 >gi|59940127|gb|AAX12602.1| LuxR-type transcriptional regulator [Aeromonas sp. Manipal A1] gi|59940139|gb|AAX12608.1| LuxR-type transcriptional regulator [Aeromonas caviae] gi|59940153|gb|AAX12615.1| LuxR-type transcriptional regulator [Aeromonas sp. 12m] gi|59940161|gb|AAX12619.1| LuxR-type transcriptional regulator [Aeromonas sp. 19m] Length = 260 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|66277270|gb|AAY44566.1| LuxR-like protein [Aeromonas sp. ym3] Length = 260 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940091|gb|AAX12584.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940093|gb|AAX12585.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940103|gb|AAX12590.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-30] gi|59940105|gb|AAX12591.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940047|gb|AAX12562.1| LuxR-type transcriptional regulator [Aeromonas jandaei] gi|59940057|gb|AAX12567.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes] gi|59940079|gb|AAX12578.1| LuxR-type transcriptional regulator [Aeromonas caviae] gi|59940147|gb|AAX12612.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 70363] Length = 260 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940071|gb|AAX12574.1| LuxR-type transcriptional regulator [Aeromonas caviae] gi|59940073|gb|AAX12575.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] gi|59940077|gb|AAX12577.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes] gi|59940085|gb|AAX12581.1| LuxR-type transcriptional regulator [Aeromonas sp. AE-51] gi|59940087|gb|AAX12582.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940099|gb|AAX12588.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-24] gi|59940113|gb|AAX12595.1| LuxR-type transcriptional regulator [Aeromonas jandaei] Length = 260 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940095|gb|AAX12586.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940097|gb|AAX12587.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|89027173|gb|ABD59317.1| AhyR [Aeromonas hydrophila] Length = 260 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940157|gb|AAX12617.1| LuxR-type transcriptional regulator [Aeromonas sp. 15m] Length = 260 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940081|gb|AAX12579.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] gi|59940101|gb|AAX12589.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940163|gb|AAX12620.1| LuxR-type transcriptional regulator [Aeromonas sp. 26m] Length = 260 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940145|gb|AAX12611.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 21725] Length = 260 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/157 (33%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ +Q + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFQAAIRNVRVSLRDDEPQGALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|66277274|gb|AAY44568.1| LuxR-like protein [Aeromonas sp. CCRC 13880] Length = 260 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMCNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|66277266|gb|AAY44564.1| LuxR-like protein [Aeromonas sp. ym1] Length = 260 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 18/186 (9%) Query: 65 PNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR---LEGGLLP 114 P+ ++ Y D+ + + + LPI W + E G L V E GL Sbjct: 60 PDSWVQAYTDNHMLACDPVIRLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLR- 118 Query: 115 FAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + Sbjct: 119 -NGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMSNYIFEAAIRMVRFSLMDN 177 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR AIAK Sbjct: 178 DPKDPLTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIAKG 237 Query: 229 IRFGYI 234 + G++ Sbjct: 238 VSTGHV 243 >gi|59940107|gb|AAX12592.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes] Length = 258 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 20/184 (10%) Query: 65 PNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR---LEGGLLP 114 P ++TY D+ + + + LPI W + E G + V E GL Sbjct: 60 PISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLR- 118 Query: 115 FAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 119 -NGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQ 177 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK Sbjct: 178 QAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 235 Query: 229 IRFG 232 I G Sbjct: 236 ISSG 239 >gi|15964581|ref|NP_384934.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309327|ref|ZP_07588990.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307320063|ref|ZP_07599484.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15073759|emb|CAC45400.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021] gi|306894278|gb|EFN25043.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306900196|gb|EFN30814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 246 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 18/184 (9%) Query: 68 LIETYGDDFLFHFNSGLL----PIIWQSIQEETV-------IESSGQLSVRLEGGLLPFA 116 L+ T+ DFL ++S L P+I Q ++ T+ + + G++ + E + F Sbjct: 63 LMTTWPMDFLRRYDSARLIDGSPVI-QRLRRSTIPFTYDAHLLARGRVDGKGEAAICVFE 121 Query: 117 ------GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 G+ PV + F + ++++ + + + + E+ + Sbjct: 122 QANMPRGVYLPVHDAAGHRAAIAFGGDRSAVSDDEMQALNLWAGLLYSRLSEVRTRDRRG 181 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +L+ RE CL+ A G T+ E+A + LS +TVN YL AT KLD+VNR+Q +AKAIR Sbjct: 182 PGSLSRREIECLRWAAAGKTTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIR 241 Query: 231 FGYI 234 G I Sbjct: 242 AGLI 245 >gi|59940065|gb|AAX12571.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 258 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 20/184 (10%) Query: 65 PNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR---LEGGLLP 114 P ++TY D+ + + + LPI W + E G + V E GL Sbjct: 60 PISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLR- 118 Query: 115 FAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 119 -NGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQ 177 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK Sbjct: 178 QAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 235 Query: 229 IRFG 232 I G Sbjct: 236 ISSG 239 >gi|59940045|gb|AAX12561.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] gi|59940125|gb|AAX12601.1| LuxR-type transcriptional regulator [Aeromonas salmonicida subsp. salmonicida] gi|59940159|gb|AAX12618.1| LuxR-type transcriptional regulator [Aeromonas sp. 17m] Length = 260 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940135|gb|AAX12606.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|66277258|gb|AAY44560.1| LuxR-like protein [Aeromonas veronii] Length = 258 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 20/184 (10%) Query: 65 PNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR---LEGGLLP 114 P ++TY D+ + + + LPI W + E G + V E GL Sbjct: 60 PISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLR- 118 Query: 115 FAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 119 -NGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQ 177 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK Sbjct: 178 QAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 235 Query: 229 IRFG 232 I G Sbjct: 236 ISSG 239 >gi|66277260|gb|AAY44561.1| LuxR-like protein [Aeromonas veronii] Length = 258 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 20/184 (10%) Query: 65 PNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR---LEGGLLP 114 P ++TY D+ + + + LPI W + E G + V E GL Sbjct: 60 PISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLR- 118 Query: 115 FAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 119 -NGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQ 177 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK Sbjct: 178 QAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 235 Query: 229 IRFG 232 I G Sbjct: 236 ISSG 239 >gi|306021776|gb|ADM80305.1| LuxR [Aeromonas sobria] Length = 237 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 20/184 (10%) Query: 65 PNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR---LEGGLLP 114 P ++TY D+ + + + LPI W + E G + V E GL Sbjct: 42 PISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLR- 100 Query: 115 FAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 101 -NGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQ 159 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK Sbjct: 160 QAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 217 Query: 229 IRFG 232 I G Sbjct: 218 ISSG 221 >gi|66277278|gb|AAY44570.1| LuxR-like protein [Aeromonas sp. CCRC 13980] Length = 260 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|66277264|gb|AAY44563.1| LuxR-like protein [Aeromonas sp. SF8-170] Length = 260 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|66277284|gb|AAY44573.1| LuxR-like protein [Aeromonas veronii bv. sobria] Length = 258 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 20/184 (10%) Query: 65 PNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR---LEGGLLP 114 P ++TY D+ + + + LPI W + E G + V E GL Sbjct: 60 PISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLR- 118 Query: 115 FAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 119 -NGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQ 177 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK Sbjct: 178 QAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 235 Query: 229 IRFG 232 I G Sbjct: 236 ISSG 239 >gi|59940083|gb|AAX12580.1| LuxR-type transcriptional regulator [Aeromonas schubertii] Length = 260 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 11/154 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ V+ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPVLSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LG++ TVN +L T K ++NR QAIAK + Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGV 238 >gi|59940119|gb|AAX12598.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 258 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 20/184 (10%) Query: 65 PNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR---LEGGLLP 114 P ++TY D+ + + + LPI W + E G + V E GL Sbjct: 60 PISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLR- 118 Query: 115 FAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 119 -NGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQ 177 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK Sbjct: 178 QAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 235 Query: 229 IRFG 232 I G Sbjct: 236 ISSG 239 >gi|66277254|gb|AAY44558.1| LuxR-like protein [Aeromonas caviae] Length = 260 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E+ G + V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDEKARFLQEGSMDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITRERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ ++ ++ ++ ++ + + LTERET CL A +G TS EIA Sbjct: 145 SDLMLESSPILSWMSNYIFEAAIRIVRQSMREDDPQEPLTERETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|66736599|gb|AAY54303.1| quorum sensing trancriptional regulator [Aeromonas veronii] Length = 258 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 20/184 (10%) Query: 65 PNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR---LEGGLLP 114 P ++TY D+ + + + LPI W + E G + V E GL Sbjct: 60 PISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLR- 118 Query: 115 FAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 119 -NGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQ 177 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK Sbjct: 178 QAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 235 Query: 229 IRFG 232 I G Sbjct: 236 ISSG 239 >gi|66277280|gb|AAY44571.1| LuxR-like protein [Aeromonas caviae] Length = 258 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/184 (30%), Positives = 86/184 (46%), Gaps = 20/184 (10%) Query: 65 PNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR---LEGGLLP 114 P ++TY D+ + + + LPI W + E G + V E GL Sbjct: 60 PISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEFGLR- 118 Query: 115 FAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 119 -NGISFPLHGAPGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQ 177 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK Sbjct: 178 QAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 235 Query: 229 IRFG 232 I G Sbjct: 236 ISSG 239 >gi|59940133|gb|AAX12605.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|145300631|ref|YP_001143472.1| transcriptional activator AsaR [Aeromonas salmonicida subsp. salmonicida A449] gi|61218504|sp|P0A3J5|AHYR_AERHY RecName: Full=Transcriptional activator protein AhyR/AsaR gi|61218505|sp|P0A3J6|AHYR_AERSA RecName: Full=Transcriptional activator protein AhyR/AsaR gi|899145|emb|CAA61654.1| AhyR [Aeromonas hydrophila] gi|1519237|gb|AAB70018.1| transcriptional activator [Aeromonas salmonicida] gi|142853403|gb|ABO91724.1| transcriptional activator AsaR [Aeromonas salmonicida subsp. salmonicida A449] Length = 260 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940033|gb|AAX12555.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|66277256|gb|AAY44559.1| LuxR-like protein [Aeromonas caviae] Length = 260 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E+ G + V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDEKARFLQEGSMDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITRERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ ++ ++ ++ ++ + + LTERET CL A +G TS EIA Sbjct: 145 SDLMLESSPILSWMSNYIFEAAIRIVRQSMREDDPQEPLTERETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940049|gb|AAX12563.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. veronii] Length = 260 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNHVTRKTGSMNRYQAIAKGVSSG 241 >gi|66277276|gb|AAY44569.1| LuxR-like protein [Aeromonas sp. CCRC 13881] Length = 260 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940051|gb|AAX12564.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 11/159 (6%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W ++E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLEERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + A LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDAQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG++ TVN +L T K ++NR AIA + G + Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYHAIANGVSSGML 243 >gi|59940053|gb|AAX12565.1| LuxR-type transcriptional regulator [Aeromonas schubertii] Length = 260 Score = 68.6 bits (166), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W ++E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLEERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + A LT+RET CL A G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDAQEALTDRETECLFWASRGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIA I G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAMGISNG 241 >gi|59940117|gb|AAX12597.1| LuxR-type transcriptional regulator [Aeromonas media] Length = 260 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E+ G + V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDEKARFLQEGSMDVMGLAAEFGLR--NGISFPLHGATGENGILSFITRERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRQSMREEDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|117618881|ref|YP_855090.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560288|gb|ABK37236.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 261 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 12/158 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVI-------F 134 LPI W + E G L V E GL GI+FP+ +NG ++ Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGIILSFITAERA 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 +S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EI Sbjct: 145 SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 A LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 ACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 242 >gi|59940075|gb|AAX12576.1| LuxR-type transcriptional regulator [Aeromonas caviae] Length = 260 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W ++ G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLEGRARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940029|gb|AAX12553.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 261 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 12/158 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVI-------F 134 LPI W + E G L V E GL GI+FP+ +NG ++ Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGIILSFITAERA 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 +S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EI Sbjct: 145 SSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 A LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 ACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 242 >gi|330831695|ref|YP_004394647.1| LuxR family transcriptional regulator [Aeromonas veronii B565] gi|328806831|gb|AEB52030.1| Transcriptional regulator, LuxR family [Aeromonas veronii B565] Length = 258 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 77/158 (48%), Gaps = 11/158 (6%) Query: 86 PIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-----TSEFL 139 PI W + + + S+ + + L G++FP+ ++G + F ++ L Sbjct: 88 PIFWNKLDCDSPWLPSASRDVMNLAADFGVRNGVSFPLHTPQGEHGILSFITKDKSNSDL 147 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE---RETSCLQLAGDGYTSEEIAE 196 M N V + + A Y + L+L K R + LTE RE CL A +G TS EIA Sbjct: 148 MFEN-VPLLSFCASY-IFNSALQLIKSRPDMMKYLTELSDREKECLFWASEGKTSWEIAT 205 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S TVN +L T K D+ NR QAIAK I G I Sbjct: 206 ILGISERTVNFHLTQVTNKTDSKNRSQAIAKGITSGII 243 >gi|66277282|gb|AAY44572.1| LuxR-like protein [Aeromonas popoffii] Length = 260 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 11/159 (6%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W ++ G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLEGRARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAEQAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLDSSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940123|gb|AAX12600.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] gi|59940137|gb|AAX12607.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W ++ G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLEGRARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940035|gb|AAX12556.1| LuxR-type transcriptional regulator [Aeromonas caviae] Length = 260 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W ++ G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLEGRARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940063|gb|AAX12570.1| LuxR-type transcriptional regulator [Aeromonas popoffii] Length = 260 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 11/159 (6%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W ++ G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLEGRARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAEQAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLDSSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940115|gb|AAX12596.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W ++ G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLEGRARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940061|gb|AAX12569.1| LuxR-type transcriptional regulator [Aeromonas encheleia] gi|59940121|gb|AAX12599.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W ++ G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLEGRARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940067|gb|AAX12572.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W ++ G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLEGRARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|66277268|gb|AAY44565.1| LuxR-like protein [Aeromonas sp. ym2] Length = 260 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 18/184 (9%) Query: 65 PNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR---LEGGLLP 114 P+ ++ Y D+ + + + LPI W + E G L V E GL Sbjct: 60 PDSWVQAYTDNHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEFGLR- 118 Query: 115 FAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + Sbjct: 119 -NGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLLED 177 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RET CL A +G TS +IA LG++ TVN +L T K ++NR QAIAK Sbjct: 178 DPQDALTDRETECLFWASEGKTSGDIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 237 Query: 229 IRFG 232 + G Sbjct: 238 VSRG 241 >gi|59940031|gb|AAX12554.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W ++ G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLEGRARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|66277272|gb|AAY44567.1| LuxR-like protein [Aeromonas sp. ym4] Length = 260 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/157 (31%), Positives = 74/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGTLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLLEDDPQDALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|59940043|gb|AAX12560.1| LuxR-type transcriptional regulator [Aeromonas sobria] Length = 258 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 20/184 (10%) Query: 65 PNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR---LEGGLLP 114 P ++TY D+ + + + LPI W + E G + V E GL Sbjct: 60 PVSWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEFGLR- 118 Query: 115 FAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 GI+FP+ + G + F +S+ L+ ++ ++ ++ + L Sbjct: 119 -NGISFPLHGAAGETGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDSDQ 177 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIAK Sbjct: 178 HAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKG 235 Query: 229 IRFG 232 I G Sbjct: 236 ISSG 239 >gi|325293644|ref|YP_004279508.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325061497|gb|ADY65188.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 238 Score = 66.2 bits (160), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 76/155 (49%), Gaps = 5/155 (3%) Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEG-GLLPFAGIAFPVRLGFHKNGYVI-FTSEFL 139 S ++P W ++ S ++S L G G+ +G+ PV G N +++ F + Sbjct: 86 SSMMPQYWSLDDKDINCGSLLEVSTLLRGMGI--TSGLLVPVN-GMDGNRHLMNFAGDCD 142 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +L+ + E + + L + S LT+RE ++ G TS EIAE L Sbjct: 143 VLSQGSLNELCMIALHALEAYDRLCRAGSKLPSPLTKRELDVVRWTAQGKTSVEIAELLS 202 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S HTVN Y+ +A KLD VNR Q +AK IR G I Sbjct: 203 ISEHTVNTYMNNAIRKLDCVNRAQLVAKTIRLGLI 237 >gi|163758577|ref|ZP_02165664.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162283867|gb|EDQ34151.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 237 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 59/121 (48%), Gaps = 6/121 (4%) Query: 117 GIAFPVRLGFHKNGYVIF--TSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAARN 173 G+ FPV + + F T L A ++ G C + ++ K + A Sbjct: 119 GVYFPVHGSNGRRAAMAFYGTRPALSFAETGVL---GLCVLHAFDAYSKMTNKTGTKANG 175 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE L A +G TS EIA L LS HTVN Y+ SA KLD VNR Q +AKA+R Sbjct: 176 ITTRELEVLHWAANGKTSTEIAAILSLSDHTVNTYMNSAMRKLDCVNRTQLVAKALRLHL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|59940037|gb|AAX12557.1| LuxR-type transcriptional regulator [Aeromonas media] Length = 260 Score = 65.9 bits (159), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 11/159 (6%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E+ G + V E GL GI+FP+ ++G + F + Sbjct: 87 LPIYWNRLDEKARFLQEGSMDVMGLAAEFGLR--NGISFPLHGATGESGILSFITRERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRQSMREEDPQEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|227821018|ref|YP_002824988.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227340017|gb|ACP24235.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 246 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 32/62 (51%), Positives = 43/62 (69%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE CL+ A G T+ E+A + LS +TVN YL AT KLD+VNR+Q +AKA+R G Sbjct: 184 SLSRREIECLRWAAAGKTTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAMRAG 243 Query: 233 YI 234 I Sbjct: 244 LI 245 >gi|254473001|ref|ZP_05086399.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062] gi|211957722|gb|EEA92924.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062] Length = 239 Score = 65.5 bits (158), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 71/152 (46%), Gaps = 5/152 (3%) Query: 86 PIIWQSIQEETVIESSGQ--LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 P +W S+ + + ++ Q LS + G+ + G+ PV G +IF + L Sbjct: 89 PFLWSSVARDRNLTAAAQQVLSEARDYGM--YDGVCVPVHGLQGYQGMLIFGGPEVRLNE 146 Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSV 202 I H EL ++ R+ LT RE CL+ + G TS EI++ L +S Sbjct: 147 REISVLHLVGIYASNKVRELVGANTNRPRHRLTPRELECLKWSAAGKTSWEISQILNISQ 206 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 HT + YL SA KL A NR A+A+ R G I Sbjct: 207 HTADWYLASAARKLHAANRTHAVAEGFRLGLI 238 >gi|307943595|ref|ZP_07658939.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307773225|gb|EFO32442.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 232 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 35/75 (46%), Positives = 45/75 (60%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F L + ++ +LT RE CL+ + +G TS EIAEKLG+S HT + YL AT KL A Sbjct: 157 FAALLFEEATNPTDLTPREVECLKWSSNGLTSSEIAEKLGISRHTADWYLKEATQKLGAQ 216 Query: 220 NRIQAIAKAIRFGYI 234 NR A+ A R G I Sbjct: 217 NRTHAVMIAYRKGLI 231 >gi|166798330|gb|ABY89693.1| transcriptional regulator [Mesorhizobium loti] Length = 243 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 82/184 (44%), Gaps = 15/184 (8%) Query: 63 DIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 D P +E Y D + H P W+ + I+ S + G Sbjct: 62 DWPGEWLERYVARNYVDHDPVVSHMKQLQAPFQWREASQSIRIDKSSGEVMGDAGAFKLR 121 Query: 116 AGIAFPVRLGFHKNGYVIFTS---EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 G+AFP+ +G ++ S E + L+ + + ++L S + Sbjct: 122 DGLAFPL---VTLDGQIVMVSLGGEAVELSAAEFGQVSLVSTYAVGRAMQLHTMASKSID 178 Query: 173 N--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + LT RE CLQ A G + EI++ LG+S HT +L +A KL AVNR+QA+A+AIR Sbjct: 179 HIVLTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIR 238 Query: 231 FGYI 234 GYI Sbjct: 239 RGYI 242 >gi|304394107|ref|ZP_07376030.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130] gi|303293547|gb|EFL87924.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130] Length = 240 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 14/126 (11%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-GACYQVITDFLELFKKRSSAAR--- 172 G PV G G ++F+ NE+++ GA +++++L + SA Sbjct: 120 GACCPVNDGKGNRGGLVFS------GNELVLNPDDGAMLHLLSNYLYDHLVQISATSVTR 173 Query: 173 ----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +L+ RE CL A G TS+E A L LS HTV YL A KL+AVNR+ A+AKA Sbjct: 174 SEMPSLSGREMDCLSHAALGKTSKETARDLELSDHTVTHYLALACKKLEAVNRVHAVAKA 233 Query: 229 IRFGYI 234 +R G + Sbjct: 234 LRLGLL 239 >gi|13474692|ref|NP_106261.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14025447|dbj|BAB52047.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 243 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/62 (53%), Positives = 42/62 (67%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE CLQ A G + EI++ LG+S HT +L +A KL AVNR+QA+A+AIR G Sbjct: 181 ELTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRG 240 Query: 233 YI 234 YI Sbjct: 241 YI 242 >gi|260461917|ref|ZP_05810162.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259032164|gb|EEW33430.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 243 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/62 (53%), Positives = 42/62 (67%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE CLQ A G + EI++ LG+S HT +L +A KL AVNR+QA+A+AIR G Sbjct: 181 ELTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRG 240 Query: 233 YI 234 YI Sbjct: 241 YI 242 >gi|166850622|gb|ABY91283.1| transcriptional regulator [Mesorhizobium huakuii] Length = 243 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 33/62 (53%), Positives = 42/62 (67%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE CLQ A G + EI++ LG+S HT +L +A KL AVNR+QA+A+AIR G Sbjct: 181 ELTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRG 240 Query: 233 YI 234 YI Sbjct: 241 YI 242 >gi|319785576|ref|YP_004145052.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171464|gb|ADV15002.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 243 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/61 (54%), Positives = 42/61 (68%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE CLQ A G + EI++ LG+S HT +L +A KL AVNR+QA+A+AIR GY Sbjct: 182 LTPRERECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGY 241 Query: 234 I 234 I Sbjct: 242 I 242 >gi|59940155|gb|AAX12616.1| LuxR-type transcriptional regulator [Aeromonas sp. 13m] Length = 260 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS +IA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFCASEGKTSGDIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L ++ TVN +L T K ++NR QAIAK + G Sbjct: 205 CILRITERTVNYHLNHVTRKTVSMNRYQAIAKGVSSG 241 >gi|15889561|ref|NP_355242.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157444|gb|AAK88027.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 238 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 3/154 (1%) Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI-FTSEFLM 140 S ++P W S+++ + S +V G + +G+ PV G N +++ F + Sbjct: 86 SSMMPQYW-SLEDPEMACGSLVDAVNSVGSMGITSGLMVPVN-GMSGNRHLMNFAGDRDT 143 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L + E + + L + S LT+RE ++ G TS EIAE L + Sbjct: 144 LPQASLNELCMIALHALETYDRLCRVASKGPSPLTKRELDVVRWTAQGKTSVEIAELLSI 203 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S HTVN Y+ +A KLD VNR Q +AK IR I Sbjct: 204 SEHTVNTYMNNAMRKLDCVNRTQLVAKTIRLRLI 237 >gi|59940059|gb|AAX12568.1| LuxR-type transcriptional regulator [Aeromonas allosaccharophila] Length = 260 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 73/157 (46%), Gaps = 11/157 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W + E G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITAERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLRDDDPQEALTDRETECLFWASEGKTSSEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TV +L T K ++ R QAIAK + G Sbjct: 205 CILGITERTVIYHLNQVTRKTGSMTRYQAIAKGVSSG 241 >gi|59940041|gb|AAX12559.1| LuxR-type transcriptional regulator [Aeromonas eucrenophila] Length = 260 Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 11/154 (7%) Query: 85 LPIIWQSIQEETVIESSGQLSVR---LEGGLLPFAGIAFPVRLGFHKNGYVIF------T 135 LPI W ++ G L V E GL GI+FP+ +NG + F + Sbjct: 87 LPIYWNRLEGRARFLQEGSLDVMGLAAEFGLR--NGISFPLHGAAGENGILSFITSERAS 144 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 145 SDLLLESSPILSWMSNYIFEAAIRIVRVSLREHDPHEALTDRETECLFWASEGKTSGEIA 204 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LG++ TVN +L T K ++NR AIAK + Sbjct: 205 CILGITERTVNYHLNQVTRKTGSMNRYHAIAKGV 238 >gi|94497651|ref|ZP_01304219.1| putative transcription regulator protein [Sphingomonas sp. SKA58] gi|94422868|gb|EAT07901.1| putative transcription regulator protein [Sphingomonas sp. SKA58] Length = 208 Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 8/127 (6%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARN 173 A I P+ L F + G F S + + A A + F++ + K ++ AR+ Sbjct: 78 AAIVVPIHLPFGQIGAASFLSPEPDTNDLSDAYSSAADALAVLARAFVQSYSKVTARARH 137 Query: 174 ------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE CL+ A G T+EEI LGL TV ++ SA+VKLDAVNR Q + K Sbjct: 138 DLASISLTKREVECLRWAAAGKTNEEIGIILGLQRTTVRFHIRSASVKLDAVNRDQTMFK 197 Query: 228 AIRFGYI 234 A + G++ Sbjct: 198 AAQLGFL 204 >gi|326391343|ref|ZP_08212882.1| transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] gi|325992606|gb|EGD51059.1| transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] Length = 257 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTE 176 IA P+ + GY+ ++ + +E+++ Y++++D++ +F ++ +R L E Sbjct: 139 IAIPLIIDDEIIGYLDLSTIKDSMVDEMVVIVELLAYKIVSDYIRMFGNKAKNSRVKLKE 198 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L+L GY IA++LG+S++TVN + + KLD + +AIAKAIR G I Sbjct: 199 EQLKVLKLVTKGYKDIVIAKELGISINTVNYHKRNIFKKLDVRSTREAIAKAIRMGLI 256 >gi|117619760|ref|YP_858670.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561167|gb|ABK38115.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 203 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/77 (49%), Positives = 45/77 (58%), Gaps = 3/77 (3%) Query: 161 LELFKKRSSAARNLTE---RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L+L K R + LTE RE CL A +G TS EIA LG+S TVN +L T K D Sbjct: 112 LQLIKSRPDLMKYLTELSDREKECLFWASEGKTSWEIATILGISERTVNFHLNQVTNKTD 171 Query: 218 AVNRIQAIAKAIRFGYI 234 + NR QAIAK+I G I Sbjct: 172 SKNRNQAIAKSISSGII 188 >gi|310686584|gb|ADP02958.1| LuxR [Cloning vector pLR3] gi|310686589|gb|ADP02962.1| LuxR [Cloning vector pLR4] Length = 269 Score = 62.8 bits (151), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 6/166 (3%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + NS PI W + V + S + + L G +FP+ + G + Sbjct: 98 DPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKSSGL-ITGFSFPIHTANNGFGMLS 156 Query: 134 FT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDG 188 F SE + + + A ++ ++ ++K + + +LT+RE CL A +G Sbjct: 157 FAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACEG 216 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S +I++ LG S TV +L +A +KL+ NR Q+I+KAI G I Sbjct: 217 KSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 262 >gi|155233|gb|AAA27541.1| luxR protein [Aliivibrio fischeri] gi|455385|gb|AAA27551.1| regulatory protein [Aliivibrio fischeri] gi|225902|prf||1403259A luxR gene Length = 250 Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 80/166 (48%), Gaps = 6/166 (3%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + NS PI W + V + S + + L G +FP+ + G + Sbjct: 79 DPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKSSGL-ITGFSFPIHTANNGFGMLS 137 Query: 134 FT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDG 188 F SE + + + A ++ ++ ++K + + +LT+RE CL A +G Sbjct: 138 FAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACEG 197 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S +I++ LG S TV +L +A +KL+ NR Q+I+KAI G I Sbjct: 198 KSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 243 >gi|59714108|ref|YP_206883.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio fischeri ES114] gi|462557|sp|P35327|LUXS_VIBF1 RecName: Full=Transcriptional activator protein luxR gi|295436|gb|AAA27542.1| putative [Vibrio fischeri ES114] gi|59482356|gb|AAW87995.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio fischeri ES114] Length = 250 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 79/155 (50%), Gaps = 8/155 (5%) Query: 86 PIIWQSIQEETVI-ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT-SEFLMLAN 143 PI W +++T+ ES + E GL+ G +FP+ + G + F S+ + + Sbjct: 91 PINWNVFEKKTIKKESPNVIKEAQESGLI--TGFSFPIHTASNGFGMLSFAHSDKDIYTD 148 Query: 144 EVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + + A ++ ++ ++K R + LT+RE CL A +G ++ +I++ LG Sbjct: 149 SLFLHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKECLAWASEGKSTWDISKILG 208 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV +L + +KL+ NR Q+I+KAI G I Sbjct: 209 CSERTVTFHLTNTQMKLNTTNRCQSISKAILTGAI 243 >gi|218514308|ref|ZP_03511148.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 254 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 40/80 (50%), Positives = 43/80 (53%), Gaps = 3/80 (3%) Query: 148 EAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 E CY I F L + R+ R LT+RE CL G TS EIAE L LS HT Sbjct: 155 EMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEIAEILVLSEHT 214 Query: 205 VNAYLGSATVKLDAVNRIQA 224 VN YL AT KLD VNR QA Sbjct: 215 VNHYLNRATKKLDTVNRTQA 234 >gi|330958109|gb|EGH58369.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 254 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 42/67 (62%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A NR+QA Sbjct: 183 KMRSCTAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQA 242 Query: 225 IAKAIRF 231 + +A+ + Sbjct: 243 VVRAVHY 249 >gi|218662807|ref|ZP_03518737.1| LuxR family transcriptional regulator [Rhizobium etli IE4771] Length = 102 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 6/102 (5%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLAGDGYTSEE 193 ML+ E G ++ D + +F K + LT+RE+ ++ +G TS E Sbjct: 1 MLSGEREEPDQGEIADLLLDAMRIFDKLYEEILTQEMSGRLTQRESEIVKWTSEGKTSAE 60 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 IA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 61 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVS 102 >gi|148557255|ref|YP_001264837.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148502445|gb|ABQ70699.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 301 Score = 62.4 bits (150), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 7/129 (5%) Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--- 167 GL P G+ P+ + H G++ + + + + G +I ++ + F R Sbjct: 172 GLNP--GLTVPLFIPGHHYGFITAVGDGGLDGWDAAADRAGPTLAMIANYFDNFAIRRFG 229 Query: 168 --SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +++L++RE CL + G T E+IA L LS TV YL KLDAVNR A+ Sbjct: 230 GPPKESQSLSKRELECLTWSARGKTVEDIAVILDLSADTVRVYLKRVNQKLDAVNRSHAV 289 Query: 226 AKAIRFGYI 234 AKA+ G I Sbjct: 290 AKAMCLGMI 298 >gi|218672306|ref|ZP_03521975.1| hypothetical protein RetlG_12042 [Rhizobium etli GR56] Length = 109 Score = 62.0 bits (149), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 34/63 (53%), Positives = 41/63 (65%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ A LT E CL+LAG G TSEEIA+ T+N+YL SAT KL A NR AIA+ Sbjct: 42 AAGALPLTSGELRCLELAGKGLTSEEIADASDYRTETINSYLKSATKKLGAANRAHAIAE 101 Query: 228 AIR 230 AIR Sbjct: 102 AIR 104 >gi|462556|sp|P12746|LUXR_VIBFI RecName: Full=Transcriptional activator protein luxR gi|5726578|gb|AAD48473.1|AF170104_1 regulatory protein LuxR [Aliivibrio fischeri] gi|155231|gb|AAA27540.1| luxR protein [Aliivibrio fischeri] gi|59800242|gb|AAX07424.1| LuxR [Expression vector pLuxR-wt] gi|59800247|gb|AAX07428.1| LuxR-mut [Expression vector pHTSUB-105] gi|60594754|gb|AAX29978.1| LuxR [Cloning vector pHTSUB-106] Length = 250 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE-GGLLPFAGIAFPVRLGFHKNGYV 132 D + + NS PI W + V + S + + GL+ G +FP+ + G + Sbjct: 79 DPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLI--TGFSFPIHTANNGFGML 136 Query: 133 IFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGD 187 F SE + + + A ++ ++ ++K + + +LT+RE CL A + Sbjct: 137 SFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACE 196 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S +I++ LG S TV +L +A +KL+ NR Q+I+KAI G I Sbjct: 197 GKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 243 >gi|197337087|ref|YP_002158591.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11] gi|197314339|gb|ACH63788.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11] Length = 252 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE-GGLLPFAGIAFPVRLGFHKNGYV 132 D + + NS PI W + V + S + + GL+ G +FP+ + G + Sbjct: 81 DPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLI--TGFSFPIHTANNGFGML 138 Query: 133 IFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGD 187 F SE + + + A ++ ++ ++K + + +LT+RE CL A + Sbjct: 139 SFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACE 198 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S +I++ LG S TV +L +A +KL+ NR Q+I+KAI G I Sbjct: 199 GKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 245 >gi|28871673|ref|NP_794292.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28854925|gb|AAO57987.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato str. DC3000] Length = 254 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 42/67 (62%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A NR+QA Sbjct: 183 KMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQA 242 Query: 225 IAKAIRF 231 + +A+ + Sbjct: 243 VVRAVHY 249 >gi|213966697|ref|ZP_03394848.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato T1] gi|301383210|ref|ZP_07231628.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato Max13] gi|302059053|ref|ZP_07250594.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato K40] gi|302133729|ref|ZP_07259719.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928547|gb|EEB62091.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato T1] gi|331018431|gb|EGH98487.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 254 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 42/67 (62%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A NR+QA Sbjct: 183 KMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQA 242 Query: 225 IAKAIRF 231 + +A+ + Sbjct: 243 VVRAVHY 249 >gi|59940131|gb|AAX12604.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 62.0 bits (149), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 7/155 (4%) Query: 85 LPIIWQSIQEETVIESSGQLSVR-LEGGLLPFAGIAFPVRLGFHKNGYVIF------TSE 137 LP W + E G V L GI+FP+ +N + F +S+ Sbjct: 87 LPNYWNRLDERARFLPEGSPDVMGLAAEFRLRHGISFPLHGAAGENRILSFITAERASSD 146 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L+ ++ ++ +Q + + + LT+RET CL A +G TS EIA Sbjct: 147 LLLESSPILSWMSNYIFQAAIRIVRVSLREDEPQEALTDRETECLFWASEGKTSGEIACI 206 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LG++ TVN +L T K ++NR QAIAK + G Sbjct: 207 LGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSG 241 >gi|218461489|ref|ZP_03501580.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli Kim 5] Length = 234 Score = 61.6 bits (148), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 6/103 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLAGDGYTSE 192 L+L+ E G ++ D + +F K + LT+RE+ ++ +G TS Sbjct: 132 LVLSGEREEPDQGEIADLLLDAMRIFDKLYEEILTQEMSGRLTQRESEIVKWTSEGKTSA 191 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 192 EIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVS 234 >gi|297489|emb|CAA68561.1| luxR [Aliivibrio fischeri] Length = 250 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 47/167 (28%), Positives = 82/167 (49%), Gaps = 8/167 (4%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE-GGLLPFAGIAFPVRLGFHKNGYV 132 D + + NS PI W + V + S + + GL+ G +FP+ + G + Sbjct: 79 DPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLI--TGFSFPIHTANNGFGML 136 Query: 133 IFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGD 187 F SE + + + A ++ ++ ++K + + +LT+RE CL A + Sbjct: 137 SFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACE 196 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S +I++ LG S TV +L +A +KL+ NR Q+I+KAI G I Sbjct: 197 GKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 243 >gi|289625636|ref|ZP_06458590.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646651|ref|ZP_06477994.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298488410|ref|ZP_07006441.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157035|gb|EFH98124.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868197|gb|EGH02906.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 254 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 42/67 (62%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A NR+QA Sbjct: 183 KMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQA 242 Query: 225 IAKAIRF 231 + +A+ + Sbjct: 243 VVRAVHY 249 >gi|71736210|ref|YP_276356.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482085|ref|ZP_05636126.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71556763|gb|AAZ35974.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322567|gb|EFW78660.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320330180|gb|EFW86166.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330875327|gb|EGH09476.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330987492|gb|EGH85595.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011444|gb|EGH91500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 254 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 42/67 (62%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A NR+QA Sbjct: 183 KMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQA 242 Query: 225 IAKAIRF 231 + +A+ + Sbjct: 243 VVRAVHY 249 >gi|86356279|ref|YP_468171.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280381|gb|ABC89444.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 234 Score = 61.6 bits (148), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 57/103 (55%), Gaps = 6/103 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLAGDGYTSE 192 L+L+ E G ++ D + +F K + LT+RE+ ++ +G TS Sbjct: 132 LVLSGEREEPDQGEIADMLLDAMRIFDKLYEEILTPEMSGRLTQRESEIVKWTSEGKTSA 191 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 192 EIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVS 234 >gi|241203072|ref|YP_002974168.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856962|gb|ACS54629.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 234 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 43/62 (69%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE+ ++ +G TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G Sbjct: 173 LTQRESEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232 Query: 234 IC 235 + Sbjct: 233 VS 234 >gi|330879513|gb|EGH13662.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 254 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 42/67 (62%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K RS A LT RE CL + +G T+ EIA++L SV T+ +L SA KL A NR+QA Sbjct: 183 KMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATITLHLNSAMQKLGAKNRVQA 242 Query: 225 IAKAIRF 231 + +A+ + Sbjct: 243 VVRAVHY 249 >gi|218678644|ref|ZP_03526541.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 172 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 56/103 (54%), Gaps = 6/103 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERETSCLQLAGDGYTSE 192 L+L+ E G ++ D + +F K + LT+RE ++ +G TS Sbjct: 70 LVLSGERQEPDQGEIADMLLDAMRIFDKLYEEILTPEMSGRLTQREQEIVKWTSEGKTSA 129 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 130 EIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVT 172 >gi|115265509|dbj|BAF32771.1| transcriptional regulator of LuxR family [Pseudomonas syringae pv. actinidiae] gi|330965240|gb|EGH65500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 254 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 42/67 (62%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K RS A LT RE CL + +G T+ EIA++L SV T+ +L SA KL A NR+QA Sbjct: 183 KMRSCNAIKLTRRERECLSWSAEGLTAREIADQLNRSVATITLHLNSAMQKLGAKNRVQA 242 Query: 225 IAKAIRF 231 + +A+ + Sbjct: 243 VVRAVHY 249 >gi|329851246|ref|ZP_08266003.1| bacterial regulatory protein, luxR family protein [Asticcacaulis biprosthecum C19] gi|328840092|gb|EGF89664.1| bacterial regulatory protein, luxR family protein [Asticcacaulis biprosthecum C19] Length = 247 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/61 (52%), Positives = 40/61 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT ET+CL+LA G TSEEI ++ L+ TVN+Y+ T KL A NR QAIA A+R Sbjct: 186 LTAGETTCLELASRGMTSEEIGAQMDLTTETVNSYMKLITRKLGARNRSQAIADALRLNL 245 Query: 234 I 234 I Sbjct: 246 I 246 >gi|116250449|ref|YP_766287.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255097|emb|CAK06171.1| putative GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 234 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 43/61 (70%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE+ ++ +G TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G Sbjct: 173 LTQRESEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232 Query: 234 I 234 + Sbjct: 233 V 233 >gi|330888704|gb|EGH21365.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 254 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 41/67 (61%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K RS A LT RE CL + +G T+ EIA+ L SV TV +L SA KL A NR+QA Sbjct: 183 KMRSCNAIKLTRRERECLSWSAEGLTAREIADHLNRSVATVTLHLNSAMQKLGAKNRVQA 242 Query: 225 IAKAIRF 231 + +A+ + Sbjct: 243 VVRAVHY 249 >gi|222086655|ref|YP_002545189.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724103|gb|ACM27259.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 243 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 49/92 (53%), Gaps = 7/92 (7%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 N ++++AH Y I + S L+ RE ++ G TS EI + L LS Sbjct: 158 NMIMLQAHD-IYNCIK------RNDGSVLHMLSARELEVVRWTAQGKTSVEIGQILSLSD 210 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 211 HTVNAYMMNAIKKLDCVNRTQLVAKAIRLKLI 242 >gi|70732607|ref|YP_262370.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens Pf-5] gi|68346906|gb|AAY94512.1| autoinducer-binding transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 252 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 32/72 (44%), Positives = 45/72 (62%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + +L K S +LT RE CL+ A +G TS EIAE+L S T+N +L SA KL A Sbjct: 176 YPQLSKCVRSYPVDLTRRERECLKWAAEGMTSGEIAERLQRSQATINLHLTSAMHKLGAR 235 Query: 220 NRIQAIAKAIRF 231 NR+QA+ +A+ + Sbjct: 236 NRVQAVVRAVHY 247 >gi|330969598|gb|EGH69664.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 254 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 42/67 (62%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A NR+QA Sbjct: 183 KIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQA 242 Query: 225 IAKAIRF 231 + +A+ + Sbjct: 243 VVRAVHY 249 >gi|222149400|ref|YP_002550357.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736383|gb|ACM37346.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 241 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+ G TS EI + L LS HT+NAY+ +A KLD VNR Q +AKAIR Sbjct: 180 LSVRELEVLRWTAQGKTSVEIGQILSLSDHTINAYMTTAMKKLDCVNRTQLVAKAIRLKL 239 Query: 234 I 234 I Sbjct: 240 I 240 >gi|66047443|ref|YP_237284.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63258150|gb|AAY39246.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 254 Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 42/67 (62%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A NR+QA Sbjct: 183 KIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQA 242 Query: 225 IAKAIRF 231 + +A+ + Sbjct: 243 VVRAVHY 249 >gi|116253270|ref|YP_769108.1| LuxR/GerE family transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257918|emb|CAK09016.1| putative LuxR/GerE family transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 238 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 54/119 (45%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 AG+A P + F E L I E + + + + A L+ Sbjct: 119 AGVAMPTTAADGQRLVFWFCGERAALGQSEINELVMIILHALDAYNAVKRNEECAHNALS 178 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++ G TS EI + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 179 NRELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 237 >gi|330952863|gb|EGH53123.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 254 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 42/67 (62%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A NR+QA Sbjct: 183 KIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQA 242 Query: 225 IAKAIRF 231 + +A+ + Sbjct: 243 VVRAVHY 249 >gi|163761139|ref|ZP_02168216.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162281690|gb|EDQ31984.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 246 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 41/116 (35%), Positives = 54/116 (46%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 G+ FPV+ G + V F L+ + ++ ++ +A L Sbjct: 128 GVYFPVQDGRGQRFAVCFMGARKPLSATELPSLAMFATLLVDQLSQITANEDTAKLVLNA 187 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RET LQ +G TS EIA GLS HTVN Y AT KL NR QA+ +AIR G Sbjct: 188 RETEVLQWTAEGKTSAEIARITGLSEHTVNHYATIATQKLGCSNRTQAVVQAIRLG 243 >gi|218515768|ref|ZP_03512608.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 234 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 42/62 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE ++ +G TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G Sbjct: 173 LTQREADIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232 Query: 234 IC 235 + Sbjct: 233 VS 234 >gi|294010385|ref|YP_003543845.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292673715|dbj|BAI95233.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 265 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 6/81 (7%) Query: 160 FLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 F++ + K ++ AR +LT+RE CL+ A G T+EEI LGL TV ++ SA+ Sbjct: 181 FVQSYVKVTARARPGLGSISLTKREVECLRWAAAGKTNEEIGIILGLQRTTVRFHIRSAS 240 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 VKLDAVNR Q + KA + G++ Sbjct: 241 VKLDAVNRDQTMFKAAQLGFL 261 >gi|190890329|ref|YP_001976871.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695608|gb|ACE89693.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 234 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 42/62 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE ++ +G TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G Sbjct: 173 LTQREAEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232 Query: 234 IC 235 + Sbjct: 233 VS 234 >gi|209547895|ref|YP_002279812.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533651|gb|ACI53586.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 234 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 42/62 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE ++ +G TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G Sbjct: 173 LTQREQEIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGL 232 Query: 234 IC 235 + Sbjct: 233 VT 234 >gi|209550397|ref|YP_002282314.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536153|gb|ACI56088.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 241 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 54/119 (45%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 AG+A P + F E L + E + + + + A L+ Sbjct: 122 AGVAMPTIAANGQRLVFWFCGERAALGQSEVNELAMIILHALDAYNAVKRNEECAHNALS 181 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++ G TS EI + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 182 TRELEVVRWTAQGKTSIEIGQILALSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240 >gi|229589152|ref|YP_002871271.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361018|emb|CAY47880.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 254 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 19/128 (14%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-----------LELFK 165 G++ P+ L + G+ T A+ V+ +A Q ++DF LF Sbjct: 128 GVSVPIHLP--RGGFASLTGLRTGKAHSVLQDAQ----QTLSDFSLISHALQEAAYPLFS 181 Query: 166 K--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K R+ +LT+RE CL+ A DG T+ EIA +L S+ V +L SA KL A NR+Q Sbjct: 182 KELRTYPHIHLTKRERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKLGAKNRVQ 241 Query: 224 AIAKAIRF 231 A+ +A + Sbjct: 242 AVVRATHY 249 >gi|218516149|ref|ZP_03512989.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 122 Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 159 DFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 D + ++ +A N L+ RE ++ G TS EI + L LS HTVNAY+ +A KLD Sbjct: 45 DAYNIVRRNEESAHNALSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLD 104 Query: 218 AVNRIQAIAKAIRFGYI 234 VNR Q +AKAIR I Sbjct: 105 CVNRTQLVAKAIRLKLI 121 >gi|190892823|ref|YP_001979365.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190698102|gb|ACE92187.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|327189482|gb|EGE56638.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 241 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 55/119 (46%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 AG+A P + F E L + E + + + + SA L+ Sbjct: 122 AGVAMPTIAVDGRRLVFWFCGERAALGQSEVNELAIIILHALDAYNTVRRNEESAHNALS 181 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++ G TS EI + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 182 ARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240 >gi|90420983|ref|ZP_01228887.1| possible transcriptional regulator, lysR family [Aurantimonas manganoxydans SI85-9A1] gi|90334761|gb|EAS48537.1| possible transcriptional regulator, lysR family [Aurantimonas manganoxydans SI85-9A1] Length = 294 Score = 59.7 bits (143), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 57/120 (47%) Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 AG FPV NG + F L E I E H + + + + L Sbjct: 174 LAGAFFPVHGLTAFNGALSFAGRSCALPAEAIRELHLFAFALFGMLAAARFEENRRNNPL 233 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE CL+LA G TS EI L LS +T++ YL +A KLDA NR A+A A + GY+ Sbjct: 234 SVRERDCLKLAMLGKTSSEIGIILSLSEYTISQYLTAAQRKLDASNRTHAVALAAQLGYL 293 >gi|241205786|ref|YP_002976882.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859676|gb|ACS57343.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 241 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 35/77 (45%), Positives = 43/77 (55%), Gaps = 1/77 (1%) Query: 159 DFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 D K+ A N L+ RE ++ G TS EI + L LS HTVNAY+ +A KLD Sbjct: 164 DAYNAVKRNEECAHNALSTRELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLD 223 Query: 218 AVNRIQAIAKAIRFGYI 234 VNR Q +AKAIR I Sbjct: 224 CVNRTQLVAKAIRLKLI 240 >gi|46275753|dbj|BAD15091.1| probable transcriptional regulator [Pseudomonas azotoformans] Length = 202 Score = 59.3 bits (142), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 63/128 (49%), Gaps = 19/128 (14%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-----------LELFK 165 G++ P+ L + G+ T A V+ +A Q ++DF LF Sbjct: 76 GVSVPIHLP--RGGFASLTGLRTGNARNVLQDAQ----QTLSDFGLISHALQEAAYPLFS 129 Query: 166 K--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K R+ +LT+RE CL+ A DG T+ EIA +L S+ V +L SA KL A NR+Q Sbjct: 130 KELRTYPHIHLTKRERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKLGAKNRVQ 189 Query: 224 AIAKAIRF 231 A+ +A + Sbjct: 190 AVVRATHY 197 >gi|218682848|ref|ZP_03530449.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 230 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 41/119 (34%), Positives = 54/119 (45%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 AGIA P + F E LA + E + + + + L+ Sbjct: 111 AGIAMPTITADGQRLVFWFCGERAALAQSEVNELAMIILHALDAYNAVKRNEECTHNALS 170 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++ G TS EI + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 171 IRELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 229 >gi|238653897|emb|CAV30841.1| Transcriptional Regulator, LuxR family [magnetite-containing magnetic vibrio] Length = 261 Score = 58.9 bits (141), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANE--VIIEAHGACYQVITDFLELFKKRSSAARN- 173 GI+FP+R G N + M +E +++ ++I + A+N Sbjct: 137 GISFPLRAGPDINDWGGLGLSTRMDDDEFSAVLDERRDYLRLIAQVFHAVTQSRPLAKNA 196 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTE+E L L G +++IA+KLG+S V+ ++ AT KL + R QA+A+AIR Sbjct: 197 LLLTEKEKQALSLTAKGLKTKQIADKLGMSDKAVDQHIARATAKLASTTRTQAVAEAIRL 256 >gi|86358681|ref|YP_470573.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86282783|gb|ABC91846.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 241 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 55/119 (46%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 AG+A P + F E L + E + + + + +A L+ Sbjct: 122 AGVAMPTIAVDGRRLVFWFCGERAALGQSEVNELAIVILHTLDAYNAVRRNEENAHSALS 181 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++ G TS EI + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 182 ARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240 >gi|218662896|ref|ZP_03518826.1| LuxR family transcriptional regulator [Rhizobium etli IE4771] Length = 236 Score = 58.5 bits (140), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 33/70 (47%), Positives = 41/70 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + SA L+ RE ++ G TS EI + L LS HTVNAY+ +A KLD VNR Q Sbjct: 166 RNEESAHNALSARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQL 225 Query: 225 IAKAIRFGYI 234 +AKAIR I Sbjct: 226 VAKAIRLKLI 235 >gi|298249219|ref|ZP_06973023.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547223|gb|EFH81090.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1032 Score = 58.5 bits (140), Expect = 7e-07, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 41/62 (66%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS+ L+ RE S LQL +GY++++IAE L LS+HTV ++ KL A NR QA+A Sbjct: 962 RSTPYEPLSARERSVLQLMAEGYSNQQIAEHLILSLHTVKLHVKHLLAKLGATNRTQAVA 1021 Query: 227 KA 228 +A Sbjct: 1022 RA 1023 >gi|83859373|ref|ZP_00952894.1| Transcriptional regulatory protein, LuxR family protein [Oceanicaulis alexandrii HTCC2633] gi|83852820|gb|EAP90673.1| Transcriptional regulatory protein, LuxR family protein [Oceanicaulis alexandrii HTCC2633] Length = 241 Score = 58.2 bits (139), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 90/194 (46%), Gaps = 21/194 (10%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFN-------SGLLPIIWQSIQEETVIESSGQLSVRL 108 ++D + P + + Y ++ L+ + + L P W +++ T + S RL Sbjct: 52 SFDFEYNTFPEAMQDVYFEERLYDHDPVTSRAATALQPQFWFDVEQTT---PGTRFSQRL 108 Query: 109 -----EGGLLPFAGIAFPVRLGFHKNGYVI---FTSEFLMLANEVIIEAHGACYQVITDF 160 + G + G PV + +V F+ F + A ++ + G C ++ + Sbjct: 109 FELLRQSGFV--DGFTIPVFGPYGLAAFVACGRFSGAFNLTAIQLRMLQLG-CQELYSRT 165 Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + L + A +L+ERE LQ G ++ IA LG+S HTV+ + A VKL+A N Sbjct: 166 IMLRDYDAPAPPHLSEREVEILQWLARGKSNAVIAAILGVSPHTVDTIMRRAFVKLNASN 225 Query: 221 RIQAIAKAIRFGYI 234 RI A+ KA+R G I Sbjct: 226 RIAAVLKALRVGLI 239 >gi|134100725|ref|YP_001106386.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] gi|133913348|emb|CAM03461.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 202 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 42/61 (68%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ A G T+ EIA++LGL+ HTV YL +A KL+A NRI+ IAKA + G Sbjct: 142 LTQREYDVLRHAAAGRTNPEIADQLGLTRHTVTGYLRNAMRKLNARNRIELIAKAAQSGL 201 Query: 234 I 234 + Sbjct: 202 L 202 >gi|291006472|ref|ZP_06564445.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 210 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 42/61 (68%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ A G T+ EIA++LGL+ HTV YL +A KL+A NRI+ IAKA + G Sbjct: 150 LTQREYDVLRHAAAGRTNPEIADQLGLTRHTVTGYLRNAMRKLNARNRIELIAKAAQSGL 209 Query: 234 I 234 + Sbjct: 210 L 210 >gi|146454419|gb|ABQ41883.1| LuxR [Acidovorax citrulli] Length = 242 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 16/131 (12%) Query: 116 AGIAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 AG+A + L H+ G IF + + L L N+ + A Y ++T F L+ R + Sbjct: 113 AGLADGLGLPIHEPGGRIFLATVASHQQLTLGNDACVRA----YALVTAFHALYTMRFAT 168 Query: 171 -------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT RE CL G +S EI + +S HTVN +L +A K D +R+ Sbjct: 169 EQTQIPTAVKLTSREAECLTWVAYGKSSREIGRIMRISEHTVNFHLKNAMAKFDTASRVT 228 Query: 224 AIAKAIRFGYI 234 A +A G I Sbjct: 229 AAVRAANLGLI 239 >gi|307315521|ref|ZP_07595072.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306898775|gb|EFN29433.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 243 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 37/57 (64%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R L+ RET CLQL G S++IA LG+S + V YL SA VKL+A QA+AKA Sbjct: 179 RTLSRRETQCLQLLATGRISKQIAADLGISENAVKLYLRSARVKLNAATSYQAVAKA 235 >gi|218672647|ref|ZP_03522316.1| transcriptional regulator, LuxR family protein [Rhizobium etli GR56] Length = 265 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 43/67 (64%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K RS +LTERE CL+ + +GY+++EI+ +G SV TV +L +A KL A NR QA Sbjct: 190 KARSVGTIHLTERERECLRHSAEGYSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQA 249 Query: 225 IAKAIRF 231 + +A + Sbjct: 250 VVRATHY 256 >gi|307322370|ref|ZP_07601730.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306891988|gb|EFN22814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 243 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/57 (52%), Positives = 37/57 (64%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R L+ RET CLQL G S++IA LG+S + V YL SA VKL+A QA+AKA Sbjct: 179 RTLSRRETQCLQLLATGRISKQIAADLGISENAVKLYLRSARVKLNAATSYQAVAKA 235 >gi|296137313|ref|YP_003644555.1| two component transcriptional regulator, LuxR family [Thiomonas intermedia K12] gi|294341618|emb|CAZ90035.1| putative two-component system response regulator; CheY domain [Thiomonas sp. 3As] gi|295797435|gb|ADG32225.1| two component transcriptional regulator, LuxR family [Thiomonas intermedia K12] Length = 223 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 8/88 (9%) Query: 155 QVITDFLELFKKRSSAARNL--------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 +++ F L + S+ + NL TERE+ LQL G GYT EIA +LGLS HTV Sbjct: 135 RMVQHFTHLHRTMSAPSSNLPQEEHIALTERESEVLQLVGKGYTLPEIAVQLGLSRHTVA 194 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y+ KL+ +R +A +A+R G + Sbjct: 195 DYVKQIYRKLNISSRAEAALEAVRRGLV 222 >gi|328542023|ref|YP_004302132.1| transcriptional regulator, LuxR family [polymorphum gilvum SL003B-26A1] gi|326411773|gb|ADZ68836.1| Transcriptional regulator, LuxR family [Polymorphum gilvum SL003B-26A1] Length = 239 Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 30/65 (46%), Positives = 38/65 (58%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +A LT RE CL+ G TS EI++ LG+S HT + YL A KL A NR A+A+A Sbjct: 174 SAGTLTPRELECLKWVAAGKTSWEISQVLGISRHTADWYLAEAVRKLGAANRTHAVAEAF 233 Query: 230 RFGYI 234 R I Sbjct: 234 RRAMI 238 >gi|209886745|ref|YP_002290602.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans OM5] gi|209874941|gb|ACI94737.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans OM5] Length = 195 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/76 (42%), Positives = 45/76 (59%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 I +L L + R + + L+ RE CL AG+G T EI+ LG+S TV ++ SA K Sbjct: 116 AIGHWLYLRRPRPTCNKTLSPRELDCLLWAGEGKTDWEISVILGISRSTVTKHITSAREK 175 Query: 216 LDAVNRIQAIAKAIRF 231 L+AVN+ AIA A+R Sbjct: 176 LNAVNKPHAIAIAMRL 191 >gi|149922133|ref|ZP_01910573.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] gi|149817070|gb|EDM76552.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] Length = 247 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 166 KRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K +SA N LT RE L+L DG ++ I E+LG+S HTV ++ + KLDA +R Q Sbjct: 174 KPASAPENNLLTPREREVLELLADGLSNRNIGERLGISAHTVKFHVDALLDKLDARSRTQ 233 Query: 224 AIAKAIRFGYI 234 A+ +AIR G + Sbjct: 234 AVVQAIRRGLL 244 >gi|187927560|ref|YP_001898047.1| LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187724450|gb|ACD25615.1| transcriptional regulator, LuxR family [Ralstonia pickettii 12J] Length = 253 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 32/63 (50%), Positives = 39/63 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE CLQ A G TS EIA L +S TV ++G+AT KL A NR QA+A+AI Sbjct: 190 SLTSREKECLQWAAAGKTSWEIARILSVSERTVIFHIGNATKKLGATNRRQAVARAISLR 249 Query: 233 YIC 235 I Sbjct: 250 LIA 252 >gi|83593514|ref|YP_427266.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576428|gb|ABC22979.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 239 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/56 (53%), Positives = 39/56 (69%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE CL L G+G T++EIA ++ SV TV +L +AT KL A NR QAIA+A Sbjct: 178 HLTRRERECLALCGEGLTAKEIAYRIDRSVPTVVFHLSAATRKLGARNRFQAIARA 233 >gi|163760319|ref|ZP_02167402.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162282718|gb|EDQ33006.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 208 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + +G TS EIA LGLS HTVN+Y+ + KL VNR Q +A A+R G Sbjct: 147 LSEREIQIVSWTSEGKTSSEIAIILGLSEHTVNSYIAAILRKLQVVNRAQMVASALRNGL 206 Query: 234 I 234 I Sbjct: 207 I 207 >gi|149187186|ref|ZP_01865484.1| LuxR, transcriptional regulator [Vibrio shilonii AK1] gi|148838722|gb|EDL55661.1| LuxR, transcriptional regulator [Vibrio shilonii AK1] Length = 259 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 25/178 (14%) Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 Y D + H + +LP+ W+S+ + + + + + GL GI P+R G Sbjct: 78 YFDQVVLHCRNSMLPLQWRSLLANDIPDDKNVIKLASDFGL--GDGITIPLRANHGCLGL 135 Query: 132 VIFTS---------EFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTE 176 + F++ E +L+ V ++ D++ K+ +LT Sbjct: 136 ISFSNRKGTRKIDHESTILSTYV--------GSLVADYINDIRNHVCEKQFGQVKSSLTL 187 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE CL +G +S E+A+ +G S TVN ++ +A+ KL+A +R QA++KA+ G I Sbjct: 188 REQICLAWVAEGKSSWEVAQIIGCSERTVNFHIQNASEKLNAFSRTQAVSKALLTGSI 245 >gi|109896689|ref|YP_659944.1| LuxR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109698970|gb|ABG38890.1| transcriptional regulator, LuxR family [Pseudoalteromonas atlantica T6c] Length = 248 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 70/156 (44%), Gaps = 7/156 (4%) Query: 86 PIIWQSIQEETVIESS-GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANE 144 PI W + E S+ G L + G++ P+R + AN Sbjct: 89 PIRWDKLVEYQDFSSTKGLLVFEKAAAYGLYNGLSIPIRSTSENIAVFSVAIDERSDANR 148 Query: 145 VIIEAHGACYQVITDF------LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 V+ A C+ T LE+ + R LT+RE CL A +G T+ EI++ + Sbjct: 149 VLDNAQMFCHTFATHLFERYVLLEISASDETDRRELTKRELECLFWACEGKTAWEISQII 208 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV +LG++ KL A+NR A+A AI+ G I Sbjct: 209 NVSERTVLFHLGNSNTKLGAINRQHAVALAIKKGII 244 >gi|88797814|ref|ZP_01113402.1| LuxR, transcriptional regulator [Reinekea sp. MED297] gi|88779491|gb|EAR10678.1| LuxR, transcriptional regulator [Reinekea sp. MED297] Length = 240 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 14/171 (8%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG---GLLPFAGIAFPVRLGFHKNG 130 D + + S +P+ W I E S L + E GL AG + P+ + G Sbjct: 70 DPIVQYSISNYMPVTWAQISESPSY-SRSDLKIMWEAEASGLK--AGFSLPIHGAVGEFG 126 Query: 131 YVIFTS------EFLMLANEV-IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + F S + L A + +I+ Q L + + + A+ LT+RE CL Sbjct: 127 MISFASNHNTDEQRLKYAEAIPVIQMLVPAIQDAVKRLRVSESKEPPAK-LTKREIECLT 185 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G +S EI++ LG S T +L +A KL A NR QAI+KA+ G I Sbjct: 186 WATEGKSSWEISQILGCSERTAIFHLSNAANKLGATNRYQAISKALLCGII 236 >gi|330807408|ref|YP_004351870.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375516|gb|AEA66866.1| Putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 253 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 45/72 (62%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F L K+ + LT+RE CL+LA +G T+ +IA +L S+ T+ +L SA KL A Sbjct: 177 FPLLGKEARACPVRLTKRERECLRLAAEGLTAADIARQLNRSLATITLHLTSAMHKLGAR 236 Query: 220 NRIQAIAKAIRF 231 NR+QA+ +A+ + Sbjct: 237 NRVQAVVRAVHY 248 >gi|88859162|ref|ZP_01133803.1| LuxR, transcriptional regulator [Pseudoalteromonas tunicata D2] gi|88819388|gb|EAR29202.1| LuxR, transcriptional regulator [Pseudoalteromonas tunicata D2] Length = 233 Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 14/132 (10%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 S+ + ++PF G + G +I +E N+++ E H ++ + Sbjct: 111 FSIFCDTLIIPFKGTLYDF-------GCLILRTE----NNKLLKEEHFKSIVIVIYMYDA 159 Query: 164 FK---KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 FK K+S+ N T+RE CL+ A +G TS EI++ L ++ TVN ++ + K ++ N Sbjct: 160 FKRCKKKSNKTVNFTKREIECLKWATEGKTSWEISKILTITDRTVNYHIANCIRKTNSSN 219 Query: 221 RIQAIAKAIRFG 232 R QAIAK G Sbjct: 220 RQQAIAKFYAMG 231 >gi|148558318|ref|YP_001257186.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840] gi|148369603|gb|ABQ62475.1| transcriptional regulator, LuxR family [Brucella ovis ATCC 25840] Length = 268 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 41/70 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A Sbjct: 190 KDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA 249 Query: 225 IAKAIRFGYI 234 +A A+ G I Sbjct: 250 VATALSLGII 259 >gi|312959686|ref|ZP_07774203.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas fluorescens WH6] gi|311286403|gb|EFQ64967.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas fluorescens WH6] Length = 254 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 11/124 (8%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC--YQVITDFLE-----LFKK--R 167 G++ P+ L + G+ T A+ V+ +A + VI+ L+ LF K R Sbjct: 128 GVSVPIHLP--RGGFASLTGLRTGKASSVLQDAQQTLSEFSVISHALQEAAYPLFSKELR 185 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + +LT+RE CL+ A +G T+ +IA +L S+ V+ +L SA KL A NR+QA+ + Sbjct: 186 TYPYIHLTKRERECLKWAAEGLTAAQIATQLSRSLAVVSLHLASAMHKLGAKNRVQAVVR 245 Query: 228 AIRF 231 A + Sbjct: 246 ATHY 249 >gi|294853143|ref|ZP_06793815.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR [Brucella sp. NVSL 07-0026] gi|294818798|gb|EFG35798.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR [Brucella sp. NVSL 07-0026] Length = 268 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 41/70 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A Sbjct: 190 KDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA 249 Query: 225 IAKAIRFGYI 234 +A A+ G I Sbjct: 250 VATALSLGII 259 >gi|82703532|ref|YP_413098.1| LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82411597|gb|ABB75706.1| transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 244 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 92/210 (43%), Gaps = 25/210 (11%) Query: 38 INSALDFPRRQQLIC--ELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE 95 +N++L P R L C E D N D + H +PIIW+ + Sbjct: 41 VNTSLTRPYRFILSCYPEEWRKHYDKEGYANF------DPTVSHCARTSIPIIWK----K 90 Query: 96 TVIESSGQLSVRLEG---GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA 152 + + + VR E GL+ +G +F V G + + + + I A A Sbjct: 91 EIFKGRRETRVRNEAKDCGLV--SGASFSVHGGRGEAAMLSLATSRESREAQNDILATMA 148 Query: 153 CYQVITDFLELFKKRSSAAR--------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 Q++T +L +R ++ NLTERE CL A +G T EIA + +S T Sbjct: 149 KAQLLTCYLHEAVQRIVLSKGPLPVKKANLTEREQECLLWAAEGKTGWEIANIVKISERT 208 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V +L +A KL VNR QAI++A+ G I Sbjct: 209 VTFHLQNAIQKLGVVNRQQAISRALSMGLI 238 >gi|170752129|ref|YP_001758389.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658651|gb|ACB27706.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 242 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 14/156 (8%) Query: 86 PIIWQSIQEET-----VIESSGQLSVRLEGGLLPFAGIAFP-VRLGFHKNGYVIFTSEFL 139 P W ++ +T V+ +G+ +R AGI P V L G + Sbjct: 95 PFDWNAVLPDTPTAGRVMNEAGEFGIR--------AGITVPFVTLDGEPGGISVSGERIE 146 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + E + A Y V L + + A L+ RE LQ A +G T EI +G Sbjct: 147 IDPAERVAVNLVATYAVGQLLLMNSRPAAPAPARLSPREREALQWAAEGKTDVEIGMVMG 206 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++ V+ +L SA KLD VNR +A+A+R G I Sbjct: 207 ITAAGVDYHLRSARAKLDTVNRAHTVAQALRSGLIT 242 >gi|134099595|ref|YP_001105256.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291009580|ref|ZP_06567553.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912218|emb|CAM02331.1| putative transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 285 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 40/61 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RET L L G T++ +A +LGL +TV +YL SA KLDA NR+QA+ +A + G Sbjct: 224 LSPRETEVLALVATGCTNDAVARRLGLLPNTVKSYLKSAMKKLDATNRVQAVNRARQAGL 283 Query: 234 I 234 I Sbjct: 284 I 284 >gi|256014910|ref|YP_003104919.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915] gi|255997570|gb|ACU49257.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915] Length = 259 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 41/70 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A Sbjct: 181 KDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA 240 Query: 225 IAKAIRFGYI 234 +A A+ G I Sbjct: 241 VATALSLGII 250 >gi|225628596|ref|ZP_03786630.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo] gi|225616442|gb|EEH13490.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo] Length = 268 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 41/70 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A Sbjct: 190 KDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA 249 Query: 225 IAKAIRFGYI 234 +A A+ G I Sbjct: 250 VATALSLGII 259 >gi|254699430|ref|ZP_05161258.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513] gi|261749881|ref|ZP_05993590.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513] gi|261739634|gb|EEY27560.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513] Length = 259 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 41/70 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A Sbjct: 181 KDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA 240 Query: 225 IAKAIRFGYI 234 +A A+ G I Sbjct: 241 VATALSLGII 250 >gi|254720638|ref|ZP_05182449.1| regulatory protein LuxR [Brucella sp. 83/13] gi|265985682|ref|ZP_06098417.1| regulatory protein LuxR [Brucella sp. 83/13] gi|264664274|gb|EEZ34535.1| regulatory protein LuxR [Brucella sp. 83/13] Length = 259 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 41/70 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A Sbjct: 181 KDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA 240 Query: 225 IAKAIRFGYI 234 +A A+ G I Sbjct: 241 VATALSLGII 250 >gi|306841076|ref|ZP_07473798.1| regulatory protein LuxR [Brucella sp. BO2] gi|306846307|ref|ZP_07478868.1| regulatory protein LuxR [Brucella sp. BO1] gi|306273302|gb|EFM55171.1| regulatory protein LuxR [Brucella sp. BO1] gi|306288886|gb|EFM60191.1| regulatory protein LuxR [Brucella sp. BO2] Length = 258 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 41/70 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A Sbjct: 180 KDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA 239 Query: 225 IAKAIRFGYI 234 +A A+ G I Sbjct: 240 VATALSLGII 249 >gi|23499883|ref|NP_699323.1| LuxR family transcriptional regulator [Brucella suis 1330] gi|62317073|ref|YP_222926.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|83269066|ref|YP_418357.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus 2308] gi|161620206|ref|YP_001594092.1| regulatory protein LuxR [Brucella canis ATCC 23365] gi|163844315|ref|YP_001621970.1| hypothetical protein BSUIS_B0125 [Brucella suis ATCC 23445] gi|189022339|ref|YP_001932080.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|225685981|ref|YP_002733953.1| regulatory protein LuxR [Brucella melitensis ATCC 23457] gi|254691441|ref|ZP_05154695.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870] gi|254695262|ref|ZP_05157090.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya] gi|254698360|ref|ZP_05160188.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59] gi|254711984|ref|ZP_05173795.1| regulatory protein LuxR [Brucella ceti M644/93/1] gi|254715054|ref|ZP_05176865.1| regulatory protein LuxR [Brucella ceti M13/05/1] gi|254731805|ref|ZP_05190383.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292] gi|256043041|ref|ZP_05445986.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1] gi|256059638|ref|ZP_05449835.1| regulatory protein LuxR [Brucella neotomae 5K33] gi|256111973|ref|ZP_05452924.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether] gi|256256626|ref|ZP_05462162.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68] gi|256262895|ref|ZP_05465427.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260544312|ref|ZP_05820133.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260564274|ref|ZP_05834759.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260568545|ref|ZP_05839014.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260757058|ref|ZP_05869406.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870] gi|260759571|ref|ZP_05871919.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292] gi|260762815|ref|ZP_05875147.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59] gi|260882868|ref|ZP_05894482.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68] gi|261215627|ref|ZP_05929908.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya] gi|261216761|ref|ZP_05931042.1| regulatory protein LuxR [Brucella ceti M13/05/1] gi|261319628|ref|ZP_05958825.1| regulatory protein LuxR [Brucella ceti M644/93/1] gi|261323608|ref|ZP_05962805.1| regulatory protein LuxR [Brucella neotomae 5K33] gi|265989480|ref|ZP_06102037.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1] gi|265993421|ref|ZP_06105978.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether] gi|297249982|ref|ZP_06933683.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196] gi|75505158|sp|Q579W9|VJBR_BRUAB RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|81751697|sp|Q8FXF9|VJBR_BRUSU RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|123754460|sp|Q2YJ50|VJBR_BRUA2 RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|190360175|sp|Q8YAY5|VJBR_BRUME RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|23463458|gb|AAN33328.1| transcriptional regulator, LuxR family [Brucella suis 1330] gi|62197266|gb|AAX75565.1| transcriptional regulator, LuxR family [Brucella abortus bv. 1 str. 9-941] gi|82939340|emb|CAJ12284.1| Bacterial regulatory protein, LuxR family [Brucella melitensis biovar Abortus 2308] gi|161337017|gb|ABX63321.1| regulatory protein LuxR [Brucella canis ATCC 23365] gi|163675038|gb|ABY39148.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189020913|gb|ACD73634.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|225642086|gb|ACO01999.1| regulatory protein LuxR [Brucella melitensis ATCC 23457] gi|260097583|gb|EEW81457.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260151917|gb|EEW87010.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260155210|gb|EEW90291.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260669889|gb|EEX56829.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292] gi|260673236|gb|EEX60057.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59] gi|260677166|gb|EEX63987.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870] gi|260872396|gb|EEX79465.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68] gi|260917234|gb|EEX84095.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya] gi|260921850|gb|EEX88418.1| regulatory protein LuxR [Brucella ceti M13/05/1] gi|261292318|gb|EEX95814.1| regulatory protein LuxR [Brucella ceti M644/93/1] gi|261299588|gb|EEY03085.1| regulatory protein LuxR [Brucella neotomae 5K33] gi|262764291|gb|EEZ10323.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether] gi|263000149|gb|EEZ12839.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1] gi|263092732|gb|EEZ16941.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|297173851|gb|EFH33215.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196] gi|326410305|gb|ADZ67369.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28] gi|326553598|gb|ADZ88237.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M5-90] Length = 259 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 41/70 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A Sbjct: 181 KDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA 240 Query: 225 IAKAIRFGYI 234 +A A+ G I Sbjct: 241 VATALSLGII 250 >gi|206558215|sp|A5VTN1|VJBR_BRUO2 RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR Length = 259 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 41/70 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A Sbjct: 181 KDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA 240 Query: 225 IAKAIRFGYI 234 +A A+ G I Sbjct: 241 VATALSLGII 250 >gi|254706324|ref|ZP_05168152.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10] gi|254711385|ref|ZP_05173196.1| regulatory protein LuxR [Brucella pinnipedialis B2/94] gi|256029985|ref|ZP_05443599.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1] gi|256158149|ref|ZP_05456065.1| regulatory protein LuxR [Brucella ceti M490/95/1] gi|256252900|ref|ZP_05458436.1| regulatory protein LuxR [Brucella ceti B1/94] gi|261219988|ref|ZP_05934269.1| regulatory protein LuxR [Brucella ceti B1/94] gi|261313770|ref|ZP_05952967.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10] gi|261318991|ref|ZP_05958188.1| regulatory protein LuxR [Brucella pinnipedialis B2/94] gi|265987006|ref|ZP_06099563.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1] gi|265996667|ref|ZP_06109224.1| regulatory protein LuxR [Brucella ceti M490/95/1] gi|260918572|gb|EEX85225.1| regulatory protein LuxR [Brucella ceti B1/94] gi|261298214|gb|EEY01711.1| regulatory protein LuxR [Brucella pinnipedialis B2/94] gi|261302796|gb|EEY06293.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10] gi|262550964|gb|EEZ07125.1| regulatory protein LuxR [Brucella ceti M490/95/1] gi|264659203|gb|EEZ29464.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1] Length = 259 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 41/70 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A Sbjct: 181 KDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA 240 Query: 225 IAKAIRFGYI 234 +A A+ G I Sbjct: 241 VATALSLGII 250 >gi|254471678|ref|ZP_05085079.1| transcriptional regulator, LuxR family, putative [Pseudovibrio sp. JE062] gi|211958880|gb|EEA94079.1| transcriptional regulator, LuxR family, putative [Pseudovibrio sp. JE062] Length = 233 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 99/235 (42%), Gaps = 24/235 (10%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRR--QQLICELHNYDLDSGDIPN 66 K S + P L ++++ ++ R A + + + L P R L+ D +G + Sbjct: 12 KAISEARAAKPVLDIVESYLR-RLGASHILITGLPMPNRTIDSLVHRFRWPDERNGGVER 70 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEET-------VIESSGQLSVRLEGGLLPFAGIA 119 + + GD L SG P++W +T I ++ V L PF + Sbjct: 71 TTL-SAGDSALMLGLSGNRPVVWSVSGTDTGNSELFAAIGEGARVMVIPVDALHPFQAMV 129 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 G+ I + + + E++ C EL +L+ RE Sbjct: 130 VGA-------GHQIAAEPYDLASLEIV------CSAAFRRLFELGVISDQRPGDLSARER 176 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G T+ EIAE L +S TV+A+L +A+ KL+A N+ + +A+R+G I Sbjct: 177 RVLELTALGKTAHEIAELLEISQRTVHAHLQNASAKLNASNKTHTVVEALRYGQI 231 >gi|146340687|ref|YP_001205735.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146193493|emb|CAL77509.1| putative transcriptional regulatory protein, LuxR family [Bradyrhizobium sp. ORS278] Length = 133 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 32/68 (47%), Positives = 40/68 (58%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S A LT RE L L +G +++EIA LG+SVHT ++GS KLDA R A+A Sbjct: 64 RDSDAFQLTARERDVLALMAEGCSNKEIARSLGISVHTAKFHVGSLLDKLDATGRTDAVA 123 Query: 227 KAIRFGYI 234 A R G I Sbjct: 124 HAARRGII 131 >gi|322835285|ref|YP_004215311.1| LuxR family transcriptional regulator [Rahnella sp. Y9602] gi|321170486|gb|ADW76184.1| transcriptional regulator, LuxR family [Rahnella sp. Y9602] Length = 251 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 39/58 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE CL A +G T++EIA KL S+ TV +L +A KL A NR+QA+ +A+ + Sbjct: 189 LSKRERECLTWAAEGLTAKEIARKLNRSIATVTLHLNTAARKLGASNRVQAVVRAMHY 246 >gi|328544601|ref|YP_004304710.1| transcriptional regulatory protein [polymorphum gilvum SL003B-26A1] gi|326414343|gb|ADZ71406.1| Transcriptional regulatory protein [Polymorphum gilvum SL003B-26A1] Length = 233 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 6/105 (5%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + T ++ + A E++ +A + + D L +R A L+ RE L+L G Sbjct: 133 GPKLKTGKYELAALELLTDA---AFTRLQDIGALSSQRPGA---LSSRERKVLELTAFGK 186 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ EIAE L +S TV+A+L +A+VKL+A N+ + +A+R+G I Sbjct: 187 TASEIAELLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 231 >gi|163758741|ref|ZP_02165828.1| putative AHL-dependent transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284031|gb|EDQ34315.1| putative AHL-dependent transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 239 Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 33/60 (55%), Positives = 39/60 (65%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +L+ RE CL LA G ++IA LGLS HTV YL SA KL +VN QAIA+AIR Sbjct: 174 ALHLSPREIECLTLAARGKDHKDIALILGLSGHTVQGYLKSARHKLGSVNIPQAIAEAIR 233 >gi|209809715|ref|YP_002265254.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] gi|21311436|gb|AAM46717.1|AF452135_2 LuxR1 [Aliivibrio salmonicida] gi|208011278|emb|CAQ81719.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] Length = 248 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 43/167 (25%), Positives = 78/167 (46%), Gaps = 13/167 (7%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 D+ F FN PI+W ++T+ + + ++ L ++G +FP+ G + F Sbjct: 83 DYCF-FNHS--PILWDIFGKKTLKTNKPNV-IQEAKSLGLYSGFSFPIHSVNGSFGMISF 138 Query: 135 TSEFLMLANEVIIEAHGACYQV-------ITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + + AC + + + + K + + +LT+RE CL A + Sbjct: 139 AHSNKKQSTDCLFST--ACMYIPLIIPALLDSYYRINKNNTESTHDLTKREKECLAWACE 196 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S EI+ LG + TV +L ++ KL NR Q+++KAI G I Sbjct: 197 GKSSWEISIILGCTERTVAFHLTNSQTKLGTTNRCQSVSKAILTGAI 243 >gi|17989461|ref|NP_542094.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1 str. 16M] gi|17985340|gb|AAL54358.1| transcriptional activator, luxr family [Brucella melitensis bv. 1 str. 16M] Length = 235 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 41/70 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A Sbjct: 157 KDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA 216 Query: 225 IAKAIRFGYI 234 +A A+ G I Sbjct: 217 VATALSLGII 226 >gi|306837362|ref|ZP_07470241.1| regulatory protein LuxR [Brucella sp. NF 2653] gi|306407554|gb|EFM63754.1| regulatory protein LuxR [Brucella sp. NF 2653] Length = 235 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 41/70 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A Sbjct: 157 KDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA 216 Query: 225 IAKAIRFGYI 234 +A A+ G I Sbjct: 217 VATALSLGII 226 >gi|262196287|ref|YP_003267496.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262079634|gb|ACY15603.1| transcriptional regulator, LuxR family [Haliangium ochraceum DSM 14365] Length = 254 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 37/205 (18%) Query: 56 NYDLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL 108 NY L PN + Y D L H PI W ++Q + +S + +R Sbjct: 59 NYHLLLNAYPNAWADRYYEKHYWYSDPVLAHCGRSPTPIDWTTVQNQPAQPASAEQVMRE 118 Query: 109 EGGLLPFAGIAFPVR-----LGF--------------HKNGYVIFTSEFLMLANEVIIEA 149 +G+ VR LG + + I ++F++ +EA Sbjct: 119 AHEHDLCSGVTVTVRDVSGRLGILSLATRDVYSAELRDRIRHAIPIAQFVLSHLVEKLEA 178 Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + V + L+ +K L+ERE CL+ G TS EI LG++ T +L Sbjct: 179 H---FHVRLEDLQRYK--------LSERERECLRWVAAGKTSWEIGHILGIAERTAIFHL 227 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 +A KL AVNR A+A+A++ G I Sbjct: 228 NNAMKKLGAVNRSHAVARALQHGVI 252 >gi|121582936|ref|YP_973378.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] gi|120596198|gb|ABM39636.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] Length = 195 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 6/159 (3%) Query: 75 DFLFHFNSGLLPII-WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 DF ++ + P++ W+ I + + G + + GL IAFP+ G Y + Sbjct: 40 DFGVAWDDFMAPLVGWEDIADAIPEATQGWRMLCVGHGLQSVLRIAFPMTGGRAFECY-L 98 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F+S N+ A + + L + A L+ RE CL+LA G T+ E Sbjct: 99 FSSLKWHDQND----AAQLAWSAFIKWPALKQALIQAHSPLSPREIECLKLAFKGLTARE 154 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +EK+G + TV ++ +A+ KL A N++ AI +A FG Sbjct: 155 SSEKMGCTERTVTFHIANASTKLRADNKLAAIQRACWFG 193 >gi|190572437|ref|YP_001970282.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010359|emb|CAQ43967.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 200 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 41/66 (62%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT+RE L+LAG+G T+ EIAE+LGLS TV YL KL NRI+A A Sbjct: 135 SQADPLTDRERRVLRLAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANRIEAYRMA 194 Query: 229 IRFGYI 234 + G++ Sbjct: 195 RQKGWL 200 >gi|307331390|ref|ZP_07610509.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306882949|gb|EFN14016.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 201 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/111 (37%), Positives = 56/111 (50%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L H +G+++ S L++ + A G +VI L L + LT RE L+ Sbjct: 94 LAAHVSGFLLKDSSPEKLSDAIRAVAQG--ERVIDPQLAL-AALDDGPQPLTPRELEVLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G S +IA KL LSV TV YL SA KLDA NR+ AI A G++ Sbjct: 151 FAAKGEESAQIAAKLFLSVGTVRNYLTSAVTKLDARNRVDAIRIAREAGWL 201 >gi|27382386|ref|NP_773915.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27355557|dbj|BAC52540.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 123 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L +G +++ IA +LG+SVHTV ++GS KLDA R A+A A R G Sbjct: 61 LTQRELDVLALMAEGASNKMIARQLGISVHTVKFHVGSLLDKLDATGRTDAVAHAARRGV 120 Query: 234 I 234 I Sbjct: 121 I 121 >gi|114704741|ref|ZP_01437649.1| putative transcription regulator protein [Fulvimarina pelagi HTCC2506] gi|114539526|gb|EAU42646.1| putative transcription regulator protein [Fulvimarina pelagi HTCC2506] Length = 226 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE CL+LA G TS EI L LS +T++ YL +A KLDA NR +A A + GY Sbjct: 165 LTPRERDCLRLAMLGKTSSEIGIVLSLSEYTISQYLTAAQRKLDASNRTHTVAMAAQLGY 224 Query: 234 I 234 + Sbjct: 225 L 225 >gi|218679157|ref|ZP_03527054.1| LuxR family transcriptional regulator [Rhizobium etli CIAT 894] Length = 265 Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 163 LFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LF K +S LTERE CL+ + +GY+++EI+ +G SV TV +L +A KL A N Sbjct: 179 LFDKTAKSVGTVRLTERERECLRHSAEGYSAKEISRIIGRSVPTVVMHLNAAAKKLGARN 238 Query: 221 RIQAIAKAIRF 231 R QA+ +A + Sbjct: 239 RTQAVVRATHY 249 >gi|153011539|ref|YP_001372753.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188] gi|151563427|gb|ABS16924.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188] Length = 260 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 41/70 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K ++ A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A Sbjct: 182 KDVATVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSA 241 Query: 225 IAKAIRFGYI 234 +A A+ G I Sbjct: 242 VATALSLGII 251 >gi|182677912|ref|YP_001832058.1| LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633795|gb|ACB94569.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 268 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 17/130 (13%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL---FKKRSSAARN 173 G+ PVR NG + F M ++ E Y++I D + + ++R+ + Sbjct: 143 GLTIPVR--GPTNG---LWALFCMTTDDTQAEWQARHYELIRDMVHVAHFIQQRAFEMHH 197 Query: 174 ---------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +T+RE L + +G T E+I+ + +S TV A+L SA KL A+NRI A Sbjct: 198 QDEGIDINTITKREIEALSWSAEGKTLEDISVLMRISQETVKAHLDSARYKLGALNRIHA 257 Query: 225 IAKAIRFGYI 234 +AKAIR G I Sbjct: 258 VAKAIRAGLI 267 >gi|190894575|ref|YP_001984868.1| putative LuxR family transcriptional regulator [Rhizobium etli CIAT 652] gi|190700236|gb|ACE94318.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|327189865|gb|EGE57000.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 265 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 61/123 (49%), Gaps = 10/123 (8%) Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 G GI F F ++ + + ++F +LA+ H A Y + K RS Sbjct: 137 RGDYATVTGIRFGRNNDFERHA-LRYIADFNLLAHVF----HEAAYSLFDR-----KARS 186 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE CL+ + +GY+++EI+ + SV TV +L +A KL A NR QA+ +A Sbjct: 187 VGTVRLTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKLGARNRTQAVVRA 246 Query: 229 IRF 231 + Sbjct: 247 THY 249 >gi|120612451|ref|YP_972129.1| LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590915|gb|ABM34355.1| transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] gi|227167429|gb|ACP19743.1| LuxR-like protein [Acidovorax citrulli] Length = 242 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 16/131 (12%) Query: 116 AGIAFPVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 AG+A + L H+ G IF + + L L N+ + Y ++T F L+ R + Sbjct: 113 AGLADGLGLPIHEPGGRIFLATVASHQQLTLGNDACVRT----YALVTAFHALYTMRFAT 168 Query: 171 -------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT RE CL G +S EI + +S HTVN +L +A K D +R+ Sbjct: 169 EQTQIPTAVKLTSREAECLTWVAYGKSSWEIGRIMRISEHTVNFHLKNAMAKFDTASRVT 228 Query: 224 AIAKAIRFGYI 234 A +A G I Sbjct: 229 AAVRAANLGLI 239 >gi|170745593|ref|YP_001776815.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170752150|ref|YP_001783296.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170659247|gb|ACB28299.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] gi|170659277|gb|ACB28328.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 248 Score = 55.8 bits (133), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 29/174 (16%) Query: 74 DDFLFHFNSGLLPIIWQSIQEE-------TVIESSGQLSVRLEGGLLPF-------AGIA 119 D + H P +WQ + V+E + S+ EG +PF AG++ Sbjct: 82 DPVIRHIRGTTDPFLWQEAVDAQVTPEGMVVMEEARAFSLN-EGFCVPFHQIDGTEAGVS 140 Query: 120 F---PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 F VRL + + + + M + I G L + + LT Sbjct: 141 FGGEQVRLSQDERAALHLVAIYAMSTAKAIARRRG-----------LSEDDGTPPSPLTG 189 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 RE CL+ + G ++ EI L +S TV +LGSA KL++V R QA+A+A+R Sbjct: 190 REAECLKWSSTGKSAWEIGVILSISTRTVEHHLGSAVRKLNSVTRTQAVAEALR 243 >gi|300788854|ref|YP_003769145.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299798368|gb|ADJ48743.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 210 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 36/71 (50%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 166 KRSSA-ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +RS A AR+ LT RE L+LA G T+ EIAE GL+ +TV YL SA KL A NR++ Sbjct: 140 QRSDALARSGLTRREYEVLRLAAQGQTNPEIAESTGLARNTVKTYLQSALHKLGARNRVE 199 Query: 224 AIAKAIRFGYI 234 AI KA G + Sbjct: 200 AIGKASEAGLL 210 >gi|71279244|ref|YP_268811.1| LuxR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71144984|gb|AAZ25457.1| transcriptional regulator, LuxR family [Colwellia psychrerythraea 34H] Length = 269 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 43/86 (50%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 AH Y I + + LT RE CL + G T+ EIA+ LGL T+ Y Sbjct: 172 AHQLVYHCIDNLQWREDGMKYSIVKLTAREKDCLYWSAQGKTANEIADILGLKTETIRKY 231 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + +L+A ++ QA+ KAI FG + Sbjct: 232 IKNVMKRLNARSKTQAVVKAIEFGLL 257 >gi|271501434|ref|YP_003334459.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586] gi|270344989|gb|ACZ77754.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586] Length = 250 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 38/59 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE CL + +G T++EIA KL SV TV +L +A KL A NR+QA+ +A+ + Sbjct: 187 KLSNRERECLAWSAEGLTAKEIARKLHRSVATVTLHLNTAAKKLGATNRVQAVVRALHY 245 >gi|254524756|ref|ZP_05136811.1| two-component system response regulator, LuxR family [Stenotrophomonas sp. SKA14] gi|219722347|gb|EED40872.1| two-component system response regulator, LuxR family [Stenotrophomonas sp. SKA14] Length = 200 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 41/66 (62%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT+RE L+LAG+G T+ EIAE+LGLS TV YL KL NRI+A A Sbjct: 135 SQADPLTDRERRVLRLAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANRIEAYRLA 194 Query: 229 IRFGYI 234 + G++ Sbjct: 195 RQKGWL 200 >gi|329928019|ref|ZP_08282023.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5] gi|328938123|gb|EGG34520.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5] Length = 191 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 56/107 (52%), Gaps = 4/107 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGD 187 GY++ LA E I G +V + + F S A N LTERE L+LA D Sbjct: 88 QGYLLKDEPSERLA-EAIRRVMGGRREVSPELV--FGTLSGAGANPLTEREREVLRLAAD 144 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S +IA KL LS TV Y+ KL+A NRI+AI+ A G+I Sbjct: 145 GNSSNDIAAKLHLSYGTVRNYMSEILSKLNAKNRIEAISLAEEKGWI 191 >gi|261404049|ref|YP_003240290.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280512|gb|ACX62483.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 203 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 43/107 (40%), Positives = 56/107 (52%), Gaps = 4/107 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGD 187 GY++ LA E I G +V + + F S A N LTERE L+LA D Sbjct: 100 QGYLLKDEPSERLA-EAIRRVMGGRREVSPELV--FGTLSGAGANPLTEREREVLRLAAD 156 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S +IA KL LS TV Y+ KL+A NRI+AI+ A G+I Sbjct: 157 GNSSNDIAAKLHLSYGTVRNYMSEILSKLNAKNRIEAISLAEEKGWI 203 >gi|194364036|ref|YP_002026646.1| two component LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194346840|gb|ACF49963.1| two component transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 200 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/66 (48%), Positives = 41/66 (62%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT+RE L+LAG+G T+ EIAE+LGLS TV YL KL NRI+A A Sbjct: 135 SQADPLTDRERRVLRLAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANRIEAYRLA 194 Query: 229 IRFGYI 234 + G++ Sbjct: 195 RQKGWL 200 >gi|261497168|gb|ACX83628.1| putative two-component response regulator [uncultured soil bacterium V167] Length = 191 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 32/67 (47%), Positives = 43/67 (64%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SSA LT+RE L+LA +G S EIA++L L+V T+ YL SA +KL A NR+ AI Sbjct: 124 SSAENPLTQREIDTLRLAAEGAGSSEIADQLHLAVGTIRNYLTSAVLKLHARNRLDAILI 183 Query: 228 AIRFGYI 234 A G++ Sbjct: 184 AQDAGWL 190 >gi|299535065|ref|ZP_07048391.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1] gi|298729561|gb|EFI70110.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1] Length = 376 Score = 55.5 bits (132), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 39/68 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K + +LTERE+ L L +GY +++IA L LS HTV Y+ S KL A NR Q Sbjct: 306 KVEKNTVLHLTERESMILGLLAEGYDNKKIAGLLFLSEHTVRDYVSSLMTKLKAKNRTQV 365 Query: 225 IAKAIRFG 232 +A A R G Sbjct: 366 VASAFRLG 373 >gi|307130193|ref|YP_003882209.1| transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937] gi|306527722|gb|ADM97652.1| Transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937] Length = 326 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 40/59 (67%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L+ RE CL + +G T++EIA KL S+ TVN +L +A KL A NR+QA+ +A+ + Sbjct: 265 HLSPREQECLAWSAEGLTAKEIARKLHRSLATVNLHLNNAARKLGASNRVQAVVRAMHY 323 >gi|302543707|ref|ZP_07296049.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461325|gb|EFL24418.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 206 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G+V T+ LA E+I HG V D S+ LT RET L LA DG Sbjct: 104 RGFVPKTASAQQLA-EIIRAVHGGSRYVDPDLA--ADAISAGDSPLTARETELLDLAADG 160 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA + LS TV YL +A KL A NR A+ +A G++ Sbjct: 161 ASVAEIARRAALSPGTVRNYLSAAAAKLHAENRHAAVRRARERGWL 206 >gi|271966006|ref|YP_003340202.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509181|gb|ACZ87459.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 201 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE+ L+L G EIA ++GLS TV YL S+ KL+A NR+ AI A G+ Sbjct: 141 LTERESEVLRLTASGAEPPEIAARIGLSYGTVRNYLASSVTKLNARNRVDAIRIATEAGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|188584215|ref|YP_001927660.1| LuxR family transcriptional regulator [Methylobacterium populi BJ001] gi|179347713|gb|ACB83125.1| transcriptional regulator, LuxR family [Methylobacterium populi BJ001] Length = 243 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQ +G T EI E +G+S H V+ +L SA VKL V+R QA+A+ R G Sbjct: 181 GLTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRG 240 Query: 233 YIC 235 I Sbjct: 241 LIV 243 >gi|294631904|ref|ZP_06710464.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292835237|gb|EFF93586.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 203 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 55/106 (51%), Gaps = 3/106 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 NGY++ + LA+ V G Q + D +A +TERET L+LA DG Sbjct: 100 NGYLLKDAPPHELADAVRRVVAG---QRVIDPQLALDVWGTAENPMTERETEVLRLAADG 156 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA++L L+ TV YL SA KL A NR+ AI A G++ Sbjct: 157 LEAGEIAKQLRLARGTVRNYLTSAVTKLLARNRVDAIRIAREAGWL 202 >gi|220921013|ref|YP_002496314.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945619|gb|ACL56011.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 245 Score = 55.1 bits (131), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 29/60 (48%), Positives = 36/60 (60%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE C++ A G T EI+E L LS TV AYL +A KL NR+ IA+AIR G I Sbjct: 185 SAREIECMRWAAAGKTGWEISEILSLSQRTVEAYLNNAARKLGVANRVHLIAEAIRHGLI 244 >gi|218506239|ref|ZP_03504117.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli Brasil 5] Length = 215 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 41/67 (61%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K RS LTERE CL+ + +GY+++EI+ + SV TV +L +A KL A NR QA Sbjct: 138 KARSVGTVRLTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKLGARNRTQA 197 Query: 225 IAKAIRF 231 + +A + Sbjct: 198 VVRATHY 204 >gi|291295648|ref|YP_003507046.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470607|gb|ADD28026.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 200 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+LAG+G TS EIA +LGLS TV YL A KL A NR++A A G+ Sbjct: 140 LTDRERRVLRLAGEGRTSAEIAAELGLSEGTVRNYLSEAISKLGAQNRVEAARIAREKGW 199 Query: 234 I 234 + Sbjct: 200 L 200 >gi|261420477|ref|YP_003254159.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319768147|ref|YP_004133648.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261376934|gb|ACX79677.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317113013|gb|ADU95505.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 391 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 43/70 (61%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ A +L+ RE L+L DG ++ E A +L LS TV Y+ SA KL+A NR +A Sbjct: 321 KEWEGMAESLSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEA 380 Query: 225 IAKAIRFGYI 234 +AKA+R G I Sbjct: 381 VAKALRLGLI 390 >gi|254563872|ref|YP_003070967.1| N-acylhomoserine lactone LuxR family transcriptional regulator [Methylobacterium extorquens DM4] gi|254271150|emb|CAX27157.1| N-acylhomoserine lactone transcriptional regulator, LuxR family [Methylobacterium extorquens DM4] Length = 165 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQ +G T EI E +G+S H V+ +L SA VKL V+R QA+A+ R G Sbjct: 103 GLTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRG 162 Query: 233 YI 234 I Sbjct: 163 LI 164 >gi|332304832|ref|YP_004432683.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172161|gb|AEE21415.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 209 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 42/61 (68%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT++E L+LA DG ++E+IA KL LS TV YL SA+ KL+A NRI+A A + G+ Sbjct: 149 LTDKERRALRLAKDGLSTEDIASKLFLSTGTVRNYLSSASNKLNAKNRIEAARIAHQNGW 208 Query: 234 I 234 + Sbjct: 209 L 209 >gi|297528821|ref|YP_003670096.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297252073|gb|ADI25519.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 391 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 43/70 (61%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ A +L+ RE L+L DG ++ E A +L LS TV Y+ SA KL+A NR +A Sbjct: 321 KEWEGMAESLSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEA 380 Query: 225 IAKAIRFGYI 234 +AKA+R G I Sbjct: 381 VAKALRLGLI 390 >gi|218532854|ref|YP_002423670.1| LuxR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218525157|gb|ACK85742.1| transcriptional regulator, LuxR family [Methylobacterium chloromethanicum CM4] Length = 243 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQ +G T EI E +G+S H V+ +L SA VKL V+R QA+A+ R G Sbjct: 181 GLTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRG 240 Query: 233 YI 234 I Sbjct: 241 LI 242 >gi|163853910|ref|YP_001641953.1| autoinducer-binding domain-containing protein [Methylobacterium extorquens PA1] gi|163665515|gb|ABY32882.1| Autoinducer-binding domain protein [Methylobacterium extorquens PA1] Length = 243 Score = 55.1 bits (131), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQ +G T EI E +G+S H V+ +L SA VKL V+R QA+A+ R G Sbjct: 181 GLTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRG 240 Query: 233 YI 234 I Sbjct: 241 LI 242 >gi|153007543|ref|YP_001368758.1| autoinducer-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151559431|gb|ABS12929.1| Autoinducer-binding domain protein [Ochrobactrum anthropi ATCC 49188] Length = 235 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 7/114 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSSAARNLTERETS 180 L F + G + + E ML ++ I A H + Y + L++ + NLT RE Sbjct: 126 LSFLRTGPALSSGEISMLRRQMQIAANLLHLSMY----EHLDVPTMNCVSEVNLTMRERE 181 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 182 ILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 235 >gi|240141366|ref|YP_002965846.1| N-acylhomoserine lactone transcriptional regulator, LuxR family [Methylobacterium extorquens AM1] gi|240011343|gb|ACS42569.1| N-acylhomoserine lactone transcriptional regulator, LuxR family [Methylobacterium extorquens AM1] Length = 165 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQ +G T EI E +G+S H V+ +L SA VKL V+R QA+A+ R G Sbjct: 103 GLTPRERESLQWVAEGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRG 162 Query: 233 YI 234 I Sbjct: 163 LI 164 >gi|332974286|gb|EGK11218.1| hypothetical protein HMPREF9374_2036 [Desmospora sp. 8437] Length = 438 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 39/68 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A++ LT RE LQ+ GY+++ I E L +S HT Y + KL+A NR +A+A Sbjct: 370 RPPASKLLTRREQELLQMIAYGYSTKHIGEILHISEHTAAEYAQTILRKLNAKNRPEAVA 429 Query: 227 KAIRFGYI 234 K R G I Sbjct: 430 KGFRLGMI 437 >gi|116249629|ref|YP_765467.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254277|emb|CAK03896.1| putative LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 270 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 42/67 (62%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + +S LTERE CL+ + +GY+++EI+ + SV TV +L +AT KL A NR QA Sbjct: 188 RAKSVGTIRLTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAATKKLGARNRTQA 247 Query: 225 IAKAIRF 231 + +A + Sbjct: 248 VVRATHY 254 >gi|21243715|ref|NP_643297.1| AhyR/AsaR family transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21109298|gb|AAM37833.1| transcriptional regulator ahyR/asaR family [Xanthomonas axonopodis pv. citri str. 306] Length = 254 Score = 54.7 bits (130), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 36/58 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+A+ + + Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVARGMHY 249 >gi|241258818|ref|YP_002978702.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863288|gb|ACS60951.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 275 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 42/67 (62%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + +S LTERE CL+ + +GY+++EI+ + SV TV +L +AT KL A NR QA Sbjct: 193 RAKSVGTIRLTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAATKKLGARNRTQA 252 Query: 225 IAKAIRF 231 + +A + Sbjct: 253 VVRATHY 259 >gi|153010196|ref|YP_001371410.1| two component LuxR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562084|gb|ABS15581.1| two component transcriptional regulator, LuxR family [Ochrobactrum anthropi ATCC 49188] Length = 216 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 11/95 (11%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 ++A I AH A ++ +F+ +L+ RET L+ GDG+ + EIA KLG Sbjct: 130 LVARVKAISAHPAAMELEGEFI-----------HLSRRETEVLKEIGDGHKNGEIARKLG 178 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS HTV+ Y+ + KL +R +A +AIR G + Sbjct: 179 LSEHTVSDYVKAIYQKLSVSSRAEATREAIRRGLV 213 >gi|56421574|ref|YP_148892.1| hypothetical protein GK3039 [Geobacillus kaustophilus HTA426] gi|56381416|dbj|BAD77324.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 391 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/70 (44%), Positives = 43/70 (61%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ A +L+ RE L+L DG ++ E A +L LS TV Y+ SA KL+A NR +A Sbjct: 321 KEWEGRAESLSPREIEILKLLADGASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEA 380 Query: 225 IAKAIRFGYI 234 +AKA+R G I Sbjct: 381 VAKALRLGLI 390 >gi|13472561|ref|NP_104128.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14023307|dbj|BAB49914.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 265 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE CL +G T++E+A LG+S +TVN+Y+ A K A NR AIA AIR G Sbjct: 205 LSDRERECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIRSGI 264 Query: 234 I 234 I Sbjct: 265 I 265 >gi|92109564|ref|YP_571851.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91802646|gb|ABE65019.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 231 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 38/58 (65%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 NLT RE CL AG+G T+ EI+ LG+S TV ++ +A KL AV++ AIA AIR Sbjct: 169 NLTAREWDCLLWAGEGKTNWEISAILGISKSTVTKHIMAARAKLGAVSKAHAIAMAIR 226 >gi|319781696|ref|YP_004141172.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167584|gb|ADV11122.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 236 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE CL +G T++E+A LG+S +TVN+Y+ A K A NR AIA AIR G Sbjct: 176 LSDRERECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIRSGI 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|170783491|ref|YP_001741984.1| putative DNA binding response regulator [Arthrobacter sp. AK-1] gi|150034978|gb|ABR66989.1| putative DNA binding response regulator [Arthrobacter sp. AK-1] Length = 212 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL ++ +A R L+ RE L+LA DGY+ ++IA +L +S+ TV +L KLD + Sbjct: 138 ELRTRQDTAERPVLSPREIEILRLAADGYSGQKIASELHISLATVKTHLQHIYDKLDVSD 197 Query: 221 RIQAIAKAIRFGYI 234 R A+A+AIR G++ Sbjct: 198 RASAVAQAIRRGFL 211 >gi|260466634|ref|ZP_05812822.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029640|gb|EEW30928.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 236 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE CL +G T++E+A LG+S +TVN+Y+ A K A NR AIA AIR G Sbjct: 176 LSDRERECLFWVSEGKTTDEVAVILGVSSNTVNSYITHAIQKFAASNRAMAIATAIRSGI 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|148255164|ref|YP_001239749.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146407337|gb|ABQ35843.1| putative transcriptional regulatory protein, LuxR family [Bradyrhizobium sp. BTAi1] Length = 140 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G +++EIA LG+SVHT ++GS KLDA R A+A A R G Sbjct: 77 QLTARERDVLALMAEGCSNKEIARSLGISVHTAKFHVGSLLDKLDATGRTDAVAHAARRG 136 Query: 233 YI 234 I Sbjct: 137 II 138 >gi|330811856|ref|YP_004356318.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379964|gb|AEA71314.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 237 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 63/247 (25%), Positives = 97/247 (39%), Gaps = 40/247 (16%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +K S ++L L+ N + F + L P + L+NY + Sbjct: 10 RKLSCEKDLQTAYRLVLNFFNNQGFEYCAFAAYLGSPDKHTSKVNLNNYPYGWDRLYEQN 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQL---------------SVRLEGG-- 111 D + H N LPI+W +ETV + +L SV E G Sbjct: 70 GYASNDPLVAHCNQSSLPILW----DETVFAHAPKLWRELNRQGLKYGWTQSVHDEQGAH 125 Query: 112 --LLPFAGIAFPVRLGFHKN--GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 L A P+ + H GY IF S+ L H + ++D L + K Sbjct: 126 CSLFSLARSHCPIDIEEHYANLGYAIFASQRL----------HALASKKLSDALAIQPKC 175 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +L+ RE L+ + +G T+ E+ L LS TVN ++ S KL+ N+I A+AK Sbjct: 176 -----HLSPREIEVLRWSAEGKTASEVGRILCLSERTVNFHVCSCMRKLNVSNKISAVAK 230 Query: 228 AIRFGYI 234 A + I Sbjct: 231 AAQIHVI 237 >gi|213691407|ref|YP_002321993.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522868|gb|ACJ51615.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 220 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 33/54 (61%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +NLT RET + L GYTS+EI + LG+ TV Y+ T K+D NR QA+ Sbjct: 158 KNLTRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVTEKMDVKNRTQAV 211 >gi|239834457|ref|ZP_04682785.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301] gi|239822520|gb|EEQ94089.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301] Length = 260 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A+A A+ G Sbjct: 191 LTPREVDCLRWAANGKTDGEIAEILNIARWTVVTYLQNAKIKLNCSNRTSAVATALSLGI 250 Query: 234 I 234 I Sbjct: 251 I 251 >gi|86604925|ref|YP_473688.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86553467|gb|ABC98425.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 198 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 39/62 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL +G +++IA +LGLS+ TV Y +A KLDA +R+ A+ KA + G Sbjct: 137 KLTPRELCVLQLMKEGLANKQIARRLGLSIETVKEYASAAYRKLDASDRVTALLKAQQLG 196 Query: 233 YI 234 + Sbjct: 197 IL 198 >gi|323139012|ref|ZP_08074072.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242] gi|322395766|gb|EFX98307.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242] Length = 267 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 22/165 (13%) Query: 83 GLLPIIWQSIQE-ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 G+LPI W I + +I + L+ G G++ P+R G H + +FT + Sbjct: 97 GILPIDWSEIDRGDPIIRKFFGEAQELDVGA---NGMSIPIR-GRHGE-FALFT----VT 147 Query: 142 ANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTE-----------RETSCLQLAGDGY 189 +NE +E +I D + + + ++A R+ E RE SCL+ G Sbjct: 148 SNENALEWRAIRRDLIRDLMVVAWNFHAAALRSCGELAEPGDVHLPLREASCLRWKALGK 207 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T EEI L +S HTV +L SA +L+ N +AKA+ G I Sbjct: 208 TDEEIGRILVISPHTVRFHLESARARLNTANTTHTVAKALALGLI 252 >gi|220920519|ref|YP_002495820.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945125|gb|ACL55517.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 123 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G +++ IA +LG+SVHT ++GS KLDA R A+A A R G Sbjct: 60 GLTPREIEVLSLLAEGASNKAIARRLGISVHTAKFHVGSLLDKLDATGRTDAVAHAARRG 119 Query: 233 YI 234 I Sbjct: 120 VI 121 >gi|86608718|ref|YP_477480.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557260|gb|ABD02217.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 198 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 39/62 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL +G +++IA +LGLS+ TV Y +A KLDA +R+ A+ KA + G Sbjct: 137 KLTPRELCVLQLMKEGLANKQIARRLGLSIETVKEYASTAYRKLDASDRVTALLKAQQLG 196 Query: 233 YI 234 + Sbjct: 197 IL 198 >gi|86359968|ref|YP_471858.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86284070|gb|ABC93131.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 264 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 41/67 (61%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S LTERE CL+ + +GY+++EI+ + SV TV +L +A KL A NR QA Sbjct: 182 RKDKSVGIRLTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKLGARNRTQA 241 Query: 225 IAKAIRF 231 + +A + Sbjct: 242 VVRATHY 248 >gi|148554913|ref|YP_001262495.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148500103|gb|ABQ68357.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 278 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 24/135 (17%) Query: 116 AGIAFPVRLGFHKNGYVIFTS----------------EFLMLANEVIIEAHGACYQVITD 159 AGI PV L F + G V F+ E L L + IE + Sbjct: 136 AGIVVPVHLPFSRIGMVSFSCRDNRRDDLSRELDEHFETLYLLGHLFIEGYAR------- 188 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 LE + A LT E +CL+ G T +EIA +G + T+ +L +A +KL A Sbjct: 189 -LETGDRWLPDAVTLTRLEVNCLRWVARGKTDDEIATIMGRARPTIRFHLQNAAIKLGAA 247 Query: 220 NRIQAIAKAIRFGYI 234 NR QA+ +A + GY+ Sbjct: 248 NRSQAVFRAGQLGYL 262 >gi|251794754|ref|YP_003009485.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542380|gb|ACS99398.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 200 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+LA +G + EIA +L LS TV YL A KLDA NRI AI A + G+ Sbjct: 139 LTEREREVLRLAREGLPAGEIASRLFLSAGTVRNYLSEAIQKLDAKNRIDAIGIAEKNGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|320109005|ref|YP_004184595.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319927526|gb|ADV84601.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 203 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L AG+G T+ E+A +LGLS TV YL A KL AVNRI A A G+ Sbjct: 143 LTERERQILLRAGEGRTTAEVARELGLSEGTVRNYLSEAMSKLGAVNRIDAARMARAKGW 202 Query: 234 I 234 + Sbjct: 203 L 203 >gi|239831035|ref|ZP_04679364.1| Transcriptional activator protein solR [Ochrobactrum intermedium LMG 3301] gi|239823302|gb|EEQ94870.1| Transcriptional activator protein solR [Ochrobactrum intermedium LMG 3301] Length = 238 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 17/189 (8%) Query: 59 LDSGDIPNILIETYGDDFLFHFN-------SGLLPIIWQS--IQEETVIESSGQ-LSVRL 108 L G +P + Y D + + + P++W S E I + Q +R+ Sbjct: 54 LSFGSLPQEWTDHYADKKYADIDPLVRKALNSIEPLVWSSKLFAEAPQIWTDAQRFGIRV 113 Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFK 165 +A L F ++G + + E ML ++ A H A Y + L++ Sbjct: 114 GISQPCWAAQGVFGMLSFLRSGPALSSGEISMLRRQLQTVANMLHLAMY----EHLDVPT 169 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + NLT RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+ Sbjct: 170 MNCVSEVNLTMREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAV 229 Query: 226 AKAIRFGYI 234 AKA FG + Sbjct: 230 AKARTFGLL 238 >gi|297190907|ref|ZP_06908305.1| DNA-binding response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297150671|gb|EDY66609.2| DNA-binding response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 287 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 68/137 (49%), Gaps = 17/137 (12%) Query: 113 LPFAGIAFPVRLGF--HKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFL------- 161 LP G + PVR GF H+ G F L A V ++ A A ++++TD+ Sbjct: 131 LPLPGRSRPVR-GFLIHRAGR-DFDERALQYAAAVQPLLRAAAAQHELLTDYAASGAEGG 188 Query: 162 ELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + A R LT RET+ L+L +G ++ I +L +SV TV+ +L S KLD Sbjct: 189 DPGAACPPAVRTSDLGLTPRETAVLRLLAEGLPAQTIGRRLHVSVRTVHKHLQSVYRKLD 248 Query: 218 AVNRIQAIAKAIRFGYI 234 A +R+ A+ A R G + Sbjct: 249 APDRLSAVLNAQRLGLL 265 >gi|222081950|ref|YP_002541315.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726629|gb|ACM29718.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 260 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 10/122 (8%) Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 G GI F F +N + + ++F +LA+ H Y + +RS Sbjct: 138 GDYATVTGIRFGANKDFERNA-LRYIADFGLLAHVF----HETAYALFDS-----SERSV 187 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LTERE CL+ + +G +++EI+ + SV TV +L SA KL A NR QA+ +A Sbjct: 188 GKMRLTERERECLRHSAEGLSAKEISRIIDRSVPTVVMHLNSAAKKLGAKNRTQAVVRAT 247 Query: 230 RF 231 + Sbjct: 248 HY 249 >gi|332885458|gb|EGK05707.1| hypothetical protein HMPREF9456_02509 [Dysgonomonas mossii DSM 22836] Length = 245 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 41/68 (60%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SS A +LT RE + LQL +G S+EI+E+L +SVHTVN + KLD N ++A+ Sbjct: 178 SSKASDLTTREIAVLQLIKEGLLSKEISEQLFISVHTVNTHRQRILEKLDVNNSMEAVKY 237 Query: 228 AIRFGYIC 235 A G I Sbjct: 238 ASALGLIS 245 >gi|320457478|dbj|BAJ68099.1| putative two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 132 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 33/54 (61%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +NLT RET + L GYTS+EI + LG+ TV Y+ T K+D NR QA+ Sbjct: 70 KNLTRRETEVMSLCARGYTSQEIGDYLGIGESTVKTYIKRVTEKMDVKNRTQAV 123 >gi|260575467|ref|ZP_05843466.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2] gi|259022387|gb|EEW25684.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2] Length = 245 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Query: 150 HGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 HG Q IT L+ +R LT RE CL G ++IAE LG+ TV+ Sbjct: 157 HGPKLQAITALLDAQVRRDHLPMLIGLTPREVDCLSWLAAGLRPDQIAETLGIGYRTVDK 216 Query: 208 YLGSATVKLDAVNRIQAIAKAI 229 Y+ SA KL A R QA+AKA+ Sbjct: 217 YIVSARGKLRARTRDQAVAKAL 238 >gi|302545152|ref|ZP_07297494.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462770|gb|EFL25863.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 201 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L H G+++ S L + + A G +VI L L + LT RE L+ Sbjct: 94 LAAHVAGFLLKDSSPATLCDAIRAVARG--ERVIDPQLAL-AALDDGPQPLTPRELEVLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A +G + IA +L LSV TV YL SA KLDA NR+ AI A G++ Sbjct: 151 MASEGEEAARIAARLFLSVGTVRNYLTSAVTKLDARNRVDAIRIAREAGWL 201 >gi|269793732|ref|YP_003313187.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269095917|gb|ACZ20353.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 204 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 56/111 (50%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ T+ L++A+ V+ H V + + +S LT RE L Sbjct: 97 LAVGVRGFLPKTASALVVAD-VVRSVHAGGRYVDPELAA--EAIASGDSPLTAREADVLA 153 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG +EIA+++ LS TV YL +A +KL NR +A A A R G+I Sbjct: 154 LAADGSPVDEIAQRVSLSAGTVRNYLSTAVMKLGVSNRHEAAATARRHGWI 204 >gi|167837236|ref|ZP_02464119.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 237 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 AH A +++ L K + R LTERE L+ A DG TS EI++ L +SV TVN + Sbjct: 156 AHAALGRMM-----LPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDTVNFH 210 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYIC 235 + +A +KL N+ A+ +A G + Sbjct: 211 VKNAILKLRTANKTAAVVRAAMLGLLS 237 >gi|167581251|ref|ZP_02374125.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167619336|ref|ZP_02387967.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257138549|ref|ZP_05586811.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] Length = 237 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 5/91 (5%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 ++ AH A +++ L K + R LTERE L+ A DG TS EI++ L +SV T Sbjct: 152 LVRTAHAALGRMM-----LPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDT 206 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 VN ++ +A +KL N+ A+ +A G + Sbjct: 207 VNFHVKNAILKLRTANKTAAVVRAAMLGLLS 237 >gi|209552217|ref|YP_002284132.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539329|gb|ACI59261.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 258 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/71 (40%), Positives = 44/71 (61%), Gaps = 2/71 (2%) Query: 163 LFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LF K+ S LTERE CL+ + +G++++EI+ +G SV TV +L +A KL A N Sbjct: 179 LFDKKALSVGTVRLTERERECLRHSAEGFSAKEISRIIGRSVPTVVMHLNAAAKKLGARN 238 Query: 221 RIQAIAKAIRF 231 R QA+ +A + Sbjct: 239 RTQAVVRATHY 249 >gi|331092883|ref|ZP_04586362.2| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331125377|ref|ZP_04592751.2| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020753|gb|EGI00810.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027159|gb|EGI07214.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 235 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 77/164 (46%), Gaps = 13/164 (7%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR----LGFHKN 129 D + H +P+ W + S R GL G++ P+R LG Sbjct: 70 DPIVKHCRRHFMPLFWGGARRRARGRSKEFWRARERHGLS--QGVSIPLRCREMLGSFNV 127 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQLA 185 + + ++E +EV + G + ++ LE ++ A + +LT RET L+ + Sbjct: 128 AHPVDSNE--EFDDEVNV-TFGVLFMLVPFLLEGSQRHLKAPGEQSCSLTMRETEVLKWS 184 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 G G T+ EI+ LG S TVN ++ +A+ KL A NR+QA+ A+ Sbjct: 185 GAGKTTWEISRILGCSERTVNFHIANASRKLGASNRLQAVGMAL 228 >gi|170739988|ref|YP_001768643.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168194262|gb|ACA16209.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 118 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G +++ IA +LG+SVHT ++GS KLDA R A+A A R G Sbjct: 55 GLTPREIEVLGLLAEGASNKAIARRLGISVHTAKFHVGSLLDKLDATGRTDAVAHAARRG 114 Query: 233 YI 234 I Sbjct: 115 VI 116 >gi|254465085|ref|ZP_05078496.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium Y4I] gi|206685993|gb|EDZ46475.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium Y4I] Length = 251 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 161 LELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 LEL R++ A+ L+ RE L L GY+ ++A+ L +S HT+ Y+ SA KL A+ Sbjct: 175 LELEPSRTAEHAQPLSPREVDALTLLAIGYSRAQVAQTLAISEHTLRVYIESARFKLGAI 234 Query: 220 NRIQAIAKAIRFGYI 234 N AIA+A+ G I Sbjct: 235 NTTHAIARAVSLGLI 249 >gi|320333213|ref|YP_004169924.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754502|gb|ADV66259.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 194 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L DG +++EIA LG+S TV +L VKLDA +R+ A+ KA G Sbjct: 132 TLTPREGDVLRLLADGQSNKEIARSLGVSPETVKEHLARMYVKLDAPDRVSALNKARTLG 191 Query: 233 YI 234 I Sbjct: 192 LI 193 >gi|260770016|ref|ZP_05878949.1| transcriptional activator protein vanR [Vibrio furnissii CIP 102972] gi|260615354|gb|EEX40540.1| transcriptional activator protein vanR [Vibrio furnissii CIP 102972] Length = 240 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Query: 167 RSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + +A R LT RE CL A +G ++ EIA+ + S TV ++ +A KL A NR QAI Sbjct: 168 KDAAPRIELTARENQCLTWAAEGKSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAI 227 Query: 226 AKAIRFGYI 234 KAI GYI Sbjct: 228 TKAILGGYI 236 >gi|315182540|gb|ADT89453.1| Transcriptional activator protein vanR [Vibrio furnissii NCTC 11218] Length = 240 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/69 (44%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Query: 167 RSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + +A R LT RE CL A +G ++ EIA+ + S TV ++ +A KL A NR QAI Sbjct: 168 KDAAPRIELTARENQCLTWAAEGKSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAI 227 Query: 226 AKAIRFGYI 234 KAI GYI Sbjct: 228 TKAILGGYI 236 >gi|260773944|ref|ZP_05882859.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP 69.14] gi|260610905|gb|EEX36109.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP 69.14] Length = 240 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE CL A +G ++ EIA+ + S TV +L +A KL A NR QAI KAI GY Sbjct: 176 LTCREGQCLSWAAEGKSAWEIAQIINTSERTVKFHLSNACKKLGATNRYQAITKAILGGY 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|296282761|ref|ZP_06860759.1| regulatory protein, LuxR [Citromicrobium bathyomarinum JL354] Length = 252 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 63/131 (48%), Gaps = 16/131 (12%) Query: 116 AGIAFPVRLGFHKNGYVIFTS---EFLMLANE---------VIIEAHGACYQVITDFLEL 163 A I PV + F + G V F + + LA + ++ A + Y V+ E Sbjct: 122 AAIVVPVHMAFGRIGAVSFNPLDEDRIDLAADYEEYADLFAILSRAFISSYTVVMTSPEP 181 Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A L++RE CL+ A G T EI+ + S TV ++ +A++KL+AVNR Q Sbjct: 182 LP----AGSRLSKREVECLRWAAIGKTDLEISMIMSRSRATVRFHMHNASIKLNAVNRSQ 237 Query: 224 AIAKAIRFGYI 234 + KA + GYI Sbjct: 238 TVFKAAQLGYI 248 >gi|167563421|ref|ZP_02356337.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167570595|ref|ZP_02363469.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 237 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 5/91 (5%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 ++ AH A +++ L K + R LTERE L+ A DG TS EI++ L +SV T Sbjct: 152 LVRTAHAALGRMM-----LPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDT 206 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 VN ++ +A +KL N+ A+ +A G + Sbjct: 207 VNFHVKNAILKLRTANKTAAVVRAAMLGLLS 237 >gi|169826466|ref|YP_001696624.1| hypothetical protein Bsph_0878 [Lysinibacillus sphaericus C3-41] gi|168990954|gb|ACA38494.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 377 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 36/60 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE+ L L +GY +++I L LS HTV Y+ S KL A NR Q +A A R G Sbjct: 315 HLTERESMILGLLAEGYDNKKIGGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASAFRLG 374 >gi|83720643|ref|YP_442349.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83654468|gb|ABC38531.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 241 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 5/91 (5%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 ++ AH A +++ L K + R LTERE L+ A DG TS EI++ L +SV T Sbjct: 156 LVRTAHAALGRMM-----LPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDT 210 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 VN ++ +A +KL N+ A+ +A G + Sbjct: 211 VNFHVKNAILKLRTANKTAAVVRAAMLGLLS 241 >gi|269127167|ref|YP_003300537.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312125|gb|ACY98499.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 201 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G G + IAE L LS TV YL SA KLDA NR+ A+ A G+ Sbjct: 141 LTERERQILRLIGRGMEAPGIAEALHLSQGTVRNYLSSAMTKLDAPNRLAAVRTAEEMGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|126650999|ref|ZP_01723210.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905] gi|126592200|gb|EAZ86249.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905] Length = 377 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 28/60 (46%), Positives = 36/60 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE+ L L +GY +++I L LS HTV Y+ S KL A NR Q +A A R G Sbjct: 315 HLTERESMILGLLAEGYDNKKIGGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASAFRLG 374 >gi|319788214|ref|YP_004147689.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466726|gb|ADV28458.1| two component transcriptional regulator, LuxR family [Pseudoxanthomonas suwonensis 11-1] Length = 200 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/63 (49%), Positives = 39/63 (61%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + A L ERE L+LAG+G +S IAE+LGLS TV YL A KL A NR Sbjct: 128 ELALEAWTEADPLNERERQVLRLAGEGLSSTRIAERLGLSHGTVRNYLSEAIGKLGAANR 187 Query: 222 IQA 224 ++A Sbjct: 188 VEA 190 >gi|76811685|ref|YP_334182.1| ATP-dependent transcription regulator LuxR [Burkholderia pseudomallei 1710b] gi|124386221|ref|YP_001028861.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10229] gi|126450742|ref|YP_001081227.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10247] gi|167003830|ref|ZP_02269610.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|167720437|ref|ZP_02403673.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei DM98] gi|167816634|ref|ZP_02448314.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167825038|ref|ZP_02456509.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|167846546|ref|ZP_02472054.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167895126|ref|ZP_02482528.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167903510|ref|ZP_02490715.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|167919762|ref|ZP_02506853.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|242317090|ref|ZP_04816106.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254195948|ref|ZP_04902374.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|76581138|gb|ABA50613.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] gi|124294241|gb|ABN03510.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] gi|126243612|gb|ABO06705.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10247] gi|169652693|gb|EDS85386.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|242140329|gb|EES26731.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|243060693|gb|EES42879.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] Length = 237 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 32/87 (36%), Positives = 48/87 (55%), Gaps = 5/87 (5%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 AH A +++ L K + R LTERE L+ A DG TS EI++ L +SV TVN + Sbjct: 156 AHAALGRMM-----LPKLMADPERGLTEREVEVLKWAADGKTSGEISKILAISVDTVNFH 210 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYIC 235 + +A +KL N+ A+ +A G + Sbjct: 211 VKNAILKLRTANKTAAVVRAAMLGLLS 237 >gi|53725659|ref|YP_102421.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei ATCC 23344] gi|121600864|ref|YP_993677.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei SAVP1] gi|126442199|ref|YP_001059696.1| ATP-dependent transcription regulator LuxR [Burkholderia pseudomallei 668] gi|126451641|ref|YP_001066980.1| ATP-dependent transcription regulator LuxR [Burkholderia pseudomallei 1106a] gi|134277810|ref|ZP_01764525.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|217421088|ref|ZP_03452593.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226200000|ref|ZP_03795550.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237813089|ref|YP_002897540.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238562977|ref|ZP_00439585.2| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|254177786|ref|ZP_04884441.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254184304|ref|ZP_04890894.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1655] gi|254199322|ref|ZP_04905688.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|254205635|ref|ZP_04911987.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|254261005|ref|ZP_04952059.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254296964|ref|ZP_04964417.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|254357791|ref|ZP_04974064.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|52429082|gb|AAU49675.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|121229674|gb|ABM52192.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei SAVP1] gi|126221692|gb|ABN85198.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] gi|126225283|gb|ABN88823.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|134251460|gb|EBA51539.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|147748918|gb|EDK55992.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|147753078|gb|EDK60143.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|148026918|gb|EDK84939.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|157806879|gb|EDO84049.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|160698825|gb|EDP88795.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|184214835|gb|EDU11878.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1655] gi|217396500|gb|EEC36517.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225928056|gb|EEH24093.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237504732|gb|ACQ97050.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238521581|gb|EEP85031.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|254219694|gb|EET09078.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 241 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 39/64 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LTERE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A Sbjct: 178 RGLTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAML 237 Query: 232 GYIC 235 G + Sbjct: 238 GLLS 241 >gi|212638021|ref|YP_002314541.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212559501|gb|ACJ32556.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 208 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Query: 131 YVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 Y++ TS+ +AN + HG +V + +K S LT RE L L Sbjct: 101 YMLKTSKASEIANAIRATFHGQSVFEPEVTGKMMNSMRKPSLPHEQLTSREMEVLLLIAQ 160 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIAE+L +S+ TV ++ + KLD +R QA+ A + G + Sbjct: 161 GKTNQEIAEELFISLKTVKVHVSNILAKLDVQDRTQAVIYAFKHGLV 207 >gi|21311443|gb|AAM46724.1|AF452135_9 LuxR2 [Aliivibrio salmonicida] Length = 223 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 92/185 (49%), Gaps = 14/185 (7%) Query: 54 LHNYDL---DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 L NY L + D N++ + D+ F +S PI W +++ + S Q++V E Sbjct: 35 LDNYPLYWRNYYDEANLIKDDPIVDYSFSHHS---PINWSIFEKQKKM--SNQINVIEEA 89 Query: 111 GLLP-FAGIAFPVRLGFHKNGYVIF-TSEFLMLANEVIIEAHGACYQVITDFLE----LF 164 + ++G +FP+ G + F +S+ + + + A + ++ + L+ + Sbjct: 90 KISGLYSGFSFPIHTKDGGFGMISFASSQKEKYIDNLFLNACMSVPLILPELLDSNQRIT 149 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ LT+RE CL + +G + EI++ LG S TV +L ++ +KL A NR Q+ Sbjct: 150 KEDQQVHTKLTKREKECLIWSCEGKSRWEISKILGCSERTVTFHLANSQLKLGANNRCQS 209 Query: 225 IAKAI 229 I+KAI Sbjct: 210 ISKAI 214 >gi|167739431|ref|ZP_02412205.1| LuxR family regulatory protein [Burkholderia pseudomallei 14] gi|167911761|ref|ZP_02498852.1| LuxR family regulatory protein [Burkholderia pseudomallei 112] gi|254191335|ref|ZP_04897839.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|157939007|gb|EDO94677.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] Length = 237 Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 39/63 (61%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LTERE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A Sbjct: 174 RGLTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAML 233 Query: 232 GYI 234 G + Sbjct: 234 GLL 236 >gi|162146990|ref|YP_001601451.1| two-component system regulatory protein [Gluconacetobacter diazotrophicus PAl 5] gi|209544054|ref|YP_002276283.1| two component LuxR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785567|emb|CAP55138.1| putative two-component system regulatory protein [Gluconacetobacter diazotrophicus PAl 5] gi|209531731|gb|ACI51668.1| two component transcriptional regulator, LuxR family [Gluconacetobacter diazotrophicus PAl 5] Length = 201 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 56/101 (55%), Gaps = 5/101 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GY++ + LA + A G + + D + + A LT RE L+LA +G Sbjct: 100 GYLLKDAPVEQLAAAIRTVATGGTF-IPPDLMA--AAWDAGADPLTARERDALRLAEEGL 156 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA--IAKA 228 ++++IA +LGLS TV YL +A KL+A NRI+A IA+A Sbjct: 157 SNKDIARRLGLSPGTVRNYLSTAAGKLNAANRIEAGRIARA 197 >gi|197658985|emb|CAR47858.1| putative DNA binding response regulator [Rhodococcus sp. PY11] Length = 222 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 39/62 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA G T+ +IA KL +SV TV +L + KLDA +R A+A+A+R G Sbjct: 161 LTPRELDVLRLAATGLTTSQIAGKLHVSVPTVKTHLRNTYDKLDASDRTAAVAQALRLGL 220 Query: 234 IC 235 + Sbjct: 221 LA 222 >gi|4416228|gb|AAD20272.1| regulator [Streptomyces arenae] Length = 202 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE+ L LA +G + EIA +L L+V TV YL SA KL A NR+ A+ A G+ Sbjct: 141 LTERESDVLSLASEGAEASEIAAQLHLAVGTVRNYLSSAVTKLGARNRLDAVRIARDAGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|53719957|ref|YP_108943.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243] gi|52210371|emb|CAH36350.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243] gi|156105364|gb|ABU49181.1| BpsR5 [Burkholderia pseudomallei] Length = 241 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 39/63 (61%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LTERE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A Sbjct: 178 RGLTEREVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAML 237 Query: 232 GYI 234 G + Sbjct: 238 GLL 240 >gi|58580891|ref|YP_199907.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425485|gb|AAW74522.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae KACC10331] Length = 277 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 215 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 272 >gi|88812489|ref|ZP_01127738.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis Nb-231] gi|88790275|gb|EAR21393.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis Nb-231] Length = 249 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 81/176 (46%), Gaps = 23/176 (13%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG---GLLPFAGIAFPVRLGFHKNG 130 D + H + P+IWQ + + I+ +V E GL+ +G++ +R + G Sbjct: 77 DPAVQHCTRSIRPLIWQDLMLDPKIDEK-PFTVMQEAREFGLV--SGVSLSIRGSRGELG 133 Query: 131 YVIFTSEFLMLANEVIIEA------------HGACYQVITDFLELFKKRSSAARNLTERE 178 + F+SE I++ H A +++T F + LT RE Sbjct: 134 VLSFSSERTAQQTRSEIDSAIPDLYLLSAYVHEAVGRLVTQGSLPFNRP-----ELTARE 188 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL A +G TS EIA LG+S T +L +A +L+A +R QA+A+A+ G I Sbjct: 189 HECLLWAAEGKTSWEIARILGISERTAIFHLQNAARRLNASSRQQAVARAVSQGLI 244 >gi|29832167|ref|NP_826801.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609285|dbj|BAC73336.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 239 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 5/106 (4%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE---RETSCLQLAGDGY 189 I + ++ A + +I A G ++I DF+ ++ A R LTE RE L L G G Sbjct: 113 ILAAVRVVAAGDALI-APGVTRRLIQDFVA-SPEQPRARRELTEITEREREVLTLVGTGL 170 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 T+ EIAE+L +SV T YL KLDA +R+Q + A G + Sbjct: 171 TNTEIAERLFISVATAKTYLTRLLAKLDARDRVQLVIIAYEAGLVA 216 >gi|121606401|ref|YP_983730.1| regulatory protein, LuxR [Polaromonas naphthalenivorans CJ2] gi|120595370|gb|ABM38809.1| regulatory protein, LuxR [Polaromonas naphthalenivorans CJ2] Length = 222 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 69/162 (42%), Gaps = 8/162 (4%) Query: 75 DFLFHFNSGLLPII-WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 DF + P++ WQ I + + L G IAFP+ +G Y+ Sbjct: 67 DFGAPWRDSDAPLVAWQDISRAAFGDLGRWRRLWLAHGFQSVVRIAFPLTVGRAFECYLF 126 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSE 192 ++ E + + + L K+ + ARN L+ RE CL LA G T+ Sbjct: 127 SARQW-----PDRTEPSQLAWSAL-NIWPLVKRALAQARNPLSPRELECLDLAFQGMTAR 180 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + L S TVN +L +A KL N++ A+ +A FG I Sbjct: 181 KTGDMLACSERTVNFHLANAMNKLKVDNKMAAVQRACWFGLI 222 >gi|172056637|ref|YP_001813097.1| two component LuxR family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989158|gb|ACB60080.1| two component transcriptional regulator, LuxR family [Exiguobacterium sibiricum 255-15] Length = 209 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 4/109 (3%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN-LTERETSCLQLA 185 YV+ T+ +A + A G QV +E +K +S + LTERE LQL Sbjct: 100 SYVLKTASAFEIAEAIRKTADGQSVMAAQVTGKMMERLRKPTSHLHDDLTEREQEVLQLM 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++EIA++L +S+ TV ++ + KLD V+R QA+ A + + Sbjct: 160 ARGMANQEIADELFISLKTVKTHVSNILSKLDVVDRTQAVVYAFKHNIV 208 >gi|84622824|ref|YP_450196.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578132|ref|YP_001915061.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae PXO99A] gi|84366764|dbj|BAE67922.1| transcriptional regulator ahyR/asaR family [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522584|gb|ACD60529.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 254 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 >gi|150377825|ref|YP_001314420.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150032372|gb|ABR64487.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 243 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 36/57 (63%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 RNL+ RE+ C QL G S++IA LG+S + V YL SA +KL A QA+A+A Sbjct: 179 RNLSRRESQCFQLLATGRISKQIAADLGISENAVKLYLRSARMKLGAATSHQAVARA 235 >gi|209809708|ref|YP_002265247.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] gi|208011271|emb|CAQ81712.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] Length = 247 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 44/161 (27%), Positives = 82/161 (50%), Gaps = 11/161 (6%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP-FAGIAFPVRLGFHKNGYVI 133 D+ F +S PI W +++ + S Q++V E + ++G +FP+ G + Sbjct: 83 DYSFSHHS---PINWSIFEKQKKM--SNQINVIEEAKISGLYSGFSFPIHTKDGGFGMIS 137 Query: 134 F-TSEFLMLANEVIIEAHGACYQVITDFLE----LFKKRSSAARNLTERETSCLQLAGDG 188 F +S+ + + + A + ++ + L+ + K+ LT+RE CL + +G Sbjct: 138 FASSQKEKYIDNLFLNACMSVPLILPELLDSNQRITKEDQQVHTKLTKREKECLIWSCEG 197 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + EI++ LG S TV +L ++ +KL A NR Q+I+KAI Sbjct: 198 KSRWEISKILGCSERTVTFHLANSQLKLGANNRCQSISKAI 238 >gi|37223228|gb|AAQ90213.1| LuxR [Aliivibrio logei] Length = 232 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 74/154 (48%), Gaps = 8/154 (5%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE-GGLLPFAGIAFPVRLGFHKNGYV 132 D + + NS PI W + V + S + + GL+ G +FP+ + G + Sbjct: 81 DPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLI--TGFSFPIHTANNGFGML 138 Query: 133 IFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGD 187 F SE + + + A ++ ++ ++K + + +LT+RE CL A + Sbjct: 139 SFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACE 198 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 G +S +I++ LG SV TV +L +A +KL+ NR Sbjct: 199 GKSSWDISKILGCSVRTVTFHLTNAQMKLNTTNR 232 >gi|40804409|gb|AAR91700.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae] Length = 254 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 >gi|293491180|gb|ADE45144.1| transcriptional regulator [Xanthomonas campestris pv. mangiferaeindicae] Length = 254 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 >gi|293491178|gb|ADE45143.1| transcriptional regulator [Xanthomonas campestris pv. mangiferaeindicae] Length = 254 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 >gi|293491176|gb|ADE45142.1| transcriptional regulator [Xanthomonas campestris pv. mangiferaeindicae] Length = 254 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 >gi|294664209|ref|ZP_06729588.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606021|gb|EFF49293.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 254 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 >gi|220920328|ref|YP_002495629.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219944934|gb|ACL55326.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 246 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 72/188 (38%), Gaps = 27/188 (14%) Query: 65 PNILIETYGDDFLFHFNS---------------GLLPIIWQSIQEETVIESSGQLSVRLE 109 PN+L + D+L H++ P W + + + + Sbjct: 58 PNMLFNMWPKDWLTHYDRVGHYRFDPVVRQCYRTTEPFAWSEVPFDADQPDRARRVMDEA 117 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLE 162 G PV G V E + L+ ++ + A GA + D Sbjct: 118 AAFGLGFGFCIPVHDALGFQGGVSLAGERIDLSPKIRRGLHMLGLYAWGAATRTTED--- 174 Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++RS R L+ RE L A G T EEIA LG+S TV +L SA +K+ A N Sbjct: 175 --RRRSEPGRLLSARERDVLSWAAMGRTREEIATILGVSHETVATHLKSARIKIGARNTT 232 Query: 223 QAIAKAIR 230 Q + +A+R Sbjct: 233 QTVVEALR 240 >gi|238027274|ref|YP_002911505.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] gi|237876468|gb|ACR28801.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 237 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 38/63 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT+RE L+ A DG TS EI+ L +SV TVN ++ +A KL VN+ A+ +A Sbjct: 174 RGLTDREVEVLKWAADGKTSGEISTILRISVDTVNFHVKNAVAKLKTVNKTSAVVRAAML 233 Query: 232 GYI 234 G + Sbjct: 234 GLL 236 >gi|110634656|ref|YP_674864.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285640|gb|ABG63699.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 265 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 40/62 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ R+ + A +G T++EIAE+L +SVHT + +L + +L N + A+A+A+R G Sbjct: 203 HLSRRQREVVAWASEGLTADEIAERLNVSVHTADMHLRAVRTRLGVANTVHAVAEALRLG 262 Query: 233 YI 234 I Sbjct: 263 LI 264 >gi|291298065|ref|YP_003509343.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567285|gb|ADD40250.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 204 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 152 ACYQVITD---FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 AC ++ D L L + S LT RE L + G T +EIA KL LSV TV Y Sbjct: 122 ACGHLVMDSDVALGLLRANHSP---LTAREREVLSITHGGATPKEIASKLQLSVGTVRNY 178 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L +A KL A NRI+AI A G+I Sbjct: 179 LANACAKLGARNRIEAIRVAQSAGWI 204 >gi|294625280|ref|ZP_06703918.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600401|gb|EFF44500.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 254 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 >gi|317050861|ref|YP_004111977.1| regulatory protein LuxR [Desulfurispirillum indicum S5] gi|316945945|gb|ADU65421.1| regulatory protein LuxR [Desulfurispirillum indicum S5] Length = 243 Score = 53.1 bits (126), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL+ERE L +G ++EEI+ L +S TV +L KLDAVNR AIAKA+R G Sbjct: 181 NLSERERELLFWTAEGKSTEEISMILAISRDTVKYHLKRIYQKLDAVNRHHAIAKALRAG 240 Query: 233 YI 234 I Sbjct: 241 LI 242 >gi|78048691|ref|YP_364866.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926244|ref|ZP_08187599.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|78037121|emb|CAJ24866.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543331|gb|EGD14759.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 254 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 >gi|289664500|ref|ZP_06486081.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 267 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 205 LTRRERECLQYSAKGLTSKNIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 262 >gi|163760010|ref|ZP_02167094.1| putative transcription regulator protein [Hoeflea phototrophica DFL-43] gi|162282968|gb|EDQ33255.1| putative transcription regulator protein [Hoeflea phototrophica DFL-43] Length = 247 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 52/125 (41%), Gaps = 6/125 (4%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--- 173 G FPV GY+ ++ L + + + +EL + N Sbjct: 123 GYVFPVHGRRGLVGYLTIAGGYVELLRSEMAMMDALAKKAFWELVELLDPAAHERLNRPV 182 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +T+RE L+ G G TS E+ LGLS HTV+ Y+ KL A NR +A A R Sbjct: 183 TMQMTKREMQTLEYLGCGMTSNEMGTALGLSAHTVDWYMNGIQEKLHAKNRHHVVAIAFR 242 Query: 231 FGYIC 235 G I Sbjct: 243 LGLIS 247 >gi|92109527|ref|YP_571814.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91802609|gb|ABE64982.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 228 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/58 (48%), Positives = 37/58 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 NLT RE CL AG+G T+ E + LG+S TV ++ +A KL AV++ AIA AIR Sbjct: 166 NLTAREWDCLLWAGEGKTNWETSAILGISRSTVTKHIMAARAKLGAVSKAHAIATAIR 223 >gi|311894237|dbj|BAJ26645.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 206 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 38/67 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ A LT RE L LA DG EIA +L LS TV YL +A +KLDA R+ A+ Sbjct: 135 TAPASPLTAREAQALALAADGCEPREIARRLHLSAGTVRNYLAAAQLKLDARTRLDAVRI 194 Query: 228 AIRFGYI 234 A G++ Sbjct: 195 AREAGWL 201 >gi|166711196|ref|ZP_02242403.1| transcriptional regulator AhyR/AsaR family protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 254 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 192 LTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 >gi|295691166|ref|YP_003594859.1| LuxR family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295433069|gb|ADG12241.1| transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 249 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 E HGA ++++ + + + R LT+RE CL+ A G T +IA+ +G++ TV Sbjct: 159 ELHGAALRLVSAYRDGQDDDAPPVR-LTKREIQCLKWAAAGKTDADIAQIIGIAGPTVRF 217 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ +A +KL R QAI +A GYI Sbjct: 218 HVQNAALKLRVAGRAQAIHRATGLGYI 244 >gi|289668073|ref|ZP_06489148.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 230 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 168 LTRRERECLQYSAKGLTSKNIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 225 >gi|251771224|gb|EES51805.1| two component transcriptional regulator, LuxR family [Leptospirillum ferrodiazotrophum] Length = 219 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RET L+L +G ++ +IA LG+SV TV A++ S VKL A R A KA R G+ Sbjct: 159 LSARETEVLRLLAEGQSNRDIAVALGISVSTVKAHIQSILVKLSAATRADAAVKAFRKGW 218 Query: 234 I 234 I Sbjct: 219 I 219 >gi|92116611|ref|YP_576340.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799505|gb|ABE61880.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 201 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 39/62 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L L +G ++ IA +LG+SVHTV ++ + VKL A NR AIA A+R G Sbjct: 138 HLSPREAEVLALLAEGAPNKVIARRLGISVHTVKFHVAALLVKLGAANRTDAIATAMRQG 197 Query: 233 YI 234 + Sbjct: 198 LV 199 >gi|159045392|ref|YP_001534186.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157913152|gb|ABV94585.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 236 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 108/248 (43%), Gaps = 46/248 (18%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSA--------LDFPRRQQLICELHNYDLD 60 +++ SL ++ RL ++ ++ NFA + ++++ D P ++ I ++D Sbjct: 13 QEAKSLDDVQARLFGLRESLEVENFAYHCLDASGNKYGAMTYDAPWVKRYI------EMD 66 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE-------------ETVIESSGQLSVR 107 + ++ TY FH P+ W+ + ET + + G LSV Sbjct: 67 YARVDPVIKGTYQR---FH------PVDWKQLDWSPKAAREFMGEALETGVGNQG-LSVP 116 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + G FA F V + + E+L I+ AH + LEL + Sbjct: 117 VRGPNGQFA--VFSVNNRATDAAWESYQKEYL---KTFILAAHFINQRA----LELEEDI 167 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A+ L+ RE+ L +G + ++AEKL +S HT+ Y+ SA KL A N A+A+ Sbjct: 168 NPTAKPLSPRESDALTHLANGLSRGQVAEKLKISEHTLRVYIESARFKLGAANTTHAVAR 227 Query: 228 AIRFGYIC 235 A+ G I Sbjct: 228 AMVRGLIV 235 >gi|290960685|ref|YP_003491867.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260650211|emb|CBG73327.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 201 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L++A DG + +IA +L LSV TV YL + KL+A NR+ AI A G+ Sbjct: 141 LTPRETEVLRMAADGAEAADIASRLFLSVGTVRNYLTTVVTKLNARNRVDAIRVARESGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|227820843|ref|YP_002824813.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339842|gb|ACP24060.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 245 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 52/104 (50%), Gaps = 5/104 (4%) Query: 136 SEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYT 190 S L+ +VI+ G V+ +L FK + + LTERE CL +G T Sbjct: 142 SLMLLFPEDVILSQEGLRDIAVLASYLASFKAGAGVRHDRDFELTEREIECLFWIAEGKT 201 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SEEIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 202 SEEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRHNLV 245 >gi|297563175|ref|YP_003682149.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847623|gb|ADH69643.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 225 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 4/72 (5%) Query: 167 RSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 R+SAAR LTERE L L G G +++EIA +L ++ TV ++GS +LD NR+ Sbjct: 154 RASAARERVGRLTERERGVLALVGQGCSNDEIARRLAIAPGTVKVHVGSILTRLDVRNRV 213 Query: 223 QAIAKAIRFGYI 234 QA A G + Sbjct: 214 QAAVVAYEAGLV 225 >gi|269217647|ref|ZP_06161501.1| nitrate/nitrite response regulator protein NarL [Actinomyces sp. oral taxon 848 str. F0332] gi|269212582|gb|EEZ78922.1| nitrate/nitrite response regulator protein NarL [Actinomyces sp. oral taxon 848 str. F0332] Length = 212 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 6/112 (5%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGA------CYQVITDFLELFKKRSSAARNLTERETSCL 182 +GYV+ E LA + A G + +T + L+E+E L Sbjct: 99 SGYVLKDIEPFRLAEAIRATASGRTVLDERAARAVTQSVRGGSSADGGVEELSEQEKRVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA +G T+ +IA LG+ TV Y A KLD V+R A+ +A+R G I Sbjct: 159 ALAAEGMTNRQIATALGVGAATVKTYFSRAFAKLDVVDRTSAVVEAMRRGEI 210 >gi|255264823|ref|ZP_05344165.1| autoinducer-binding transcriptional regulator LuxR [Thalassiobium sp. R2A62] gi|255107158|gb|EET49832.1| autoinducer-binding transcriptional regulator LuxR [Thalassiobium sp. R2A62] Length = 258 Score = 52.8 bits (125), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 161 LELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 LE K R AA+ L+ RE + GY+ ++A L +S HT+ AY+ SA KL A+ Sbjct: 161 LEFEKNRVPEAAKGLSPREVDAMTFLAMGYSRAQVANTLSISEHTLRAYIESARFKLGAL 220 Query: 220 NRIQAIAKAIRFGYI 234 N A+A+A+ G I Sbjct: 221 NTTHAVARAMAHGLI 235 >gi|9297072|sp|P74946|VANR_VIBAN RecName: Full=Transcriptional activator protein vanR gi|1568660|gb|AAC45213.1| VanR [Listonella anguillarum] Length = 240 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 30/71 (42%), Positives = 38/71 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + K + LT RE CL A +G ++ EIA + S TV + +A KL A NR Q Sbjct: 166 YHKDAKPRAVLTAREVQCLAWAAEGKSAWEIATIINTSERTVKFHFSNACKKLGATNRYQ 225 Query: 224 AIAKAIRFGYI 234 AI KAI GYI Sbjct: 226 AITKAILGGYI 236 >gi|238023440|ref|YP_002907673.1| DNA-binding HTH domain-containing protein [Burkholderia glumae BGR1] gi|237880493|gb|ACR32822.1| DNA-binding HTH domain-containing protein [Burkholderia glumae BGR1] Length = 235 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 39/60 (65%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AA +LTERE L+ +G + +I+EKL +SV TVN ++G K A N++QA A+A+ Sbjct: 171 AAISLTERERQVLRWTVEGLNAFDISEKLNISVSTVNWHIGKVLAKFGATNKVQAAARAV 230 >gi|163758000|ref|ZP_02165088.1| putative GerE/LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284289|gb|EDQ34572.1| putative GerE/LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 224 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 40/63 (63%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + +LT+RE CL G+G TS+EIA +G+S +TVN Y+ S K A R +A+A Sbjct: 158 SDSLSDLTDREVECLSWIGEGKTSDEIALIIGISRNTVNNYITSIMNKTGAKTRSEAVAF 217 Query: 228 AIR 230 A+R Sbjct: 218 AVR 220 >gi|146275775|ref|YP_001165935.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] gi|145322466|gb|ABP64409.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] Length = 255 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 40/61 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE CL+ A G T EI+ +G S TV ++ +A++KL+AVNR Q + KA + GY Sbjct: 191 LSKREVECLRWAAIGKTDLEISMIMGRSRATVRFHIHNASMKLNAVNRSQTVFKAAQLGY 250 Query: 234 I 234 I Sbjct: 251 I 251 >gi|260425367|ref|ZP_05779347.1| autoinducer-binding transcriptional regulator LuxR [Citreicella sp. SE45] gi|260423307|gb|EEX16557.1| autoinducer-binding transcriptional regulator LuxR [Citreicella sp. SE45] Length = 242 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 40/69 (57%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R A+ L+ RE + L GY+ ++AE L +S HT+ Y+ SA KL A+N A+ Sbjct: 172 RRPEPAQPLSPREIEAMTLIAVGYSRAQVAETLSISEHTLRVYIESARFKLGAMNTTHAV 231 Query: 226 AKAIRFGYI 234 A+A+ G I Sbjct: 232 ARALSRGLI 240 >gi|118593225|ref|ZP_01550610.1| transcriptional regulatory protein [Stappia aggregata IAM 12614] gi|118434116|gb|EAV40772.1| transcriptional regulatory protein [Stappia aggregata IAM 12614] Length = 233 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 13/124 (10%) Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 L PF F N Y + E L A + + + + +R A Sbjct: 122 LYPFQAFVFASGPALQVNKYDLSNLEALA----------AAAFSRLRELGVISGQRPGA- 170 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L+L G T+ EIA+ L +S TV+A+L +A+VKL+A N+ + +A+R+ Sbjct: 171 --LSTRERKVLELTAYGKTAGEIADVLDISQRTVHAHLQNASVKLNASNKTHTVVEALRY 228 Query: 232 GYIC 235 G I Sbjct: 229 GQIS 232 >gi|86138963|ref|ZP_01057534.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. MED193] gi|85824194|gb|EAQ44398.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. MED193] Length = 255 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 39/64 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A+ L+ RE L L G GY+ ++A+ L +S HT+ Y+ SA KL A+N AIA+A+ Sbjct: 190 AQPLSPRELDALTLLGIGYSRAQVAQTLSISEHTLRVYIESARFKLGALNTTHAIARAVS 249 Query: 231 FGYI 234 G I Sbjct: 250 CGLI 253 >gi|299135525|ref|ZP_07028709.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298601649|gb|EFI57803.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 207 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE LQ AGDG +S EIA +L LS TV YL A KL A NR+ A A G+ Sbjct: 147 LSERERRILQRAGDGRSSAEIAAELRLSEGTVRNYLSEAIAKLGAANRVDAARIARARGW 206 Query: 234 I 234 + Sbjct: 207 L 207 >gi|223934800|ref|ZP_03626720.1| transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896755|gb|EEF63196.1| transcriptional regulator, LuxR family [bacterium Ellin514] Length = 122 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +V+ F + + +S A L+ RE L L GY +EIAE L +SV TVN Y Sbjct: 30 ASNIARRVVQSFQQT-RPHASEADELSNREQEVLDLLARGYLYKEIAENLNISVATVNTY 88 Query: 209 LGSATVKLDAVNRIQAIAKAIRFG 232 + KL +R QA+AK RF Sbjct: 89 IRRVYEKLHVRSRAQAVAKYTRFA 112 >gi|269839470|ref|YP_003324162.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269791200|gb|ACZ43340.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 188 Score = 52.4 bits (124), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 40/69 (57%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R LT+RE L L DG ++ IA +LG+S HTV ++GS KL A +R +A+ Sbjct: 118 RREPEEVPLTQREVEVLALMADGLPNKAIAARLGISEHTVKFHVGSILAKLGASSRAEAV 177 Query: 226 AKAIRFGYI 234 A A R G + Sbjct: 178 AIAARKGLL 186 >gi|262200121|ref|YP_003271329.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262083468|gb|ACY19436.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 267 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L LA G+++ IA++LG++VHT YL SA KL A R++A+ A R G Sbjct: 206 LTGREHDVLALAALGHSNARIADQLGITVHTTKGYLKSAMRKLGATTRLEAVITARRAGL 265 Query: 234 I 234 + Sbjct: 266 M 266 >gi|239980315|ref|ZP_04702839.1| LuxR response regulator receiver [Streptomyces albus J1074] gi|291452180|ref|ZP_06591570.1| regulator [Streptomyces albus J1074] gi|291355129|gb|EFE82031.1| regulator [Streptomyces albus J1074] Length = 203 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 52/102 (50%), Gaps = 3/102 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L H +GY++ + LA V G ++VI L L A LTERET L+ Sbjct: 95 LSAHVSGYLLKDAPPQELAAAVRRVVAG--HRVIDPQLAL-SAWDGADSPLTERETEVLR 151 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L G+ EIA++L LS TV YL + KL+A NR+ AI Sbjct: 152 LVAQGWEPSEIAKELHLSAGTVRNYLTTVVSKLNARNRVDAI 193 >gi|158312386|ref|YP_001504894.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158107791|gb|ABW09988.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 201 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/61 (50%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA G EEIA +L LS TV YL SA KL AVNR +A+ A G+ Sbjct: 141 LTPREAEVLELAAGGAPVEEIAARLSLSRGTVRNYLSSAVAKLGAVNRHEAVQLARVRGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|323137867|ref|ZP_08072942.1| two component transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] gi|322396870|gb|EFX99396.1| two component transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] Length = 273 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 45/75 (60%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A ++ F+++ K RS NLT RE S L G G+T+ ++A+ G+S++T+ +L + Sbjct: 163 AAGDMVFPFVDIRKMRSDPLENLTLRERSLLSALGSGHTNSQLAKDFGVSINTIKFHLRN 222 Query: 212 ATVKLDAVNRIQAIA 226 KL+ NR QAIA Sbjct: 223 LFEKLEVRNRAQAIA 237 >gi|83956361|ref|ZP_00964786.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter sp. NAS-14.1] gi|83839409|gb|EAP78592.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter sp. NAS-14.1] Length = 269 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 43/201 (21%) Query: 61 SGDIPNILIETYGDDFLFHFNS---------------GLLPIIWQSIQEETVIESSGQLS 105 + D +ILI TY ++ H+ S LLP+ W + ++G+ S Sbjct: 75 ANDDEHILITTYSTTWVEHYFSLKYQDVDPVLHAGSRSLLPVDWGHLS------TTGETS 128 Query: 106 VRLEGGLLPFA----GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL 161 G + G+ PVR + + S+ E+ C ++I+DF Sbjct: 129 RNFFGEAKEYGIGETGLTIPVRGMLGEEAMISLNSDLRARDWELF------CREMISDFT 182 Query: 162 ---ELFKKRSSAAR---------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 L + +R LT+RE L+ A G T+ E LGL+ TV+ YL Sbjct: 183 YFAHLLHDSVTRSRIHQHETDHPQLTKREAQVLRWAARGKTAWETGIILGLTEKTVSFYL 242 Query: 210 GSATVKLDAVNRIQAIAKAIR 230 G+A KL + QA+A A++ Sbjct: 243 GNACAKLKVATKTQAVAFAVK 263 >gi|90423713|ref|YP_532083.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90105727|gb|ABD87764.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 240 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 74/195 (37%), Gaps = 36/195 (18%) Query: 65 PN-ILIETYGDDFLFHF---------------NSGLLPIIWQSIQEETVIESSGQLSVRL 108 PN +L+ TY D ++ + +LPI W S++ T + Q Sbjct: 48 PNPVLLLTYDDAWVKRYVEQDYFGIDPVVVAGRDAVLPIDWMSVEHAT--PQARQFFAEA 105 Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--- 165 E + G P+R G + F + N H + + DF L Sbjct: 106 ESYGVGRHGFTLPIR------GPAAERALFTITTNATDDHWHRWRFSYLKDFHLLAHYLH 159 Query: 166 ---------KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + A R L+ RE CLQ G T +IA L LS V+ YL +A KL Sbjct: 160 DRAMRLAGLRLDHAMRPLSRREQQCLQGLVHGRTPGQIAGDLELSASAVHGYLRTARRKL 219 Query: 217 DAVNRIQAIAKAIRF 231 + QAIAKA+R Sbjct: 220 NCATHEQAIAKAVRL 234 >gi|307946119|ref|ZP_07661454.1| transcriptional regulator [Roseibium sp. TrichSKD4] gi|307769783|gb|EFO29009.1| transcriptional regulator [Roseibium sp. TrichSKD4] Length = 233 Score = 52.0 bits (123), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 3/83 (3%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A + + D + +R A L+ RE L+L G T+ EIA+ L +S TV+A+L + Sbjct: 152 AAFARLRDLGVVSGQRPGA---LSTRERKVLELTAYGKTAGEIADLLDISQRTVHAHLQN 208 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 A+VKL+A N+ + +A+R+G I Sbjct: 209 ASVKLNASNKTHTVVEALRYGQI 231 >gi|59940055|gb|AAX12566.1| LuxR-type transcriptional regulator [Aeromonas sp. 'CDC 2478-85'] Length = 260 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET CL LA +G TS EIA LG++ VN +L T K ++NR QAI K + G Sbjct: 183 LTARETECLFLATEGKTSGEIACILGITERPVNYHLNQVTRKTGSMNRCQAIIKGVSSGI 242 Query: 234 I 234 + Sbjct: 243 L 243 >gi|260777849|ref|ZP_05886742.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC BAA-450] gi|260605862|gb|EEX32147.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC BAA-450] Length = 240 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE CL A DG ++ EIA+ + + TV +L +A KL A NR QA+ +A+ G+ Sbjct: 176 LTNREIQCLTWAADGKSASEIADIVDCTERTVKFHLSNACKKLGATNRCQAVTRALLGGH 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|332991848|gb|AEF01903.1| DNA-binding response regulator, LuxR family protein [Alteromonas sp. SN2] Length = 201 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ +E+ L+LA DG + +IA+KL LS TV YL A KLDA NR+ A A + G+ Sbjct: 141 LSAKESKALKLAADGLKTHDIAQKLFLSEGTVRNYLSEAIAKLDATNRVDAARIAKQKGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|256392833|ref|YP_003114397.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359059|gb|ACU72556.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 201 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RET L+++ G EIA +L LS TV YLGSA KLDA NRI AI A G+ Sbjct: 141 LSQRETEVLRMSATGARPLEIAGRLFLSHGTVRNYLGSAVAKLDARNRIDAIRIAEEAGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|254501452|ref|ZP_05113603.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] gi|222437523|gb|EEE44202.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] Length = 236 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 41/61 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L G T+ EIA+ L +S TV+A+L +A+VKL+A N+ + +A+R+G Sbjct: 174 LSTRERKVLELTAYGKTAGEIADVLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQ 233 Query: 234 I 234 I Sbjct: 234 I 234 >gi|66767622|ref|YP_242384.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|66572954|gb|AAY48364.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris pv. campestris str. 8004] Length = 254 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G T++ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 192 LTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 >gi|91789884|ref|YP_550836.1| LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91699109|gb|ABE45938.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 208 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 75/163 (46%), Gaps = 10/163 (6%) Query: 75 DFLFHFNSGLLPII-WQSIQEETVIESSGQLS-VRLEGGLLPFAGIAFPVRLGFHKNGYV 132 DF + P++ WQ I + E+ G+ + L G IAFP+ +G Y Sbjct: 53 DFGAPWRDSDAPLVAWQDISR-SAFENLGRWRRLWLGHGYQSVVRIAFPLTVGRAFECY- 110 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTS 191 +F+ +E + A A + L K+ + AR+ L+ RE CL LA G T+ Sbjct: 111 LFSPRQWHDRSEAALLAWSA-----LNIWPLLKRVLAEARSPLSPRELECLSLAFQGRTA 165 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L S TVN +L +A KL N++ AI +A FG I Sbjct: 166 RESGDILVCSERTVNFHLSNAMAKLKVDNKLAAIQRACWFGLI 208 >gi|21232249|ref|NP_638166.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21114010|gb|AAM42090.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 258 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G T++ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 196 LTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 253 >gi|188990738|ref|YP_001902748.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|167732498|emb|CAP50692.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 272 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G T++ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 210 LTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 267 >gi|163744256|ref|ZP_02151616.1| Transcriptional activator protein RaiR, putative [Oceanibulbus indolifex HEL-45] gi|161381074|gb|EDQ05483.1| Transcriptional activator protein RaiR, putative [Oceanibulbus indolifex HEL-45] Length = 239 Score = 52.0 bits (123), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 40/69 (57%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R A + L+ RE + L GY ++A++L +S HT+ AY+ SA KL A N A+ Sbjct: 169 RRPGAVQALSPREVDAMTLLAVGYNRAQVAQRLSISEHTLRAYVESARFKLGASNTTHAV 228 Query: 226 AKAIRFGYI 234 A+A+ G I Sbjct: 229 ARALSRGLI 237 >gi|325919969|ref|ZP_08181953.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325549544|gb|EGD20414.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 254 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G T++ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 192 LTRRERECLQYSAKGLTAKSIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 >gi|121663600|emb|CAM12358.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae] Length = 239 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 163 LFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L K S AA +LT+RE L +G T+ EI E+L +S TV ++ + KL A N+ Sbjct: 164 LVPKLSPAASISLTKREREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANK 223 Query: 222 IQAIAKAIRFGYI 234 +QA+ KAI G I Sbjct: 224 VQAVVKAIGMGLI 236 >gi|326384064|ref|ZP_08205747.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] gi|326197224|gb|EGD54415.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] Length = 288 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G G T+ IAE+LG+ +HTV ++ + VKLDA +R +A+ A R Sbjct: 226 RLTAREQDVLSLLGAGLTNPAIAERLGIGLHTVKGHVKALLVKLDASSRFEAVVNARRVR 285 Query: 233 YI 234 I Sbjct: 286 LI 287 >gi|182434678|ref|YP_001822397.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463194|dbj|BAG17714.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 232 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I +FL+ K AR +TERE L+L +G++S+EIAE L +SV TV + Sbjct: 146 GAVTALIRNFLDRAKDGEDLPARAITEREEEILKLVAEGHSSKEIAEMLVISVKTVERHR 205 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G I Sbjct: 206 ANLLQKLGLRDRLELTRYAIRAGLI 230 >gi|218672192|ref|ZP_03521861.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 233 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 50/112 (44%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 AG+A P + F E L + E + + + + S L+ Sbjct: 119 AGVAMPTIAVDGRRLVFWFCGERAALGQSEVNELAIIILHALDAYNTVRRNEESVHNALS 178 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RE ++ G TS EI + L LS HTVNAY+ +A KLD VNR Q +AK Sbjct: 179 ARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAK 230 >gi|238024809|ref|YP_002909041.1| AHL receptor [Burkholderia glumae BGR1] gi|55509000|gb|AAV52804.1| AHL receptor [Burkholderia glumae BGR1] gi|237879474|gb|ACR31806.1| AHL receptor [Burkholderia glumae BGR1] Length = 239 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 163 LFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L K S AA +LT+RE L +G T+ EI E+L +S TV ++ + KL A N+ Sbjct: 164 LVPKLSPAASISLTKREREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANK 223 Query: 222 IQAIAKAIRFGYI 234 +QA+ KAI G I Sbjct: 224 VQAVVKAIGMGLI 236 >gi|158314991|ref|YP_001507499.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158110396|gb|ABW12593.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 223 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 37/69 (53%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R +LTERE L GY++ EIA +L LS HTV ++G KLD +RIQA+ Sbjct: 151 RPEIVHDLTEREREVFLLVARGYSNREIAGRLHLSEHTVKVHVGRILAKLDLRDRIQAVV 210 Query: 227 KAIRFGYIC 235 A G + Sbjct: 211 LAYESGLVI 219 >gi|311111869|ref|YP_003983091.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] gi|310943363|gb|ADP39657.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] Length = 210 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L++AG G T+ I E+L LS TV +L SA KL+A NR +AI A G+ Sbjct: 150 LTERETEILRVAGHGATARAIGEQLFLSPGTVRNHLSSAMAKLNASNRQEAIRIAADNGW 209 Query: 234 I 234 + Sbjct: 210 L 210 >gi|126728963|ref|ZP_01744778.1| imidazoleglycerol-phosphate dehydratase [Sagittula stellata E-37] gi|126710893|gb|EBA09944.1| imidazoleglycerol-phosphate dehydratase [Sagittula stellata E-37] Length = 298 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Query: 116 AGIAFPVRLGFHKNGYVI-FTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSS 169 AG+AFP+R+G + +I F + A + ++ HG A + ELFK Sbjct: 135 AGVAFPLRMGDPGHAALITFGGDHSAEAFDALLARHGWTLHTAALAGHARYAELFKTEFI 194 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT ++ L L G G ++IA KLG+S V L S K A NR A Sbjct: 195 ERNQLTAKQKELLCLIGHGMMDKQIAHKLGVSFSAVRQRLASVQAKTGAQNRADLAGLAA 254 Query: 230 RFGYI 234 R G + Sbjct: 255 RIGLV 259 >gi|325917294|ref|ZP_08179515.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325536514|gb|EGD08289.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 254 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 35/58 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CLQ + G T++ IA L S TVN +L SA KL A NR++A+ + + + Sbjct: 192 LTRRERECLQYSAKGLTAKSIAAALNRSTATVNLHLNSAARKLGARNRVEAVVRGMHY 249 >gi|300741965|ref|ZP_07071986.1| two-component system response regulator TcsR2 [Rothia dentocariosa M567] gi|300381150|gb|EFJ77712.1| two-component system response regulator TcsR2 [Rothia dentocariosa M567] Length = 210 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L++AG G T+ I E+L LS TV +L SA KL+A NR +AI A G+ Sbjct: 150 LTERETEILRVAGHGATARAIGEQLFLSPGTVRNHLSSAMAKLNASNRQEAIRIAADNGW 209 Query: 234 I 234 + Sbjct: 210 L 210 >gi|326775192|ref|ZP_08234457.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326655525|gb|EGE40371.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 230 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I +FL+ K AR +TERE L+L +G++S+EIAE L +SV TV + Sbjct: 144 GAVTALIRNFLDRAKDGEDLPARAITEREEEILKLVAEGHSSKEIAEMLVISVKTVERHR 203 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G I Sbjct: 204 ANLLQKLGLRDRLELTRYAIRAGLI 228 >gi|16330984|ref|NP_441712.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1653479|dbj|BAA18392.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 222 Score = 51.6 bits (122), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 43/68 (63%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+S + LTERE LQL DG ++ +IAEKL ++V TV ++ + KL A +R QA Sbjct: 154 RTSLSYGLTERELEVLQLIVDGCSNADIAEKLYITVGTVKTHVRNILNKLCANDRTQAAV 213 Query: 227 KAIRFGYI 234 +AIR G + Sbjct: 214 RAIRSGLV 221 >gi|323139047|ref|ZP_08074106.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] gi|322395707|gb|EFX98249.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] Length = 261 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+R++ L+ A G T EIA L +S HTV+ Y+ + L+AVNR AI A+R+G Sbjct: 199 KLTDRQSEVLKWAALGKTDWEIAAILDVSQHTVDKYMRQSKEALNAVNRTAAIVLAMRYG 258 Query: 233 YI 234 I Sbjct: 259 LI 260 >gi|167589289|ref|ZP_02381677.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 229 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 38/63 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT+RE L+ A DG TS EI+ L +SV TVN ++ +A KL A N+ A+ +A Sbjct: 166 RGLTDREVEVLKWAADGKTSGEISTILVISVDTVNFHVKNAVSKLKAANKTSAVVRATML 225 Query: 232 GYI 234 G + Sbjct: 226 GLL 228 >gi|229542987|ref|ZP_04432047.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229327407|gb|EEN93082.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 511 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQL DG ++ E AE L LS +TV Y+ S +L A NR +A KA+R G Sbjct: 449 QLSAREIHILQLLADGASTTEAAEMLHLSEYTVRDYVSSLMKRLHARNRTEAAVKAMRLG 508 Query: 233 YI 234 I Sbjct: 509 LI 510 >gi|167621873|ref|YP_001676658.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167351614|gb|ABZ74344.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 74 Score = 51.6 bits (122), Expect = 9e-05, Method: Composition-based stats. Identities = 30/63 (47%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT R L LA DG T+ +I + LGLS TVN YL A +L A NR QA+ A++ Sbjct: 4 RVLTPRLREVLILASDGLTAIQIGDALGLSYRTVNQYLSDAYKRLGARNRTQAVTIAVQR 63 Query: 232 GYI 234 G I Sbjct: 64 GEI 66 >gi|171914768|ref|ZP_02930238.1| DNA-binding response regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 212 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 2/76 (2%) Query: 161 LELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LELF + + A L+ RE L+L G+ +EIA++L LS+HTV+ YL KL+ Sbjct: 137 LELFSRFAPRHADYGLSTRERETLELMVQGFIRKEIADRLNLSLHTVDTYLRGVYRKLEV 196 Query: 219 VNRIQAIAKAIRFGYI 234 R A+AKA++ G + Sbjct: 197 NTRTGAVAKALKEGLV 212 >gi|158334639|ref|YP_001515811.1| two-component response regulator [Acaryochloris marina MBIC11017] gi|158304880|gb|ABW26497.1| two-component response regulator [Acaryochloris marina MBIC11017] Length = 222 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 45/69 (65%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++++ A L++RE LQL +G +++EIA +L LS+ T+ +Y+ KL +R+QA Sbjct: 154 RQTAPATVLSDREREVLQLISEGCSNQEIANQLYLSLGTIKSYVRMILNKLSVDDRVQAA 213 Query: 226 AKAIRFGYI 234 AKA+R G I Sbjct: 214 AKAVREGLI 222 >gi|17548999|ref|NP_522339.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 248 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 40/62 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RE ++ DG ++++IA+ L +S +TV+ ++ +A KL AVN+ A+ +A G Sbjct: 186 NLTNREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLHAVNKTAAVVRAAMLG 245 Query: 233 YI 234 Y+ Sbjct: 246 YL 247 >gi|330820206|ref|YP_004349068.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli BSR3] gi|327372201|gb|AEA63556.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli BSR3] Length = 240 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 163 LFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L K S AA LT+RE L +G T+ EI E+L +S TV ++ + KL A N+ Sbjct: 165 LVPKLSPAASVTLTKREREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGATNK 224 Query: 222 IQAIAKAIRFGYI 234 +QA+ KAI G I Sbjct: 225 VQAVVKAIGMGLI 237 >gi|95108205|emb|CAD17929.2| probable transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 238 Score = 51.6 bits (122), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 40/62 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RE ++ DG ++++IA+ L +S +TV+ ++ +A KL AVN+ A+ +A G Sbjct: 176 NLTNREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLHAVNKTAAVVRAAMLG 235 Query: 233 YI 234 Y+ Sbjct: 236 YL 237 >gi|238064365|ref|ZP_04609074.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237886176|gb|EEP75004.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 228 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 7/91 (7%) Query: 151 GACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 GA +I+ FL ++A R+LT RE ++LA DG +++EIA +L LS Sbjct: 131 GATKALISQFLATPPPNTAAPQPTTPGIRDLTNREREAMKLAADGKSNDEIARELNLSAL 190 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ A KL A +R Q + A + G + Sbjct: 191 TVRTHIQRAMTKLGARDRAQLVVLAYKNGLV 221 >gi|25027912|ref|NP_737966.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259506306|ref|ZP_05749208.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23493195|dbj|BAC18166.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259166086|gb|EEW50640.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 221 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G GYT+ EIA+ L LS TV + G +KL +R+QA+ +A G Sbjct: 159 RLTEREREVFVLVGRGYTNPEIAQALHLSESTVKTHFGRVLMKLGLTSRVQAVIRAYELG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|256617156|ref|ZP_05474002.1| salavaricin two-component system response regulator [Enterococcus faecalis ATCC 4200] gi|257087415|ref|ZP_05581776.1| salavaricin two-component system response regulator [Enterococcus faecalis D6] gi|312899812|ref|ZP_07759131.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0470] gi|256596683|gb|EEU15859.1| salavaricin two-component system response regulator [Enterococcus faecalis ATCC 4200] gi|256995445|gb|EEU82747.1| salavaricin two-component system response regulator [Enterococcus faecalis D6] gi|295113419|emb|CBL32056.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Enterococcus sp. 7L76] gi|311293062|gb|EFQ71618.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0470] gi|315025432|gb|EFT37364.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX2137] gi|315166424|gb|EFU10441.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX1341] Length = 197 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 49/95 (51%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +L V IE Q I +L K S L++RE L+ A +G+ +EIAE+L Sbjct: 98 LLNKNVTIEELYDDLQKIHHGTDLLPKCQSTLDVLSKREKEILKCAAEGFKQQEIAEQLH 157 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TVN +L S KL+ + I AI +AI G I Sbjct: 158 ISRRTVNNHLVSINNKLEVNSTISAIIQAIELGII 192 >gi|37223233|gb|AAQ90216.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 6/153 (3%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + NS PI W + V + S + + L G +FP+ + G + Sbjct: 81 DPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKSSGL-ITGFSFPIHTANNGFGMLS 139 Query: 134 FT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDG 188 F SE + + + A ++ ++ ++K + + +LT+RE CL A +G Sbjct: 140 FAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACEG 199 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +S +I++ LG S TV +L +A +KL+ NR Sbjct: 200 KSSWDISKILGCSKRTVTFHLTNAQMKLNTTNR 232 >gi|288960338|ref|YP_003450678.1| transcriptional regulator [Azospirillum sp. B510] gi|288912646|dbj|BAI74134.1| transcriptional regulator [Azospirillum sp. B510] Length = 287 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L A G TS E LGLS TVN YL +A K++A ++QA A+A+R G Sbjct: 226 KLSPREREVLDWASRGKTSWETGMVLGLSEKTVNFYLRNACQKMNAATKVQAAAQAVREG 285 Query: 233 YI 234 I Sbjct: 286 LI 287 >gi|223937111|ref|ZP_03629018.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894133|gb|EEF60587.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 209 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 37/71 (52%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + + + A+ L RE L L GY +EI KLGLSV TV Y+ +A K+ Sbjct: 134 VVGYFRTLGPATGKAKPLAPREEQVLTLLASGYLYKEIGAKLGLSVETVRTYVKNACTKM 193 Query: 217 DAVNRIQAIAK 227 +RI+A+AK Sbjct: 194 HVRSRIEAVAK 204 >gi|328951621|ref|YP_004368956.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328451945|gb|AEB12846.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 222 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 153 CYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+I DF + ++A A LTERE L+L G T++EIA++LGLS TV L Sbjct: 130 AEQIIQDFRAKREALTTAPAAELTEREVQILRLLAQGATNQEIADELGLSEKTVRNRLSE 189 Query: 212 ATVKLDAVNRIQAIAKAIRFG 232 KL NR QA AIR G Sbjct: 190 IFAKLHLNNRTQAALYAIREG 210 >gi|218460014|ref|ZP_03500105.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli Kim 5] Length = 198 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L +G TS EI++ L +S HTV+ Y+ KL A NR QA+A A R G Sbjct: 137 LTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHGL 196 Query: 234 IC 235 I Sbjct: 197 IS 198 >gi|149376825|ref|ZP_01894582.1| putative transcriptional regulator [Marinobacter algicola DG893] gi|149358946|gb|EDM47413.1| putative transcriptional regulator [Marinobacter algicola DG893] Length = 898 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 56/102 (54%), Gaps = 5/102 (4%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + L + + ++A G Y +TD K+++S A +++RE L+L G +++ Sbjct: 802 LLEKTWPQLPDTLFVDAIGRLYG-LTDM----KEQASLAEPISDREQGVLELIAQGLSNQ 856 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +IA++L +S+HTV + KL+ +R QAI +A G + Sbjct: 857 DIADRLHISLHTVKTHARRINAKLEVKSRTQAIVRARELGLL 898 >gi|307277198|ref|ZP_07558302.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX2134] gi|306506128|gb|EFM75294.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX2134] Length = 197 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 49/95 (51%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +L V IE Q I +L K S L++RE L+ A +G+ +EIAE+L Sbjct: 98 LLNKNVTIEELYDDLQKIHHGTDLLPKCQSTLDVLSKREKEILKCAAEGFKQQEIAEQLH 157 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TVN +L S KL+ + I AI +AI G I Sbjct: 158 ISRRTVNNHLVSINNKLEVNSTISAIIQAIELGII 192 >gi|307295298|ref|ZP_07575137.1| transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] gi|306878801|gb|EFN10020.1| transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 222 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 10/128 (7%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV-------ITDFLELFKKRS 168 A I PV L F + G V + F L ++ E Y + I D+ L +K Sbjct: 78 ASIVVPVHLPFSRIGMVALSC-FDNLRADLSAELKRHYYLIHLLSHFFINDYAHLSRKDR 136 Query: 169 --SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT E SCL+ G G T +E+A +G + T+ +L +A KL AVNR QA+ Sbjct: 137 WLPTWAALTPLEVSCLRWIGRGKTDDEVAAIMGRARPTIRFHLQNAAKKLGAVNRTQAVF 196 Query: 227 KAIRFGYI 234 A + G++ Sbjct: 197 LAAQLGFL 204 >gi|190893853|ref|YP_001980395.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190699132|gb|ACE93217.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 251 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L +G TS EI++ L +S HTV+ Y+ KL A NR QA+A A R G Sbjct: 190 LTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQGKLKAKNRQQAVALAFRHGL 249 Query: 234 IC 235 I Sbjct: 250 IS 251 >gi|37223211|gb|AAQ90202.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 8/142 (5%) Query: 86 PIIWQSIQEETVI-ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT-SEFLMLAN 143 PI W +++T+ ES + E GL+ G +FP+ + G + F S+ + + Sbjct: 93 PINWNVFEKKTIKKESPNVIKEAQESGLI--TGFSFPIHTASNGFGMLSFAHSDKDIYTD 150 Query: 144 EVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + + A ++ ++ ++K R + LT+RE CL A +G ++ +I++ LG Sbjct: 151 SLFLHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKECLAWASEGKSTWDISKILG 210 Query: 200 LSVHTVNAYLGSATVKLDAVNR 221 S TV +L + +KL+ NR Sbjct: 211 CSERTVTFHLTNTQMKLNTTNR 232 >gi|86359580|ref|YP_471472.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86283682|gb|ABC92745.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 251 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L +G TS EI++ L +S HTV+ Y+ KL A NR QA+A A R G Sbjct: 190 LTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHGL 249 Query: 234 IC 235 I Sbjct: 250 IS 251 >gi|229491816|ref|ZP_04385637.1| LuxR-family transcriptional regulator [Rhodococcus erythropolis SK121] gi|229321497|gb|EEN87297.1| LuxR-family transcriptional regulator [Rhodococcus erythropolis SK121] Length = 292 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 42/68 (61%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + +LT+RE L +AG G T+ +IA LGL++ TV +Y+ SA KL A R++A+ Sbjct: 225 SVSGASLTKREIDVLTVAGAGMTNNQIAGVLGLALFTVKSYMKSAMHKLGASTRLEAVVL 284 Query: 228 AIRFGYIC 235 A R G I Sbjct: 285 ARRGGMIA 292 >gi|37223202|gb|AAQ90196.1| LuxR [Vibrio fischeri ES114] Length = 230 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 8/142 (5%) Query: 86 PIIWQSIQEETVI-ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT-SEFLMLAN 143 PI W +++T+ ES + E GL+ G +FP+ + G + F S+ + + Sbjct: 91 PINWNVFEKKTIKKESPNVIKEAQESGLI--TGFSFPIHTASNGFGMLSFAHSDKDIYTD 148 Query: 144 EVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + + A ++ ++ ++K R + LT+RE CL A +G ++ +I++ LG Sbjct: 149 SLFLHASTNVPLMLPSLVDNYQKINTTRKKSDSILTKREKECLAWASEGKSTWDISKILG 208 Query: 200 LSVHTVNAYLGSATVKLDAVNR 221 S TV +L + +KL+ NR Sbjct: 209 CSERTVTFHLTNTQMKLNTTNR 230 >gi|311897240|dbj|BAJ29648.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 200 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/67 (46%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ LT RET L+LA DG EIAE+ LS TV YL SA KL A NR A+ Sbjct: 134 SAGDSPLTPRETDVLELAADGSPVAEIAERAALSPGTVRNYLSSAAGKLGAENRHAAVRI 193 Query: 228 AIRFGYI 234 A G++ Sbjct: 194 AREHGWL 200 >gi|296114148|ref|ZP_06832803.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295979224|gb|EFG85947.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 237 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 35/188 (18%) Query: 71 TYGDDFLFHF---------------NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 TY DD++ H+ LP W S+ + + Q ++ E + F Sbjct: 59 TYPDDWMQHYIDNCYQNIDPVIATARHEFLPYGWGSVG----VRNKSQKNMMQEFQDIGF 114 Query: 116 -AGIAFPVRL--------GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 +G A P+ + G N I + +L ++ I + ACY IT+ Sbjct: 115 RSGYAVPLPVSPSMLLLVGMASNDKEINFRDRTIL--QIAINQYHACYMQITN-----GG 167 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S +L++RE CL G + EI+ L +S +TV +L + KL A NRIQA+ Sbjct: 168 TSKEDCSLSDRERECLLWVAQGKNTLEISSILNISDNTVKYHLKNIMQKLGAHNRIQAVV 227 Query: 227 KAIRFGYI 234 +AI G I Sbjct: 228 QAINLGLI 235 >gi|328951086|ref|YP_004368421.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328451410|gb|AEB12311.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 216 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 153 CYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+I DF + ++A A LTERE L+L G T++EIA++LGLS TV L Sbjct: 130 AEQIIQDFRAKREALTTAPAAELTEREVQILRLLAQGATNQEIADELGLSEKTVRNRLSE 189 Query: 212 ATVKLDAVNRIQAIAKAIRFG 232 KL NR QA AIR G Sbjct: 190 IFAKLHLNNRTQAALYAIREG 210 >gi|56695286|ref|YP_165634.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria pomeroyi DSS-3] gi|56677023|gb|AAV93689.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria pomeroyi DSS-3] Length = 239 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 38/69 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ RNL+ RE + L GY+ ++A L +S HT+ Y+ SA KL A+N AI Sbjct: 169 RQPDQPRNLSPREVDAMTLLALGYSRAQVAHSLSISEHTLRVYIESARFKLGALNTTHAI 228 Query: 226 AKAIRFGYI 234 A A+ G I Sbjct: 229 ATAMSRGLI 237 >gi|116254365|ref|YP_770203.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115259013|emb|CAK10122.1| LuxR-family regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 251 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L +G TS EI++ L +S HTV+ Y+ KL A NR QA+A A R G Sbjct: 190 LTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFRHGL 249 Query: 234 I 234 I Sbjct: 250 I 250 >gi|229130601|ref|ZP_04259557.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|6759482|emb|CAB69808.1| putative two-component response regulator [Bacillus cereus ATCC 14579] gi|228652940|gb|EEL08822.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 159 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 99 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGW 158 Query: 234 I 234 I Sbjct: 159 I 159 >gi|222350143|emb|CAX32456.1| LuxR-type regulator [Rhizobium leguminosarum] Length = 251 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L +G TS EI++ L +S HTV+ Y+ KL A NR QA+A A R G Sbjct: 190 LTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFRHGL 249 Query: 234 I 234 I Sbjct: 250 I 250 >gi|163761091|ref|ZP_02168168.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162281642|gb|EDQ31936.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 260 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 37/58 (63%) Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 R+ + L L +G TS++IA +L +S HTVNA + S +L +NR Q IA AIR G I Sbjct: 202 RDAAILSLTSEGLTSQQIAVELKISEHTVNANVASMIRRLGVLNRPQLIATAIRKGLI 259 >gi|221633642|ref|YP_002522868.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] gi|221156159|gb|ACM05286.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] Length = 245 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 3/97 (3%) Query: 141 LANEVIIEAHGACYQVITDFLELFK-KRSSAA--RNLTERETSCLQLAGDGYTSEEIAEK 197 L NE+++ +V+ F EL + R+S+ LT RE L GY+++EIA+ Sbjct: 126 LINEMVLSRPFVASRVLDQFRELSRLDRTSSGFFSPLTPREIEILDCVARGYSNKEIAQA 185 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S TV ++ S KL +R QA+ A+R G+I Sbjct: 186 LNISDQTVKNHITSILRKLAVNDRTQAVIYALRHGWI 222 >gi|111024941|ref|YP_707361.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|40787253|gb|AAR90170.1| putative two-component system response regulator [Rhodococcus sp. DK17] gi|51338943|dbj|BAD36797.1| hypothetical protein [Rhodococcus sp. RHA1] gi|110823920|gb|ABG99203.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 212 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 38/55 (69%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+ A G ++ EIA++L L+ +TV YL SA KL+A NR++AIA+A Sbjct: 152 LTRREYEVLRFAAMGNSNPEIAQELSLARNTVKTYLQSAMQKLNARNRVEAIARA 206 >gi|52140211|ref|YP_086620.1| DNA-binding response regulator [Bacillus cereus E33L] gi|51973680|gb|AAU15230.1| DNA-binding response regulator [Bacillus cereus E33L] Length = 200 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|217979469|ref|YP_002363616.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217504845|gb|ACK52254.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 238 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 78/173 (45%), Gaps = 19/173 (10%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + +LP+ W ++++++ E+ +G L G+ PVR G + + + Sbjct: 72 DPMVRAMSRTVLPMDWAALRQKSAHETGIHFLPGEDGAL--RQGLTIPVR-GPSNSVWGL 128 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLEL---FKKRSSAAR---------NLTERETSC 181 F + +NE I ++++ D + KR+ +T RE Sbjct: 129 FIAT----SNESEICWASRRHELMIDLAHIAHYVHKRACDIHGEGHTIDLSTITRREIEA 184 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G EIA + +S TV A+L SA KL A+NR+ A AKA+R G I Sbjct: 185 LALVAQGKKPGEIAMLMRISNDTVKAHLDSARDKLQALNRVHAAAKALRAGLI 237 >gi|229087841|ref|ZP_04219955.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228695477|gb|EEL48348.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 189 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|229094465|ref|ZP_04225535.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228688929|gb|EEL42758.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 189 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTASEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|225867334|ref|YP_002752712.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225790979|gb|ACO31196.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 200 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|4218542|emb|CAA09631.1| putative two-component response regulator [Streptomyces violaceoruber] Length = 202 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 38/67 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA LTERE L+L +G + EIA +L LS TV YL S KL+A NR+ A+ A Sbjct: 136 SAESPLTEREMEVLRLTAEGDEAPEIAARLHLSTGTVRNYLTSVVTKLNARNRVDAVRIA 195 Query: 229 IRFGYIC 235 G++ Sbjct: 196 HESGWLV 202 >gi|567886|gb|AAD15247.1| regulatory protein [Streptomyces peucetius] Length = 202 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQLA G EIA KL LS TV YL + K+DA NR+ A+ A G+ Sbjct: 142 LTEREMEILQLAAAGDDINEIAVKLSLSPGTVRNYLATTVRKMDARNRLDAVRIASMSGW 201 Query: 234 I 234 I Sbjct: 202 I 202 >gi|30265375|ref|NP_847752.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47778416|ref|YP_022268.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49188186|ref|YP_031439.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165871303|ref|ZP_02215952.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635735|ref|ZP_02394045.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170688151|ref|ZP_02879362.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708082|ref|ZP_02898530.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651949|ref|ZP_02934532.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190569108|ref|ZP_03022007.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227818115|ref|YP_002818124.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229603443|ref|YP_002869565.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687206|ref|ZP_05151064.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724707|ref|ZP_05186490.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254742263|ref|ZP_05199950.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755822|ref|ZP_05207854.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254762162|ref|ZP_05214008.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30260053|gb|AAP29238.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47552121|gb|AAT34743.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49182113|gb|AAT57489.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712970|gb|EDR18498.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167528844|gb|EDR91601.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170127055|gb|EDS95934.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667844|gb|EDT18596.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082653|gb|EDT67717.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190559776|gb|EDV13762.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227003949|gb|ACP13692.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229267851|gb|ACQ49488.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 200 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|222098824|ref|YP_002532882.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229142095|ref|ZP_04270620.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|221242883|gb|ACM15593.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228641384|gb|EEK97690.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 189 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTTNEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|206970462|ref|ZP_03231415.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206735039|gb|EDZ52208.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 200 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTANEIAKTLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|118480385|ref|YP_897536.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196045516|ref|ZP_03112747.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|118419610|gb|ABK88029.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196023723|gb|EDX62399.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 200 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|167645327|ref|YP_001682990.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167347757|gb|ABZ70492.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 257 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 1/87 (1%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 E HGA ++++ + + R LT+RE CL+ A G T +IA+ +G++ TV Sbjct: 159 ELHGAALRLVSAYRDGCDDDVPPVR-LTKREIQCLKWAAAGKTDADIAQIIGIAGPTVRF 217 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ +A +KL R QA+ +A GYI Sbjct: 218 HVQNAALKLRVAGRAQAVHRATGLGYI 244 >gi|229065002|ref|ZP_04200300.1| Two-component response regulator [Bacillus cereus AH603] gi|228716303|gb|EEL68015.1| Two-component response regulator [Bacillus cereus AH603] Length = 189 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|229187578|ref|ZP_04314718.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228595945|gb|EEK53625.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 189 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|167640433|ref|ZP_02398697.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|254735503|ref|ZP_05193211.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|167511653|gb|EDR87035.1| DNA-binding response regulator [Bacillus anthracis str. A0193] Length = 200 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|206975821|ref|ZP_03236732.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962842|ref|YP_002341420.1| DNA-binding response regulator [Bacillus cereus AH187] gi|206745915|gb|EDZ57311.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217067023|gb|ACJ81273.1| DNA-binding response regulator [Bacillus cereus AH187] Length = 200 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTTNEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|239945707|ref|ZP_04697644.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239992177|ref|ZP_04712841.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291449166|ref|ZP_06588556.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291352113|gb|EFE79017.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 232 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I +FL+ K AR +TERE L+L +G++S+EIAE L +SV TV + Sbjct: 146 GAVTALIRNFLDRAKDGEDLPARAITEREEEILKLVAEGHSSKEIAELLVISVKTVERHR 205 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G I Sbjct: 206 ANLLQKLGLRDRLELTRYAIRAGLI 230 >gi|228988578|ref|ZP_04148665.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771195|gb|EEM19674.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 189 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|218900478|ref|YP_002448889.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543280|gb|ACK95674.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 200 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|65317330|ref|ZP_00390289.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] Length = 200 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|75909280|ref|YP_323576.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703005|gb|ABA22681.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 209 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 4/81 (4%) Query: 159 DFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 D LE F R A N LT RE LQ+ G G ++ IA+ L +S HTV ++ S Sbjct: 128 DVLEFFSVREKAVTNPVQSLTPREIEVLQMLGSGLGNKAIAQSLHISDHTVKFHVSSIFQ 187 Query: 215 KLDAVNRIQAIAKAIRFGYIC 235 KL R +A+ +R G I Sbjct: 188 KLAVSTRTEAVTVGVRLGLIL 208 >gi|228968483|ref|ZP_04129471.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228791189|gb|EEM38803.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 189 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|229076566|ref|ZP_04209526.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|229099785|ref|ZP_04230710.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229105944|ref|ZP_04236568.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229118847|ref|ZP_04248196.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228664648|gb|EEL20141.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228677518|gb|EEL31771.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228683674|gb|EEL37627.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228706599|gb|EEL58812.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 189 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKTLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|324329302|gb|ADY24562.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 200 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|228936636|ref|ZP_04099430.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823071|gb|EEM68909.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 189 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|228961616|ref|ZP_04123225.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798098|gb|EEM45102.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 189 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|42784527|ref|NP_981774.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42740459|gb|AAS44382.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 200 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|228903831|ref|ZP_04067946.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228855740|gb|EEN00285.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 189 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|229199478|ref|ZP_04326139.1| Two-component response regulator [Bacillus cereus m1293] gi|228583883|gb|EEK42040.1| Two-component response regulator [Bacillus cereus m1293] Length = 189 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|37223223|gb|AAQ90210.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 71/153 (46%), Gaps = 6/153 (3%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + NS PI W + V + S + + L G +FP+ + G + Sbjct: 81 DPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKSSGL-ITGFSFPIHTANNGFGMLS 139 Query: 134 FT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDG 188 F SE + + + A ++ ++ ++K + + +LT+RE CL A +G Sbjct: 140 FAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACEG 199 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +S +I++ LG S TV +L +A +KL+ NR Sbjct: 200 KSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232 >gi|228949073|ref|ZP_04111345.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810646|gb|EEM56995.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 189 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|228917960|ref|ZP_04081496.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841757|gb|EEM86868.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 189 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|254384074|ref|ZP_04999419.1| luxR family two component system response regulator [Streptomyces sp. Mg1] gi|194342964|gb|EDX23930.1| luxR family two component system response regulator [Streptomyces sp. Mg1] Length = 203 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LAGDG EIAE+ LS TV YL SA KL A NR A+ A G+ Sbjct: 143 LTAREAEVLELAGDGAPIAEIAERASLSQGTVRNYLSSAASKLGAENRHTAVRLARERGW 202 Query: 234 I 234 + Sbjct: 203 V 203 >gi|218231458|ref|YP_002370129.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218159415|gb|ACK59407.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 200 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|153809558|ref|ZP_01962226.1| hypothetical protein BACCAC_03876 [Bacteroides caccae ATCC 43185] gi|149127803|gb|EDM19027.1| hypothetical protein BACCAC_03876 [Bacteroides caccae ATCC 43185] Length = 254 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 39/63 (61%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + LT+RE L L G+ S+EIA KL LS++TVN + + KL+ N I+AI +A Sbjct: 189 ADQQLTKREKEILLLIRQGFLSKEIASKLNLSIYTVNNHRKNILAKLNVDNVIEAINRAE 248 Query: 230 RFG 232 FG Sbjct: 249 SFG 251 >gi|328886268|emb|CCA59507.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 203 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A +VI L L SS + LT RET L+LA +G EIA +L LS+ TV YL Sbjct: 120 AAGRRVINSQLALSAWNSSQS-PLTTRETEVLRLAAEGLEPIEIAGRLRLSLGTVRNYLT 178 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S KL+A NR+ AI A+ ++ Sbjct: 179 SVVTKLNARNRVDAIKIAMDADWL 202 >gi|229033988|ref|ZP_04188939.1| Two-component response regulator [Bacillus cereus AH1271] gi|228728327|gb|EEL79352.1| Two-component response regulator [Bacillus cereus AH1271] Length = 189 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|148359909|ref|YP_001251116.1| transcriptional regulator [Legionella pneumophila str. Corby] gi|148281682|gb|ABQ55770.1| transcription regulator protein, response regulator containing CheY-like receiver domain and HTH DNA-binding domain [Legionella pneumophila str. Corby] Length = 267 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE CL L G T ++I+E L LS TVN + S K+ VN +A++KA R G Sbjct: 206 LTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFRLG 264 >gi|49480425|ref|YP_039344.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196036499|ref|ZP_03103894.1| DNA-binding response regulator [Bacillus cereus W] gi|218906530|ref|YP_002454364.1| DNA-binding response regulator [Bacillus cereus AH820] gi|300117868|ref|ZP_07055635.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|301056821|ref|YP_003795032.1| DNA-binding response regulator [Bacillus anthracis CI] gi|49331981|gb|AAT62627.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195990832|gb|EDX54805.1| DNA-binding response regulator [Bacillus cereus W] gi|218538999|gb|ACK91397.1| DNA-binding response regulator [Bacillus cereus AH820] gi|298724732|gb|EFI65407.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|300378990|gb|ADK07894.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 200 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|326439852|ref|ZP_08214586.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 202 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L++A DG + EIA +L LSV TV YL + KL+A NR+ AI A G+ Sbjct: 141 LTPREVEVLRMAADGAEAAEIAVRLFLSVGTVRNYLTTIVTKLNARNRVDAIRVARESGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|296505776|ref|YP_003667476.1| two-component response regulator YocG [Bacillus thuringiensis BMB171] gi|296326828|gb|ADH09756.1| two-component response regulator YocG [Bacillus thuringiensis BMB171] Length = 200 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|294811306|ref|ZP_06769949.1| LuxR response regulator receiver [Streptomyces clavuligerus ATCC 27064] gi|294323905|gb|EFG05548.1| LuxR response regulator receiver [Streptomyces clavuligerus ATCC 27064] Length = 231 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L++A DG + EIA +L LSV TV YL + KL+A NR+ AI A G+ Sbjct: 170 LTPREVEVLRMAADGAEAAEIAVRLFLSVGTVRNYLTTIVTKLNARNRVDAIRVARESGW 229 Query: 234 I 234 + Sbjct: 230 L 230 >gi|34452032|gb|AAQ72483.1| DNA binding response regulator [Bacillus cereus] Length = 200 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|254496211|ref|ZP_05109106.1| lipolytic enzyme / transcription regulator protein [Legionella drancourtii LLAP12] gi|254354603|gb|EET13243.1| lipolytic enzyme / transcription regulator protein [Legionella drancourtii LLAP12] Length = 505 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE CL + G T ++I+E L LS TVN + S K++ VN +A++KA R G Sbjct: 444 LTPRELQCLSMISKGMTIKKISEYLHLSSETVNTHAKSIRTKMNCVNITEAVSKAFRLGL 503 Query: 234 I 234 + Sbjct: 504 L 504 >gi|229082566|ref|ZP_04215029.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228700998|gb|EEL53521.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 189 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|229164302|ref|ZP_04292233.1| Two-component response regulator [Bacillus cereus R309803] gi|228619145|gb|EEK76040.1| Two-component response regulator [Bacillus cereus R309803] Length = 189 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|227823797|ref|YP_002827770.1| putative transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] gi|227342799|gb|ACP27017.1| putative transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] Length = 246 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T RE L DG TS +I + L +S HTV+ Y+ KL A NR A+A A R G Sbjct: 184 QMTRREMEALNYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHAVAIAFRLG 243 Query: 233 YIC 235 I Sbjct: 244 LIS 246 >gi|52081161|ref|YP_079952.1| two-component response regulator responsible for cold induction of the des gene [Bacillus licheniformis ATCC 14580] gi|52786544|ref|YP_092373.1| YocG [Bacillus licheniformis ATCC 14580] gi|52004372|gb|AAU24314.1| two-component response regulator responsible for cold induction of the des gene [Bacillus licheniformis ATCC 14580] gi|52349046|gb|AAU41680.1| YocG [Bacillus licheniformis ATCC 14580] Length = 199 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 41/72 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S A LT+RE L+L DG ++EIA++L + TV Y+ KL+ NR Sbjct: 126 ELMEDMYSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|54298259|ref|YP_124628.1| hypothetical protein lpp2317 [Legionella pneumophila str. Paris] gi|53752044|emb|CAH13470.1| hypothetical protein lpp2317 [Legionella pneumophila str. Paris] Length = 267 Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE CL L G T ++I+E L LS TVN + S K+ VN +A++KA R G Sbjct: 206 LTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFRLG 264 >gi|229072819|ref|ZP_04206018.1| Two-component response regulator [Bacillus cereus F65185] gi|228710310|gb|EEL62285.1| Two-component response regulator [Bacillus cereus F65185] Length = 189 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|2495423|sp|Q51786|PHZR_PSEFL RecName: Full=Transcriptional activator protein phzR gi|1050313|gb|AAC18899.1| shows homology to luxR family; putative [Pseudomonas fluorescens] Length = 244 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +ERE L+ DG TSEEI +G+ TVN + + K+ A NR+QA++ A+ GY Sbjct: 184 FSERECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVALGY 243 Query: 234 I 234 I Sbjct: 244 I 244 >gi|47569776|ref|ZP_00240448.1| two-component response regulator yocG [Bacillus cereus G9241] gi|47553572|gb|EAL11951.1| two-component response regulator yocG [Bacillus cereus G9241] Length = 189 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|149914298|ref|ZP_01902829.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] gi|149811817|gb|EDM71650.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] Length = 223 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +++E + R+ A LT RE LQLA DG T++EIA++LG++ V + + KL A Sbjct: 151 NWVEPARPRNEA---LTHREKRILQLASDGGTNKEIAQELGITESQVKMVMRTLCAKLQA 207 Query: 219 VNRIQAIAKAIRFGYI 234 NR A+ +A R I Sbjct: 208 KNRTHAVVRANRLDLI 223 >gi|144900185|emb|CAM77049.1| regulatory protein, LuxR:Autoinducer-binding [Magnetospirillum gryphiswaldense MSR-1] Length = 242 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 39/66 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA +LT RE CL + G +S +I L +S +TVN +L +A KL A R+ AI KA Sbjct: 175 SAPVSLTARERECLIWSARGKSSWDIGVILNISDNTVNFHLKNAMGKLKASTRVLAIVKA 234 Query: 229 IRFGYI 234 IR G I Sbjct: 235 IRMGLI 240 >gi|229112766|ref|ZP_04242298.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229153515|ref|ZP_04281693.1| Two-component response regulator [Bacillus cereus m1550] gi|228630119|gb|EEK86770.1| Two-component response regulator [Bacillus cereus m1550] gi|228670600|gb|EEL25912.1| Two-component response regulator [Bacillus cereus Rock1-15] Length = 189 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|229176028|ref|ZP_04303523.1| Two-component response regulator [Bacillus cereus MM3] gi|228607460|gb|EEK64787.1| Two-component response regulator [Bacillus cereus MM3] Length = 189 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|319644871|ref|ZP_07999104.1| sensor regulator [Bacillus sp. BT1B_CT2] gi|317392680|gb|EFV73474.1| sensor regulator [Bacillus sp. BT1B_CT2] Length = 199 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 41/72 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S A LT+RE L+L DG ++EIA++L + TV Y+ KL+ NR Sbjct: 126 ELMEDMYSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|228955601|ref|ZP_04117601.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229193605|ref|ZP_04320549.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228589910|gb|EEK47785.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228804077|gb|EEM50696.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 189 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|228924099|ref|ZP_04087375.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835589|gb|EEM80954.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 189 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|307610791|emb|CBX00405.1| hypothetical protein LPW_21241 [Legionella pneumophila 130b] Length = 267 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE CL L G T ++I+E L LS TVN + S K+ VN +A++KA R G Sbjct: 206 LTPRELQCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFRLG 264 >gi|228994069|ref|ZP_04153970.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228765717|gb|EEM14370.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 189 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KL+A NRI+AIA A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKTLYLSSGTVRNYISDVLTKLNAKNRIEAIAIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|229051023|ref|ZP_04194571.1| Two-component response regulator [Bacillus cereus AH676] gi|229147892|ref|ZP_04276233.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228635542|gb|EEK92031.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228722332|gb|EEL73729.1| Two-component response regulator [Bacillus cereus AH676] Length = 189 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|229000138|ref|ZP_04159708.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229007659|ref|ZP_04165252.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228753610|gb|EEM03055.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228759675|gb|EEM08651.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 189 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KL+A NRI+AIA A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKTLYLSSGTVRNYISDVLTKLNAKNRIEAIAIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|319795895|ref|YP_004157535.1| ATP-dependent transcriptional regulator malt-like, luxr family [Variovorax paradoxus EPS] gi|315598358|gb|ADU39424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Variovorax paradoxus EPS] Length = 914 Score = 50.8 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E LQL +GY++ +AEKL +S TV +L + +KLDA +R QA+A A + G Sbjct: 853 LTRKEIRVLQLLAEGYSNNAMAEKLFVSDSTVRTHLRNINMKLDAKSRTQAVAIARKVGV 912 Query: 234 I 234 I Sbjct: 913 I 913 >gi|239942882|ref|ZP_04694819.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989342|ref|ZP_04710006.1| two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 216 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 A VI +L + +A R LT+RE L L G G ++ EIA +L LS TV ++ Sbjct: 128 AVGPVIEGYLAAGRDSGAADRTGALTDREGQVLALVGAGLSNREIARELRLSHGTVKDHV 187 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 S KL VNR+QA A R G I Sbjct: 188 SSVLAKLGGVNRVQAAVLADRAGLI 212 >gi|262203966|ref|YP_003275174.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087313|gb|ACY23281.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 230 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 37/59 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET ++L DG ++EEIA++ +S TV ++ A KLDA +R Q + A R G Sbjct: 163 LTERETEVVRLVADGLSNEEIAQRWVVSNATVRTHVSRAMTKLDARDRAQLVVFAYRLG 221 >gi|291446355|ref|ZP_06585745.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349302|gb|EFE76206.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/85 (40%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 A VI +L + +A R LT+RE L L G G ++ EIA +L LS TV ++ Sbjct: 137 AVGPVIEGYLAAGRDSGAADRTGALTDREGQVLALVGAGLSNREIARELRLSHGTVKDHV 196 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 S KL VNR+QA A R G I Sbjct: 197 SSVLAKLGGVNRVQAAVLADRAGLI 221 >gi|239980938|ref|ZP_04703462.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291452801|ref|ZP_06592191.1| luxR family two component system response regulator [Streptomyces albus J1074] gi|291355750|gb|EFE82652.1| luxR family two component system response regulator [Streptomyces albus J1074] Length = 221 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA DG EIAE+ LS TV YL SA KL A NR A+ A G+ Sbjct: 161 LTAREAEVLELAADGAPVAEIAERAALSPGTVRNYLSSAVTKLGAENRHSAVRLARERGW 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|296446398|ref|ZP_06888342.1| two component transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] gi|296256033|gb|EFH03116.1| two component transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] Length = 283 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 45/75 (60%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A ++ F+++ K RS NLT RE S L G G+T+ ++A+ G+S++T+ +L + Sbjct: 175 AAGDMVFPFVDIRKMRSDPLENLTLRERSLLSALGSGHTNNQLAKDFGVSINTIKFHLRN 234 Query: 212 ATVKLDAVNRIQAIA 226 KL+ NR QAI+ Sbjct: 235 LFEKLEVRNRAQAIS 249 >gi|294630195|ref|ZP_06708755.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292833528|gb|EFF91877.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 207 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA DG EIAE+ LS TV YL SA KL A NR A+ A G+ Sbjct: 147 LTAREAEVLELAADGAPVTEIAERAALSAGTVRNYLSSAVTKLGAENRHAAVRLARERGW 206 Query: 234 I 234 + Sbjct: 207 V 207 >gi|217419193|ref|ZP_03450700.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226200253|ref|ZP_03795798.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|217398497|gb|EEC38512.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225927761|gb|EEH23803.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] Length = 236 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RET L+ DG T+ EIA L +S TVN ++ + KL + N+IQA+AKA G Sbjct: 175 DLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMG 234 Query: 233 YI 234 + Sbjct: 235 ML 236 >gi|114764851|ref|ZP_01444033.1| autoinducer-binding transcriptional regulator LuxR [Pelagibaca bermudensis HTCC2601] gi|114542737|gb|EAU45760.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. HTCC2601] Length = 223 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 5/104 (4%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYT 190 +++S E+I+ AHG + LEL +S A L+ RE ++L G + Sbjct: 122 ALWSSFIAQWRAELILAAHG----INAKALELMPGPASQAPVALSPRELDAMRLLASGLS 177 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++A +L +S HTV Y+ A KL A+N A+A+A+ G I Sbjct: 178 RAQVAAELNISEHTVRVYIEGARFKLGALNTTHAVARAMSCGLI 221 >gi|126458323|ref|YP_001075604.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 1106a] gi|134283391|ref|ZP_01770091.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|167723653|ref|ZP_02406889.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei DM98] gi|167819785|ref|ZP_02451465.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167849631|ref|ZP_02475139.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167898230|ref|ZP_02485632.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167906588|ref|ZP_02493793.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|237510070|ref|ZP_04522785.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242312988|ref|ZP_04812005.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254190270|ref|ZP_04896779.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254193498|ref|ZP_04899932.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|254262913|ref|ZP_04953778.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254300529|ref|ZP_04967975.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|126232091|gb|ABN95504.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|134245140|gb|EBA45234.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|156105358|gb|ABU49178.1| BpsR2 [Burkholderia pseudomallei] gi|157810414|gb|EDO87584.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157937947|gb|EDO93617.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|169650251|gb|EDS82944.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|235002275|gb|EEP51699.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242136227|gb|EES22630.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254213915|gb|EET03300.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 236 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RET L+ DG T+ EIA L +S TVN ++ + KL + N+IQA+AKA G Sbjct: 175 DLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMG 234 Query: 233 YI 234 + Sbjct: 235 ML 236 >gi|319943177|ref|ZP_08017460.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] gi|319743719|gb|EFV96123.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] Length = 236 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 1/74 (1%) Query: 160 FLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 F +L + R +S A +LTERE L+ DG ++++IAE L LS +TV+ ++ ++ KLD Sbjct: 160 FSKLIRARIASNAPSLTERELEVLRWTADGKSAQDIAEILLLSKNTVDFHIRNSINKLDV 219 Query: 219 VNRIQAIAKAIRFG 232 N+ A+ +A+ G Sbjct: 220 PNKTAAVVRAVLLG 233 >gi|167839488|ref|ZP_02466172.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia thailandensis MSMB43] Length = 239 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G T+ EI + LG+S TVN ++ + KL A N++QA+ KAI G Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILGISERTVNFHVNNVLDKLGATNKVQAVVKAIAMGL 235 Query: 234 I 234 + Sbjct: 236 V 236 >gi|149913176|ref|ZP_01901710.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. AzwK-3b] gi|149813582|gb|EDM73408.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. AzwK-3b] Length = 242 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 40/64 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A+ L+ RE + L GY+ ++AE L +S HT+ Y+ SA +KL A+N + A+++AI Sbjct: 176 AQPLSPREVDVITLLAMGYSRAQVAETLMISEHTLRTYVESARLKLGAINTLHAVSRAIT 235 Query: 231 FGYI 234 G I Sbjct: 236 RGLI 239 >gi|296269744|ref|YP_003652376.1| LuxR family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092531|gb|ADG88483.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 228 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL DG +++EIA++L +SVH +G+ +KL+ NR QA A+R G Sbjct: 164 LSAREREALQLLADGLSNKEIAQRLYISVHGAKRLVGNILLKLNCPNRTQAAVIAMRHGL 223 Query: 234 I 234 + Sbjct: 224 V 224 >gi|167615994|ref|ZP_02384629.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] Length = 194 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RET L+ DG T+ EIA L +S TVN ++ + KL + N+IQA+AKA G Sbjct: 133 DLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMG 192 Query: 233 YI 234 + Sbjct: 193 ML 194 >gi|55980999|ref|YP_144296.1| response regulator [Thermus thermophilus HB8] gi|55772412|dbj|BAD70853.1| response regulator [Thermus thermophilus HB8] Length = 192 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 40/61 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G +++EIA L LS TV ++L S KL+A NR++A+++A G+ Sbjct: 131 LTPREEEVLRLLAEGLSTKEIARALRLSPETVRSHLESLYAKLEARNRVEALSRARSLGF 190 Query: 234 I 234 + Sbjct: 191 L 191 >gi|53722204|ref|YP_111189.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|76817623|ref|YP_335301.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei 1710b] gi|126444655|ref|YP_001062648.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 668] gi|52212618|emb|CAH38644.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|76582096|gb|ABA51570.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei 1710b] gi|126224146|gb|ABN87651.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] Length = 234 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RET L+ DG T+ EIA L +S TVN ++ + KL + N+IQA+AKA G Sbjct: 173 DLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMG 232 Query: 233 YI 234 + Sbjct: 233 ML 234 >gi|46198976|ref|YP_004643.1| two-component response regulator [Thermus thermophilus HB27] gi|46196600|gb|AAS81016.1| two-component response regulator [Thermus thermophilus HB27] Length = 192 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 40/61 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G +++EIA L LS TV ++L S KL+A NR++A+++A G+ Sbjct: 131 LTPREEEVLRLLAEGLSTKEIARALRLSPETVRSHLESLYAKLEARNRVEALSRARSLGF 190 Query: 234 I 234 + Sbjct: 191 L 191 >gi|15613144|ref|NP_241447.1| two-component response regulator [Bacillus halodurans C-125] gi|10173195|dbj|BAB04300.1| two-component response regulator [Bacillus halodurans C-125] Length = 201 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 60/133 (45%), Gaps = 27/133 (20%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHK--NGYVIFTSEFLMLANEVIIEAHGACYQVITDFL 161 + +++EG LL I F V HK NG + + + M Sbjct: 94 MDLKVEGYLLKDEPIEFLVE-AIHKVMNGERVLSPDLAM--------------------- 131 Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LF K + LTERE L+L G T+E+IA L L+ TV Y+ +A KL+ NR Sbjct: 132 HLFLKEENP---LTEREQEVLRLTKGGKTTEQIATVLYLTNGTVRNYISTAIQKLEVENR 188 Query: 222 IQAIAKAIRFGYI 234 QAI KA G+I Sbjct: 189 HQAIQKAEEKGWI 201 >gi|83716885|ref|YP_439427.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|257142551|ref|ZP_05590813.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650710|gb|ABC34774.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 234 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RET L+ DG T+ EIA L +S TVN ++ + KL + N+IQA+AKA G Sbjct: 173 DLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMG 232 Query: 233 YI 234 + Sbjct: 233 ML 234 >gi|16078980|ref|NP_389801.1| two-component response regulator DesK [Bacillus subtilis subsp. subtilis str. 168] gi|221309818|ref|ZP_03591665.1| hypothetical protein Bsubs1_10596 [Bacillus subtilis subsp. subtilis str. 168] gi|221314140|ref|ZP_03595945.1| hypothetical protein BsubsN3_10527 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319062|ref|ZP_03600356.1| hypothetical protein BsubsJ_10443 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323336|ref|ZP_03604630.1| hypothetical protein BsubsS_10562 [Bacillus subtilis subsp. subtilis str. SMY] gi|321311560|ref|YP_004203847.1| two-component response regulator DesK [Bacillus subtilis BSn5] gi|81815765|sp|O34723|DESR_BACSU RecName: Full=Transcriptional regulatory protein desR gi|2619014|gb|AAB84438.1| sensor regulator [Bacillus subtilis] gi|2634313|emb|CAB13812.1| two-component response regulator [DesK] [Bacillus subtilis subsp. subtilis str. 168] gi|291484510|dbj|BAI85585.1| hypothetical protein BSNT_03128 [Bacillus subtilis subsp. natto BEST195] gi|320017834|gb|ADV92820.1| two-component response regulator (DesK) [Bacillus subtilis BSn5] Length = 199 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 41/72 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S A LT+RE L+L DG ++EIA++L + TV Y+ KL+ NR Sbjct: 126 ELMEDLYSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|37223217|gb|AAQ90206.1| LuxR [Aliivibrio fischeri] Length = 233 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 8/154 (5%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE-GGLLPFAGIAFPVRLGFHKNGYV 132 D + + NS PI W + V + S + + GL+ G +FP+ + G + Sbjct: 81 DPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLI--TGFSFPIHTANNGFGML 138 Query: 133 IFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGD 187 F SE + + + A ++ ++ ++K + + +LT+RE CL A + Sbjct: 139 SFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACE 198 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 G +S +I++ LG S TV +L +A +KL+ NR Sbjct: 199 GKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232 >gi|284993187|ref|YP_003411742.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066433|gb|ADB77371.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 201 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA G EEIA + LS TV +L +A VKL A NR A+ A R G+ Sbjct: 141 LTPREADVLELAAGGAPVEEIAARAHLSPGTVRNHLSAAAVKLGAPNRHAAVEAARRHGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|167577870|ref|ZP_02370744.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] Length = 236 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RET L+ DG T+ EIA L +S TVN ++ + KL + N+IQA+AKA G Sbjct: 175 DLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMG 234 Query: 233 YI 234 + Sbjct: 235 ML 236 >gi|254477011|ref|ZP_05090397.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria sp. R11] gi|214031254|gb|EEB72089.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria sp. R11] Length = 239 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L GY+ ++A+ L +S HT+ Y+ SA KL A+N AIA+A+ G Sbjct: 177 LSPREIDALTLLAMGYSRAQVAQTLSISEHTLRVYIESARFKLGAINTTHAIARALSLGL 236 Query: 234 I 234 I Sbjct: 237 I 237 >gi|196040971|ref|ZP_03108268.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196028139|gb|EDX66749.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 71 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 11 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 70 Query: 234 I 234 I Sbjct: 71 I 71 >gi|120402926|ref|YP_952755.1| regulatory protein LuxR [Mycobacterium vanbaalenii PYR-1] gi|119955744|gb|ABM12749.1| transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 862 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 3/72 (4%) Query: 166 KRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +R+S N LT R+ L+L GDG T+ E+AE+L LSV TV+ ++ + KLD R Sbjct: 790 RRASTLSNPAGLTVRQVEVLRLLGDGLTNAELAERLFLSVKTVDHHVSAILTKLDVTKRR 849 Query: 223 QAIAKAIRFGYI 234 A+ +A G + Sbjct: 850 DAVRRAREVGIL 861 >gi|37223220|gb|AAQ90208.1| LuxR [Aliivibrio fischeri] gi|37223236|gb|AAQ90218.1| LuxR [Aliivibrio fischeri] gi|37223247|gb|AAQ90225.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 8/154 (5%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE-GGLLPFAGIAFPVRLGFHKNGYV 132 D + + NS PI W + V + S + + GL+ G +FP+ + G + Sbjct: 81 DPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLI--TGFSFPIHTANNGFGML 138 Query: 133 IFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGD 187 F SE + + + A ++ ++ ++K + + +LT+RE CL A + Sbjct: 139 SFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACE 198 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 G +S +I++ LG S TV +L +A +KL+ NR Sbjct: 199 GKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232 >gi|167839810|ref|ZP_02466494.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 236 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RET L+ DG T+ EIA L +S TVN ++ + KL + N+IQA+AKA G Sbjct: 175 DLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMG 234 Query: 233 YI 234 + Sbjct: 235 ML 236 >gi|226311198|ref|YP_002771092.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226094146|dbj|BAH42588.1| probable transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 228 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 85 LPIIWQSIQEETVI----ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY--VIFTSEF 138 +P+I Q+I+E+ + E+ +L L G P+A I P+ G + GY + + + Sbjct: 75 MPLIQQAIREQRAVLLDSEAIRELPPHLVYGA-PYALI-LPISYGPNVLGYAGISWHQDG 132 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 N ++++ A ++ L R + L+ RE +Q G + +E+A + Sbjct: 133 CSGINHPLVQSLSAYCSMLGKVLATDSLRPKTVK-LSRREVEVMQRMSWGESVKEMASWM 191 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G+S TV Y+ SA KL NR Q +A AIR IC Sbjct: 192 GISEFTVQDYIKSALKKLGVQNRAQGVADAIRQRIIC 228 >gi|220920955|ref|YP_002496256.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945561|gb|ACL55953.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 70 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 35/58 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 NLT+ E + LQ A +G T EEIA L L V + LGSA KL A +R A+A A+R Sbjct: 8 NLTKPEVAVLQRACNGMTDEEIAADLELDFAQVESMLGSAKEKLKAADRTHAVANALR 65 >gi|15966568|ref|NP_386921.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307300395|ref|ZP_07580175.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318260|ref|ZP_07597695.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15075839|emb|CAC47394.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021] gi|306895942|gb|EFN26693.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306904561|gb|EFN35145.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 260 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 38/58 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE CL+ + +G++++EI+ + SV TV +L +A KL A NR QA+ +A + Sbjct: 192 LTERERECLRYSAEGHSAKEISRIIHRSVPTVVMHLNAAAKKLGAKNRTQAVVRATHY 249 >gi|119717167|ref|YP_924132.1| two component LuxR family transcriptional regulator [Nocardioides sp. JS614] gi|119537828|gb|ABL82445.1| two component transcriptional regulator, LuxR family [Nocardioides sp. JS614] Length = 215 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 50/100 (50%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GY+ T+ L V A G T L KRSS A LT+RE + L+L +G Sbjct: 104 GYLSKTAPGRELVEAVRAVAGGNSVLQPTLMAALLAKRSSPANTLTDRERAVLRLLAEGM 163 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +++IA +LG+S TV + KL +R +A+ +AI Sbjct: 164 HNKQIASRLGISARTVERHCDRIYGKLGVTSRTEAVVRAI 203 >gi|83952460|ref|ZP_00961191.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius nubinhibens ISM] gi|83836133|gb|EAP75431.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius nubinhibens ISM] Length = 251 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 39/67 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A L+ RET + L G + +IA KL +S HT+ +Y+ +A KL AVN A+A+ Sbjct: 182 TPPAPRLSPRETDVITLLARGDSRGQIATKLAISEHTLRSYIETARHKLGAVNTPHAVAR 241 Query: 228 AIRFGYI 234 AI G I Sbjct: 242 AIAMGMI 248 >gi|256838723|ref|ZP_05544233.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739642|gb|EEU52966.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 254 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 39/63 (61%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + LT+RE L L G+ S+EIA KL LS++TVN + + KL+ N I+AI +A Sbjct: 189 ADQQLTKREKEILLLIRQGFLSKEIAYKLNLSIYTVNNHRKNILAKLNVDNVIEAINRAE 248 Query: 230 RFG 232 FG Sbjct: 249 SFG 251 >gi|228911192|ref|ZP_04074997.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228848368|gb|EEM93217.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 189 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 + Sbjct: 189 V 189 >gi|150007891|ref|YP_001302634.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|256840150|ref|ZP_05545659.1| transcriptional regulator [Parabacteroides sp. D13] gi|262381608|ref|ZP_06074746.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|149936315|gb|ABR43012.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|256739080|gb|EEU52405.1| transcriptional regulator [Parabacteroides sp. D13] gi|262296785|gb|EEY84715.1| transcriptional regulator [Bacteroides sp. 2_1_33B] Length = 109 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 38/63 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT+RE L L G+ S+EIA KL LS++TVN + + KL+ N I+AI KA Sbjct: 44 AEPQLTKREKEILILIRQGFLSKEIAYKLNLSIYTVNNHRKNILAKLNVDNAIEAINKAE 103 Query: 230 RFG 232 FG Sbjct: 104 NFG 106 >gi|37223214|gb|AAQ90204.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/141 (23%), Positives = 71/141 (50%), Gaps = 6/141 (4%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT-SEFLMLANE 144 PI W +++++ + S + + L G +FP+ + G + F S+ + + Sbjct: 93 PINWNVFEKKSIKKESPNVIKEAQASGL-ITGFSFPIHTANNGFGMLSFAHSDKDIYTDS 151 Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGL 200 + + A+ ++ ++ ++K ++ + LT+RET CL A +G ++ +I++ LG Sbjct: 152 LFLHANTNVPLMLPSLVDSYQKINTTHKKSDSILTKRETECLAWASEGKSTWDISKILGC 211 Query: 201 SVHTVNAYLGSATVKLDAVNR 221 S TV +L + +KL+ NR Sbjct: 212 SERTVTFHLTNTQMKLNTTNR 232 >gi|94985726|ref|YP_605090.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94556007|gb|ABF45921.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 194 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE+ L L GY+++EIA+ LG+S TV +L KLDA +R +A+++A G Sbjct: 132 RLTPRESEVLPLLAQGYSNKEIAKNLGVSPDTVKDHLARLYAKLDAGDRTEAVSRARSIG 191 Query: 233 YI 234 + Sbjct: 192 LL 193 >gi|56421302|ref|YP_148620.1| hypothetical protein GK2767 [Geobacillus kaustophilus HTA426] gi|56381144|dbj|BAD77052.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 500 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 40/62 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L+L +G ++ E A++L LS +TV Y+ + K++A NR +AI KAIR G Sbjct: 439 HLSPREIEVLKLVAEGASTYEAAKRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAIRDG 498 Query: 233 YI 234 I Sbjct: 499 II 500 >gi|313680133|ref|YP_004057872.1| two component LuxR family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313152848|gb|ADR36699.1| two component transcriptional regulator, LuxR family [Oceanithermus profundus DSM 14977] Length = 196 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G T+ E+ + LGL TV YL KLDA NRI+A+ +A R G Sbjct: 132 SLTPREREVLDLLARGLTAREMGDILGLKPDTVRDYLKRLYGKLDAGNRIEALEQARRLG 191 Query: 233 YI 234 ++ Sbjct: 192 FL 193 >gi|10957401|ref|NP_051615.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6460830|gb|AAF12534.1|AE001826_3 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 209 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L DG +++IAE LG+SV TV ++ +L A +R QA KA+R G Sbjct: 149 LTPRELDILRLIADGLPNKDIAEALGVSVSTVKLHIQDILHRLQAADRTQAAVKALRAGL 208 Query: 234 I 234 + Sbjct: 209 L 209 >gi|326408213|gb|ADZ65278.1| Transcriptional activator, LUXR family [Brucella melitensis M28] gi|326537928|gb|ADZ86143.1| Transcriptional activator protein solR [Brucella melitensis M5-90] Length = 171 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 60/119 (50%), Gaps = 17/119 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RNLT 175 L F ++G + E ML ++ Q++T+ L L +++ A +LT Sbjct: 62 LSFVRSGPALTPGEISMLRRQL---------QMVTNLLHLSMYERVDVPAISCIGDVSLT 112 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 113 LREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 171 >gi|229181601|ref|ZP_04308926.1| Two-component response regulator [Bacillus cereus 172560W] gi|228601797|gb|EEK59293.1| Two-component response regulator [Bacillus cereus 172560W] Length = 189 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVMLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|157693347|ref|YP_001487809.1| response regulator [Bacillus pumilus SAFR-032] gi|157682105|gb|ABV63249.1| response regulator [Bacillus pumilus SAFR-032] Length = 199 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 41/72 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S LTERE S L+L DG ++EIA++L + TV Y+ KL+ NR Sbjct: 126 ELMEDLYSDENPLTEREKSVLELVADGKNTKEIAKELSIKSGTVRNYISIILDKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|262381581|ref|ZP_06074719.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296758|gb|EEY84688.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 254 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 38/63 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + LT+RE L L G+ S+EIA KL LS++TVN + + KL N I+AI +A Sbjct: 189 ADQQLTKREKEILLLIRQGFLSKEIASKLNLSIYTVNNHRKNILAKLKVDNVIEAINRAE 248 Query: 230 RFG 232 FG Sbjct: 249 SFG 251 >gi|159184353|ref|NP_353554.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139669|gb|AAK86339.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 226 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 36/58 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LTERE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R Sbjct: 165 DLTERELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAYAVR 222 >gi|194017154|ref|ZP_03055766.1| response regulator [Bacillus pumilus ATCC 7061] gi|194011022|gb|EDW20592.1| response regulator [Bacillus pumilus ATCC 7061] Length = 199 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 41/72 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S LTERE S L+L DG ++EIA++L + TV Y+ KL+ NR Sbjct: 126 ELMEDLYSDENPLTEREKSVLELVADGKNTKEIAKELSIKSGTVRNYISIILDKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|311068596|ref|YP_003973519.1| two-component response regulator DesK [Bacillus atrophaeus 1942] gi|310869113|gb|ADP32588.1| two-component response regulator (DesK) [Bacillus atrophaeus 1942] Length = 199 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 40/72 (55%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S A LTERE L+L DG ++EIA +L + TV Y+ KL+ NR Sbjct: 126 ELMEDIYSEANPLTEREKEVLELVADGKNTKEIANELSIKSGTVRNYISMILDKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|296268892|ref|YP_003651524.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091679|gb|ADG87631.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 197 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+LA +G T EIA + LS TV YL +A KL A NRI AI A G+ Sbjct: 137 LTQRERDALKLAAEGATVAEIAAAIHLSEGTVRNYLSNAITKLGAGNRITAIRVAREMGW 196 Query: 234 I 234 I Sbjct: 197 I 197 >gi|188586689|ref|YP_001918234.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351376|gb|ACB85646.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 212 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 45/77 (58%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +T + ++ SA NLT RE L+L G G+T++EIA++L + + TV ++ + KL Sbjct: 134 VTKLMMERRENESAYLNLTNREKEVLRLLGKGFTNQEIADELYIGIKTVKTHVSNILDKL 193 Query: 217 DAVNRIQAIAKAIRFGY 233 + +R QA A +GY Sbjct: 194 ELKDRTQAAIYAKDYGY 210 >gi|325124101|gb|ADY83624.1| probable transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Acinetobacter calcoaceticus PHEA-2] Length = 238 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ +G TS EIA+ LG++ TVN +LG++ KL+ N+I A +A+ G Sbjct: 178 LTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLGNSMQKLNVNNKISAAIRAVMLG 236 >gi|296330481|ref|ZP_06872960.1| two-component response regulator (DesK) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674733|ref|YP_003866405.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152378|gb|EFG93248.1| two-component response regulator (DesK) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412977|gb|ADM38096.1| two-component response regulator (paired with DesK) [Bacillus subtilis subsp. spizizenii str. W23] Length = 199 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 41/72 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S A LT+RE L+L DG ++EIA++L + TV Y+ KL+ NR Sbjct: 126 ELMEDIYSEANPLTDREKEVLELVADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|293611186|ref|ZP_06693484.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826437|gb|EFF84804.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 238 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 37/59 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ +G TS EIA+ LG++ TVN +LG++ KL+ N+I A +A+ G Sbjct: 178 LTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLGNSMQKLNVNNKISAAIRAVMLG 236 >gi|167828172|ref|ZP_02459643.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] Length = 210 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RET L+ DG T+ EIA L +S TVN ++ + KL + N+IQA+AKA G Sbjct: 149 DLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMG 208 Query: 233 YI 234 + Sbjct: 209 ML 210 >gi|94972309|ref|YP_594349.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554360|gb|ABF44275.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 209 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 38/69 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + A LT RE L+L DG ++EIA L +SV TV ++ VKL A +R QA Sbjct: 141 RAPDAGAPLTPRELDVLRLIADGLANKEIAAALEISVSTVKLHVQEILVKLQAADRTQAA 200 Query: 226 AKAIRFGYI 234 KA+R G + Sbjct: 201 VKALRAGLL 209 >gi|302549505|ref|ZP_07301847.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467123|gb|EFL30216.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 219 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 65/124 (52%), Gaps = 18/124 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA------------HGACYQVITDFLELFKK-RSSA 170 LG +GYV+ + +A+ ++EA GA ++ DFL+ ++ R+ Sbjct: 99 LGAGASGYVLKS-----VADRDLVEACRATMRGEPFLYPGAVNALVRDFLDRAREGRALP 153 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +R +T+RE L+L +G+TS++IA+ L +S TV + + KL +R++ AIR Sbjct: 154 SRAITDREEEILKLVAEGHTSQQIADLLVISPKTVERHRANLLQKLGLKDRLELTRYAIR 213 Query: 231 FGYI 234 G I Sbjct: 214 VGLI 217 >gi|217976294|ref|YP_002360441.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217501670|gb|ACK49079.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 244 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 40/61 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T+RE L+ + +G + +I+ + +SV TV A+L SA KL A+NR+ A+ KAIR G Sbjct: 183 ITKREIEALEWSAEGKSLADISILMRISVETVKAHLDSARYKLCALNRVHAVTKAIRAGL 242 Query: 234 I 234 I Sbjct: 243 I 243 >gi|134101735|ref|YP_001107396.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914358|emb|CAM04471.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 230 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 11/116 (9%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--- 171 +A +RLG NG+++ ++ +L VI A G ++ L F+ +A Sbjct: 101 VAEALRLG--ANGFLLKDADPAVLVRAVIDLAAGGAVLDPRITARLLPRFRNLGDSADEV 158 Query: 172 ---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R L+ RE L L DG ++ +I ++LGL+ TV +Y+ + KL A NR+QA Sbjct: 159 RLVRTLSARERQVLFLLADGRSNADIGDRLGLTEATVKSYVSTVLGKLGAENRVQA 214 >gi|167742620|ref|ZP_02415394.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167914947|ref|ZP_02502038.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 112] gi|167922782|ref|ZP_02509873.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] Length = 210 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RET L+ DG T+ EIA L +S TVN ++ + KL + N+IQA+AKA G Sbjct: 149 DLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAALMG 208 Query: 233 YI 234 + Sbjct: 209 ML 210 >gi|260431508|ref|ZP_05785479.1| autoinducer-binding transcriptional regulator LuxR [Silicibacter lacuscaerulensis ITI-1157] gi|260415336|gb|EEX08595.1| autoinducer-binding transcriptional regulator LuxR [Silicibacter lacuscaerulensis ITI-1157] Length = 239 Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 38/69 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R + R L+ RE + L GY+ ++A L +S HT+ Y+ SA KL A+N AI Sbjct: 169 RRPDSPRALSPREIDAMTLLALGYSRAQVAHSLSISEHTLRVYIESARAKLGALNTTHAI 228 Query: 226 AKAIRFGYI 234 A A+ G I Sbjct: 229 ATALSRGLI 237 >gi|163738954|ref|ZP_02146367.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter gallaeciensis BS107] gi|163741802|ref|ZP_02149192.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter gallaeciensis 2.10] gi|161384975|gb|EDQ09354.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter gallaeciensis 2.10] gi|161387759|gb|EDQ12115.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter gallaeciensis BS107] Length = 239 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 161 LELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 LE RS + L+ RE L L GY+ ++A+ L +S HT+ Y+ SA KL A+ Sbjct: 163 LEFEPDRSPEHVQPLSPREIDALTLLAMGYSRAQVAKTLTISEHTLRVYIESARFKLGAI 222 Query: 220 NRIQAIAKAIRFGYI 234 N AIA+A+ G I Sbjct: 223 NTTHAIARALSLGLI 237 >gi|90023140|ref|YP_528967.1| LuxR family transcriptional regulator [Saccharophagus degradans 2-40] gi|89952740|gb|ABD82755.1| transcriptional regulator, LuxR family [Saccharophagus degradans 2-40] Length = 247 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 45/82 (54%), Gaps = 5/82 (6%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 CY + + K + +LT RE L A +G T+ EI++ L +S TV +L SA Sbjct: 167 CYSAL-----MLKLAQNKQTHLTAREKESLFWACEGKTTWEISKILDVSERTVIFHLSSA 221 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 T KL AVNR A+AKAI G I Sbjct: 222 TSKLGAVNRQHAVAKAILSGLI 243 >gi|46199289|ref|YP_004956.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55981321|ref|YP_144618.1| response regulator [Thermus thermophilus HB8] gi|46196914|gb|AAS81329.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55772734|dbj|BAD71175.1| response regulator [Thermus thermophilus HB8] Length = 215 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 A EV+++A A + +I DF + L+ERE L+L GYT++EIA +L LS Sbjct: 120 AGEVLLDAELAGH-IIQDFRAKKEASQPLHAELSEREVQILRLVAQGYTNQEIAAELQLS 178 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 TV L KL NR QA AIR G Sbjct: 179 EKTVRNRLSEIFQKLHLNNRTQAALYAIREG 209 >gi|254492498|ref|ZP_05105670.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxidans DMS010] gi|224462390|gb|EEF78667.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxydans DMS010] Length = 215 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L GYTS+EIA+ L LS +TV Y+ + KL N++QA+++A G Sbjct: 155 LSPREKEVLLLVSKGYTSKEIAKMLDLSYYTVREYVSNVYKKLSVKNKMQAVSEATLLGI 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|149923436|ref|ZP_01911840.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] gi|149815688|gb|EDM75215.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] Length = 220 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 39/72 (54%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ A +LT+RE L L G+G +S EIA+ LGLSV T+ + G KL N Sbjct: 146 VKEAPDPADSLTKREREVLTLVGEGKSSPEIAKILGLSVKTIEGHRGRIMAKLGVHNVAG 205 Query: 224 AIAKAIRFGYIC 235 + +AIR G + Sbjct: 206 LVRQAIRIGLVS 217 >gi|325291913|ref|YP_004277777.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325059766|gb|ADY63457.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 251 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 36/58 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LTERE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R Sbjct: 190 DLTERELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAYAVR 247 >gi|94500934|ref|ZP_01307459.1| probable transcriptional regulator [Oceanobacter sp. RED65] gi|94426874|gb|EAT11857.1| probable transcriptional regulator [Oceanobacter sp. RED65] Length = 897 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 38/59 (64%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE + L+L +G +++EIAE+L +S+HTV + KLD +R QAI KA G Sbjct: 837 LSQREMAVLKLIAEGLSNQEIAERLFISLHTVKTHARRINGKLDVKSRTQAILKAKEVG 895 >gi|270307800|ref|YP_003329858.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270153692|gb|ACZ61530.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 232 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQLA G ++ EIA+KL LS+ TV A+L + K+ R +AI K R G Sbjct: 154 QLSPREVEILQLASKGLSNREIADKLTLSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREG 213 Query: 233 YI 234 Y+ Sbjct: 214 YV 215 >gi|126740492|ref|ZP_01756179.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. SK209-2-6] gi|126718293|gb|EBA15008.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. SK209-2-6] Length = 239 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K++ L+ RE L L GY ++A+ L +S HT+ Y+ SA KL A+N A Sbjct: 168 KRKPEHTPPLSPREMDALTLLAIGYNRAQVAKTLSISEHTLRVYIESARFKLGALNTTHA 227 Query: 225 IAKAIRFGYI 234 IA+AI G I Sbjct: 228 IARAISCGLI 237 >gi|152965947|ref|YP_001361731.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151360464|gb|ABS03467.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 230 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 16/122 (13%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKR--SSAA-----------R 172 +G+++ ++ L + + I A G+ +V+ L+LF + ++A R Sbjct: 99 SGFLVKSARPTELVDAIRIVASGSSVVAPRVVRRMLDLFAPQFPTTAGEARDDGLDHRLR 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+ +G ++ EIAE+L LS+ TV ++G+ KL +R+QA+ A FG Sbjct: 159 SLTPRELDVLRCLAEGSSNAEIAERLVLSLTTVKTHVGNILAKLGLRDRVQAVIAAYEFG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|320334192|ref|YP_004170903.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755481|gb|ADV67238.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 211 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RET L+ DG +++EIA LG+SV TV ++ KL A +R A KA+R G Sbjct: 151 LSDRETEVLRRVADGLSNKEIARDLGVSVSTVKVHVQDILTKLSASDRTHAAVKALRAGL 210 Query: 234 I 234 + Sbjct: 211 L 211 >gi|298243907|ref|ZP_06967714.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556961|gb|EFH90825.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 514 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L +G T+ IA +L +S+ TV ++ KL A +R QA+A A+++G Sbjct: 453 ELTEREREVLRLMSEGLTNRAIASRLLISIETVKTHIHHIMQKLQARDRTQAVALAMKYG 512 Query: 233 YI 234 I Sbjct: 513 LI 514 >gi|332710029|ref|ZP_08429984.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332351172|gb|EGJ30757.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 241 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + L+L GYT++EIAE+L L + TV ++ S KL +R QA +A+R G Sbjct: 180 LTERELTVLELIVAGYTNDEIAERLLLGLGTVKTHIRSVLWKLCCDDRTQAAVQALRSGL 239 Query: 234 I 234 + Sbjct: 240 V 240 >gi|291295193|ref|YP_003506591.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470152|gb|ADD27571.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 216 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/89 (40%), Positives = 46/89 (51%), Gaps = 1/89 (1%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 EV+++A A Q+I DF + A L+ERE L+L GYT+ EIA +L LS Sbjct: 122 EVLLDAEMA-EQIIQDFKAKQETTPKAHAELSEREVQILRLVAQGYTNLEIAAELSLSEK 180 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 TV L KL NR QA A+R G Sbjct: 181 TVRNRLSDIFQKLHLNNRTQAALYALREG 209 >gi|223694801|gb|ACN18083.1| two component transcriptional regulator [uncultured bacterium BLR5] Length = 215 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 39/62 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RET LQL +G +++E+ +L +S TV ++ + KL A +R QA++ A+R G Sbjct: 151 NLTSRETEVLQLISEGNSNKEVGNRLSISEETVKGHVKNILGKLGANDRTQAVSIAVRRG 210 Query: 233 YI 234 I Sbjct: 211 II 212 >gi|152966552|ref|YP_001362336.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151361069|gb|ABS04072.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 211 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R+ LT RE L+L DG ++ EIA L LS TV Y+ KLD +R+QA+ Sbjct: 142 QRAQEGSALTPRELQVLRLIADGLSNVEIAATLSLSPETVKTYVSRLLTKLDLRDRVQAV 201 Query: 226 AKAIRFGYI 234 A R G + Sbjct: 202 VYAYRHGLV 210 >gi|291003093|ref|ZP_06561066.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 233 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 11/116 (9%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--- 171 +A +RLG NG+++ ++ +L VI A G ++ L F+ +A Sbjct: 104 VAEALRLG--ANGFLLKDADPAVLVRAVIDLAAGGAVLDPRITARLLPRFRNLGDSADEV 161 Query: 172 ---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R L+ RE L L DG ++ +I ++LGL+ TV +Y+ + KL A NR+QA Sbjct: 162 RLVRTLSARERQVLFLLADGRSNADIGDRLGLTEATVKSYVSTVLGKLGAENRVQA 217 >gi|258652230|ref|YP_003201386.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555455|gb|ACV78397.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 212 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 41/62 (66%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE+ LQL G G ++++ A +LG+SVHTV ++ KL A ++++A+A A R G Sbjct: 139 DLTPRESEVLQLVGAGRSNQQTARELGISVHTVRNHVQHILDKLGAHSQLEAVAIASRLG 198 Query: 233 YI 234 + Sbjct: 199 LL 200 >gi|229158912|ref|ZP_04286969.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228624523|gb|EEK81293.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 189 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIARALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 + Sbjct: 189 V 189 >gi|222106725|ref|YP_002547516.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4] gi|221737904|gb|ACM38800.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4] Length = 307 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + G +S EIA+ LG+S +V Y+ S KL+AVNR QA+ KAI G Sbjct: 226 LSAREKETVIWVSKGKSSWEIAKILGISEKSVEFYMESVKRKLEAVNRTQAVVKAIMLGL 285 Query: 234 I 234 I Sbjct: 286 I 286 >gi|261418220|ref|YP_003251902.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319767820|ref|YP_004133321.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261374677|gb|ACX77420.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317112686|gb|ADU95178.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 500 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 39/62 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L+L +G ++ E A +L LS +TV Y+ + K++A NR +AI KAIR G Sbjct: 439 HLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAIRDG 498 Query: 233 YI 234 I Sbjct: 499 II 500 >gi|163943040|ref|YP_001647924.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865237|gb|ABY46296.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 200 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 + Sbjct: 200 M 200 >gi|146283191|ref|YP_001173344.1| LuxR family DNA-binding response regulator [Pseudomonas stutzeri A1501] gi|145571396|gb|ABP80502.1| DNA-binding response regulator, LuxR family [Pseudomonas stutzeri A1501] gi|327481559|gb|AEA84869.1| LuxR family DNA-binding response regulator [Pseudomonas stutzeri DSM 4166] Length = 215 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 3/72 (4%) Query: 155 QVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++ L +++ SSA + LT RE L LAG G ++ EI EKL LS+HT+ +++ + Sbjct: 130 ELMEALLSRYRQLSSANQVIDELTLREKQILALAGQGLSNAEIGEKLHLSIHTIKSHVHN 189 Query: 212 ATVKLDAVNRIQ 223 A KL A NR Q Sbjct: 190 ALRKLGASNRAQ 201 >gi|163734137|ref|ZP_02141578.1| Transcriptional activator protein RaiR, putative [Roseobacter litoralis Och 149] gi|161392673|gb|EDQ17001.1| Transcriptional activator protein RaiR, putative [Roseobacter litoralis Och 149] Length = 154 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 39/70 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K +++L+ RE + L GY+ ++AE L +S HT+ Y+ SA KL A N A+ Sbjct: 84 KTPEQSQSLSPREVDAMTLLAIGYSRAQVAETLSISEHTLRVYIESARFKLGAANTTHAV 143 Query: 226 AKAIRFGYIC 235 A+A+ G I Sbjct: 144 ARALSRGLIV 153 >gi|297529073|ref|YP_003670348.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297252325|gb|ADI25771.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 500 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 39/62 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L+L +G ++ E A +L LS +TV Y+ + K++A NR +AI KAIR G Sbjct: 439 HLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAIRDG 498 Query: 233 YI 234 I Sbjct: 499 II 500 >gi|218291050|ref|ZP_03495082.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218239004|gb|EED06210.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 506 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 36/58 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE LQL DG ++EI L +S +TV ++ S KL A NR +A+AKA+R Sbjct: 444 TLTKREREILQLIADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEAVAKAMR 501 >gi|86750432|ref|YP_486928.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86573460|gb|ABD08017.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 240 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 4/90 (4%) Query: 149 AHGACYQVIT--DFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 +H Q++ FL K ++ + A LT+RE L +G T EI++ L +S H Sbjct: 150 SHRGMVQLVAMYAFLRSLKLGEKPTPAITLTKREADVLHWIAEGKTDWEISKILRVSEHL 209 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V+ KL AVNRIQA+A A+R G I Sbjct: 210 VDKMARQIRTKLGAVNRIQAVALAMRSGII 239 >gi|258510158|ref|YP_003183592.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476884|gb|ACV57203.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 506 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 36/58 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE LQL DG ++EI L +S +TV ++ S KL A NR +A+AKA+R Sbjct: 444 TLTKREREILQLIADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEAVAKAMR 501 >gi|311103688|ref|YP_003976541.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310758377|gb|ADP13826.1| bacterial regulatory protein, LuxR family protein 2 [Achromobacter xylosoxidans A8] Length = 83 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/65 (44%), Positives = 37/65 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + L+ER+ SCL A G TS E A LG+S TVN +L +A KL R A+ A+ Sbjct: 14 AIKPLSERQASCLHWAALGKTSWETARILGVSESTVNFHLCNACEKLGVRGRRAAVVAAL 73 Query: 230 RFGYI 234 R G I Sbjct: 74 RLGLI 78 >gi|302529657|ref|ZP_07281999.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302438552|gb|EFL10368.1| conserved hypothetical protein [Streptomyces sp. AA4] Length = 276 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G T++EI+++LGL +TV +YL A KL NR+QA+ +A G Sbjct: 213 LTPREIDVLRLVSEGCTNDEISDRLGLLPNTVKSYLKHAMRKLAVSNRVQAVNRARAAGL 272 Query: 234 I 234 + Sbjct: 273 L 273 >gi|150398334|ref|YP_001328801.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150029849|gb|ABR61966.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 246 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 33/68 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S +T RE L DG TS +I + L +S HTV+ Y+ KL A NR +A Sbjct: 179 SRVEVQMTRREMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVAL 238 Query: 228 AIRFGYIC 235 A R G I Sbjct: 239 AFRLGLIS 246 >gi|307150361|ref|YP_003885745.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980589|gb|ADN12470.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 224 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 12/118 (10%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN---------LTE 176 +GY + E+ L + + +HG Y ++ L K S A L+E Sbjct: 107 DGYCLKNIEWEELLVIIRLISHGGVYLDPRIAHKVSHLLKSGSFAVETNTTPKAVTVLSE 166 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G+++++IAE+L LS T+ +Y+ KL +R+QA AKA+R G I Sbjct: 167 RERLILKLIAEGFSNKKIAEQLFLSPGTIKSYVRMLLNKLSVDDRVQAAAKAVREGLI 224 >gi|299069138|emb|CBJ40391.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein (LuxR family) [Ralstonia solanacearum CMR15] Length = 238 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 40/62 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE ++ DG ++++IA+ L +S +TV+ ++ +A KL AVN+ A+ +A G Sbjct: 176 SLTNREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLQAVNKTAAVVRAAMLG 235 Query: 233 YI 234 Y+ Sbjct: 236 YL 237 >gi|17548004|ref|NP_521406.1| transcriptional activator SOLR transcription regulator protein [Ralstonia solanacearum GMI1000] gi|20140008|sp|P58590|SOLR1_RALSO RecName: Full=Transcriptional activator protein solR gi|17430310|emb|CAD17075.1| transcriptional activator solr. transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 236 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 2/67 (2%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SSAA ERE C G+G T+ EI + L +S TVN ++ + +KL A N++QA+ K Sbjct: 172 SSAALTAREREVLCW--TGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVK 229 Query: 228 AIRFGYI 234 AI G I Sbjct: 230 AIAIGLI 236 >gi|306837047|ref|ZP_07469992.1| DNA-binding response regulator [Corynebacterium accolens ATCC 49726] gi|304567075|gb|EFM42695.1| DNA-binding response regulator [Corynebacterium accolens ATCC 49726] Length = 207 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE ++ AG+G + E+IA+++ L+ T YL SA KL A NR +A +A G+ Sbjct: 147 LTEREVEVIEAAGNGGSIEQIAKEVFLATGTTRNYLSSAMTKLGAQNRFEAYLRAQELGW 206 Query: 234 I 234 I Sbjct: 207 I 207 >gi|307302498|ref|ZP_07582255.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307316172|ref|ZP_07595616.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|86278997|gb|ABC88593.1| N-acyl homoserine lactone receptor [Sinorhizobium meliloti] gi|306898012|gb|EFN28754.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306903168|gb|EFN33758.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 246 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 33/68 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S +T RE L DG TS +I + L +S HTV+ Y+ KL A NR +A Sbjct: 179 SRVEVQMTRREMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVAI 238 Query: 228 AIRFGYIC 235 A R G I Sbjct: 239 AFRLGLIS 246 >gi|23501101|ref|NP_697228.1| LuxR family transcriptional regulator [Brucella suis 1330] gi|62289164|ref|YP_220957.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|82699104|ref|YP_413678.1| transcriptional regulator LuxR family protein [Brucella melitensis biovar Abortus 2308] gi|163842459|ref|YP_001626863.1| transcriptional activator protein solR [Brucella suis ATCC 23445] gi|254694980|ref|ZP_05156808.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 3 str. Tulya] gi|254696612|ref|ZP_05158440.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254700994|ref|ZP_05162822.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 5 str. 513] gi|254705366|ref|ZP_05167194.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 3 str. 686] gi|254707120|ref|ZP_05168948.1| Transcriptional activator, LUXR family protein [Brucella pinnipedialis M163/99/10] gi|254709336|ref|ZP_05171147.1| Transcriptional activator, LUXR family protein [Brucella pinnipedialis B2/94] gi|254713241|ref|ZP_05175052.1| Transcriptional activator, LUXR family protein [Brucella ceti M644/93/1] gi|254716405|ref|ZP_05178216.1| Transcriptional activator, LUXR family protein [Brucella ceti M13/05/1] gi|254731525|ref|ZP_05190103.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 4 str. 292] gi|256030859|ref|ZP_05444473.1| Transcriptional activator, LUXR family protein [Brucella pinnipedialis M292/94/1] gi|256045980|ref|ZP_05448852.1| Transcriptional activator, LUXR family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060329|ref|ZP_05450502.1| Transcriptional activator, LUXR family protein [Brucella neotomae 5K33] gi|256112692|ref|ZP_05453613.1| Transcriptional activator, LUXR family protein [Brucella melitensis bv. 3 str. Ether] gi|256158890|ref|ZP_05456740.1| Transcriptional activator, LUXR family protein [Brucella ceti M490/95/1] gi|256254264|ref|ZP_05459800.1| Transcriptional activator, LUXR family protein [Brucella ceti B1/94] gi|256258748|ref|ZP_05464284.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 9 str. C68] gi|260169762|ref|ZP_05756573.1| Transcriptional activator, LUXR family protein [Brucella sp. F5/99] gi|23346971|gb|AAN29143.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella suis 1330] gi|62195296|gb|AAX73596.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella abortus bv. 1 str. 9-941] gi|82615205|emb|CAJ10146.1| Bacterial regulatory protein, LuxR family:Autoinducer binding domain [Brucella melitensis biovar Abortus 2308] gi|163673182|gb|ABY37293.1| Transcriptional activator protein solR [Brucella suis ATCC 23445] Length = 235 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 17/117 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RNLT 175 L F ++G + E ML ++ Q++T+ L L +++ A +LT Sbjct: 126 LSFVRSGPALTPGEISMLRRQL---------QMVTNLLHLSMYERVDVPAISCIGDVSLT 176 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG Sbjct: 177 LREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFG 233 >gi|256368654|ref|YP_003106160.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella microti CCM 4915] gi|255998812|gb|ACU47211.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella microti CCM 4915] Length = 235 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 17/117 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RNLT 175 L F ++G + E ML ++ Q++T+ L L +++ A +LT Sbjct: 126 LSFVRSGPALTPGEISMLRRQL---------QMVTNLLHLSMYERVDVPAISCIGDVSLT 176 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG Sbjct: 177 LREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFG 233 >gi|159898419|ref|YP_001544666.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus ATCC 23779] gi|159891458|gb|ABX04538.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 867 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 12/106 (11%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDG 188 + L LA++ HG +I L F KR + + L+ERE LQ G Sbjct: 764 QQLLQLASD-----HGFNSPLIKHALIEFAKRQPSVQPQTHTLERLSERELEVLQQIATG 818 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T EI E+L LS++TV + + KL+ NR QA+A+A G + Sbjct: 819 LTDREIGERLYLSMYTVKVHARNIYAKLEVSNRTQAVARARTLGLL 864 >gi|302559828|ref|ZP_07312170.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477446|gb|EFL40539.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 200 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA DG EIAE+ LS TV YL SA KL A NR A+ A G+ Sbjct: 140 LTAREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVTKLGAENRHAAVRLARERGW 199 Query: 234 I 234 + Sbjct: 200 V 200 >gi|238027315|ref|YP_002911546.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] gi|237876509|gb|ACR28842.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 234 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RET L+ DG T+ EI+ L +S TVN ++ + KL N+IQA+AKA G Sbjct: 173 NLTSRETDVLKWTADGKTAYEISRILSISESTVNFHVKNIMSKLGTSNKIQAVAKAALTG 232 Query: 233 YI 234 + Sbjct: 233 ML 234 >gi|54026123|ref|YP_120365.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54017631|dbj|BAD59001.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 285 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 3/85 (3%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 HG C ++ L + S A L+ RE L G T++E+A++L L TV +YL Sbjct: 203 HGVCARLTR---MLTGETSPTAPKLSRRELDVLSEVALGCTNQEVAQRLSLGPETVKSYL 259 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 +A KLDA +R +A+ A R G + Sbjct: 260 RNAMTKLDAHSRHEAVVTARRLGLL 284 >gi|317128933|ref|YP_004095215.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315473881|gb|ADU30484.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 708 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 38/69 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K + + L++RE L L GY++ +IA L +S HTV ++ KLD +R QA Sbjct: 636 KSKITEDLKLSKRELDVLDLVLKGYSNSDIANTLFISDHTVKNHMTKILQKLDCTDRSQA 695 Query: 225 IAKAIRFGY 233 IAK + GY Sbjct: 696 IAKVYQMGY 704 >gi|260756046|ref|ZP_05868394.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260676154|gb|EEX62975.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 6 str. 870] Length = 238 Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 17/117 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RNLT 175 L F ++G + E ML ++ Q++T+ L L +++ A +LT Sbjct: 129 LSFVRSGPALTPGEISMLRRQL---------QMVTNLLHLSMYERVDVPAISCIGDVSLT 179 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG Sbjct: 180 LREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFG 236 >gi|326332943|ref|ZP_08199200.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325949301|gb|EGD41384.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 220 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA ++ D+L+ + S R LTERE L+L +G+++ EIA +L +S TV + Sbjct: 134 GAMSALVRDYLDRLNRGESLPRTVLTEREDEVLKLIAEGHSTREIARELTISYKTVERHR 193 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R Q AIR G I Sbjct: 194 ENILAKLGLRDRTQVTRYAIRAGLI 218 >gi|297160246|gb|ADI09958.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 190 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L H +G+++ S L + + A G + + D + + LT RE L Sbjct: 83 LAAHVSGFLLKDSTPDKLCDAIRAVAKG---ERVIDPQLVLAALDDKPQPLTPRELEVLL 139 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G S +IA +L LSV TV YL S KL+A NR+ AI A G++ Sbjct: 140 LASQGEGSAQIAARLYLSVGTVRNYLTSVVTKLNARNRVDAIRIAREAGWL 190 >gi|225851721|ref|YP_002731954.1| transcriptional activator protein solR [Brucella melitensis ATCC 23457] gi|265999658|ref|ZP_06111771.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9] gi|225640086|gb|ACN99999.1| Transcriptional activator protein solR [Brucella melitensis ATCC 23457] gi|263095176|gb|EEZ18845.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9] Length = 238 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 17/117 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RNLT 175 L F ++G + E ML ++ Q++T+ L L +++ A +LT Sbjct: 129 LSFVRSGPALTPGEISMLRRQL---------QMVTNLLHLSMYERVDVPAISCIGDVSLT 179 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG Sbjct: 180 LREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFG 236 >gi|83858980|ref|ZP_00952501.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633] gi|83852427|gb|EAP90280.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633] Length = 200 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 54/105 (51%), Gaps = 4/105 (3%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GYV+ + LA+ V A G + I EL + SA LT RE L+L +G Sbjct: 100 GYVLKDAPSEELADAVRRVAQG--QRAIAS--ELAETAWSAPVVLTARERDILRLVEEGK 155 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++EIA L LS TV YL AT KL A NRI+A A G++ Sbjct: 156 SNKEIARLLNLSPGTVRNYLAEATQKLGAANRIEAFQIARENGWL 200 >gi|326440343|ref|ZP_08215077.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 38/65 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 AR LTERE L+L G T+ EIAE++G+ TV +++ + K A +R QA+ A Sbjct: 159 ARKLTEREADTLRLMAAGLTNGEIAERMGVGPATVKSHVAAVLAKTGARHRTQAVILAYE 218 Query: 231 FGYIC 235 G+I Sbjct: 219 SGFIT 223 >gi|302535729|ref|ZP_07288071.1| luxR family two component system response regulator [Streptomyces sp. C] gi|302444624|gb|EFL16440.1| luxR family two component system response regulator [Streptomyces sp. C] Length = 203 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA DG EIAE+ LS TV YL SA KL A NR A+ A + G+ Sbjct: 143 LTAREAEVLELAADGAPIAEIAERASLSQGTVRNYLSSAATKLGAENRHTAVRLARQRGW 202 Query: 234 I 234 + Sbjct: 203 V 203 >gi|222084851|ref|YP_002543380.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722299|gb|ACM25455.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 245 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 36/58 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LTERE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R Sbjct: 184 DLTERELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVR 241 >gi|302035554|ref|YP_003795876.1| LuxR family transcriptional regulator [Candidatus Nitrospira defluvii] gi|300603618|emb|CBK39949.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 223 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 40/70 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK + +LTERE + L+L DG T++EIA L LS TV ++ + KL +R QA Sbjct: 148 KKPAWVEHDLTEREITVLRLVADGKTNKEIANNLDLSEKTVKNHVRNIFHKLQVYDRTQA 207 Query: 225 IAKAIRFGYI 234 AIR G I Sbjct: 208 AILAIRKGLI 217 >gi|328545557|ref|YP_004305666.1| transcriptional regulator, LuxR family protein [polymorphum gilvum SL003B-26A1] gi|326415298|gb|ADZ72361.1| Putative transcriptional regulator, LuxR family protein [Polymorphum gilvum SL003B-26A1] Length = 96 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 38/57 (66%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTER+ + +++ DG +++IA +L +SV TV ++ +A ++ A NRI A+A IR Sbjct: 35 LTERQKAVMRMLADGLINKQIAHRLDISVATVKTHVAAAVRRMKAKNRIHAVAMLIR 91 >gi|17988041|ref|NP_540675.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1 str. 16M] gi|161618178|ref|YP_001592065.1| transcriptional activator protein solR [Brucella canis ATCC 23365] gi|189023440|ref|YP_001934208.1| LuxR family transcriptional regulator [Brucella abortus S19] gi|225626726|ref|ZP_03784765.1| Transcriptional activator protein solR [Brucella ceti str. Cudo] gi|237814657|ref|ZP_04593655.1| Transcriptional activator protein solR [Brucella abortus str. 2308 A] gi|260546462|ref|ZP_05822202.1| transcriptional activator [Brucella abortus NCTC 8038] gi|260563261|ref|ZP_05833747.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M] gi|260567174|ref|ZP_05837644.1| transcriptional activator [Brucella suis bv. 4 str. 40] gi|260759270|ref|ZP_05871618.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260760992|ref|ZP_05873335.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260885067|ref|ZP_05896681.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261215322|ref|ZP_05929603.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|261218189|ref|ZP_05932470.1| autoinducer-binding domain-containing protein [Brucella ceti M13/05/1] gi|261221416|ref|ZP_05935697.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94] gi|261314598|ref|ZP_05953795.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261316846|ref|ZP_05956043.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261320963|ref|ZP_05960160.1| autoinducer-binding domain-containing protein [Brucella ceti M644/93/1] gi|261324304|ref|ZP_05963501.1| autoinducer-binding domain-containing protein [Brucella neotomae 5K33] gi|261751515|ref|ZP_05995224.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261756080|ref|ZP_05999789.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|261759304|ref|ZP_06003013.1| transcriptional activator [Brucella sp. F5/99] gi|265987917|ref|ZP_06100474.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|265992391|ref|ZP_06104948.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265994134|ref|ZP_06106691.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|265997378|ref|ZP_06109935.1| autoinducer-binding domain-containing protein [Brucella ceti M490/95/1] gi|297247581|ref|ZP_06931299.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|17983788|gb|AAL52939.1| transcriptional activator, luxr family [Brucella melitensis bv. 1 str. 16M] gi|161334989|gb|ABX61294.1| Transcriptional activator protein solR [Brucella canis ATCC 23365] gi|189019012|gb|ACD71734.1| Transcriptional activator, LUXR family [Brucella abortus S19] gi|225618383|gb|EEH15426.1| Transcriptional activator protein solR [Brucella ceti str. Cudo] gi|237789494|gb|EEP63704.1| Transcriptional activator protein solR [Brucella abortus str. 2308 A] gi|260096569|gb|EEW80445.1| transcriptional activator [Brucella abortus NCTC 8038] gi|260153277|gb|EEW88369.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M] gi|260156692|gb|EEW91772.1| transcriptional activator [Brucella suis bv. 4 str. 40] gi|260669588|gb|EEX56528.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260671424|gb|EEX58245.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260874595|gb|EEX81664.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260916929|gb|EEX83790.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260920000|gb|EEX86653.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94] gi|260923278|gb|EEX89846.1| autoinducer-binding domain-containing protein [Brucella ceti M13/05/1] gi|261293653|gb|EEX97149.1| autoinducer-binding domain-containing protein [Brucella ceti M644/93/1] gi|261296069|gb|EEX99565.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261300284|gb|EEY03781.1| autoinducer-binding domain-containing protein [Brucella neotomae 5K33] gi|261303624|gb|EEY07121.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261739288|gb|EEY27284.1| transcriptional activator [Brucella sp. F5/99] gi|261741268|gb|EEY29194.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261745833|gb|EEY33759.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|262551846|gb|EEZ07836.1| autoinducer-binding domain-containing protein [Brucella ceti M490/95/1] gi|262765115|gb|EEZ11036.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263003457|gb|EEZ15750.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|264660114|gb|EEZ30375.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|297174750|gb|EFH34097.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] Length = 238 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 17/117 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RNLT 175 L F ++G + E ML ++ Q++T+ L L +++ A +LT Sbjct: 129 LSFVRSGPALTPGEISMLRRQL---------QMVTNLLHLSMYERVDVPAISCIGDVSLT 179 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG Sbjct: 180 LREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFG 236 >gi|237807075|ref|YP_002891515.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] gi|237499336|gb|ACQ91929.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] Length = 254 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 3/72 (4%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 ++LF S NL+ RE CL +G TS EIA+ LG++ TVN +L +A K N Sbjct: 163 IQLFSPEQS---NLSGREKECLFWVSEGKTSWEIAQILGITERTVNFHLNNAIRKSGCKN 219 Query: 221 RIQAIAKAIRFG 232 R Q +AK I G Sbjct: 220 RYQTVAKNIITG 231 >gi|88800203|ref|ZP_01115771.1| probable two component response regulator transcription regulator protein [Reinekea sp. MED297] gi|88777049|gb|EAR08256.1| probable two component response regulator transcription regulator protein [Reinekea sp. MED297] Length = 217 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 3/78 (3%) Query: 160 FLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L+ F + + + LTER+ L G++S+EIAEKL LS HTV ++ + KL Sbjct: 138 MLQKFHRNTPTPKTPETLTERQVKILTYVSQGFSSKEIAEKLSLSYHTVTTHIKNIYAKL 197 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R +A+ +A + G + Sbjct: 198 QVNSRTEALHEAAKLGIL 215 >gi|240142577|ref|YP_002967090.1| hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens AM1] gi|240012524|gb|ACS43749.1| Hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens AM1] Length = 296 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/72 (45%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L RS+ A L+ RE L A G T+ E A LGLS+ TVN +LG A KL A N+ Sbjct: 225 LGNARSTKA--LSGRERDVLAWAAHGKTAGETALILGLSMETVNHHLGKAQKKLMAANKT 282 Query: 223 QAIAKAIRFGYI 234 A+A AI G I Sbjct: 283 HAVAIAINRGVI 294 >gi|213691342|ref|YP_002321928.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522803|gb|ACJ51550.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457415|dbj|BAJ68036.1| putative two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 245 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 40/79 (50%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 +I DF + KR L+ RE L++ +G +EEIA L LS T+ Y+ A K Sbjct: 167 LIPDFTKASDKRWMNGDRLSAREVEILRMYSEGLETEEIARSLSLSKFTIGTYVKRAVAK 226 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L A NRI AI + G + Sbjct: 227 LHARNRIHAIIMCEKRGLL 245 >gi|302525783|ref|ZP_07278125.1| two-component system response regulator [Streptomyces sp. AA4] gi|302434678|gb|EFL06494.1| two-component system response regulator [Streptomyces sp. AA4] Length = 221 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE LQL DG +++EI E+L LS TV ++L KL +R Q +A A+R Sbjct: 158 RELSAREVEVLQLVADGQSNKEIGEELSLSALTVKSHLSRIGRKLGTGDRAQMVALAMRA 217 Query: 232 GYI 234 G I Sbjct: 218 GVI 220 >gi|72163208|ref|YP_290865.1| regulatory protein LuxR [Thermobifida fusca YX] gi|71916940|gb|AAZ56842.1| regulatory protein, LuxR [Thermobifida fusca YX] Length = 286 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 35/56 (62%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 AA L+ RE L G T++E+AE LGL +TV +YL SA KL A NR+QA+ Sbjct: 221 AAVRLSPREREVLAEVARGCTNDEVAEALGLLPNTVKSYLKSAMRKLGATNRVQAV 276 >gi|37223239|gb|AAQ90220.1| LuxR [Aliivibrio fischeri] gi|37223242|gb|AAQ90222.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/142 (24%), Positives = 72/142 (50%), Gaps = 8/142 (5%) Query: 86 PIIWQSIQEETVI-ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT-SEFLMLAN 143 PI W +++++ ES + E GL+ G +FP+ + G + F S+ + + Sbjct: 93 PINWNVFEKKSIKKESPNVIREAQESGLI--TGFSFPIHTANNGFGMLSFAHSDKDIYTD 150 Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLG 199 + + A +++ ++ ++K ++ + LT+RE CL A +G ++ +I++ LG Sbjct: 151 SLFLHASTNVPLMLSSLVDNYQKINTTHKKSDSILTKREKECLAWASEGKSTWDISKILG 210 Query: 200 LSVHTVNAYLGSATVKLDAVNR 221 S TV +L + +KL+ NR Sbjct: 211 CSERTVTFHLTNTQMKLNTTNR 232 >gi|330502102|ref|YP_004378971.1| regulatory protein LuxR [Pseudomonas mendocina NK-01] gi|328916388|gb|AEB57219.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01] Length = 868 Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ L+ RE + LQL GY+++EIA++L +S+HTV + VKL R QA+A Sbjct: 800 SAGTALLSSRELAVLQLIAQGYSNQEIADRLFISLHTVKTHARRINVKLGVQRRTQAVAM 859 Query: 228 A 228 A Sbjct: 860 A 860 >gi|299065227|emb|CBJ36393.1| Transcriptional activator protein solR [Ralstonia solanacearum CMR15] Length = 236 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 2/67 (2%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SSAA ERE C G+G T+ EI + L +S TVN ++ + +KL A N++QA+ K Sbjct: 172 SSAALTAREREVLCWT--GEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVK 229 Query: 228 AIRFGYI 234 AI G I Sbjct: 230 AIAIGLI 236 >gi|73748274|ref|YP_307513.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|147669054|ref|YP_001213872.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432323|ref|YP_003462196.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT] gi|73659990|emb|CAI82597.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] gi|146270002|gb|ABQ16994.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] gi|288946043|gb|ADC73740.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. GT] Length = 232 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQLA G ++ EIA+KL LS+ TV A+L + K+ R +AI K R G Sbjct: 154 QLSPREIEILQLASKGLSNREIADKLTLSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREG 213 Query: 233 YI 234 Y+ Sbjct: 214 YV 215 >gi|222150544|ref|YP_002559697.1| hypothetical protein MCCL_0294 [Macrococcus caseolyticus JCSC5402] gi|222119666|dbj|BAH17001.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 192 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L E+E + LQL G+G +S+EI+E+L LS TV Y T KL A N+I A A FG+ Sbjct: 127 LNEKEQAILQLIGEGLSSKEISEQLYLSHGTVRNYTSIITEKLGAENKINAWRIASDFGF 186 Query: 234 I 234 I Sbjct: 187 I 187 >gi|306842528|ref|ZP_07475179.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2] gi|306287384|gb|EFM58864.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2] Length = 171 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG Sbjct: 110 SLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFG 169 Query: 233 YI 234 + Sbjct: 170 LL 171 >gi|254690492|ref|ZP_05153746.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 6 str. 870] Length = 235 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 17/117 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RNLT 175 L F ++G + E ML ++ Q++T+ L L +++ A +LT Sbjct: 126 LSFVRSGPALTPGEISMLRRQL---------QMVTNLLHLSMYERVDVPAISCIGDVSLT 176 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG Sbjct: 177 LREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFG 233 >gi|332663404|ref|YP_004446192.1| LuxR family ATP-dependent transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332332218|gb|AEE49319.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 147 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 37/60 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL++RE L L GY+++EIAE L +S++T+ + + +KLD R QA+ KA G Sbjct: 86 NLSKREYEVLTLIAQGYSNQEIAETLFVSLNTIKTHSSNVFLKLDVKRRTQAVQKAKEIG 145 >gi|294851589|ref|ZP_06792262.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|294820178|gb|EFG37177.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026] Length = 238 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 37/60 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG Sbjct: 177 SLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFG 236 >gi|163848961|ref|YP_001637005.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526915|ref|YP_002571386.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670250|gb|ABY36616.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450794|gb|ACM55060.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 209 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 40/73 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S AA LTERE L+L +G T+ EIA +L +S TV ++ S KL +R Sbjct: 137 LEAQTSKAADTLTEREREVLKLVAEGLTNAEIASRLTVSEETVKTHVASILRKLGLAHRT 196 Query: 223 QAIAKAIRFGYIC 235 QA A+R G + Sbjct: 197 QAAIYALRHGLVS 209 >gi|313792636|gb|EFS40722.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313803170|gb|EFS44366.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313829121|gb|EFS66835.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313839557|gb|EFS77271.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314963942|gb|EFT08042.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|315079093|gb|EFT51100.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315081562|gb|EFT53538.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315109751|gb|EFT81727.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327334500|gb|EGE76211.1| DNA-binding response regulator [Propionibacterium acnes HL097PA1] gi|327457479|gb|EGF04134.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] Length = 202 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +RET L+L DG ++ +IA +L LS TV YL +A KLDA +R A+ +A G+ Sbjct: 142 LNDRETEILRLVADGSSTAQIASRLYLSKGTVRNYLSTAMSKLDADSRTAAVTRAREEGW 201 Query: 234 I 234 + Sbjct: 202 L 202 >gi|294811923|ref|ZP_06770566.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324522|gb|EFG06165.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 234 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 38/65 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 AR LTERE L+L G T+ EIAE++G+ TV +++ + K A +R QA+ A Sbjct: 168 ARKLTEREADTLRLMAAGLTNGEIAERMGVGPATVKSHVAAVLAKTGARHRTQAVILAYE 227 Query: 231 FGYIC 235 G+I Sbjct: 228 SGFIT 232 >gi|254718404|ref|ZP_05180215.1| Transcriptional activator, LUXR family protein [Brucella sp. 83/13] gi|306840172|ref|ZP_07472955.1| LuxR family transcriptional regulator [Brucella sp. NF 2653] gi|306844457|ref|ZP_07477047.1| LuxR family transcriptional regulator [Brucella sp. BO1] gi|306275270|gb|EFM57020.1| LuxR family transcriptional regulator [Brucella sp. BO1] gi|306404737|gb|EFM61033.1| LuxR family transcriptional regulator [Brucella sp. NF 2653] Length = 235 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 37/60 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG Sbjct: 174 SLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFG 233 >gi|311695311|gb|ADP98184.1| regulatory protein, LuxR [marine bacterium HP15] Length = 900 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 4/102 (3%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + T F L EA G + + E+ + A ++ERE L+L G +++ Sbjct: 803 LMTKGFGQLPEGAFKEALGEVF----ELREVAGTLDTLAEPISEREQGVLELIAKGLSNQ 858 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+KL +S+HTV + KL+ +R QAI +A G + Sbjct: 859 EIADKLHISLHTVKTHARRINAKLEVKSRTQAIVRARELGLL 900 >gi|114799307|ref|YP_759854.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114739481|gb|ABI77606.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC 15444] Length = 254 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 6/123 (4%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKR--SSAARNL 174 I P+ G V++ ++ + I EA GA Y + FL +K SA + Sbjct: 126 IVAPIHSPMGVIGAVVWATDDEAVDVSGIFEARGAELYMLALKFLSAYKDAVLPSADPEM 185 Query: 175 TE---RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E RE CL+ A G T EIA +G+S T+ ++ +A+ KL R Q I A Sbjct: 186 VEFTRREIQCLKWAAAGKTDSEIATIMGVSAPTIRFHMTNASRKLGVSGRSQTIRLATTL 245 Query: 232 GYI 234 GYI Sbjct: 246 GYI 248 >gi|78049642|ref|YP_365817.1| LuxR family two-component response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038072|emb|CAJ25817.1| two-component system response regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 205 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 40/64 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE + L+LAG+G ++ EIA++L LS TV YL KL NRI+A A + Sbjct: 142 ADPLSERERTVLRLAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQ 201 Query: 231 FGYI 234 G++ Sbjct: 202 KGWL 205 >gi|265983368|ref|ZP_06096103.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13] gi|264661960|gb|EEZ32221.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13] Length = 238 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 37/60 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG Sbjct: 177 SLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFG 236 >gi|57234766|ref|YP_181176.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57225214|gb|AAW40271.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] Length = 232 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQLA G ++ EIA+KL LS+ TV A+L + K+ R +AI K R G Sbjct: 154 QLSPREIEILQLASKGLSNREIADKLELSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREG 213 Query: 233 YI 234 Y+ Sbjct: 214 YV 215 >gi|307151536|ref|YP_003886920.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981764|gb|ADN13645.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 232 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 3/77 (3%) Query: 161 LELFKKRSSA---ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LEL + S+ +LTERE LQL DGY++ IA+KL ++V TV ++ + KL Sbjct: 155 LELLEPESNVRGETYSLTERELEVLQLIVDGYSNAAIADKLFITVGTVKTHVRNILNKLC 214 Query: 218 AVNRIQAIAKAIRFGYI 234 A +R QA +A+R G + Sbjct: 215 ADDRTQAAVRALRAGLV 231 >gi|83588897|ref|YP_428906.1| two component LuxR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83571811|gb|ABC18363.1| two component transcriptional regulator, LuxR family [Moorella thermoacetica ATCC 39073] Length = 221 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 10/116 (8%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKR---SSAAR----NLTERE 178 GYV+ + L + + A G Y Q+ +E ++R + A+R LTERE Sbjct: 101 RGYVLKRAGIEELTTAIRLVARGEAYLDPQIARRVIEGLQERLPFTRASRPEGPELTERE 160 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+LA +G T+ EIA +L +SV TV A+ + KL +R+ + AI+ G + Sbjct: 161 LEVLRLAAEGLTNAEIARRLVISVKTVQAHRANIMQKLGLHDRVDLVKYAIKNGIL 216 >gi|322433940|ref|YP_004216152.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321161667|gb|ADW67372.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 190 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/63 (50%), Positives = 39/63 (61%), Gaps = 2/63 (3%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA--I 225 S+ A LT+RE LQ AG+G +S EIA +L LS TV YL A KL A NR+ A I Sbjct: 124 SAEADPLTDRERQILQRAGEGRSSGEIAGELRLSEGTVRNYLSEAISKLGAANRVDAARI 183 Query: 226 AKA 228 A+A Sbjct: 184 ARA 186 >gi|298244504|ref|ZP_06968310.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551985|gb|EFH85850.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 232 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L G S++IA LG++ TV AYL S KL+ +R AI AIR+G Sbjct: 161 DLTEREREVLIAVARGDRSKDIARHLGIAERTVRAYLTSIYTKLNVTSRASAITVAIRYG 220 Query: 233 YI 234 + Sbjct: 221 IL 222 >gi|15967032|ref|NP_387385.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15076305|emb|CAC47858.1| Putative transcription regulator [Sinorhizobium meliloti 1021] Length = 184 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 32/63 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T RE L DG TS +I + L +S HTV+ Y+ KL A NR +A A R G Sbjct: 122 QMTRREMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVAIAFRLG 181 Query: 233 YIC 235 I Sbjct: 182 LIS 184 >gi|294053956|ref|YP_003547614.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293613289|gb|ADE53444.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 218 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 42/69 (60%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R + + LT+RE L+L G +++EI +L LSV V ++ + KLDAV+R QA+ Sbjct: 144 ERRRSQKGLTDREMEVLKLLASGLSNKEIGSELDLSVAMVKLHIINLREKLDAVDRTQAV 203 Query: 226 AKAIRFGYI 234 +A + G + Sbjct: 204 VQAFKRGIL 212 >gi|294626735|ref|ZP_06705330.1| two-component system response regulator, LuxR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667185|ref|ZP_06732408.1| two-component system response regulator, LuxR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598983|gb|EFF43125.1| two-component system response regulator, LuxR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603084|gb|EFF46512.1| two-component system response regulator, LuxR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 205 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 40/64 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE + L+LAG+G ++ EIA++L LS TV YL KL NRI+A A + Sbjct: 142 ADPLSERERTVLRLAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQ 201 Query: 231 FGYI 234 G++ Sbjct: 202 KGWL 205 >gi|163854702|ref|YP_001629000.1| LuxR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163258430|emb|CAP40729.1| transcriptional regulator, LuxR-family [Bordetella petrii] Length = 71 Score = 49.3 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 38/64 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A+ L+ RE CL + G TS EIA LG+S TVN ++G+A KL NR A+A A+ Sbjct: 3 AKPLSNREHECLHWSAMGKTSWEIAVILGVSERTVNFHIGNACSKLGVYNRRAAVAIALS 62 Query: 231 FGYI 234 G + Sbjct: 63 QGLL 66 >gi|149193353|gb|ABR21211.1| PhzR [Pseudomonas chlororaphis subsp. aureofaciens] Length = 241 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 15/151 (9%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEG--GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 P +W + + Q S +G G+L A P+ L EF L Sbjct: 104 PDLWSEANDSNLRHGLAQPSFNTQGRVGVLSLARKDNPISL-----------QEFEAL-- 150 Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 +V+ +A A LE + + + RE L+ DG TSEEI +G+ Sbjct: 151 KVVTKAFAAAVHEKISELESDVRVFNTDVEFSGRECDVLRWTADGKTSEEIGVIMGVCTD 210 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TVN + + K+ A NR+QA++ A+ GYI Sbjct: 211 TVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241 >gi|302518272|ref|ZP_07270614.1| two component response regulator [Streptomyces sp. SPB78] gi|318062320|ref|ZP_07981041.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079406|ref|ZP_07986738.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|333028052|ref|ZP_08456116.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|302427167|gb|EFK98982.1| two component response regulator [Streptomyces sp. SPB78] gi|332747904|gb|EGJ78345.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 226 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 164 SLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 223 Query: 233 Y 233 Y Sbjct: 224 Y 224 >gi|228942499|ref|ZP_04105035.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975433|ref|ZP_04135988.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982066|ref|ZP_04142358.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228777604|gb|EEM25879.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228784227|gb|EEM32251.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817182|gb|EEM63271.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 189 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 129 LSDREKEVLLLAKEGKTANEIAKVLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 Query: 234 I 234 + Sbjct: 189 M 189 >gi|291302402|ref|YP_003513680.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571622|gb|ADD44587.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 9/115 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR--NLTERET 179 +G+++ +E + L V + A G +++ +F + K+ SA + LTERE Sbjct: 104 SGFLVKDTEPVELLQAVRVVARGDALLSPGVTRRLVAEFAQRAKEPVSAKKLEQLTERER 163 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + LAG G ++EEI KL LS T ++ A +KL A +R Q + A G + Sbjct: 164 EVVALAGTGLSNEEIGAKLFLSPATAKTHISRAMIKLGARDRAQLVVFAYESGLV 218 >gi|291299577|ref|YP_003510855.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568797|gb|ADD41762.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 212 Score = 49.3 bits (116), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L A DG + +IA++L LS TV YL SA K NRI+A+ KA G+ Sbjct: 152 LTDREREVLAAAEDGARATDIAKRLHLSDSTVRNYLSSAISKTGTRNRIEAVKKARELGW 211 Query: 234 I 234 + Sbjct: 212 L 212 >gi|239833383|ref|ZP_04681711.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239821446|gb|EEQ93015.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 233 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RET L+ G G + EIA KLGLS HTV+ Y+ + KL +R +A +AIR G Sbjct: 169 HLSRRETEVLKEIGTGQRNGEIARKLGLSEHTVSDYVKAIYQKLSVSSRAEATREAIRRG 228 Query: 233 YI 234 + Sbjct: 229 LV 230 >gi|120555604|ref|YP_959955.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8] gi|120325453|gb|ABM19768.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8] Length = 891 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 38/64 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +++RE L+L G +++EIA+KL +S+HTV + KLD +R QAI +A Sbjct: 828 AEPISDREQGVLELIAQGLSNQEIADKLHISLHTVKTHARRINAKLDVKSRTQAIVRARE 887 Query: 231 FGYI 234 G + Sbjct: 888 LGLL 891 >gi|21244711|ref|NP_644293.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21110402|gb|AAM38829.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 200 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 40/64 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE + L+LAG+G ++ EIA++L LS TV YL KL NRI+A A + Sbjct: 137 ADPLSERERTVLRLAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQ 196 Query: 231 FGYI 234 G++ Sbjct: 197 KGWL 200 >gi|326943150|gb|AEA19046.1| two-component response regulator YocG [Bacillus thuringiensis serovar chinensis CT-43] Length = 200 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 140 LSDREKEVLLLAKEGKTANEIAKVLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 Query: 234 I 234 + Sbjct: 200 M 200 >gi|325927296|ref|ZP_08188550.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|325542297|gb|EGD13785.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 200 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 40/64 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE + L+LAG+G ++ EIA++L LS TV YL KL NRI+A A + Sbjct: 137 ADPLSERERTVLRLAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQ 196 Query: 231 FGYI 234 G++ Sbjct: 197 KGWL 200 >gi|325294100|ref|YP_004279964.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325061953|gb|ADY65644.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 258 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/128 (33%), Positives = 57/128 (44%), Gaps = 11/128 (8%) Query: 116 AGIAFPV--RLGFHKNGYVIFTSEFLMLAN---EVIIEAHGACYQVITDF----LELFKK 166 G AFPV R GF G V E L + E++ A A + + D L Sbjct: 132 GGYAFPVHGRAGF--IGAVFLGGEDRQLPSLHVELLDAATRAVFWRLLDLSGQVHNLNNA 189 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + +A LT RE L L DG TS EI +L +S HTV+ Y+ + A NR +A Sbjct: 190 PNVSALELTRREMEVLTLMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVA 249 Query: 227 KAIRFGYI 234 A R G + Sbjct: 250 LAFRNGLL 257 >gi|295839668|ref|ZP_06826601.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|197698511|gb|EDY45444.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 239 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 177 SLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 236 Query: 233 Y 233 Y Sbjct: 237 Y 237 >gi|16125035|ref|NP_419599.1| LuxR family transcriptional regulator [Caulobacter crescentus CB15] gi|221233760|ref|YP_002516196.1| hypothetical protein CCNA_00823 [Caulobacter crescentus NA1000] gi|13422023|gb|AAK22767.1| transcriptional regulator, LuxR family, putative [Caulobacter crescentus CB15] gi|220962932|gb|ACL94288.1| hypothetical protein CCNA_00823 [Caulobacter crescentus NA1000] Length = 283 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 33/49 (67%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LTERE CL+L +S+EIA +LGLS HTV+ +L A +L AV+R Sbjct: 33 RLTERERECLRLVDRHMSSKEIARELGLSKHTVDWHLDKARRRLGAVDR 81 >gi|241206852|ref|YP_002977948.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860742|gb|ACS58409.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 251 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L +G TS EI++ L +S HTV+ Y+ KL A NR A+A A R G Sbjct: 190 LTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQHAVALAFRHGL 249 Query: 234 I 234 I Sbjct: 250 I 250 >gi|94500443|ref|ZP_01306975.1| regulatory protein CsgD [Oceanobacter sp. RED65] gi|94427478|gb|EAT12456.1| regulatory protein CsgD [Oceanobacter sp. RED65] Length = 216 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A NLT RE+ L L+ G + +IA L +S HTV ++ + KLD NRIQA+ A Sbjct: 149 AHNLTRRESQILSLSASGAKNADIAAALNVSTHTVKTHMYNLFKKLDVSNRIQAVNWAKE 208 Query: 231 F 231 + Sbjct: 209 Y 209 >gi|126649643|ref|ZP_01721884.1| two-component response regulator [Bacillus sp. B14905] gi|126593968|gb|EAZ87891.1| two-component response regulator [Bacillus sp. B14905] Length = 203 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 38/60 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE+ L L +G T++EIA +L LS TV Y+ + KL+ NRI+AIA+ G+ Sbjct: 142 LTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIARFKEKGW 201 >gi|222149995|ref|YP_002550952.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736977|gb|ACM37940.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 248 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R Sbjct: 188 LTERELECLFWIAEGKTSDEIATILGISRNTINNYITSVMRKTATKTRSEAIAYAVR 244 >gi|74316369|ref|YP_314109.1| LuxR family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74055864|gb|AAZ96304.1| Transcriptional Regulator, LuxR family [Thiobacillus denitrificans ATCC 25259] Length = 258 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE L DG T+EEIA LGLS+ TV +L A KL R QA+A+AI G+ Sbjct: 189 ITAREAEVLAWVRDGKTNEEIAAILGLSMLTVKNHLRHAMQKLVVRTRGQAVARAIALGF 248 Query: 234 I 234 + Sbjct: 249 L 249 >gi|58039805|ref|YP_191769.1| two component response regulator [Gluconobacter oxydans 621H] gi|58002219|gb|AAW61113.1| Two component response regulator [Gluconobacter oxydans 621H] Length = 224 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/51 (52%), Positives = 33/51 (64%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+ERE + L+LA G T+ EIAE+L LS TV Y KLDA NRI+A Sbjct: 141 LSERERAMLRLAEAGRTNREIAEELSLSSGTVRNYFSEIVQKLDARNRIEA 191 >gi|325000860|ref|ZP_08121972.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1] Length = 222 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE LQL DG +++EI E L LS TV ++L KL +R Q +A A+R Sbjct: 159 RELSAREVEVLQLVADGQSNKEIGEALNLSALTVKSHLSRIGRKLGTGDRAQMVALAMRA 218 Query: 232 GYI 234 G I Sbjct: 219 GVI 221 >gi|217976880|ref|YP_002361027.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217502256|gb|ACK49665.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 242 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 39/67 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ A ++T RE LQ +G EIA ++ +S TV A L SA VKL A+NR A AK Sbjct: 172 SADAADVTSREIEALQFMAEGKMIVEIATRMRVSQSTVLALLESARVKLHALNRAHAAAK 231 Query: 228 AIRFGYI 234 A+ G I Sbjct: 232 ALGVGLI 238 >gi|159185350|ref|NP_355660.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159140603|gb|AAK88445.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 245 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 34/66 (51%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +A LT RE L L DG TS EI +L +S HTV+ Y+ + A NR +A A Sbjct: 180 SALELTRREMEVLALMADGMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAF 239 Query: 230 RFGYIC 235 R G + Sbjct: 240 RHGLLS 245 >gi|256375685|ref|YP_003099345.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255919988|gb|ACU35499.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 238 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE LQL DG +++EI E L LS TV ++L KL +R Q +A A+R Sbjct: 175 RELSAREVEVLQLVADGQSNKEIGEALSLSALTVKSHLSRIGRKLGTGDRAQMVALAMRA 234 Query: 232 GYI 234 G I Sbjct: 235 GVI 237 >gi|325914503|ref|ZP_08176847.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325539273|gb|EGD10925.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 200 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 40/64 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE + L+LAG+G ++ EIA++L LS TV YL KL NRI+A A + Sbjct: 137 ADPLSERERTVLRLAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQ 196 Query: 231 FGYI 234 G++ Sbjct: 197 KGWL 200 >gi|299534498|ref|ZP_07047831.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298730126|gb|EFI70668.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 203 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 38/60 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE+ L L +G T++EIA +L LS TV Y+ + KL+ NRI+AIA+ G+ Sbjct: 142 LTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIARFKEKGW 201 >gi|21233332|ref|NP_639249.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770294|ref|YP_245056.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|21115164|gb|AAM43131.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575626|gb|AAY51036.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] Length = 200 Score = 49.3 bits (116), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 40/64 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE + L+LAG+G ++ EIA++L LS TV YL KL NRI+A A + Sbjct: 137 ADPLSERERTVLRLAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQ 196 Query: 231 FGYI 234 G++ Sbjct: 197 KGWL 200 >gi|289669289|ref|ZP_06490364.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 200 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 40/64 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE + L+LAG+G ++ EIA++L LS TV YL KL NRI+A A + Sbjct: 137 ADPLSERERTILRLAGEGRSTSEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQ 196 Query: 231 FGYI 234 G++ Sbjct: 197 KGWL 200 >gi|192360157|ref|YP_001981723.1| putative two-component transcriptional regulator, LuxR family [Cellvibrio japonicus Ueda107] gi|190686322|gb|ACE84000.1| putative two-component transcriptional regulator, LuxR family [Cellvibrio japonicus Ueda107] Length = 238 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 1/94 (1%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L +++ A+ Q T + L +K+ + +LT +E L + GYT +IA KL + Sbjct: 144 LNKDILDAANLMSVQFYTCYWRLMEKKVTLV-HLTAKEQEILTWSAAGYTKSQIAHKLCI 202 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SVHTV+ ++ + KL+A N A+++A+ I Sbjct: 203 SVHTVDFHVRNCLAKLEAQNITHAVSRALNLSLI 236 >gi|157151124|ref|YP_001451003.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075918|gb|ABV10601.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 199 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%) Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +RN L+++E LQ A DG +++EIAEKL LS TV Y+ + KLDA NR +A+ Sbjct: 135 SRNPLSQQERLVLQAAADGLSNKEIAEKLFLSNGTVRNYMSAILTKLDAENRTEAVRIGQ 194 Query: 230 RFGYI 234 G++ Sbjct: 195 EKGWL 199 >gi|229014521|ref|ZP_04171639.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229136171|ref|ZP_04264924.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229170061|ref|ZP_04297752.1| Two-component response regulator [Bacillus cereus AH621] gi|228613408|gb|EEK70542.1| Two-component response regulator [Bacillus cereus AH621] gi|228647330|gb|EEL03412.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228746871|gb|EEL96756.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 189 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KL+A NRI+AI A G+ Sbjct: 129 LSDREKEVLVLAKEGKTTNEIAKMLYLSPGTVRNYISEVLAKLEAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|218260595|ref|ZP_03475826.1| hypothetical protein PRABACTJOHN_01489 [Parabacteroides johnsonii DSM 18315] gi|218224454|gb|EEC97104.1| hypothetical protein PRABACTJOHN_01489 [Parabacteroides johnsonii DSM 18315] Length = 261 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE S LQL G S+EIA L +S++T+N + + +KL A N I+A+ A R G Sbjct: 196 LTNRELSVLQLMKQGLLSKEIANSLNVSINTINTHRQNILLKLKANNSIEAVNIAQRLGL 255 Query: 234 I 234 + Sbjct: 256 L 256 >gi|256377110|ref|YP_003100770.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921413|gb|ACU36924.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 223 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE ++L G T++E+A +L L V TV +LG+A KL A NR++ A A R G Sbjct: 159 LTERELEVVRLVALGRTNDEVAGELHLGVATVKTHLGNAQRKLAARNRVEVAAWAWRTGL 218 Query: 234 I 234 + Sbjct: 219 V 219 >gi|229020573|ref|ZP_04177315.1| Two-component response regulator [Bacillus cereus AH1273] gi|229026791|ref|ZP_04183123.1| Two-component response regulator [Bacillus cereus AH1272] gi|228734514|gb|EEL85176.1| Two-component response regulator [Bacillus cereus AH1272] gi|228740737|gb|EEL90993.1| Two-component response regulator [Bacillus cereus AH1273] Length = 189 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ EIA+ L LS TV Y+ KL+A NRI+AI A G+ Sbjct: 129 LSDREKEVLVLAKEGKTTNEIAKMLYLSPGTVRNYISEVLAKLEAKNRIEAITIAEEKGW 188 Query: 234 I 234 I Sbjct: 189 I 189 >gi|169825786|ref|YP_001695944.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168990274|gb|ACA37814.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 199 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 38/60 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE+ L L +G T++EIA +L LS TV Y+ + KL+ NRI+AIA+ G+ Sbjct: 138 LTERESQVLTLVAEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIARFKEKGW 197 >gi|270294588|ref|ZP_06200790.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270276055|gb|EFA21915.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 261 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE S LQL G S+EIA L +S++T+N + + +KL A N I+A+ A R G Sbjct: 196 LTNRELSVLQLMKQGLLSKEIANSLNVSINTINTHRQNILLKLKANNSIEAVNIAQRLGL 255 Query: 234 I 234 + Sbjct: 256 L 256 >gi|300784547|ref|YP_003764838.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794061|gb|ADJ44436.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 186 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE LQL DG +++EI E+L LS TV ++L KL +R Q +A A+R Sbjct: 123 RELSAREVEVLQLVADGQSNKEIGEELSLSALTVKSHLSRIGRKLGTGDRAQMVALAMRA 182 Query: 232 GYI 234 G I Sbjct: 183 GVI 185 >gi|188993492|ref|YP_001905502.1| Two-component system response regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|167735252|emb|CAP53466.1| Two-component system response regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 200 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 40/64 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE + L+LAG+G ++ EIA++L LS TV YL KL NRI+A A + Sbjct: 137 ADPLSERERTVLRLAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQ 196 Query: 231 FGYI 234 G++ Sbjct: 197 KGWL 200 >gi|17228408|ref|NP_484956.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130259|dbj|BAB72870.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 225 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 5/111 (4%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR--NLTERETSCLQ 183 + Y I + L N + GA Y Q+ ++ K S+ NL+ RE L+ Sbjct: 115 DAYCIKGASIERLLNAIAAAVDGATYLDPQIARQVIDHLKPPSAKGNTANLSGRELEVLK 174 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G ++ EIAEKL LS +TV ++ KL +R+QA A+R G + Sbjct: 175 LMVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVALRSGLV 225 >gi|282861577|ref|ZP_06270641.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563393|gb|EFB68931.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 190 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/114 (34%), Positives = 58/114 (50%), Gaps = 9/114 (7%) Query: 124 LGFHKNGYVIFTSEFLMLA---NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 L H +G+++ +E LA EV+ A +V+ L L ++ + L+ RET Sbjct: 83 LAAHASGFLLKDTEPARLAAAIREVV-----AGGRVVDPELALSALQTGES-PLSARETE 136 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+LA G EIA L LS TV YL +A +LDA NR+ A+ A G++ Sbjct: 137 VLRLAAAGEEVPEIARALFLSAGTVRNYLTAAVTRLDARNRMDAVRIARNAGWL 190 >gi|150395470|ref|YP_001325937.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150026985|gb|ABR59102.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 245 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R Sbjct: 185 LTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVR 241 >gi|331696706|ref|YP_004332945.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951395|gb|AEA25092.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 238 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE LQL DG +++EI E L LS TV ++L KL +R Q +A A+R Sbjct: 175 RELSAREVEVLQLVADGQSNKEIGEALSLSALTVKSHLSRIGRKLGTGDRAQMVALAMRA 234 Query: 232 GYI 234 G I Sbjct: 235 GVI 237 >gi|269793700|ref|YP_003313155.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269095885|gb|ACZ20321.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 226 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 38/63 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R+LT RET L+ +G ++ EIAE+L LS TV ++G+ KL +R+QA+ A Sbjct: 160 RDLTPRETDVLRAVAEGLSNAEIAEQLVLSTTTVKTHVGNMLAKLGVRDRVQAVILAYES 219 Query: 232 GYI 234 G + Sbjct: 220 GLV 222 >gi|6572977|gb|AAF17494.1|AF195615_2 transcriptional activator PhzR [Pseudomonas chlororaphis] Length = 241 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 60/151 (39%), Gaps = 15/151 (9%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEG--GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 P +W + + Q S +G G+L A P+ L + T F + Sbjct: 104 PDLWSEANDSNLCHGLAQPSFNAQGRVGMLSLARKDNPISLQ-EFEALKLMTKAFAAAIH 162 Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E I E TD + RE L+ DG TSEEI +G+ Sbjct: 163 EKISELESDVRVFNTDV------------EFSGRECDVLRWTADGKTSEEIGVIMGVCTD 210 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TVN + + K+ A NR+QA++ A+ GYI Sbjct: 211 TVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241 >gi|289666383|ref|ZP_06487964.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 200 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 40/64 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE + L+LAG+G ++ EIA++L LS TV YL KL NRI+A A + Sbjct: 137 ADPLSERERTILRLAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQ 196 Query: 231 FGYI 234 G++ Sbjct: 197 KGWL 200 >gi|239930320|ref|ZP_04687273.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438665|ref|ZP_06578055.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341560|gb|EFE68516.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 206 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA DG EIAE+ LS TV YL SA KL A NR A+ A G+ Sbjct: 146 LTAREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGAENRHTAVRLARERGW 205 Query: 234 I 234 + Sbjct: 206 V 206 >gi|171909690|ref|ZP_02925160.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 212 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + L+ RE ++L GY +EIA+KLG+ TV Y+ + VKL NR +A+AK I Sbjct: 150 SEKLSPREGEVIELLASGYIYKEIADKLGIGTETVRTYVKNICVKLRVKNRTEAVAKHI 208 >gi|300088236|ref|YP_003758758.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527969|gb|ADJ26437.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 232 Score = 48.9 bits (115), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+LA G ++ +IAEKL LS+ TV A+L + K+ +R +AI K R G Sbjct: 154 QLSPREIEILRLAARGLSNRDIAEKLELSMRTVKAHLSNIFNKMRCSSRTEAIVKGFREG 213 Query: 233 YI 234 Y+ Sbjct: 214 YV 215 >gi|15964400|ref|NP_384753.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15073577|emb|CAC45219.1| Transcriptional regulator of motility genes, LuxR family [Sinorhizobium meliloti 1021] Length = 245 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R Sbjct: 185 LTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVR 241 >gi|296271341|ref|YP_003653973.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094128|gb|ADG90080.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 228 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I D+L ++ + LT RE ++L +GY+S+EIAE L +SV TV+ + Sbjct: 142 GAVTALIRDYLARARRGERVPDSVLTPREEEIVKLIAEGYSSKEIAETLQISVKTVDRHR 201 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G + Sbjct: 202 ANVLAKLGMRDRLELTRYAIRAGLV 226 >gi|218247165|ref|YP_002372536.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257060237|ref|YP_003138125.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167643|gb|ACK66380.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256590403|gb|ACV01290.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 226 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 40/62 (64%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQL DGY++ +I+E+L ++V TV ++ + KL A +R QA +A+R G Sbjct: 165 LTERELEVLQLIVDGYSNAQISEQLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 224 Query: 234 IC 235 + Sbjct: 225 VA 226 >gi|229107368|ref|ZP_04237236.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228676097|gb|EEL31074.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 194 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 13/135 (9%) Query: 104 LSVRLEGGLLPFAGIAFPV-RLGFHKNGYVIFTSEFLMLAN--EVIIEAH-GACYQVITD 159 L + + ++ G PV R K G F ++ +M +++IE + G CY Sbjct: 65 LDSKCDTKIVILTGYDLPVYRYEAQKIGVSGFINKNIMPDKLLQILIEINEGTCY----- 119 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F + LT E LQL DGY +EIA L S T++ ++ KLD Sbjct: 120 ----FPMSTDYVEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHIFDKLDVS 175 Query: 220 NRIQAIAKAIRFGYI 234 + ++A+ K I+ GYI Sbjct: 176 SSLEAVTKGIKSGYI 190 >gi|307311542|ref|ZP_07591183.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318897|ref|ZP_07598328.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306895311|gb|EFN26066.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306899559|gb|EFN30188.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 210 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R Sbjct: 150 LTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVR 206 >gi|300693708|ref|YP_003749681.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein (luxr family) [Ralstonia solanacearum PSI07] gi|299075745|emb|CBJ35050.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein (LuxR family) [Ralstonia solanacearum PSI07] Length = 238 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 40/62 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE ++ DG ++++IA+ L +S +TV+ ++ +A KL AVN+ A+ +A G Sbjct: 176 SLTGREVEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLQAVNKTAAVVRAAMLG 235 Query: 233 YI 234 Y+ Sbjct: 236 YL 237 >gi|113476331|ref|YP_722392.1| LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110167379|gb|ABG51919.1| transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 87 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 44/73 (60%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + +S +L+ERE ++L DG T+E+IA +L +S TV+ ++ + K NR+ Sbjct: 1 MTRCKSKTHTSLSERELQVIELVADGLTNEKIASRLEISKRTVDNHISNILSKTSTHNRV 60 Query: 223 QAIAKAIRFGYIC 235 + + A+++G +C Sbjct: 61 ELVRWALQWGKVC 73 >gi|2916781|emb|CAA11948.1| unnamed protein product [Sinorhizobium meliloti] Length = 245 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R Sbjct: 185 LTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVR 241 >gi|271968610|ref|YP_003342806.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270511785|gb|ACZ90063.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 216 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Query: 163 LFKKRSSAARNLTE----RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L RS AR LTE RE ++L G T++E+A +L +S+ TV +LGS KL A Sbjct: 140 LAHPRSGGARPLTEPLTERELDVVRLVARGRTNQEVAAELFVSLSTVKTHLGSIQAKLGA 199 Query: 219 VNRIQAIAKAIRFGYIC 235 NR++ A A G + Sbjct: 200 RNRVEIAAWAWESGVVS 216 >gi|82940562|emb|CAJ44291.1| putative transcription regulator protein MotR, LuxR family [Rhizobium leguminosarum bv. viciae] Length = 248 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 39/74 (52%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + FL R LT+RE CL +G TS+EIA LG+S +T+N Y+ S K Sbjct: 171 VASFLRCGGTRVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKT 230 Query: 217 DAVNRIQAIAKAIR 230 R +AIA A+R Sbjct: 231 ATKTRSEAIAFAVR 244 >gi|209547914|ref|YP_002279831.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533670|gb|ACI53605.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 248 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 39/74 (52%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + FL R LT+RE CL +G TS+EIA LG+S +T+N Y+ S K Sbjct: 171 VASFLRCGGTRVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKT 230 Query: 217 DAVNRIQAIAKAIR 230 R +AIA A+R Sbjct: 231 ATKTRSEAIAFAVR 244 >gi|120553107|ref|YP_957458.1| response regulator receiver protein [Marinobacter aquaeolei VT8] gi|120322956|gb|ABM17271.1| response regulator receiver protein [Marinobacter aquaeolei VT8] Length = 128 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 41/61 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L L +G +++ I+++LG+SV TV ++L + KL A NR+QA+A+A G Sbjct: 67 LSDREQGVLDLLAEGLSNKAISKQLGISVATVKSHLSNIYGKLQAENRMQAVARARELGL 126 Query: 234 I 234 + Sbjct: 127 M 127 >gi|39933398|ref|NP_945674.1| two-component LuxR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39647244|emb|CAE25765.1| two-component transcriptional regulator, LuxR family [Rhodopseudomonas palustris CGA009] Length = 243 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQ A G T+ EI+ L ++ TV +L A KLDA NR A+AKA+ G Sbjct: 180 RLTPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAKALTLG 239 Query: 233 YI 234 I Sbjct: 240 LI 241 >gi|332142526|ref|YP_004428264.1| DNA-binding response regulator, LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552548|gb|AEA99266.1| DNA-binding response regulator, LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 205 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+++E S L+LA +G +++IA L LS TV YL A KLDA NR+ A A + G+ Sbjct: 145 LSKKEMSALKLASEGLKTQDIARSLFLSEGTVRNYLSEAISKLDATNRVDAARIAKQKGW 204 Query: 234 I 234 + Sbjct: 205 L 205 >gi|320159841|ref|YP_004173065.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319993694|dbj|BAJ62465.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 214 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 61/111 (54%), Gaps = 5/111 (4%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFKKRS--SAARNLTERETSCLQ 183 NGY++ +E L ++ A G +V+ L + ++ + S+ + L++RE LQ Sbjct: 102 NGYILKNTEPEDLRKALLNIAEGKGVLSPEVVPPVLGVMQRGTLDSSPQLLSDRELEVLQ 161 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+++IA +L +S +TV ++ KL+A NR +A+ KA + G + Sbjct: 162 CLAEGLTTQQIASRLFISENTVKTHIRHILDKLEASNRTEAVGKATQLGIL 212 >gi|304406993|ref|ZP_07388647.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304343980|gb|EFM09820.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 200 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 39/65 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LTERE L+ A +G ++ EIA ++ L+ TV Y+ + KL+A NRI AI+ A Sbjct: 135 AGNPLTEREQEVLRYASEGLSAREIAARVHLTAGTVRNYMSESIRKLEAKNRIDAISIAT 194 Query: 230 RFGYI 234 G++ Sbjct: 195 HKGWL 199 >gi|302543141|ref|ZP_07295483.1| putative response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302460759|gb|EFL23852.1| putative response regulator [Streptomyces himastatinicus ATCC 53653] Length = 213 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 34/63 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G + EIA KL S TV + T +LD NR A+A A+R G Sbjct: 151 GLTPREIDVLRLVAEGMGTGEIASKLSYSERTVKNIMQGLTTRLDLRNRAHAVAYALREG 210 Query: 233 YIC 235 YI Sbjct: 211 YIS 213 >gi|218658162|ref|ZP_03514092.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli IE4771] Length = 144 Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 39/74 (52%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + FL R LT+RE CL +G TS+EIA LG+S +T+N Y+ S K Sbjct: 67 VASFLRCGGARVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKT 126 Query: 217 DAVNRIQAIAKAIR 230 R +AIA A+R Sbjct: 127 ATKTRSEAIAFAVR 140 >gi|182437656|ref|YP_001825375.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778292|ref|ZP_08237557.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178466172|dbj|BAG20692.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658625|gb|EGE43471.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 206 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA DG EIAE+ LS TV YL SA K+ A NR A+ A G+ Sbjct: 146 LTAREAEVLELAADGAPVAEIAERASLSQGTVRNYLSSAATKIGAENRHTAVRLARERGW 205 Query: 234 I 234 + Sbjct: 206 V 206 >gi|327438509|dbj|BAK14874.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 204 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 52/104 (50%), Gaps = 2/104 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GY++ S L N + I G ++ L F + LTERE+ L+L +G Sbjct: 98 GYLLKDSPIEELVNSIRIIMDG--RRIYAPELVDFVYEDDSENPLTERESQVLELVAEGK 155 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T++EIA +L LS TV Y+ KL NRI+AIA+ G+ Sbjct: 156 TTKEIAAELYLSAGTVRNYISVILDKLGVGNRIEAIARFKEKGW 199 >gi|192288754|ref|YP_001989359.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192282503|gb|ACE98883.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 243 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQ A G T+ EI+ L ++ TV +L A KLDA NR A+AKA+ G Sbjct: 180 RLTPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAKALTLG 239 Query: 233 YI 234 I Sbjct: 240 LI 241 >gi|229492666|ref|ZP_04386467.1| regulatory protein, LuxR [Rhodococcus erythropolis SK121] gi|229320325|gb|EEN86145.1| regulatory protein, LuxR [Rhodococcus erythropolis SK121] Length = 285 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L RE L+ G ++ EIAE LGL +TV +YL SA KL A NRIQA+ A G Sbjct: 224 LRPREIEVLEHVARGSSNREIAEALGLLPNTVKSYLKSAMRKLHANNRIQAVLAARELGV 283 Query: 234 IC 235 + Sbjct: 284 LS 285 >gi|315125633|ref|YP_004067636.1| response regulator receiver domain protein (CheY-like) [Pseudoalteromonas sp. SM9913] gi|315014146|gb|ADT67484.1| response regulator receiver domain protein (CheY-like) [Pseudoalteromonas sp. SM9913] Length = 204 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT++E L+LA DG + EIA++L +S T YL A KL+A NRI A A + G+ Sbjct: 144 LTDKERKALKLASDGLKTSEIAKQLYISEGTTRNYLSDAIAKLNATNRIDAARIARQKGW 203 Query: 234 I 234 + Sbjct: 204 L 204 >gi|149184172|ref|ZP_01862490.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148831492|gb|EDL49925.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 217 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/84 (38%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 152 ACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A Q +E+ R+ R NL+ RET L G T+ EIA LG+ TV Y+ Sbjct: 132 AVAQAAHTQMEMLASRADGLRTNLSNRETEILHWIALGKTNSEIATILGIGGPTVATYIK 191 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KLD +R A KAIR+G I Sbjct: 192 RVFDKLDVKDRSSAAVKAIRWGII 215 >gi|119387044|ref|YP_918099.1| response regulator receiver protein [Paracoccus denitrificans PD1222] gi|119377639|gb|ABL72403.1| response regulator receiver protein [Paracoccus denitrificans PD1222] Length = 233 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 6/86 (6%) Query: 149 AHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 AHG Y ++I+ ++ LT R+ L+L DG +++ IA LGLSVHTV Sbjct: 146 AHGGNYIFPEIISPVGVAMPVPATDELGLTRRQQDVLRLVADGQSNKRIALSLGLSVHTV 205 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRF 231 +L +A+++L A NR +A A+R+ Sbjct: 206 KLHLRNASLRLGAHNRTEA---AMRY 228 >gi|222149067|ref|YP_002550024.1| transcriptional regulator [Agrobacterium vitis S4] gi|221736052|gb|ACM37015.1| transcriptional regulator [Agrobacterium vitis S4] Length = 230 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTE E CL L +GYT +A + ++ V A S K+ A NR QA+AKA+ G Sbjct: 167 DLTELEHHCLSLMAEGYTQVRVARTMQMTFEAVIALEASIMRKVQATNRFQAVAKAVLLG 226 Query: 233 YIC 235 + Sbjct: 227 IVA 229 >gi|253987738|ref|YP_003039094.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638616|emb|CAR67235.1| similar to probable transcription regulator sdia of escherichia coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779188|emb|CAQ82348.1| similar to probable transcription regulator SdiA of Escherichia coli [Photorhabdus asymbiotica] Length = 242 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 3/77 (3%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 T +L+ F ++ N RE L+ DG TS EIA + ++ TV+ +L + KL Sbjct: 169 TKYLQFFYVDETSFSN---RELEVLRYTADGMTSSEIALTICVTKSTVDFHLMNIVKKLG 225 Query: 218 AVNRIQAIAKAIRFGYI 234 N+ QAIAKA+ GYI Sbjct: 226 CRNKFQAIAKAVLLGYI 242 >gi|190890349|ref|YP_001976891.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695628|gb|ACE89713.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 248 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 39/74 (52%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + FL R LT+RE CL +G TS+EIA LG+S +T+N Y+ S K Sbjct: 171 VASFLRCGGARVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKT 230 Query: 217 DAVNRIQAIAKAIR 230 R +AIA A+R Sbjct: 231 ATKTRSEAIAFAVR 244 >gi|302526449|ref|ZP_07278791.1| predicted protein [Streptomyces sp. AA4] gi|302435344|gb|EFL07160.1| predicted protein [Streptomyces sp. AA4] Length = 279 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 36/58 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +L+ RE L+ A G T+ +IAE LGL TV +YL +A KLDA R+QA+ A R Sbjct: 217 SLSPRELDVLEGAAAGQTNADIAEALGLGPETVKSYLRNAMRKLDAKTRLQAVNAARR 274 >gi|316931698|ref|YP_004106680.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315599412|gb|ADU41947.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris DX-1] Length = 243 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQ A G T+ EI+ L ++ TV +L A KLDA NR A+AKA+ G Sbjct: 180 KLTARECEILQWAAQGKTAWEISMILCIAERTVKFHLIEAARKLDAANRTAAVAKALTLG 239 Query: 233 YI 234 I Sbjct: 240 LI 241 >gi|332366199|gb|EGJ43954.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 199 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%) Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +RN L+++E LQ A DG +++EIAEKL LS TV Y+ + KLDA NR +A+ Sbjct: 135 SRNPLSQQERLVLQAAADGLSNKEIAEKLFLSNGTVRNYMSAILTKLDAENRTEAV 190 >gi|162148611|ref|YP_001603072.1| LuxR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787188|emb|CAP56781.1| putative transcriptional regulator, luxR family [Gluconacetobacter diazotrophicus PAl 5] Length = 239 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 35/188 (18%) Query: 71 TYGDDFLFHF-------------NSG--LLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 TY D +L H+ N+G +P W+++Q+ +SV+ L Sbjct: 61 TYPDAWLKHYHERKYLDIDPTIVNAGRSYVPYRWEALQD---------ISVKQRQMFLDI 111 Query: 116 A--GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSA- 170 A GI + + H F + F + + E A + + + E K S A Sbjct: 112 AETGIKGGITMSLHTPDRAAFVTSFAF--TKAVSEDRDLVALGFINSQYYETLSKLSEAE 169 Query: 171 ----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + RE CL G T+ +I+ LG+S +T+NAYL + +KL RIQA+ Sbjct: 170 LPGPVPTFSRREKECLLWVSRGKTTWDISVILGISENTINAYLKNVILKLGCSGRIQAVL 229 Query: 227 KAIRFGYI 234 +AI I Sbjct: 230 RAIDLNLI 237 >gi|291003373|ref|ZP_06561346.1| two component transcriptional regulator, LuxR family protein [Saccharopolyspora erythraea NRRL 2338] Length = 221 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE LQL DG +++EI E L LS TV ++L KL +R Q +A A+R Sbjct: 158 RELSGREVEVLQLVADGRSNKEIGEALNLSALTVKSHLSRIGRKLGTGDRAQMVALAMRA 217 Query: 232 GYI 234 G I Sbjct: 218 GVI 220 >gi|166368199|ref|YP_001660472.1| transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166090572|dbj|BAG05280.1| transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 93 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 40/65 (61%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +L++RE L L +G T++EI+EKL +S TV+ ++ + K NR++ + A+ Sbjct: 9 AASLSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVELVRWALH 68 Query: 231 FGYIC 235 +G +C Sbjct: 69 WGKVC 73 >gi|21222522|ref|NP_628301.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256786408|ref|ZP_05524839.1| two-component system response regulator [Streptomyces lividans TK24] gi|8052435|emb|CAB92376.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 222 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 35/52 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERET L++ G G+T+ EIAE+L L+ TV ++G K + +R+QA+ Sbjct: 161 LTERETEILRVMGQGWTNTEIAERLHLAESTVKTHVGRILAKTGSRDRVQAV 212 >gi|300689864|ref|YP_003750859.1| transcriptional activator protein solR [Ralstonia solanacearum PSI07] gi|299076924|emb|CBJ49537.1| Transcriptional activator protein solR [Ralstonia solanacearum PSI07] Length = 236 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G Sbjct: 176 LTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIVIGL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|119471825|ref|ZP_01614158.1| response regulator receiver domain protein (CheY-like) [Alteromonadales bacterium TW-7] gi|119445315|gb|EAW26604.1| response regulator receiver domain protein (CheY-like) [Alteromonadales bacterium TW-7] Length = 201 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT++E L+LA DG + EIA +L +S T YL A KL+A NRI A A + Sbjct: 138 ADPLTDKERKALKLASDGLKTSEIATQLFISEGTTRNYLSDAIAKLNATNRIDAARIAKQ 197 Query: 231 FGYI 234 G++ Sbjct: 198 KGWL 201 >gi|284041551|ref|YP_003391891.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945772|gb|ADB48516.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 243 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 43/75 (57%), Gaps = 3/75 (4%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +L ++RSSA L+ E L L +G ++EE AE L LS HTV +L + KL+A Sbjct: 170 LTDLRERRSSA---LSSAELRVLALVAEGSSTEEAAELLSLSPHTVRTHLRNVMRKLEAS 226 Query: 220 NRIQAIAKAIRFGYI 234 +R A+A AIR I Sbjct: 227 SRAHAVAIAIRESAI 241 >gi|307700594|ref|ZP_07637626.1| response regulator receiver domain protein [Mobiluncus mulieris FB024-16] gi|307614239|gb|EFN93476.1| response regulator receiver domain protein [Mobiluncus mulieris FB024-16] Length = 233 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 42/65 (64%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LTERET L+L G T++E+A+KL +S+ TV ++G+ K+ A +R+QA+ A Sbjct: 168 ALASLTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDRVQAVIFAY 227 Query: 230 RFGYI 234 G + Sbjct: 228 ENGLV 232 >gi|306817801|ref|ZP_07451542.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239] gi|304649450|gb|EFM46734.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239] Length = 233 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 42/65 (64%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LTERET L+L G T++E+A+KL +S+ TV ++G+ K+ A +R+QA+ A Sbjct: 168 ALASLTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDRVQAVIFAY 227 Query: 230 RFGYI 234 G + Sbjct: 228 ENGLV 232 >gi|227876856|ref|ZP_03994965.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|269977833|ref|ZP_06184790.1| response regulator protein VraR [Mobiluncus mulieris 28-1] gi|227842753|gb|EEJ52953.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|269934003|gb|EEZ90580.1| response regulator protein VraR [Mobiluncus mulieris 28-1] Length = 233 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 42/65 (64%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LTERET L+L G T++E+A+KL +S+ TV ++G+ K+ A +R+QA+ A Sbjct: 168 ALASLTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDRVQAVIFAY 227 Query: 230 RFGYI 234 G + Sbjct: 228 ENGLV 232 >gi|225869438|ref|YP_002745386.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225702714|emb|CAX00841.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 199 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 4/80 (5%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 QVI D +L +K+ + LTE E L+L D Y++E+I++KL +S TV+ ++ + Sbjct: 124 QVIPD--DLLQKQENHL--LTESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICA 179 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R+ A+ +AIR I Sbjct: 180 KLNVTSRVGAVREAIRLKLI 199 >gi|315225545|ref|ZP_07867355.1| LuxR family transcriptional regulator [Capnocytophaga ochracea F0287] gi|314944489|gb|EFS96528.1| LuxR family transcriptional regulator [Capnocytophaga ochracea F0287] Length = 216 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +TD + F S+ LT RE L LA +G S+EI+EKL +S+HTVN + + KL Sbjct: 147 LTDEIVPFAIESATDTLLTPREREILALAKEGMFSKEISEKLNISIHTVNRHRQNILEKL 206 Query: 217 DAVNRIQAI 225 N I+AI Sbjct: 207 QVDNMIEAI 215 >gi|289770298|ref|ZP_06529676.1| two-component system response regulator [Streptomyces lividans TK24] gi|289700497|gb|EFD67926.1| two-component system response regulator [Streptomyces lividans TK24] Length = 235 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 35/52 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERET L++ G G+T+ EIAE+L L+ TV ++G K + +R+QA+ Sbjct: 174 LTERETEILRVMGQGWTNTEIAERLHLAESTVKTHVGRILAKTGSRDRVQAV 225 >gi|159029157|emb|CAO87517.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 93 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 40/66 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +L++RE L L +G T++EI+EKL +S TV+ ++ + K NR++ + A+ Sbjct: 8 TAASLSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVELVRWAL 67 Query: 230 RFGYIC 235 +G +C Sbjct: 68 HWGKVC 73 >gi|302552511|ref|ZP_07304853.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470129|gb|EFL33222.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 203 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA DG EIAE+ LS TV YL SA KL A NR A+ A G+ Sbjct: 143 LTVREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGAENRHAAVRLARERGW 202 Query: 234 I 234 + Sbjct: 203 V 203 >gi|269126984|ref|YP_003300354.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311942|gb|ACY98316.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 201 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/52 (53%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L++A G EEIA L L+ TV YL SA KL+A NRI AI Sbjct: 141 LTERELEVLRIAASGSGVEEIAATLFLTTGTVRNYLASAVSKLNARNRIDAI 192 >gi|196234582|ref|ZP_03133403.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196221370|gb|EDY15919.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 209 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 3/70 (4%) Query: 161 LELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 ++ F+ + AR L+ RE ++L GY +EI +KLG+ TV +Y+ + +KL Sbjct: 137 VQYFRGTTKPARETEKLSPRECEVIELLASGYIYKEIGDKLGIGAETVRSYVKNICIKLQ 196 Query: 218 AVNRIQAIAK 227 NR +A+AK Sbjct: 197 VKNRTEAVAK 206 >gi|297159127|gb|ADI08839.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 206 Score = 48.5 bits (114), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 3/106 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G++ T+ LA E+I HG + D S+ LT RE L+LA DG Sbjct: 104 RGFLPKTASAQRLA-EIIRTVHGGNRYIDPDLA--ADAISAGDSPLTAREAELLELAADG 160 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA++ LS TV YL SA K+ A NR A A G+I Sbjct: 161 ASIAEIAQRAALSQGTVRNYLSSAASKIPAENRHAAARTARERGWI 206 >gi|312128700|ref|YP_003993574.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor hydrothermalis 108] gi|311778719|gb|ADQ08205.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor hydrothermalis 108] Length = 211 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 19/113 (16%) Query: 124 LGFHKNGYVIFTSEFLMLAN--------EVIIEAHGACYQVITDFLELFKKRSSA----- 170 L F +GY++ +S+ + N +V+++ A Y I+D L KR+S Sbjct: 95 LSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKEIALY--ISDVL----KRTSKQLLEK 148 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +NLTERE +L GY+++EIA L +S TV Y+ S KL+ NR Q Sbjct: 149 TQNLTERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQ 201 >gi|226309444|ref|YP_002769406.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226188563|dbj|BAH36667.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 204 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ A DG + E+IA + LS T YL SA KL A NR +A A R G+ Sbjct: 144 LTPREADVLEYAADGASIEQIASRAHLSAGTTRNYLSSAVTKLGAANRHEAAVIARRQGW 203 Query: 234 I 234 I Sbjct: 204 I 204 >gi|218514697|ref|ZP_03511537.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 124 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 39/74 (52%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + FL R LT+RE CL +G TS+EIA LG+S +T+N Y+ S K Sbjct: 47 VASFLRCGGARVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKT 106 Query: 217 DAVNRIQAIAKAIR 230 R +AIA A+R Sbjct: 107 ATKTRSEAIAFAVR 120 >gi|297567827|ref|YP_003686798.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946] gi|296852276|gb|ADH65290.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946] Length = 206 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 40/67 (59%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S L+ RE L+L +G +++EIA++LG+S+ TV ++ KL A +R QA K Sbjct: 140 SGGQAQLSPRELEVLRLIAEGLSNKEIAQRLGISLSTVKTHIEELLAKLSASDRTQAAIK 199 Query: 228 AIRFGYI 234 A+R G + Sbjct: 200 AVRQGLL 206 >gi|227505759|ref|ZP_03935808.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227197727|gb|EEI77775.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 207 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE ++ AG+G + E+IA+++ L+ T YL SA KL A NR +A +A G+ Sbjct: 147 LTEREAEVIEAAGNGGSIEQIAKEVFLATGTTRNYLSSAMAKLGAQNRFEAYLRARESGW 206 Query: 234 I 234 I Sbjct: 207 I 207 >gi|284045613|ref|YP_003395953.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949834|gb|ADB52578.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 208 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L L G T+ EIAE+L LS HTV + + KL A NR +A+ +A R G Sbjct: 147 LSEREQEVLTLIAGGSTNREIAEELYLSPHTVKEHTSALYRKLKARNRAEAVQRAQRIGL 206 Query: 234 I 234 + Sbjct: 207 L 207 >gi|171915706|ref|ZP_02931176.1| DNA-binding response regulator [Verrucomicrobium spinosum DSM 4136] Length = 220 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 161 LELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LE+F K + + L+ RE L L G +EIA++L LSVHTV+ YL KL+ Sbjct: 145 LEMFSKLAPKTHDYGLSAREKEILDLMVKGLIKKEIADRLTLSVHTVDTYLRRIYEKLEV 204 Query: 219 VNRIQAIAKAIR 230 R A+AKA++ Sbjct: 205 NTRTGAVAKALK 216 >gi|311030273|ref|ZP_07708363.1| two-component response regulator DesR [Bacillus sp. m3-13] gi|311032980|ref|ZP_07711070.1| two-component response regulator DesR [Bacillus sp. m3-13] Length = 199 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 38/60 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + L+L DG ++EIA++L + TV Y+ + KL+ NRI+AI ++ G+ Sbjct: 138 LTEREKAVLELVADGKNTQEIADELRIKSGTVRNYISNILDKLEVKNRIEAITQSKEKGW 197 >gi|126736492|ref|ZP_01752233.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. CCS2] gi|126714030|gb|EBA10900.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. CCS2] Length = 254 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 38/68 (55%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L+L S RNLT+R+ LQ GDG T+++IA LGL+ TV +L A LD Sbjct: 173 LKLLTLPYSGERNLTKRQREVLQWVGDGKTTQDIALLLGLTPATVEKHLRLAREALDVET 232 Query: 221 RIQAIAKA 228 QA+ KA Sbjct: 233 TAQAVLKA 240 >gi|318061656|ref|ZP_07980377.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318076898|ref|ZP_07984230.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 214 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+ A DG EIA++ GLS TV YL SA KL A NR A+ A G+ Sbjct: 154 LSAREAEVLEYAADGAPVAEIAQRAGLSPGTVRNYLSSAVTKLGAENRHAAVRTARSRGW 213 Query: 234 I 234 + Sbjct: 214 V 214 >gi|312623477|ref|YP_004025090.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor kronotskyensis 2002] gi|312203944|gb|ADQ47271.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor kronotskyensis 2002] Length = 211 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 57/109 (52%), Gaps = 11/109 (10%) Query: 124 LGFHKNGYVIFTSEFLMLAN--------EVIIEAHGACYQVITDFLELFKKRS-SAARNL 174 L F +GY++ +S+ + N +V+++ A Y I+D L+ K+ +NL Sbjct: 95 LSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKEIALY--ISDVLKRTSKQYFEKTQNL 152 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 TERE +L GY+++EIA L +S TV Y+ S KL+ NR Q Sbjct: 153 TERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQ 201 >gi|229494690|ref|ZP_04388448.1| transcriptional regulatory protein UhpA [Rhodococcus erythropolis SK121] gi|229318357|gb|EEN84220.1| transcriptional regulatory protein UhpA [Rhodococcus erythropolis SK121] Length = 204 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ A DG + E+IA + LS T YL SA KL A NR +A A R G+ Sbjct: 144 LTPREADVLEYAADGASIEQIASRAHLSAGTTRNYLSSAVTKLGAANRHEAAVIARRQGW 203 Query: 234 I 234 I Sbjct: 204 I 204 >gi|163761077|ref|ZP_02168154.1| two component transcriptional regulator, LuxR family protein [Hoeflea phototrophica DFL-43] gi|162281628|gb|EDQ31922.1| two component transcriptional regulator, LuxR family protein [Hoeflea phototrophica DFL-43] Length = 223 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 9/114 (7%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR------NLTERETS 180 GYV+ + + +V+ G Q+ L + ++ + +LT RET Sbjct: 110 GYVLKSGSLATIGKDVLSVIEGGSPISPQIARHLLAMVSSGAAGSSEGAPQIDLTNRETE 169 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY EI EKLG+S TV ++ + KL+ + +AIA+A R G + Sbjct: 170 ILNAVAKGYKRREIGEKLGISTGTVGNHINNIYQKLNVNSNTEAIARATRMGLL 223 >gi|27802473|gb|AAO21111.1| BisR [Rhizobium leguminosarum bv. viciae] Length = 246 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 31/62 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L RE CL A G S++IAE LGLS HT YL SA KL AIA A+ Sbjct: 178 LGTREVECLHWASRGKDSKDIAEILGLSEHTARGYLKSARYKLGCPTLSAAIAHAVHLNL 237 Query: 234 IC 235 I Sbjct: 238 IT 239 >gi|315504459|ref|YP_004083346.1| transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315411078|gb|ADU09195.1| transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 978 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G+++ IAE+L +S T + ++ KLD NR++A A A R G Sbjct: 905 LTSREQEVLRLVAEGHSNSRIAERLFISPKTASVHVSRIIAKLDVTNRVEAAALAHRLGL 964 Query: 234 I 234 + Sbjct: 965 L 965 >gi|104781277|ref|YP_607775.1| response regulator [Pseudomonas entomophila L48] gi|95110264|emb|CAK14971.1| putative response regulator, LuxR family [Pseudomonas entomophila L48] Length = 130 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 38/66 (57%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT R+ LQL G S+E+A +LGLS+ TVN ++ L NR A+++A Sbjct: 54 SEAVRLTRRQQEILQLLHRGLASKEVAAELGLSLGTVNNHVTGLMRVLGVTNRTHAVSRA 113 Query: 229 IRFGYI 234 + GY+ Sbjct: 114 MDLGYL 119 >gi|258653619|ref|YP_003202775.1| LuxR family ATP-dependent transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556844|gb|ACV79786.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Nakamurella multipartita DSM 44233] Length = 901 Score = 48.5 bits (114), Expect = 8e-04, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 38/64 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + + LT RE L++ G G T+++IA L ++V+TV YL + KL A NR +A A A Sbjct: 835 TPSSGLTARELDILRMVGSGRTNQQIATSLTVTVNTVKWYLKNIYTKLGATNRTEATAIA 894 Query: 229 IRFG 232 R G Sbjct: 895 RREG 898 >gi|195978994|ref|YP_002124238.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975699|gb|ACG63225.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 199 Score = 48.5 bits (114), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 49/80 (61%), Gaps = 4/80 (5%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 QVI D +L +K+ S LTE E L+L D Y++E+I++KL +S TV+ ++ + Sbjct: 124 QVIPD--DLLQKQESHL--LTESEIEILRLISDEYSNEKISKKLYISRRTVDTHVSNICA 179 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R+ A+ +AI+ I Sbjct: 180 KLNVTSRVGAVREAIKLKLI 199 >gi|222530583|ref|YP_002574465.1| LuxR family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457430|gb|ACM61692.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor bescii DSM 6725] Length = 211 Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 19/113 (16%) Query: 124 LGFHKNGYVIFTSEFLMLAN--------EVIIEAHGACYQVITDFLELFKKRSSA----- 170 L F +GY++ +S+ + N +V+++ A Y I+D L KR+S Sbjct: 95 LSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKEIALY--ISDVL----KRTSKQLLEK 148 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +NLTERE +L GY+++EIA L +S TV Y+ S KL+ NR Q Sbjct: 149 TQNLTERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQ 201 >gi|302869068|ref|YP_003837705.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|302571927|gb|ADL48129.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] Length = 978 Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G+++ IAE+L +S T + ++ KLD NR++A A A R G Sbjct: 905 LTSREQEVLRLVAEGHSNSRIAERLFISPKTASVHVSRIIAKLDVTNRVEAAALAHRLGL 964 Query: 234 I 234 + Sbjct: 965 L 965 >gi|254438192|ref|ZP_05051686.1| Autoinducer binding domain protein [Octadecabacter antarcticus 307] gi|198253638|gb|EDY77952.1| Autoinducer binding domain protein [Octadecabacter antarcticus 307] Length = 256 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 39/70 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ + L+ RE L GY+ ++A+ L +S HT+ AY+ SA KL A N + A Sbjct: 166 KRMPDPVKPLSGREIDVLTYLAMGYSRSQVAQTLTISEHTLRAYVESARFKLGASNTMHA 225 Query: 225 IAKAIRFGYI 234 +A+A+ G I Sbjct: 226 VARAVSEGLI 235 >gi|254442908|ref|ZP_05056384.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae bacterium DG1235] gi|198257216|gb|EDY81524.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae bacterium DG1235] Length = 200 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 6/98 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTERETSCL 182 +G+V + EF ++ N + I A G C+ +V+ + + S NLT RE L Sbjct: 83 HGFVEKSVEFGIVLNALNIVADGGCFFGFNITEVLRSVVRSIDRSSERTDNLTAREREVL 142 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 G ++++IA KLGLSV T++ + S KLD N Sbjct: 143 TFIASGNSNKDIALKLGLSVKTIDNHRCSMMRKLDLHN 180 >gi|269125139|ref|YP_003298509.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310097|gb|ACY96471.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 266 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 36/64 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AA L+ RE L A G + EIA ++GL+ TV AYL S KL NR++A+ +A Sbjct: 201 AAGRLSRREHEALSHAAQGLPNAEIAARMGLTPGTVKAYLRSVMRKLGCRNRMEAVNRAR 260 Query: 230 RFGY 233 GY Sbjct: 261 ALGY 264 >gi|225871440|ref|YP_002747387.1| response regulator [Streptococcus equi subsp. equi 4047] gi|225700844|emb|CAW95568.1| putative response regulator [Streptococcus equi subsp. equi 4047] Length = 199 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 4/80 (5%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 QVI D +L ++ S LTE E L+L D Y++E+I++KL +S TV+ ++ + Sbjct: 124 QVIPD--DLLQREESHL--LTESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICA 179 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R+ A+ +AIR I Sbjct: 180 KLNVTSRVGAVREAIRLKLI 199 >gi|171909746|ref|ZP_02925216.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 215 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 13/95 (13%) Query: 146 IIEAHGA--------CYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSE 192 I++AH QV++ F + ++A + L ERE L L G+ + Sbjct: 116 IVQAHAGGSPMSPQVARQVVSFFHRVTDTATTAPPDPEMSALAEREREVLDLLSKGFLYK 175 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 EIA++LG+S HTVN+++ KL +R QA+AK Sbjct: 176 EIADQLGISTHTVNSHIRRIYEKLHVRSRAQAVAK 210 >gi|167646083|ref|YP_001683746.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167348513|gb|ABZ71248.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 244 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L R +A LT RE CL+ A G T + + LG++ TV +L + KLDA N++ Sbjct: 169 LASVRPAATAALTAREIECLRFAAVGRTVADTGQALGITSRTVEFHLKNVAEKLDATNKV 228 Query: 223 QAIAKAIRFGYI 234 A+A A+ G + Sbjct: 229 HAVAIAVSQGLV 240 >gi|295837594|ref|ZP_06824527.1| two-component system response regulator TcsR2 [Streptomyces sp. SPB74] gi|295826582|gb|EDY45254.2| two-component system response regulator TcsR2 [Streptomyces sp. SPB74] Length = 214 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+ A DG EIA++ GLS TV YL SA KL A NR A+ A G+ Sbjct: 154 LSAREAEVLEYAADGAPVAEIAQRAGLSPGTVRNYLSSAVTKLGAENRHAAVRAARSRGW 213 Query: 234 I 234 + Sbjct: 214 V 214 >gi|256377649|ref|YP_003101309.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921952|gb|ACU37463.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 189 Score = 48.1 bits (113), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 39/81 (48%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 YQ + L + LT ++T+ LQL DG + IA L S HTV + T Sbjct: 109 YQALVRLLGRSGEGVVQVEALTAKQTAVLQLMADGLGNSAIAAALACSEHTVKNVIYELT 168 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 +L A NR A+A A+R G + Sbjct: 169 ARLRARNRAHAVAHAVRLGLV 189 >gi|302522670|ref|ZP_07275012.1| LuxR family transcriptional regulator [Streptomyces sp. SPB78] gi|318057801|ref|ZP_07976524.1| response regulator [Streptomyces sp. SA3_actG] gi|302431565|gb|EFL03381.1| LuxR family transcriptional regulator [Streptomyces sp. SPB78] Length = 290 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 38/69 (55%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + A LT RE L + +G T+ +A +LGL TV AYL +A KL A R +A+A Sbjct: 222 RGAQAPPLTPREVEVLVIVAEGATNAAVASRLGLRPETVKAYLRAAMRKLGARTRGEAVA 281 Query: 227 KAIRFGYIC 235 A R G + Sbjct: 282 VARRAGVVA 290 >gi|225181065|ref|ZP_03734512.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225168262|gb|EEG77066.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 207 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 39/59 (66%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 KK+ A+ LT+RE L+L G+G +++EIA+KL L+ TV Y+ + VKL+ +R Q Sbjct: 140 KKKDPASFQLTKREFEVLKLVGEGLSNDEIAQKLFLTPGTVRNYISNLLVKLNLRDRTQ 198 >gi|297200745|ref|ZP_06918142.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197712315|gb|EDY56349.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 202 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA DG EIAE+ LS TV YL SA KL A NR A+ A G+ Sbjct: 142 LTVREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGAENRHAAVRLARERGW 201 Query: 234 I 234 + Sbjct: 202 V 202 >gi|209528219|ref|ZP_03276686.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209491341|gb|EDZ91729.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 236 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G ++ EIAEKL ++V TV ++ S KL A +R QA +A+R G+ Sbjct: 175 LTERELEVLELIVGGRSNAEIAEKLYITVGTVKTHVRSILNKLCADDRTQAAVRALRSGW 234 Query: 234 I 234 I Sbjct: 235 I 235 >gi|256420776|ref|YP_003121429.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256035684|gb|ACU59228.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 211 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 12/114 (10%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--LTERETS 180 GY++ S+ + + + G Y Q+I D +F+ + S +N LT RE Sbjct: 101 GYLLKESDDVTILQAIETVQKGGQYLSPALNQQLIED---MFRNKKSEKKNTALTRREKE 157 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQL D +T++EIA+KL LS+HTV + S KL+ N + A++ G + Sbjct: 158 VLQLIIDEHTNQEIADKLFLSLHTVENHRISLLHKLEVKNTAGLVKVALQTGLV 211 >gi|170745123|ref|YP_001766580.1| two component LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658724|gb|ACB27778.1| two component transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 198 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 47/102 (46%), Gaps = 16/102 (15%) Query: 149 AHGACY---------QVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSE 192 AHGAC +++T E+ + S+A R LT R+ L L G G +++ Sbjct: 96 AHGACAFLSKADRPDRMMTVLREMLARSSAAPRAGAALCPTLTPRQAEVLTLVGRGLSNK 155 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I LGLS HTV ++ L R +A+ KA + G I Sbjct: 156 MIGRSLGLSEHTVRGHVQGLLSVLGVTRRAEAVFKAQQLGLI 197 >gi|257069188|ref|YP_003155443.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560006|gb|ACU85853.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 229 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 41/71 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ +S NLTERE L L G G++++EI +L ++ TV ++G KL A +R+QA Sbjct: 155 QQDASVLENLTEREREVLTLMGRGFSNQEIGAELFVAEATVKTHVGRVLAKLGARDRVQA 214 Query: 225 IAKAIRFGYIC 235 + A G + Sbjct: 215 VIIAFETGLVS 225 >gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter asiaticus str. psy62] gi|254040371|gb|ACT57167.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE CL +G TS+EIA LG+S +TVN Y+ S K R AIA A+R Sbjct: 186 LTGREVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVR 242 >gi|318042198|ref|ZP_07974154.1| DNA-binding response regulator [Synechococcus sp. CB0101] Length = 236 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQ T+ EIA L LS+ TV +++ KLDA +R+QA K IR G Sbjct: 170 LTERELEVLQRIAANATNPEIAADLFLSIETVKSHVAQVLHKLDARSRLQAAIKGIRLGL 229 Query: 234 I 234 + Sbjct: 230 V 230 >gi|310769028|gb|ADP21168.1| PhzR [Pseudomonas chlororaphis] Length = 241 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ DG TSEEI +G+ TVN + + K+ A NR+QA++ A+ GYI Sbjct: 184 RECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241 >gi|222150233|ref|YP_002551190.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221737215|gb|ACM38178.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 246 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G TS E+++ L +S HTV+ Y+ KL+A NR +A A R G Sbjct: 185 LTRRELEILNYLGEGMTSNEMSKLLEISNHTVDWYVNELQDKLNAKNRQHMVAIAYRLGL 244 Query: 234 I 234 I Sbjct: 245 I 245 >gi|94496793|ref|ZP_01303368.1| hypothetical protein SKA58_16678 [Sphingomonas sp. SKA58] gi|94423806|gb|EAT08832.1| hypothetical protein SKA58_16678 [Sphingomonas sp. SKA58] Length = 256 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L R C+ LAG G++++EIA +LGL+ TV+ YL A DA +R + + A+ Sbjct: 182 APRLHPRPRDCVVLAGRGFSNKEIARELGLTPRTVDGYLTEARRLFDAHDRAELVVSAVL 241 Query: 231 FGYI 234 G I Sbjct: 242 AGEI 245 >gi|325293391|ref|YP_004279255.1| transcriptional regulator, MerR family [Agrobacterium sp. H13-3] gi|325061244|gb|ADY64935.1| transcriptional regulator, MerR family [Agrobacterium sp. H13-3] Length = 231 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+ E CL+L +GY +A LGLS + +N K A NR QA+AKA+ G Sbjct: 169 LTDNERKCLELMAEGYAPVRLARALGLSGNDLNELEAKIIGKFSASNRFQAVAKAVLLGV 228 Query: 234 I 234 I Sbjct: 229 I 229 >gi|306850701|gb|ADN06870.1| transcriptional activator PhzR [Pseudomonas sp. CMR12a] Length = 241 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ DG TSEEI +G+ TVN + + K+ A NR+QA++ A+ GYI Sbjct: 184 RECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVALGYI 241 >gi|134101945|ref|YP_001107606.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|134101947|ref|YP_001107608.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914568|emb|CAM04681.1| two component transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] gi|133914570|emb|CAM04683.1| two component transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] Length = 150 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 159 DFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 D+L E+ R A LT RE L+L DG + EIA+KL S TV + T +L Sbjct: 73 DYLQREVLTPRGLNASGLTTREIDVLRLMADGLDTAEIAQKLCYSERTVKNVVYGVTSRL 132 Query: 217 DAVNRIQAIAKAIRFGYI 234 + NR A+A A+R G I Sbjct: 133 NLRNRPHAVAYAMRAGVI 150 >gi|284050135|ref|ZP_06380345.1| two component transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] gi|291569796|dbj|BAI92068.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 236 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G ++ EIAEKL ++V TV ++ S KL A +R QA +A+R G+ Sbjct: 175 LTERELEVLELIVGGRSNAEIAEKLYITVGTVKTHVRSILNKLCADDRTQAAVRALRSGW 234 Query: 234 I 234 I Sbjct: 235 I 235 >gi|333025578|ref|ZP_08453642.1| putative two-component system response regulator TcsR2 [Streptomyces sp. Tu6071] gi|332745430|gb|EGJ75871.1| putative two-component system response regulator TcsR2 [Streptomyces sp. Tu6071] Length = 198 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+ A DG EIA++ GLS TV YL SA KL A NR A+ A G+ Sbjct: 138 LSAREAEVLEYAADGAPVAEIAQRAGLSPGTVRNYLSSAVTKLGAENRHAAVRTARSRGW 197 Query: 234 I 234 + Sbjct: 198 V 198 >gi|330891428|gb|EGH24089.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 222 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G G+++ EI EKLG++ T A++ KL A +R QA + + G Sbjct: 153 SLTPRERQVLGLVGGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALG 212 Query: 233 YIC 235 + Sbjct: 213 LVS 215 >gi|319653107|ref|ZP_08007209.1| hypothetical protein HMPREF1013_03824 [Bacillus sp. 2_A_57_CT2] gi|317395028|gb|EFV75764.1| hypothetical protein HMPREF1013_03824 [Bacillus sp. 2_A_57_CT2] Length = 199 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 36/60 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L DG + EIA++L + TV Y+ + KL+ NRI+AI ++ G+ Sbjct: 138 LTDREKEVLELIADGKNTREIADQLSIKTGTVRNYISAILDKLEVTNRIEAITQSKEKGW 197 >gi|163744442|ref|ZP_02151802.1| transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] gi|161381260|gb|EDQ05669.1| transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] Length = 239 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 6/119 (5%) Query: 117 GIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 G++ P+R H + S E+ +I +A + +D + Sbjct: 116 GVSIPIRDHVHGKAVLTLNSDLRIHEWRKYKRGIIADAIYLGCLLQSDLVAGIAGGEPGP 175 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 R L+ RE L+ A G T+ E A+ + +S TVN +L +A KLD N+ A+AKAIR Sbjct: 176 R-LSRREKEVLKWAAVGKTAWETAQIMTVSNSTVNHHLYNACAKLDVANKTHAVAKAIR 233 >gi|302526791|ref|ZP_07279133.1| predicted protein [Streptomyces sp. AA4] gi|302435686|gb|EFL07502.1| predicted protein [Streptomyces sp. AA4] Length = 71 Score = 48.1 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L ERE L+L +GY++ EIA +LG S HTV L +L NR A A A+R G Sbjct: 11 LGERELRVLRLVAEGYSNSEIAAELGWSEHTVKNALYDLMARLGVRNRAHAAAYAVRNGL 70 Query: 234 I 234 I Sbjct: 71 I 71 >gi|226356417|ref|YP_002786157.1| DNA-binding response regulator [Deinococcus deserti VCD115] gi|226318407|gb|ACO46403.1| putative DNA-binding response regulator [Deinococcus deserti VCD115] Length = 194 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE+ L L GY+++EIA+ LG+S TV +L KLDA +R +A+++A G Sbjct: 132 RLTPRESEVLPLLALGYSNKEIAKNLGVSPDTVKDHLARLYSKLDAGDRTEAVSRARSIG 191 Query: 233 YI 234 + Sbjct: 192 LL 193 >gi|331695587|ref|YP_004331826.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326950276|gb|AEA23973.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 219 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 50/104 (48%), Gaps = 8/104 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +GY +FT LA V+ E Y+ + D A LTERET L+L G Sbjct: 120 DGYPVFTPG---LAGLVLGE-----YRRLADEPARRPAGDPAVPALTERETGVLRLVAKG 171 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T+ I E+LGLS TV +++ + KL NR Q + AI G Sbjct: 172 LTARAIGERLGLSHRTVESHVQNTLRKLQLHNRAQLVRYAIEQG 215 >gi|51894297|ref|YP_076988.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857986|dbj|BAD42144.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 221 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 19/124 (15%) Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA 171 F G+A R GY++ +E+ L+ + A G Q+ T L+ F + SS A Sbjct: 95 FEGLAAGAR------GYLLKDAEYDELSQAIRTVAAGESLLQPQITTRVLKEFSRLSSMA 148 Query: 172 RN----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LTERET L+L G ++++IAEKL + TV ++ S KL A +R Sbjct: 149 ASRPKARPLVEPLTERETEVLRLMASGASNQDIAEKLFIGQGTVKHHVRSIFAKLGARDR 208 Query: 222 IQAI 225 + AI Sbjct: 209 VHAI 212 >gi|167566108|ref|ZP_02359024.1| probable transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Burkholderia oklahomensis EO147] Length = 236 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 41/70 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ +++A L+ RE L+ DG T++EI L +S+ TV + +A VKL A N+ A Sbjct: 166 KEMTASADKLSAREVEILRWHADGKTADEIGRILSISIDTVKFHTKNAVVKLGASNKTAA 225 Query: 225 IAKAIRFGYI 234 +A+A G + Sbjct: 226 VARAAIMGLL 235 >gi|13507195|gb|AAK28504.1| MupR [Pseudomonas fluorescens] Length = 234 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 76/170 (44%), Gaps = 14/170 (8%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D +FH + LP++W +E I Q +G+ P+ + G + Sbjct: 68 DPVVFHCLNSSLPLVWT---KENFINKPEQQLYEAASASGVCSGLCMPIHGPRGEFGMLN 124 Query: 134 FTSEFLMLANEVIIEAHG-ACYQVITDFL-ELFKKRSSAARN-------LTERETSCLQL 184 F ++ A+ +I + G + ++ D+L E F+K SAA LT RE CL+ Sbjct: 125 FITDEKSPAD--VIRSKGLPQFALMRDYLIESFQKIQSAAEKEVEKPPKLTARELECLKW 182 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EI+ L + TVN ++ + K +A +R A+ IR G + Sbjct: 183 VAAGKTSWEISRILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLV 232 >gi|298247256|ref|ZP_06971061.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549915|gb|EFH83781.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1002 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S R L+ERE LQL G ++++IA+ L ++V T+ ++ KLD NRIQ +A+A Sbjct: 937 SRPRGLSEREYEILQLVARGMSNQDIADTLIVAVSTIKVHVRHLCQKLDVQNRIQMVARA 996 Query: 229 IRFGYI 234 G + Sbjct: 997 REKGIV 1002 >gi|271964734|ref|YP_003338930.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507909|gb|ACZ86187.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 218 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++TERET L L G +++EIAE+L LS TV ++G KL+ +R QAI A G Sbjct: 153 DITERETEVLALIAQGRSNQEIAEELVLSEQTVKTHVGRILAKLNLRDRAQAIVHAYETG 212 Query: 233 YI 234 + Sbjct: 213 LV 214 >gi|62822972|gb|AAY15207.1| transcriptional activator PhzR [Pseudomonas chlororaphis] Length = 241 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ DG TSEEI +G+ TVN + + K+ A NR+QA++ A+ GYI Sbjct: 184 RECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241 >gi|325271881|ref|ZP_08138339.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324103000|gb|EGC00389.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 129 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L ERE C+ G TS+E A +LG++ T++ L +A+ KL + R Q +A+A+R G Sbjct: 16 GLAERELQCVMAVACGLTSKEAARELGIAKDTIDKRLLAASTKLGVIKRAQLVAEAMRRG 75 Query: 233 YI 234 I Sbjct: 76 LI 77 >gi|239994527|ref|ZP_04715051.1| DNA-binding response regulator, LuxR family protein [Alteromonas macleodii ATCC 27126] Length = 206 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+++E S L+LA +G ++ IA+ L LS TV YL A KLDA NR+ A A + G+ Sbjct: 146 LSQKEMSALKLASEGLKTQGIAQSLFLSEGTVRNYLSEAISKLDATNRVDAARIAKQKGW 205 Query: 234 I 234 + Sbjct: 206 L 206 >gi|33326387|gb|AAQ08608.1| putative transcription regulator [Agrobacterium vitis] Length = 248 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G TS E+++ L +S HTV+ Y+ KL+A NR +A A R G Sbjct: 187 LTRRELEILNYLGEGMTSNEMSKLLEISNHTVDWYVNELQDKLNAKNRQHMVAIAYRLGL 246 Query: 234 I 234 I Sbjct: 247 I 247 >gi|290959189|ref|YP_003490371.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260648715|emb|CBG71828.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 200 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SS LT RE L+LA DG EIAE+ LS TV YL SA KL NR A+ Sbjct: 134 SSGDSPLTAREAEVLELAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGVENRHAAVRL 193 Query: 228 AIRFGYI 234 A G++ Sbjct: 194 ARERGWV 200 >gi|333023628|ref|ZP_08451692.1| putative LuxR family transcriptional regulator [Streptomyces sp. Tu6071] gi|332743480|gb|EGJ73921.1| putative LuxR family transcriptional regulator [Streptomyces sp. Tu6071] Length = 290 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 38/69 (55%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + A LT RE L + +G T+ +A +LGL TV AYL +A KL A R +A+A Sbjct: 222 RDTQAPPLTPREVEVLVIVAEGATNAAVASRLGLRPETVKAYLRAAMRKLGARTRGEAVA 281 Query: 227 KAIRFGYIC 235 A R G + Sbjct: 282 VARRAGVVA 290 >gi|209863456|gb|ACI88828.1| PhzR [Pseudomonas sp. G5(2008b)] Length = 241 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ DG TSEEI +G+ TVN + + K+ A NR+QA++ A+ GYI Sbjct: 184 RECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241 >gi|167565578|ref|ZP_02358494.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] Length = 239 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|148560233|ref|YP_001258220.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840] gi|148371490|gb|ABQ61469.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella ovis ATCC 25840] Length = 235 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 17/117 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RNLT 175 L F ++G + E ML ++ Q++T+ L L +++ A +LT Sbjct: 126 LSFVRSGPALTPGEISMLRRQL---------QMVTNLLHLSMYERVDVPAISCIGDVSLT 176 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE L+ +G T+E I L +S TVN ++ + KL AVN+++A+AKA FG Sbjct: 177 LREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVKAVAKARTFG 233 >gi|197116849|ref|YP_002137276.1| LuxR family helix-turn-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197086209|gb|ACH37480.1| helix-turn-helix transcriptional response regulator, LuxR family [Geobacter bemidjiensis Bem] Length = 216 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 8/112 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKR-----SSAARNLTERETS 180 NGYV+ S F LA + A G Y +V T ++ + +R + NL++RE Sbjct: 100 NGYVLKDSAFAELATAIRAVATGETYLPSRVTTLLIKEYLQRIPDEVPATYENLSQRERE 159 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG ++EIA G+SV TV S KLD + + A+R G Sbjct: 160 ILQLIADGRNAKEIAFSFGVSVKTVENQRHSIMKKLDLFSIAELTKYAVRQG 211 >gi|13471370|ref|NP_102936.1| nitrate/nitrite regulatory protein [Mesorhizobium loti MAFF303099] gi|14022112|dbj|BAB48722.1| nitrate/nitrite regulatory protein [Mesorhizobium loti MAFF303099] Length = 206 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 5/105 (4%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 VRLG GY + ++ + ++ AHG ++ ++++ K + LT RE Sbjct: 93 VRLG--AQGYCFQFDDPAIIFDTILAVAHG---RICIPYIDINKVNDTPLAQLTVREREL 147 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L + DG+T+ +IA + G+S +TV +L + KLD NR A+A Sbjct: 148 LAVLSDGWTNLQIATRTGISENTVKYHLKNLYDKLDVRNRAMAVA 192 >gi|307244636|ref|ZP_07526740.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492017|gb|EFM64066.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 216 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 36/58 (62%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ + + L+ERE L+L DG +++EIA KL LS TV Y+ S VKLD +R Q Sbjct: 151 KKENLTKVLSEREIDVLELIADGLSNKEIAGKLYLSEGTVRNYISSILVKLDLRDRTQ 208 >gi|298247435|ref|ZP_06971240.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550094|gb|EFH83960.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 39/69 (56%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RSS L+ERE L+ G S+EIA +LG+S+ TV A+L S KL +R A+A Sbjct: 165 RSSGEGELSERELEVLRKVASGERSKEIAAQLGISLRTVGAHLTSIYTKLGVDSRTSAVA 224 Query: 227 KAIRFGYIC 235 A+ G + Sbjct: 225 VALERGLLS 233 >gi|167572684|ref|ZP_02365558.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 239 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|116250468|ref|YP_766306.1| GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255116|emb|CAK06190.1| regulator of flagellar and motility genes, also regulates rem [Rhizobium leguminosarum bv. viciae 3841] Length = 262 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R Sbjct: 202 LTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVR 258 >gi|254292885|ref|YP_003058908.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254041416|gb|ACT58211.1| transcriptional regulator, LuxR family [Hirschia baltica ATCC 49814] Length = 249 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE CL G + I ++L ++ TVN ++ +A KL A A+AKAIR + Sbjct: 189 LTDRERDCLAFLARGLRPDRIGDELSIATVTVNMHIRNARYKLKATTNAHAVAKAIRLNF 248 Query: 234 I 234 I Sbjct: 249 I 249 >gi|228472164|ref|ZP_04056930.1| transcriptional regulator, LuxR family [Capnocytophaga gingivalis ATCC 33624] gi|228276367|gb|EEK15091.1| transcriptional regulator, LuxR family [Capnocytophaga gingivalis ATCC 33624] Length = 216 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +TD + F ++ LT RE L LA +G S+EI+EKL +SVHTVN + + KL Sbjct: 147 LTDEIVPFAIETATDTLLTPREREILALAKEGMFSKEISEKLNISVHTVNRHRQNILEKL 206 Query: 217 DAVNRIQAI 225 N I+AI Sbjct: 207 QVDNMIEAI 215 >gi|46371737|gb|AAS90557.1| transcriptional activator [Burkholderia pseudomallei] Length = 239 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G Sbjct: 176 LTHRERKVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|83716915|ref|YP_439706.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|167578146|ref|ZP_02371020.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167616276|ref|ZP_02384911.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257142845|ref|ZP_05591107.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650740|gb|ABC34804.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 239 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|291445985|ref|ZP_06585375.1| luxR family two component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348932|gb|EFE75836.1| luxR family two component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 200 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA DG EIAE+ LS TV YL SA K+ A NR A+ A G+ Sbjct: 140 LTAREAEVLELAADGAPVAEIAERASLSQGTVRNYLSSAASKIGAENRHTAVRLARERGW 199 Query: 234 I 234 + Sbjct: 200 V 200 >gi|284030413|ref|YP_003380344.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809706|gb|ADB31545.1| transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 208 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G G T++E+A+ L LS TV YL K A +RI+AI KA G+ Sbjct: 148 LTERECEVLRLIGTGATAQEVAQILCLSPGTVRNYLSRILSKTGARSRIEAIRKAQDAGW 207 Query: 234 I 234 I Sbjct: 208 I 208 >gi|239942524|ref|ZP_04694461.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988988|ref|ZP_04709652.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 206 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA DG EIAE+ LS TV YL SA K+ A NR A+ A G+ Sbjct: 146 LTAREAEVLELAADGAPVAEIAERASLSQGTVRNYLSSAASKIGAENRHTAVRLARERGW 205 Query: 234 I 234 + Sbjct: 206 V 206 >gi|262283887|gb|ACY40751.1| VisN [Rhizobium leguminosarum bv. viciae] Length = 262 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R Sbjct: 202 LTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVR 258 >gi|156744333|ref|YP_001434462.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235661|gb|ABU60444.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 231 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGL 200 N++++ + QV+ F ++ + + + L+ RE L+L G T++EIA+ L + Sbjct: 128 NDLVLSSPDVAAQVLNAFRQMAAEEDTQSIYSPLSPRELQVLELVAAGRTNKEIAKVLDI 187 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV ++ S KL +R QA+ A+R G+I Sbjct: 188 SNQTVKNHISSILRKLAVNDRTQAVVYAMRRGWI 221 >gi|299532904|ref|ZP_07046291.1| ATP-dependent transcription regulator LuxR [Comamonas testosteroni S44] gi|298719128|gb|EFI60098.1| ATP-dependent transcription regulator LuxR [Comamonas testosteroni S44] Length = 857 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 39/67 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K+ ++RE LQ G ++EIA++L L+ +TV YL +KLDA NR QA Sbjct: 787 QKKPRHIGTFSQRERELLQALALGGRNQEIAQRLQLTENTVKWYLKRLYMKLDAHNRTQA 846 Query: 225 IAKAIRF 231 IA+A R Sbjct: 847 IAQARRL 853 >gi|302559849|ref|ZP_07312191.1| LuxR family DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477467|gb|EFL40560.1| LuxR family DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 230 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 50/85 (58%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I ++L+L ++ R+ A+ +T+RE L+L +G+TS++IA L +S TV + Sbjct: 144 GAVNALIHNYLDLAREGRALPAKAITDREEEILKLVAEGHTSQQIAGLLVISPKTVERHR 203 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G I Sbjct: 204 ANLLAKLGLRDRLELTRYAIRVGLI 228 >gi|290957607|ref|YP_003488789.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260647133|emb|CBG70232.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 204 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ A DG T+ E+AE L LS TV YL +A KL NR +A+ A G+ Sbjct: 144 LTDREREVLRAAADGSTNAELAEALHLSPGTVRNYLSTAIQKLAVRNRTEAVRTAREKGW 203 Query: 234 I 234 + Sbjct: 204 L 204 >gi|21224466|ref|NP_630245.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256784341|ref|ZP_05522772.1| two-component system response regulator [Streptomyces lividans TK24] gi|289768220|ref|ZP_06527598.1| two-component system response regulator [Streptomyces lividans TK24] gi|4007689|emb|CAA22374.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289698419|gb|EFD65848.1| two-component system response regulator [Streptomyces lividans TK24] Length = 219 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L+L DG ++ EIA L +S TV ++ KLD +R+QA+ A R G Sbjct: 158 LTPRETEVLRLIADGLSNSEIAAALVISPETVKTFVSRILTKLDLRDRVQAVVFAYRHGL 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|83747411|ref|ZP_00944450.1| SolR [Ralstonia solanacearum UW551] gi|207744773|ref|YP_002261165.1| transcriptional activator protein solr [Ralstonia solanacearum IPO1609] gi|83725868|gb|EAP73007.1| SolR [Ralstonia solanacearum UW551] gi|206596183|emb|CAQ63110.1| transcriptional activator protein solr [Ralstonia solanacearum IPO1609] Length = 236 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G Sbjct: 176 LTAREREVLCWTGEGKTAYEIGQILHISERTVNFHVNNVLLKLAATNKVQAVVKAIATGL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|300702552|ref|YP_003744152.1| transcriptional activator protein solr [Ralstonia solanacearum CFBP2957] gi|299070213|emb|CBJ41504.1| Transcriptional activator protein solR [Ralstonia solanacearum CFBP2957] Length = 236 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G Sbjct: 176 LTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|218295514|ref|ZP_03496327.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] gi|218244146|gb|EED10672.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] Length = 192 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G + +E+A+ LGLS TV +L + KL+A NR++A+ KA G Sbjct: 130 SLTPREGEVLALLAQGLSVKEMAKALGLSPDTVKDHLENLYAKLEARNRVEALEKARSLG 189 Query: 233 YI 234 ++ Sbjct: 190 FL 191 >gi|302560948|ref|ZP_07313290.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] gi|302478566|gb|EFL41659.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] Length = 341 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 10/83 (12%) Query: 162 ELFKKRSSAARNLTE----------RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 E F +R +A R L R L+L +G T + IA +LG SV TV + + Sbjct: 259 ERFWERGAAVRQLRRTPGTPTARRPRTEIVLRLLAEGLTDDAIARRLGCSVRTVRNDVAA 318 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 A V LDA +R QA A+A++ G I Sbjct: 319 AMVALDARSRFQAGARAMQVGLI 341 >gi|269124429|ref|YP_003297799.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309387|gb|ACY95761.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 244 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 44/84 (52%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 GA +I +LE ++ LT RE L+L +G++S EIA+ L +SV TV + Sbjct: 159 GAISVLIRSYLEQARQGEEPETPLTPREEEILKLVAEGHSSREIADTLFISVKTVERHRA 218 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G I Sbjct: 219 NILAKLGMKDRLELTRYAIRTGLI 242 >gi|332531975|ref|ZP_08407859.1| Two-component system regulatory protein [Pseudoalteromonas haloplanktis ANT/505] gi|332038602|gb|EGI75045.1| Two-component system regulatory protein [Pseudoalteromonas haloplanktis ANT/505] Length = 204 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 38/64 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT++E L+LA DG + +IA++L +S T YL A KL+A NRI A A + Sbjct: 141 ADPLTDKERKALKLASDGLKTSDIAKQLFISEGTTRNYLSDAIAKLNATNRIDAARIAKQ 200 Query: 231 FGYI 234 G++ Sbjct: 201 KGWL 204 >gi|167897824|ref|ZP_02485226.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 7894] Length = 239 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|90422223|ref|YP_530593.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104237|gb|ABD86274.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 245 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 3/76 (3%) Query: 162 ELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +L R AR L+ RE + A G T+ + A L +S TVN ++ SA KLDA Sbjct: 168 QLMTMREPPARRQTTLSPREREVVAWAAVGKTAWDTARILAISTDTVNKHMASAMRKLDA 227 Query: 219 VNRIQAIAKAIRFGYI 234 + QA+ ++IR G I Sbjct: 228 CTKTQAVVESIRRGEI 243 >gi|53717160|ref|YP_105961.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia mallei ATCC 23344] gi|53721911|ref|YP_110896.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|67643283|ref|ZP_00442030.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei GB8 horse 4] gi|76818142|ref|YP_337635.1| BpsR [Burkholderia pseudomallei 1710b] gi|121598108|ref|YP_989940.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei SAVP1] gi|124382764|ref|YP_001024423.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10229] gi|126442328|ref|YP_001062292.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 668] gi|126445689|ref|YP_001078154.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10247] gi|126458533|ref|YP_001075258.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106a] gi|134278985|ref|ZP_01765698.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 305] gi|167000171|ref|ZP_02265991.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei PRL-20] gi|167723232|ref|ZP_02406468.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei DM98] gi|167742204|ref|ZP_02414978.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 14] gi|167819378|ref|ZP_02451058.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 91] gi|167827752|ref|ZP_02459223.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 9] gi|167849226|ref|ZP_02474734.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei B7210] gi|167906168|ref|ZP_02493373.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei NCTC 13177] gi|167914491|ref|ZP_02501582.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 112] gi|167922390|ref|ZP_02509481.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei BCC215] gi|217418339|ref|ZP_03449846.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 576] gi|226197543|ref|ZP_03793118.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei Pakistan 9] gi|237507418|ref|ZP_04520133.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei MSHR346] gi|242313785|ref|ZP_04812802.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106b] gi|254174155|ref|ZP_04880817.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei ATCC 10399] gi|254183341|ref|ZP_04889933.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1655] gi|254193094|ref|ZP_04899529.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei S13] gi|254200806|ref|ZP_04907171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei FMH] gi|254204776|ref|ZP_04911129.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei JHU] gi|254263057|ref|ZP_04953922.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1710a] gi|254300240|ref|ZP_04967686.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 406e] gi|254357025|ref|ZP_04973300.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei 2002721280] gi|37223137|gb|AAQ90167.1| transcriptional activator [Burkholderia pseudomallei] gi|40646736|gb|AAR88244.1| BpsR [Burkholderia pseudomallei] gi|43469096|gb|AAS46624.1| BpsR [Burkholderia pseudomallei] gi|52212325|emb|CAH38349.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|52423130|gb|AAU46700.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia mallei ATCC 23344] gi|76582615|gb|ABA52089.1| BpsR [Burkholderia pseudomallei 1710b] gi|121225906|gb|ABM49437.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei SAVP1] gi|124290784|gb|ABN00054.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10229] gi|126221819|gb|ABN85324.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 668] gi|126232301|gb|ABN95714.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106a] gi|126238543|gb|ABO01655.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10247] gi|134249404|gb|EBA49485.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 305] gi|147748418|gb|EDK55493.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei FMH] gi|147754362|gb|EDK61426.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei JHU] gi|148026052|gb|EDK84175.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei 2002721280] gi|157809975|gb|EDO87145.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 406e] gi|160695201|gb|EDP85171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei ATCC 10399] gi|169649848|gb|EDS82541.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei S13] gi|184213874|gb|EDU10917.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1655] gi|217397643|gb|EEC37658.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 576] gi|225930152|gb|EEH26164.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei Pakistan 9] gi|234999623|gb|EEP49047.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei MSHR346] gi|238524594|gb|EEP88026.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei GB8 horse 4] gi|242137024|gb|EES23427.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106b] gi|243063823|gb|EES46009.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei PRL-20] gi|254214059|gb|EET03444.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1710a] Length = 239 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|222148404|ref|YP_002549361.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|68449749|gb|AAY97861.1| AvsR [Agrobacterium vitis] gi|221735392|gb|ACM36355.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 246 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ G + E A LG+S TV ++ +A KLDAV+ QA+AKA++ G Sbjct: 179 TLTRREQETLRWTAAGKSYWETAVILGISERTVRYFMANARTKLDAVSNTQAVAKALQRG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|282865368|ref|ZP_06274420.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282559841|gb|EFB65391.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 218 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------LTE 176 LG +G++I S +L + A G + L ++ ++A L+E Sbjct: 97 LGEGASGFLIKDSGPALLVEAIRAAASGEALVSPAITVRLLRRLNNAVPTSREPHTALSE 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++L G T+ EIA +L +SV TV +LG+ KL A NR++ A A G + Sbjct: 157 REKDLVRLVARGLTNAEIATELTISVGTVKTHLGNVQTKLSARNRVEIAAWAWESGLV 214 >gi|158336971|ref|YP_001518146.1| LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158307212|gb|ABW28829.1| transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 87 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 38/62 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE ++L G +EEI+++L +S TV+ ++ + K D NR+ + A+++G Sbjct: 12 LSERELQVIELVASGLKNEEISQRLDISKRTVDNHISNILTKTDTDNRVALVRWALQWGK 71 Query: 234 IC 235 +C Sbjct: 72 VC 73 >gi|126640216|ref|YP_001083200.1| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978] Length = 198 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ +G TS EIA+ LG++ TVN +L ++ KL+ N+I A +A+ G Sbjct: 138 LTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLG 196 >gi|312880693|ref|ZP_07740493.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] gi|310783984|gb|EFQ24382.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] Length = 211 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 1/107 (0%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 GYV+ TS L + + A G + + ++ E + ++ RE L A G Sbjct: 100 RGYVLKTSPAETLCRAIRVVAQGGLF-LDSEVAEAMGGDAFVPEPISPREREVLVQAAQG 158 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +S+EIA KL +S TV +L S K+ A N+ +A+ A+R+G + Sbjct: 159 LSSKEIAAKLYISERTVQTHLASIYDKVGAKNKTEAMLLALRYGLVT 205 >gi|291007043|ref|ZP_06565016.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 198 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 159 DFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 D+L E+ R A LT RE L+L DG + EIA+KL S TV + T +L Sbjct: 121 DYLQREVLTPRGLNASGLTTREIDVLRLMADGLDTAEIAQKLCYSERTVKNVVYGVTSRL 180 Query: 217 DAVNRIQAIAKAIRFGYI 234 + NR A+A A+R G I Sbjct: 181 NLRNRPHAVAYAMRAGVI 198 >gi|268322279|emb|CBH32801.1| putative regulatory gene [Streptomyces sp. C23201NS3] Length = 201 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 39/78 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + DF S LTER+ L+LA G EIA +L LS TV YL S T KL Sbjct: 124 VIDFDLAVSAWQSPPPPLTERQLEILRLAAAGDGVPEIAARLHLSPGTVRNYLSSVTTKL 183 Query: 217 DAVNRIQAIAKAIRFGYI 234 +A R+ A+ A G++ Sbjct: 184 NARTRMDAVRIAADAGWL 201 >gi|86356298|ref|YP_468190.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280400|gb|ABC89463.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 234 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 39/74 (52%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I FL + LT+RE CL +G TS+EIA LG+S +T+N Y+ S K Sbjct: 157 IASFLRCGGAKVDRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKT 216 Query: 217 DAVNRIQAIAKAIR 230 R +AIA A+R Sbjct: 217 ATKTRSEAIAFAVR 230 >gi|9297032|sp|O30919|SOLR2_RALSO RecName: Full=Transcriptional activator protein solR gi|2444467|gb|AAC45947.1| SolR [Ralstonia solanacearum] Length = 236 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G Sbjct: 176 LTTREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|312131027|ref|YP_003998367.1| two component transcriptional regulator, luxr family [Leadbetterella byssophila DSM 17132] gi|311907573|gb|ADQ18014.1| two component transcriptional regulator, LuxR family [Leadbetterella byssophila DSM 17132] Length = 210 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 41/69 (59%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +++S LT+RET L L + Y+++EIA+KL LS+ TV A+ S KLD N + Sbjct: 141 RKNSIEVKLTKRETEILALIANEYSNQEIADKLFLSIRTVEAHRNSLNQKLDIKNTAGLV 200 Query: 226 AKAIRFGYI 234 +A+ G I Sbjct: 201 KEALLRGLI 209 >gi|315506070|ref|YP_004084957.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412689|gb|ADU10806.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 603 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L DG ++ EIA +L +S TV Y+ KLD +R+QA+ A R G Sbjct: 541 GLTPRELEVLRLIADGLSNSEIAARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRTG 600 Query: 233 YI 234 + Sbjct: 601 LV 602 >gi|269925757|ref|YP_003322380.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789417|gb|ACZ41558.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 1648 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 55/101 (54%), Gaps = 3/101 (2%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTS- 191 + EF L VI ++ ++ F + RSS+ + LT+RE LQL +G TS Sbjct: 1544 SEEFFQLLRNVIRGEPAITPRLAGKLIDEFSRPVRSSSLQMLTDREQEILQLLVNGVTST 1603 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++++ +LG+S HTV +L + KL +R Q +A A++ G Sbjct: 1604 KDLSRQLGVSEHTVKYHLRNILSKLHLQSRAQVVAWAVQHG 1644 >gi|70732431|ref|YP_262193.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68346730|gb|AAY94336.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 911 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE S LQL G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 849 SLSSRELSVLQLIAQGCSNQEISERLFISLHTVKTHASHINSKLGVERRTQAVARAQELG 908 Query: 233 YI 234 + Sbjct: 909 LL 910 >gi|269837299|ref|YP_003319527.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786562|gb|ACZ38705.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 219 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE LQ DG + +EIAE+L +S TV ++ + KLDA +R+QA+ A R Sbjct: 156 LTDREREVLQALADGLSDKEIAERLYISPATVRTHITAILGKLDANSRLQAVVVAARHNL 215 Query: 234 IC 235 + Sbjct: 216 VT 217 >gi|110678944|ref|YP_681951.1| transcriptional activator protein RaiR, putative [Roseobacter denitrificans OCh 114] gi|109455060|gb|ABG31265.1| Transcriptional activator protein RaiR, putative [Roseobacter denitrificans OCh 114] Length = 239 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 37/70 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K ++ L+ RE + L GY ++AE L +S HT+ Y+ SA KL A N A+ Sbjct: 169 KTPEQSQALSPREIDAMTLLAIGYNRAQVAETLSISEHTLRVYIESARFKLGAANTTHAV 228 Query: 226 AKAIRFGYIC 235 A+A+ G I Sbjct: 229 ARALSRGLIV 238 >gi|37524335|ref|NP_927679.1| hypothetical protein plu0320 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783758|emb|CAE12615.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 242 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + + RE L+ DG TS EI+ + ++ TV+ +L + KLD N+ QAIAKA G Sbjct: 181 SFSNRELEVLRYTADGMTSIEISSTICVTKSTVDFHLMNIVKKLDCKNKFQAIAKAALLG 240 Query: 233 YI 234 YI Sbjct: 241 YI 242 >gi|167736315|dbj|BAG07414.1| AHL-dependent transcriptional regulator [Gluconacetobacter intermedius] Length = 236 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 21/158 (13%) Query: 86 PIIWQSIQ-----EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 P W I+ E+ +I + ++ G+ PV H + VI+ F Sbjct: 89 PYFWHEIKNINKAEKKIIRDVSEFGIK--------KGLTIPV----HTHDRVIYAICFAF 136 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAE 196 + E + F+ +KK A LT RE CL G +S E Sbjct: 137 TDKNIDREIELYLRALSNFFITGYKKLDEPADMSLPILTPREKECLTWTAKGKSSWETGM 196 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G+S TVN ++ +A +KL NRI + +AI G I Sbjct: 197 IVGVSERTVNFHINNALLKLKCTNRIMGVVRAICAGLI 234 >gi|241203092|ref|YP_002974188.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856982|gb|ACS54649.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 248 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R Sbjct: 188 LTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVR 244 >gi|297566899|ref|YP_003685871.1| LuxR family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851348|gb|ADH64363.1| two component transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 217 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/92 (41%), Positives = 48/92 (52%), Gaps = 7/92 (7%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGL 200 EV+++A A Q+I DF KR S + L+ERE L+L GYT+ EIA +L L Sbjct: 122 EVLLDAELA-EQIIQDF---KAKRESVPKPHAELSEREVQILKLVAQGYTNLEIAGELSL 177 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 S TV L KL NR QA A+R G Sbjct: 178 SEKTVRNRLSEIFQKLHLNNRTQAALYALREG 209 >gi|256819971|ref|YP_003141250.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM 7271] gi|256581554|gb|ACU92689.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM 7271] Length = 218 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 40/69 (57%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +TD + F S+ LT RE L LA +G S+EI+EKL +SVHTVN + + KL Sbjct: 148 LTDEIVPFAIESATNTLLTPREREILALAKEGMFSKEISEKLNISVHTVNRHRQNILEKL 207 Query: 217 DAVNRIQAI 225 N I+AI Sbjct: 208 QVGNIIEAI 216 >gi|238783332|ref|ZP_04627356.1| transcription regulator SdiA [Yersinia bercovieri ATCC 43970] gi|238715755|gb|EEQ07743.1| transcription regulator SdiA [Yersinia bercovieri ATCC 43970] Length = 238 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L + DG TS EIA K+ +S TV+ ++ + KL+ N+ QAI+KA+ G Sbjct: 178 LTKRELMILMFSVDGMTSHEIAGKIFISKSTVDFHMLNIIKKLNCKNKFQAISKALIMGL 237 Query: 234 I 234 I Sbjct: 238 I 238 >gi|78062060|ref|YP_371968.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383] gi|77969945|gb|ABB11324.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. 383] Length = 889 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 26/55 (47%), Positives = 36/55 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L++RE L+L G ++ EI+EKL LS +TV +L + +KLD NR QAI KA Sbjct: 830 LSQREQEILRLLCSGASNREISEKLFLSENTVKFHLKNVYLKLDVKNRAQAILKA 884 >gi|320006700|gb|ADW01550.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 206 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 12/105 (11%) Query: 141 LANEVIIEAHGACYQVITDFLE-LFKKR----------SSAARNLTERETSCLQLAGDGY 189 LA+ V+ A G C V D L+ L ++R S A L+ERE + L+L DG+ Sbjct: 103 LAHAVLAAAGGDC-AVPPDLLDGLLEQRAEGADPGVADSWGAAGLSERERAVLRLVADGH 161 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + IA++L SV TV L + T + NR A+A +R G + Sbjct: 162 ETSAIADELCYSVRTVTTVLHNVTQRFRLKNRAHAVAYVLRAGLL 206 >gi|254485722|ref|ZP_05098927.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. GAI101] gi|214042591|gb|EEB83229.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. GAI101] Length = 239 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A+ L+ RE + L GY ++A+ L +S HT+ Y+ SA KL A+N A+A+A+ Sbjct: 174 AQALSPREIDAMTLLAIGYNRAQVADSLSISEHTLRVYIESARFKLGAMNTTHAVARALS 233 Query: 231 FGYI 234 G I Sbjct: 234 RGLI 237 >gi|254444769|ref|ZP_05058245.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198259077|gb|EDY83385.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 211 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 EA+ Q IT+ K + + + LT RET LQ+ G+GY+S+EIA LSV T++A Sbjct: 127 EAYKLLRQPITN-----KDYNDSLKMLTPRETDVLQMVGEGYSSKEIARSFNLSVRTIDA 181 Query: 208 YLGSATVKLD 217 + + KL+ Sbjct: 182 HRSNIMRKLN 191 >gi|146306170|ref|YP_001186635.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] gi|145574371|gb|ABP83903.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] Length = 868 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 39/67 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ L+ RE + LQL G +++EIA++L +S+HTV + VKL R QA+A Sbjct: 800 SAGTALLSSRELAVLQLIAQGCSNQEIADRLFISLHTVKTHARRINVKLGVQRRTQAVAM 859 Query: 228 AIRFGYI 234 A +G + Sbjct: 860 AKAYGLM 866 >gi|78059869|ref|YP_366444.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383] gi|77964419|gb|ABB05800.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. 383] Length = 932 Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LT +E LQL GY++ +AEKL +S TV +L + KL+ NR A+A R Sbjct: 868 AESLTRKELRVLQLLAQGYSNGALAEKLFVSDSTVRTHLRNINAKLNVPNRTSAVAAGRR 927 Query: 231 FGYI 234 G + Sbjct: 928 LGLV 931 >gi|152977535|ref|YP_001377052.1| two component LuxR family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|114152690|gb|ABI52594.1| two-component response regulator [Bacillus cytotoxicus] gi|152026287|gb|ABS24057.1| two component transcriptional regulator, LuxR family [Bacillus cytotoxicus NVH 391-98] Length = 200 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L LA +G T+ +IA+ L LS TV Y+ KL+A NRI+AI A G+ Sbjct: 140 LSDREREVLLLAKEGKTTNDIAKALYLSPGTVRNYISEVLTKLNAKNRIEAITIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|260557627|ref|ZP_05829841.1| transcriptional activator protein phzR [Acinetobacter baumannii ATCC 19606] gi|260408800|gb|EEX02104.1| transcriptional activator protein phzR [Acinetobacter baumannii ATCC 19606] Length = 238 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ +G TS EIA+ LG++ TVN +L ++ KL+ N+I A +A+ G Sbjct: 178 LTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLG 236 >gi|226307737|ref|YP_002767697.1| LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226186854|dbj|BAH34958.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 239 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 EV+ + AC +V+ D + L + +L+ RE LQL G + EIAE+L +S Sbjct: 152 REVVAASSAACSRVVGDQVALDRV------HLSPREIQVLQLVARGAGNVEIAEELFVSR 205 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L + VK +R+QA +A ++G I Sbjct: 206 RTVATHLENIFVKTGTNSRVQAAVRAAKWGLI 237 >gi|184156458|ref|YP_001844797.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii ACICU] gi|183208052|gb|ACC55450.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii ACICU] Length = 238 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ +G TS EIA+ LG++ TVN +L ++ KL+ N+I A +A+ G Sbjct: 178 LTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLG 236 >gi|192290718|ref|YP_001991323.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192284467|gb|ACF00848.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 240 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++R A LT RE L +G T EIA L +S H V+ K VNR+Q Sbjct: 169 LRERPPAPVTLTIREADVLHWIAEGKTDWEIARILQVSEHLVDKVARQIKSKFQVVNRVQ 228 Query: 224 AIAKAIRFGYI 234 A+ +A+R G I Sbjct: 229 AVVQAMRAGVI 239 >gi|119469813|ref|ZP_01612651.1| putative csg operon transcription regulator (LuxR family) protein [Alteromonadales bacterium TW-7] gi|119446796|gb|EAW28068.1| putative csg operon transcription regulator (LuxR family) protein [Alteromonadales bacterium TW-7] Length = 229 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 3/105 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK---RSSAARNLTERETSCLQLAG 186 G V TS+ L +VI +A V + F L + +LT+RE S + L Sbjct: 116 GLVRVTSDELWFTRKVISKAFSDILLVASSFNSLKDDITLKQDDYAHLTKREKSVIHLIA 175 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G ++ IA+KL +S HTV +L SA K ++ NRI+ A R+ Sbjct: 176 QGASNNTIADKLNISDHTVKTHLYSAFKKTNSRNRIELANWAQRY 220 >gi|91976651|ref|YP_569310.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] gi|91683107|gb|ABE39409.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] Length = 240 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++R A LT RE L +G T EIA L +S H V+ K VNR+Q Sbjct: 169 LRERPPAPVTLTIREADVLHWIAEGKTDWEIARILQVSEHLVDKVARQIKSKFQVVNRVQ 228 Query: 224 AIAKAIRFGYI 234 A+ +A+R G I Sbjct: 229 AVVQAMRAGVI 239 >gi|229818737|ref|YP_002880263.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564650|gb|ACQ78501.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 224 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 36/63 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G T+ EIA +L L V TV ++G+ KL A +R+QA A G Sbjct: 159 RLTEREEEVLRLVAAGMTNAEIAAQLWLGVETVKTHVGNVLAKLGARDRLQAAIVAYESG 218 Query: 233 YIC 235 ++ Sbjct: 219 FVV 221 >gi|254511393|ref|ZP_05123460.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium KLH11] gi|221535104|gb|EEE38092.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium KLH11] Length = 239 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 37/70 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ R L+ RE + L GY+ ++A L +S HT+ AY+ SA KL A N AI Sbjct: 169 RQPETTRALSPREIDAMTLLALGYSRAQVAHSLSISEHTLRAYIESARSKLGAQNTTHAI 228 Query: 226 AKAIRFGYIC 235 A A+ G I Sbjct: 229 ATALSRGLIV 238 >gi|91974882|ref|YP_567541.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] gi|91681338|gb|ABE37640.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB5] Length = 242 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 38/63 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT RE L A G T+ EI+ L ++ TV +L A+ KL+AVNR A+AKA+ F Sbjct: 178 RLLTSRECEILLWAAHGKTAWEISIILHIAERTVKFHLIEASKKLNAVNRTAAVAKALAF 237 Query: 232 GYI 234 G I Sbjct: 238 GLI 240 >gi|319939711|ref|ZP_08014069.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] gi|319811129|gb|EFW07438.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] Length = 199 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+ +E LQ A G +S+EIA+KL LS T+ Y+ S KL A NR Sbjct: 127 ELMEAMMTSKNPLSNQEILVLQAAARGLSSKEIAQKLYLSNGTIRNYMSSILTKLTAENR 186 Query: 222 IQAIAKAIRFGYI 234 ++A+ A G+I Sbjct: 187 LEAVRIAQENGWI 199 >gi|302865544|ref|YP_003834181.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302568403|gb|ADL44605.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 216 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A Q++ + R AAR LTERE L+L G ++ EIA +L + V TV ++G Sbjct: 130 AAIRQLVDTYGRRDGDRLRAAR-LTEREAEVLRLMAAGLSNPEIAARLVVGVETVKTHVG 188 Query: 211 SATVKLDAVNRIQAIAKAIRFGYIC 235 + KL +R QA+ A G++ Sbjct: 189 NVLAKLGVRDRTQAVVAAYESGFVI 213 >gi|209551411|ref|YP_002283328.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537167|gb|ACI57102.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 251 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L +G TS EI + L +S HTV+ Y+ KL A NR QA+A A R Sbjct: 190 LTRREMEILHYLAEGMTSMEIGKVLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHRL 249 Query: 234 IC 235 I Sbjct: 250 IS 251 >gi|170743557|ref|YP_001772212.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197831|gb|ACA19778.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 245 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ RE LQ A DG + +EIA+ +G+S H +L + KL +R A+A +R Sbjct: 181 AEPLSPRERESLQWAADGKSDQEIADAMGISAHGAIRHLRAVRRKLGTTSRAHAVALGLR 240 Query: 231 FGYI 234 G I Sbjct: 241 LGII 244 >gi|300693076|ref|YP_003749049.1| two component heavy metal response transcriptional regulator [Ralstonia solanacearum PSI07] gi|299075113|emb|CBJ34395.1| Two component heavy metal response transcriptional regulator [Ralstonia solanacearum PSI07] Length = 201 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/71 (43%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 165 KKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + RS A A L+ERE L + G TS EIA LGLS TV+ ++ +A KL RI+ Sbjct: 129 RPRSPAPAVPLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIE 188 Query: 224 AIAKAIRFGYI 234 A+ KA G I Sbjct: 189 AVVKASSAGII 199 >gi|169797684|ref|YP_001715477.1| autoinducer-binding transcriptional regulator [Acinetobacter baumannii AYE] gi|213155522|ref|YP_002317567.1| eR transcriptional regulator [Acinetobacter baumannii AB0057] gi|215485038|ref|YP_002327279.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB307-0294] gi|239503083|ref|ZP_04662393.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB900] gi|301348492|ref|ZP_07229233.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB056] gi|301513441|ref|ZP_07238678.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB058] gi|301597204|ref|ZP_07242212.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB059] gi|332853574|ref|ZP_08434826.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013150] gi|332869309|ref|ZP_08438707.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013113] gi|169150611|emb|CAM88520.1| putative Autoinducer-binding transcriptional regulator (LuxR family) [Acinetobacter baumannii AYE] gi|193076010|gb|ABO10598.2| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978] gi|213054682|gb|ACJ39584.1| eR transcriptional regulator [Acinetobacter baumannii AB0057] gi|213987791|gb|ACJ58090.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB307-0294] gi|323516195|gb|ADX90576.1| autoinducer-binding transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332728538|gb|EGJ59911.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013150] gi|332732817|gb|EGJ64032.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013113] Length = 238 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ +G TS EIA+ LG++ TVN +L ++ KL+ N+I A +A+ G Sbjct: 178 LTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLG 236 >gi|332875591|ref|ZP_08443403.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6014059] gi|332736164|gb|EGJ67179.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6014059] Length = 238 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ +G TS EIA+ LG++ TVN +L ++ KL+ N+I A +A+ G Sbjct: 178 LTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLG 236 >gi|167765400|ref|ZP_02437513.1| hypothetical protein BACSTE_03788 [Bacteroides stercoris ATCC 43183] gi|167697028|gb|EDS13607.1| hypothetical protein BACSTE_03788 [Bacteroides stercoris ATCC 43183] Length = 256 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Query: 162 ELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 ELF +SA LT RE LQL G S+EIA LG+S+HTVN + + KL Sbjct: 181 ELFSPYTSAEIKPELTNREIEILQLIKQGLLSKEIAYTLGVSIHTVNIHRQNLLRKLGVQ 240 Query: 220 NRIQAIAKAIRFGYI 234 N I+AI + G I Sbjct: 241 NSIEAINIGSKTGLI 255 >gi|320449580|ref|YP_004201676.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01] gi|320149749|gb|ADW21127.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01] Length = 217 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/93 (43%), Positives = 49/93 (52%), Gaps = 5/93 (5%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLG 199 A EV+++A A ++I DF KK SS L+ERE L+L GYT+ EIA +L Sbjct: 120 AGEVLLDAELAG-RIIQDFR--AKKESSLPLHAELSEREIQILKLVAQGYTNLEIAAELQ 176 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LS TV L KL NR QA AIR G Sbjct: 177 LSEKTVRNRLSEIFQKLHLNNRTQAALYAIREG 209 >gi|307330717|ref|ZP_07609854.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883609|gb|EFN14658.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 214 Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 152 SLTEREREVLALIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 211 >gi|329939330|ref|ZP_08288666.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301559|gb|EGG45453.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 224 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 4/90 (4%) Query: 149 AHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 A G ++IT+F + S + LTERET L L G ++ EIAE+L ++ T Sbjct: 130 APGVTRRLITEFTRMRSGPRSPLKERVGTLTERETEVLALIAQGLSNAEIAERLCVAEQT 189 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++G VKL +R QA A G + Sbjct: 190 VKTHVGRILVKLGLRDRTQAAVYAFESGVV 219 >gi|315502094|ref|YP_004080981.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315408713|gb|ADU06830.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 216 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A Q++ + R AAR LTERE L+L G ++ EIA +L + V TV ++G Sbjct: 130 AAIRQLVDTYGRRDGDRLRAAR-LTEREAEVLRLMAAGLSNPEIAARLVVGVETVKTHVG 188 Query: 211 SATVKLDAVNRIQAIAKAIRFGYIC 235 + KL +R QA+ A G++ Sbjct: 189 NVLAKLGVRDRTQAVVAAYESGFVI 213 >gi|89096396|ref|ZP_01169289.1| YocG [Bacillus sp. NRRL B-14911] gi|89089250|gb|EAR68358.1| YocG [Bacillus sp. NRRL B-14911] Length = 198 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + LTERE + L+L DG + EIA +L + TV Y+ + KL+ NR Sbjct: 125 ELMDDMYAEENPLTEREKAVLELVADGKNTNEIAAELSIKSGTVRNYVSAILEKLEVQNR 184 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 185 IEAITRSREKGW 196 >gi|297154246|gb|ADI03958.1| putative two-component regulator [Streptomyces bingchenggensis BCW-1] Length = 222 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L++RE L G G+T+ EIAE+L L+ TV ++G K+ A +RIQA+ A Sbjct: 156 RTLSDREREVLVAIGQGWTNTEIAERLVLTESTVKKHVGRVLAKIGARDRIQAVIMAYDA 215 Query: 232 GYI 234 G + Sbjct: 216 GLV 218 >gi|21219875|ref|NP_625654.1| two component system DNA binding response regulator [Streptomyces coelicolor A3(2)] gi|256789028|ref|ZP_05527459.1| two component system DNA binding response regulator [Streptomyces lividans TK24] gi|289772921|ref|ZP_06532299.1| two component system DNA binding response regulator [Streptomyces lividans TK24] gi|13122115|emb|CAC32294.1| putative two component system DNA binding response regulator [Streptomyces coelicolor A3(2)] gi|289703120|gb|EFD70549.1| two component system DNA binding response regulator [Streptomyces lividans TK24] Length = 211 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 4/108 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ + LA+ V A G A + D L + + LT RET L L Sbjct: 104 TGYLLKDAPPEDLADAVRTAAAGRTALAPAVAD--RLMHRLRTPGTTLTRRETEVLALVA 161 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +++ I +L L+ TV ++L KLD +R A+A A G I Sbjct: 162 DGLSNQAIGRRLHLTEGTVKSHLARVYAKLDVDSRTAAVATAGSLGLI 209 >gi|319648461|ref|ZP_08002677.1| YvfU protein [Bacillus sp. BT1B_CT2] gi|317389540|gb|EFV70351.1| YvfU protein [Bacillus sp. BT1B_CT2] Length = 197 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+LA G T++EI+E+L LS TV Y+ KLDA NR++A A G+ Sbjct: 137 LTEREQDILRLAYIGKTTKEISEELFLSSGTVRNYISEIMQKLDAKNRMEAARIAEGKGW 196 Query: 234 I 234 I Sbjct: 197 I 197 >gi|212640439|ref|YP_002316959.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212561919|gb|ACJ34974.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 213 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +++ +F +L KK +LT+ E S L+L GYT +EIA L +S+ TV ++ Sbjct: 134 HKIRKEFCKLRKKEQMTC-SLTKTEISILKLIDQGYTQKEIANHLVISIQTVKNHVSRIL 192 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL A N A+ KA G++ Sbjct: 193 KKLSAKNSKHAVCKAREMGFL 213 >gi|309792258|ref|ZP_07686730.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308225799|gb|EFO79555.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 229 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 2/94 (2%) Query: 143 NEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 NE+++ QV++ F ++ + S L+ RE L+L G T++EIA L + Sbjct: 128 NEMVLALPDVAAQVLSAFRQMVIDEDTQSIFSPLSPRELEVLELVAAGRTNKEIALNLDI 187 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV ++ S KL +R QA+ A+R G+I Sbjct: 188 SNQTVKNHVSSILRKLAVNDRTQAVVYAMRRGWI 221 >gi|290955399|ref|YP_003486581.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260644925|emb|CBG68011.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 245 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 38/60 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE ++L G+T+ EIA + +S+ TV +LGS +KL A NR++ A A R G+ Sbjct: 181 LTERELDVVRLVALGHTNAEIAASMFVSLSTVKTHLGSIQLKLAARNRVEIAAWAWRTGH 240 >gi|229493950|ref|ZP_04387722.1| two-component system response regulator [Rhodococcus erythropolis SK121] gi|229319227|gb|EEN85076.1| two-component system response regulator [Rhodococcus erythropolis SK121] Length = 239 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 6/92 (6%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 EV+ + AC +V+ D + L + +L+ RE LQL G + EIAE+L +S Sbjct: 152 REVVAASSAACSRVVGDQVALDRV------HLSPREIQVLQLVARGAGNVEIAEELFVSR 205 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L + VK +R+QA +A ++G I Sbjct: 206 RTVATHLENIFVKTGTNSRVQAAVRAAKWGLI 237 >gi|171320496|ref|ZP_02909525.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171094259|gb|EDT39337.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 234 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+ DG T+ EI+ L +S TVN ++ + KL N++ A+AKA G Sbjct: 174 LTQRETDVLKWTADGKTAYEISLILSISESTVNFHVKNIVAKLGTANKVHAVAKAALMGM 233 Query: 234 I 234 + Sbjct: 234 L 234 >gi|297153818|gb|ADI03530.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 219 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L DG+++ EIA L +S TV ++ KLD +R+QA+ A R G Sbjct: 158 LTPRELEVLRLIADGFSNSEIAAALQISPETVKTFVSRILTKLDLRDRVQAVVYAYRQGL 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|154688084|ref|YP_001423245.1| YocG [Bacillus amyloliquefaciens FZB42] gi|154353935|gb|ABS76014.1| YocG [Bacillus amyloliquefaciens FZB42] Length = 199 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 38/72 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S LTERE L+L DG ++EIA L + TV Y+ KL+ NR Sbjct: 126 ELMEDIYSEENPLTEREKEVLELVADGKNTKEIANALSIKSGTVRNYVSMILDKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITRSKEKGW 197 >gi|23099974|ref|NP_693440.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22778205|dbj|BAC14475.1| two-component response regulator involved in degradative enzyme [Oceanobacillus iheyensis HTE831] Length = 230 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 18/123 (14%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--------- 173 GY++ + L + + + + G Y ++ ++ L K+ SS+ + Sbjct: 105 GYLLKEMDSDALIDAIKVVSDGGSYLHPRVTHNLVKEYRRLAKENSSSIADKGIEYRKPL 164 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE LQL DG ++ +AE L +S TV ++ + K++ +R QA+ AIR Sbjct: 165 HLLTKRECQVLQLLADGKSNRAVAETLYISEKTVKNHVSNILQKMNVNDRTQAVVSAIRK 224 Query: 232 GYI 234 G++ Sbjct: 225 GWV 227 >gi|116694705|ref|YP_728916.1| LuxR family transcriptional regulator [Ralstonia eutropha H16] gi|113529204|emb|CAJ95551.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16] Length = 920 Score = 47.4 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E LQL +GY++ +AE+L +S TV +L + + KL A NR QA+A A + G Sbjct: 860 LTPKEQKVLQLLAEGYSNVAMAERLFVSETTVRTHLRNISAKLHASNRTQAVAIARQLGL 919 Query: 234 I 234 + Sbjct: 920 L 920 >gi|28558836|ref|NP_788096.1| putative transcriptional regulator [Ruegeria sp. PR1b] gi|22726387|gb|AAN05182.1| RC109 [Ruegeria sp. PR1b] Length = 258 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQ A G TS E A L LS T+ Y+G A KL+A + A+ KA+ G Sbjct: 193 LTVREKQVLQWAAFGKTSWETAMILELSERTIETYIGKAVAKLEASTKAHAVCKALSLGL 252 Query: 234 I 234 I Sbjct: 253 I 253 >gi|320450456|ref|YP_004202552.1| DNA-binding response regulator, LuxR family [Thermus scotoductus SA-01] gi|320150625|gb|ADW22003.1| DNA-binding response regulator, LuxR family [Thermus scotoductus SA-01] Length = 206 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 38/63 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+L G + +E+A+ LGLS TV +L S KL A NR++A+ KA G Sbjct: 142 SLTSREEEVLRLLAQGLSVKEMAKALGLSPDTVKDHLESLYGKLLARNRVEALEKARSLG 201 Query: 233 YIC 235 ++ Sbjct: 202 FLA 204 >gi|260461224|ref|ZP_05809472.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319785401|ref|YP_004144877.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032761|gb|EEW34024.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317171289|gb|ADV14827.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 248 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 67/170 (39%), Gaps = 16/170 (9%) Query: 74 DDFLFHFNSGLLPIIWQSI--------QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D + G+ P W + E V++ +G ++ G +P G A +L Sbjct: 84 DPLIKKGRKGVGPFRWSEVYTHESTTENERRVLDEAGTFGLK-SGVTVPLHGPAGSFKL- 141 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQL 184 S L N I A Q +L +RSS A +++RE C+ Sbjct: 142 -----MCFAKSADCELENRAITYLQIAAVQFHLRVAKLGTQRSSEHAYKISDRERECIHW 196 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EI LG S +TV+ ++ + KLD R AKA+ G I Sbjct: 197 ISKGKTSGEIGTILGRSQNTVDFHVKNVMRKLDTTRRTALAAKAVELGII 246 >gi|222149185|ref|YP_002550142.1| transcriptional regulator protein [Agrobacterium vitis S4] gi|221736170|gb|ACM37133.1| transcriptional regulator protein [Agrobacterium vitis S4] Length = 243 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 38/75 (50%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LEL+ LT RE + +G T EI+ G+S V ++G+ +KL AV+ Sbjct: 169 LELYGANQKQTTRLTPREREVIGWIANGKTDWEISVIFGVSEKAVTKHVGNIMMKLGAVS 228 Query: 221 RIQAIAKAIRFGYIC 235 R AIA+A R IC Sbjct: 229 RSHAIAEAFRQKLIC 243 >gi|159036019|ref|YP_001535272.1| LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157914854|gb|ABV96281.1| transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 195 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT R+T+ L L DG+ + IA L S HTV + ++L NR A+A+AIR G Sbjct: 135 LTPRQTAVLNLMADGHPNVAIATALSCSEHTVKNVIYDMMMRLQVNNRAHAVARAIRAGL 194 Query: 234 I 234 I Sbjct: 195 I 195 >gi|52082580|ref|YP_081371.1| CheY-like [Bacillus licheniformis ATCC 14580] gi|52787980|ref|YP_093809.1| YvfU [Bacillus licheniformis ATCC 14580] gi|52005791|gb|AAU25733.1| CheY-like [Bacillus licheniformis ATCC 14580] gi|52350482|gb|AAU43116.1| YvfU [Bacillus licheniformis ATCC 14580] Length = 200 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+LA G T++EI+E+L LS TV Y+ KLDA NR++A A G+ Sbjct: 140 LTEREQDILRLAYIGKTTKEISEELFLSSGTVRNYISEIMQKLDAKNRMEAARIAEGKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|298247701|ref|ZP_06971506.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550360|gb|EFH84226.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 231 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQ G S+EIA +LG+S+ TV ++L S KL +R A+A AI G Sbjct: 163 LTEREREILQGVARGERSKEIAVRLGISIRTVGSHLASIYTKLGVDSRASAVALAIERGL 222 Query: 234 I 234 + Sbjct: 223 L 223 >gi|126347584|emb|CAJ89296.1| putative two-component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 225 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 37/62 (59%), Gaps = 3/62 (4%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E +KR SA LTERE + DG + EIA++L +SV TV A+ GS KL+ NR Sbjct: 157 EAARKRLSA---LTERERETARAIADGLGNPEIAQRLRISVATVKAHTGSLFAKLEVENR 213 Query: 222 IQ 223 +Q Sbjct: 214 VQ 215 >gi|284054156|ref|ZP_06384366.1| transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] gi|291570920|dbj|BAI93192.1| LuxR family transcriptional regulator [Arthrospira platensis NIES-39] Length = 105 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 40/63 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE ++L G T++EIAEKL +S TV+ ++ + K NR++ + ++++G Sbjct: 11 SLSERELQVVELVAIGLTNQEIAEKLEISKRTVDNHISNILTKTSTGNRVELVRWSLQWG 70 Query: 233 YIC 235 +C Sbjct: 71 KVC 73 >gi|253575856|ref|ZP_04853190.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844650|gb|EES72664.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 242 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G +++ I E L +S TV ++ S K+D +R QA+ AI+FG+ Sbjct: 180 LTRREAEVLRLMAEGRSNKMIGEHLFISEKTVKNHVSSILQKMDVDDRTQAVINAIKFGW 239 Query: 234 IC 235 + Sbjct: 240 VT 241 >gi|207722200|ref|YP_002252637.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2] gi|206587375|emb|CAQ17958.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2] Length = 459 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G Sbjct: 399 LTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGL 458 Query: 234 I 234 I Sbjct: 459 I 459 >gi|302878668|ref|YP_003847232.1| transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] gi|302581457|gb|ADL55468.1| transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] Length = 243 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 72/173 (41%), Gaps = 19/173 (10%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG-GLLPFAGIAFPVRLGFHKNGYV 132 D H S P+IW + + Q + E G +G+ P+ + G V Sbjct: 75 DPTFSHCISKSTPLIWSP----KIFSAQKQKEMYEEACGYGVKSGVTLPIHGAKGELGIV 130 Query: 133 IFTSE------FLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAARN---LTERETSC 181 F S+ F AN + E AC++ ++ L+ F K S N +T RE C Sbjct: 131 CFVSDTKPDKRFHRDANHHLPEL--ACFRDFILESSLQ-FMKPSRQVENPISVTHRELEC 187 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ + G +S EI L + TVN + + K +R QAI KAI G I Sbjct: 188 LKWSASGKSSWEIGHILNCTEATVNFHFSNIRRKFSTTSRQQAIVKAISLGLI 240 >gi|186683493|ref|YP_001866689.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465945|gb|ACC81746.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 206 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 4/81 (4%) Query: 159 DFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 D +EL R N LT RE L + G G ++ +A++L +S HTV +L S Sbjct: 125 DAIELLSIREKVVANPVQTLTPREIEVLGMLGSGLGNKAMAKRLQISEHTVKFHLSSIFQ 184 Query: 215 KLDAVNRIQAIAKAIRFGYIC 235 KL +R +A+A +R G I Sbjct: 185 KLSVSSRTEAVAVGVRLGLIM 205 >gi|300784747|ref|YP_003765038.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794261|gb|ADJ44636.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 217 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A+ LTERE L+L G ++ EIA +L + V TV ++G+ KL A +R QA+ +A Sbjct: 149 ASAGLTERERDVLRLVAAGLSNVEIASELYVGVQTVKTHVGNVLAKLGARDRTQAVIRAY 208 Query: 230 RFGYIC 235 G++ Sbjct: 209 DSGFVT 214 >gi|282862559|ref|ZP_06271620.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562245|gb|EFB67786.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 225 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I ++L+ ++ AR +TERE L+L +G++S+EIA L +SV TV + Sbjct: 139 GAVTALIRNYLDRVREGGDVPARAITEREEEILKLVAEGHSSKEIAGMLVISVKTVERHR 198 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G I Sbjct: 199 ANLLQKLGLRDRLELTRYAIRAGLI 223 >gi|302867524|ref|YP_003836161.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302570383|gb|ADL46585.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 219 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L DG + EIA +L +S TV Y+ KLD +R+QA+ A R G Sbjct: 157 GLTPRELEVLRLIADGLANSEIAARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRTG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|15889313|ref|NP_354994.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157150|gb|AAK87779.1| transcriptional regulator [Agrobacterium tumefaciens str. C58] Length = 231 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+ E CL+L +GY +A LGLS +N K A NR QA+AKA+ G Sbjct: 169 LTDTERKCLELMAEGYAPVRLARALGLSGSDLNTLEAKIIGKFSASNRFQAVAKAVLLGV 228 Query: 234 I 234 I Sbjct: 229 I 229 >gi|37523606|ref|NP_926983.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] gi|35214611|dbj|BAC91978.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 90 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 42/66 (63%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 ++ +L++RE L+L G+T+E+IAE L +S TV+ ++ + K NR++ + A+ Sbjct: 7 SSESLSDREMQILELVAQGHTNEDIAEVLEISKRTVDNHVSNILQKTKTKNRVELVRWAL 66 Query: 230 RFGYIC 235 ++G +C Sbjct: 67 QWGKVC 72 >gi|148256507|ref|YP_001241092.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146408680|gb|ABQ37186.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 242 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 68/173 (39%), Gaps = 19/173 (10%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFA--GIAFPVRLGFHK 128 D + H + LLP+ W +++ SG+ VR E G+ P+R + Sbjct: 75 DPVIKHGLASLLPLDWSNLE-------SGEADVRAFFREARSFGVGRNGMTIPIRGPHGE 127 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL-------TERETSC 181 TS + A + +I F R S R+L + RE Sbjct: 128 RALFSLTSNLSAGQWQTTRLAMMRDFMIIAYFFHDQAVRLSGMRDLPGMGRPLSRRERET 187 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQLA G+ ++IA L +S V YL +A KL+ Q IAKAI I Sbjct: 188 LQLAARGFAPKQIAADLRVSTTAVRLYLQTARTKLECTTLTQGIAKAISLDLI 240 >gi|319782058|ref|YP_004141534.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167946|gb|ADV11484.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 208 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L L +G ++ IA +L +SVHT ++ + +KL A NR AIA A+R G Sbjct: 145 SLSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTDAIATAMRQG 204 Query: 233 YI 234 + Sbjct: 205 LV 206 >gi|159040348|ref|YP_001539601.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157919183|gb|ABW00611.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 219 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SS+ LT RE L+L DG ++ EIA L +S TV Y+ KLD +R+QA+ Sbjct: 152 SSSEIPLTPRELEVLRLIADGLSNSEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVY 211 Query: 228 AIRFGYI 234 A R G + Sbjct: 212 AYRSGLV 218 >gi|12620586|gb|AAG60862.1|AF322012_167 ID375 [Bradyrhizobium japonicum] Length = 261 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET CL +G ++ I + + ++ +TVN ++ + KL A NR A+AKA R G Sbjct: 201 LTPRETECLYWVAEGKSAWVIGQLVNVTDNTVNFHMKNVIRKLGAANRTNAVAKATRRGI 260 Query: 234 I 234 I Sbjct: 261 I 261 >gi|27376991|ref|NP_768520.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27350133|dbj|BAC47145.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 253 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET CL +G ++ I + + ++ +TVN ++ + KL A NR A+AKA R G Sbjct: 193 LTPRETECLYWVAEGKSAWVIGQLVNVTDNTVNFHMKNVIRKLGAANRTNAVAKATRRGI 252 Query: 234 I 234 I Sbjct: 253 I 253 >gi|226314788|ref|YP_002774684.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226097738|dbj|BAH46180.1| probable transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 856 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A LTERE+ L L G+G ++ +IA+KL L++ TV ++ KL NR QAI + Sbjct: 789 SPALEKLTERESEVLALIGEGLSNSDIADKLHLTLGTVKGHVHQIFSKLQVKNRAQAIVR 848 >gi|111023439|ref|YP_706411.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110822969|gb|ABG98253.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 216 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARN------ 173 L +G+++ +E L+ A V+ + +T L ++ +RS+A R Sbjct: 93 LSIGASGFMLKDAPAEELIRAVRVVADGEALLAPTVTRRLIADVTSRRSTARRKPAALSA 152 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIAE+L ++ TV ++G KLD +R QA+ A G Sbjct: 153 LTPREREVLELIARGMSNTEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGL 212 Query: 234 IC 235 + Sbjct: 213 VT 214 >gi|325283103|ref|YP_004255644.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] gi|324314912|gb|ADY26027.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] Length = 233 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE+ L L G +++EIA +LG+S TV +L KLDA +R +A+++A G Sbjct: 171 RLTPRESEVLPLLAQGLSNKEIARELGVSPDTVKDHLARMYGKLDACDRTEAVSRARTIG 230 Query: 233 YI 234 + Sbjct: 231 LL 232 >gi|254444586|ref|ZP_05058062.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198258894|gb|EDY83202.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 200 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQ+ +G++++EIA+KLGLSV TV+ + + KLD N A++ G Sbjct: 134 LTEREREVLQMIAEGHSTKEIAKKLGLSVKTVDNHRTNMMRKLDLHNVASITRYAMQNGL 193 Query: 234 I 234 I Sbjct: 194 I 194 >gi|325919524|ref|ZP_08181543.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325923815|ref|ZP_08185429.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325545709|gb|EGD16949.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325550000|gb|EGD20835.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 200 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 40/64 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE + L+LAG+G ++ EIA++L LS TV +L KL NRI+A A + Sbjct: 137 ADPLSERERTVLRLAGEGRSASEIAQQLQLSHGTVRNHLSECIGKLGVANRIEAYRLARQ 196 Query: 231 FGYI 234 G++ Sbjct: 197 KGWL 200 >gi|239934234|ref|ZP_04691187.1| two component LuxR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291442679|ref|ZP_06582069.1| two component transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291345574|gb|EFE72530.1| two component transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 230 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 35/69 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R R L RE LQL +G ++ EIA + ++ TV Y+ KLD +R+QA+ Sbjct: 159 RQDVVRALAPRELEVLQLIAEGLSNAEIAAAMFITPETVKTYVSRILAKLDLRDRVQAVV 218 Query: 227 KAIRFGYIC 235 A R G + Sbjct: 219 LAYRVGLVS 227 >gi|114706302|ref|ZP_01439204.1| nitrate/nitrite regulatory protein [Fulvimarina pelagi HTCC2506] gi|114538163|gb|EAU41285.1| nitrate/nitrite regulatory protein [Fulvimarina pelagi HTCC2506] Length = 205 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 20/115 (17%) Query: 132 VIFTSE--FLMLANEVIIEAHGACYQ------------------VITDFLELFKKRSSAA 171 VIF++E ++L V + +G CYQ + +L+L +A Sbjct: 84 VIFSAEEDIVILRQAVRLGTYGFCYQFDDPEVLFDTLLAVANGRICIPYLDLTLVNDTAI 143 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE L + G+T+ +IA + G+S +TV YL + KLD NR A+A Sbjct: 144 SKLTVRERELLSMLALGWTNVQIAARTGISQNTVKYYLKNLYEKLDVQNRAMAVA 198 >gi|291298154|ref|YP_003509432.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567374|gb|ADD40339.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 216 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++++IA L +S+ T+ ++GS KL A NR QA+ A G+ Sbjct: 152 LTAREAEVLRLMATGLSNQDIATHLTVSLETIKTHVGSVLTKLGAANRTQAVIIAYESGF 211 Query: 234 IC 235 + Sbjct: 212 VT 213 >gi|254389987|ref|ZP_05005209.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294813922|ref|ZP_06772565.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197703696|gb|EDY49508.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326521|gb|EFG08164.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 201 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L LA DG EIAE+ LS TV YL SA KL A NR A+ A G+ Sbjct: 141 LTAREAEVLALAADGAPIAEIAERASLSQGTVRNYLSSAVSKLGAENRHTAVRLARHRGW 200 Query: 234 I 234 + Sbjct: 201 V 201 >gi|90739296|gb|ABD97851.1| AvsR [Agrobacterium vitis] Length = 246 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ G + E A LG+S TV ++ +A +KLDAV+ QA+ KA++ G Sbjct: 180 LTRREQETLRWTAAGKSYWETAVILGISERTVRYFMANARIKLDAVSNTQAVVKALQRGL 239 Query: 234 I 234 I Sbjct: 240 I 240 >gi|51891787|ref|YP_074478.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855476|dbj|BAD39634.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 214 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 40/68 (58%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A LTERET L+L G ++EIA L +S +TV ++ + KL A +R +A+ Sbjct: 145 RQEGAEGLTERETEILRLIASGAANKEIAAALFISENTVKTHISNLFQKLGARDRTEAVT 204 Query: 227 KAIRFGYI 234 KA+ G++ Sbjct: 205 KALARGWL 212 >gi|270294227|ref|ZP_06200429.1| transcriptional regulator [Bacteroides sp. D20] gi|270275694|gb|EFA21554.1| transcriptional regulator [Bacteroides sp. D20] Length = 254 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 37/57 (64%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S + L+ RE L+L G+ S+EIA +LG+S++TVN + + KLDA N ++AI Sbjct: 188 SPDKQLSNREKEILRLIRQGFLSKEIAHQLGVSIYTVNNHRKNILSKLDANNIMEAI 244 >gi|170697389|ref|ZP_02888481.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170137720|gb|EDT05956.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 228 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+ A DG T+ EIA L +S T+ ++ + KL++VN+ QAI KA+ G Sbjct: 167 FTTREKEVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGI 226 Query: 234 I 234 I Sbjct: 227 I 227 >gi|188586933|ref|YP_001918478.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351620|gb|ACB85890.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 228 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 40/71 (56%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K + LT RE L+L GYT++EI+++L +S TV ++ + K+D +R Q Sbjct: 156 IKSDEAVQSELTGREKEILELMAQGYTNKEISKELYISEKTVKNHVSNILRKMDVTDRTQ 215 Query: 224 AIAKAIRFGYI 234 A+ A++ G + Sbjct: 216 AVITALKCGVV 226 >gi|209526078|ref|ZP_03274610.1| transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209493466|gb|EDZ93789.1| transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 105 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 40/63 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE ++L G T++EIAEKL +S TV+ ++ + K NR++ + ++++G Sbjct: 11 SLSERELQVVELVAIGLTNQEIAEKLEISKRTVDNHISNILTKTSTGNRVELVRWSLQWG 70 Query: 233 YIC 235 +C Sbjct: 71 KVC 73 >gi|296123997|ref|YP_003631775.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296016337|gb|ADG69576.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 217 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 39/68 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + A +L+ERET L+L G+ ++EIA KL +S+ TV Y KL R + + Sbjct: 146 RLTGAESLSERETEVLKLIAAGHMAKEIAAKLDISLKTVETYKSRGMQKLSLRGRTELVR 205 Query: 227 KAIRFGYI 234 A++ G++ Sbjct: 206 FAMKMGWL 213 >gi|295695702|ref|YP_003588940.1| GAF modulated transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295411304|gb|ADG05796.1| GAF modulated transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 511 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LQ DG ++EI++ L LS +TV+ Y+ + +L NR A+AKA+R Sbjct: 450 LTPREQQILQFIADGLDTKEISQHLHLSEYTVSEYVRAILRRLQVPNRSAAVAKAMR 506 >gi|268316568|ref|YP_003290287.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] gi|262334102|gb|ACY47899.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] Length = 211 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%) Query: 161 LELFKKR---SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LELF+ + ++A + LT RE L L G ++ EIAE+L LS+ TV ++ KL Sbjct: 134 LELFRHQLAPAAALQQLTPREQEVLHLLARGLSNAEIAERLYLSIETVRTHIRHIYRKLQ 193 Query: 218 AVNRIQAIAK 227 A NR +A+++ Sbjct: 194 ARNRAEAVSR 203 >gi|259047361|ref|ZP_05737762.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259035983|gb|EEW37238.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 202 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 2/60 (3%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F+K+SSA +L+ERE L L +G+ ++EIAEK+ LS TV YL + KL+ +R Q Sbjct: 136 FEKKSSA--HLSERENELLYLVAEGFNNKEIAEKMYLSEGTVRNYLSALLEKLELRDRTQ 193 >gi|225872721|ref|YP_002754178.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] gi|225794134|gb|ACO34224.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] Length = 203 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L AG+G S++IA +L LS TV YL A KL A NR+ A A G+ Sbjct: 143 LTERERQILWRAGEGKASQDIAAELHLSEGTVRNYLSEAISKLGAANRVDAARIARSKGW 202 Query: 234 I 234 + Sbjct: 203 L 203 >gi|167736311|dbj|BAG07412.1| LuxR-like protein [Gluconacetobacter polyoxogenes] Length = 236 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE CL+ G +S E +G+S TVN ++ +A +KL NRI + +AI G Sbjct: 174 LTPREKECLRWTAKGKSSWETGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAICAGL 233 Query: 234 I 234 I Sbjct: 234 I 234 >gi|256374750|ref|YP_003098410.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255919053|gb|ACU34564.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 215 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE L L G G ++ EI L LS TV Y+ S K+ AVNR+QA A R G Sbjct: 153 SLSEREREVLVLIGQGMSNAEIGGTLHLSEATVKGYVSSVLGKIGAVNRVQAALVAYRGG 212 Query: 233 YIC 235 I Sbjct: 213 LIA 215 >gi|23100305|ref|NP_693772.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22778537|dbj|BAC14806.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 199 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 4/105 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 NGY++ S LAN I A A +V EL LT RE L+L DG Sbjct: 97 NGYLLKDSPSEDLANS--IRAIMAGRKVYAP--ELIDMAYEEGNPLTTREEQVLKLIADG 152 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T++EIA +L L+ TV Y+ + KL+ NRI+AI++ G+ Sbjct: 153 KTTKEIAGQLYLTNGTVRNYVSTIMDKLNVSNRIEAISRIKEKGW 197 >gi|218294966|ref|ZP_03495820.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] gi|218244874|gb|EED11398.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] Length = 217 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 A EV+++A A ++I DF ++ L+ERE L+L GYT+ EIA +L LS Sbjct: 120 AGEVLLDAELAG-RIIQDFRARKEQSLPLHAELSEREIQILKLVAQGYTNLEIAAELQLS 178 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 TV L KL NR QA AIR G Sbjct: 179 EKTVRNRLSEIFQKLHLNNRTQAALYAIREG 209 >gi|76057938|emb|CAJ30486.1| PlaR protein [Burkholderia plantarii] Length = 240 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 163 LFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L K S AA +LT+RE L +G T+ EI E+L +S TV ++ + KL A N+ Sbjct: 164 LVPKLSPAASISLTKREREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANK 223 Query: 222 IQA-IAKAIRFGYI 234 +QA + KAI G I Sbjct: 224 VQAVVVKAIGMGLI 237 >gi|115360781|ref|YP_777918.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|172065092|ref|YP_001815804.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115286109|gb|ABI91584.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] gi|171997334|gb|ACB68251.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 228 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+ A DG T+ EIA L +S T+ ++ + KL++VN+ QAI KA+ G Sbjct: 167 FTTREKEVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGI 226 Query: 234 I 234 I Sbjct: 227 I 227 >gi|325290865|ref|YP_004267046.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324966266|gb|ADY57045.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 212 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 2/80 (2%) Query: 158 TDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 T L+ F +K S+ L+ERE +QL G ++++I EKL ++ TV +L + K Sbjct: 132 TKILQEFSIQKDDSSDNKLSEREKEVVQLVSQGLSNKDIGEKLHITESTVKNHLRNILAK 191 Query: 216 LDAVNRIQAIAKAIRFGYIC 235 L NR+Q +A A + G++ Sbjct: 192 LHLRNRVQLVAFAYKNGHLS 211 >gi|315222040|ref|ZP_07863951.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315189006|gb|EFU22710.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 199 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+ +E LQ A G +S+EIA+KL LS TV Y+ S KL A NR Sbjct: 127 ELMEVMMTSKNPLSNQEILVLQAAARGLSSKEIAQKLYLSNGTVRNYMSSILTKLAAENR 186 Query: 222 IQAIAKAIRFGYI 234 ++A+ A G+I Sbjct: 187 LEAVRIAQENGWI 199 >gi|309791843|ref|ZP_07686330.1| TPR repeat-containing transcriptional regulator LuxR [Oscillochloris trichoides DG6] gi|308226165|gb|EFO79906.1| TPR repeat-containing transcriptional regulator LuxR [Oscillochloris trichoides DG6] Length = 907 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE + L G +++EIAE++ + V TV ++ + KLD ++R QA+ KA FG Sbjct: 846 LTPRELEVIGLVAAGLSNQEIAERMVVGVSTVKKHINNIYGKLDVLSRTQALKKAREFGL 905 Query: 234 I 234 I Sbjct: 906 I 906 >gi|326442335|ref|ZP_08217069.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 203 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/61 (47%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L LA DG EIAE+ LS TV YL SA KL A NR A+ A G+ Sbjct: 143 LTAREAEVLALAADGAPIAEIAERASLSQGTVRNYLSSAVSKLGAENRHTAVRLARHRGW 202 Query: 234 I 234 + Sbjct: 203 V 203 >gi|297195179|ref|ZP_06912577.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197722161|gb|EDY66069.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 214 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 152 SLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHG 211 Query: 233 Y 233 Sbjct: 212 M 212 >gi|315121859|ref|YP_004062348.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495261|gb|ADR51860.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 246 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE CL +G TS+EIA LG+S +T+N Y+ S K R AIA A+R Sbjct: 186 LTGREIECLTWISEGKTSDEIAVILGISRNTINNYIASIMRKTATKTRSGAIAYAVR 242 >gi|51893773|ref|YP_076464.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857462|dbj|BAD41620.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 224 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 35/56 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ G T+ EIAE+LGLS +TV Y+ S KL+ NR+QA A A+ Sbjct: 157 LSPREAQILRRIAAGNTNREIAEQLGLSENTVKNYVKSILAKLNLENRVQAAAWAL 212 >gi|297158227|gb|ADI07939.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 249 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G+G + +IAE++GL+ TV ++ + KL VNR+QA A R G Sbjct: 152 LTPREREVLALLGEGLANPQIAERMGLAPSTVKDHVRALLAKLGGVNRVQAAIVADRAGL 211 Query: 234 I 234 + Sbjct: 212 L 212 >gi|146280178|ref|YP_001170335.1| hypothetical protein Rsph17025_4179 [Rhodobacter sphaeroides ATCC 17025] gi|145558419|gb|ABP73030.1| two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides ATCC 17025] Length = 232 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 3/105 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQLAGDG 188 GY+ T + N + G Y + F+ L +R SS R LT +E L G Sbjct: 103 GYIDKTQGARSMVNALNFILAGETY--LPAFMRLTPRRHSSDERGLTPKELEVLGGLTIG 160 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++EIA+ +GLS TV ++ S KL+ NR QA A +FGY Sbjct: 161 LMNKEIAQNMGLSEVTVKMHVRSICAKLNVKNRTQAAMVAAQFGY 205 >gi|319793534|ref|YP_004155174.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315595997|gb|ADU37063.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 255 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE+ L+ GY S EI E+LG++ TVN ++ S KL +R QA+ A+ G Sbjct: 195 LTPRESEILRFVACGYVSAEIGERLGITWQTVNVHIKSIYKKLHVHSRAQAVNFAVHTGL 254 Query: 234 I 234 I Sbjct: 255 I 255 >gi|76819232|ref|YP_337020.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 1710b] gi|76583705|gb|ABA53179.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] Length = 394 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 39/68 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + +LT RE LQ AG G T+ EI++ LG+S TV +L +A K+ A NR QA+ Sbjct: 327 RRQGSCDLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVV 386 Query: 227 KAIRFGYI 234 A G I Sbjct: 387 IASARGLI 394 >gi|317475113|ref|ZP_07934381.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] gi|316908757|gb|EFV30443.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] Length = 261 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G S+EIA L +S++T+N + + +KL A N I+A+ A R G Sbjct: 196 LTNRELCVLQLMKQGLLSKEIANSLNVSINTINTHRQNILLKLKANNSIEAVNIAQRLGL 255 Query: 234 I 234 + Sbjct: 256 L 256 >gi|289523811|ref|ZP_06440665.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502955|gb|EFD24119.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 211 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 39/63 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L LAG G +S+EIA KL +S TV +L S KL A N+ +A+ A+++G Sbjct: 143 SLSPREREVLLLAGRGESSKEIASKLYISERTVQTHLASIYDKLGARNKTEALLLALKYG 202 Query: 233 YIC 235 + Sbjct: 203 VVT 205 >gi|171315924|ref|ZP_02905153.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171098927|gb|EDT43717.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 228 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+ A DG T+ EIA L +S T+ ++ + KL++VN+ QAI KA+ G Sbjct: 167 FTTREKEVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGI 226 Query: 234 I 234 I Sbjct: 227 I 227 >gi|145594985|ref|YP_001159282.1| response regulator receiver [Salinispora tropica CNB-440] gi|145304322|gb|ABP54904.1| response regulator receiver [Salinispora tropica CNB-440] Length = 220 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SS LT RE L+L DG ++ EIA L +S TV Y+ KLD +R+QA+ Sbjct: 152 SSGDIPLTPRELEVLRLIADGLSNSEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVY 211 Query: 228 AIRFGYI 234 A R G + Sbjct: 212 AYRSGLV 218 >gi|311105770|ref|YP_003978623.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310760459|gb|ADP15908.1| bacterial regulatory protein, LuxR family protein 7 [Achromobacter xylosoxidans A8] Length = 237 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L+ A DG TS +++E L ++ TV + +A KL A NR A+A+A G Sbjct: 176 LTRRETEILKWAADGKTSSDVSEILAIAESTVRFHTKNAISKLGARNRTAAVARAALLGL 235 Query: 234 I 234 + Sbjct: 236 L 236 >gi|19552175|ref|NP_600177.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62389840|ref|YP_225242.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323716|dbj|BAB98342.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41325175|emb|CAF19656.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 203 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ LT RE L+LAG G ++EEIA L+ T YL A K+ A NR +A + Sbjct: 137 SAGESPLTNREEEVLELAGQGLSAEEIAVAAHLAPGTTRNYLSQAMTKVGAQNRFEAFTR 196 Query: 228 AIRFGYI 234 A G++ Sbjct: 197 ARELGWL 203 >gi|302548366|ref|ZP_07300708.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302465984|gb|EFL29077.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G T+++IAE L +S+ TV ++G+ KL A NR QA+ A G Sbjct: 162 LTRREAEILRLMAEGLTNQQIAEVLTVSLETVKTHVGNVLTKLGAGNRTQAVILAFEAG 220 >gi|297191143|ref|ZP_06908541.1| LuxR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197723336|gb|EDY67244.1| LuxR-family transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 282 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G T+ AE+LGL TV AYL SA KL A R++A+ A R G Sbjct: 220 SLTPRELDVLGCVASGATNATAAERLGLRPETVKAYLRSAMRKLGARTRLEAVVAARRAG 279 Query: 233 YI 234 + Sbjct: 280 LL 281 >gi|332668711|ref|YP_004451718.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332337748|gb|AEE44331.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 207 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 39/80 (48%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 QV T ++ + R L RE L+L DGY + EIA+ L S TV L T Sbjct: 128 QVGTLQRQVLRPRGLTFTGLASREIEVLKLVADGYDTAEIAQHLSYSERTVKNVLHDVTT 187 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 +L NR A+A A+R G I Sbjct: 188 RLQLRNRSHAVAYALREGLI 207 >gi|86747544|ref|YP_484040.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86570572|gb|ABD05129.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 242 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/63 (44%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT RE L A G T+ EI+ L ++ TV +L A+ KL+AVNR A+AKA+ Sbjct: 178 RLLTSRECEILSWAAQGKTAWEISMILRIAERTVKFHLIEASRKLNAVNRTAAVAKALSL 237 Query: 232 GYI 234 G I Sbjct: 238 GLI 240 >gi|288870280|ref|ZP_06409695.1| DNA-binding response regulator VraR [Clostridium hathewayi DSM 13479] gi|288867767|gb|EFD00066.1| DNA-binding response regulator VraR [Clostridium hathewayi DSM 13479] Length = 183 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 7/85 (8%) Query: 157 ITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 I + LE ++ SS + +LT+RE L+L +GYT EEIA ++ +S+ TV ++ Sbjct: 99 IREVLEACRRYSSQLKLFHACEVSLTDRELEILKLLDEGYTHEEIAGEIYISIATVRYHV 158 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KLD N+I A+ KA +I Sbjct: 159 KNIYQKLDVNNKILALRKAKDLNFI 183 >gi|94314355|ref|YP_587564.1| LuxR family LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358207|gb|ABF12295.1| ATP-dependent transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 904 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E LQL +GY++ IAEKL +S TV +L + K+ A +R QA+A A R G Sbjct: 843 LTPKEIRVLQLLAEGYSNSAIAEKLFVSDSTVRTHLRNINNKICAHSRTQAVAIARRLGV 902 Query: 234 I 234 I Sbjct: 903 I 903 >gi|256396518|ref|YP_003118082.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362744|gb|ACU76241.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 228 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 35/66 (53%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + R LT RE +L +G ++ EIA L ++ TV Y+ KLD +R+QA+ Sbjct: 157 REAVTRTLTPRELEVFELIAEGLSNAEIAASLFITPETVKTYVSRILTKLDLRDRVQAVV 216 Query: 227 KAIRFG 232 A R G Sbjct: 217 LAYRIG 222 >gi|317049077|ref|YP_004116725.1| LuxR family two component transcriptional regulator [Pantoea sp. At-9b] gi|316950694|gb|ADU70169.1| two component transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 210 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY++ SE +L +++ A G +V+ ++L ++ R LTERE LQ Sbjct: 103 DGYLLKDSEPELLLQQILSGAQGETVFSEVVEEYLANRPHSANPFRELTERELDVLQEVA 162 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G +++EIA L +S TV ++ + KLD +R+ A Sbjct: 163 RGLSNKEIATTLHISEETVKVHIRNLLRKLDVRSRVAA 200 >gi|148658406|ref|YP_001278611.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570516|gb|ABQ92661.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 246 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 143 NEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 N++++ + QV+ F ++ ++ + L+ RE L+L G+T++ IA+ L + Sbjct: 143 NDLVLSSPDVAAQVLNAFRQMAVDEETQNVYSPLSPRELQVLELVAAGHTNKAIAQSLDI 202 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV ++ S KL +R QA+ A+R G+I Sbjct: 203 SNQTVKNHISSILRKLAVNDRTQAVVYAMRRGWI 236 >gi|308175685|ref|YP_003922390.1| two-component response regulator DesR [Bacillus amyloliquefaciens DSM 7] gi|307608549|emb|CBI44920.1| two-component response regulator DesR [Bacillus amyloliquefaciens DSM 7] gi|328555666|gb|AEB26158.1| two-component response regulator DesR [Bacillus amyloliquefaciens TA208] gi|328914044|gb|AEB65640.1| two-component response regulator DesR [Bacillus amyloliquefaciens LL3] Length = 199 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + L+L DG ++EIA L + TV Y+ KL+ NRI+AI ++ G+ Sbjct: 138 LTEREKAVLELVADGKNTKEIANALSIKSGTVRNYVSMILDKLEVKNRIEAITRSKEKGW 197 >gi|269795278|ref|YP_003314733.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269097463|gb|ACZ21899.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 216 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE + ++ A G + +I+ +L +S HTV +LG A KLD +R Q + A R G Sbjct: 155 SLTPRERTIVKQAAQGLDNLQISRQLHISPHTVKTHLGHAMAKLDVRDRTQMVVVAFRAG 214 Query: 233 YI 234 + Sbjct: 215 LV 216 >gi|271963218|ref|YP_003337414.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506393|gb|ACZ84671.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 197 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 30/61 (49%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L LA G + EIA L L+ TV YL SA KL A NRI AI A G+ Sbjct: 137 LTERERDALALASRGASVGEIAVSLHLTEGTVRNYLSSAITKLGASNRITAIHAAQEKGW 196 Query: 234 I 234 + Sbjct: 197 L 197 >gi|119509629|ref|ZP_01628775.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119465648|gb|EAW46539.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 238 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 41/65 (63%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AA LTERE LQL +G ++ +IAE+L ++V TV ++ + KL A +R QA +A+ Sbjct: 173 AAYTLTERELEVLQLIVEGCSNADIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 232 Query: 230 RFGYI 234 R G + Sbjct: 233 RSGLV 237 >gi|145295107|ref|YP_001137928.1| hypothetical protein cgR_1050 [Corynebacterium glutamicum R] gi|140845027|dbj|BAF54026.1| hypothetical protein [Corynebacterium glutamicum R] Length = 203 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ LT RE L+LAG G ++EEIA L+ T YL A K+ A NR +A + Sbjct: 137 SAGESPLTNREEEVLELAGQGLSAEEIAVAAHLAPGTTRNYLSQAMTKVGAQNRFEAFTR 196 Query: 228 AIRFGYI 234 A G++ Sbjct: 197 ARELGWL 203 >gi|317130310|ref|YP_004096592.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475258|gb|ADU31861.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 231 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+E E LQL DGY + I++K+ L+ T+N + + K+ A +R A+ KAIR G+ Sbjct: 167 LSENEKDALQLILDGYNNRTISQKMYLAPTTINTIISNLLKKIGANDRTDAMIKAIRSGW 226 Query: 234 I 234 + Sbjct: 227 V 227 >gi|192361059|ref|YP_001981583.1| DNA-binding response regulator, LuxR family [Cellvibrio japonicus Ueda107] gi|190687224|gb|ACE84902.1| DNA-binding response regulator, LuxR family [Cellvibrio japonicus Ueda107] Length = 198 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L ++E L+LA +G T+ EI+ L LS TV YL A KL+A NR+ A A + G+ Sbjct: 138 LNDKERRALRLAAEGKTTAEISNTLHLSEGTVRNYLSEAIAKLNAANRVDAARIARQKGW 197 Query: 234 I 234 I Sbjct: 198 I 198 >gi|21220292|ref|NP_626071.1| two component response regulator [Streptomyces coelicolor A3(2)] gi|5123537|emb|CAB45293.1| putative two component response regulator [Streptomyces coelicolor A3(2)] Length = 210 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R Sbjct: 146 AGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVR 205 Query: 231 FG 232 G Sbjct: 206 HG 207 >gi|256379381|ref|YP_003103041.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255923684|gb|ACU39195.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 213 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ RET L+L DGY + EIAE+L S TV + L T + NR A+A A+R G Sbjct: 153 MSNRETEVLRLIADGYETREIAERLCYSQRTVKSILHDITNRFGLRNRAHAVAYALREGL 212 Query: 234 I 234 I Sbjct: 213 I 213 >gi|94971316|ref|YP_593364.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553366|gb|ABF43290.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 218 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 9/110 (8%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR------NLTERETS 180 GYV+ + L V G Y QV+ +E F+ R A+ LT RE Sbjct: 99 GYVLKDTPAPQLVTAVRDVYKGGKYLSSQVLGKLVEDFRARVRDAKLRPRISTLTPRERE 158 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+L +G + +EIA LGLSV TV A+ + KLD N+ Q + AI+ Sbjct: 159 ILKLLAEGNSVKEIAVLLGLSVKTVEAHKFNLMRKLDIHNKAQLVTYAIQ 208 >gi|239932122|ref|ZP_04689075.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440492|ref|ZP_06579882.1| two component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343387|gb|EFE70343.1| two component response regulator [Streptomyces ghanaensis ATCC 14672] Length = 213 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R Sbjct: 149 AGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVR 208 Query: 231 FG 232 G Sbjct: 209 HG 210 >gi|296141209|ref|YP_003648452.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029343|gb|ADG80113.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 206 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ LT RE L+ A DG + +EIA + L+ T YL SA KL NR +A + Sbjct: 140 SAGDSPLTPREADVLEFAADGASVDEIARRAHLTPGTTRNYLSSAVAKLGVANRYEATLR 199 Query: 228 AIRFGYI 234 A G+I Sbjct: 200 ARERGWI 206 >gi|269125551|ref|YP_003298921.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310509|gb|ACY96883.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 215 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 38/64 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE ++L G T+EEIA +L +S+ TV +LG+ KL A NR++ A A Sbjct: 151 AEPLTERELQVVRLVARGRTNEEIAGELFVSLSTVKTHLGNVQRKLAARNRVEIAAWAWE 210 Query: 231 FGYI 234 G + Sbjct: 211 SGIV 214 >gi|146283498|ref|YP_001173651.1| transcriptional regulator [Pseudomonas stutzeri A1501] gi|145571703|gb|ABP80809.1| probable transcriptional regulator [Pseudomonas stutzeri A1501] Length = 872 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+L G +++EIAE+L +S+HTV + KL R QA+AKA + Sbjct: 812 LSNRELTVLRLIAQGCSNQEIAEQLFISLHTVKTHARRINTKLGVARRTQAVAKAKALAW 871 Query: 234 I 234 + Sbjct: 872 L 872 >gi|124024371|ref|YP_001018678.1| LuxR transcriptional regulator [Prochlorococcus marinus str. MIT 9303] gi|123964657|gb|ABM79413.1| Bacterial regulatory protein, LuxR family protein [Prochlorococcus marinus str. MIT 9303] Length = 92 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 39/68 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SS +L+ RE + L DG T++EIAEKL +S TV+ ++ + K + NR+ + Sbjct: 8 SSVHISLSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNW 67 Query: 228 AIRFGYIC 235 A+ G IC Sbjct: 68 AMDHGKIC 75 >gi|167646079|ref|YP_001683742.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167348509|gb|ABZ71244.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 249 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 32/63 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L+LA G T E A +L LS V +L A KLD N+ A+A+AI G Sbjct: 186 GLNAREMQVLRLAAQGLTEMETAARLKLSRRGVQFHLSRAGAKLDTTNKTAAVARAISLG 245 Query: 233 YIC 235 I Sbjct: 246 LIA 248 >gi|282863505|ref|ZP_06272564.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282561840|gb|EFB67383.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 209 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA DG EIA + LS TV YL SA KL A NR A+ A G+ Sbjct: 149 LTAREAEVLELAADGAPVAEIAARASLSQGTVRNYLSSAASKLGAENRHAAVRLARERGW 208 Query: 234 I 234 + Sbjct: 209 V 209 >gi|256788589|ref|ZP_05527020.1| two component response regulator [Streptomyces lividans TK24] gi|289772481|ref|ZP_06531859.1| two component response regulator [Streptomyces lividans TK24] gi|289702680|gb|EFD70109.1| two component response regulator [Streptomyces lividans TK24] Length = 213 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R Sbjct: 149 AGSLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVR 208 Query: 231 FG 232 G Sbjct: 209 HG 210 >gi|255532850|ref|YP_003093222.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255345834|gb|ACU05160.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 206 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE L L +G T+ EIAEKL +S+ TVN + S K + N I KAI+ G Sbjct: 146 ITRREKEVLLLIAEGLTNAEIAEKLFISIPTVNTHRKSLIEKFNVKNTAMLIGKAIKLGL 205 Query: 234 I 234 I Sbjct: 206 I 206 >gi|310287209|ref|YP_003938467.1| Two-component response regulator [Bifidobacterium bifidum S17] gi|309251145|gb|ADO52893.1| Two-component response regulator [Bifidobacterium bifidum S17] Length = 154 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R L++RE L L D Y++ EIAE+LG++ TV+ + A VKLD R +A+ Sbjct: 93 SRTLSKREREVLGLYADNYSTAEIAERLGIADSTVSVVVRHAKVKLDVAARSEAV 147 >gi|218515977|ref|ZP_03512817.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 173 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T E CL+L G S EIA+ L LS + VN ++GS KL R QA+ A+R Sbjct: 111 FTSSELDCLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNI 170 Query: 234 I 234 I Sbjct: 171 I 171 >gi|27376354|ref|NP_767883.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349494|dbj|BAC46508.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 51/114 (44%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 G+ PV + G V F + L + H L+L ++ L+ Sbjct: 123 GVVIPVISPAGRTGQVWFGGAEIDLPERDLPALHLMALYAFDRVLKLRGLPAAPQLALSL 182 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 RE L LA G +S+EIA+ L ++ TV A++ S KL A R QA+ A+R Sbjct: 183 REREVLTLAAVGRSSDEIADALAITGRTVKAHIKSCCKKLGAATRTQAVMIAMR 236 >gi|146295566|ref|YP_001179337.1| two component LuxR family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409142|gb|ABP66146.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 211 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 19/113 (16%) Query: 124 LGFHKNGYVIFTSEFLMLAN--------EVIIEAHGACYQVITDFL-----ELFKKRSSA 170 L F +GY++ +S+ + N +V+++ A Y ++D L +LF+K Sbjct: 95 LSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKEIALY--VSDVLKRTSKQLFEK---- 148 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +NL+ERE +L GY+++EIA L +S TV Y+ S KL+ NR Q Sbjct: 149 TQNLSERELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQ 201 >gi|327481896|gb|AEA85206.1| transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 836 Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+L G +++EIAE+L +S+HTV + KL R QA+AKA + Sbjct: 776 LSNRELTVLRLIAQGCSNQEIAEQLFISLHTVKTHARRINTKLGVARRTQAVAKAKALAW 835 Query: 234 I 234 + Sbjct: 836 L 836 >gi|256376928|ref|YP_003100588.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921231|gb|ACU36742.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 217 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L DG ++ EIA +L LS TV Y+ KLD +R+QA+ A R G Sbjct: 153 GLSPRELEVLRLVADGRSNSEIAVELVLSPETVKTYVSRLLAKLDLRDRVQAVVPAHRTG 212 Query: 233 YI 234 + Sbjct: 213 LV 214 >gi|198283772|ref|YP_002220093.1| LuxR family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665417|ref|YP_002426403.1| autoinducer-binding transcriptional regulator, LuxR family [Acidithiobacillus ferrooxidans ATCC 23270] gi|71044540|gb|AAV53702.2| AfeR [Acidithiobacillus ferrooxidans] gi|198248293|gb|ACH83886.1| transcriptional regulator, LuxR family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517630|gb|ACK78216.1| autoinducer-binding transcriptional regulator, LuxR family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 237 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 8/114 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI--IEA-HGACYQVITDFLELFKKRSSAARNLTERETS 180 L + G + T+E+ A ++ ++A H + +VI L+ A L+ RE Sbjct: 128 LTLARAGETVTTAEWQAKACHILWLVQAVHLSMIRVIAPKLQ-----PEIAVQLSCREVE 182 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G+G TS EIA L ++ TVN ++ A KL+AVN+ A+ +A G + Sbjct: 183 VLRWTGEGKTSGEIANILNITERTVNFHISKAMAKLNAVNKTAAVLQAAMLGLL 236 >gi|117928597|ref|YP_873148.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649060|gb|ABK53162.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 225 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L+L DG +++EI ++LGLS TV ++L KL +R + +A A+R G Sbjct: 163 DLSSREIEVLRLVADGRSNKEIGDQLGLSALTVKSHLARIARKLGTGDRAEMVALAMRAG 222 Query: 233 YI 234 I Sbjct: 223 II 224 >gi|271969348|ref|YP_003343544.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270512523|gb|ACZ90801.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 202 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 5/91 (5%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAA----RN-LTERETSCLQLAGDGYTSEEI 194 ML + E GA +V + + ++AA RN L+ RE L++A +G EI Sbjct: 103 MLKDAPPAELAGAIRRVAGGERVMDPQLAAAAITGRRNPLSPREVEVLRMASEGAEPAEI 162 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 A +L L+ TV YLG+ KLDA NR+ A+ Sbjct: 163 ASRLHLTKGTVRNYLGAIVTKLDARNRLDAV 193 >gi|302523631|ref|ZP_07275973.1| response regulator receiver [Streptomyces sp. AA4] gi|302432526|gb|EFL04342.1| response regulator receiver [Streptomyces sp. AA4] Length = 224 Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 11/118 (9%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA----RNLTER 177 +G+++ ++ L N V A G +I F + + S+A +LT R Sbjct: 104 SGFLLKDAQPAELVNAVRTVARGEALLAPTVTRALIGQFADRIRPASAAGPGPLEHLTPR 163 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L G ++ EIAE+L LS+ TV Y+ KLD +R+QA+ A R G + Sbjct: 164 EREVLVQLARGLSNAEIAEELVLSIETVKTYVSRILAKLDLRDRVQAVVLAYRTGLVS 221 >gi|332669837|ref|YP_004452845.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338875|gb|AEE45458.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 222 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 30/51 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE + G G ++ EIA L L V TV ++G+ KLDA NR+Q Sbjct: 159 TLTEREREVAEAVGAGMSNAEIARTLHLGVATVKTHVGNVLAKLDATNRVQ 209 >gi|167564970|ref|ZP_02357886.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167572172|ref|ZP_02365046.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 238 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 39/68 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + +LT RE LQ AG G T+ EI++ LG+S TV +L +A K+ A NR QA+ Sbjct: 171 RRQGSCDLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVV 230 Query: 227 KAIRFGYI 234 A G I Sbjct: 231 IASARGLI 238 >gi|327190710|gb|EGE57792.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 240 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T E CL+L G S EIA+ L LS + VN ++GS KL R QA+ A+R Sbjct: 178 FTSSELDCLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNI 237 Query: 234 I 234 I Sbjct: 238 I 238 >gi|271965882|ref|YP_003340078.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509057|gb|ACZ87335.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 219 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT RE L+L DG ++ EIA L +S TV Y+ KLD +R+QA+ Sbjct: 152 TPAETALTPRELEVLRLIADGLSNSEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVY 211 Query: 228 AIRFGYI 234 A R G + Sbjct: 212 AYRRGLV 218 >gi|154251602|ref|YP_001412426.1| regulatory protein LuxR [Parvibaculum lavamentivorans DS-1] gi|154155552|gb|ABS62769.1| regulatory protein LuxR [Parvibaculum lavamentivorans DS-1] Length = 921 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 40/61 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L +G++++ +A++L LS +TV +L + KL NR+QA++ A FG Sbjct: 860 LTDREREILRLVSNGFSNKALADRLSLSTNTVKWHLRNIFEKLQIGNRMQAVSVARHFGL 919 Query: 234 I 234 I Sbjct: 920 I 920 >gi|226365940|ref|YP_002783723.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244430|dbj|BAH54778.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 220 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARN------ 173 L +G+++ +E L+ A V+ + +T L ++ +RS+A R Sbjct: 97 LSIGASGFMLKDAPAEELIRAVRVVADGEALLAPTVTRRLIADVTSRRSTARRKPAALSA 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIAE+L ++ TV ++G KLD +R QA+ A G Sbjct: 157 LTPREREVLELIARGMSNTEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGL 216 Query: 234 IC 235 + Sbjct: 217 VT 218 >gi|48375112|gb|AAT42219.1| PcoR [Pseudomonas fluorescens] Length = 234 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/175 (26%), Positives = 80/175 (45%), Gaps = 24/175 (13%) Query: 74 DDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D +FH + LP++W + E + E++ VR +G+ P+ + Sbjct: 68 DPVVFHCLNSSLPLVWTKENFINPPELQLYEAASASGVR--------SGLCMPIHGPRGE 119 Query: 129 NGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFL-ELFKKRSSAARN-------LTERET 179 G + F ++ A+ +I A G + ++ D+L E F+K +A+ LT RE Sbjct: 120 FGMLNFITDEKSPAD--LINAQGLPQFALMRDYLIESFQKLQNASEKEFETPPXLTAREL 177 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL+ G TS EI+ L + TVN ++ + K +A +R A+ IR G + Sbjct: 178 ECLKWVAAGKTSWEISRILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLV 232 >gi|53717016|ref|YP_106048.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei ATCC 23344] gi|67643368|ref|ZP_00442115.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|124382942|ref|YP_001025964.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10229] gi|126445405|ref|YP_001061548.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 668] gi|126446264|ref|YP_001078053.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10247] gi|126457742|ref|YP_001074487.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 1106a] gi|134284195|ref|ZP_01770887.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|167003599|ref|ZP_02269385.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|167741352|ref|ZP_02414126.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167818528|ref|ZP_02450208.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167826910|ref|ZP_02458381.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|167848430|ref|ZP_02473938.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167896980|ref|ZP_02484382.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167905359|ref|ZP_02492564.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|167921599|ref|ZP_02508690.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|217423225|ref|ZP_03454727.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226194550|ref|ZP_03790147.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237507990|ref|ZP_04520705.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242313995|ref|ZP_04813012.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254176241|ref|ZP_04882899.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254189375|ref|ZP_04895885.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254195237|ref|ZP_04901665.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|254200901|ref|ZP_04907266.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|254204867|ref|ZP_04911220.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|254262915|ref|ZP_04953780.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254299430|ref|ZP_04966879.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|254358982|ref|ZP_04975254.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|52422986|gb|AAU46556.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|126224896|gb|ABN88401.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] gi|126231510|gb|ABN94923.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|126239118|gb|ABO02230.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10247] gi|134244398|gb|EBA44504.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|147748513|gb|EDK55588.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|147754453|gb|EDK61517.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|148028169|gb|EDK86129.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|156105362|gb|ABU49180.1| BpsR4 [Burkholderia pseudomallei] gi|157809517|gb|EDO86687.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157937053|gb|EDO92723.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|160697283|gb|EDP87253.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|169651984|gb|EDS84677.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|217394133|gb|EEC34153.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225933378|gb|EEH29368.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|235000195|gb|EEP49619.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238524705|gb|EEP88137.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|242137234|gb|EES23637.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|243060902|gb|EES43088.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|254213917|gb|EET03302.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|261827048|gb|ABM99276.2| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] Length = 238 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 39/68 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + +LT RE LQ AG G T+ EI++ LG+S TV +L +A K+ A NR QA+ Sbjct: 171 RRQGSCDLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVV 230 Query: 227 KAIRFGYI 234 A G I Sbjct: 231 IASARGLI 238 >gi|149184470|ref|ZP_01862788.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148831790|gb|EDL50223.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 140 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 1/105 (0%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G F+SE LA V+ H + R++ +L++RE L+L G G Sbjct: 35 GSAGFSSEPSELAEGVLTATHSILSSAHLQICRIMD-RANPEISLSQRERQVLELMGSGK 93 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EI L +S TV Y KL+A +R+ A +A++ G + Sbjct: 94 TSVEIGTILAISPETVKTYTKRLYEKLEANDRVTATVRALKLGLV 138 >gi|171742019|ref|ZP_02917826.1| hypothetical protein BIFDEN_01123 [Bifidobacterium dentium ATCC 27678] gi|283456847|ref|YP_003361411.1| two-component response regulator [Bifidobacterium dentium Bd1] gi|171277633|gb|EDT45294.1| hypothetical protein BIFDEN_01123 [Bifidobacterium dentium ATCC 27678] gi|283103481|gb|ADB10587.1| Two-component response regulator [Bifidobacterium dentium Bd1] Length = 223 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 38/67 (56%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F + ++ + L+ RE ++L G TS IAE+ GL+V +VN YL A KL A Sbjct: 147 FARILREPKTGIARLSGREIEIIELCRQGNTSTLIAERTGLTVASVNTYLQRACEKLGAR 206 Query: 220 NRIQAIA 226 NR+Q ++ Sbjct: 207 NRVQLVS 213 >gi|317403306|gb|EFV83822.1| LuxR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 218 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 5/73 (6%) Query: 156 VITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++T L L +R+ +R+ LTERET+ + A G ++ +IA+ LG++ TV A+L Sbjct: 126 LVTRLLRLVTERAQDSRSWDNGTLTERETTVARYAASGQSNAQIADALGITERTVKAHLS 185 Query: 211 SATVKLDAVNRIQ 223 + KL+ +R+Q Sbjct: 186 AVFEKLEVTDRLQ 198 >gi|167578890|ref|ZP_02371764.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167616988|ref|ZP_02385619.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257140903|ref|ZP_05589165.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] Length = 238 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 39/68 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + +LT RE LQ AG G T+ EI++ LG+S TV +L +A K+ A NR QA+ Sbjct: 171 RRQGSCDLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVV 230 Query: 227 KAIRFGYI 234 A G I Sbjct: 231 IASARGLI 238 >gi|253572144|ref|ZP_04849548.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|251838324|gb|EES66411.1| transcriptional regulator [Bacteroides sp. 1_1_6] Length = 230 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G S+EI++ L +SVHTVN + + K++ N ++AI A + G Sbjct: 169 LTKREVEILKLVNKGMFSKEISDSLSISVHTVNNHRQNILQKMNTDNVVEAINYARKLG 227 >gi|37520382|ref|NP_923759.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211375|dbj|BAC88754.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 212 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 40/68 (58%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ A L+ERE L+L DG T+ EI +L ++ TV ++ + KL +R+QA Sbjct: 144 QAGADNPLSEREMEVLKLIADGLTNAEIGRRLYIASGTVRVHVSNIIAKLGVNDRVQAAV 203 Query: 227 KAIRFGYI 234 +A+R G+I Sbjct: 204 RALREGWI 211 >gi|159898519|ref|YP_001544766.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus ATCC 23779] gi|159891558|gb|ABX04638.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 1019 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 41/62 (66%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + ++L G++++EIA++L ++++T+ +L + KL +R QAIA+A R Sbjct: 956 LSERELTVIRLLAAGFSNQEIAQQLVVTLNTIKTHLKNIYSKLAVTSRTQAIARARRLNL 1015 Query: 234 IC 235 I Sbjct: 1016 IA 1017 >gi|307331258|ref|ZP_07610381.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883070|gb|EFN14133.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 206 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/48 (52%), Positives = 30/48 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE L+LA DG + EIA++ GLS TV YL +A KL A NR Sbjct: 146 LTAREAELLELAADGASIAEIAQRAGLSQGTVRNYLSAAAAKLGAENR 193 >gi|297161600|gb|ADI11312.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 216 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 154 SLTEREREVLALIADGRSNREIARALILSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 213 >gi|302546480|ref|ZP_07298822.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302464098|gb|EFL27191.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 218 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 36/60 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L L DG ++ EIA +L LS TV ++ + +KLD +R QA A+R G Sbjct: 156 SLTDREREVLGLIADGRSNREIARRLVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 215 >gi|296120645|ref|YP_003628423.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296012985|gb|ADG66224.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 220 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 9/115 (7%) Query: 129 NGYVIFTS---EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA------RNLTERET 179 +GY++ TS E EV+ Q+ LEL A +L+ RE Sbjct: 106 DGYLLKTSSAEEIARAIEEVLSGGASMTPQIARKVLELMSNTPPKATVPKSPSDLSLREQ 165 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G T +EIA L LS HT++ +L + KL NR A+A AIR G + Sbjct: 166 DVLKQVVRGLTKDEIARALKLSPHTIDTHLRNIYQKLHVHNRAGAVAIAIRDGLV 220 >gi|229916670|ref|YP_002885316.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] gi|229468099|gb|ACQ69871.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] Length = 230 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L DG ++ +I++ L +S TV ++ S K+D +R QA+ AIR G+ Sbjct: 168 LSRREVEVLHLLADGRSNRDISDMLFISEKTVKNHVSSVLRKMDVNDRTQAVVDAIRRGW 227 Query: 234 I 234 + Sbjct: 228 V 228 >gi|53721347|ref|YP_110332.1| LuxR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|52211761|emb|CAH37760.1| putative LuxR-family transcriptional regulator [Burkholderia pseudomallei K96243] Length = 234 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 39/68 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + +LT RE LQ AG G T+ EI++ LG+S TV +L +A K+ A NR QA+ Sbjct: 167 RRQGSCDLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVV 226 Query: 227 KAIRFGYI 234 A G I Sbjct: 227 IASARGLI 234 >gi|94314242|ref|YP_587451.1| transcriptional regulator two component heavy metal regulatory response ZniR [Cupriavidus metallidurans CH34] gi|93358094|gb|ABF12182.1| transcriptional regulator two component heavy metal regulatory response ZniR [Cupriavidus metallidurans CH34] Length = 206 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 39/70 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R+ L+ERE L + G TS EIA LGLS TV+ ++ A KL R++A Sbjct: 135 QQRTPQNVTLSEREIEALSWSARGKTSGEIATILGLSKRTVDFHIDRAREKLGVATRVEA 194 Query: 225 IAKAIRFGYI 234 + +A G+I Sbjct: 195 VVRAATEGFI 204 >gi|299771984|ref|YP_003734010.1| Transcriptional activator protein phzR [Acinetobacter sp. DR1] gi|284158686|gb|ADB80058.1| AqsR [Acinetobacter sp. DR1] gi|298702072|gb|ADI92637.1| Transcriptional activator protein [Acinetobacter sp. DR1] Length = 238 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ +G TS EIA+ LG++ TVN +L ++ KL+ N+I A +A+ G Sbjct: 178 LTNREKEVLRWTAEGKTSAEIAQILGVTERTVNFHLCNSMQKLNVNNKISAAIRAVMLG 236 >gi|260459597|ref|ZP_05807851.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259034399|gb|EEW35656.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 222 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 5/105 (4%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 VRLG GY + ++ ++ AHG ++ ++++ K + LT RE Sbjct: 109 VRLG--AQGYCFQFDDPHIIFETILAVAHG---RICIPYIDINKVNDTPLAQLTVREREL 163 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L + DG+T+ +IA + G+S +TV +L + KLD NR A+A Sbjct: 164 LAVLSDGWTNLQIATRTGISENTVKYHLKNLYDKLDVRNRAMAVA 208 >gi|167913657|ref|ZP_02500748.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 112] Length = 238 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/68 (42%), Positives = 39/68 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + +LT RE LQ AG G T+ EI++ LG+S TV +L +A K+ A NR QA+ Sbjct: 171 RRQGSCDLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVV 230 Query: 227 KAIRFGYI 234 A G I Sbjct: 231 IASARGLI 238 >gi|89899800|ref|YP_522271.1| ATP-dependent transcription regulator LuxR [Rhodoferax ferrireducens T118] gi|89344537|gb|ABD68740.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Rhodoferax ferrireducens T118] Length = 930 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E LQL +GY++ +AEKL +S TV +L + +K A +R QA+A A R G Sbjct: 869 LTRKEIRVLQLLVEGYSNSAMAEKLFVSDSTVRTHLRNINMKFGAHSRTQAVAIARRLGL 928 Query: 234 I 234 I Sbjct: 929 I 929 >gi|328883924|emb|CCA57163.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 222 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 33/53 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L + G G+T+ EIAE+L L+ TV ++G K A +R+QA+ Sbjct: 158 TLTEREREILTVIGQGWTNTEIAERLHLAESTVKTHVGRILAKTGARDRVQAV 210 >gi|325283032|ref|YP_004255573.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] gi|324314841|gb|ADY25956.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] Length = 219 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 4/75 (5%) Query: 164 FKKRSSAARNLTE----RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F ++ A +LTE RE L+ A G +++EIA LG+S TV +LG+ KL+ Sbjct: 140 FSAQAPAEMDLTEDLSPRELEVLRAAARGGSNKEIARALGISPRTVQVHLGNVFSKLNVG 199 Query: 220 NRIQAIAKAIRFGYI 234 +R +A+ IR G++ Sbjct: 200 SRTEAVLAGIRRGWV 214 >gi|312196323|ref|YP_004016384.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227659|gb|ADP80514.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 221 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 4/99 (4%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIA 195 L+ A E ++ A ++I D + R + AR L TERE+ L+L G G ++ EIA Sbjct: 119 LVAAGESLL-APSVTRRLIADVVGRGAARPALARRLDELTERESETLRLLGRGLSNSEIA 177 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S HTV +++ S KL +R QA+ A G I Sbjct: 178 ATLVVSEHTVKSHVSSVLTKLGLRDRAQAVVFAYESGLI 216 >gi|167646051|ref|YP_001683714.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167348481|gb|ABZ71216.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 77 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 39/58 (67%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE C++LA G T+ E A+++ ++ TV +LG+A KL A N+++A+ A++ Sbjct: 14 SLTAREIECIRLAALGLTTGETAQRIQVAERTVEFHLGNAMRKLGATNKLRAVVIAMQ 71 >gi|323492273|ref|ZP_08097431.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323313586|gb|EGA66692.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 222 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 5/76 (6%) Query: 155 QVITDFLELFK-----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +V D++E F+ S A NLT+RE ++L G G ++ +IAE+L +S +TV +L Sbjct: 134 KVAQDYIEHFRCANTVTTSQAYANLTKREKEIMRLLGHGASNIQIAEELFVSENTVKTHL 193 Query: 210 GSATVKLDAVNRIQAI 225 + K++A NR+QA+ Sbjct: 194 HNIFKKINAKNRLQAL 209 >gi|326202012|ref|ZP_08191882.1| two component transcriptional regulator, LuxR family [Clostridium papyrosolvens DSM 2782] gi|325987807|gb|EGD48633.1| two component transcriptional regulator, LuxR family [Clostridium papyrosolvens DSM 2782] Length = 216 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 9/104 (8%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY-------QVITDF--LELFKKRSSAARNLTERETS 180 GYV+ +E +L + H Y +++ +F + L+++ S A NLT RE Sbjct: 102 GYVLKDAESSVLIEAIRSVYHDQTYIQPNMTGELVKEFNRVTLYEQDKSIANNLTNREVE 161 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+L +G ++EIA+ L +S TV ++ + KLD +R QA Sbjct: 162 VLKLIAEGMINKEIAKTLYISEKTVKNHISNIFKKLDVNDRTQA 205 >gi|149187161|ref|ZP_01865459.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] gi|148838697|gb|EDL55636.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] Length = 227 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 48/76 (63%), Gaps = 5/76 (6%) Query: 155 QVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +++ +++ +++R + + LT+RE ++L GDG ++ EIA+ L +S +TV A+L Sbjct: 138 KLVYEYVNFYRRRQCSKTSPYYTKLTKREQQIIKLLGDGASNTEIADTLFVSENTVKAHL 197 Query: 210 GSATVKLDAVNRIQAI 225 +A K+ NR+QA+ Sbjct: 198 HNAFKKIKVKNRLQAL 213 >gi|156744138|ref|YP_001434267.1| ATP-dependent transcription regulator LuxR [Roseiflexus castenholzii DSM 13941] gi|156235466|gb|ABU60249.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 309 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L +G ++ EIAEKL LSV TV ++ KL +R+ A KA G Sbjct: 248 LTEREMDVLKLVAEGLSNPEIAEKLYLSVGTVKTHVKHIYGKLGVDDRVTAAGKARELGL 307 Query: 234 I 234 I Sbjct: 308 I 308 >gi|90023460|ref|YP_529287.1| two component LuxR family transcriptional regulator [Saccharophagus degradans 2-40] gi|89953060|gb|ABD83075.1| two component transcriptional regulator, LuxR family [Saccharophagus degradans 2-40] Length = 205 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+++E L+LAG G + EIA L LS TV YL A KL+A NRI A A + G+ Sbjct: 145 LSDKERKALRLAGSGKKTAEIANDLCLSEGTVRNYLSEAISKLNATNRIDAARIARQKGW 204 Query: 234 I 234 + Sbjct: 205 L 205 >gi|330807579|ref|YP_004352041.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375687|gb|AEA67037.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 911 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 38/67 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ L+ RE + LQL G +++EI+E+L +S+HTV + KL R QA+A+ Sbjct: 844 AAPVETLSSRERAVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVAR 903 Query: 228 AIRFGYI 234 A G + Sbjct: 904 AKALGLL 910 >gi|289550400|ref|YP_003471304.1| Two component transcriptional regulator VraR [Staphylococcus lugdunensis HKU09-01] gi|315660134|ref|ZP_07912991.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|289179932|gb|ADC87177.1| Two component transcriptional regulator VraR [Staphylococcus lugdunensis HKU09-01] gi|315494815|gb|EFU83153.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 209 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 3/109 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLA 185 + Y++ T+ +A V HG +V+ KKR+ LTERE L L Sbjct: 100 DSYILKTTSAKDIAEAVRKTYHGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLI 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 160 AKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|190890862|ref|YP_001977404.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190696141|gb|ACE90226.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 240 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T E CL+L G S EIA+ L LS + VN ++GS KL R QA+ A+R Sbjct: 178 FTSSELDCLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNI 237 Query: 234 I 234 I Sbjct: 238 I 238 >gi|167838741|ref|ZP_02465600.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 137 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 1/84 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 G + + + L+ +R + +LT RE LQ AG G T+ EI++ LG+S T+ +L Sbjct: 55 GFVHAAMQELLDCRLRRQGSC-DLTARERESLQWAGRGKTAWEISKILGISERTIVFHLS 113 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 +A K+ A NR QA+ A G I Sbjct: 114 NAARKIGANNRAQAVVMASARGLI 137 >gi|186681008|ref|YP_001864204.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463460|gb|ACC79261.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 225 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL+ RE L+L DG ++ EIAEKL LS +T+ ++ KL +R+QA A+R G Sbjct: 164 NLSARELEVLKLMVDGLSNPEIAEKLYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRSG 223 Query: 233 YI 234 + Sbjct: 224 LV 225 >gi|186681582|ref|YP_001864778.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464034|gb|ACC79835.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 226 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L G ++EEIA+ L ++V TV A+L S KL +R QAI A++ G Sbjct: 163 HLTEREQEVLYWLTQGASNEEIAKHLYVTVATVKAHLTSIFEKLKVTSRTQAIVAALKLG 222 Query: 233 YI 234 + Sbjct: 223 LV 224 >gi|312195247|ref|YP_004015308.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311226583|gb|ADP79438.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 220 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L DG+ + IA +LGLS TV ++ S KL A +R AI +A R G Sbjct: 156 QLTDREREVLVLVADGWPNHRIAHRLGLSAKTVANHVSSILAKLHAPDRAAAILQARRAG 215 >gi|313204085|ref|YP_004042742.1| transcriptional regulator, luxr family [Paludibacter propionicigenes WB4] gi|312443401|gb|ADQ79757.1| transcriptional regulator, LuxR family [Paludibacter propionicigenes WB4] Length = 220 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 10/152 (6%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 +I+E V+ S L G +P P+ F + +++ ++E+ ++ ++ Sbjct: 64 NIEEVIVLSDCFPRSNWLFMGDIPDESFLMPLTASFERANFILKSNEYDVITMAILDTLS 123 Query: 151 GACY------QVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVH 203 G Y Q+I D KK SS R+L T E +QL G T++EIA+ LS H Sbjct: 124 GKKYFCSEALQIIMDGHNR-KKESSGKRDLLTHTELELIQLFTQGKTAKEIADSRCLSHH 182 Query: 204 TVNAYLGSATVKLDAVNRIQAIAK-AIRFGYI 234 T+N + + KL+ +N +Q + K A++ G + Sbjct: 183 TINTHRKNIFRKLE-INNVQELIKFALKNGLV 213 >gi|290962896|ref|YP_003494078.1| two-component regulator [Streptomyces scabiei 87.22] gi|260652422|emb|CBG75555.1| putative two-component regulator [Streptomyces scabiei 87.22] Length = 222 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE L G G+T+ EIAE+L L+ TV ++G K+ A +RIQA+ A G Sbjct: 157 SLSEREHEVLVAIGQGWTNAEIAERLVLTESTVKKHVGRVLAKIGARDRIQAVITAYDAG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|257054297|ref|YP_003132129.1| two component transcriptional regulator, LuxR family [Saccharomonospora viridis DSM 43017] gi|256584169|gb|ACU95302.1| two component transcriptional regulator, LuxR family [Saccharomonospora viridis DSM 43017] Length = 208 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ DG T+ +IA +L L+ TV YL +A KL A NR +A A G Sbjct: 147 QLTDRERELLRQVADGATNRDIARRLHLAEGTVRNYLSAAMAKLGARNRTEAAKAARERG 206 Query: 233 YI 234 +I Sbjct: 207 WI 208 >gi|116620395|ref|YP_822551.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223557|gb|ABJ82266.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 200 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 4/106 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +GY++ + LAN + GA +VI EL + + A LT+RE L+ AG+G Sbjct: 99 SGYLLKDAPASTLANAIRRIRAGA--RVIDP--ELAAEAWTEADPLTDRERQVLRHAGEG 154 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA L LS TV YL A KL A NR +A A + G++ Sbjct: 155 RSGAEIAGLLNLSEGTVRNYLSEAISKLGAANRTEAARIAHQRGWL 200 >gi|328882240|emb|CCA55479.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 226 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 5/92 (5%) Query: 149 AHGACYQVITDFL---ELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 A ++I DF +K ++A R LT RET L+L G +++EIA+ L L+ Sbjct: 131 APSVTRRLIADFAASRPAPRKDTTALRLNGLTPRETEVLELIARGLSNQEIADHLVLAEQ 190 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 TV ++G KLD +R QA+ A G + Sbjct: 191 TVKTHIGRVLAKLDLRDRAQAVVFAYESGLVT 222 >gi|290961496|ref|YP_003492678.1| two component response regulator [Streptomyces scabiei 87.22] gi|260651022|emb|CBG74140.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 213 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 151 SLTEREKEVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210 Query: 233 Y 233 Sbjct: 211 M 211 >gi|239930346|ref|ZP_04687299.1| putative two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438691|ref|ZP_06578081.1| two-component regulator [Streptomyces ghanaensis ATCC 14672] gi|291341586|gb|EFE68542.1| two-component regulator [Streptomyces ghanaensis ATCC 14672] Length = 219 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 18/124 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA------------HGACYQVITDFLELFKK-RSSA 170 LG +GYV+ + +A+ ++EA GA +I ++L+L + R+ Sbjct: 99 LGAGASGYVLKS-----VADRDLVEACRATMRGEPFLYPGAVNALIRNYLDLARDGRNLP 153 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + +T+RE L+L +G TS++IA+ L +S TV + + KL +R++ AIR Sbjct: 154 PKAITDREEEILKLVAEGNTSQQIADLLVISPKTVERHRANLLSKLGLKDRLELTRYAIR 213 Query: 231 FGYI 234 G I Sbjct: 214 VGLI 217 >gi|146280789|ref|YP_001170942.1| DNA-binding response regulator CorR [Pseudomonas stutzeri A1501] gi|145568994|gb|ABP78100.1| DNA-binding response regulator CorR [Pseudomonas stutzeri A1501] Length = 218 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 4/98 (4%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFL----ELFKKRSSAARNLTERETSCLQLAG 186 Y T E L+ V+++ +V+T+ L ++ + + +LT RE L LAG Sbjct: 105 YSHATREHLLEGIRVLLKGGDWLPRVLTERLLGQWRRMRQLAESKTSLTLREREILSLAG 164 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G ++ EIAE+L LS HT+ +++ + K+ A NR +A Sbjct: 165 KGLSNAEIAEQLCLSPHTIKSHIHNLLRKIGASNRAEA 202 >gi|37522644|ref|NP_926021.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] gi|35213645|dbj|BAC91016.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 232 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQL G ++++IA+ L LSV+TV ++ KL A NR QA+ KA+ G Sbjct: 172 LSRREREILQLIQQGLSNQQIADHLYLSVNTVKNHMSRIFTKLSATNRTQAVLKAMGTG 230 >gi|115523303|ref|YP_780214.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517250|gb|ABJ05234.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 237 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 74/195 (37%), Gaps = 36/195 (18%) Query: 65 PN-ILIETYGDDFLFHF---------------NSGLLPIIWQSIQEETVIESSGQLSVRL 108 PN +L+ TY D ++ + +LPI W +++ +T + Sbjct: 48 PNPVLLLTYDDAWVKRYVERNYFSIDPVVVAGRDAVLPIDWMAVEHDT--PEARHFFAEA 105 Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--- 165 E + G+ P+R G + F + N H + + DF L Sbjct: 106 ESFGVGRHGLTLPIR------GPAAERALFTVTTNATDDHWHRWRFSYMKDFHLLAHYLH 159 Query: 166 ---------KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + R L+ RE CL G T +IA +L LS V+ YL +A KL Sbjct: 160 DRAMRLAGLRLDHVMRPLSSRERQCLNGLVRGRTPGQIAGELDLSGSAVHGYLRTARRKL 219 Query: 217 DAVNRIQAIAKAIRF 231 D QAIAKA+R Sbjct: 220 DCATVEQAIAKAVRL 234 >gi|329947902|ref|ZP_08294834.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523526|gb|EGF50624.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 203 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET LQ A DG T E+A ++ LS T +L A K DA R A+ A + G+ Sbjct: 141 LTARETEVLQAAADGATVAEVARRVHLSEGTTRNHLSQAMAKTDAPTRAAAVHIAAQKGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|320532002|ref|ZP_08032895.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135766|gb|EFW27821.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 203 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET LQ A DG T E+A ++ LS T +L A K DA R A+ A + G+ Sbjct: 141 LTARETEVLQAAADGATVAEVARRVHLSEGTTRNHLSQAMAKTDAPTRAAAVHIAAQKGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|313901612|ref|ZP_07835050.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313468115|gb|EFR63591.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 272 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G T++EIA++L +S+ TV A+ + KLD + ++ AIR G Sbjct: 207 GLTERETEVLTLIAQGLTNQEIADRLFISIKTVQAHRSNIMEKLDLHDAVELTKYAIRHG 266 Query: 233 YIC 235 I Sbjct: 267 LIS 269 >gi|159044364|ref|YP_001533158.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912124|gb|ABV93557.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 265 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 75/192 (39%), Gaps = 35/192 (18%) Query: 65 PNILIETYGDDFLFHFNS-------GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG 117 P ++ Y DD L+ + +P +W + E T RL F Sbjct: 79 PREWVDIYVDDHLYEIDPIPALAQRRAVPFLWSEVAELT----------RLAEEQAAFLE 128 Query: 118 IAFPVRLG-------FHKN---GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 + P R+G F N GYV F +V A YQ+++ + L R Sbjct: 129 RSMPARVGDGVAIQVFGPNMRHGYVGMG--FGDRPRDVT-APQLAEYQLVSQLMHLRACR 185 Query: 168 SSAARNLTE-----RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 RN +E RET L G + IA+ LGLS HTV+ + KL+ +R Sbjct: 186 LIEERNRSEIALSARETEVLGWMARGKSKTVIADILGLSPHTVDTLVRRIFRKLEVFDRT 245 Query: 223 QAIAKAIRFGYI 234 AI KAI G + Sbjct: 246 AAILKAINLGLV 257 >gi|15599116|ref|NP_252610.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116051961|ref|YP_789196.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|296387556|ref|ZP_06877031.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|9950105|gb|AAG07308.1|AE004809_8 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115587182|gb|ABJ13197.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 906 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 39/66 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA L+ RE + L+L G +++EI+E+L +S+HTV ++ KL R QA+A+A Sbjct: 840 SAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLGVERRTQAVARA 899 Query: 229 IRFGYI 234 G + Sbjct: 900 KHMGLL 905 >gi|262281348|ref|ZP_06059129.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus RUH2202] gi|262257174|gb|EEY75911.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus RUH2202] Length = 238 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ +G TS EIA+ LG++ TVN +L ++ KL+ N+I A +A+ G Sbjct: 178 LTNREKEVLRWTAEGKTSAEIAQILGVTERTVNFHLCNSMQKLNVNNKISAAIRAVMLG 236 >gi|269125776|ref|YP_003299146.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310734|gb|ACY97108.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 220 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 43/80 (53%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 +V+T F ++ + +A LTERE LQL G ++ EIA+ L LS TV ++ + Sbjct: 137 ARRVLTYFADMPDPKQTAFPELTEREREVLQLIAQGRSNGEIAQTLFLSPKTVRNHVSNI 196 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 +KL +R QAI A G Sbjct: 197 FMKLHVADRAQAIVLAREAG 216 >gi|119718601|ref|YP_925566.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119539262|gb|ABL83879.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 1006 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 39/69 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + S LT RE+ LQL G ++ EIA++L +S TV+ ++ + KLDA R +A Sbjct: 937 RTESVPDALTPRESEVLQLVAQGRSNGEIAKQLFISAKTVSVHVSNILGKLDASGRTEAA 996 Query: 226 AKAIRFGYI 234 A A R G I Sbjct: 997 AIARRRGLI 1005 >gi|329939589|ref|ZP_08288890.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301159|gb|EGG45054.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 204 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L+ A DG T+ E+A L LS TV YL +A KL A NR +A+ A Sbjct: 141 ANPLTDREREVLRAAADGATNAELATALHLSQGTVRNYLSTAIQKLTARNRTEAVRIARE 200 Query: 231 FGYI 234 G++ Sbjct: 201 KGWL 204 >gi|327251604|gb|EGE63290.1| transcriptional regulator, LuxR family protein [Escherichia coli STEC_7v] Length = 148 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + Sbjct: 74 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 133 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 134 IELIKTALRMG-VC 146 >gi|323704464|ref|ZP_08116042.1| two component transcriptional regulator, LuxR family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535926|gb|EGB25699.1| two component transcriptional regulator, LuxR family [Thermoanaerobacterium xylanolyticum LX-11] Length = 210 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 5/98 (5%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ ++ L + I ++G Y +I + L +++ ++LT+RE L L Sbjct: 100 GYILKDADSDELIKAIRIISNGGVYIHPSLIREIESL--EKNECKKDLTDREFEILNLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 158 EGYSNKEIADKLFLSEKTVKNHVYNIFRKLDVKDRTQA 195 >gi|317129068|ref|YP_004095350.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474016|gb|ADU30619.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 231 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 40/67 (59%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A T++E LQL DG + EIA+KL + TV+ + S K++A +R +A+ K Sbjct: 161 SKVASIFTKKEQEILQLILDGCNNGEIADKLFYANSTVSTNISSILKKMEANDRTEAMVK 220 Query: 228 AIRFGYI 234 AIR G++ Sbjct: 221 AIRNGWV 227 >gi|239978741|ref|ZP_04701265.1| two-component system response regulator [Streptomyces albus J1074] gi|291450632|ref|ZP_06590022.1| two-component system response regulator [Streptomyces albus J1074] gi|291353581|gb|EFE80483.1| two-component system response regulator [Streptomyces albus J1074] Length = 222 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 160 SLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 219 Query: 233 Y 233 Sbjct: 220 M 220 >gi|213962803|ref|ZP_03391063.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena Capno] gi|213954460|gb|EEB65782.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena Capno] Length = 214 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +TD + F S+ LT RE L LA +G S+EI+EKL +S+HTVN + + KL Sbjct: 144 LTDEVVPFVIESATDVLLTPREREILALAKEGMFSKEISEKLNISIHTVNRHRQNILEKL 203 Query: 217 DAVNRIQAI 225 N I+AI Sbjct: 204 QVDNIIEAI 212 >gi|329297529|ref|ZP_08254865.1| LuxR family two component transcriptional regulator [Plautia stali symbiont] Length = 198 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY + SE +L +V+ A G +V+ ++L + ++ R LTERE LQ Sbjct: 91 DGYQLKDSEPELLLAQVMRGAQGENVFREVVAEYLATRQPSANPFRQLTERELDVLQEVA 150 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G +++EIA L +S TV ++ + KLD +R+ A Sbjct: 151 RGLSNKEIAATLHISEETVKVHIRNLLRKLDVRSRVAA 188 >gi|297155312|gb|ADI05024.1| response regulator [Streptomyces bingchenggensis BCW-1] Length = 164 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L+L +G + EIA KL S TV + T +L NR A+A A+R G Sbjct: 102 GLTPRETDVLRLVAEGMGTGEIAVKLAYSERTVKNVIQGLTTRLGLRNRAHAVAYALREG 161 Query: 233 YI 234 YI Sbjct: 162 YI 163 >gi|227511558|ref|ZP_03941607.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227085203|gb|EEI20515.1| response regulator [Lactobacillus buchneri ATCC 11577] Length = 202 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL + +AA N L+++E L+ A DG T++EIAEKL LS TV YL + KL N Sbjct: 128 ELVRNMVNAADNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHN 187 Query: 221 RIQAIAKA 228 R++A+ A Sbjct: 188 RLEAVNMA 195 >gi|12620907|gb|AAG61133.1|AF330022_1 AHL receptor [Burkholderia vietnamiensis] Length = 239 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + +++ F+ L K +A LT RE L +G T+ EI + L +S TVN ++ + Sbjct: 157 HSLMSRFM-LPKLSPAAGVTLTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNIL 215 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL A N++QA+ KAI G I Sbjct: 216 EKLGATNKVQAVVKAISAGLI 236 >gi|327479056|gb|AEA82366.1| DNA-binding response regulator CorR [Pseudomonas stutzeri DSM 4166] Length = 194 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 4/98 (4%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFL----ELFKKRSSAARNLTERETSCLQLAG 186 Y T E L+ V+++ +V+T+ L ++ + + +LT RE L LAG Sbjct: 81 YSHATREHLLEGIRVLLKGGDWLPRVLTERLLGQWRRMRQLAESKTSLTLREREILSLAG 140 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G ++ EIAE+L LS HT+ +++ + K+ A NR +A Sbjct: 141 KGLSNAEIAEQLCLSPHTIKSHIHNLLRKIGASNRAEA 178 >gi|323489235|ref|ZP_08094467.1| NarL family DNA-binding response regulator [Planococcus donghaensis MPA1U2] gi|323397122|gb|EGA89936.1| NarL family DNA-binding response regulator [Planococcus donghaensis MPA1U2] Length = 211 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 56/109 (51%), Gaps = 3/109 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLAG 186 Y++ TS+ +A+ + +G +V+T ++ + +LTERE L L Sbjct: 100 SYILKTSKASRIADSIRETMNGTPVLEPEVMTKMMKQMRHERVLHDDLTEREMEILLLLA 159 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G T++E+A++L ++V TV ++ + KL+ +R QA+ A + I Sbjct: 160 RGLTNQEVADQLFIAVKTVKTHVSNILAKLEVHDRTQAVIYAFQHKLIT 208 >gi|306824387|ref|ZP_07457755.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|309800788|ref|ZP_07694922.1| transcriptional regulator, LuxR family [Bifidobacterium dentium JCVIHMP022] gi|304552339|gb|EFM40258.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|308222572|gb|EFO78850.1| transcriptional regulator, LuxR family [Bifidobacterium dentium JCVIHMP022] Length = 223 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 38/67 (56%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F + ++ + L+ RE ++L G TS IAE+ GL+V +VN YL A KL A Sbjct: 147 FARILREPKTGIARLSGREIEIIELCRQGDTSTLIAERTGLTVASVNTYLQRACEKLGAR 206 Query: 220 NRIQAIA 226 NR+Q ++ Sbjct: 207 NRVQLVS 213 >gi|313109354|ref|ZP_07795317.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310881819|gb|EFQ40413.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 875 Score = 46.6 bits (109), Expect = 0.003, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 39/66 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA L+ RE + L+L G +++EI+E+L +S+HTV ++ KL R QA+A+A Sbjct: 809 SAGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLGVERRTQAVARA 868 Query: 229 IRFGYI 234 G + Sbjct: 869 KHMGLL 874 >gi|297157797|gb|ADI07509.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 220 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T+RE L L G G ++ EIA++L +SV T YL KLDA +R+Q + A G Sbjct: 154 GITDREREVLTLVGSGLSNAEIADRLCISVATAKTYLTRLLAKLDARDRVQLVILAYEAG 213 Query: 233 YIC 235 + Sbjct: 214 LVA 216 >gi|293412200|ref|ZP_06654923.1| predicted protein [Escherichia coli B354] gi|291468971|gb|EFF11462.1| predicted protein [Escherichia coli B354] Length = 210 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 196 IELIKTALRMG-VC 208 >gi|199597190|ref|ZP_03210622.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258508705|ref|YP_003171456.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|199591994|gb|EDZ00069.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257148632|emb|CAR87605.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|259650011|dbj|BAI42173.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 221 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 QV T + S LT RE LQL G +++EIA +L +++ TV ++ + Sbjct: 128 QVTTKMMNRMNHPQSQYDELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILA 187 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLD +R QA A++ G + Sbjct: 188 KLDVEDRTQAAIYALKHGLV 207 >gi|83716463|ref|YP_440275.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650288|gb|ABC34352.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 425 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE LQ AG G T+ EI++ LG+S TV +L +A K+ A NR QA+ A G Sbjct: 364 DLTARERESLQWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARG 423 Query: 233 YI 234 I Sbjct: 424 LI 425 >gi|254417726|ref|ZP_05031450.1| Sigma-70, region 4 family [Brevundimonas sp. BAL3] gi|196183903|gb|EDX78879.1| Sigma-70, region 4 family [Brevundimonas sp. BAL3] Length = 209 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 38/64 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA LTERE + L+ +G ++EIA +L +SV TV A + KLD +R +A+ A Sbjct: 142 SAGDRLTEREIAILKAISEGRANKEIARRLHVSVDTVKADMKRIFSKLDVTDRTRAVIVA 201 Query: 229 IRFG 232 I+ G Sbjct: 202 IQRG 205 >gi|71057001|emb|CAI51628.1| eR transcriptional regulator [Acidithiobacillus ferrooxidans] Length = 214 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 8/114 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI--IEA-HGACYQVITDFLELFKKRSSAARNLTERETS 180 L + G + T+E+ A ++ ++A H + +VI L+ A L+ RE Sbjct: 105 LTLARAGETVTTAEWQAKACHILWLVQAVHLSMIRVIAPKLQ-----PEIAVQLSCREVE 159 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G+G TS EIA L ++ TVN ++ A KL+AVN+ A+ +A G + Sbjct: 160 VLRWTGEGKTSGEIANILNITERTVNFHISKAMAKLNAVNKTAAVLQAAMLGLL 213 >gi|297566766|ref|YP_003685738.1| LuxR family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851215|gb|ADH64230.1| two component transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 192 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 41/68 (60%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ LT RE + L+L G +++E+A++LGLS TV +L KL A NR++A+ Sbjct: 125 RAPDLPELTPREKTVLRLLVQGLSTKEMAQELGLSPDTVKDHLERLYGKLSARNRVEALE 184 Query: 227 KAIRFGYI 234 +A G++ Sbjct: 185 RARGLGFL 192 >gi|269925647|ref|YP_003322270.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789307|gb|ACZ41448.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 217 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L L G+T+ EIA +L ++V TV +++ + KL A NR++A+++A G Sbjct: 156 LSERELEILSLMASGHTNSEIARELYVAVGTVKSHVNNIYRKLGAKNRVEALSRARELGL 215 Query: 234 I 234 I Sbjct: 216 I 216 >gi|300898079|ref|ZP_07116447.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|301027468|ref|ZP_07190805.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|331674332|ref|ZP_08375092.1| putative 2-component transcriptional regulator [Escherichia coli TA280] gi|300358217|gb|EFJ74087.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|300394976|gb|EFJ78514.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|323966643|gb|EGB62075.1| luxR family protein regulatory protein [Escherichia coli M863] gi|331068426|gb|EGI39821.1| putative 2-component transcriptional regulator [Escherichia coli TA280] Length = 221 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + Sbjct: 147 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 206 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 207 IELIKTALRMG-VC 219 >gi|302873825|ref|YP_003842458.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] gi|307689930|ref|ZP_07632376.1| two component transcriptional regulator, LuxR family protein [Clostridium cellulovorans 743B] gi|302576682|gb|ADL50694.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] Length = 220 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 5/75 (6%) Query: 165 KKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 KK S + N +TERE LQ G TS+EIA +G++ TV A+L + KL Sbjct: 142 KKESKESNNTFNAGITERELFVLQAVARGCTSKEIAVDMGIAERTVKAHLTNIYSKLKVE 201 Query: 220 NRIQAIAKAIRFGYI 234 +R QA+A AI G I Sbjct: 202 SRPQAVAVAIEQGII 216 >gi|297560931|ref|YP_003679905.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845379|gb|ADH67399.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 217 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + L G+G ++EEIA +L +S T ++ A VKL A +R Q + A R G Sbjct: 156 LTEREREVVGLVGEGLSNEEIAARLVVSPATARTHVSRAMVKLGARDRAQLVVFAFRAGL 215 Query: 234 I 234 + Sbjct: 216 V 216 >gi|225568587|ref|ZP_03777612.1| hypothetical protein CLOHYLEM_04664 [Clostridium hylemonae DSM 15053] gi|225162603|gb|EEG75222.1| hypothetical protein CLOHYLEM_04664 [Clostridium hylemonae DSM 15053] Length = 206 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 45/72 (62%), Gaps = 3/72 (4%) Query: 155 QVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++I+ +L +K+S A+ ++ E+E + + L DG++++EIAEK+ LS TV YL + Sbjct: 126 EIISKIPDLLQKKSGFDYASCDIGEKEYTLITLVADGFSNKEIAEKMFLSEGTVRNYLSN 185 Query: 212 ATVKLDAVNRIQ 223 KLD +R Q Sbjct: 186 ILDKLDLRDRTQ 197 >gi|254505671|ref|ZP_05117817.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16] gi|219551324|gb|EED28303.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus 16] Length = 222 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 5/79 (6%) Query: 155 QVITDFLELFK-----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +V D++E F+ S A NLT+RE ++L G G ++ +IA++L +S +TV +L Sbjct: 134 KVAQDYIEYFRCANTVTTSQAYANLTKREKEIMRLLGHGASNLQIADELFVSENTVKTHL 193 Query: 210 GSATVKLDAVNRIQAIAKA 228 + K++A NR+QA+ A Sbjct: 194 HNIFKKINAKNRLQALLWA 212 >gi|332981237|ref|YP_004462678.1| LuxR family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698915|gb|AEE95856.1| two component transcriptional regulator, LuxR family [Mahella australiensis 50-1 BON] Length = 217 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L L G ++ EIA+KL +S TV +L S KL+ +R QA AI+ G Sbjct: 156 DLTQREREVLALVAKGLSNGEIAKKLFISEKTVKNHLSSIFRKLNVSDRTQAAVYAIKHG 215 Query: 233 Y 233 Y Sbjct: 216 Y 216 >gi|297158982|gb|ADI08694.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 235 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L+L +G ++ EIA +L +S TV ++ KL A +R QA+ A FG Sbjct: 157 LTPRETEVLRLIAEGLSNAEIAARLTVSAETVKTHVSRVLAKLGARDRAQAVMLAYEFGL 216 Query: 234 IC 235 + Sbjct: 217 VV 218 >gi|227523758|ref|ZP_03953807.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227089073|gb|EEI24385.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 209 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL + +AA N L+++E L+ A DG T++EIAEKL LS TV YL + KL N Sbjct: 136 ELVRNMVNAADNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHN 195 Query: 221 RIQAIAKA 228 R++A+ A Sbjct: 196 RLEAVNMA 203 >gi|218437173|ref|YP_002375502.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218169901|gb|ACK68634.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 234 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE LQL DGY++ IA++L ++V TV ++ + KL A +R QA +A+R G Sbjct: 173 LTDRELEVLQLIVDGYSNAAIADQLFITVGTVKTHVRNILNKLCADDRTQAAVRALRAGL 232 Query: 234 I 234 + Sbjct: 233 V 233 >gi|157157590|ref|YP_001464190.1| LuxR family transcriptional regulator [Escherichia coli E24377A] gi|209920305|ref|YP_002294389.1| hypothetical protein ECSE_3114 [Escherichia coli SE11] gi|300815723|ref|ZP_07095947.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300820647|ref|ZP_07100798.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300906614|ref|ZP_07124305.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|301302994|ref|ZP_07209121.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|309793907|ref|ZP_07688332.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|331678834|ref|ZP_08379508.1| putative 2-component transcriptional regulator [Escherichia coli H591] gi|157079620|gb|ABV19328.1| transcriptional regulator, LuxR family [Escherichia coli E24377A] gi|209913564|dbj|BAG78638.1| conserved hypothetical protein [Escherichia coli SE11] gi|300401653|gb|EFJ85191.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|300526911|gb|EFK47980.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300531652|gb|EFK52714.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300841658|gb|EFK69418.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|308122314|gb|EFO59576.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|315256718|gb|EFU36686.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1] gi|323160002|gb|EFZ45966.1| transcriptional regulator, LuxR family protein [Escherichia coli E128010] gi|323162555|gb|EFZ48405.1| transcriptional regulator, LuxR family protein [Escherichia coli E128010] gi|323163404|gb|EFZ49231.1| transcriptional regulator, LuxR family protein [Escherichia coli E128010] gi|324021194|gb|EGB90413.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3] gi|331073664|gb|EGI44985.1| putative 2-component transcriptional regulator [Escherichia coli H591] Length = 148 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + Sbjct: 74 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 133 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 134 IELIKTALRMG-VC 146 >gi|331696674|ref|YP_004332913.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951363|gb|AEA25060.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 224 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 37/65 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A R LT+RE+ L+ G ++ EIA +L L V TV ++G+ KL +R QA+ A Sbjct: 153 AGRGLTDRESEVLRGMARGLSNAEIAAELVLGVETVKTHVGNVLAKLGVRDRTQAVVAAF 212 Query: 230 RFGYI 234 G++ Sbjct: 213 ESGFV 217 >gi|254478643|ref|ZP_05092015.1| transcriptional regulator, LuxR family protein [Carboxydibrachium pacificum DSM 12653] gi|214035419|gb|EEB76121.1| transcriptional regulator, LuxR family protein [Carboxydibrachium pacificum DSM 12653] Length = 204 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 61/120 (50%), Gaps = 3/120 (2%) Query: 118 IAFPVRLGFHK-NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNL 174 IA P+ +G + GYV ++ + +EV++ ++ T++ ++ K++ + L Sbjct: 82 IASPIIVGNGEIAGYVDISTIDKKIVDEVLMVIKLLAEKIATEYEKIVKEKELNKIKIKL 141 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +T L L GY +IAE LG+ V TV + KL N +A+AKAI+ G I Sbjct: 142 NDSQTKILALEAKGYRESDIAEALGIGVVTVKYHKRKIVEKLGVKNIKEAVAKAIKLGLI 201 >gi|196231497|ref|ZP_03130355.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196224350|gb|EDY18862.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 216 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 40/76 (52%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ F R LT RET L+ G T +EIA +L LS HTV+ +L + Sbjct: 137 RVLDMFARFAPTRGDGDYGLTTRETQILEAMVKGRTKKEIAAQLDLSFHTVDTHLRNIYQ 196 Query: 215 KLDAVNRIQAIAKAIR 230 KL+ R A+AKA++ Sbjct: 197 KLEVNTRTGAVAKALK 212 >gi|308177198|ref|YP_003916604.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307744661|emb|CBT75633.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 230 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 38/67 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A +LT RE L G ++ EIAEKL LS TV ++G KL+A +R+QA+ A Sbjct: 163 AAVESLTPREREVFGLIAVGLSNPEIAEKLFLSEATVKTHVGHILAKLEARDRVQAVVIA 222 Query: 229 IRFGYIC 235 + G + Sbjct: 223 YQTGVVT 229 >gi|300783016|ref|YP_003763307.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792530|gb|ADJ42905.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 219 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G ++ EIAE+L +S TV ++ KLD +R+QA+ A R G Sbjct: 158 LTPRELEVLRLLAEGLSNSEIAERLVISQETVKTFVSRILTKLDLRDRVQAVVYAYRHG 216 >gi|227508573|ref|ZP_03938622.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191905|gb|EEI71972.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 209 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL + +AA N L+++E L+ A DG T++EIAEKL LS TV YL + KL N Sbjct: 136 ELVRNMVNAADNPLSDQEMVVLKSAADGDTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHN 195 Query: 221 RIQAIAKA 228 R++A+ A Sbjct: 196 RLEAVNMA 203 >gi|119489708|ref|ZP_01622467.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119454445|gb|EAW35594.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 100 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 43/73 (58%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + +S +L++RE + L G T++EIAE+L +S TV+ ++ + K + NR+ Sbjct: 1 MTQSKSHTPVSLSDRELQVVDLIATGLTNQEIAEQLEISKRTVDNHISNILTKTETENRV 60 Query: 223 QAIAKAIRFGYIC 235 ++ A++ G +C Sbjct: 61 ALVSWALKSGKVC 73 >gi|297198721|ref|ZP_06916118.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197715398|gb|EDY59432.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 213 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 151 SLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210 >gi|157162307|ref|YP_001459625.1| LuxR family transcriptional regulator [Escherichia coli HS] gi|170018901|ref|YP_001723855.1| two component LuxR family transcriptional regulator [Escherichia coli ATCC 8739] gi|157067987|gb|ABV07242.1| transcriptional regulator, LuxR family [Escherichia coli HS] gi|169753829|gb|ACA76528.1| two component transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|323941628|gb|EGB37808.1| luxR family protein regulatory protein [Escherichia coli E482] gi|332344746|gb|AEE58080.1| response regulator protein [Escherichia coli UMNK88] Length = 210 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 196 IELIKTALRMG-VC 208 >gi|332280465|ref|ZP_08392878.1| transcriptional regulator [Shigella sp. D9] gi|332102817|gb|EGJ06163.1| transcriptional regulator [Shigella sp. D9] Length = 158 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + Sbjct: 84 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 143 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 144 IELIKTALRMG-VC 156 >gi|15803376|ref|NP_289409.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 EDL933] gi|261226155|ref|ZP_05940436.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261256590|ref|ZP_05949123.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|300950599|ref|ZP_07164501.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|300958180|ref|ZP_07170334.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|301026137|ref|ZP_07189611.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|301643812|ref|ZP_07243849.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|331643538|ref|ZP_08344669.1| DNA-binding response regulator, LuxR family [Escherichia coli H736] gi|12517351|gb|AAG57968.1|AE005514_5 putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. EDL933] gi|887806|gb|AAA83037.1| ORF_f148 [Escherichia coli] gi|299879832|gb|EFI88043.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|300315132|gb|EFJ64916.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|300450079|gb|EFK13699.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|301077845|gb|EFK92651.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|315137458|dbj|BAJ44617.1| putative 2-component transcriptional regulator [Escherichia coli DH1] gi|323935789|gb|EGB32092.1| luxR family protein Bacterial regulatory protein [Escherichia coli E1520] gi|331037009|gb|EGI09233.1| DNA-binding response regulator, LuxR family [Escherichia coli H736] Length = 148 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + Sbjct: 74 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 133 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 134 IELIKTALRMG-VC 146 >gi|323499247|ref|ZP_08104224.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323315635|gb|EGA68669.1| LuxR family transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 222 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 5/79 (6%) Query: 155 QVITDFLELFK-----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +V D++E F+ S A NLT+RE ++L G G ++ +IA++L +S +TV +L Sbjct: 134 KVAQDYIEYFRCANTVTTSQAYANLTKREKEIMRLLGHGASNLQIADELFVSENTVKTHL 193 Query: 210 GSATVKLDAVNRIQAIAKA 228 + K++A NR+QA+ A Sbjct: 194 HNIFKKINAKNRLQALLWA 212 >gi|302337759|ref|YP_003802965.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Spirochaeta smaragdinae DSM 11293] gi|301634944|gb|ADK80371.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 886 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 45/79 (56%), Gaps = 5/79 (6%) Query: 155 QVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + I L L +K++S A + L+ RE L+L GYT++EIAE+L +SV TV + Sbjct: 801 EYIGKILTLIEKKASDAGSCKPVTLSNRELMVLRLLARGYTNKEIAEELFISVRTVKWHT 860 Query: 210 GSATVKLDAVNRIQAIAKA 228 + KL NR +A+ KA Sbjct: 861 VNIYKKLGVKNRTEAVVKA 879 >gi|300786704|ref|YP_003766995.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299796218|gb|ADJ46593.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 208 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++RET L+L DG+ ++EIA++L S TV + L T + NR A+A A+R G Sbjct: 148 MSQRETRVLRLVADGFETKEIADQLSYSERTVKSILHDITNRFQLRNRAHAVAFAMREGL 207 Query: 234 I 234 I Sbjct: 208 I 208 >gi|89096863|ref|ZP_01169754.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89088243|gb|EAR67353.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 201 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 6/107 (5%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLTERETSCLQLAGD 187 GY++ + LA E + H + + L +++++S LT RET L+ A Sbjct: 99 GGYLLKDTPSRDLA-EAVRRVHAGNRMISPELSLAMWEEKSP----LTPRETEILESAAA 153 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+T +IA +L LS TV Y+ KL A NRI+A+ +A G+I Sbjct: 154 GHTMAQIASQLYLSHGTVRNYMSEIIGKLGAANRIEAVNQAKAKGWI 200 >gi|1730567|sp|P54303|PHZR_PSECL RecName: Full=Transcriptional activator protein phzR gi|496217|gb|AAA21841.1| positive regulatory protein [Pseudomonas chlororaphis subsp. aureofaciens] Length = 241 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 15/151 (9%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEG--GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 P +W + + Q S +G G+L A P+ L EF L Sbjct: 104 PDLWSEANDSNLRHGLAQPSFNTQGRVGVLSLARKDNPISL-----------QEFEAL-- 150 Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 +V+ +A A LE + + + RE L+ DG TSEEI +G+ Sbjct: 151 KVVTKAFAAAVHEKISELESDVRVFNTDVEFSGRECDVLRWTADGKTSEEIGVIMGVCTD 210 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TVN + + K+ A NR+QA A+ GYI Sbjct: 211 TVNYHHRNIQRKIGASNRVQASRYAVAMGYI 241 >gi|307310532|ref|ZP_07590180.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|306909427|gb|EFN39922.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|323183401|gb|EFZ68798.1| transcriptional regulator, LuxR family protein [Escherichia coli 1357] Length = 147 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + Sbjct: 73 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 132 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 133 IELIKTALRMG-VC 145 >gi|260777127|ref|ZP_05886021.1| transcriptional regulator VpsT [Vibrio coralliilyticus ATCC BAA-450] gi|260606793|gb|EEX33067.1| transcriptional regulator VpsT [Vibrio coralliilyticus ATCC BAA-450] Length = 206 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 5/79 (6%) Query: 155 QVITDFLELFK-----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +V D++E F+ S A NLT+RE ++L G G ++ +IA++L +S +TV +L Sbjct: 118 KVAQDYIEHFRCANSVTTSQAYANLTKREKEIMRLLGHGASNLQIADELFVSENTVKTHL 177 Query: 210 GSATVKLDAVNRIQAIAKA 228 + K++A NR+QA+ A Sbjct: 178 HNIFKKINAKNRLQALLWA 196 >gi|171315760|ref|ZP_02904992.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia ambifaria MEX-5] gi|171099059|gb|EDT43839.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia ambifaria MEX-5] Length = 891 Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E LQL +GY++ IAEKL +S TV +L + K+ A +R QA+A + R G Sbjct: 830 LTPKEIRVLQLLAEGYSNSAIAEKLFVSDSTVRTHLRNINNKVGAHSRTQAVAISRRLGV 889 Query: 234 I 234 I Sbjct: 890 I 890 >gi|77457134|ref|YP_346639.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens Pf0-1] gi|77381137|gb|ABA72650.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 850 Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 41/72 (56%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I + E ++S+ L++RE LQL G ++ +IAEKL +S+HTV ++ KL Sbjct: 773 IDEAAEQVDEQSTTINPLSQRELKVLQLIAFGDSNLQIAEKLFISLHTVKTHVRRIHSKL 832 Query: 217 DAVNRIQAIAKA 228 R QA+AKA Sbjct: 833 GVERRTQAVAKA 844 >gi|300936213|ref|ZP_07151149.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] gi|300458670|gb|EFK22163.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] Length = 221 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + Sbjct: 147 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 206 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 207 IELIKTALRMG-VC 219 >gi|218706350|ref|YP_002413869.1| hypothetical protein ECUMN_3185 [Escherichia coli UMN026] gi|293406343|ref|ZP_06650269.1| predicted protein [Escherichia coli FVEC1412] gi|298382079|ref|ZP_06991676.1| response regulatory protein ygeK [Escherichia coli FVEC1302] gi|331664414|ref|ZP_08365320.1| putative 2-component transcriptional regulator [Escherichia coli TA143] gi|218433447|emb|CAR14349.1| conserved hypothetical protein, putative Bacterial regulatory protein LuxR family [Escherichia coli UMN026] gi|284922792|emb|CBG35880.1| putative two-component response regulator [Escherichia coli 042] gi|291426349|gb|EFE99381.1| predicted protein [Escherichia coli FVEC1412] gi|298277219|gb|EFI18735.1| response regulatory protein ygeK [Escherichia coli FVEC1302] gi|323978530|gb|EGB73612.1| luxR family protein regulatory protein [Escherichia coli TW10509] gi|331058345|gb|EGI30326.1| putative 2-component transcriptional regulator [Escherichia coli TA143] Length = 210 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 196 IELIKTALRMG-VC 208 >gi|254418089|ref|ZP_05031813.1| HTH DNA binding domain family [Brevundimonas sp. BAL3] gi|196184266|gb|EDX79242.1| HTH DNA binding domain family [Brevundimonas sp. BAL3] Length = 147 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE C+QLAG +++EIA+ LG++ TV YL SA KL +R +A A+A+ Y Sbjct: 4 LTRREIECVQLAGLRLSNQEIADVLGITPSTVANYLQSANAKLGTSHR-RAAAQALGIQY 62 >gi|237799774|ref|ZP_04588235.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022629|gb|EGI02686.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 534 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 20/130 (15%) Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA-----NEVIIEAHGACYQVITDFLELF 164 G LLPF + LG H + E L+ A ++E AC F+ L Sbjct: 419 GALLPFRTL-----LGEHAQ----WLHEQLLQAPHCKVRNALLEKFPAC------FIPLT 463 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + + L+ RE LQL G +++EI+E+L +S+HTV + KL R QA Sbjct: 464 PEPAHGSDCLSVRELGVLQLIAKGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQA 523 Query: 225 IAKAIRFGYI 234 +A+A G + Sbjct: 524 VARAKILGLL 533 >gi|300788715|ref|YP_003769006.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299798229|gb|ADJ48604.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L++ GY + E+A +L LS TV YL + KL+A NR+ AI A G+ Sbjct: 141 LTARELDVLRMVAQGYGTVEVAARLYLSAGTVRNYLTTVVAKLNARNRVDAIRIAEESGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|302544547|ref|ZP_07296889.1| putative two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462165|gb|EFL25258.1| putative two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 222 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G+G + +IAE++GL+ TV ++ + KL +NR+QA A R G Sbjct: 152 LTPREREVLALLGEGLANPQIAERMGLAPSTVKDHVRAVLGKLGGLNRVQAAIVADRAGL 211 Query: 234 IC 235 I Sbjct: 212 IT 213 >gi|218663535|ref|ZP_03519465.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli IE4771] Length = 240 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T E CL+L G S EIA+ L LS + VN ++GS KL R QA+ A+R Sbjct: 178 FTSSELDCLRLTAGGRKSSEIAKLLHLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNI 237 Query: 234 I 234 I Sbjct: 238 I 238 >gi|158318427|ref|YP_001510935.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113832|gb|ABW16029.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 398 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G G+T+ EIAE+L LS TV ++G K+ A +R+QA+ A G Sbjct: 319 TLTEREREILVAIGHGWTNGEIAERLVLSESTVKTHVGRMLAKIGARDRVQAVICAYDLG 378 >gi|317122209|ref|YP_004102212.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592189|gb|ADU51485.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 280 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G T++EIA++L +S+ TV A+ + KLD + ++ AIR G Sbjct: 215 GLTERETEVLTLIAQGLTNQEIADRLFISIKTVQAHRSNIMEKLDLHDAVELTKYAIRHG 274 Query: 233 YIC 235 I Sbjct: 275 LIS 277 >gi|294628631|ref|ZP_06707191.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292831964|gb|EFF90313.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 213 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 151 SLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210 >gi|293416096|ref|ZP_06658736.1| response regulatory protein ygeK [Escherichia coli B185] gi|331654339|ref|ZP_08355339.1| putative 2-component transcriptional regulator [Escherichia coli M718] gi|291432285|gb|EFF05267.1| response regulatory protein ygeK [Escherichia coli B185] gi|331047721|gb|EGI19798.1| putative 2-component transcriptional regulator [Escherichia coli M718] Length = 210 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 196 IELIKTALRMG-VC 208 >gi|313679613|ref|YP_004057352.1| two component LuxR family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313152328|gb|ADR36179.1| two component transcriptional regulator, LuxR family [Oceanithermus profundus DSM 14977] Length = 219 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/93 (39%), Positives = 50/93 (53%), Gaps = 8/93 (8%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLG 199 EV+++A A Q+I DF KR + +LT+RE L+L G T++EIA++LG Sbjct: 125 EVLLDAELA-EQIIHDF---RAKRDVLPQAHHADLTDREVQILRLLAQGATNQEIADELG 180 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +S TV L KL NR QA AIR G Sbjct: 181 ISEKTVRNRLSEIFSKLHLNNRTQAALYAIREG 213 >gi|291441190|ref|ZP_06580580.1| predicted protein [Streptomyces ghanaensis ATCC 14672] gi|291344085|gb|EFE71041.1| predicted protein [Streptomyces ghanaensis ATCC 14672] Length = 133 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT R+ S L L +GY + +IA LG S HTV + +L A NR A+A A+R G Sbjct: 73 LTARQASVLSLMAEGYGNADIALLLGCSEHTVKNVIYEIMARLQARNRAHAVAHAVRHGL 132 Query: 234 I 234 + Sbjct: 133 V 133 >gi|227822236|ref|YP_002826207.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii NGR234] gi|227341236|gb|ACP25454.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii NGR234] Length = 244 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L + G + EIA LG+S TV ++ +A KL+ V+ QA+A+A+R Sbjct: 180 RLTSRETEVLTWSAAGKSYWEIATILGISERTVRFFMSNARRKLNVVSNTQAVAQAVRHA 239 Query: 233 YI 234 I Sbjct: 240 LI 241 >gi|20141967|sp|Q46791|YGEK_ECOLI RecName: Full=Putative uncharacterized response regulatory protein ygeK Length = 210 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 196 IELIKTALRMG-VC 208 >gi|29833019|ref|NP_827653.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29610140|dbj|BAC74188.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 213 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 151 SLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210 >gi|328881486|emb|CCA54725.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 214 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 152 TLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 211 >gi|258652795|ref|YP_003201951.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556020|gb|ACV78962.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 144 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +RE L+L DG ++ +IA +L LS TV YL AT KL A NRI A +A G+ Sbjct: 84 LADREREVLRLTEDGLSNADIARRLHLSEGTVRNYLSEATHKLGAGNRIAAARQARERGW 143 Query: 234 I 234 + Sbjct: 144 L 144 >gi|219849240|ref|YP_002463673.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543499|gb|ACL25237.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 247 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 7/99 (7%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIA 195 N+V++E ++++ F L + ++ A L+ERE L+ G +++EIA Sbjct: 136 NDVLMEEPRIAGRILSQFRNLPEVQTLADDLGIQIFTPLSEREIEVLERIAAGSSNKEIA 195 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + LG+S TV ++ S KL +R QA+ A+R G+I Sbjct: 196 DALGISTQTVKNHISSILRKLSLNDRTQAVIFALRRGWI 234 >gi|33864279|ref|NP_895839.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9313] gi|33641059|emb|CAE22188.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9313] Length = 92 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L DG T++EIAEKL +S TV+ ++ + K + NR+ + A+ G Sbjct: 14 LSSREMEIIDLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHGK 73 Query: 234 IC 235 IC Sbjct: 74 IC 75 >gi|228991572|ref|ZP_04151516.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228768141|gb|EEM16760.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 201 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L++A +G T+ EI + L L+ TV YL S+ KL+A +R QAI A G+ Sbjct: 141 LTAREMEILRMAKNGMTTREIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIADEKGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|205374169|ref|ZP_03226968.1| hypothetical protein Bcoam_13554 [Bacillus coahuilensis m4-4] Length = 199 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 38/72 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTERE L L DG + EIA +L + TV Y+ + KL+ NR Sbjct: 126 ELIEDVYTEQNPLTEREIEVLGLVADGKNTNEIANELSIKAGTVRNYISAILDKLEVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITQSKEKGW 197 >gi|89109637|ref|AP_003417.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|170082422|ref|YP_001731742.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|256024645|ref|ZP_05438510.1| DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B] gi|307139537|ref|ZP_07498893.1| DNA-binding transcriptional regulator [Escherichia coli H736] gi|85675670|dbj|BAE76923.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|169890257|gb|ACB03964.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|326339074|gb|EGD62889.1| Hypothetical response regulatory protein ygeK [Escherichia coli O157:H7 str. 1044] gi|326343044|gb|EGD66812.1| Hypothetical response regulatory protein ygeK [Escherichia coli O157:H7 str. 1125] Length = 147 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + Sbjct: 73 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 132 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 133 IELIKTALRMG-VC 145 >gi|37523666|ref|NP_927043.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214671|dbj|BAC92038.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 225 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 155 QVITDFLELFKK------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +V T F LF +S + +LTERE L G +++EIA L +++ TV A+ Sbjct: 138 EVATQFFRLFHYYAGHTVQSRSRIHLTEREQEVLHWLVRGASNDEIARNLYITIATVKAH 197 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L + KL +R QAI A++ G + Sbjct: 198 LSAIFEKLQVTSRTQAIVAALKLGLV 223 >gi|307327703|ref|ZP_07606887.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886601|gb|EFN17603.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 233 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G+G + +IAE++GL+ TV ++ + KL +NR+QA A R G Sbjct: 163 LTPREREVLALLGEGLANPQIAERMGLAPSTVKDHVRAVLGKLGGLNRVQAAIVADRAGL 222 Query: 234 IC 235 + Sbjct: 223 VT 224 >gi|239932840|ref|ZP_04689793.1| LuxR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 144 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT R+ S L L +GY + +IA LG S HTV + +L A NR A+A A+R G Sbjct: 84 LTARQASVLSLMAEGYGNADIALLLGCSEHTVKNVIYEIMARLQARNRAHAVAHAVRHGL 143 Query: 234 I 234 + Sbjct: 144 V 144 >gi|15832966|ref|NP_311739.1| hypothetical protein ECs3712 [Escherichia coli O157:H7 str. Sakai] gi|168747683|ref|ZP_02772705.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4113] gi|168753777|ref|ZP_02778784.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4401] gi|168759967|ref|ZP_02784974.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4501] gi|168766832|ref|ZP_02791839.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4486] gi|168775716|ref|ZP_02800723.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4196] gi|168778853|ref|ZP_02803860.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4076] gi|168799972|ref|ZP_02824979.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC508] gi|195936460|ref|ZP_03081842.1| hypothetical protein EscherichcoliO157_08342 [Escherichia coli O157:H7 str. EC4024] gi|208808850|ref|ZP_03251187.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4206] gi|208813228|ref|ZP_03254557.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4045] gi|208818554|ref|ZP_03258874.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4042] gi|209398226|ref|YP_002272320.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4115] gi|217327388|ref|ZP_03443471.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. TW14588] gi|254794795|ref|YP_003079632.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|20140955|sp|P58664|YGEK_ECO57 RecName: Full=Uncharacterized response regulatory protein ygeK gi|13363184|dbj|BAB37135.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187768739|gb|EDU32583.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4196] gi|188017817|gb|EDU55939.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4113] gi|189003396|gb|EDU72382.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4076] gi|189358682|gb|EDU77101.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4401] gi|189363784|gb|EDU82203.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4486] gi|189369373|gb|EDU87789.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4501] gi|189377667|gb|EDU96083.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC508] gi|208728651|gb|EDZ78252.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4206] gi|208734505|gb|EDZ83192.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4045] gi|208738677|gb|EDZ86359.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4042] gi|209159626|gb|ACI37059.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4115] gi|209747612|gb|ACI72113.1| hypothetical protein ECs3712 [Escherichia coli] gi|209747614|gb|ACI72114.1| hypothetical protein ECs3712 [Escherichia coli] gi|209747616|gb|ACI72115.1| hypothetical protein ECs3712 [Escherichia coli] gi|217319755|gb|EEC28180.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. TW14588] gi|254594195|gb|ACT73556.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|320189186|gb|EFW63845.1| Hypothetical response regulatory protein ygeK [Escherichia coli O157:H7 str. EC1212] Length = 210 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + Sbjct: 136 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 195 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 196 IELIKTALRMG-VC 208 >gi|312972929|ref|ZP_07787102.1| bacterial regulatory s, luxR family protein [Escherichia coli 1827-70] gi|310332871|gb|EFQ00085.1| bacterial regulatory s, luxR family protein [Escherichia coli 1827-70] Length = 123 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT RE+ LQL DG T++EIA L LS TV + + KLD + Sbjct: 49 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 108 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 109 IELIKTALRMG-VC 121 >gi|288916995|ref|ZP_06411366.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288351535|gb|EFC85741.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 274 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 36/60 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G +++ IA++LG+ V+TV +L S VKL R++A+ A R G Sbjct: 212 HLTRREHDVLALLSAGLSNQAIADRLGIGVYTVKGHLKSLYVKLHVEGRLEAVTAARRLG 271 >gi|226359681|ref|YP_002777459.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226238166|dbj|BAH48514.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 219 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQL G ++ EIA +L LS T+ +++G KL+ +R+QA+ A G Sbjct: 155 LTEREREVLQLVATGLSNTEIAAQLFLSESTIKSHVGRILTKLNVRDRVQAVVLAYETGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|291442180|ref|ZP_06581570.1| response regulator [Streptomyces ghanaensis ATCC 14672] gi|291345075|gb|EFE72031.1| response regulator [Streptomyces ghanaensis ATCC 14672] Length = 230 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 38/67 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A+ LT RE ++L +G+ + +IA KL S T+ + T +L+ NR A+A Sbjct: 164 SYPAQRLTPREVDVMRLVAEGFGTVDIAAKLCYSERTIKDIIHKLTTRLNLRNRAHAVAY 223 Query: 228 AIRFGYI 234 A+R GYI Sbjct: 224 ALREGYI 230 >gi|309789968|ref|ZP_07684544.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308227988|gb|EFO81640.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 253 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 7/99 (7%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIA 195 N+V++E +V++ F L + ++ L+ERE L+ G +++EIA Sbjct: 135 NDVVLEEPQVAKRVLSQFRNLPEATATDPAADFPIFTPLSEREIEVLERIAAGGSNKEIA 194 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L +S TV ++ S KL +R QA+ A+R G+I Sbjct: 195 DSLSISTQTVKNHISSILRKLSLNDRTQAVLFALRRGWI 233 >gi|298250569|ref|ZP_06974373.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548573|gb|EFH82440.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE L+ G S+EIA +LG+S+ TV ++L S KL +R A+A I Sbjct: 157 AEELTERECEVLEAVARGERSKEIASRLGISLRTVGSHLTSIYSKLGVDSRASAVATGIE 216 Query: 231 FGYI 234 G + Sbjct: 217 RGLL 220 >gi|257792552|ref|YP_003183158.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|325832688|ref|ZP_08165451.1| prevent-host-death family protein [Eggerthella sp. HGA1] gi|257476449|gb|ACV56769.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|325485827|gb|EGC88288.1| prevent-host-death family protein [Eggerthella sp. HGA1] Length = 228 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT+RE L L G+T++EI +L +S TV +L KLDA +R Q + +A Sbjct: 161 RTLTDREREILALVARGFTNDEIGSELFISPATVKTHLARIMAKLDAHDRAQLVVRAYEG 220 Query: 232 GYI 234 G + Sbjct: 221 GLV 223 >gi|218682861|ref|ZP_03530462.1| transcriptional regulator protein [Rhizobium etli CIAT 894] Length = 230 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE CL+L +GY+++ IA L L +K A NR QAIAKA+ G Sbjct: 167 SLTPRELRCLELMAEGYSTQRIARALDLKHDETRDLEAGIILKFRANNRFQAIAKAVLLG 226 Query: 233 YI 234 + Sbjct: 227 IV 228 >gi|316933442|ref|YP_004108424.1| autoinducer-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601156|gb|ADU43691.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 239 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ +A+ LT RE L +G T EI++ LG+S H V+ K AVNR+Q Sbjct: 169 KRAINASPRLTIREADVLHWIAEGKTDWEISQILGVSEHLVDKVARQLKDKFGAVNRVQM 228 Query: 225 IAKAIRFGYI 234 I+ A+R G I Sbjct: 229 ISCAMRLGVI 238 >gi|320105355|ref|YP_004180945.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319923876|gb|ADV80951.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 217 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 40/65 (61%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +A +L+ RET L+ G ++ +IA+ L +S TV ++ S KLDA +R QA+ A+ Sbjct: 151 SANDLSPRETEVLRSVAQGRSNRQIADALLISEDTVKGHMKSIMAKLDAGDRTQAVIIAM 210 Query: 230 RFGYI 234 + G++ Sbjct: 211 KRGFL 215 >gi|302387016|ref|YP_003822838.1| two component transcriptional regulator, LuxR family [Clostridium saccharolyticum WM1] gi|302197644|gb|ADL05215.1| two component transcriptional regulator, LuxR family [Clostridium saccharolyticum WM1] Length = 213 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RET L L G T EIAE+L LSV + +L S KL+ N+I A+ KA Sbjct: 153 LTGRETQVLTLLAQGLTQREIAEELFLSVSCIKKHLASIYSKLNVNNKISAVQKA 207 >gi|1706361|sp|P54662|DEGU_BREBE RecName: Full=Transcriptional regulatory protein degU gi|710496|gb|AAC41439.1| transcriptional activator protein [Brevibacillus brevis] Length = 236 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DGY++ I E L +S TV ++ + K++ +R QA+ ++I+ G+ Sbjct: 173 LTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVESIKNGW 232 Query: 234 I 234 + Sbjct: 233 V 233 >gi|317488844|ref|ZP_07947374.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316911918|gb|EFV33497.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 228 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT+RE L L G+T++EI +L +S TV +L KLDA +R Q + +A Sbjct: 161 RTLTDREREILALVARGFTNDEIGSELFISPATVKTHLARIMAKLDAHDRAQLVVRAYEG 220 Query: 232 GYI 234 G + Sbjct: 221 GLV 223 >gi|261250785|ref|ZP_05943359.1| transcriptional regulator VpsT [Vibrio orientalis CIP 102891] gi|260937658|gb|EEX93646.1| transcriptional regulator VpsT [Vibrio orientalis CIP 102891] Length = 222 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 5/79 (6%) Query: 155 QVITDFLELFK-----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +V D++E F+ S A NLT+RE ++L G G ++ +IA++L +S +TV +L Sbjct: 134 KVAQDYIEHFRCANTVTTSQAYANLTKREKEIMRLLGHGASNVQIADELFVSENTVKTHL 193 Query: 210 GSATVKLDAVNRIQAIAKA 228 + K++A NR+QA+ A Sbjct: 194 HNIFKKINAKNRLQALLWA 212 >gi|253699116|ref|YP_003020305.1| LuxR family transcriptional regulator [Geobacter sp. M21] gi|251773966|gb|ACT16547.1| two component transcriptional regulator, LuxR family [Geobacter sp. M21] Length = 216 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 53/112 (47%), Gaps = 8/112 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKR-----SSAARNLTERETS 180 NGYV+ S F LA + A G Y +V T ++ + +R + NL+ RE Sbjct: 100 NGYVLKDSAFAELATAIRAVASGETYLPSRVTTLLIKEYLQRIPDEVPATYENLSLRERE 159 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG ++EIA G+SV TV S KLD + + A+R G Sbjct: 160 ILQLIADGKNAKEIAFSFGVSVKTVENQRHSIMKKLDLFSIAELTKYAVRQG 211 >gi|192359370|ref|YP_001983632.1| response regulator [Cellvibrio japonicus Ueda107] gi|190685535|gb|ACE83213.1| response regulator [Cellvibrio japonicus Ueda107] Length = 225 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 7/111 (6%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTERETSCLQ 183 GY++ ++ L L E I E + + + +R ++ LT RET L+ Sbjct: 114 GYLLKDADSLELV-EAIQELRAGRSPISSSIARILVRRMGGSTPATPTPELTPRETEILR 172 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+T E+AE LG+S HTV ++ + KL A NR +A+ +A + G I Sbjct: 173 GIAKGFTYTELAEWLGISRHTVPVHIKNIYRKLAANNRSEAVYEASKRGLI 223 >gi|302540939|ref|ZP_07293281.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458557|gb|EFL21650.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 214 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L G G+T+ EIAE+L L+ TV ++G K+ A +RIQA+ +R Sbjct: 156 TLSDREREVLVAIGQGWTNAEIAERLVLTESTVKKHVGRVLAKIGARDRIQAVIMGVR 213 >gi|302536696|ref|ZP_07289038.1| two-component system response regulator [Streptomyces sp. C] gi|302445591|gb|EFL17407.1| two-component system response regulator [Streptomyces sp. C] Length = 208 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 38/64 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L+ A G T+ E+A +LGLS TV YL +A KL A NR +A+ A Sbjct: 145 ANPLTDREREVLRAAEFGATNAELASRLGLSQGTVRNYLSTAIQKLAARNRAEAVRVARE 204 Query: 231 FGYI 234 G++ Sbjct: 205 KGWL 208 >gi|12620899|gb|AAG61129.1|AF330018_1 AHL receptor [Burkholderia cepacia ATCC 25416] gi|17939926|emb|CAD19536.1| CepR protein [Burkholderia cepacia] gi|288551614|gb|ADC53303.1| transcriptional activator [Burkholderia cepacia] Length = 239 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +A LT RE L +G T+ EI + L +S TVN ++ + KL A N++QA Sbjct: 167 KLSPAAGVTLTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQA 226 Query: 225 IAKAIRFGYI 234 + KAI G I Sbjct: 227 VVKAISAGLI 236 >gi|89893631|ref|YP_517118.1| hypothetical protein DSY0885 [Desulfitobacterium hafniense Y51] gi|89333079|dbj|BAE82674.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 227 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 40/87 (45%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +V + G + L +K LTERET L + GYTS+EI EKL ++ Sbjct: 132 GQVFLRPEGLAVLTVQQKLNKKQKHCGGEPVLTERETQVLGMVARGYTSKEIGEKLYIAP 191 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAI 229 TV+ Y KL+ R Q + AI Sbjct: 192 STVDTYRERLIKKLEFTTRAQLVDYAI 218 >gi|89068113|ref|ZP_01155530.1| autoinducer-binding transcriptional regulator LuxR [Oceanicola granulosus HTCC2516] gi|89046352|gb|EAR52409.1| autoinducer-binding transcriptional regulator LuxR [Oceanicola granulosus HTCC2516] Length = 228 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + +R+L+ RE L GY +A+ L +S HT+ AY+ SA KL A N A+A+A Sbjct: 143 APSRSLSPREIEALTYLAQGYGRGRVADVLSISEHTLRAYIESARFKLGAANTTHAVARA 202 Query: 229 IRFGYI 234 G I Sbjct: 203 AMEGLI 208 >gi|300788334|ref|YP_003768625.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797848|gb|ADJ48223.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 225 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G G+T+ EIAE+L LS TV ++G K+ A +RIQA+ A G Sbjct: 158 SLTAREQDILVAIGQGWTNGEIAERLVLSESTVKTHVGRVLAKIGARDRIQAVILAYDLG 217 >gi|170723583|ref|YP_001751271.1| ATP-dependent transcriptional regulator LuxR [Pseudomonas putida W619] gi|169761586|gb|ACA74902.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pseudomonas putida W619] Length = 905 Score = 46.2 bits (108), Expect = 0.004, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 43/80 (53%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ EL S +L+ RE + L+L G ++++I+E+L +S+HTV + Sbjct: 825 ELLARLPELAAPGSGTCESLSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHINS 884 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL R QA+A+A G + Sbjct: 885 KLGVERRTQAVARAKSLGLL 904 >gi|13472199|ref|NP_103766.1| response regulatory protein [Mesorhizobium loti MAFF303099] gi|14022944|dbj|BAB49552.1| respose regulatory protein [Mesorhizobium loti MAFF303099] Length = 211 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L +G ++ IA +L +SVHT ++ + +KL A NR AIA A+R G Sbjct: 149 LSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTDAIAIAMRQGL 208 Query: 234 I 234 + Sbjct: 209 V 209 >gi|153003783|ref|YP_001378108.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027356|gb|ABS25124.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 202 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 8/70 (11%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT----VNAYLGSATVKLDAVNRIQAI 225 AA LT RE L L +G ++ IA +LG+S HT VNA LG KL +R +AI Sbjct: 136 AAEGLTRREREVLALLAEGLANKAIAARLGISEHTAKFHVNAILG----KLGVESRAEAI 191 Query: 226 AKAIRFGYIC 235 +A R G + Sbjct: 192 VRAARLGLVA 201 >gi|134293938|ref|YP_001117674.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134137095|gb|ABO58209.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 239 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + +++ F+ L K +A LT RE L +G T+ EI + L +S TVN ++ + Sbjct: 157 HSLMSRFM-LPKLSPAAGVTLTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNIL 215 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL A N++QA+ KAI G I Sbjct: 216 EKLAATNKVQAVVKAIAAGLI 236 >gi|15807682|ref|NP_285334.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6460582|gb|AAF12288.1|AE001862_114 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 211 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+ A G ++ IA +LG+ V TV YL A KL A NR +A KA G+ Sbjct: 151 LTEREIQVLRAAETGRSTAAIAAELGIGVGTVRNYLSEAIGKLGAENRAEAARKARERGW 210 Query: 234 I 234 + Sbjct: 211 L 211 >gi|313902397|ref|ZP_07835800.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313467328|gb|EFR62839.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 218 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL +G ++ EI ++L +S TV ++ S KL +R QA+ AIR G+ Sbjct: 156 LTRREFEVLQLVAEGVSNREIGQRLFISEKTVKNHITSIFRKLGVADRTQAVIHAIREGW 215 Query: 234 I 234 + Sbjct: 216 V 216 >gi|307944862|ref|ZP_07660200.1| ATP-dependent transcription regulator LuxR [Roseibium sp. TrichSKD4] gi|307772076|gb|EFO31299.1| ATP-dependent transcription regulator LuxR [Roseibium sp. TrichSKD4] Length = 240 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 5/89 (5%) Query: 146 IIEAHGACYQVITDFLELFKKR-----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 +++ A + + +FL L K S+A LT RE CL+ G + E+A+KL + Sbjct: 147 VLQDREAEFHFLANFLHLRMKDVALHAHSSAPVLTRRELECLKWLSAGLRTAELADKLAI 206 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 S TV ++ +A KL A R QA+A+A+ Sbjct: 207 SGPTVEFHIKNAREKLSAKTREQAVARAV 235 >gi|170078560|ref|YP_001735199.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886229|gb|ACA99942.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 251 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE LQL DG ++ EIAE L ++V TV ++ + KL A +R QA +A+R G Sbjct: 190 LTDRELEVLQLIVDGCSNSEIAEHLFITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 249 Query: 234 I 234 + Sbjct: 250 V 250 >gi|15616190|ref|NP_244495.1| two-component response regulator involved in degradative enzyme [Bacillus halodurans C-125] gi|10176252|dbj|BAB07347.1| two-component response regulator involved in degradative enzyme [Bacillus halodurans C-125] Length = 236 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DGY++ I E L +S TV ++ + K++ +R QA+ ++I+ G+ Sbjct: 173 LTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVESIKNGW 232 Query: 234 I 234 + Sbjct: 233 V 233 >gi|332879917|ref|ZP_08447602.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682128|gb|EGJ55040.1| transcriptional regulator, LuxR family [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 218 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 39/69 (56%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +TD + F S+ LT RE LA +G S+EI+EKL +S+HTVN + + KL Sbjct: 148 LTDEIVPFAIESATDALLTPREREIFALAKEGMFSKEISEKLNISIHTVNRHRQNILEKL 207 Query: 217 DAVNRIQAI 225 N I+AI Sbjct: 208 QVDNIIEAI 216 >gi|170076532|ref|YP_001733171.1| response regulator receiver [Synechococcus sp. PCC 7002] gi|169887394|gb|ACB01102.1| Response regulator receiver, LuxR domain [Synechococcus sp. PCC 7002] Length = 231 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 62/121 (51%), Gaps = 15/121 (12%) Query: 127 HKNGYVI--FTSEFLMLANEVIIEAHGACY-------QVITDFLELFKK--RSSAARN-- 173 GY + +E L+LA + I A GA + Q+ F + + RS A++ Sbjct: 100 QAQGYCLKGVDAESLILAIQSI--AAGASWWDAQATQQIRAQFQQPMAEMPRSVPAQDNP 157 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L +G ++ EIAE L ++ TV ++ + KL+A +R QA+ A+R G Sbjct: 158 LTQREGEILALIANGKSNSEIAETLYIAASTVRVHVHAILQKLEARDRTQAVVIALRHGL 217 Query: 234 I 234 I Sbjct: 218 I 218 >gi|14586760|gb|AAK70352.1|AF333007_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia vietnamiensis] Length = 239 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +A LT RE L +G T+ EI + L +S TVN ++ + KL A N++QA Sbjct: 167 KLSPAAGVTLTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQA 226 Query: 225 IAKAIRFGYI 234 + KAI G I Sbjct: 227 VVKAISAGLI 236 >gi|164686850|ref|ZP_02210878.1| hypothetical protein CLOBAR_00446 [Clostridium bartlettii DSM 16795] gi|164604240|gb|EDQ97705.1| hypothetical protein CLOBAR_00446 [Clostridium bartlettii DSM 16795] Length = 826 Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 34/58 (58%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +FL+ KK S L+ERE LA G+T+ EIA+KL +SV+TV L + KL Sbjct: 751 EFLKFVKKEKSKVVELSERELEVANLAAQGFTNNEIAKKLFVSVNTVKTILKAVFKKL 808 >gi|163847185|ref|YP_001635229.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525026|ref|YP_002569497.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668474|gb|ABY34840.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448905|gb|ACM53171.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 246 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+ G +++EIA+ LG+S TV ++ S KL +R QA+ A+R G+ Sbjct: 172 LSEREIEVLERIAAGNSNKEIADALGISTQTVKNHISSILRKLSLNDRTQAVIFALRRGW 231 Query: 234 I 234 I Sbjct: 232 I 232 >gi|325520628|gb|EGC99691.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49] Length = 109 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 163 LFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + K S AR LT RE L +G T+ EI + L +S TVN ++ + KL A N+ Sbjct: 34 MVPKLSPEARVALTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNK 93 Query: 222 IQAIAKAIRFGYI 234 +QA+ KAI G I Sbjct: 94 VQAVVKAISAGLI 106 >gi|317122051|ref|YP_004102054.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592031|gb|ADU51327.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 218 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL +G ++ EI ++L +S TV ++ S KL +R QA+ AIR G+ Sbjct: 156 LTRREFEVLQLVAEGVSNREIGQRLFISEKTVKNHITSIFRKLGVADRTQAVIHAIREGW 215 Query: 234 I 234 + Sbjct: 216 V 216 >gi|107025997|ref|YP_623508.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692818|ref|YP_838351.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170737931|ref|YP_001779191.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105895371|gb|ABF78535.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116650818|gb|ABK11458.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] gi|169820119|gb|ACA94701.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 239 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +A LT RE L +G T+ EI + L +S TVN ++ + KL A N++QA Sbjct: 167 KLSPAAGVTLTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQA 226 Query: 225 IAKAIRFGYI 234 + KAI G I Sbjct: 227 VVKAISAGLI 236 >gi|149907939|ref|ZP_01896607.1| transcriptional regulator, LuxR family [Moritella sp. PE36] gi|149808945|gb|EDM68876.1| transcriptional regulator, LuxR family [Moritella sp. PE36] Length = 244 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 40/70 (57%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++S NL++RE L A +G ++ + + L +S TV + + KL+ VNR QAI Sbjct: 174 RKSLWKPNLSKRELEVLNWAKEGKSNWDTSLILAISERTVKFHFSNIFKKLEVVNRSQAI 233 Query: 226 AKAIRFGYIC 235 A+AI FG + Sbjct: 234 ARAIHFGLVS 243 >gi|317403552|gb|EFV84049.1| hypothetical protein HMPREF0005_03096 [Achromobacter xylosoxidans C54] Length = 238 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 53/107 (49%), Gaps = 2/107 (1%) Query: 130 GYVIFTSEFLMLANEV-IIEAHGACY-QVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY+ S LA V ++ A G CY Q L R LT+R+ LQL Sbjct: 132 GYLPKASSPDALAAAVSLVLAGGECYPQPTARPLATAHAPLQELRELTQRQEEILQLLVQ 191 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EI +++G+SV TV ++ + KL+A N+ +A A++ G + Sbjct: 192 GKTMREIGQQVGISVATVKSHARTLYWKLNARNQAEAAYIAVQMGLV 238 >gi|295690124|ref|YP_003593817.1| LuxR family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432027|gb|ADG11199.1| two component transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 201 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 25/51 (49%), Positives = 34/51 (66%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L+LA +G ++++IAE L LS TV YL A KL A NR++A Sbjct: 141 LTDREREILRLAEEGRSNKDIAEVLELSPGTVRNYLSEAAQKLGAANRVEA 191 >gi|206563716|ref|YP_002234479.1| N-acylhomoserine lactone dependent regulatory protein CepR [Burkholderia cenocepacia J2315] gi|198039756|emb|CAR55726.1| N-acylhomoserine lactone dependent regulatory protein CepR [Burkholderia cenocepacia J2315] Length = 239 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +A LT RE L +G T+ EI + L +S TVN ++ + KL A N++QA Sbjct: 167 KLSPAAGVTLTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQA 226 Query: 225 IAKAIRFGYI 234 + KAI G I Sbjct: 227 VVKAISAGLI 236 >gi|315123187|ref|YP_004065193.1| putative csg operon transcription regulator (LuxR family) protein [Pseudoalteromonas sp. SM9913] gi|315016947|gb|ADT70284.1| putative csg operon transcription regulator (LuxR family) protein [Pseudoalteromonas sp. SM9913] Length = 229 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 38/60 (63%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++LT+RE S + L G ++ +IA+KL +S HTV +L SA K ++ NR++ A R+ Sbjct: 161 KHLTKREKSVIHLIAQGASNNKIADKLNISDHTVKTHLYSAFKKTNSRNRVELANWAQRY 220 >gi|45453489|gb|AAS65458.1| quorum sensing transcriptional activator [Burkholderia thailandensis] Length = 239 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ AI G Sbjct: 176 LTHREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVNAIAMGL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|12620903|gb|AAG61131.1|AF330020_1 AHL receptor [Burkholderia cepacia] Length = 239 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +A LT RE L +G T+ EI + L +S TVN ++ + KL A N++QA Sbjct: 167 KLSPAAGVTLTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQA 226 Query: 225 IAKAIRFGYI 234 + KAI G I Sbjct: 227 VVKAISAGLI 236 >gi|81428161|ref|YP_395161.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609803|emb|CAI54849.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 201 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RET LQ +G +++E+A +L LS TV Y+ + KL A NRI+AI A G+ Sbjct: 141 LSQRETDVLQAVANGLSNKEVASQLFLSDGTVRNYMSTILSKLAASNRIEAIQIARHNGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|288573855|ref|ZP_06392212.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569596|gb|EFC91153.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 222 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 6/110 (5%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN---LTERETSCL 182 G+V+ TS F L + + + G Y + L F + +S R L+ERE L Sbjct: 102 KGFVLKTSGFDELISAIRTVSGGDNYVDSRAAGKLLNCFSEDTSRERGMSRLSERELEVL 161 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G +EIAE+L LS TV ++ KL +R QA+A A R G Sbjct: 162 YWLAQGLNGQEIAERLSLSDKTVKNHISHILAKLKVSDRTQAVAWAWRSG 211 >gi|300783390|ref|YP_003763681.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792904|gb|ADJ43279.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S+ +T RE L+L G+T+ EI +L LS++TV YL + KL A NR Q IA Sbjct: 135 ASSTAPVTAREYDVLRLVAAGHTNPEIGTELNLSINTVKTYLWTVMQKLAARNRAQLIAN 194 Query: 228 A 228 A Sbjct: 195 A 195 >gi|239933771|ref|ZP_04690724.1| response regulator [Streptomyces ghanaensis ATCC 14672] Length = 188 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 38/67 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A+ LT RE ++L +G+ + +IA KL S T+ + T +L+ NR A+A Sbjct: 122 SYPAQRLTPREVDVMRLVAEGFGTVDIAAKLCYSERTIKDIIHKLTTRLNLRNRAHAVAY 181 Query: 228 AIRFGYI 234 A+R GYI Sbjct: 182 ALREGYI 188 >gi|149914006|ref|ZP_01902538.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] gi|149812290|gb|EDM72121.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] Length = 214 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQ GY EIA+ LG+S TV ++ S KL+ ++A+A+A + G+ Sbjct: 154 LTEREAEILQAVARGYKRHEIAQHLGISAGTVGNHITSIYRKLEVSTNMEAVARASKKGF 213 Query: 234 I 234 + Sbjct: 214 L 214 >gi|296119033|ref|ZP_06837606.1| DNA-binding response regulator [Corynebacterium ammoniagenes DSM 20306] gi|295968131|gb|EFG81383.1| DNA-binding response regulator [Corynebacterium ammoniagenes DSM 20306] Length = 207 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + AG G + EEIA+ + L+ T YL SA K+ A NR +A +A G+ Sbjct: 147 LTEREAEVVNAAGQGGSVEEIAQLVFLAPGTTRNYLSSAMTKIGAQNRFEAFLRAREKGW 206 Query: 234 I 234 I Sbjct: 207 I 207 >gi|14586754|gb|AAK70349.1|AF333004_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans ATCC BAA-247] Length = 239 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +A LT RE L +G T+ EI + L +S TVN ++ + KL A N++QA Sbjct: 167 KLSPAAGVTLTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQA 226 Query: 225 IAKAIRFGYI 234 + KAI G I Sbjct: 227 VVKAISAGLI 236 >gi|172058475|ref|YP_001814935.1| two component LuxR family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990996|gb|ACB61918.1| two component transcriptional regulator, LuxR family [Exiguobacterium sibiricum 255-15] Length = 231 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG+++ I++ L +S TV ++ S K++ +R A+ +AIR G+ Sbjct: 168 LTRRECEVLQLLADGFSNRAISDTLFISEKTVKNHVSSILRKMNVPDRTGAVVEAIRRGW 227 Query: 234 IC 235 + Sbjct: 228 VV 229 >gi|325689072|gb|EGD31080.1| DNA-binding response regulator [Streptococcus sanguinis SK115] Length = 199 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +RN L+++E LQ A G +++EIAEKL LS TV Y+ + KLDA NR +A+ Sbjct: 135 SRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENRTEAVRIGQ 194 Query: 230 RFGYI 234 G++ Sbjct: 195 EKGWL 199 >gi|306822365|ref|ZP_07455744.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|309802126|ref|ZP_07696235.1| response regulator receiver domain protein [Bifidobacterium dentium JCVIHMP022] gi|304554363|gb|EFM42271.1| conserved hypothetical protein [Bifidobacterium dentium ATCC 27679] gi|308221206|gb|EFO77509.1| response regulator receiver domain protein [Bifidobacterium dentium JCVIHMP022] Length = 237 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 37/58 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ +E L+L DG ++EIA ++G+SV TV + AT+KL+A +R AIA IR Sbjct: 176 KLSNKERETLRLYADGLNTKEIAGRMGVSVATVATFERRATMKLNARSRAHAIAICIR 233 >gi|269125868|ref|YP_003299238.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310826|gb|ACY97200.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 201 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ A DG +IA +GLS TV YL +A KL A NR A+ A G+ Sbjct: 141 LTPRELDALRAAADGSPISKIARSMGLSEGTVRNYLSAAVTKLGADNRHAAVRAARDRGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|89893086|ref|YP_516573.1| hypothetical protein DSY0340 [Desulfitobacterium hafniense Y51] gi|89332534|dbj|BAE82129.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 234 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 7/113 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRS----SAARNLTERETSC 181 +GY++ ++ L N + HG Y + + F +RS + +LT RE + Sbjct: 119 SGYILKSAYDNDLINAIRTIYHGNAYLGPSITKTLIHEFAQRSLHGNESGTDLTVREQNF 178 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIAE+L +SV TV +Y KL+ R + + A++ G + Sbjct: 179 LSLMAMGYSNKEIAEELSVSVKTVESYRSKIKDKLNLKTRHELVRYALKKGLM 231 >gi|332359210|gb|EGJ37031.1| DNA-binding response regulator [Streptococcus sanguinis SK49] gi|332359828|gb|EGJ37642.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] Length = 199 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KLDA NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEKGWL 199 >gi|331266987|ref|YP_004326617.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|326683659|emb|CBZ01277.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 210 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY++ TS L N V A G A Q ++ +E + LT RE LQL Sbjct: 99 GYMLKTSSADELLNAVRKVAAGELAIEQEVSKKVEYHRNHIELHEELTARERDVLQLIAK 158 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA++L +S+ TV ++ + KL+ +R QA Sbjct: 159 GYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|291299967|ref|YP_003511245.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569187|gb|ADD42152.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 214 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 35/65 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE L+L G ++ EIA +L LS TV ++ KL +R QA+ KA Sbjct: 147 AAGLTEREAEVLRLMARGLSNAEIAARLFLSAETVKTHVAKILAKLRVRDRTQAVIKAYE 206 Query: 231 FGYIC 235 G++ Sbjct: 207 AGFVS 211 >gi|262283291|ref|ZP_06061057.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA] gi|262260782|gb|EEY79482.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA] Length = 199 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +RN L+++E LQ A G +++EIAEKL LS TV Y+ + KLDA NR +A+ Sbjct: 135 SRNPLSQQERLVLQAAATGLSNKEIAEKLFLSNGTVRNYMSAILTKLDAENRTEAVRIGQ 194 Query: 230 RFGYI 234 G++ Sbjct: 195 EKGWL 199 >gi|86742704|ref|YP_483104.1| LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86569566|gb|ABD13375.1| transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 300 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/56 (46%), Positives = 33/56 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RET L G T+ E+A +L LS TV AYL SA KLDA R +A+ +A Sbjct: 238 RLSTRETDVLAQVALGCTNAEVANRLSLSRETVKAYLQSAMRKLDAGTRYEAVVRA 293 >gi|254462674|ref|ZP_05076090.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2083] gi|206679263|gb|EDZ43750.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium HTCC2083] Length = 165 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + L+ RET + G+ + A+ + +S HT+ Y+ SA KL A+N A+A+A+ Sbjct: 99 ALKTLSPRETDAMTFLAMGFNRAKAADTMEISEHTLRVYIESARFKLGAINTTHAVARAM 158 Query: 230 RFGYI 234 G I Sbjct: 159 SHGLI 163 >gi|254392737|ref|ZP_05007910.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294811849|ref|ZP_06770492.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440412|ref|ZP_08215146.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706397|gb|EDY52209.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324448|gb|EFG06091.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 214 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 152 TLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 211 >gi|171742455|ref|ZP_02918262.1| hypothetical protein BIFDEN_01567 [Bifidobacterium dentium ATCC 27678] gi|283456459|ref|YP_003361023.1| two-component response regulator [Bifidobacterium dentium Bd1] gi|171278069|gb|EDT45730.1| hypothetical protein BIFDEN_01567 [Bifidobacterium dentium ATCC 27678] gi|283103093|gb|ADB10199.1| Two-component response regulator [Bifidobacterium dentium Bd1] Length = 237 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 37/58 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ +E L+L DG ++EIA ++G+SV TV + AT+KL+A +R AIA IR Sbjct: 176 KLSNKERETLRLYADGLNTKEIAGRMGVSVATVATFERRATMKLNARSRAHAIAICIR 233 >gi|157960462|ref|YP_001500496.1| LuxR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157845462|gb|ABV85961.1| transcriptional regulator, LuxR family [Shewanella pealeana ATCC 700345] Length = 224 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 39/69 (56%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S + LT RE + +QL G ++EIA+KL +S HTV A++ S K A NR+ Sbjct: 145 LTSEASESLEGLTNREKTIIQLVSSGARNKEIADKLCISEHTVKAHISSIFRKTQARNRV 204 Query: 223 QAIAKAIRF 231 + + A F Sbjct: 205 ELLRWAQSF 213 >gi|148654624|ref|YP_001274829.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148566734|gb|ABQ88879.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 208 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L+ RSS A LTERE L+L +G T+ EIA +L + TV ++ S KL Sbjct: 136 ILQAQTMRSSDA--LTEREGEVLKLLAEGLTNAEIAARLSVGEETVKTHVASILRKLGLA 193 Query: 220 NRIQAIAKAIRFGYI 234 +R QA A+R G++ Sbjct: 194 HRTQAAIYALRHGWV 208 >gi|83749508|ref|ZP_00946497.1| Transcriptional regulator [Ralstonia solanacearum UW551] gi|207738514|ref|YP_002256907.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] gi|83723820|gb|EAP71009.1| Transcriptional regulator [Ralstonia solanacearum UW551] gi|206591882|emb|CAQ58788.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] Length = 201 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L + G TS EIA LGLS TV+ ++ +A KL RI+A+ KA G Sbjct: 139 LSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSAGI 198 Query: 234 I 234 I Sbjct: 199 I 199 >gi|332655205|ref|ZP_08420946.1| putative transcriptional regulator, LuxR family [Ruminococcaceae bacterium D16] gi|332516065|gb|EGJ45674.1| putative transcriptional regulator, LuxR family [Ruminococcaceae bacterium D16] Length = 266 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L LA G +EEIA+K+ +S+HTV + S K+ NR+Q + Sbjct: 200 LTSREGEMLDLAVHGLGNEEIAQKMNISIHTVKKHFHSIYEKMHVKNRVQML 251 >gi|229820080|ref|YP_002881606.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565993|gb|ACQ79844.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 201 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA +G EEIA + L+ TV YL SA KL A NR +A A G+ Sbjct: 141 LTPREADVLELAAEGAPVEEIARRAALAPGTVRNYLSSAVAKLGASNRHEAARLARARGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|307328696|ref|ZP_07607868.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306885645|gb|EFN16659.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 159 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 30/52 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L LA DG + EIA L LS T+ YL + T K A NR+ AI Sbjct: 99 LTERELGVLSLAADGASIPEIARTLHLSTGTIRNYLAAITRKTGARNRVDAI 150 >gi|326441134|ref|ZP_08215868.1| response regulator receiver protein [Streptomyces clavuligerus ATCC 27064] Length = 219 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T+RE + L L G ++++IA LG+S+H V ++ + +KLD+ NR + K + G Sbjct: 153 RVTQRERAVLSLLAQGLSNQQIARALGISIHGVKRHVSNLLIKLDSSNRTEVALKVTQLG 212 Query: 233 YI 234 + Sbjct: 213 LL 214 >gi|207722648|ref|YP_002253084.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum MolK2] gi|206587830|emb|CAQ18412.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum MolK2] Length = 201 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L + G TS EIA LGLS TV+ ++ +A KL RI+A+ KA G Sbjct: 139 LSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSAGI 198 Query: 234 I 234 I Sbjct: 199 I 199 >gi|325695633|gb|EGD37533.1| DNA-binding response regulator [Streptococcus sanguinis SK150] Length = 199 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +RN L+++E LQ A G +++EIAEKL LS TV Y+ + KLDA NR +A+ Sbjct: 135 SRNPLSQQERLVLQAAATGLSNKEIAEKLFLSNGTVRNYMSAILTKLDAENRTEAVRIGQ 194 Query: 230 RFGYI 234 G++ Sbjct: 195 EKGWL 199 >gi|324996115|gb|EGC28026.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|327460591|gb|EGF06926.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327488948|gb|EGF20745.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|332365506|gb|EGJ43266.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 199 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KLDA NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEQGWL 199 >gi|298385200|ref|ZP_06994759.1| transcriptional regulator, LuxR family [Bacteroides sp. 1_1_14] gi|298262344|gb|EFI05209.1| transcriptional regulator, LuxR family [Bacteroides sp. 1_1_14] Length = 258 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G S+EIA+KL +S+HTVN + + KL N I+ AIR GY Sbjct: 197 LTKREAEILRLIQKGLLSKEIADKLCVSIHTVNIHRQNLLRKLGVQNSIE----AIRIGY 252 >gi|298251835|ref|ZP_06975638.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546427|gb|EFH80295.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1065 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 35/56 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE L L G +++EIA+ L +S+ TV ++G KL A NR QAIA+A Sbjct: 1004 SLTRREQEVLCLLAAGASNQEIAQTLVISLDTVKKHVGRLLDKLGATNRTQAIAQA 1059 >gi|260467229|ref|ZP_05813405.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029004|gb|EEW30304.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 210 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L +G ++ IA +L +SVHT ++ + +KL A NR AIA A+R G Sbjct: 148 LSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTDAIAIAMRQGL 207 Query: 234 I 234 + Sbjct: 208 V 208 >gi|224282751|ref|ZP_03646073.1| two-component response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313139910|ref|ZP_07802103.1| two-component response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313132420|gb|EFR50037.1| two-component response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 169 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R L++RE L L D Y++ EIAE+LG++ TV+ + A V+LD R +A+ Sbjct: 109 RTLSKREREVLGLYADNYSTAEIAERLGIADSTVSVVVRHAKVRLDVAARSEAV 162 >gi|187930859|ref|YP_001901345.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|241664112|ref|YP_002982472.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12D] gi|187728903|gb|ACD30066.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|240866139|gb|ACS63800.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] Length = 201 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 3/73 (4%) Query: 165 KKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + R+ AA L+ERE L + G TS EIA LGLS TV+ ++ +A KL R Sbjct: 127 RPRTHAAHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMDNAREKLGVATR 186 Query: 222 IQAIAKAIRFGYI 234 I+A+ +A G I Sbjct: 187 IEAVVRASSAGII 199 >gi|310826620|ref|YP_003958977.1| salavaricin two-component response regulator [Eubacterium limosum KIST612] gi|308738354|gb|ADO36014.1| salavaricin two-component response regulator [Eubacterium limosum KIST612] Length = 204 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +F + + LT ET LQL +GY + IAE L S T++ ++ KLD + + Sbjct: 126 VFPRANEYIEELTATETKILQLLSEGYKRKAIAEILFSSERTISNHIQHIFDKLDVSSSL 185 Query: 223 QAIAKAIRFGYI 234 +A+ K I+ GYI Sbjct: 186 EAVTKGIKLGYI 197 >gi|308235093|ref|ZP_07665830.1| transcriptional regulator, LuxR family protein [Gardnerella vaginalis ATCC 14018] gi|311115228|ref|YP_003986449.1| hypothetical protein HMPREF0421_21344 [Gardnerella vaginalis ATCC 14019] gi|310946722|gb|ADP39426.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019] Length = 246 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F+ L K RS + L +E + L GYT+ +IA +LGL +T+N ++ KL Sbjct: 147 FIRLSKSRSRSV--LPPQELKIMDLLAKGYTTNQIASQLGLMPNTINTHIHRIYKKLHVS 204 Query: 220 NRIQAIA 226 NR+QAI+ Sbjct: 205 NRVQAIS 211 >gi|29347298|ref|NP_810801.1| LuxR family transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253572832|ref|ZP_04850231.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|29339197|gb|AAO76995.1| transcriptional regulator, LuxR family [Bacteroides thetaiotaomicron VPI-5482] gi|251837564|gb|EES65656.1| transcriptional regulator [Bacteroides sp. 1_1_6] Length = 258 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 4/60 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G S+EIA+KL +S+HTVN + + KL N I+ AIR GY Sbjct: 197 LTKREAEILRLIQKGLLSKEIADKLCVSIHTVNIHRQNLLRKLGVQNSIE----AIRIGY 252 >gi|115358865|ref|YP_776003.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|13508495|gb|AAK27306.1| AHL receptor [Burkholderia ambifaria] gi|115284153|gb|ABI89669.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 239 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 40/72 (55%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L K ++ LT RE L+ +G T+ EI + L +S TVN ++ + KL A N++ Sbjct: 165 LPKLSPESSVTLTAREREVLRWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKV 224 Query: 223 QAIAKAIRFGYI 234 QA+ KAI G I Sbjct: 225 QAVVKAIGAGLI 236 >gi|327468268|gb|EGF13753.1| DNA-binding response regulator [Streptococcus sanguinis SK330] Length = 199 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KLDA NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEKGWL 199 >gi|149181561|ref|ZP_01860055.1| hypothetical protein BSG1_13616 [Bacillus sp. SG-1] gi|148850675|gb|EDL64831.1| hypothetical protein BSG1_13616 [Bacillus sp. SG-1] Length = 199 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 38/72 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + LT RE L+L DG ++EIA++L + TV Y+ + KL NR Sbjct: 126 ELIEDAYGEGNPLTVREIEVLELVADGKNTKEIADELSIKTGTVRNYISTILDKLQVKNR 185 Query: 222 IQAIAKAIRFGY 233 I+AI ++ G+ Sbjct: 186 IEAITQSKEKGW 197 >gi|329907385|ref|ZP_08274651.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium IMCC9480] gi|327546980|gb|EGF31877.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium IMCC9480] Length = 267 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE ++ DG T+ EIA L +S +VN ++ + KLDA N+ A+ KA FG Sbjct: 202 LSQRERDVIRWCADGKTNAEIAMILNISTSSVNFHVLNFIKKLDASNKTHAVMKAASFGL 261 Query: 234 I 234 + Sbjct: 262 L 262 >gi|302557514|ref|ZP_07309856.1| LuxR family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302475132|gb|EFL38225.1| LuxR family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 144 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G T+ AE+LG++ TV AYL SA KL R QA+ A R G Sbjct: 82 RLTPREVDVLACVAAGATNGVAAERLGVTAETVKAYLRSAMRKLGVRTRGQAVVAARRAG 141 Query: 233 YI 234 ++ Sbjct: 142 WL 143 >gi|311899082|dbj|BAJ31490.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 215 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 33/58 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 NLTERE L DG ++ EIA L LS TV ++ + +KLD +R QA A+R Sbjct: 154 NLTEREREVLSHIADGRSNREIARTLHLSEKTVKTHVSNILMKLDVADRTQAALWAVR 211 >gi|300781389|ref|ZP_07091243.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533096|gb|EFK54157.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 228 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + LTERE L G G+T+ EIAE+L +S+ TV ++G +K + +R+ A A Sbjct: 156 AIQELTEREHEILIAVGRGWTNTEIAERLFISMPTVKTHVGRVLMKTHSRDRVHAALFAY 215 Query: 230 RFGYIC 235 R G + Sbjct: 216 RTGLVS 221 >gi|221196069|ref|ZP_03569116.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2M] gi|221202743|ref|ZP_03575762.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2] gi|221176677|gb|EEE09105.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2] gi|221182623|gb|EEE15023.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2M] Length = 239 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 163 LFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + K S AR LT RE L +G T+ EI + L +S TVN ++ + KL A N+ Sbjct: 164 MVPKLSPEARVTLTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGASNK 223 Query: 222 IQAIAKAIRFGYI 234 +QA+ KAI G I Sbjct: 224 VQAVVKAISAGLI 236 >gi|325697545|gb|EGD39431.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|328944949|gb|EGG39107.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] Length = 199 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KLDA NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEKGWL 199 >gi|253575444|ref|ZP_04852781.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845091|gb|EES73102.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 201 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L+L+ G ++ EIAE L L+ TV YL A KL R QA +A G+ Sbjct: 141 LTERETEVLRLSHAGRSTREIAETLFLTEGTVRNYLSLAIQKLGVETRQQATERAKERGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|282863211|ref|ZP_06272271.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562193|gb|EFB67735.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 216 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE++ L+L G ++ EIA +L + V TV ++ + KL A +R QA+ A G+ Sbjct: 153 LTERESAVLRLMARGLSNAEIAAELVVGVQTVKTHVSAVLAKLGARDRTQAVIAAYESGF 212 Query: 234 IC 235 + Sbjct: 213 VA 214 >gi|295689487|ref|YP_003593180.1| LuxR family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295431390|gb|ADG10562.1| two component transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 207 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ERE L+ +G ++EIA L LS TV ++ S KLD +R QA+ A R Sbjct: 142 AEPLSEREIDVLKRVANGAANKEIARALSLSEDTVKGHMRSIFSKLDVTDRTQAVTVAHR 201 Query: 231 FGYIC 235 G I Sbjct: 202 RGIIA 206 >gi|182679885|ref|YP_001834031.1| LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635768|gb|ACB96542.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 255 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 87/225 (38%), Gaps = 21/225 (9%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 HL + + F +T+ +R L +Y D D ++L E D HF Sbjct: 30 HLTEEMCLSLGFPWFTLIRGKQLAKRDDRSILLTSYPQDWVD--HVLKEKRHLDDPVHFA 87 Query: 82 SGLL--PIIWQSIQEETVIESSG--QLSVRLEGGLLPFAGIAFPVRL-GFH-------KN 129 + L + W I + + S L GL G P+RL GF K Sbjct: 88 ASRLVNGLSWNEIGQYVTLNSRQIETLESARRHGL--NTGFTIPLRLDGFENAMFSMAKR 145 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + TSE +LA V + ++T +F +L+ R+ C+ L GY Sbjct: 146 KANVITSEERLLACLVGSVTFARAHALVTADAGIF-----TPVHLSPRQVDCVALLAKGY 200 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA +LG+S TV Y+ A R Q A+R GY+ Sbjct: 201 SDFEIARQLGISPETVREYITKARRSYGVKRRFQLAILAVRDGYL 245 >gi|297158565|gb|ADI08277.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 218 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 4/90 (4%) Query: 149 AHGACYQVITDFL----ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 A +++ DF+ E RS LT RE LQL G G ++ EIA +L +S HT Sbjct: 126 APSVARRLVADFVRRPRETAAPRSDRLAVLTARERETLQLLGRGLSNAEIAAELVVSEHT 185 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++ + KL +RIQA+ A G + Sbjct: 186 VKTHVSNVLTKLGLRDRIQAVICAYETGLV 215 >gi|14586756|gb|AAK70350.1|AF333005_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia stabilis] Length = 239 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +A LT RE L +G T+ EI + L +S TVN ++ + KL A N++QA Sbjct: 167 KLSPAAGVTLTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQA 226 Query: 225 IAKAIRFGYI 234 + KAI G I Sbjct: 227 VVKAISAGLI 236 >gi|284042986|ref|YP_003393326.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Conexibacter woesei DSM 14684] gi|283947207|gb|ADB49951.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Conexibacter woesei DSM 14684] Length = 873 Score = 45.8 bits (107), Expect = 0.005, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + L+ G + EIA +LG+S +TV ++ S KLD +R QA+A+A G Sbjct: 811 LSQRERAILRYLPSGLSKREIAGELGVSANTVKTHVSSIYRKLDVRSRAQAVARARELGL 870 Query: 234 I 234 + Sbjct: 871 L 871 >gi|260551305|ref|ZP_05825506.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624] gi|260405619|gb|EEW99110.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624] Length = 238 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ +G TS EIA+ +G++ TVN +L ++ KL+ N+I A +A+ G Sbjct: 178 LTNREKEALRWTAEGKTSAEIAQIIGVTERTVNFHLCNSMQKLNVNNKISAAIRAVMLG 236 >gi|239932624|ref|ZP_04689577.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440983|ref|ZP_06580373.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343878|gb|EFE70834.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L +S TV +++ + KL A +R QA+ A G Sbjct: 156 RLTEREAEVLRLMARGLSNAEIAARLVVSTETVKSHVSAVLAKLGARDRTQAVIAAYESG 215 Query: 233 YIC 235 ++ Sbjct: 216 FVA 218 >gi|87302655|ref|ZP_01085472.1| possible DNA-binding response regulator [Synechococcus sp. WH 5701] gi|87282999|gb|EAQ74956.1| possible DNA-binding response regulator [Synechococcus sp. WH 5701] Length = 237 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 2/80 (2%) Query: 157 ITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + D L L + R A L+ RE L+L GY + +IA ++ LSV TV ++L SA Sbjct: 150 LRDLLALACRASRDPAGPGLSARELEVLELVVQGYQNPQIASRMHLSVETVRSHLKSAFQ 209 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL A R A A+ G + Sbjct: 210 KLGATGRTHAAVMAVCQGLV 229 >gi|163848683|ref|YP_001636727.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|163669972|gb|ABY36338.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] Length = 890 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Query: 157 ITDFLELFKK-----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + + L F K +SS LTERE L+L +G ++ EIAEKL LSV TV ++ Sbjct: 807 VAELLAAFGKPAQVVQSSLIEPLTEREIEVLRLIAEGLSNPEIAEKLVLSVGTVKTHVKH 866 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R++A A G + Sbjct: 867 IYGKLNVDDRVKAAGMARELGLL 889 >gi|329940703|ref|ZP_08289983.1| two component response regulator [Streptomyces griseoaurantiacus M045] gi|329299997|gb|EGG43895.1| two component response regulator [Streptomyces griseoaurantiacus M045] Length = 213 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 35/62 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R Sbjct: 149 AGTLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVR 208 Query: 231 FG 232 G Sbjct: 209 HG 210 >gi|315641236|ref|ZP_07896313.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315483003|gb|EFU73522.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 209 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL +G +++EIA++L +++ TV ++ + KL+ +R QA A + GY Sbjct: 148 LTNREKEVLQLISNGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQAAIYAFKHGY 207 Query: 234 I 234 I Sbjct: 208 I 208 >gi|298250464|ref|ZP_06974268.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548468|gb|EFH82335.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G S+EI +LG++ TV +YL S KLD +R A+A AI G Sbjct: 157 QLTEREQEVLAGIATGERSKEIGARLGITRRTVESYLNSIYTKLDVDSRAAAVAVAIERG 216 Query: 233 YI 234 + Sbjct: 217 LL 218 >gi|213966477|ref|ZP_03394650.1| LuxR-family transcriptional regulator [Corynebacterium amycolatum SK46] gi|213950876|gb|EEB62285.1| LuxR-family transcriptional regulator [Corynebacterium amycolatum SK46] Length = 278 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 1/99 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ MLAN V E +V+ D + + R L+ RE L G+T+ E A Sbjct: 180 SKLRMLANRVDDEKLRQELEVLCDQM-VTPVRVKQTTKLSARELDVLACVALGHTNVEAA 238 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E++G+ TV +YL S KL A R +A+ A R G + Sbjct: 239 EEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 277 >gi|196229558|ref|ZP_03128423.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226790|gb|EDY21295.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 210 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 38/65 (58%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AA ++++RE LQL G ++EIA LG+S TV + + VK+ +R QA ++ I Sbjct: 143 AAPDVSDREREVLQLIARGKANKEIAAALGISEETVKRHASNLFVKMGVADRAQATSEGI 202 Query: 230 RFGYI 234 R G I Sbjct: 203 RRGLI 207 >gi|23098617|ref|NP_692083.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776844|dbj|BAC13118.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 209 Score = 45.8 bits (107), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 10/101 (9%) Query: 131 YVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 Y++ TS +AN + A G +++T+F KK +LTERE L Sbjct: 101 YILKTSTANEIANAIKKAASGENVIEPKVASKMMTNFQSQKKKLHD---DLTEREREVLL 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G+G T++EI EKL + V TV ++ + KLD +R QA Sbjct: 158 CIGEGLTNQEIGEKLYIGVKTVKTHVSNILSKLDVHDRTQA 198 >gi|302869001|ref|YP_003837638.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315504528|ref|YP_004083415.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302571860|gb|ADL48062.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315411147|gb|ADU09264.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 222 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Query: 142 ANEVIIEAHGACYQ----VITDFLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAE 196 A+EV+ A A D E K+R + + L+ RE L+L DG + IA+ Sbjct: 117 ADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRLLADGMSVAGIAK 176 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S T ++ KL A NR QA+ A+R G + Sbjct: 177 QLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 214 >gi|253997049|ref|YP_003049113.1| LuxR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983728|gb|ACT48586.1| transcriptional regulator, LuxR family [Methylotenera mobilis JLW8] Length = 243 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 15/124 (12%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-------- 171 P+ +G G + + + L L+ +I Q I+ L L K++S+ Sbjct: 123 IPIAIGQQSVGLIALSGQNLQLSPHELI-----TLQSISGILGLALKQASSMSAEDKDLT 177 Query: 172 --RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT RE L G ++ E+A KLG+S TV ++ KL+ +R QA KA Sbjct: 178 VIEHLTPREREVFALLPSGLSNRELATKLGISAGTVKIHVERVLSKLNLRDRTQAAVKAY 237 Query: 230 RFGY 233 GY Sbjct: 238 ELGY 241 >gi|237713861|ref|ZP_04544342.1| transcriptional regulator [Bacteroides sp. D1] gi|262409230|ref|ZP_06085774.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|294645794|ref|ZP_06723478.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294809468|ref|ZP_06768172.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] gi|229446017|gb|EEO51808.1| transcriptional regulator [Bacteroides sp. D1] gi|262352977|gb|EEZ02073.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|292638873|gb|EFF57207.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294443340|gb|EFG12103.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] Length = 255 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 33/53 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 NLT RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI Sbjct: 193 NLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAI 245 >gi|222526625|ref|YP_002571096.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|222450504|gb|ACM54770.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Chloroflexus sp. Y-400-fl] Length = 878 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 44/83 (53%), Gaps = 5/83 (6%) Query: 157 ITDFLELFKK-----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + + L F K +SS LTERE L+L +G ++ EIAEKL LSV TV ++ Sbjct: 795 VAELLAAFGKPAQVVQSSLIEPLTEREIEVLRLIAEGLSNPEIAEKLVLSVGTVKTHVKH 854 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R++A A G + Sbjct: 855 IYGKLNVDDRVKAAGMARELGLL 877 >gi|78061902|ref|YP_371810.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77969787|gb|ABB11166.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 239 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +A LT RE L +G T+ EI + L +S TVN ++ + KL A N++QA Sbjct: 167 KLAPAAGVTLTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQA 226 Query: 225 IAKAIRFGYI 234 + KAI G I Sbjct: 227 VVKAISAGLI 236 >gi|42525668|ref|NP_970766.1| DNA-binding response regulator [Treponema denticola ATCC 35405] gi|41815679|gb|AAS10647.1| DNA-binding response regulator [Treponema denticola ATCC 35405] gi|325475224|gb|EGC78409.1| DNA-binding response regulator [Treponema denticola F0402] Length = 201 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++I+ + RS +L +RET L+L DG ++EIA +L LS TV Y+ S Sbjct: 125 EIISKIPQTKPARSQFKEDLNDRETDILELVADGLNNKEIANRLSLSEGTVRNYVSSILE 184 Query: 215 KLDAVNRIQAIA 226 KL+ +R Q + Sbjct: 185 KLNLRDRTQLVV 196 >gi|163848189|ref|YP_001636233.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222526094|ref|YP_002570565.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669478|gb|ABY35844.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222449973|gb|ACM54239.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 228 Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L G+T+ EIA +L +S TV ++ S KL +R QA+ A+R G+ Sbjct: 161 LSARELEVLELVAAGHTNREIAARLDISNQTVKNHISSILRKLAVNDRTQAVVYAMRRGW 220 Query: 234 I 234 I Sbjct: 221 I 221 >gi|330964999|gb|EGH65259.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 785 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 10/125 (8%) Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 G LLPF + H+ + + F L N + E AC++ + + Sbjct: 670 GALLPFRVLLAEHSQWLHEQ---LLQAPFCKLCN-ALREKFPACFKPAA------PEAAH 719 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A Sbjct: 720 GSDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAK 779 Query: 230 RFGYI 234 G + Sbjct: 780 ILGLL 784 >gi|302525941|ref|ZP_07278283.1| two-component system response regulator [Streptomyces sp. AA4] gi|302434836|gb|EFL06652.1| two-component system response regulator [Streptomyces sp. AA4] Length = 214 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G ++ EIA +L L + TV ++G+ KL A +R QA+ +A G+ Sbjct: 150 LTERERDVLRLMAAGLSNGEIAAELYLGLQTVKTHVGNVLSKLGARDRTQAVIRAYESGF 209 Query: 234 I 234 + Sbjct: 210 V 210 >gi|213963027|ref|ZP_03391286.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena Capno] gi|213954368|gb|EEB65691.1| transcriptional regulator, LuxR family [Capnocytophaga sputigena Capno] Length = 235 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 38/62 (61%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L LA G++S+EIAEKL +S +TVN + + K +A + I+AI A + Sbjct: 172 AFTLTPREKEILTLASQGFSSKEIAEKLFISTYTVNRHRQNIREKFNAESLIEAIDIARK 231 Query: 231 FG 232 G Sbjct: 232 KG 233 >gi|212633209|ref|YP_002309734.1| regulatory protein LuxR:response regulator receiver [Shewanella piezotolerans WP3] gi|212554693|gb|ACJ27147.1| Regulatory protein, LuxR:Response regulator receiver [Shewanella piezotolerans WP3] Length = 188 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L ++E LQLAG+G ++ EIA L ++ TV YL A KL A NRI A A + G+ Sbjct: 128 LNDKERKALQLAGEGKSTSEIAAMLFIAEGTVRNYLSEAISKLHATNRIDAARIAQQKGW 187 Query: 234 I 234 + Sbjct: 188 L 188 >gi|84496768|ref|ZP_00995622.1| putative respose regulatory protein [Janibacter sp. HTCC2649] gi|84383536|gb|EAP99417.1| putative respose regulatory protein [Janibacter sp. HTCC2649] Length = 217 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 39/63 (61%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ERE L L G+G +++EIA++L +S TV +L KL+A +R A+A A R Sbjct: 154 RPLSEREREVLVLVGEGLSNDEIAKQLFISRATVKTHLRHLFGKLEADSRTGAVATARRL 213 Query: 232 GYI 234 G I Sbjct: 214 GLI 216 >gi|77461110|ref|YP_350617.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77385113|gb|ABA76626.1| LuxR family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 235 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE ++L G T+ EI + L ++ TVN ++ + VKL+A N++ AI KA + G+ Sbjct: 175 LSTRELEIVRLCAYGKTAWEIGQILNVAERTVNYHIKNLIVKLNACNKMSAIVKASKLGF 234 Query: 234 I 234 + Sbjct: 235 L 235 >gi|307135373|gb|ADN33401.1| HanR [Halomonas anticariensis] Length = 252 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 38/56 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ + DG TS EI++KL ++ T++ ++ +A KL N++QA++KA+ Sbjct: 192 LSVREADILRYSADGLTSSEISKKLYVTKSTIDFHIKNAIDKLGCKNKVQAVSKAL 247 >gi|295085346|emb|CBK66869.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacteroides xylanisolvens XB1A] Length = 245 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 33/53 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 NLT RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI Sbjct: 183 NLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAI 235 >gi|240142442|ref|YP_002966952.1| hypothetical protein MexAM1_META2p0768 [Methylobacterium extorquens AM1] gi|240012386|gb|ACS43611.1| Hypothetical protein MexAM1_META2p0768 [Methylobacterium extorquens AM1] Length = 266 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE LQ G ++ IA +L +S HTV ++ A +KLDA N A+A A+R G Sbjct: 204 DLSRREIEVLQRCAHGLKTDAIAAELEVSAHTVREHIDRARLKLDARNLSHAVALAMRAG 263 Query: 233 YI 234 I Sbjct: 264 LI 265 >gi|257057243|ref|YP_003135075.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587115|gb|ACU98248.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 216 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK--KRSSA-AR----N 173 L F NG+++ E +ML + A G V + + +R+SA AR + Sbjct: 95 LRFGANGFLLKDIEPIMLVRAIRDLARGGAVLDPGVAARMVNAHRDGQRASAPARELLAS 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + L G G ++ EI +L LS TV Y+ + K+ A NR+QA A R G Sbjct: 155 LSDREREVVTLIGQGLSNAEIGGRLHLSEATVKGYVSAVLSKIGAANRVQAALLAYRGGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|223043216|ref|ZP_03613263.1| two-component response regulator [Staphylococcus capitis SK14] gi|222443427|gb|EEE49525.1| two-component response regulator [Staphylococcus capitis SK14] Length = 200 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 38/66 (57%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S + LT +E L+ G+G +S+EIAEKL LS TV Y + K+ + NR A KA Sbjct: 135 SESNPLTHKEQVVLKEIGNGLSSKEIAEKLYLSNGTVRNYTSTIIDKMCSENRFDAWKKA 194 Query: 229 IRFGYI 234 I G+I Sbjct: 195 IAKGWI 200 >gi|146308673|ref|YP_001189138.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] gi|145576874|gb|ABP86406.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] Length = 914 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 38/69 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + S L+ RE + LQL G +++EI+E+L +S+HTV + KL R QA+ Sbjct: 845 EESGPTEKLSGREMAVLQLIARGCSNQEISERLFISLHTVKTHARHINSKLGVERRTQAV 904 Query: 226 AKAIRFGYI 234 A+A G + Sbjct: 905 ARAKGLGLL 913 >gi|298241349|ref|ZP_06965156.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554403|gb|EFH88267.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 158 TDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 TD RS A LTERE L+ G S+EIA +LG+S+ TV ++L S K Sbjct: 145 TDAFHPTPSRSQAEGESELTERERDVLEAVACGERSKEIASRLGISLRTVESHLTSIYAK 204 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +R A+A I+ G + Sbjct: 205 LGVDSRASAVAVGIKRGLL 223 >gi|298251729|ref|ZP_06975532.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546321|gb|EFH80189.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 2/79 (2%) Query: 158 TDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 TD RS A LTERE L+ G S+EIA +LG+S+ TV ++L S K Sbjct: 145 TDAFHPTPSRSQAEGESELTERERDVLEAVACGERSKEIASRLGISLRTVESHLTSIYAK 204 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +R A+A I+ G + Sbjct: 205 LGVDSRASAVAVGIKRGLL 223 >gi|332291578|ref|YP_004430187.1| transcriptional regulator, LuxR family [Krokinobacter diaphorus 4H-3-7-5] gi|332169664|gb|AEE18919.1| transcriptional regulator, LuxR family [Krokinobacter diaphorus 4H-3-7-5] Length = 476 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S NL++RET L GYT+++I E+L +S+ TV + + KLD NR + I K Sbjct: 416 STTHNLSKRETEVLLELSKGYTNKQIGEELHISIATVKFHTSNIYAKLDVSNRSEVIEK 474 >gi|238060304|ref|ZP_04605013.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|330469356|ref|YP_004407099.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|237882115|gb|EEP70943.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|328812327|gb|AEB46499.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 222 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Query: 142 ANEVIIEAHGACYQ----VITDFLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAE 196 A+EV+ A A D E K+R + + L+ RE L+L DG + IA+ Sbjct: 117 ADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRLLADGMSVAGIAK 176 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S T ++ KL A NR QA+ A+R G + Sbjct: 177 QLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 214 >gi|145595794|ref|YP_001160091.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305131|gb|ABP55713.1| response regulator receiver [Salinispora tropica CNB-440] Length = 221 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Query: 142 ANEVIIEAHGACYQ----VITDFLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAE 196 A+EV+ A A D E K+R + + L+ RE L+L DG + IA+ Sbjct: 116 ADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRLLADGMSVAGIAK 175 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S T ++ KL A NR QA+ A+R G + Sbjct: 176 QLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 213 >gi|12620905|gb|AAG61132.1|AF330021_1 AHL receptor [Burkholderia stabilis] Length = 239 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +A LT RE L +G T+ EI + L +S TVN ++ + KL A N++QA Sbjct: 167 KLSPAAGVTLTAREREVLCWTAEGKTACEIGQILSISGRTVNFHVNNILEKLGATNKVQA 226 Query: 225 IAKAIRFGYI 234 + KAI G I Sbjct: 227 VVKAISAGLI 236 >gi|111017172|ref|YP_700144.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110816702|gb|ABG91986.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 219 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQL G ++ EIA +L LS T+ +++G KL+ +R+QA+ A G Sbjct: 155 LTEREREVLQLVATGLSNTEIAGQLFLSESTIKSHVGRILTKLNVRDRVQAVVLAYETGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|320007212|gb|ADW02062.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 223 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I ++L+ + R +TERE L+L +G++S+EIA L +SV TV + Sbjct: 137 GAVTALIRNYLDRVRDGGDVPDRAITEREEEILKLVAEGHSSKEIAGMLVISVKTVERHR 196 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G I Sbjct: 197 ANLLQKLGLRDRLELTRYAIRAGLI 221 >gi|159039051|ref|YP_001538304.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157917886|gb|ABV99313.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 221 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Query: 142 ANEVIIEAHGACYQ----VITDFLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAE 196 A+EV+ A A D E K+R + + L+ RE L+L DG + IA+ Sbjct: 116 ADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVLRLLADGMSVAGIAK 175 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S T ++ KL A NR QA+ A+R G + Sbjct: 176 QLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 213 >gi|148253086|ref|YP_001237671.1| LuxR transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405259|gb|ABQ33765.1| Regulatory protein, LuxR [Bradyrhizobium sp. BTAi1] Length = 201 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 32/57 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 NL RE L G TS EIA+ LGLS TV+ ++ +A +KL R QA KA+ Sbjct: 138 NLNHREIETLTWVARGKTSAEIAKILGLSKRTVDFHIDNARIKLGVATRTQAAIKAV 194 >gi|299140322|ref|ZP_07033486.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298597710|gb|EFI53884.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 200 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 40/62 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L DG+ ++++A+ LG++ TVN ++ + KL A +R A+A A+R G Sbjct: 137 HLTVRELEVLALIRDGHANKQVADILGIAETTVNFHISNLVKKLKANDRTHAMAIAVRRG 196 Query: 233 YI 234 ++ Sbjct: 197 FL 198 >gi|284991855|ref|YP_003410409.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284065100|gb|ADB76038.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 248 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 43/73 (58%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L ++ LTERE L L G ++ +IA++L +SVHTV ++ + + KL A ++ Sbjct: 173 RLHRQSGGGGAVLTEREREILDLLARGLSNADIAQQLTISVHTVRNHVANLSAKLGAHSK 232 Query: 222 IQAIAKAIRFGYI 234 ++ ++ A+R G + Sbjct: 233 LEVLSIAVRDGLV 245 >gi|108802949|ref|YP_642886.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764192|gb|ABG03074.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 222 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R +AAR LT RE LQ +G ++ EIAE+L +SV T ++ + KL A +R+QA+ Sbjct: 150 RENAAR-LTPREREVLQALAEGLSNREIAERLHMSVDTERTHMVNILSKLGAHSRLQALV 208 Query: 227 KAIRFGYI 234 A R G + Sbjct: 209 LAARAGVV 216 >gi|323180293|gb|EFZ65845.1| transcriptional regulator, LuxR family protein [Escherichia coli 1180] Length = 123 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/69 (40%), Positives = 39/69 (56%), Gaps = 1/69 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S+ LT RE+ LQL DG T++EIA L LS T+ + + KLD + I+ I Sbjct: 54 RYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKTIETHRLNIMKKLDVYSGIELIK 113 Query: 227 KAIRFGYIC 235 A+R G +C Sbjct: 114 TALRMG-VC 121 >gi|298482318|ref|ZP_07000505.1| transcriptional regulator, LuxR family [Bacteroides sp. D22] gi|298271605|gb|EFI13179.1| transcriptional regulator, LuxR family [Bacteroides sp. D22] Length = 255 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 33/53 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 NLT RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI Sbjct: 193 NLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAI 245 >gi|311029481|ref|ZP_07707571.1| two-component response regulator [Bacillus sp. m3-13] Length = 214 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 6/95 (6%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLG 199 + NE +IE +V + + F+ S + LT+RE L GDG T++EI+E+L Sbjct: 121 VQNEPVIEP-----KVASKMMNRFRSPSKLPHDDLTDRELEVLMCLGDGLTNQEISEELF 175 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + TV ++ + KL +R QA A R G + Sbjct: 176 IGIKTVKTHVSNILGKLQVADRTQAAIYANRHGVL 210 >gi|302554479|ref|ZP_07306821.1| response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472097|gb|EFL35190.1| response regulator [Streptomyces viridochromogenes DSM 40736] Length = 222 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + A +T RE L+L +G + EIA KL S TV + T +L NR A+A A Sbjct: 157 APASGMTPRELDVLRLVAEGLDTGEIASKLSYSERTVKNVMHGLTTRLHLRNRAHAVAHA 216 Query: 229 IRFGYI 234 +R GYI Sbjct: 217 LREGYI 222 >gi|218437802|ref|YP_002376131.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218170530|gb|ACK69263.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 228 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 6/84 (7%) Query: 155 QVITDFLELFK------KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +V T F F S +LT+RE LQ G ++E+IA++L ++V TV A+ Sbjct: 138 EVATHFFHYFNTYCDPLSNSDKELDLTKREKEVLQYLIQGLSNEQIAKQLYITVATVKAH 197 Query: 209 LGSATVKLDAVNRIQAIAKAIRFG 232 L + KL NR QAI A++ Sbjct: 198 LTAIFNKLGVKNRTQAIVAALKMN 221 >gi|256751296|ref|ZP_05492176.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus CCSD1] gi|256749851|gb|EEU62875.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus CCSD1] Length = 205 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 5/105 (4%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERET 179 ++LG GY++ +E+ L + +G Y + +E + + ++LT RE Sbjct: 91 LKLGVE--GYILKDAEYDDLIKAIKTIYNGGVY-IHPSLMEEIDNIDQETLKKDLTPREI 147 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+L +GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 148 EILKLISNGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQA 192 >gi|255532183|ref|YP_003092555.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] gi|255345167|gb|ACU04493.1| regulatory protein LuxR [Pedobacter heparinus DSM 2366] Length = 151 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL RE LQL G+++ EIA L +S+ TV ++ + VK++ +RI+A+ KA R Sbjct: 89 NLNSREYEILQLLAKGHSNAEIAGDLFISLSTVKTHVSNLFVKMNVKSRIKALEKAKRLK 148 Query: 233 YI 234 I Sbjct: 149 II 150 >gi|160883554|ref|ZP_02064557.1| hypothetical protein BACOVA_01526 [Bacteroides ovatus ATCC 8483] gi|156110967|gb|EDO12712.1| hypothetical protein BACOVA_01526 [Bacteroides ovatus ATCC 8483] Length = 275 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 33/53 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 NLT RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI Sbjct: 213 NLTNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAI 265 >gi|70730988|ref|YP_260729.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68345287|gb|AAY92893.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 240 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 18/166 (10%) Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 H + P IW + IES L + G L I P G Y + + Sbjct: 83 HSPTPYFPTIW----SDDFIESKLFLQAGKDYGFLSGMSIGLPCSFG----NYGVLSIAS 134 Query: 139 LM---LANEVIIEAHGACYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDG 188 L L ++ +V ++ ++ S R L +RE L+ DG Sbjct: 135 LKQGSLQGVDPLDWSACVLKVYAKLIDYINRQHSLQRIFNDHQQALNDREIDILRYTADG 194 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S +IA ++ LS +++ ++ KLD+ N+ QA+A AI+ G I Sbjct: 195 MSSTDIAMRMHLSKSSIDYHIAKILQKLDSPNKHQALALAIKKGKI 240 >gi|218440594|ref|YP_002378923.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218173322|gb|ACK72055.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 90 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 38/62 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE ++L +G T+ EIA +L +S TV+ ++ + K NR++ + A+++G Sbjct: 12 LSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVELVRWALQWGK 71 Query: 234 IC 235 +C Sbjct: 72 VC 73 >gi|300782102|ref|YP_003762393.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299791616|gb|ADJ41991.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 208 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 33/58 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L+L G G ++ EIAE+L L+ TV Y+ S KL R QA A +R Sbjct: 148 TLTERERDVLELIGQGLSNREIAERLFLAEKTVKNYVTSVLAKLGMQRRTQAAAWIVR 205 >gi|294340032|emb|CAZ88396.1| autoinducer-binding transcriptional regulator LuxR family [Thiomonas sp. 3As] Length = 237 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ DG T+ EIA+ L +S T N ++ +A KL A N+ A+ +A G Sbjct: 176 LTDREIEVLRWTADGKTASEIADILNISERTANFHIANAIAKLHAPNKTAAVIRAGMLGM 235 Query: 234 I 234 + Sbjct: 236 L 236 >gi|238064585|ref|ZP_04609294.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237886396|gb|EEP75224.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 256 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE+ L L DG ++++IA +L +S H + S +KL + NR A+ AI+ G Sbjct: 190 KLTSRESEALALLADGLSNKQIARRLSISDHGAKRLVASLLLKLGSPNRTMAVVTAIKSG 249 Query: 233 YI 234 I Sbjct: 250 LI 251 >gi|194291367|ref|YP_002007274.1| transcriptional regulator LuxR family [Cupriavidus taiwanensis LMG 19424] gi|193225271|emb|CAQ71213.1| Putative Transcriptional Regulator, LuxR family [Cupriavidus taiwanensis LMG 19424] Length = 918 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L L +GY++ +AE+L +S TV +L + + KL A NR QA+A A + G Sbjct: 858 LTPKEQKVLHLLAEGYSNVAMAERLFVSETTVRTHLRNISAKLHASNRTQAVAIARQLGL 917 Query: 234 I 234 + Sbjct: 918 L 918 >gi|16125402|ref|NP_419966.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221234145|ref|YP_002516581.1| two-component response regulator [Caulobacter crescentus NA1000] gi|13422468|gb|AAK23134.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220963317|gb|ACL94673.1| two-component response regulator [Caulobacter crescentus NA1000] Length = 201 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 34/51 (66%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L+LA +G ++++IA+ L LS TV YL A KL A NR++A Sbjct: 141 LTDREREILRLAEEGRSNKDIADVLDLSPGTVRNYLSEAAQKLGAANRVEA 191 >gi|89896875|ref|YP_520362.1| hypothetical protein DSY4129 [Desulfitobacterium hafniense Y51] gi|89336323|dbj|BAE85918.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 215 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 36/71 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K + +A NLTERE L+ GYT++EI E L +SV TV + K+ R Sbjct: 144 KDNNRSASNLTEREKEVLRYIALGYTNKEIGESLSVSVKTVETHKARIMEKIQCHKRSDL 203 Query: 225 IAKAIRFGYIC 235 + AI GYI Sbjct: 204 VRYAIEQGYIS 214 >gi|296118869|ref|ZP_06837442.1| transcriptional regulator, LuxR family [Corynebacterium ammoniagenes DSM 20306] gi|295967967|gb|EFG81219.1| transcriptional regulator, LuxR family [Corynebacterium ammoniagenes DSM 20306] Length = 294 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 11/104 (10%) Query: 136 SEFLMLANEVIIEA-----HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 S+ MLAN V E+ C Q+++ R + L+ RE L G+T Sbjct: 196 SKLRMLANRVEDESLRKELEALCDQMVSPV------RVKQSTKLSARELDVLSCVALGHT 249 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E AE++G+ TV +YL S KL A R +A+ A R G + Sbjct: 250 NVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 293 >gi|293603128|ref|ZP_06685562.1| autoinducer-binding transcriptional regulator BmaR5 [Achromobacter piechaudii ATCC 43553] gi|292818522|gb|EFF77569.1| autoinducer-binding transcriptional regulator BmaR5 [Achromobacter piechaudii ATCC 43553] Length = 120 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 37/65 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + L++R+ +CL + G TS E + LG+S TVN +L +A KL R A+ A+ Sbjct: 51 ARKALSDRQAACLYWSAAGKTSWETSRILGVSESTVNFHLRNACAKLGVRGRRAAVVSAL 110 Query: 230 RFGYI 234 R G + Sbjct: 111 RLGLL 115 >gi|218892289|ref|YP_002441156.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218772515|emb|CAW28297.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 901 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR QA Sbjct: 832 KPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRTQA 891 Query: 225 IAKA 228 I +A Sbjct: 892 IRRA 895 >gi|163786674|ref|ZP_02181122.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Flavobacteriales bacterium ALC-1] gi|159878534|gb|EDP72590.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Flavobacteriales bacterium ALC-1] Length = 136 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 35/56 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +++ RE LQ +G +++EIAE L LS T+ ++ + VKLDA R QA+ KA Sbjct: 75 DISNREYEVLQKIAEGLSNKEIAESLFLSESTIKTHVSNLLVKLDAKRRTQALKKA 130 >gi|254240101|ref|ZP_04933423.1| hypothetical protein PA2G_00741 [Pseudomonas aeruginosa 2192] gi|126193479|gb|EAZ57542.1| hypothetical protein PA2G_00741 [Pseudomonas aeruginosa 2192] Length = 901 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR QA Sbjct: 832 KPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRTQA 891 Query: 225 IAKA 228 I +A Sbjct: 892 IRRA 895 >gi|15596956|ref|NP_250450.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116049709|ref|YP_791486.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|9947737|gb|AAG05148.1|AE004601_13 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115584930|gb|ABJ10945.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 901 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR QA Sbjct: 832 KPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRTQA 891 Query: 225 IAKA 228 I +A Sbjct: 892 IRRA 895 >gi|330811658|ref|YP_004356120.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379766|gb|AEA71116.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 849 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L G+++++IAE+L +S+HTV + KL R QA+AKA G Sbjct: 788 LSHRELEVLELIAQGHSNQQIAERLFISLHTVKTHARRIHSKLGVQRRTQAVAKAKVMG 846 >gi|317968117|ref|ZP_07969507.1| transcriptional regulator, LuxR family protein [Synechococcus sp. CB0205] Length = 89 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE +QL G T++EI E L +S TV+ ++ + K A NR+ + A+ G Sbjct: 13 DLSERELEIIQLVAQGLTNQEIGENLMISKRTVDNHVSNVFTKTGAKNRVALLNWAMDHG 72 Query: 233 YIC 235 IC Sbjct: 73 KIC 75 >gi|197344641|gb|ACH69671.1| LuxR family transcriptional regulator [uncultured proteobacterium] Length = 277 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 51/208 (24%), Positives = 87/208 (41%), Gaps = 16/208 (7%) Query: 31 RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ 90 R+FA + L PRR + LH+Y + + + L D H + L+P W Sbjct: 37 RHFACCSHVDPLKPPRRAVM---LHSYPKEWAQLFSELELFDIDPVFLHASRSLVPFFWD 93 Query: 91 --------SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 S ++ + +G+ + G +P + P F + V+ SE L A Sbjct: 94 TEAFNDELSPPQQELFNEAGRYGL-TRGYTVPIHSVDAP--RDFRASCSVVPDSESLEPA 150 Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLS 201 ++ A Y T + +K + L+ RE CL+LA G + + LGLS Sbjct: 151 AYQAVQLM-AFYLYDTASKDAQQKDPPPVQQPLSRRERQCLELAAQGKSDWVSSRILGLS 209 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAI 229 TV+ ++ +A +L R+QA+ A+ Sbjct: 210 ERTVHNHVENAKRRLQVATRMQAVMHAL 237 >gi|134097553|ref|YP_001103214.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910176|emb|CAM00289.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 210 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L + + TV ++G+ KL A +R QA+ A G Sbjct: 145 TLTEREAEVLRLMAKGLSNTEIAGELFIGIQTVKTHVGNVLAKLGARDRTQAVVFAYESG 204 Query: 233 YIC 235 ++ Sbjct: 205 FVS 207 >gi|226309987|ref|YP_002769881.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092935|dbj|BAH41377.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 218 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 A +I +FL++ K A+ LT+RE L L G++++EIAE+L +SV TV ++ Sbjct: 131 ATKSLIEEFLQMVKNGEEQAKYDILTDREKEVLVLIAKGFSNKEIAEQLTVSVKTVESHK 190 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 KL R + AI+ G++ Sbjct: 191 AHIMEKLHLRTRPDLVRYAIKKGWL 215 >gi|37523311|ref|NP_926688.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] gi|35214315|dbj|BAC91683.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 221 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT RE L + +G ++ IA +L +S HTV ++GS KL+A +R +A+ +R Sbjct: 157 QPLTPREVEVLSMLAEGLGNKTIARRLQISEHTVKFHIGSIFGKLEATSRTEAVTLGVRR 216 Query: 232 GYI 234 G I Sbjct: 217 GLI 219 >gi|254516347|ref|ZP_05128406.1| putative transcriptional regulator [gamma proteobacterium NOR5-3] gi|219674770|gb|EED31137.1| putative transcriptional regulator [gamma proteobacterium NOR5-3] Length = 934 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+L +++I +L +S HTV +L KL+ NR AIAKA+R G Sbjct: 866 DLTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDAIAKAMRVG 925 Query: 233 YI 234 + Sbjct: 926 LL 927 >gi|297202175|ref|ZP_06919572.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197713613|gb|EDY57647.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 205 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L+ A DG T+ E+A+ L LS TV YL +A KL NR +A+ A Sbjct: 142 ANPLTDREREVLRAAADGSTNAELAQTLHLSQGTVRNYLSTAIQKLAVRNRAEAVRIARE 201 Query: 231 FGYI 234 G++ Sbjct: 202 KGWL 205 >gi|254234854|ref|ZP_04928177.1| hypothetical protein PACG_00728 [Pseudomonas aeruginosa C3719] gi|126166785|gb|EAZ52296.1| hypothetical protein PACG_00728 [Pseudomonas aeruginosa C3719] Length = 901 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR QA Sbjct: 832 KPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRTQA 891 Query: 225 IAKA 228 I +A Sbjct: 892 IRRA 895 >gi|88859107|ref|ZP_01133748.1| putative csg operon transcription regulator (LuxR family) protein [Pseudoalteromonas tunicata D2] gi|88819333|gb|EAR29147.1| putative csg operon transcription regulator (LuxR family) protein [Pseudoalteromonas tunicata D2] Length = 207 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 38/64 (59%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + LT RE + ++L G ++++AEKL +S HTV +L SA K +A NRI+ Sbjct: 132 SMSLEKLTNRERTIIRLVSQGAKNKDVAEKLHISDHTVKTHLYSAFRKTNARNRIELANW 191 Query: 228 AIRF 231 A +F Sbjct: 192 AQKF 195 >gi|107101190|ref|ZP_01365108.1| hypothetical protein PaerPA_01002222 [Pseudomonas aeruginosa PACS2] Length = 856 Score = 45.4 bits (106), Expect = 0.006, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR QA Sbjct: 787 KPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRTQA 846 Query: 225 IAKA 228 I +A Sbjct: 847 IRRA 850 >gi|83854765|ref|ZP_00948295.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] gi|83842608|gb|EAP81775.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] Length = 248 Score = 45.4 bits (106), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 8/113 (7%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V +GFH + +E +++ H A F L ++ R L+ RE Sbjct: 136 VSIGFHPDRPRPTDAE--------VLDLHVASQFAHMRFCALVAGPAAPNRRLSPRELEL 187 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G ++ IA+ +G+S HTV+ + KLD +R +A + + FG I Sbjct: 188 LRWIARGKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRAAVRGLAFGLI 240 >gi|309791797|ref|ZP_07686284.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308226119|gb|EFO79860.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 209 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 37/57 (64%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L+L +G + EIAE+L +S+ TV ++ + +KL NR+ A+ KAI+ Sbjct: 149 LTERERDVLKLLVEGLNNAEIAERLVVSLSTVKYHISNILMKLGVDNRVAAVTKAIQ 205 >gi|284028619|ref|YP_003378550.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283807912|gb|ADB29751.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 218 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 TD L K+R S LT+RE L G G ++ +I L +S TV A++ VKLD Sbjct: 143 TDRQRLAKQRLS---RLTDREVEVLVAVGRGLSNADIGRSLFMSEATVKAHVSRVLVKLD 199 Query: 218 AVNRIQ 223 A NR+Q Sbjct: 200 ATNRVQ 205 >gi|307150964|ref|YP_003886348.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981192|gb|ADN13073.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 90 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 38/62 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE ++L +G T+ EIA +L +S TV+ ++ + K NR++ + A+++G Sbjct: 12 LSERELQIIELVANGLTNLEIANRLEISKRTVDNHISNILTKTKTDNRVELVRWALQWGK 71 Query: 234 IC 235 +C Sbjct: 72 VC 73 >gi|152986923|ref|YP_001348902.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150962081|gb|ABR84106.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 924 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR QA Sbjct: 855 KPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRTQA 914 Query: 225 IAKA 228 I +A Sbjct: 915 IRRA 918 >gi|296389855|ref|ZP_06879330.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313110448|ref|ZP_07796333.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310882835|gb|EFQ41429.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 856 Score = 45.4 bits (106), Expect = 0.007, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR QA Sbjct: 787 KPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRTQA 846 Query: 225 IAKA 228 I +A Sbjct: 847 IRRA 850 >gi|13473938|ref|NP_105506.1| two-component system response regulator [Mesorhizobium loti MAFF303099] gi|14024689|dbj|BAB51292.1| two-component system response regulator [Mesorhizobium loti MAFF303099] Length = 215 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 V+ DFL+ + +RNLT RE ++ +G +++ IA +LG+SV TV+++ +A K Sbjct: 137 VLQDFLD--GQSDVTSRNLTNREREVVRFVSEGESNKRIAARLGVSVKTVDSHRTTAMRK 194 Query: 216 LDAVNRIQAIAKAIR 230 L N + + AIR Sbjct: 195 LGLRNAVDLVRYAIR 209 >gi|187928756|ref|YP_001899243.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187930011|ref|YP_001900498.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187725646|gb|ACD26811.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|187726901|gb|ACD28066.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] Length = 201 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L + G TS EIA LGLS TV+ ++ +A KL RI+A+ +A G Sbjct: 138 QLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHMDNAREKLGVATRIEAVVRASSSG 197 Query: 233 YI 234 I Sbjct: 198 II 199 >gi|309779188|ref|ZP_07673951.1| DNA-binding response regulator, LuxR family [Ralstonia sp. 5_7_47FAA] gi|308921992|gb|EFP67626.1| DNA-binding response regulator, LuxR family [Ralstonia sp. 5_7_47FAA] Length = 201 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L + G TS EIA LGLS TV+ ++ +A KL RI+A+ +A G Sbjct: 138 QLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMDNAREKLGVATRIEAVVRASSSG 197 Query: 233 YI 234 I Sbjct: 198 II 199 >gi|223937482|ref|ZP_03629386.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223893833|gb|EEF60290.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 207 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ F E+ + L++RE LQ GYT++EIAE+L +SV+TV +L Sbjct: 133 RVVQSFREV-PREPVKNEKLSQREEEILQQLSKGYTTKEIAERLSVSVNTVRTHLQHIYE 191 Query: 215 KLDAVNRIQAIAK 227 KL +R +A+ K Sbjct: 192 KLHVRSRTEAVVK 204 >gi|29830688|ref|NP_825322.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607800|dbj|BAC71857.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 200 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ A DG EIAE+ L+ TV YL SA KL A NR A+ A G+ Sbjct: 140 LTVREAEVLEFAADGAPVAEIAERAALAEGTVRNYLSSAVSKLGAENRHTAVRLARERGW 199 Query: 234 I 234 + Sbjct: 200 V 200 >gi|320011566|gb|ADW06416.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 214 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 152 TLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 211 >gi|254254249|ref|ZP_04947566.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa AUO158] gi|12620909|gb|AAG61134.1|AF330023_1 AHL receptor [Burkholderia cepacia] gi|124898894|gb|EAY70737.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa AUO158] Length = 239 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K A+ LT RE L +G T+ EI + L +S TVN ++ + KL A N++QA Sbjct: 167 KLSPEASVTLTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQA 226 Query: 225 IAKAIRFGYI 234 + KAI G I Sbjct: 227 VVKAISAGLI 236 >gi|284043982|ref|YP_003394322.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948203|gb|ADB50947.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 215 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 3/67 (4%) Query: 167 RSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R +AAR L+ RE L+L G + IA++L +S HTV ++ S KL NRIQ Sbjct: 145 RQTAARARAQLSPREQEVLRLVAGGMDNAAIAQELFISPHTVKNHISSILTKLHVANRIQ 204 Query: 224 AIAKAIR 230 A +A+R Sbjct: 205 AAVRAVR 211 >gi|312115398|ref|YP_004012994.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii ATCC 17100] gi|311220527|gb|ADP71895.1| transcriptional regulator, LuxR family [Rhodomicrobium vannielii ATCC 17100] Length = 251 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 76/190 (40%), Gaps = 24/190 (12%) Query: 68 LIETYGDDFLFHFN---------------SGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112 L+ Y DD++ H+ S P W S+ + Q+ V E Sbjct: 57 LVCNYPDDWMEHYRLNQYEKKDPVPQYGISASRPFTWASVVAQRKWHPD-QMKVMHEAEE 115 Query: 113 LPFA-GIAFPV-RLGFHKNGYVIFTSEFLMLANEVII-EAHGACYQVITDFLELFKKRSS 169 GIA PV + G+ I +S + + ++ + Q F EL K + Sbjct: 116 ARLCDGIAVPVCGVNGELAGFGIASSHGGVSPDRTLLHKVQALAIQFHLAFTELEKIETP 175 Query: 170 AARNL-----TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 NL TERE + A +G + IAE LG+S TV ++ + KL+A R A Sbjct: 176 LTENLAEVYLTEREKEIMSWAAEGKSDSVIAEILGVSHSTVRFHMNNVFKKLNANERTLA 235 Query: 225 IAKAIRFGYI 234 KAIR G I Sbjct: 236 TVKAIRHGLI 245 >gi|156744143|ref|YP_001434272.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235471|gb|ABU60254.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 213 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L+L G ++EIA +L + TV ++ + KLD +R QA A+R G Sbjct: 146 KLTERETDVLRLLALGRANKEIARELNIGEKTVKTHVSAILRKLDVPSRTQAALYAVRIG 205 Query: 233 YIC 235 + Sbjct: 206 LVS 208 >gi|126433549|ref|YP_001069240.1| response regulator receiver protein [Mycobacterium sp. JLS] gi|126233349|gb|ABN96749.1| response regulator receiver protein [Mycobacterium sp. JLS] Length = 207 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L +G+ + EIA++L S TV L T +L NR A+A A+R G Sbjct: 147 LTDREIKVLRLIAEGHDTSEIAQQLCYSQRTVKNVLHDVTTRLQLRNRSHAVAYAVREGL 206 Query: 234 I 234 I Sbjct: 207 I 207 >gi|307328219|ref|ZP_07607397.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886053|gb|EFN17061.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 229 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 10/114 (8%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----RSSAARN-----LTERET 179 GY++ ++ +A+ + A G + +E+ + RS+A +N +T RE Sbjct: 106 GYLLKSASGDEIASAIRSAAEGETLIPASTLVEVLARHREDARSTAEQNERLDSMTPREQ 165 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G + +AE+L +S TV ++ KLDA ++++A+A+A FG+ Sbjct: 166 EILTLMSQGLDNRAVAERLSISYATVRTHVRRILEKLDARSQLEAVARAAEFGF 219 >gi|254390702|ref|ZP_05005915.1| hypothetical protein SSCG_02977 [Streptomyces clavuligerus ATCC 27064] gi|197704402|gb|EDY50214.1| hypothetical protein SSCG_02977 [Streptomyces clavuligerus ATCC 27064] Length = 247 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T+RE + L L G ++++IA LG+S+H V ++ + +KLD+ NR + K + G Sbjct: 181 RVTQRERAVLSLLAQGLSNQQIARALGISIHGVKRHVSNLLIKLDSSNRTEVALKVTQLG 240 Query: 233 YI 234 + Sbjct: 241 LL 242 >gi|163839607|ref|YP_001624012.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162953083|gb|ABY22598.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 219 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 165 KKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + RS+A + NLT+RE L L G G +++EIA L ++ TV ++ KLD + Sbjct: 142 RPRSAANKTRLNNLTDREREVLTLVGRGLSNQEIAAALFIAEQTVKTHVSKVLTKLDLRD 201 Query: 221 RIQAIAKAIRFGYI 234 R+QA+ A G + Sbjct: 202 RVQAVVLAYDTGLV 215 >gi|21222474|ref|NP_628253.1| LuxR family two component system response regulator [Streptomyces coelicolor A3(2)] gi|289770352|ref|ZP_06529730.1| luxR family two component system response regulator [Streptomyces lividans TK24] gi|5918474|emb|CAB56352.1| luxR family two component system response regulator [Streptomyces coelicolor A3(2)] gi|289700551|gb|EFD67980.1| luxR family two component system response regulator [Streptomyces lividans TK24] Length = 200 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ A DG EIAE+ L+ TV YL SA KL A NR A+ A G+ Sbjct: 140 LTAREAEVLEHAADGAPVSEIAERAALAEGTVRNYLSSAASKLGAENRHAAVRLARERGW 199 Query: 234 I 234 + Sbjct: 200 V 200 >gi|15924874|ref|NP_372408.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15927458|ref|NP_374991.1| two-component response regulator [Staphylococcus aureus subsp. aureus N315] gi|21283553|ref|NP_646641.1| two-component response regulator [Staphylococcus aureus subsp. aureus MW2] gi|49484125|ref|YP_041349.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49486702|ref|YP_043923.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|148268356|ref|YP_001247299.1| two component LuxR family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394418|ref|YP_001317093.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156980200|ref|YP_001442459.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|253314946|ref|ZP_04838159.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253729642|ref|ZP_04863807.1| two-component response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255006672|ref|ZP_05145273.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257426016|ref|ZP_05602438.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257428689|ref|ZP_05605084.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257431299|ref|ZP_05607675.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257434017|ref|ZP_05610368.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436921|ref|ZP_05612963.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257793762|ref|ZP_05642741.1| two-component system response regulator [Staphylococcus aureus A9781] gi|258408904|ref|ZP_05681186.1| two-component system response regulator [Staphylococcus aureus A9763] gi|258420992|ref|ZP_05683923.1| two-component system response regulator [Staphylococcus aureus A9719] gi|258422961|ref|ZP_05685860.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|258430036|ref|ZP_05688406.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|258443446|ref|ZP_05691788.1| two-component system response regulator [Staphylococcus aureus A8115] gi|258445304|ref|ZP_05693495.1| two-component system response regulator [Staphylococcus aureus A6300] gi|258447868|ref|ZP_05696002.1| response regulator protein vraR [Staphylococcus aureus A6224] gi|258453301|ref|ZP_05701286.1| two-component system response regulator [Staphylococcus aureus A5937] gi|269203536|ref|YP_003282805.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus ED98] gi|282894549|ref|ZP_06302777.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8117] gi|282904515|ref|ZP_06312400.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus C160] gi|282906287|ref|ZP_06314139.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282909203|ref|ZP_06317019.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911509|ref|ZP_06319309.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282914681|ref|ZP_06322466.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M899] gi|282917229|ref|ZP_06324984.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus D139] gi|282919718|ref|ZP_06327450.1| two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C427] gi|282925122|ref|ZP_06332782.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C101] gi|282928056|ref|ZP_06335663.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A10102] gi|283771033|ref|ZP_06343924.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus H19] gi|283958645|ref|ZP_06376091.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus A017934/97] gi|293507758|ref|ZP_06667600.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus 58-424] gi|293510776|ref|ZP_06669478.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus M809] gi|293539315|ref|ZP_06671994.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M1015] gi|295407262|ref|ZP_06817061.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8819] gi|295428465|ref|ZP_06821092.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275883|ref|ZP_06858390.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MR1] gi|297208909|ref|ZP_06925314.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246211|ref|ZP_06930062.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8796] gi|297590064|ref|ZP_06948704.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300913033|ref|ZP_07130471.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|81696298|sp|Q6G850|VRAR_STAAS RecName: Full=Response regulator protein vraR gi|81696461|sp|Q6GFH3|VRAR_STAAR RecName: Full=Response regulator protein vraR gi|81704309|sp|Q7A0I0|VRAR_STAAW RecName: Full=Response regulator protein vraR gi|81704831|sp|Q7A2Q1|VRAR_STAAM RecName: Full=Response regulator protein vraR gi|81705432|sp|Q7A4R9|VRAR_STAAN RecName: Full=Response regulator protein vraR gi|90116383|sp|P0C0Z1|VRAR_STAA1 RecName: Full=Response regulator protein vraR gi|9501772|dbj|BAB03325.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|13701677|dbj|BAB42970.1| two-component response regulator [Staphylococcus aureus subsp. aureus N315] gi|14247656|dbj|BAB58046.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|16151628|dbj|BAB69827.1| response regulator [Staphylococcus aureus] gi|21204994|dbj|BAB95689.1| two-component response regulator [Staphylococcus aureus subsp. aureus MW2] gi|49242254|emb|CAG40961.1| putative response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49245145|emb|CAG43611.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|147741425|gb|ABQ49723.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JH9] gi|149946870|gb|ABR52806.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156722335|dbj|BAF78752.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|253726638|gb|EES95367.1| two-component response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257271159|gb|EEV03316.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257274333|gb|EEV05845.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257277948|gb|EEV08604.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257280943|gb|EEV11087.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257283710|gb|EEV13835.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257787734|gb|EEV26074.1| two-component system response regulator [Staphylococcus aureus A9781] gi|257840351|gb|EEV64813.1| two-component system response regulator [Staphylococcus aureus A9763] gi|257842940|gb|EEV67358.1| two-component system response regulator [Staphylococcus aureus A9719] gi|257846748|gb|EEV70763.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|257849630|gb|EEV73598.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|257851331|gb|EEV75271.1| two-component system response regulator [Staphylococcus aureus A8115] gi|257855822|gb|EEV78746.1| two-component system response regulator [Staphylococcus aureus A6300] gi|257858800|gb|EEV81669.1| response regulator protein vraR [Staphylococcus aureus A6224] gi|257864509|gb|EEV87252.1| two-component system response regulator [Staphylococcus aureus A5937] gi|262075826|gb|ACY11799.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus ED98] gi|282313080|gb|EFB43478.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C101] gi|282316356|gb|EFB46733.1| two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C427] gi|282318856|gb|EFB49211.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus D139] gi|282321395|gb|EFB51721.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M899] gi|282324518|gb|EFB54830.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282326771|gb|EFB57068.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330484|gb|EFB60001.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282590120|gb|EFB95201.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A10102] gi|282595071|gb|EFC00038.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus C160] gi|282763036|gb|EFC03168.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8117] gi|283459627|gb|EFC06718.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus H19] gi|283471154|emb|CAQ50365.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus ST398] gi|283789685|gb|EFC28507.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus A017934/97] gi|285817564|gb|ADC38051.1| Two component transcriptional regulator VraR, LuxR family [Staphylococcus aureus 04-02981] gi|290919850|gb|EFD96919.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M1015] gi|291094821|gb|EFE25089.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus 58-424] gi|291466407|gb|EFF08931.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus M809] gi|294967837|gb|EFG43867.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8819] gi|295127447|gb|EFG57086.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886470|gb|EFH25398.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176918|gb|EFH36175.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8796] gi|297577192|gb|EFH95906.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300885811|gb|EFK81018.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333549|gb|ADL23742.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JKD6159] gi|312437651|gb|ADQ76722.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|312830256|emb|CBX35098.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129309|gb|EFT85303.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS03] gi|315193411|gb|EFU23808.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS00] gi|329724817|gb|EGG61321.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus 21172] Length = 209 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLA 185 + Y++ T+ +A+ V + G +V+ KKR+ LTERE L L Sbjct: 100 DSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLI 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 160 AKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|315654640|ref|ZP_07907546.1| two component system response regulator [Mobiluncus curtisii ATCC 51333] gi|315491104|gb|EFU80723.1| two component system response regulator [Mobiluncus curtisii ATCC 51333] Length = 254 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 39/63 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RET L L G T++EIA +L +S+ TV ++G+ K+ A +R+QA+ A G Sbjct: 191 SLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARDRVQAVIFAYENG 250 Query: 233 YIC 235 + Sbjct: 251 LVS 253 >gi|315123291|ref|YP_004065297.1| two-component system regulatory protein [Pseudoalteromonas sp. SM9913] gi|315017051|gb|ADT70388.1| two-component system regulatory protein [Pseudoalteromonas sp. SM9913] Length = 204 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 4/113 (3%) Query: 124 LGFHKNGYVIFTSEF--LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 L GYV+ E L+ A + ++ +TDFL KK+ S LT +E + Sbjct: 94 LNLGARGYVLKNIELEELISAIKQVVAGERVLQSAVTDFL--LKKQLSPQLCLTGKEQTV 151 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ G +++ IA+KL S T+ ++ KL+ +R QA+ KAI I Sbjct: 152 LQCLSLGMSNKVIAKKLDNSEGTIRNHVSQILAKLEVKDRTQAVIKAINHNLI 204 >gi|224369897|ref|YP_002604061.1| two-component response regulator protein [Desulfobacterium autotrophicum HRM2] gi|223692614|gb|ACN15897.1| two-component response regulator protein [Desulfobacterium autotrophicum HRM2] Length = 218 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 12/111 (10%) Query: 130 GYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFK-----KRSSAARNLTERETSC 181 G+++ TS L +++ A G C + + +E + K + LT RE Sbjct: 104 GFLLKTSSLEDLHTAILMVASGKSYLCPEALNIMMEDIQTPGDTKLLCPLQRLTLRERGV 163 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +QL +GYTS+EI+EKL +S TV+ + + KL +I IA RF Sbjct: 164 IQLIAEGYTSQEISEKLNISKRTVDVHRTNTMNKL----KIHTIAGLTRFA 210 >gi|212637151|ref|YP_002313676.1| regulatory protein LuxR [Shewanella piezotolerans WP3] gi|212558635|gb|ACJ31089.1| Regulatory protein, LuxR [Shewanella piezotolerans WP3] Length = 223 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 41/71 (57%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L+L + S + + LT RE + +QL G ++EIAE L +S HTV A++ S K A N Sbjct: 143 LQLSTEGSESFQQLTRREKTIIQLVSSGARNKEIAEGLCISEHTVKAHISSIFRKTHARN 202 Query: 221 RIQAIAKAIRF 231 R++ + A F Sbjct: 203 RVELLRWAEPF 213 >gi|49478066|ref|YP_037282.1| salavaricin two-component response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49329622|gb|AAT60268.1| salavaricin two-component response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 192 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F + LT E LQL DGY +EIA L S T++ ++ KL+ + ++ Sbjct: 117 FPTSTETIEELTHTEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLE 176 Query: 224 AIAKAIRFGYI 234 A+ K I+ GYI Sbjct: 177 AVTKGIKLGYI 187 >gi|126730312|ref|ZP_01746123.1| autoinducer-binding transcriptional regulator LuxR [Sagittula stellata E-37] gi|126709045|gb|EBA08100.1| autoinducer-binding transcriptional regulator LuxR [Sagittula stellata E-37] Length = 226 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + A+ L+ RE + L GY+ + A+ L +S HT+ Y+ SA KL A+N A+ Sbjct: 156 RTPEPAQPLSPREIEAMTLLAIGYSRAQAADTLSISEHTLRVYVESARHKLGAMNTTHAV 215 Query: 226 AKAIRFGYI 234 A+A+ G I Sbjct: 216 AQALSRGVI 224 >gi|54024795|ref|YP_119037.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54016303|dbj|BAD57673.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 350 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/48 (45%), Positives = 31/48 (64%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LTERE L+L DG T +I E+L LS HTV+ ++ +A +KL +R Sbjct: 293 LTEREREILRLVADGLTDAQIGERLTLSPHTVHRHIANARIKLGVRSR 340 >gi|301054683|ref|YP_003792894.1| salavaricin two-component response regulator [Bacillus anthracis CI] gi|300376852|gb|ADK05756.1| salavaricin two-component response regulator [Bacillus cereus biovar anthracis str. CI] Length = 191 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F + LT E LQL DGY +EIA L S T++ ++ KL+ + ++ Sbjct: 117 FPTSTETIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLE 176 Query: 224 AIAKAIRFGYI 234 A+ K I+ GYI Sbjct: 177 AVTKGIKLGYI 187 >gi|294498256|ref|YP_003561956.1| two-component response regulator DesR [Bacillus megaterium QM B1551] gi|295703606|ref|YP_003596681.1| two-component response regulator DesR [Bacillus megaterium DSM 319] gi|294348193|gb|ADE68522.1| two-component response regulator DesR [Bacillus megaterium QM B1551] gi|294801265|gb|ADF38331.1| two-component response regulator DesR [Bacillus megaterium DSM 319] Length = 200 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + LT RE L L DG ++EIA++L + TV Y+ + KL+ NRI+AI + Sbjct: 133 SESTSPLTAREKEVLALVADGKNTKEIADELSIKTGTVRNYISTILDKLEVKNRIEAITR 192 Query: 228 AIRFGY 233 G+ Sbjct: 193 FKEKGW 198 >gi|116073216|ref|ZP_01470478.1| transcriptional regulator, LuxR family protein [Synechococcus sp. RS9916] gi|116068521|gb|EAU74273.1| transcriptional regulator, LuxR family protein [Synechococcus sp. RS9916] Length = 227 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 38/60 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L++ G +++EI+E L +S TV +++ + K+ +R QA+ KAIR G Sbjct: 167 DLTDREMEVLKVLSSGMSNKEISESLCISSETVKSHVSTIIGKMGVKDRTQAVIKAIRAG 226 >gi|315647681|ref|ZP_07900782.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315276327|gb|EFU39670.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 201 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L +G T+ EI++ L L+ TV YL SA KL+A +R QA A A G+ Sbjct: 141 LSEREIEMLRLTKEGMTTGEISKALFLTTGTVRNYLSSAIQKLEADSRQQAAAIAEDKGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|86356800|ref|YP_468692.1| transcriptional regulator protein [Rhizobium etli CFN 42] gi|86280902|gb|ABC89965.1| probable transcriptional regulator protein [Rhizobium etli CFN 42] Length = 240 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+ E CL+L G S EIA+ L LS VN +GS KL R QA+ A+R Sbjct: 178 FTQSELDCLRLTAGGRKSSEIAKLLDLSESAVNNQIGSVIRKLGCTTRTQAVVSALRLNI 237 Query: 234 I 234 I Sbjct: 238 I 238 >gi|219667288|ref|YP_002457723.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537548|gb|ACL19287.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 215 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 36/71 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K + +A NLTERE L+ GYT++EI E L +SV TV + K+ R Sbjct: 144 KDNNRSASNLTEREKEVLRYIALGYTNKEIGESLSVSVKTVETHKARIMEKIQCHKRSDL 203 Query: 225 IAKAIRFGYIC 235 + AI GYI Sbjct: 204 VRYAIEQGYIS 214 >gi|228915760|ref|ZP_04079341.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843862|gb|EEM88930.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 191 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F + LT E LQL DGY +EIA L S T++ ++ KL+ + ++ Sbjct: 117 FPTSTETIEELTHTEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLE 176 Query: 224 AIAKAIRFGYI 234 A+ K I+ GYI Sbjct: 177 AVTKGIKLGYI 187 >gi|148976347|ref|ZP_01813053.1| transcriptional regulator, LuxR family protein [Vibrionales bacterium SWAT-3] gi|145964170|gb|EDK29426.1| transcriptional regulator, LuxR family protein [Vibrionales bacterium SWAT-3] Length = 178 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 46/76 (60%), Gaps = 5/76 (6%) Query: 155 QVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++I ++ +++R A + LT+RE ++L GDG ++ +IA+ L +S +TV A+L Sbjct: 89 KLIYQYISFYRERQCAKTSPYYLKLTKREQQIIKLLGDGASNTQIADTLYVSENTVKAHL 148 Query: 210 GSATVKLDAVNRIQAI 225 + K+ NR+QA+ Sbjct: 149 HNTFKKIKVKNRLQAL 164 >gi|290962908|ref|YP_003494090.1| transcriptional regulator [Streptomyces scabiei 87.22] gi|260652434|emb|CBG75567.1| Putative transcriptional regulator [Streptomyces scabiei 87.22] Length = 289 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L G T+ ++AE+LGLS TV +YL SA +L R++ +A A R G Sbjct: 228 LSSRELDVLSCVALGRTNADVAEELGLSAETVKSYLRSAMRRLGCHTRMETVATARRLGL 287 Query: 234 I 234 + Sbjct: 288 L 288 >gi|282861875|ref|ZP_06270938.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562900|gb|EFB68439.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 214 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 152 TLTEREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 211 >gi|148654958|ref|YP_001275163.1| response regulator receiver protein [Roseiflexus sp. RS-1] gi|148567068|gb|ABQ89213.1| response regulator receiver protein [Roseiflexus sp. RS-1] Length = 204 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++++IA+KL +S HTV +L S KL +R +A+ + R G Sbjct: 142 LTARERDVLELVSQGLSNKQIAQKLQISEHTVKFHLSSLFAKLGVSSRTEAVNRGARQGI 201 Query: 234 IC 235 I Sbjct: 202 IT 203 >gi|86361169|ref|YP_473056.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86285271|gb|ABC94329.1| transcriptional regulator (activator) protein, LuxR family [Rhizobium etli CFN 42] Length = 241 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 34/56 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +L+ RE CL++ G+ +++I+ +L +S+ V YL SA KL +A+AKA Sbjct: 180 HLSRRELQCLEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKA 235 >gi|51894231|ref|YP_076922.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857920|dbj|BAD42078.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 211 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L ++ + ++L GYT+ EIAE++ LS TV YL A ++ NR++A A + G+ Sbjct: 151 LNRQQLAIIRLVAQGYTNREIAERMFLSEKTVKGYLAEAMRRMGVKNRVEAAMVASKNGW 210 Query: 234 I 234 I Sbjct: 211 I 211 >gi|294812712|ref|ZP_06771355.1| Response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325311|gb|EFG06954.1| Response regulator [Streptomyces clavuligerus ATCC 27064] Length = 240 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T+RE + L L G ++++IA LG+S+H V ++ + +KLD+ NR + K + G Sbjct: 175 VTQRERAVLSLLAQGLSNQQIARALGISIHGVKRHVSNLLIKLDSSNRTEVALKVTQLGL 234 Query: 234 I 234 + Sbjct: 235 L 235 >gi|284042088|ref|YP_003392428.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946309|gb|ADB49053.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 196 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 35/68 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + L+ERE L L +G T+ +I L LS HT+ + S KL A NR +A+ Sbjct: 128 RPPSPTRLSERERQVLTLVSEGSTNAQIGRSLCLSPHTIKQHTSSVYRKLHARNRAEAVT 187 Query: 227 KAIRFGYI 234 +A G + Sbjct: 188 RARELGLL 195 >gi|218677689|ref|ZP_03525586.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 240 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T E CL+L G EIA+ L L+ + VN ++GSA KL R QA+ A+R Sbjct: 178 FTPGELDCLRLTAGGRKGSEIAKLLDLTENVVNNHIGSAIKKLGCTTRTQAVVSALRLNI 237 Query: 234 I 234 I Sbjct: 238 I 238 >gi|322434963|ref|YP_004217175.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321162690|gb|ADW68395.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 209 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ RE LQ G +++ +A L +S HTV +L S KLDA +R A+ AIR GY Sbjct: 147 VSPRELEVLQEVSRGKSNKIVAGDLNISEHTVKNHLKSILSKLDASDRTDAVVIAIRRGY 206 Query: 234 I 234 I Sbjct: 207 I 207 >gi|241518233|ref|YP_002978861.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862646|gb|ACS60310.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 236 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++RE CL+ A +G IA+ GL+ HTV L KL + QA+A A RFG Sbjct: 176 FSDREALCLRWAAEGLPMHSIADVTGLTYHTVRWDLDRVKAKLGVYTQKQAVAVASRFGL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|118478475|ref|YP_895626.1| salavaricin two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196043050|ref|ZP_03110289.1| salavaricin two-component response regulator [Bacillus cereus 03BB108] gi|225865118|ref|YP_002750496.1| salavaricin two-component response regulator [Bacillus cereus 03BB102] gi|118417700|gb|ABK86119.1| salavaricin two-component response regulator [Bacillus thuringiensis str. Al Hakam] gi|196026534|gb|EDX65202.1| salavaricin two-component response regulator [Bacillus cereus 03BB108] gi|225790282|gb|ACO30499.1| salavaricin two-component response regulator [Bacillus cereus 03BB102] Length = 204 Score = 45.1 bits (105), Expect = 0.007, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F + LT E LQL DGY +EIA L S T++ ++ KL+ + ++ Sbjct: 130 FPTSTEIIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLE 189 Query: 224 AIAKAIRFGYI 234 A+ K I+ GYI Sbjct: 190 AVTKGIKLGYI 200 >gi|291009185|ref|ZP_06567158.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 227 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L + + TV ++G+ KL A +R QA+ A G Sbjct: 162 TLTEREAEVLRLMAKGLSNTEIAGELFIGIQTVKTHVGNVLAKLGARDRTQAVVFAYESG 221 Query: 233 YIC 235 ++ Sbjct: 222 FVS 224 >gi|256786460|ref|ZP_05524891.1| LuxR family two component system response regulator [Streptomyces lividans TK24] Length = 204 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ A DG EIAE+ L+ TV YL SA KL A NR A+ A G+ Sbjct: 144 LTAREAEVLEHAADGAPVSEIAERAALAEGTVRNYLSSAASKLGAENRHAAVRLARERGW 203 Query: 234 I 234 + Sbjct: 204 V 204 >gi|117926978|ref|YP_867595.1| LuxR family transcriptional regulator [Magnetococcus sp. MC-1] gi|117610734|gb|ABK46189.1| transcriptional regulator, LuxR family [Magnetococcus sp. MC-1] Length = 220 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 KRS +T RE L+L G +++ IA +LG+S+HTV A+ + K+DA NR+ Sbjct: 148 LPKRSHWPNGITSREAEILRLITSGCSNKRIAYELGISLHTVKAHTYNLYRKIDASNRMD 207 Query: 224 A 224 A Sbjct: 208 A 208 >gi|229171060|ref|ZP_04298658.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3] gi|228612390|gb|EEK69614.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3] Length = 213 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 10/114 (8%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA-------RNLTERE 178 +GY++ E +A ++ G + +E KK A + LTERE Sbjct: 95 SGYLLKDMETDAIAQAILTVHSGGVVLPQDITAQIIEELKKTKVAVCNPPEQLKQLTERE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 155 VDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 208 >gi|206562058|ref|YP_002232821.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] gi|198038098|emb|CAR54046.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] Length = 237 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L DG T+ EI G++ TV +L +A VKLDA+N+ A KA G Sbjct: 175 GLTLREREVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLG 234 Query: 233 YI 234 + Sbjct: 235 LL 236 >gi|28453859|gb|AAO43546.1| transcriptional activator CinR [Rhizobium etli CFN 42] Length = 246 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 30/62 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L RE CL A G S++I + LGLS HT YL SA KL AIA A+ Sbjct: 178 LGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKSARYKLGCPTLSAAIAHAVHLNL 237 Query: 234 IC 235 I Sbjct: 238 IT 239 >gi|107027317|ref|YP_624828.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691286|ref|YP_836819.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170736675|ref|YP_001777935.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105896691|gb|ABF79855.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116649286|gb|ABK09926.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] gi|169818863|gb|ACA93445.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 237 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L DG T+ EI G++ TV +L +A VKLDA+N+ A KA G Sbjct: 175 GLTLREREVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLG 234 Query: 233 YI 234 + Sbjct: 235 LL 236 >gi|294631223|ref|ZP_06709783.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292834556|gb|EFF92905.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 204 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L+ A DG T+ E+A L LS TV YL +A KL NR +A+ A Sbjct: 141 ANPLTDREREVLRAAADGSTNAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRTARE 200 Query: 231 FGYI 234 G++ Sbjct: 201 KGWL 204 >gi|291545304|emb|CBL18412.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Ruminococcus sp. SR1/5] Length = 206 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 155 QVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++I+ EL + A+RN++ERE ++L +GY+++EIA +L LS TV YL S Sbjct: 126 EIISKIPELLQSSDGFDYASRNISERELDIIRLIANGYSNKEIAAELFLSEGTVRNYLSS 185 Query: 212 ATVKLDAVNRIQA 224 KL +R Q Sbjct: 186 ILDKLQLRDRTQV 198 >gi|83941288|ref|ZP_00953750.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36] gi|83847108|gb|EAP84983.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36] Length = 244 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 8/113 (7%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V +GFH + +E +++ H A F L ++ R L+ RE Sbjct: 132 VSIGFHHDRPRPSDAE--------VLDLHVASQFAHMRFCALVAGPAAPNRRLSPRELEL 183 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G ++ IA+ +G+S HTV+ + KLD +R +A + + FG I Sbjct: 184 LRWIARGKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRAAVRGVAFGLI 236 >gi|262225461|ref|YP_003280952.1| pCQ3_103 [Streptomyces sp. W9] gi|261597637|gb|ACX85604.1| pCQ3_103 [Streptomyces sp. W9] Length = 113 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Query: 160 FLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L++ + + R +T R+ L+L +G T+ IA +LG+S +TV + S KL Sbjct: 15 HLKVLPRHPADPRYTVTRRQLDILRLIANGNTTTAIARRLGISYNTVTKQVASIHRKLRV 74 Query: 219 VNRIQAIAKAIRFGYI 234 +R QA+A A+R G + Sbjct: 75 SDRAQAVAVALRMGLL 90 >gi|72383356|ref|YP_292711.1| LuxR transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003206|gb|AAZ59008.1| regulatory protein, LuxR [Prochlorococcus marinus str. NATL2A] Length = 91 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 39/68 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S+ L+ RE + L DG T++EIAEKL +S TV+ ++ + K + NR+ + Sbjct: 8 NSSHMGLSAREMEIIGLVADGLTNQEIAEKLTISKRTVDNHVSNMFTKTGSKNRVALLNW 67 Query: 228 AIRFGYIC 235 A+ G IC Sbjct: 68 AMDHGKIC 75 >gi|326326038|ref|YP_004250847.1| putative transcriptional activator protein solR-LuxR [Vibrio nigripulchritudo] gi|323669089|emb|CBJ93133.1| Putative transcriptional activator protein solR-LuxR [Vibrio nigripulchritudo] Length = 232 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ + +G T+ E + L +S TV ++ +A KL+ N+ A+ KA+ G Sbjct: 171 LTPREIEILKWSAEGKTASETSMILSISERTVTFHITNAVKKLNTCNKTSAVIKAVTLGL 230 Query: 234 IC 235 +C Sbjct: 231 VC 232 >gi|311896158|dbj|BAJ28566.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 202 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA +G EIA +L LS TV YL + KL+A NR+ AI A G+ Sbjct: 141 LTGREIEVLRLAAEGAEVAEIASRLFLSSGTVRNYLTTVVSKLNARNRVDAIRVAKAAGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|267027596|gb|ACY78510.1| LuxR type regulator [Corynebacterium stationis] Length = 279 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 11/104 (10%) Query: 136 SEFLMLANEVIIEA-----HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 S+ MLAN V E+ C Q+++ R + L+ RE L G+T Sbjct: 181 SKLRMLANRVEDESLRKELEALCDQMVSPV------RVKQSTKLSARELDVLSCVALGHT 234 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E AE++G+ TV +YL S KL A R +A+ A R G + Sbjct: 235 NVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 278 >gi|160900247|ref|YP_001565829.1| ATP-dependent transcription regulator LuxR [Delftia acidovorans SPH-1] gi|160365831|gb|ABX37444.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Delftia acidovorans SPH-1] Length = 924 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ A LT +E L+L GY++ +AEKL +S TV +L S +KL A +R QA+A Sbjct: 857 TALAEPLTRKELRVLELLASGYSNAAMAEKLFVSDSTVRTHLRSINLKLGARSRTQAVAL 916 Query: 228 A 228 A Sbjct: 917 A 917 >gi|57652103|ref|YP_186767.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus COL] gi|82751537|ref|YP_417278.1| two-component response regulator [Staphylococcus aureus RF122] gi|87161005|ref|YP_494517.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195780|ref|YP_500589.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222034|ref|YP_001332856.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus str. Newman] gi|161510103|ref|YP_001575762.1| response regulator VraR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141457|ref|ZP_03565950.1| response regulator VraR [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253734427|ref|ZP_04868592.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|258451050|ref|ZP_05699086.1| two-component system response regulator [Staphylococcus aureus A5948] gi|262050230|ref|ZP_06023081.1| two-component response regulator [Staphylococcus aureus D30] gi|262052884|ref|ZP_06025068.1| two-component response regulator [Staphylococcus aureus 930918-3] gi|282923220|ref|ZP_06330901.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9765] gi|284024930|ref|ZP_06379328.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 132] gi|294849429|ref|ZP_06790171.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9754] gi|304379068|ref|ZP_07361815.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694172|sp|Q5HEP0|VRAR_STAAC RecName: Full=Response regulator protein vraR gi|57286289|gb|AAW38383.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus COL] gi|82657068|emb|CAI81505.1| two-component response regulator [Staphylococcus aureus RF122] gi|87126979|gb|ABD21493.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203338|gb|ABD31148.1| DNA-binding response regulator VraR, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374834|dbj|BAF68094.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus str. Newman] gi|160368912|gb|ABX29883.1| response regulator VraR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253727580|gb|EES96309.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257861292|gb|EEV84104.1| two-component system response regulator [Staphylococcus aureus A5948] gi|259159238|gb|EEW44298.1| two-component response regulator [Staphylococcus aureus 930918-3] gi|259161692|gb|EEW46283.1| two-component response regulator [Staphylococcus aureus D30] gi|269941355|emb|CBI49752.1| response regulator VraR [Staphylococcus aureus subsp. aureus TW20] gi|282593131|gb|EFB98130.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9765] gi|294823566|gb|EFG39993.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9754] gi|298695222|gb|ADI98444.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|300078692|gb|ADJ67243.1| VraR [Staphylococcus aureus] gi|300078695|gb|ADJ67245.1| VraR [Staphylococcus aureus] gi|300078698|gb|ADJ67247.1| VraR [Staphylococcus aureus] gi|302751756|gb|ADL65933.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342303|gb|EFM08195.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196046|gb|EFU26406.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS01] gi|320139738|gb|EFW31607.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142346|gb|EFW34160.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323439154|gb|EGA96882.1| two-component response regulator [Staphylococcus aureus O11] gi|323441562|gb|EGA99212.1| two-component response regulator [Staphylococcus aureus O46] gi|329728633|gb|EGG65063.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus 21189] Length = 209 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLA 185 + Y++ T+ +A+ V + G +V+ KKR+ LTERE L L Sbjct: 100 DSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLI 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 160 AKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|47564323|ref|ZP_00235368.1| DNA-binding response regulator, putative [Bacillus cereus G9241] gi|47558475|gb|EAL16798.1| DNA-binding response regulator, putative [Bacillus cereus G9241] Length = 204 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F + LT E LQL DGY +EIA L S T++ ++ KL+ + ++ Sbjct: 130 FPTSTEIIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFNKLNVSSSLE 189 Query: 224 AIAKAIRFGYI 234 A+ K I+ GYI Sbjct: 190 AVTKGIKLGYI 200 >gi|327441352|dbj|BAK17717.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 224 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE LQL DG ++ I E L +S TV ++ S K++ +R QA+ AI+ G+ Sbjct: 161 LTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAIKNGW 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|298346055|ref|YP_003718742.1| LuxR family response regulator [Mobiluncus curtisii ATCC 43063] gi|315657448|ref|ZP_07910330.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236116|gb|ADI67248.1| LuxR family response regulator [Mobiluncus curtisii ATCC 43063] gi|315491920|gb|EFU81529.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 248 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 39/63 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RET L L G T++EIA +L +S+ TV ++G+ K+ A +R+QA+ A G Sbjct: 185 SLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARDRVQAVIFAYENG 244 Query: 233 YIC 235 + Sbjct: 245 LVS 247 >gi|161520519|ref|YP_001583946.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353291|ref|YP_001948918.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221209754|ref|ZP_03582735.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia multivorans CGD1] gi|160344569|gb|ABX17654.1| transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189337313|dbj|BAG46382.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221170442|gb|EEE02908.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia multivorans CGD1] Length = 239 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 163 LFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + K S AR LT RE L +G T+ EI + L +S TVN ++ + KL A N+ Sbjct: 164 MVPKLSPEARVALTAREREVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNK 223 Query: 222 IQAIAKAIRFGYI 234 +QA+ KAI G I Sbjct: 224 VQAVVKAISAGLI 236 >gi|329314560|gb|AEB88973.1| Response regulator protein vraR [Staphylococcus aureus subsp. aureus T0131] Length = 209 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLA 185 + Y++ T+ +A+ V + G +V+ KKR+ LTERE L L Sbjct: 100 DSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLI 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 160 AKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|168700566|ref|ZP_02732843.1| two-component transcriptional regulator, LuxR family protein [Gemmata obscuriglobus UQM 2246] Length = 216 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERET ++L GY+++EIA +L LSV TV Y + KL R+ + A R G Sbjct: 152 DLSERETEVVRLIALGYSNKEIAGRLKLSVKTVETYKTRSMEKLGVRTRVDIVQYAARRG 211 Query: 233 YIC 235 ++ Sbjct: 212 WLV 214 >gi|91783993|ref|YP_559199.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687947|gb|ABE31147.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 213 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L+ +G ++ I + L +S TV ++G+ KLD +R QA+A A R G Sbjct: 151 SLTEREMDVLRALAEGSSNGRIGKMLNISESTVKTHIGNVLAKLDLRDRTQAVAFAWRHG 210 Query: 233 YI 234 I Sbjct: 211 LI 212 >gi|332204409|gb|EGJ18474.1| response regulator [Streptococcus pneumoniae GA47901] Length = 210 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY+I TS L + V A G A Q ++ +E + LT RE LQL Sbjct: 98 KGYMIKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA+ L +S+ TV ++ + KL+ +R QA Sbjct: 158 KGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|320333696|ref|YP_004170407.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754985|gb|ADV66742.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 214 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L ERET+ L+L GY++++IA +L +S TV L KL NR QA AIR G Sbjct: 150 DLNERETTILKLLAQGYSNQDIALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREG 209 >gi|308176141|ref|YP_003915547.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743604|emb|CBT74576.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 224 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE L+L G + EI++ L +S TV ++ VKLD +R+QA+ A R G Sbjct: 159 ITNREFEILKLLAKGLNNPEISKTLAISETTVKTHMAKIFVKLDVRDRVQALVAATRMGL 218 Query: 234 I 234 I Sbjct: 219 I 219 >gi|302189119|ref|ZP_07265792.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642] Length = 909 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 848 LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGL 907 Query: 234 I 234 + Sbjct: 908 L 908 >gi|298491629|ref|YP_003721806.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233547|gb|ADI64683.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 238 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 40/62 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE LQL +GY++ IA++L +++ TV ++ + KL A +R QA +A+R G Sbjct: 176 SLTERELEVLQLIVEGYSNAVIAQRLFITIGTVKTHVRNILNKLCADDRTQAAVRALRSG 235 Query: 233 YI 234 + Sbjct: 236 IV 237 >gi|297243056|ref|ZP_06926994.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis AMD] gi|296889267|gb|EFH28001.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis AMD] Length = 246 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F+ L K RS + L +E + L GYT+ +IA +LGL +T+N ++ KL Sbjct: 147 FIRLSKSRSRSV--LPPQELKIMDLLAKGYTTNQIAAQLGLMPNTINTHIHRIYKKLHVS 204 Query: 220 NRIQAIA 226 NR+QAI+ Sbjct: 205 NRVQAIS 211 >gi|160893007|ref|ZP_02073795.1| hypothetical protein CLOL250_00545 [Clostridium sp. L2-50] gi|156865090|gb|EDO58521.1| hypothetical protein CLOL250_00545 [Clostridium sp. L2-50] Length = 207 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 33/52 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 NLTE+E ++L DG ++EIAE+L LS TV YL + +KLD +R Q Sbjct: 147 NLTEKEFELIRLVADGLNNKEIAEQLFLSEGTVRNYLSNILMKLDLRDRTQV 198 >gi|138896712|ref|YP_001127165.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196249414|ref|ZP_03148112.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|134268225|gb|ABO68420.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211171|gb|EDY05932.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] Length = 225 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ S KL+ +R QA+ AI+ G+ Sbjct: 162 LTRRECEVLQLLADGKSNRAIGETLYISEKTVKNHVSSILQKLNVNDRTQAVVVAIKNGW 221 Query: 234 I 234 + Sbjct: 222 V 222 >gi|330969335|gb|EGH69401.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 909 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 848 LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGL 907 Query: 234 I 234 + Sbjct: 908 L 908 >gi|325510834|gb|ADZ22470.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 217 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++TERE LQ G S+EIA +G+S TV A+L + KL +R +A+AKAI G Sbjct: 152 SITERELFILQSIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIEKG 211 Query: 233 YI 234 I Sbjct: 212 II 213 >gi|300788717|ref|YP_003769008.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299798231|gb|ADJ48606.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/97 (38%), Positives = 48/97 (49%), Gaps = 3/97 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 NG+++ + LAN V A G +VI L L + LT RE L LA G Sbjct: 99 NGFLLKDAPSDKLANAVRSVAIG--RRVIDSELALAAWETDDC-PLTPREIEILSLAARG 155 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 T +IA +L LS TV YL + KL+A NR+ AI Sbjct: 156 RTVSDIASELFLSAGTVRNYLAAVVTKLNARNRVHAI 192 >gi|196229624|ref|ZP_03128488.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196225950|gb|EDY20456.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 213 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 31/55 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L RE L L GY +EI E LG+S HTVN+++ KL +R QA+AK Sbjct: 153 GLAGREVEVLGLLAQGYLYKEIGESLGISTHTVNSHIRRIYEKLHVRSRSQAVAK 207 >gi|126652487|ref|ZP_01724659.1| DegU [Bacillus sp. B14905] gi|169826725|ref|YP_001696883.1| transcriptional regulatory protein degU [Lysinibacillus sphaericus C3-41] gi|126590758|gb|EAZ84873.1| DegU [Bacillus sp. B14905] gi|168991213|gb|ACA38753.1| Transcriptional regulatory protein degU (Protease production enhancer protein) [Lysinibacillus sphaericus C3-41] Length = 224 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE LQL DG ++ I E L +S TV ++ S K++ +R QA+ AI+ G+ Sbjct: 161 LTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAIKNGW 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|66044246|ref|YP_234087.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63254953|gb|AAY36049.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 920 Score = 45.1 bits (105), Expect = 0.008, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 859 LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGL 918 Query: 234 I 234 + Sbjct: 919 L 919 >gi|15896670|ref|NP_350019.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026518|gb|AAK81359.1|AE007840_3 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] Length = 217 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++TERE LQ G S+EIA +G+S TV A+L + KL +R +A+AKAI G Sbjct: 152 SITERELFILQSIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIEKG 211 Query: 233 YI 234 I Sbjct: 212 II 213 >gi|322374884|ref|ZP_08049398.1| DNA-binding response regulator VraR [Streptococcus sp. C300] gi|321280384|gb|EFX57423.1| DNA-binding response regulator VraR [Streptococcus sp. C300] Length = 210 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS L + V A G A Q ++ +E + +LT RE LQL Sbjct: 98 KGYMLKTSSADELLHAVRKVASGELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA++L +S+ TV ++ + KL+ +R QA Sbjct: 158 KGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|298247591|ref|ZP_06971396.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550250|gb|EFH84116.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G S+EIA +LG++ TV AYL S KL+ +R A+A A+ +G Sbjct: 168 LTKRERQVLAGVAQGERSKEIAVRLGITERTVRAYLTSIYTKLNVDSRASAVAVALAYGL 227 Query: 234 I 234 + Sbjct: 228 L 228 >gi|197121316|ref|YP_002133267.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171165|gb|ACG72138.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. K] Length = 208 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHT----VNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L L +G ++ IA +LG+S HT VNA LG KL A +R +AI +A Sbjct: 146 LTPREREVLALVAEGLGNKAIAARLGISEHTAKFHVNAILG----KLGAGSRAEAIVRAA 201 Query: 230 RFGYIC 235 R G + Sbjct: 202 RLGLVV 207 >gi|170756351|ref|YP_001781185.1| LuxR family transcriptional regulator [Clostridium botulinum B1 str. Okra] gi|169121563|gb|ACA45399.1| transcriptional regulator, LuxR family [Clostridium botulinum B1 str. Okra] Length = 865 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 49/94 (52%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L N+ IE I + +++ + LTERE +++ +G ++++I ++L + Sbjct: 770 LKNDKDIELTSKEDNFIKNLIDIMEPEKVKGELLTEREKEVMEILFEGSSNKQIGKRLNI 829 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S+ TV ++ + KL NR+QA+ K +F I Sbjct: 830 SLATVKTHMINIYSKLQVSNRVQAVEKYKKFKAI 863 >gi|153941243|ref|YP_001390894.1| LuxR family transcriptional regulator [Clostridium botulinum F str. Langeland] gi|152937139|gb|ABS42637.1| transcriptional regulator, LuxR family [Clostridium botulinum F str. Langeland] Length = 865 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/94 (26%), Positives = 49/94 (52%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L N+ IE I + +++ + LTERE +++ +G ++++I ++L + Sbjct: 770 LKNDKDIELTSKEDNFIKNLIDIMEPEKVKGELLTEREKEVMEILFEGASNKQIGKRLNI 829 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S+ TV ++ + KL NR+QA+ K +F I Sbjct: 830 SLATVKTHMINIYSKLQVSNRVQAVEKYKKFKAI 863 >gi|257057812|ref|YP_003135644.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587684|gb|ACU98817.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 250 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL +G + +A+KL LSV TV ++ S KL A +R A++KA R G Sbjct: 174 LSRREYQVLQLIAEGLENAAVADKLYLSVETVRTHVKSILRKLGARDRTHAVSKAFRSGL 233 Query: 234 IC 235 + Sbjct: 234 LV 235 >gi|188585286|ref|YP_001916831.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349973|gb|ACB84243.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 215 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 18/119 (15%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQ--VITD--FLELF-------KKRSSAARN--LT 175 +GY++ + A++ +I A + YQ VI D F +L K+S +N L+ Sbjct: 99 DGYILKKA-----ADDELISAIRSVYQGEVIVDKTFTKLLIDYYRNPDKQSGTEKNYDLS 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE LQL GYT++EIAEKL +S+ TV ++ KL R + + A+R I Sbjct: 154 DREKEVLQLIALGYTNKEIAEKLYISIKTVETHIARIKEKLGLNRRSELVRYAMRNNII 212 >gi|154488825|ref|ZP_02029674.1| hypothetical protein BIFADO_02133 [Bifidobacterium adolescentis L2-32] gi|154082962|gb|EDN82007.1| hypothetical protein BIFADO_02133 [Bifidobacterium adolescentis L2-32] Length = 230 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 6/74 (8%) Query: 155 QVITDF-LELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 Q+I D ++ + R AR L ERE + LA DGYT+ EIAE++ +S TV A++ Sbjct: 144 QLINDLNMQQPQSRRDEARAMLDALPEREREAVVLAADGYTNAEIAERMFISERTVKAHI 203 Query: 210 GSATVKLDAVNRIQ 223 SA +L + R+Q Sbjct: 204 SSAGDRL-CMGRVQ 216 >gi|86359866|ref|YP_471757.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] gi|86283968|gb|ABC93030.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] Length = 261 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 30/62 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L RE CL A G S++I + LGLS HT YL SA KL AIA A+ Sbjct: 193 LGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKSARYKLGCPTLSAAIAHAVHLNL 252 Query: 234 IC 235 I Sbjct: 253 IT 254 >gi|75910715|ref|YP_325011.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704440|gb|ABA24116.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 236 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 2/80 (2%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 QVI D L+ + + A NL+ RE L+L +G ++ EIAEKL LS +TV ++ Sbjct: 159 QVI-DHLKPPSAKGNTA-NLSGRELEVLKLMVEGLSNPEIAEKLYLSPNTVKTHVRGIMN 216 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL +R+QA A+R G + Sbjct: 217 KLAVDDRVQAAVVALRSGLV 236 >gi|304404571|ref|ZP_07386232.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304346378|gb|EFM12211.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 217 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 A +++ D++E K+ S +L++RE L L GY ++EIAE+L +SV TV + Sbjct: 130 ATKRLMNDYVERMKRGESGDVYHSLSDREKEVLGLTAKGYANKEIAEQLVISVKTVETHK 189 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL R + I A++ G + Sbjct: 190 SNVMEKLGLKTRPELIKYAMKKGLL 214 >gi|56459425|ref|YP_154706.1| response regulator [Idiomarina loihiensis L2TR] gi|56178435|gb|AAV81157.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina loihiensis L2TR] Length = 198 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 4/94 (4%) Query: 143 NEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 NE+I C QVI++ EL + LTE+E L+LA G +++ IAE+L + Sbjct: 107 NELIASLQRVCLGEQVISN--ELLLQALGQHDPLTEKERKALRLASQGLSTQAIAEQLFI 164 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + T YL A KL A NR +A A + G++ Sbjct: 165 APGTARNYLSEAINKLHASNRTEAARIAHQKGWL 198 >gi|15805916|ref|NP_294615.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6458612|gb|AAF10469.1|AE001942_1 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 194 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE+ L L G++++EIA LG+S TV +L KL+A +R +A+++A G Sbjct: 132 RLTPRESEVLPLLARGFSNKEIARDLGVSPDTVKDHLARLYSKLNAGDRTEAVSRARSIG 191 Query: 233 YI 234 + Sbjct: 192 LL 193 >gi|325286932|ref|YP_004262722.1| LuxR family two component transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324322386|gb|ADY29851.1| two component transcriptional regulator, LuxR family [Cellulophaga lytica DSM 7489] Length = 215 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +F + +LT RE L+L + YT++EIA++L LS HT+ +Y + KL+ N Sbjct: 142 MFASKKEKEISLTNREKEVLKLIAEEYTTQEIADELFLSKHTIESYRKNLISKLNVKNLA 201 Query: 223 QAIAKAIRFGYI 234 AI+ G + Sbjct: 202 GLTKHAIKIGLL 213 >gi|304390186|ref|ZP_07372140.1| two component system response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326668|gb|EFL93912.1| two component system response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 248 Score = 45.1 bits (105), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 39/63 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RET L L G T++EIA +L +S+ TV ++G+ K+ A +R+QA+ A G Sbjct: 185 SLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARDRVQAVIFAYENG 244 Query: 233 YIC 235 + Sbjct: 245 LVS 247 >gi|302545751|ref|ZP_07298093.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302463369|gb|EFL26462.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 8/82 (9%) Query: 162 ELFKKRSSAARN--------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 E ++R + RN LT RET L+L G +++EIAE L L+ TV ++G Sbjct: 141 EFARQRPAPRRNSSLLRRSGLTPRETEVLELIARGLSNQEIAESLVLAEQTVKTHIGRVL 200 Query: 214 VKLDAVNRIQAIAKAIRFGYIC 235 KL +R QA+ A G + Sbjct: 201 AKLGLRDRAQAVIFAYESGLVT 222 >gi|224536197|ref|ZP_03676736.1| hypothetical protein BACCELL_01063 [Bacteroides cellulosilyticus DSM 14838] gi|224522181|gb|EEF91286.1| hypothetical protein BACCELL_01063 [Bacteroides cellulosilyticus DSM 14838] Length = 255 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE LQL G S+EIA L +S+HTVN + + KL N I+AI ++ G Sbjct: 193 HLTQRELEILQLIQKGLLSKEIAHNLCISIHTVNIHRQNLLHKLGVQNSIEAINAGLKSG 252 >gi|299536017|ref|ZP_07049336.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis ZC1] gi|298728622|gb|EFI69178.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis ZC1] Length = 224 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE LQL DG ++ I E L +S TV ++ S K++ +R QA+ AI+ G+ Sbjct: 161 LTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVVTAIKNGW 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|229552512|ref|ZP_04441237.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1] gi|229314064|gb|EEN80037.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1] Length = 233 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 40/80 (50%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 QV T + LT RE LQL G +++EIA +L +++ TV ++ + Sbjct: 140 QVTTKMMNRMNHPQPQYDELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILA 199 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLD +R QA A++ G + Sbjct: 200 KLDVEDRTQAAIYALKHGLV 219 >gi|229197293|ref|ZP_04324023.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228586170|gb|EEK44258.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 187 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F + LT E LQL DGY +EIA L S T++ ++ KL+ + ++ Sbjct: 112 FPTPTETIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLE 171 Query: 224 AIAKAIRFGYI 234 A+ K I+ GYI Sbjct: 172 AVTKGIKLGYI 182 >gi|296130095|ref|YP_003637345.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296021910|gb|ADG75146.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 207 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 39/80 (48%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 QV T ++ + R L RE L+L +GY + EIA+ L S TV L T Sbjct: 128 QVGTLQRQVLRPRGLTFTGLAAREIDVLKLVAEGYDTAEIAQHLAYSERTVKNVLHDVTT 187 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 +L NR A+A A+R G I Sbjct: 188 RLQLRNRSHAVAYALREGLI 207 >gi|52142347|ref|YP_084482.1| response regulator of salavaricin regulon [Bacillus cereus E33L] gi|51975816|gb|AAU17366.1| response regulator of salavaricin regulon [Bacillus cereus E33L] Length = 192 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F + LT E LQL DGY +EIA L S T++ ++ KL+ + ++ Sbjct: 117 FPTPTETIEELTHTEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLE 176 Query: 224 AIAKAIRFGYI 234 A+ K I+ GYI Sbjct: 177 AVTKGIKLGYI 187 >gi|218889798|ref|YP_002438662.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218770021|emb|CAW25783.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 906 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 38/65 (58%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A L+ RE + L+L G +++EI+E+L +S+HTV ++ KL R QA+A+A Sbjct: 841 AGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLGVERRTQAVARAK 900 Query: 230 RFGYI 234 G + Sbjct: 901 HMGLL 905 >gi|167590019|ref|ZP_02382407.1| transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 233 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ DG T+ EI+ + +SV+TVN ++ +A KL N A+A+A G Sbjct: 172 LTAREVEVLKWVADGKTASEISMIMLISVYTVNFHVKNAVTKLKTSNTTAAVARAAMLG 230 >gi|119026056|ref|YP_909901.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118765640|dbj|BAF39819.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 209 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 6/74 (8%) Query: 155 QVITDF-LELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 Q+I D ++ + R AR L ERE + LA DGYT+ EIAE++ +S TV A++ Sbjct: 123 QLINDLNMQQPQSRRDEARAMLDALPEREREAVVLAADGYTNAEIAERMFISERTVKAHI 182 Query: 210 GSATVKLDAVNRIQ 223 SA +L + R+Q Sbjct: 183 SSAGDRL-CMGRVQ 195 >gi|75674825|ref|YP_317246.1| LuxR family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419695|gb|ABA03894.1| Transcriptional regulatory protein, LuxR family [Nitrobacter winogradskyi Nb-255] Length = 241 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L +K A NLT RE LQ +G + EI+ L +S H V+ KL+A NR Sbjct: 169 LGQKYKPAPVNLTPREMDILQWMAEGKSDWEISVILKVSEHLVDKIARQLRAKLNATNRT 228 Query: 223 QAIAKAIRFGYI 234 Q +A A+R I Sbjct: 229 QTVAVALRHNLI 240 >gi|317501835|ref|ZP_07960020.1| hypothetical protein HMPREF1026_01964 [Lachnospiraceae bacterium 8_1_57FAA] gi|316896725|gb|EFV18811.1| hypothetical protein HMPREF1026_01964 [Lachnospiraceae bacterium 8_1_57FAA] Length = 199 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE ++ G G T EIA++L +S T+ ++ S KL A N I+A KAI GY Sbjct: 135 LTDREAEIIKAIGTGKTKHEIAQELYISERTLYNHIQSIYDKLGAKNAIEAYNKAIALGY 194 Query: 234 IC 235 I Sbjct: 195 IT 196 >gi|229185386|ref|ZP_04312569.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228598119|gb|EEK55756.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 186 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F + LT E LQL DGY +EIA L S T++ ++ KL+ + ++ Sbjct: 112 FPTSTEIIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLE 171 Query: 224 AIAKAIRFGYI 234 A+ K I+ GYI Sbjct: 172 AVTKGIKLGYI 182 >gi|77460927|ref|YP_350434.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens Pf0-1] gi|77384930|gb|ABA76443.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 911 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Query: 149 AHGACYQVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A C Q++ F + + S L+ RE + L+L G +++EI+++L +S+HTV Sbjct: 822 ATAFCQQLLEHFPQASVRSQAESVTTEQLSSRELAVLRLIAQGCSNQEISDQLFISLHTV 881 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + KL R QA+A+A G + Sbjct: 882 KTHASHINSKLGVERRTQAVARAKELGVL 910 >gi|258539885|ref|YP_003174384.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|257151561|emb|CAR90533.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 221 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 40/80 (50%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 QV T + LT RE LQL G +++EIA +L +++ TV ++ + Sbjct: 128 QVTTKMMNRMNHPQPQYDELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILA 187 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLD +R QA A++ G + Sbjct: 188 KLDVEDRTQAAIYALKHGLV 207 >gi|196229129|ref|ZP_03127994.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226361|gb|EDY20866.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 213 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + + LT+RE L L GY +EI E +G+S HTVN++ KL +R QA+AK Sbjct: 148 AQSGEGLTDREREVLDLLAQGYLYKEIGEIMGISTHTVNSHNRHIYEKLQVRSRGQAVAK 207 >gi|261404981|ref|YP_003241222.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. Y412MC10] gi|261281444|gb|ACX63415.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. Y412MC10] Length = 865 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 34/54 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT +ET+ L L G T++ IA++LGL+V TV YL KL +R+QA+ K Sbjct: 801 LTPQETTVLALLHRGDTNQSIADELGLTVGTVKVYLNRIYSKLGVSSRVQAVLK 854 >gi|86608341|ref|YP_477103.1| LuxR family transcriptional regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556883|gb|ABD01840.1| transcriptional regulator, LuxR family [Synechococcus sp. JA-2-3B'a(2-13)] Length = 87 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE ++L G T+++IAE+L +S TV+ ++ + K NR+ + A+++G Sbjct: 11 LSERELQVIELIAAGLTNQDIAERLEISKRTVDNHISNILSKTRTANRVALVRWALQWGK 70 Query: 234 IC 235 IC Sbjct: 71 IC 72 >gi|26990610|ref|NP_746035.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|24985594|gb|AAN69499.1|AE016584_7 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] Length = 183 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 32/59 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 R L RE CL G+T++EIA+ G+S V +G A +KL R +A+A+R Sbjct: 71 RGLAPRELQCLLEVAQGFTTKEIAKHFGISESGVEKRIGDAMLKLKVARRAAMVAEAMR 129 >gi|254242610|ref|ZP_04935932.1| hypothetical protein PA2G_03368 [Pseudomonas aeruginosa 2192] gi|126195988|gb|EAZ60051.1| hypothetical protein PA2G_03368 [Pseudomonas aeruginosa 2192] Length = 906 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 38/65 (58%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A L+ RE + L+L G +++EI+E+L +S+HTV ++ KL R QA+A+A Sbjct: 841 AGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLGVERRTQAVARAK 900 Query: 230 RFGYI 234 G + Sbjct: 901 HMGLL 905 >gi|307704250|ref|ZP_07641169.1| response regulator [Streptococcus mitis SK597] gi|307622161|gb|EFO01179.1| response regulator [Streptococcus mitis SK597] Length = 210 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 2/97 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY++ TS L + V A G A Q ++ +E + +LT RE LQL Sbjct: 99 GYMLKTSRADELLHAVRKVATGELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQLIAK 158 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA++L +S+ TV ++ + KL+ +R QA Sbjct: 159 GYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|322421400|ref|YP_004200623.1| LuxR family two component transcriptional regulator [Geobacter sp. M18] gi|320127787|gb|ADW15347.1| two component transcriptional regulator, LuxR family [Geobacter sp. M18] Length = 216 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 53/112 (47%), Gaps = 8/112 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKR-----SSAARNLTERETS 180 NGYV+ + F LA + A G Y +V T ++ + +R + NL+ RE Sbjct: 100 NGYVLKDAAFSELATAIRAVAAGETYLPPRVTTLLIKEYLQRIPDEVPATYENLSARERE 159 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG ++EIA G+SV TV S KLD + + A+R G Sbjct: 160 ILQLIADGSNAKEIAFAFGVSVKTVENQRHSIMKKLDLFSIAELTKYAVRQG 211 >gi|107103438|ref|ZP_01367356.1| hypothetical protein PaerPA_01004508 [Pseudomonas aeruginosa PACS2] Length = 906 Score = 45.1 bits (105), Expect = 0.009, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 38/65 (58%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A L+ RE + L+L G +++EI+E+L +S+HTV ++ KL R QA+A+A Sbjct: 841 AGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLGVERRTQAVARAK 900 Query: 230 RFGYI 234 G + Sbjct: 901 HMGLL 905 >gi|158318087|ref|YP_001510595.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113492|gb|ABW15689.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 244 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L +G ++ EIA +L L TV +++ S KL A +R QA+ A G+ Sbjct: 179 LTDREADVLRLISEGLSNNEIANRLYLGAQTVKSHVSSVLAKLGARDRTQAVIIAYESGF 238 Query: 234 I 234 + Sbjct: 239 V 239 >gi|329938783|ref|ZP_08288179.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329302274|gb|EGG46166.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 212 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ A DG EIAE+ L+ TV YL SA KL NR A+ A G+ Sbjct: 152 LTAREAEVLEFAADGAPVAEIAERAALAEGTVRNYLSSAVSKLGVENRHAAVRLAREHGW 211 Query: 234 I 234 + Sbjct: 212 V 212 >gi|302545866|ref|ZP_07298208.1| two-component system response regulator TcsR2 [Streptomyces hygroscopicus ATCC 53653] gi|302463484|gb|EFL26577.1| two-component system response regulator TcsR2 [Streptomyces himastatinicus ATCC 53653] Length = 208 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 30/52 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L LA DG + EIA L LS T+ YL + T K A NR+ AI Sbjct: 148 LTERELGVLSLAADGASIAEIARTLHLSNGTIRNYLAAITRKTGARNRVDAI 199 >gi|288554158|ref|YP_003426093.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288545318|gb|ADC49201.1| two-component response regulator of extracellular degradative enzyme [Bacillus pseudofirmus OF4] Length = 233 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ + K+ +R QA+ +AI+ GY Sbjct: 170 LTRRECEVLQLMTDGQSNRAIGESLYISEKTVKNHVSNILQKMSVNDRTQAVVEAIKKGY 229 Query: 234 I 234 + Sbjct: 230 V 230 >gi|118590980|ref|ZP_01548380.1| two component transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] gi|118436502|gb|EAV43143.1| two component transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] Length = 217 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 46/75 (61%), Gaps = 1/75 (1%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 FL++ ++ + A LT+RE L L G +++EIAE LG+S+ TV+ + S KL+ Sbjct: 138 FLKILEE-TPAPPVLTDRERQTLNLILAGRSNKEIAEGLGISIKTVDKHRTSLMQKLNVH 196 Query: 220 NRIQAIAKAIRFGYI 234 + Q +AKA++ G I Sbjct: 197 SVPQLMAKALKEGMI 211 >gi|1498492|gb|AAC45136.1| ORF1; homolog to response regulator of a putative signal transduction system [Streptomyces lividans] Length = 225 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 35/64 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT RE LQL G ++ E+AE+L LS TV ++G KL +R+QA+ A Sbjct: 157 QTLTPRELEVLQLLAQGLSNAELAERLYLSETTVKTHVGRILAKLQLRDRVQAVVTAYET 216 Query: 232 GYIC 235 G + Sbjct: 217 GLVS 220 >gi|13488404|ref|NP_109411.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14028158|dbj|BAB54750.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 242 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 9/152 (5%) Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 F G LP+ + + V++ + + ++ GI P+ + G V S+ + Sbjct: 93 FRWGELPVARLVPRAKLVMDEAAEFGMK--------EGICIPIHVPLAGPGVVTMASDRM 144 Query: 140 MLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + + C L + LT RE L+ + G ++++IA L Sbjct: 145 EVPPSAMPLIETLCVHTFRSLSALGTPGDGNEPTPLTARERELLEWSAQGKSTDDIACIL 204 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 G++ +TV ++ + KLDA+N AI KA+R Sbjct: 205 GVTRNTVESHQRNIRGKLDAINVAHAIVKALR 236 >gi|320012915|gb|ADW07765.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 204 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 34/53 (64%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R+LTERE L+L DG ++ EIAE+L +S+HTV+ ++ K +R QA Sbjct: 143 RDLTEREIDVLRLIRDGLSNAEIAERLVVSLHTVSTHVSRVLTKTGCQSRAQA 195 >gi|218458210|ref|ZP_03498301.1| LuxR family transcriptional regulator [Rhizobium etli Kim 5] Length = 93 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE CL++ G+ +++I+ +L +S+ V YL SA KL +A+AKA Sbjct: 32 HLSRRELQCLEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKATALE 91 Query: 233 YI 234 I Sbjct: 92 LI 93 >gi|159900604|ref|YP_001546851.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893643|gb|ABX06723.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 191 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE LQL +G T+ +IA++L +S HTV ++ + KLD +R +AI + G Sbjct: 128 QLSEREHEVLQLLAEGLTNRQIAQRLIISEHTVKFHVSALLGKLDVSSRTEAIRVGAQRG 187 Query: 233 YI 234 I Sbjct: 188 LI 189 >gi|297160873|gb|ADI10585.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 5/101 (4%) Query: 139 LMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARN--LTERETSCLQLAGDGYTSEEI 194 ++ A E ++ A ++I DF +++ AAR LT RET L+L G +++EI Sbjct: 122 IVAAGEALL-APSVTRRLIADFARQRPAPRKNFAARRSGLTPRETEVLELIARGLSNQEI 180 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 AE L L+ TV ++G KL +R QA+ A G + Sbjct: 181 AESLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYESGLVT 221 >gi|317969061|ref|ZP_07970451.1| DNA-binding response regulator [Synechococcus sp. CB0205] Length = 236 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL G ++ I ++L LSV TV ++ KL+A +RIQA + IR G Sbjct: 169 QLTPREVDILQLMAGGTENQGIGQRLHLSVETVKDHVRHIFHKLNAKSRIQAAVQGIRLG 228 Query: 233 YI 234 + Sbjct: 229 LV 230 >gi|288962660|ref|YP_003452954.1| two-component response regulator [Azospirillum sp. B510] gi|288914926|dbj|BAI76410.1| two-component response regulator [Azospirillum sp. B510] Length = 229 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 9/109 (8%) Query: 129 NGYVIFTSEFLMLANEV--IIEAHGACYQVITDFL------ELFKKRSSAARNLTERETS 180 +GY++ SE + + V +IE I ++ FK R A LT RET Sbjct: 113 SGYILKDSEPVDMVEAVRGLIEGRSPISASIARYIIRRVQDGSFKDRKPAPL-LTPRETD 171 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L G+T +IA++LGLS TV +Y+ + KL+ +R +A+ +AI Sbjct: 172 ILWGIAKGFTYNDIADRLGLSRQTVPSYIKNIYRKLEVNSRSEAVYEAI 220 >gi|302550470|ref|ZP_07302812.1| two component response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468088|gb|EFL31181.1| two component response regulator [Streptomyces viridochromogenes DSM 40736] Length = 213 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LT+RE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R Sbjct: 149 AGSLTDREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVR 208 Query: 231 FG 232 G Sbjct: 209 HG 210 >gi|307154251|ref|YP_003889635.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984479|gb|ADN16360.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 231 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 6/82 (7%) Query: 155 QVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +V T F F S N LT RE LQ G ++E+IA++L ++V TV A+ Sbjct: 138 EVATQFFHYFNTCSEPLVNAEKKIDLTRREKEVLQYLIKGLSNEQIAQQLYITVATVKAH 197 Query: 209 LGSATVKLDAVNRIQAIAKAIR 230 L + KL NR QAI A++ Sbjct: 198 LTAIFNKLGVKNRTQAIVAAMK 219 >gi|86157284|ref|YP_464069.1| two component LuxR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85773795|gb|ABC80632.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 211 Score = 44.7 bits (104), Expect = 0.009, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 8/66 (12%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHT----VNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L L +G ++ IA +LG+S HT VNA LG KL A +R +AI +A Sbjct: 149 LTPREREVLALVAEGLGNKGIAARLGISEHTAKFHVNAILG----KLGAGSRAEAIVRAA 204 Query: 230 RFGYIC 235 R G + Sbjct: 205 RLGLVV 210 >gi|26987503|ref|NP_742928.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|24982170|gb|AAN66392.1|AE016267_1 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] Length = 905 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+L G ++++I+E+L +S+HTV + KL R QA+AKA G Sbjct: 844 LSGREMAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGVERRTQAVAKAKSLGL 903 Query: 234 I 234 + Sbjct: 904 L 904 >gi|152989443|ref|YP_001346571.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150964601|gb|ABR86626.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 906 Score = 44.7 bits (104), Expect = 0.009, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 38/65 (58%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A L+ RE + L+L G +++EI+E+L +S+HTV ++ KL R QA+A+A Sbjct: 841 AGEVLSGRELAVLELIAQGLSNQEISERLFISLHTVKSHARHINDKLGVERRTQAVARAK 900 Query: 230 RFGYI 234 G + Sbjct: 901 HMGLL 905 >gi|294676640|ref|YP_003577255.1| LuxR family autoinducer-binding transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294475460|gb|ADE84848.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacter capsulatus SB 1003] Length = 261 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE CL A G +++E + + SV TV +L +A KL A NR A+A+A+R G Sbjct: 201 LSARERECLDHAAQGRSAKETSRLIERSVPTVVMHLNAAVRKLGARNRSHAVAEAVRRGL 260 Query: 234 I 234 I Sbjct: 261 I 261 >gi|288904269|ref|YP_003429490.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|306830297|ref|ZP_07463468.1| possible response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288730994|emb|CBI12538.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] gi|304427544|gb|EFM30645.1| possible response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 207 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +TE++ LQ+ DG T++EIA +L ++ TV YL NR QAIA AIR Sbjct: 147 ITEQQKQLLQMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAYAIRHNL 206 Query: 234 I 234 I Sbjct: 207 I 207 >gi|229162035|ref|ZP_04290009.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228621441|gb|EEK78293.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 186 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F + LT E LQL DGY +EIA L S T++ ++ KL+ + ++ Sbjct: 112 FPTSTEIIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLE 171 Query: 224 AIAKAIRFGYI 234 A+ K I+ GYI Sbjct: 172 AVTKGIKLGYI 182 >gi|284034837|ref|YP_003384768.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283814130|gb|ADB35969.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 219 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L DG ++ EIA L +S TV Y+ KLD +R+QA+ A R G Sbjct: 158 LTPRELEVLLLMADGLSNSEIAATLVISHETVKTYVSRILTKLDLRDRVQAVVYAYRRGL 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|226860311|gb|ACO88865.1| transcriptional regulatory protein [Microbacterium sp. MA1] Length = 228 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 42/81 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ F +++ A LT+RE+ L+L G T+ EIA LG+S TV +++ Sbjct: 144 RVLQGFRRAGREQVPVAPELTDRESDVLRLIARGQTNTEIASTLGISSVTVKSHVNHIFT 203 Query: 215 KLDAVNRIQAIAKAIRFGYIC 235 KLD +R AI A G + Sbjct: 204 KLDLRDRAAAIVYAFDHGLVV 224 >gi|148546040|ref|YP_001266142.1| regulatory protein LuxR [Pseudomonas putida F1] gi|148510098|gb|ABQ76958.1| regulatory protein, LuxR [Pseudomonas putida F1] Length = 905 Score = 44.7 bits (104), Expect = 0.010, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+L G ++++I+E+L +S+HTV + KL R QA+AKA G Sbjct: 844 LSGREMAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGVERRTQAVAKAKSLGL 903 Query: 234 I 234 + Sbjct: 904 L 904 >gi|27376173|ref|NP_767702.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349312|dbj|BAC46327.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 32/57 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE + A G ++ EI E L ++ T +L +A KL AVNR A+A AIR Sbjct: 180 LTPREREVISWASQGKSAWEIGEILHITQRTAEEHLATAARKLGAVNRTHAVALAIR 236 >gi|322390996|ref|ZP_08064501.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321142300|gb|EFX37773.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 210 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 5/114 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTE 176 +PV L GY++ TS + V A G + + T+ + K R + A +LT Sbjct: 90 YPV-LDAGAKGYILKTSSATEILQAVRKVAKGE-FAIETEVSQKVKSRKNHAELHDDLTA 147 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 148 RERDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFR 201 >gi|297562938|ref|YP_003681912.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847386|gb|ADH69406.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 231 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LT RE L GYT+ EI E+L LS+ TV ++G K + +R+QA+ A Sbjct: 158 AVASLTPREQEVLVAVALGYTNTEICERLVLSMPTVKTHVGHVLAKTGSRDRVQAVLFAF 217 Query: 230 RFGYI 234 R G + Sbjct: 218 RAGLV 222 >gi|209548400|ref|YP_002280317.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534156|gb|ACI54091.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 240 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 31/58 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T E CL+L G EIA+ L L+ + VN ++GSA KL R QA+ A+R Sbjct: 178 FTRNELDCLRLTAGGRKGAEIAKLLDLTENAVNNHIGSAIKKLGCTTRTQAVVSALRL 235 >gi|312198290|ref|YP_004018351.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311229626|gb|ADP82481.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 248 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 4/91 (4%) Query: 149 AHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 A G ++I F+ + +S A LT+RE + L +GY++ EIA+ L +SV T Sbjct: 152 APGVTRRLIAAFVRVPAPPASPLTGLASTLTDRERAVLTQIANGYSNAEIAQALYVSVST 211 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 V ++G KL A +R Q + A G + Sbjct: 212 VKTHVGHLLAKLAARDRAQLVIAAYESGLVA 242 >gi|220909919|ref|YP_002485230.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866530|gb|ACL46869.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 217 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 5/111 (4%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSS--AARNLTERETSCLQ 183 + Y I + L + + GA Y Q+ +E K S+ L++RE L+ Sbjct: 107 DAYCIKGASVDRLLSAIAAAQEGATYLDPQIARQVIEHLKPPSNNNMLGQLSQRELDVLK 166 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +GY++ EIA KL LS +T+ ++ KL +R+QA A+R G + Sbjct: 167 LMVEGYSNPEIATKLYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRAGLV 217 >gi|147678376|ref|YP_001212591.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274473|dbj|BAF60222.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 223 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL +G +++EIA KL +++ TV A++ S +KL+ +R QA AI+ Sbjct: 159 LTLREKEVLQLIVNGLSNKEIAGKLNITLRTVKAHVSSILMKLNVNDRTQAAVLAIQENL 218 Query: 234 I 234 + Sbjct: 219 V 219 >gi|116495146|ref|YP_806880.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191638654|ref|YP_001987820.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus casei BL23] gi|227534839|ref|ZP_03964888.1| LuxR family response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239632026|ref|ZP_04675057.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066710|ref|YP_003788733.1| CitB family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116105296|gb|ABJ70438.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190712956|emb|CAQ66962.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus casei BL23] gi|227187595|gb|EEI67662.1| LuxR family response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526491|gb|EEQ65492.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439117|gb|ADK18883.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327382696|gb|AEA54172.1| two component transcriptional regulator, LuxR family [Lactobacillus casei LC2W] gi|327385883|gb|AEA57357.1| two component transcriptional regulator, LuxR family [Lactobacillus casei BD-II] Length = 221 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 40/80 (50%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 QV T + LT RE LQL G +++EIA +L +++ TV ++ + Sbjct: 128 QVTTKMMNRMNHPQPQYDELTNREREVLQLIAQGKSNQEIATELFITLKTVKTHVSNILA 187 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLD +R QA A++ G + Sbjct: 188 KLDVEDRTQAAIYALKHGLV 207 >gi|307708226|ref|ZP_07644693.1| response regulator [Streptococcus mitis NCTC 12261] gi|307615672|gb|EFN94878.1| response regulator [Streptococcus mitis NCTC 12261] Length = 210 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 2/97 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY++ TS L + V A G A Q ++ +E + +LT RE LQL Sbjct: 99 GYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQLIAK 158 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA++L +S+ TV ++ + KL+ +R QA Sbjct: 159 GYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|307330274|ref|ZP_07609421.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306884071|gb|EFN15110.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 233 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query: 167 RSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 R ++AR L+ERE L+L DG ++ EIA ++ + TV ++G+ KL +R Sbjct: 159 REASARALGERLSEREAVVLRLMTDGLSNSEIAARMAVGPATVKTHVGAVLTKLGVRDRT 218 Query: 223 QAIAKAIRFGYIC 235 QA+ A G++ Sbjct: 219 QAVIAAYESGFVT 231 >gi|239638058|ref|ZP_04679017.1| response regulator protein VraR [Staphylococcus warneri L37603] gi|239596341|gb|EEQ78879.1| response regulator protein VraR [Staphylococcus warneri L37603] Length = 209 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 3/109 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLA 185 + Y++ T+ +A V HG +V+ KKR+ LT+RE L L Sbjct: 100 DSYILKTTSASDIAEAVRKTYHGESVFEPEVLVKMRNRMKKRAELYEMLTDREMEILLLI 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 160 AKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|196230839|ref|ZP_03129700.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196225180|gb|EDY19689.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 221 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%) Query: 160 FLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LE+F K + AR+ LT RE L++ G T +E A L +S +T + Y+ S KL Sbjct: 140 VLEMFSKANPPARDYGLTPREQEILEVLVQGKTIKEAAAALKISYYTADEYIRSVYDKLQ 199 Query: 218 AVNRIQAIAKAIRFGYI 234 +R A+AKA+ G + Sbjct: 200 VRSRSSAVAKAVSEGLV 216 >gi|251800174|ref|YP_003014905.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547800|gb|ACT04819.1| transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 229 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%) Query: 166 KRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 K S AAR L+E+E +Q DG+T++EIA L ++ TV ++ + +K + NR Sbjct: 157 KHSPAARAAYALSEKELRVMQYIADGFTTKEIAPFLNIAESTVKYFINNVMLKTSSRNRT 216 Query: 223 QAIAKAIR 230 +A+A R Sbjct: 217 EAVANLYR 224 >gi|167037195|ref|YP_001664773.1| two component LuxR family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040665|ref|YP_001663650.1| two component LuxR family transcriptional regulator [Thermoanaerobacter sp. X514] gi|166854905|gb|ABY93314.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X514] gi|166856029|gb|ABY94437.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 208 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 36/58 (62%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + ++LT RE L+L GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 138 QETLKKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQA 195 >gi|311107673|ref|YP_003980526.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310762362|gb|ADP17811.1| bacterial regulatory protein, LuxR family protein 10 [Achromobacter xylosoxidans A8] Length = 221 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 2/107 (1%) Query: 130 GYVIFTSEFLMLANEV-IIEAHGACY-QVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY+ S LA V ++ A G CY Q + R LT+R+ LQL Sbjct: 100 GYMPKASSPDALAAAVSLVMAGGECYPQPAARPQGASHPPTQELRELTQRQEEILQLLVQ 159 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EI +++G+SV TV ++ + KL+A N+ +A A++ G + Sbjct: 160 GKTMREIGQQVGISVATVKSHARTLYWKLNARNQAEAAYIAVQMGLV 206 >gi|317128969|ref|YP_004095251.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315473917|gb|ADU30520.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 199 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 4/105 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 NGY++ S LAN I + A ++ EL + S + LTERE L DG Sbjct: 97 NGYMLKDSPSDELANA--IRSVMAGRRIYAS--ELVDEVYSESNPLTEREREVLVHMADG 152 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++EIA L L+ TV Y+ + KL+ NRI+AI K G+ Sbjct: 153 KSTKEIANILHLTNGTVRNYISTILDKLEVGNRIEAITKVKEKGW 197 >gi|268317984|ref|YP_003291703.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] gi|262335518|gb|ACY49315.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] Length = 218 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L +GYTS EIAE+L +S TV + + KLD ++ + I A++ G Sbjct: 152 TLTDRERQILHLTAEGYTSREIAERLFISPRTVEKHRENLMAKLDIHSQAELIHYAVQRG 211 Query: 233 YI 234 + Sbjct: 212 LV 213 >gi|307153141|ref|YP_003888525.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306983369|gb|ADN15250.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 220 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G+T++EIAE+L ++V TV ++ + KLD +R A AI+ G Sbjct: 159 LTKRELEILALIATGHTNQEIAERLQITVGTVRVHVHTILQKLDVRDRTSAAVLAIQKGL 218 Query: 234 I 234 + Sbjct: 219 V 219 >gi|311105414|ref|YP_003978267.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310760103|gb|ADP15552.1| bacterial regulatory protein, LuxR family protein 6 [Achromobacter xylosoxidans A8] Length = 218 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 8/108 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN-----LT 175 LG +GY + L+ + + A G + +++ L+L +R+ A + LT Sbjct: 91 LGAGAHGYCHGYASAASLSQALEVVASGGIWMGRSLVSRLLKLVAERAQDAHSWDGGVLT 150 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ERE + + A G + +IAE LG++ TV A+L + KL +R+Q Sbjct: 151 EREITVARYASSGQANAQIAEALGITERTVKAHLSAVFEKLGVTDRLQ 198 >gi|300744173|ref|ZP_07073192.1| DNA-binding response regulator [Rothia dentocariosa M567] gi|300379898|gb|EFJ76462.1| DNA-binding response regulator [Rothia dentocariosa M567] Length = 208 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 5/107 (4%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGD 187 +G+V+ LA V A G +V+ L E K + S+ LT RET L+ A Sbjct: 106 SGFVVKDGTASQLAQAVRRTAAG--LRVVDSVLAEEAKWQGSS--PLTGRETEVLRAAET 161 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +EIA LGLS TV +L +A K+DA+NR +A+ A G++ Sbjct: 162 AGSVKEIAGMLGLSSGTVRNHLSAAMAKIDAINRHEAVRIARDNGWL 208 >gi|290957234|ref|YP_003488416.1| response regulator [Streptomyces scabiei 87.22] gi|260646760|emb|CBG69857.1| putative response regulator [Streptomyces scabiei 87.22] Length = 241 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 37/75 (49%), Gaps = 6/75 (8%) Query: 166 KRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +RS A R L RE L+L +G + EIA KL S TV + T +L Sbjct: 167 QRSVAGRTGAPLSGLVPREIDVLRLVAEGMDTGEIASKLSYSERTVKNVMHGLTTRLHLR 226 Query: 220 NRIQAIAKAIRFGYI 234 NR A+A A+R GYI Sbjct: 227 NRAHAVAYALREGYI 241 >gi|12620901|gb|AAG61130.1|AF330019_1 AHL receptor [Burkholderia multivorans] Length = 239 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 163 LFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + K S AR LT RE L +G T+ EI + L +S TVN ++ + KL A N+ Sbjct: 164 VVPKLSPEARVALTAREREVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNK 223 Query: 222 IQAIAKAIRFGYI 234 +QA+ KAI G I Sbjct: 224 VQAVVKAISAGLI 236 >gi|323489900|ref|ZP_08095122.1| transcriptional regulatory protein degU (protease production enhancer protein) [Planococcus donghaensis MPA1U2] gi|323396407|gb|EGA89231.1| transcriptional regulatory protein degU (protease production enhancer protein) [Planococcus donghaensis MPA1U2] Length = 224 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE+ LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI+ G+ Sbjct: 161 LTKRESEVLQLLTDGQSNRVIGETLFISEKTVKNHVSSILQKMQVNDRTQAVVTAIKNGW 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|322836842|ref|YP_004210756.1| LuxR family transcriptional regulator [Acidobacterium sp. MP5ACTX9] gi|321165929|gb|ADW71629.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 207 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 3/105 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GY++ +A V AHG + + D + S+ A LTERE L+ AG+G Sbjct: 106 GYLLKDCPSTEMAEAVRRVAHG---ERVIDPGLAAESWSADAGPLTEREREVLRRAGEGE 162 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ E+A L L+ T+ YL A KL A NR +A A G++ Sbjct: 163 STAELARTLRLTEGTIRNYLSEAISKLGAHNRTEAARLARAKGWL 207 >gi|269127816|ref|YP_003301186.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312774|gb|ACY99148.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 201 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 41/71 (57%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F + ++A LT RE L+LAG+G + +IA+ L L++ TV +L K+ A NR+ Sbjct: 131 FAELAAADSPLTPRELEVLRLAGEGASVAQIADTLVLTIGTVRNHLSRINRKIGARNRVH 190 Query: 224 AIAKAIRFGYI 234 AI A G++ Sbjct: 191 AIRIAESAGWL 201 >gi|284034369|ref|YP_003384300.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283813662|gb|ADB35501.1| transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 199 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ G T++EIA L LS TV YL K A +RI+AI KA G+ Sbjct: 139 LTDRECEVLRQVTTGATAQEIARTLSLSAGTVRNYLSRILTKTGARSRIEAIRKAQDAGW 198 Query: 234 I 234 I Sbjct: 199 I 199 >gi|218660024|ref|ZP_03515954.1| LuxR family transcriptional regulator [Rhizobium etli IE4771] Length = 118 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 34/56 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +L+ RE CL++ G+ +++I+ +L +S+ V YL SA KL +A+AKA Sbjct: 57 HLSRRELQCLEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEAVAKA 112 >gi|320008377|gb|ADW03227.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 202 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 34/66 (51%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + A L RE L+L +G + EIA KL S TV + T +L NR A+A A Sbjct: 137 ATASGLAPREVDVLRLVAEGMDTGEIASKLSYSERTVKNVMHGLTTRLQLRNRAHAVAYA 196 Query: 229 IRFGYI 234 +R GYI Sbjct: 197 LREGYI 202 >gi|229131218|ref|ZP_04260124.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196] gi|228652209|gb|EEL08140.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196] Length = 214 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 11/115 (9%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--------RNLTER 177 +GY++ E +A ++ G + +E KK A + LTER Sbjct: 95 SGYLLKDMETDAIAQAILTVHSGGVVLPQDITAQIIEELKKTKVAVECNPPEQLKQLTER 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 155 EVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 >gi|171909840|ref|ZP_02925310.1| NarL subfamily protein [Verrucomicrobium spinosum DSM 4136] Length = 216 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Query: 163 LFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L +K +++ N LT RE L+L G +++EIA L +S TV +L S KLD ++ Sbjct: 141 LVEKLAASVSNEPLTRREQEVLELLARGRSNKEIASTLSISEPTVKTHLRSLFGKLDVLS 200 Query: 221 RIQAIAKAIRFGYI 234 R +AIA A R G + Sbjct: 201 RTEAIAVASRKGLV 214 >gi|307711412|ref|ZP_07647828.1| response regulator [Streptococcus mitis SK321] gi|307616785|gb|EFN95969.1| response regulator [Streptococcus mitis SK321] Length = 210 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 2/97 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY++ TS L + V A G A Q ++ +E + +LT RE LQL Sbjct: 99 GYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQLIAK 158 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA++L +S+ TV ++ + KL+ +R QA Sbjct: 159 GYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|239939692|ref|ZP_04691629.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239986176|ref|ZP_04706840.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291443118|ref|ZP_06582508.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346065|gb|EFE72969.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 216 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE + L+L G ++ EIA L + + TV +++ S KL A +R QA+ A G+ Sbjct: 153 LTDREAAVLRLMARGMSNAEIAADLVVGIQTVKSHVSSVLAKLGARDRTQAVIAAYESGF 212 Query: 234 IC 235 + Sbjct: 213 VA 214 >gi|229165197|ref|ZP_04292990.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621] gi|228618295|gb|EEK75327.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621] Length = 214 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 11/115 (9%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--------RNLTER 177 +GY++ E +A ++ G + +E KK A + LTER Sbjct: 95 SGYLLKDMETDAIAQAILTVHSGGVVLPQDITAQIIEELKKTKVAVECNPPEQLKQLTER 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 155 EVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 >gi|117925383|ref|YP_866000.1| LuxR family transcriptional regulator [Magnetococcus sp. MC-1] gi|117609139|gb|ABK44594.1| two component transcriptional regulator, LuxR family [Magnetococcus sp. MC-1] Length = 206 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 2/107 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GYV+ + F L + ++ A G + +V+ + + ++ L+ RE ++L D Sbjct: 100 GYVVKDNAFSELLDAILAVAAGKRFVSEVVAEKVNELERLDDLPVQLSPREKEVVRLVAD 159 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIA LG+S TV+ + KL+ + A+R G + Sbjct: 160 GQTNKEIARSLGISPKTVDTHRTRLMRKLNLHTTADVVRYAMRMGLV 206 >gi|325977247|ref|YP_004286963.1| nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177175|emb|CBZ47219.1| Nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 203 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +TE++ LQ+ DG T++EIA +L ++ TV YL NR QAIA AIR Sbjct: 143 ITEQQKQLLQMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAYAIRHNL 202 Query: 234 I 234 I Sbjct: 203 I 203 >gi|319793774|ref|YP_004155414.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596237|gb|ADU37303.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 264 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L GY +EEIA +L +S TVNA++ + KL A R QA++ A G Sbjct: 204 LSAREREVLRLVATGYVTEEIALQLTISAQTVNAHVKNIYRKLHAHTRAQAVSFASHRGL 263 Query: 234 I 234 + Sbjct: 264 L 264 >gi|311112763|ref|YP_003983985.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] gi|310944257|gb|ADP40551.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] Length = 208 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 56/107 (52%), Gaps = 5/107 (4%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGD 187 +G+V+ LA V A G +V+ L E K + S+ LT RET L+ A Sbjct: 106 SGFVVKDGTASQLAQAVRRTAAG--LRVVDSVLAEEAKWQGSSP--LTGRETEVLRAAET 161 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +EIA LGLS TV +L +A K+DA+NR +A+ A G++ Sbjct: 162 AGSVKEIAGMLGLSSGTVRNHLSAAMAKIDAINRHEAVRIARDNGWL 208 >gi|226312803|ref|YP_002772697.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095751|dbj|BAH44193.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 228 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE LQ DGY +++IA+ L +S TV ++ K+ +R QA+AKA+R Sbjct: 167 LTDRELDVLQQIADGYRNDQIAQNLFISEGTVKTHVHRILQKMGVEDRTQAVAKALRHKI 226 Query: 234 I 234 + Sbjct: 227 V 227 >gi|29829674|ref|NP_824308.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29606783|dbj|BAC70843.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 204 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ A DG T+ E+A L LS TV YL +A KL NR +A+ A G+ Sbjct: 144 LTDREREVLRAAADGATNAELATALHLSQGTVRNYLSTAIQKLAVRNRTEAVRTARDKGW 203 Query: 234 I 234 + Sbjct: 204 L 204 >gi|89093728|ref|ZP_01166675.1| two-component transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] gi|89082124|gb|EAR61349.1| two-component transcriptional regulator, LuxR family protein [Oceanospirillum sp. MED92] Length = 303 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 32/58 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +TERE+ L +G T+ EIAE LG+S TVN +L KL NR A A+R Sbjct: 241 ITERESEVLHWIANGKTNREIAEILGMSPRTVNKHLEQLFPKLGVENRTAAAGVALRI 298 >gi|307610855|emb|CBX00470.1| hypothetical protein LPW_21881 [Legionella pneumophila 130b] Length = 191 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 15/118 (12%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK---------------RSSAAR 172 KN ++F + A E ++ G +++ LF K +S+ Sbjct: 71 KNDQMLFEHGESLSAYEHVLRHDGTIVNIVSKKSPLFDKELNLIGLVGFSIELPQSNVIH 130 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE + L L +GYT ++ A+KLG+S TV A++ ++ KL R + IA+ R Sbjct: 131 ILTPREYNTLLLLSEGYTDKQTAKKLGISPRTVEAHINNSKQKLGIKTRAELIAQFSR 188 >gi|300914706|ref|ZP_07132022.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X561] gi|307724060|ref|YP_003903811.1| LuxR family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|320115614|ref|YP_004185773.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|300889641|gb|EFK84787.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X561] gi|307581121|gb|ADN54520.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X513] gi|319928705|gb|ADV79390.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 205 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 36/58 (62%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + ++LT RE L+L GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 135 QETLKKDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQA 192 >gi|229055057|ref|ZP_04195489.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603] gi|228721329|gb|EEL72853.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603] Length = 214 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 11/115 (9%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--------RNLTER 177 +GY++ E +A ++ G + +E KK A + LTER Sbjct: 95 SGYLLKDMETDAIAQAILTVHSGGVVLPQDITAQIIEELKKTKVAVECNPPEQLKQLTER 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 155 EVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 >gi|218441961|ref|YP_002380290.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218174689|gb|ACK73422.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 210 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL+ERE L+L +G ++ EIAE+L LS +T+ ++ KL +R+QA A+R G Sbjct: 149 NLSERELEVLKLIVEGKSNNEIAEELYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSG 208 Query: 233 YI 234 + Sbjct: 209 IV 210 >gi|223935792|ref|ZP_03627707.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895393|gb|EEF61839.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 225 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Query: 160 FLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L F +++S N L+ RE LQ G +EIAE++GLS HTVN YL KL Sbjct: 142 VLGAFAQQNSTPHNDYGLSAREKDILQYMVKGLIKKEIAEEMGLSYHTVNNYLRRIYDKL 201 Query: 217 DAVNRIQAIAKAI 229 R A+AK + Sbjct: 202 HVHTRGGAVAKTV 214 >gi|4103042|gb|AAD12726.1| transcriptional activator [Burkholderia cepacia] Length = 239 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +A LT R+ L +G T+ EI + L +S TVN ++ + KL A N++QA Sbjct: 167 KLSPAAGVTLTARDREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQA 226 Query: 225 IAKAIRFGYI 234 + KAI G I Sbjct: 227 VVKAISAGLI 236 >gi|16331237|ref|NP_441965.1| response regulator like-protein [Synechocystis sp. PCC 6803] gi|1001413|dbj|BAA10035.1| response regulator like protein [Synechocystis sp. PCC 6803] Length = 89 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 39/62 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L L G T++E++E+L +S TV+ ++ + K + NR++ + A+++G Sbjct: 12 LSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWALQWGK 71 Query: 234 IC 235 +C Sbjct: 72 VC 73 >gi|21218963|ref|NP_624742.1| two-component response regulator [Streptomyces coelicolor A3(2)] gi|6138889|emb|CAB59718.1| putative two-component response regulator [Streptomyces coelicolor A3(2)] Length = 219 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 6/96 (6%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAE 196 A + ++ A A +IT FL+ R+S LT RE L DG + +EIA Sbjct: 119 AGDALLSA-AATRSLITRFLDSPDPRASPVPPEDLAALTAREREVTALVADGKSDKEIAA 177 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L LS TV ++ A KL A +R Q +A A R G Sbjct: 178 ELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRSG 213 >gi|325288921|ref|YP_004265102.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324964322|gb|ADY55101.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 227 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 163 LFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +F+K +S N LT RE CL+L +G ++EIAE+LG++ TV ++G+ KL Sbjct: 154 VFQKSNSNIINDTTLLTSREKDCLKLICEGLRNKEIAEELGITNRTVEYHVGNILEKLGV 213 Query: 219 VNRIQAIAK 227 +R++A+ K Sbjct: 214 KSRLEALLK 222 >gi|299821874|ref|ZP_07053762.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299817539|gb|EFI84775.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 241 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI+ G+ Sbjct: 178 LTHRECEVLQLLTDGKSNRSIGEALFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGW 237 Query: 234 I 234 + Sbjct: 238 V 238 >gi|218674909|ref|ZP_03524578.1| transcriptional activator protein [Rhizobium etli GR56] Length = 241 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE CL++ G +++I +L +SV V YL SA KL +A+AKA Sbjct: 180 QLSRRELQCLEMTASGLMAKQICARLSISVSAVQLYLASARRKLTVATTSEAVAKA 235 >gi|218462779|ref|ZP_03502870.1| probable transcriptional regulator protein [Rhizobium etli Kim 5] Length = 229 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT +E CL+L +GY+++ IA L L +K A NR QAIAKA+ G Sbjct: 166 SLTPQEKRCLELMAEGYSTQRIARALDLKHDETRDLEAGIILKFRANNRFQAIAKAVLLG 225 Query: 233 YI 234 + Sbjct: 226 IV 227 >gi|254249338|ref|ZP_04942658.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] gi|124875839|gb|EAY65829.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] Length = 288 Score = 44.7 bits (104), Expect = 0.010, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L DG T+ EI G++ TV +L +A VKLDA+N+ A KA G Sbjct: 226 GLTLREREVLAWTADGKTAYEIGMIFGIAERTVKFHLQNAVVKLDAMNKTHAATKAAMLG 285 Query: 233 YI 234 + Sbjct: 286 LL 287 >gi|329731507|gb|EGG67870.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus 21193] Length = 209 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 53/109 (48%), Gaps = 3/109 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLA 185 + Y++ T+ +A+ V + G +V+ KKR+ LTERE L L Sbjct: 100 DSYILKTTSAKDIADAVHKTSSGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLI 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 160 AKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|289168573|ref|YP_003446842.1| response regulator [Streptococcus mitis B6] gi|288908140|emb|CBJ22981.1| response regulator [Streptococcus mitis B6] Length = 210 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS L + V A G A Q ++ +E + +LT RE LQL Sbjct: 98 KGYMLKTSSADELLHAVRKVAAGKLAIEQEVSKKVEYHRNHIELHEDLTARERDVLQLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA++L +S+ TV ++ + KL+ +R QA Sbjct: 158 KGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|302561410|ref|ZP_07313752.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302479028|gb|EFL42121.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 188 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 34/62 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE L L DG + EIA L LS TV ++ + +KLD +R QA A+R Sbjct: 124 AGALTEREREVLGLIADGRANREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVR 183 Query: 231 FG 232 G Sbjct: 184 HG 185 >gi|171322367|ref|ZP_02911189.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171092309|gb|EDT37680.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 239 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G Sbjct: 175 TLTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIAAG 234 Query: 233 YI 234 I Sbjct: 235 LI 236 >gi|126665152|ref|ZP_01736135.1| ATP-dependent transcriptional regulator, MalT related, LuxR family protein [Marinobacter sp. ELB17] gi|126630522|gb|EBA01137.1| ATP-dependent transcriptional regulator, MalT related, LuxR family protein [Marinobacter sp. ELB17] Length = 970 Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A ++ERE L+ G +++E+A+KL +S+HTV + KL +R QAI +A Sbjct: 907 AEPISEREKGVLECIARGLSNQEVADKLHISLHTVKTHARRINAKLGVKSRTQAIVRARE 966 Query: 231 FGYI 234 G + Sbjct: 967 LGVL 970 >gi|218659851|ref|ZP_03515781.1| probable transcriptional regulator protein [Rhizobium etli IE4771] Length = 230 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT +E CL+L +GY+++ IA L L +K A NR QAIAKA+ G Sbjct: 167 SLTPQEKRCLELMAEGYSTQRIARALDLKHDETRDLEAGIILKFRANNRFQAIAKAVLLG 226 Query: 233 YI 234 + Sbjct: 227 IV 228 >gi|220916020|ref|YP_002491324.1| transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953874|gb|ACL64258.1| transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 208 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 8/72 (11%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT----VNAYLGSATVKLDAVNRIQ 223 + A LT RE L L +G ++ IA +LG+S HT VNA LG KL A +R + Sbjct: 140 AEAGGPLTPREREVLALVAEGLGNKAIAGRLGISEHTAKFHVNAILG----KLGAGSRAE 195 Query: 224 AIAKAIRFGYIC 235 AI +A R G + Sbjct: 196 AIVRAARLGLVV 207 >gi|134097815|ref|YP_001103476.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005549|ref|ZP_06563522.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910438|emb|CAM00551.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 217 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ S+ R+LTERE L G+G ++ +IAE+L LS TV ++ KL NR QA Sbjct: 146 QRASALVRDLTEREREVLACLGEGLSNAQIAERLFLSEATVKGHVSRTMTKLRCTNRTQA 205 >gi|253987735|ref|YP_003039091.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638613|emb|CAR67232.1| similar to probable transcription regulator sdia of escherichia coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779185|emb|CAQ82345.1| similar to probable transcription regulator SdiA of Escherichia coli [Photorhabdus asymbiotica] Length = 242 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + + RE L+ DG S EIA + ++ TV+ +L + KL N+ QAIAKA G Sbjct: 181 SFSHRELEVLRYTADGMISSEIASTICVTKSTVDFHLMNIVKKLGCRNKFQAIAKAALLG 240 Query: 233 YI 234 YI Sbjct: 241 YI 242 >gi|187779787|ref|ZP_02996260.1| hypothetical protein CLOSPO_03383 [Clostridium sporogenes ATCC 15579] gi|187773412|gb|EDU37214.1| hypothetical protein CLOSPO_03383 [Clostridium sporogenes ATCC 15579] Length = 865 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 46/85 (54%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L N+ IE I + +++ + A LTERE +++ +G ++++I E+L + Sbjct: 770 LKNDKDIELTSKEDNFIKNLIDIMEPEKIKAELLTEREKEVMEILFEGASNKQIGERLNI 829 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAI 225 S+ TV ++ + KL NR+QA+ Sbjct: 830 SLATVKTHMINIYSKLQVSNRVQAV 854 >gi|297564113|ref|YP_003683086.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848562|gb|ADH70580.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 223 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+ A DG T IA L L+ TV YL +A K A NR+ AI A G+ Sbjct: 163 LTDRETEVLRAASDGATVARIAAALHLTEGTVRNYLSNAIGKTGADNRMSAIRTAQDMGW 222 Query: 234 I 234 + Sbjct: 223 L 223 >gi|158333495|ref|YP_001514667.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158303736|gb|ABW25353.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 225 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 11/117 (9%) Query: 129 NGYVIFTSEFLM---------LANEVIIEAHGAC-YQVITDFLELFKKRSSAARNLTERE 178 +GYV F S+ M L NEV + A + F E +S +LT RE Sbjct: 109 DGYV-FKSQLAMNLHQAIQTVLKNEVFLPPDAATGFFRSFHFYEGRAVQSEQTLHLTARE 167 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G +++ IA L +++ TV A+L + KL+ +R QAI KA++ G + Sbjct: 168 KQVLHWLVQGASNQAIANHLHITIATVKAHLTAVFEKLEVKSRSQAIVKALKLGLVT 224 >gi|73537441|ref|YP_297808.1| LuxR transcriptional regulator [Ralstonia eutropha JMP134] gi|72120778|gb|AAZ62964.1| regulatory protein, LuxR:Tetratricopeptide TPR_4 [Ralstonia eutropha JMP134] Length = 947 Score = 44.7 bits (104), Expect = 0.011, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E LQL +G+++ +A++L +S TV +L + + KL A NR QA+A A + G Sbjct: 887 LTPKEQKVLQLLAEGFSNVAMAQRLFVSETTVRTHLRNISAKLHASNRTQAVAIARQLGL 946 Query: 234 I 234 + Sbjct: 947 L 947 >gi|332527516|ref|ZP_08403568.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332111923|gb|EGJ11901.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 214 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE+ L GYT EI +LGLS HT+ Y+ KL+ +R +A +A R G Sbjct: 152 QLTDRESEVLLRVAKGYTLPEIGVQLGLSRHTIADYVKQIYRKLNVSSRAEAALEAQRLG 211 >gi|295680777|ref|YP_003609351.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440672|gb|ADG19840.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 222 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L + DG ++EIA +L +S +TV +L S KL A NR +A+ +R G+ Sbjct: 160 LTLREIEVLAMLADGLGNKEIARQLDISDNTVKFHLSSIFGKLGATNRTEAVMLGMRHGF 219 Query: 234 I 234 I Sbjct: 220 I 220 >gi|229009717|ref|ZP_04166941.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048] gi|228751597|gb|EEM01399.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048] Length = 214 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 11/115 (9%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--------RNLTER 177 +GY++ E +A ++ G + +E KK A + LTER Sbjct: 95 SGYLLKDMETDAIAQAILTVYSGGVVLPQDITAQIIEELKKTKVAVECNPPEQLKQLTER 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 155 EVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 >gi|70726587|ref|YP_253501.1| hypothetical protein SH1586 [Staphylococcus haemolyticus JCSC1435] gi|68447311|dbj|BAE04895.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 200 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 4/72 (5%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LFK+ A LT +E L+ G+G +++E+A+KL LS TV Y + KL+A NR Sbjct: 133 LFKE----ANPLTHKEQVVLREIGEGLSNKEVADKLYLSNGTVRNYTSNIIDKLEAENRF 188 Query: 223 QAIAKAIRFGYI 234 A KA G+I Sbjct: 189 DAWKKANEKGWI 200 >gi|19553757|ref|NP_601759.1| regulatory-like protein [Corynebacterium glutamicum ATCC 13032] gi|62391399|ref|YP_226801.1| LuxR family regulatory protein [Corynebacterium glutamicum ATCC 13032] gi|145296555|ref|YP_001139376.1| hypothetical protein cgR_2464 [Corynebacterium glutamicum R] gi|21325332|dbj|BAB99953.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032] gi|41326740|emb|CAF21222.1| Bacterial regulatory protein, LuxR family [Corynebacterium glutamicum ATCC 13032] gi|140846475|dbj|BAF55474.1| hypothetical protein [Corynebacterium glutamicum R] Length = 281 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 11/104 (10%) Query: 136 SEFLMLANEVIIEA-----HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 S+ MLAN V E C Q++T R L+ RE L G+T Sbjct: 183 SKLRMLANRVTDEDLRRDLEELCDQMVTPV------RIKQTTKLSARELDVLACVALGHT 236 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E AE++G+ TV +YL S KL A R +A+ A R G + Sbjct: 237 NVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 280 >gi|294101416|ref|YP_003553274.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] gi|293616396|gb|ADE56550.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] Length = 211 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 1/107 (0%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G+++ TS L + G Y + ++ + R +L+ RE L LA G Sbjct: 100 RGFILKTSTPQDLIRAIQTVVQGGLY-LDSEVATVVGDRELVPESLSAREREVLVLASKG 158 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +S+E+A +L +S TV +L S KL A N+ +A+ A+++G + Sbjct: 159 LSSKEVAAELFISERTVQTHLASIYDKLGARNKTEALLLALKYGVVT 205 >gi|284041733|ref|YP_003392073.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945954|gb|ADB48698.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 225 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G ++ ++A++L L+VHTV ++ KL +R QA+ A G+ Sbjct: 160 LTEREAEILRLVARGMSNADVADELVLAVHTVKTHVARILAKLAVRDRTQAVVVAYESGF 219 Query: 234 I 234 + Sbjct: 220 V 220 >gi|269926224|ref|YP_003322847.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789884|gb|ACZ42025.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 218 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTS-EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 KKR A LT+RE L+L G TS +EIAE+L LS TV +L + KL NR Q Sbjct: 143 KKRPDA--ELTDREREILELLVQGITSNKEIAERLFLSESTVKYHLHNILNKLHLQNRAQ 200 Query: 224 AIAKAIRFGYI 234 +A A++ G I Sbjct: 201 VVAYALQHGLI 211 >gi|300864647|ref|ZP_07109505.1| LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] gi|300337396|emb|CBN54653.1| LuxR family transcriptional regulator [Oscillatoria sp. PCC 6506] Length = 91 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 40/68 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE ++L G T++EIA+KL +S TV+ ++ + K NR+ + Sbjct: 6 SHTSVTLSDRELQVVELVAAGLTNQEIADKLDISKRTVDNHMSNILTKTATGNRVALVRW 65 Query: 228 AIRFGYIC 235 A+++G +C Sbjct: 66 AMQWGKVC 73 >gi|227497679|ref|ZP_03927892.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226832874|gb|EEH65257.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 211 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+LAG G + IA L L TV YL SA K + NR++A A G+ Sbjct: 151 LTEREREVLRLAGKGLDAPHIAAHLSLGEGTVRNYLSSAIAKTGSRNRVEAARTAESNGW 210 Query: 234 I 234 + Sbjct: 211 L 211 >gi|254443406|ref|ZP_05056882.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198257714|gb|EDY82022.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 224 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 E H + E ++RS + LTERE L+ G +++EIA L LS TV + Sbjct: 136 EVHEGISSLPRQVAERLEERSKR-QQLTERERDVLEYLIKGRSNKEIASSLYLSEETVKS 194 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L S KL +R +A +AIR G + Sbjct: 195 HLKSLFAKLKVRDRTEAAIEAIRHGIV 221 >gi|256790030|ref|ZP_05528461.1| two-component response regulator [Streptomyces lividans TK24] gi|289773911|ref|ZP_06533289.1| two-component system response regulator [Streptomyces lividans TK24] gi|289704110|gb|EFD71539.1| two-component system response regulator [Streptomyces lividans TK24] Length = 223 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 6/96 (6%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAE 196 A + ++ A A +IT FL+ R+S LT RE L DG + +EIA Sbjct: 123 AGDALLSA-AATRSLITRFLDSPDPRASPVPPEDLAALTAREREVTALVADGKSDKEIAA 181 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L LS TV ++ A KL A +R Q +A A R G Sbjct: 182 ELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRSG 217 >gi|307151762|ref|YP_003887146.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981990|gb|ADN13871.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 210 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL+ERE L+L +G ++ EIAE+L LS +T+ ++ KL +R+QA A+R G Sbjct: 149 NLSERELEVLKLIVEGKSNNEIAEELYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSG 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|86606978|ref|YP_475741.1| LuxR family transcriptional regulator [Synechococcus sp. JA-3-3Ab] gi|86555520|gb|ABD00478.1| transcriptional regulator, LuxR family [Synechococcus sp. JA-3-3Ab] Length = 87 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 38/62 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L G T+++IAE+L +S TV+ ++ + K NR+ + A+++G Sbjct: 11 LSERELQVLELIAAGLTNQDIAERLEISKRTVDNHISNILSKTRTSNRVALVRWALQWGK 70 Query: 234 IC 235 +C Sbjct: 71 VC 72 >gi|78060780|ref|YP_367355.1| two component LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77965330|gb|ABB06711.1| two component transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 209 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 7/120 (5%) Query: 122 VRLGFHKN--GYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN--L 174 VR F + GYV ++ L + + I +G Y V+ D ++AAR L Sbjct: 90 VRSAFAQGAMGYVPKSASPRTLLSAIRIALNGERYVPPLVLDDPALQHPDGAAAARGSML 149 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+R+ L+ +G ++ IA+KLGLS T+ A++ + L+ +NR QA A + G I Sbjct: 150 TQRQIEVLRYLAEGVPNKVIADKLGLSEKTIKAHITAIFKALNVINRTQAAAAGRKAGLI 209 >gi|156741214|ref|YP_001431343.1| LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232542|gb|ABU57325.1| transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 204 Score = 44.7 bits (104), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++++IA+KL +S HTV +L S KL +R +A+ + R G Sbjct: 142 LTARERDVLELVSQGLSNKQIAQKLHISEHTVKFHLSSLFAKLGVSSRTEAVNRGARQGI 201 Query: 234 IC 235 I Sbjct: 202 IT 203 >gi|56421685|ref|YP_149003.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56381527|dbj|BAD77435.1| two-component response regulator (extracellular proteinase response regulator) [Geobacillus kaustophilus HTA426] Length = 224 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ S KL+ +R QA+ AI+ G+ Sbjct: 161 LTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSSILQKLNVNDRTQAVVVAIKNGW 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|311900673|dbj|BAJ33081.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 194 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 35/64 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R +T+RE L L G G ++ EIAE L ++ TV AY+ KLDA +R+ + A Sbjct: 127 RGITDREREVLTLIGRGLSNAEIAEALFITAATVKAYVTRLLAKLDARDRVHLVITAYEH 186 Query: 232 GYIC 235 G + Sbjct: 187 GLVS 190 >gi|306825821|ref|ZP_07459160.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432182|gb|EFM35159.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 210 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 3/107 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGAKGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|291442824|ref|ZP_06582214.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291345771|gb|EFE72675.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 223 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 149 AHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + G ++I +F K+ ++AA LTERE + L G G ++EEIA +L +S T Sbjct: 130 SPGVTRRLIAEFAARSKEPTAAASLALLTEREREVMALVGIGLSNEEIARRLVVSPLTAK 189 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ VKL A +R Q + A G + Sbjct: 190 THVSRTMVKLGARDRAQLVVLAYESGLV 217 >gi|302555756|ref|ZP_07308098.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302473374|gb|EFL36467.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 221 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I ++L+ + LT RE L+L +G++S+EIAE L +S+ TV+ + Sbjct: 135 GAVTALIRNYLDRVRHGEEPPEQILTPREEEVLKLVAEGHSSKEIAEMLFISIKTVHRHR 194 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G I Sbjct: 195 ANLLHKLGLRDRLELTRYAIRAGLI 219 >gi|322377077|ref|ZP_08051569.1| DNA-binding response regulator VraR [Streptococcus sp. M334] gi|321281790|gb|EFX58798.1| DNA-binding response regulator VraR [Streptococcus sp. M334] Length = 210 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 2/97 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY++ TS L + V A G A Q ++ +E + +LT RE LQL Sbjct: 99 GYMLKTSSADELLHAVRKVATGELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQLIAK 158 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA++L +S+ TV ++ + KL+ +R QA Sbjct: 159 GYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|298247821|ref|ZP_06971626.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550480|gb|EFH84346.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 201 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 29/67 (43%), Positives = 38/67 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + LTERE + L A +G + +IA KL LS TV YL A KL NRI+A K Sbjct: 135 SEGSNPLTERERTVLAAATEGASIAQIAAKLFLSEGTVRNYLSVAIQKLGVRNRIEAARK 194 Query: 228 AIRFGYI 234 A + G++ Sbjct: 195 AEQKGWL 201 >gi|182416302|ref|YP_001821368.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177843516|gb|ACB77768.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 256 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 43/73 (58%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L +++S+ +LTERE L + GDG +++ +E+LG+S +TV + S KLD + Sbjct: 137 LKERKSTTLEDLTEREQVVLSVIGDGSDNKQASERLGISRYTVLTHRESIMRKLDLHHSR 196 Query: 223 QAIAKAIRFGYIC 235 + + A+ GY+ Sbjct: 197 ELMQYALVHGYVV 209 >gi|331696989|ref|YP_004333228.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951678|gb|AEA25375.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 237 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G ++ EIA +L +S TV +++ K+DA +R QA+A A R G Sbjct: 163 GLTAREAEVLTLVAEGLSNAEIARRLVVSEGTVKSHMNHLLAKIDARDRAQAVAFAYRNG 222 Query: 233 YIC 235 + Sbjct: 223 LVA 225 >gi|288556565|ref|YP_003428500.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288547725|gb|ADC51608.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 210 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 163 LFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L KK + AA + +T RE + ++L G+G +++EI+E+L LSV T+ ++ + KL + Sbjct: 137 LMKKTNDAAVDPAITPRELAIMKLVGEGLSNKEISEELSLSVGTIKNHISAILDKLSLRD 196 Query: 221 RIQAIAKAIRFGYI 234 R Q AIR + Sbjct: 197 RTQLAIYAIRHNVV 210 >gi|302533688|ref|ZP_07286030.1| two-component system response regulator [Streptomyces sp. C] gi|302442583|gb|EFL14399.1| two-component system response regulator [Streptomyces sp. C] Length = 219 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 157 SLTDREREVLGLIADGRSNREIARTLVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 216 >gi|121604753|ref|YP_982082.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120593722|gb|ABM37161.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 262 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+L GYTS EI +L +S TVN ++ + KL+ R QA++ A G Sbjct: 202 LSEREKQVLKLVASGYTSTEIGSRLIISGQTVNTHIKNIYRKLNVRTRAQAVSFAASRG 260 >gi|308178660|ref|YP_003918066.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307746123|emb|CBT77095.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 201 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 38/78 (48%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + D + + A LTERE L LA G +IA + LS TV +L +A K Sbjct: 124 VVDPQRAMRSVGAEANPLTEREREILGLAAAGAPVSQIASGVHLSAGTVRNHLSNAIGKT 183 Query: 217 DAVNRIQAIAKAIRFGYI 234 + NRI+A +A G+I Sbjct: 184 NTANRIEAARRAREMGWI 201 >gi|257899016|ref|ZP_05678669.1| regulatory protein [Enterococcus faecium Com15] gi|257836928|gb|EEV62002.1| regulatory protein [Enterococcus faecium Com15] Length = 210 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 5/110 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--RNLTERETSCLQL 184 GY++ TS +A+ + G +V T +E +R+ LT RE L L Sbjct: 100 GYLLKTSTAHEIADAIRATQRGERVLEPEVTTKMMEKMSRRNEPVLHEELTNRENEILML 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++EIA++L +++ TV ++ + KL+ +R QA A + G + Sbjct: 160 ISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209 >gi|209550096|ref|YP_002282013.1| MerR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209535852|gb|ACI55787.1| transcriptional regulator, MerR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 230 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT +E CL+L +GY+++ IA L L +K A NR QAIAKA+ G Sbjct: 167 SLTPQERRCLELMAEGYSTQRIARALDLKHDETRDLEAGIILKFRANNRFQAIAKAVLLG 226 Query: 233 YI 234 + Sbjct: 227 IV 228 >gi|169827392|ref|YP_001697550.1| DNA-binding response regulator DegU [Lysinibacillus sphaericus C3-41] gi|168991880|gb|ACA39420.1| DNA-binding response regulator DegU [Lysinibacillus sphaericus C3-41] Length = 215 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 7/112 (6%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERETSCL 182 G++++ + + L + + + G Y I +L+LF + A T+RE L Sbjct: 82 GFILYNIKLIELTKAIDLISKGEYYFDSSSMTTFIKSYLKLFDSKKIIAHLFTKREYVIL 141 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +G +EI++ L +S ++ + KL R+QAI KAI+ +I Sbjct: 142 LMLAEGKDVQEISQNLNISKKSIKMNINKIYNKLSVKTRLQAIEKAIKNRWI 193 >gi|116252965|ref|YP_768803.1| nodulation protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257613|emb|CAK08710.1| putative nodulation protein [Rhizobium leguminosarum bv. viciae 3841] Length = 230 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT +E CL+L +GY+++ IA L L +K A NR QAIAKA+ G Sbjct: 167 SLTPQERRCLELMAEGYSTQRIARALDLKHDETRDLEAGIILKFRANNRFQAIAKAVLLG 226 Query: 233 YI 234 + Sbjct: 227 IV 228 >gi|108757533|ref|YP_632250.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108461413|gb|ABF86598.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK 1622] Length = 246 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 35/64 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L++RE LQL G ++ E A L LS T+ +L KL+ NR++A+ + IR Sbjct: 182 KPLSDREREILQLIAKGVSNSEAARLLDLSKATIRTHLEHIYRKLEVTNRVEAVTEGIRK 241 Query: 232 GYIC 235 G I Sbjct: 242 GLIS 245 >gi|329941768|ref|ZP_08291033.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299485|gb|EGG43385.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 221 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 9/115 (7%) Query: 129 NGYVIFTSEF--LMLANEVIIEAH-----GACYQVITDFLELFKKRSSAAR--NLTERET 179 +G+++ +E L+ A ++E G ++I +F K+ ++AA LTERE Sbjct: 101 SGFLVKDTEPAELLRAVRAVVEGDALLSPGVTRRLIAEFAARSKEPAAAASLARLTERER 160 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L G G ++EEIA +L +S T ++ VKL A +R Q + A G + Sbjct: 161 EVMALVGLGLSNEEIARRLVVSPLTAKIHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|327191456|gb|EGE58478.1| putative transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 230 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT +E CL+L +GY+++ IA L L +K A NR QAIAKA+ G Sbjct: 167 SLTSQERRCLELMAEGYSTQRIARALDLKHDETRDLEAGIILKFRANNRFQAIAKAVLLG 226 Query: 233 YI 234 + Sbjct: 227 IV 228 >gi|319892925|ref|YP_004149800.1| Two component transcriptional regulator VraR [Staphylococcus pseudintermedius HKU10-03] gi|317162621|gb|ADV06164.1| Two component transcriptional regulator VraR [Staphylococcus pseudintermedius HKU10-03] gi|323464027|gb|ADX76180.1| two-component response regulator VraR [Staphylococcus pseudintermedius ED99] Length = 209 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 42/80 (52%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ K+R+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKQRAELYELLTEREMEILLLISKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + G I Sbjct: 189 KLEVQDRTQAVIYAFQHGLI 208 >gi|282861654|ref|ZP_06270718.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563470|gb|EFB69008.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 210 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L A DG T +IA KL LS TV YL SA K NR++A+ A + G+ Sbjct: 150 LTARERDALNAAVDGATVADIAAKLHLSESTVRNYLSSAIGKTGTRNRMEAVRAARQQGW 209 Query: 234 I 234 + Sbjct: 210 L 210 >gi|85058263|ref|YP_453965.1| transcriptional activator protein [Sodalis glossinidius str. 'morsitans'] gi|84778783|dbj|BAE73560.1| transcriptional activator protein [Sodalis glossinidius str. 'morsitans'] Length = 245 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 32/57 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT RE L A G T EIA +G++ TV ++G+ VKLD +N AI KA Sbjct: 179 KRLTSREIEALHWASIGKTYREIAIIMGITESTVKFHIGNLIVKLDVINAKHAIKKA 235 >gi|227497785|ref|ZP_03927971.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226832785|gb|EEH65168.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 246 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G ++ EIA++L +S TV ++G+ KLD +R+QA+ A G Sbjct: 184 SLTPREREILVLIAQGMSNSEIADQLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETG 243 Query: 233 YIC 235 + Sbjct: 244 LMA 246 >gi|222096651|ref|YP_002530708.1| response regulator of salavaricin regulon [Bacillus cereus Q1] gi|221240709|gb|ACM13419.1| response regulator of salavaricin regulon [Bacillus cereus Q1] Length = 191 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F + LT E LQL DGY +EIA L S T++ ++ KL+ + ++ Sbjct: 117 FPTPTETIEELTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHIFDKLNVSSSLE 176 Query: 224 AIAKAIRFGYI 234 A+ K I+ GYI Sbjct: 177 AVTKGIKLGYI 187 >gi|307710534|ref|ZP_07646970.1| response regulator [Streptococcus mitis SK564] gi|307618687|gb|EFN97827.1| response regulator [Streptococcus mitis SK564] Length = 210 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS L + V A G A Q ++ +E + +LT RE LQL Sbjct: 98 KGYMLKTSSAGELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA++L +S+ TV ++ + KL+ +R QA Sbjct: 158 KGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|159902711|ref|YP_001550055.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9211] gi|159887887|gb|ABX08101.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9211] Length = 90 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S +L+ RE + L DG T++EIA++L +S TV+ ++ + K + NR+ + Sbjct: 8 NSGQMSLSAREMEIIDLVADGLTNQEIAQRLTISKRTVDNHVSNMFTKTGSKNRVALLNW 67 Query: 228 AIRFGYIC 235 A+ G IC Sbjct: 68 AMDHGKIC 75 >gi|323435982|ref|ZP_01049465.2| transcription regulator, LuxR/FixJ family [Dokdonia donghaensis MED134] gi|321496297|gb|EAQ39437.2| transcription regulator, LuxR/FixJ family [Dokdonia donghaensis MED134] Length = 537 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S + NL++RET L G+T+++I E L +S+ TV + + KLD NR + I K Sbjct: 477 STSHNLSKRETEVLLELSKGFTNKQIGEALHISIATVKFHTSNIYAKLDVSNRSEVIKKV 536 >gi|307328684|ref|ZP_07607856.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306885633|gb|EFN16647.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 228 Score = 44.3 bits (103), Expect = 0.012, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L A DG T +IA K+ LS TV YL SA K NR++A+ A + G+ Sbjct: 168 LTQRERDVLSAAVDGATVADIAAKVHLSPATVRNYLSSAIGKTQTRNRMEAVRAARQNGW 227 Query: 234 I 234 + Sbjct: 228 L 228 >gi|220906489|ref|YP_002481800.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863100|gb|ACL43439.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 236 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 39/64 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE LQL +G ++ IAEKL ++V TV ++ + KL A +R QA +A+R Sbjct: 172 ASPLTERELEVLQLIVEGDSNALIAEKLFITVGTVKTHVRNILNKLCADDRTQAAVRALR 231 Query: 231 FGYI 234 G I Sbjct: 232 SGLI 235 >gi|206601912|gb|EDZ38394.1| Putative two component transcriptional regulator, LuxR family [Leptospirillum sp. Group II '5-way CG'] Length = 211 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RET L+L G ++ EI + G+S+ TV A++ S KL A R A KAI+ G Sbjct: 151 LSPRETEILKLLSKGLSNREIGDIAGISLSTVKAHIQSILEKLSASTRADAAVKAIKKGL 210 Query: 234 I 234 I Sbjct: 211 I 211 >gi|56964850|ref|YP_176581.1| two-component response regulator of extracellular degradative enzyme [Bacillus clausii KSM-K16] gi|56911093|dbj|BAD65620.1| two-component response regulator of extracellular degradative enzyme [Bacillus clausii KSM-K16] Length = 235 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG + I E L +S TV ++ + K++ +R QA+ ++I+ GY Sbjct: 172 LTRRECEVLQLMTDGQNNRAIGESLYISEKTVKNHVSNILQKMNVNDRTQAVVESIKKGY 231 Query: 234 IC 235 + Sbjct: 232 VI 233 >gi|326391463|ref|ZP_08212998.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] gi|325992489|gb|EGD50946.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] Length = 208 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 34/53 (64%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++LT RE L+L GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 143 KDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQA 195 >gi|319791973|ref|YP_004153613.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315594436|gb|ADU35502.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 214 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT R+ CL+ G G +++EIA L L TVN ++ SA L +R A+ KA++ Sbjct: 139 AIRLTNRQCQCLEFVGAGRSTKEIARLLSLHPGTVNYHIDSAMEALGVKSRAHAVQKALQ 198 Query: 231 FGYI 234 G + Sbjct: 199 LGLL 202 >gi|166007196|pdb|2RNJ|A Chain A, Nmr Structure Of The S. Aureus Vrar Dna Binding Domain Length = 91 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 38/71 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 KKR+ LTERE L L GY+++EIA +++ TV ++ + KL+ +R Q Sbjct: 20 MKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQ 79 Query: 224 AIAKAIRFGYI 234 A+ A + I Sbjct: 80 AVIYAFQHNLI 90 >gi|167031823|ref|YP_001667054.1| ATP-dependent transcription regulator LuxR [Pseudomonas putida GB-1] gi|166858311|gb|ABY96718.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pseudomonas putida GB-1] Length = 905 Score = 44.3 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+L G ++++I+E+L +S+HTV + KL R QA+AKA G Sbjct: 844 LSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGVERRTQAVAKAKTLGL 903 Query: 234 I 234 + Sbjct: 904 L 904 >gi|1066155|dbj|BAA09943.1| ESA36 [Streptomyces thermoviolaceus] Length = 334 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 38/64 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A+++ +E + L++ GYT E IA++LG+S T S +LDA +R +A A++ Sbjct: 267 AKDMPPQERAVLKMLAQGYTDEAIAKRLGVSPRTARRIAASLMERLDARSRFEAACYAVQ 326 Query: 231 FGYI 234 G++ Sbjct: 327 DGWL 330 >gi|69248021|ref|ZP_00604584.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus faecium DO] gi|227550521|ref|ZP_03980570.1| LuxR family response regulator [Enterococcus faecium TX1330] gi|257880197|ref|ZP_05659850.1| regulatory protein [Enterococcus faecium 1,230,933] gi|257882998|ref|ZP_05662651.1| regulatory protein [Enterococcus faecium 1,231,502] gi|257888548|ref|ZP_05668201.1| regulatory protein [Enterococcus faecium 1,141,733] gi|257891419|ref|ZP_05671072.1| regulatory protein [Enterococcus faecium 1,231,410] gi|257897077|ref|ZP_05676730.1| regulatory protein [Enterococcus faecium Com12] gi|258614385|ref|ZP_05712155.1| LuxR family DNA-binding response regulator [Enterococcus faecium DO] gi|293377300|ref|ZP_06623504.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293572485|ref|ZP_06683464.1| transcriptional regulatory protein DegU [Enterococcus faecium E980] gi|294622136|ref|ZP_06701212.1| transcriptional regulatory protein DegU [Enterococcus faecium U0317] gi|68194589|gb|EAN09079.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus faecium DO] gi|227180422|gb|EEI61394.1| LuxR family response regulator [Enterococcus faecium TX1330] gi|257814425|gb|EEV43183.1| regulatory protein [Enterococcus faecium 1,230,933] gi|257818656|gb|EEV45984.1| regulatory protein [Enterococcus faecium 1,231,502] gi|257824602|gb|EEV51534.1| regulatory protein [Enterococcus faecium 1,141,733] gi|257827779|gb|EEV54405.1| regulatory protein [Enterococcus faecium 1,231,410] gi|257833642|gb|EEV60063.1| regulatory protein [Enterococcus faecium Com12] gi|291598337|gb|EFF29424.1| transcriptional regulatory protein DegU [Enterococcus faecium U0317] gi|291607402|gb|EFF36745.1| transcriptional regulatory protein DegU [Enterococcus faecium E980] gi|292643992|gb|EFF62098.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 210 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 5/110 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--RNLTERETSCLQL 184 GY++ TS +A+ + G +V T +E +R+ LT RE L L Sbjct: 100 GYLLKTSTAHEIADAIRATQRGERVLEPEVTTKMMEKMSRRNEPVLHEELTNRENEILML 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++EIA++L +++ TV ++ + KL+ +R QA A + G + Sbjct: 160 ISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209 >gi|329927293|ref|ZP_08281574.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5] gi|328938596|gb|EGG34980.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5] Length = 865 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT +ET L L G T++ IA++LGL+V TV YL KL +R+QA+ K Sbjct: 801 LTPQETQVLALLRRGDTNQSIADELGLTVGTVKVYLNRIYSKLGVSSRVQAVLK 854 >gi|257893584|ref|ZP_05673237.1| regulatory protein [Enterococcus faecium 1,231,408] gi|260560505|ref|ZP_05832679.1| regulatory protein [Enterococcus faecium C68] gi|261209022|ref|ZP_05923427.1| regulatory protein [Enterococcus faecium TC 6] gi|289565166|ref|ZP_06445618.1| response regulator LiaR [Enterococcus faecium D344SRF] gi|293563601|ref|ZP_06678047.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1162] gi|293569319|ref|ZP_06680617.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1071] gi|294615290|ref|ZP_06695166.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1636] gi|294619055|ref|ZP_06698550.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1679] gi|314939788|ref|ZP_07847008.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314942017|ref|ZP_07848877.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314950011|ref|ZP_07853304.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314953533|ref|ZP_07856445.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314992148|ref|ZP_07857595.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314995132|ref|ZP_07860248.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|257829963|gb|EEV56570.1| regulatory protein [Enterococcus faecium 1,231,408] gi|260073507|gb|EEW61835.1| regulatory protein [Enterococcus faecium C68] gi|260077061|gb|EEW64783.1| regulatory protein [Enterococcus faecium TC 6] gi|289162987|gb|EFD10835.1| response regulator LiaR [Enterococcus faecium D344SRF] gi|291588025|gb|EFF19875.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1071] gi|291591848|gb|EFF23481.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1636] gi|291594716|gb|EFF26098.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1679] gi|291604451|gb|EFF33939.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1162] gi|313590623|gb|EFR69468.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313593289|gb|EFR72134.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313594456|gb|EFR73301.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313599194|gb|EFR78039.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313640928|gb|EFS05508.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313643658|gb|EFS08238.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 210 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 5/110 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--RNLTERETSCLQL 184 GY++ TS +A+ + G +V T +E +R+ LT RE L L Sbjct: 100 GYLLKTSTAHEIADAIRATQRGERVLEPEVTTKMMEKMSRRNDPVLHEELTNRENEILML 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++EIA++L +++ TV ++ + KL+ +R QA A + G + Sbjct: 160 ISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209 >gi|190892498|ref|YP_001979040.1| transcriptional regulator protein [Rhizobium etli CIAT 652] gi|218509442|ref|ZP_03507320.1| probable transcriptional regulator protein [Rhizobium etli Brasil 5] gi|218514340|ref|ZP_03511180.1| probable transcriptional regulator protein [Rhizobium etli 8C-3] gi|190697777|gb|ACE91862.1| probable transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 230 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT +E CL+L +GY+++ IA L L +K A NR QAIAKA+ G Sbjct: 167 SLTSQERRCLELMAEGYSTQRIARALDLKHDETRDLEAGIILKFRANNRFQAIAKAVLLG 226 Query: 233 YI 234 + Sbjct: 227 IV 228 >gi|187251602|ref|YP_001876084.1| two component LuxR family transcriptional regulator [Elusimicrobium minutum Pei191] gi|186971762|gb|ACC98747.1| Two-component transcriptional regulator, LuxR family [Elusimicrobium minutum Pei191] Length = 225 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 7/107 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 N FTSE LM+ +++ +++ ++ + + LT E + L G G Sbjct: 119 NSIKTFTSEGLMIPQQLM-------GKLLHGLRKMGDNGTPSQALLTRTEIKVISLLGKG 171 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +++E+A +L SV T+ +L SA KL +R +A+ KAI G I Sbjct: 172 LSNKELATELSCSVKTIKNHLNSAFHKLGVGSRTEAVVKAIEKGLIS 218 >gi|119717344|ref|YP_924309.1| response regulator receiver [Nocardioides sp. JS614] gi|119538005|gb|ABL82622.1| response regulator receiver [Nocardioides sp. JS614] Length = 212 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + ++ + L++RE L L +G + IAE+L +S T ++LG KL A NR Sbjct: 134 MVRRVGAGTARLSDREHDVLLLLAEGLGTAAIAERLFMSESTAKSHLGHIYQKLGAANRA 193 Query: 223 QAIAKAIRFGYI 234 QA+ A+R G + Sbjct: 194 QALVTAMRIGLL 205 >gi|302533866|ref|ZP_07286208.1| two component transcriptional regulator [Streptomyces sp. C] gi|302442761|gb|EFL14577.1| two component transcriptional regulator [Streptomyces sp. C] Length = 218 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 7/80 (8%) Query: 160 FLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 L R+ AAR LTERE ++ G T+ EIA +L +S+ TV +L + Sbjct: 133 LLRDMAPRTPAARTARRPAEPLTERERDVVRCLARGLTNAEIAAELYVSLSTVKTHLANV 192 Query: 213 TVKLDAVNRIQAIAKAIRFG 232 KLDA NR++ A A G Sbjct: 193 QAKLDARNRVEIAAWAWESG 212 >gi|298247238|ref|ZP_06971043.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549897|gb|EFH83763.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 939 Score = 44.3 bits (103), Expect = 0.013, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L G ++++IAE L ++ TV ++ + KL+A NR QA+A+A G Sbjct: 873 LSAREQEVLRLLARGASNQDIAEALVVATSTVKHHISNILSKLEATNRTQAVARARALGL 932 Query: 234 I 234 + Sbjct: 933 L 933 >gi|300780522|ref|ZP_07090378.1| LuxR family transcriptional regulator [Corynebacterium genitalium ATCC 33030] gi|300534632|gb|EFK55691.1| LuxR family transcriptional regulator [Corynebacterium genitalium ATCC 33030] Length = 280 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 11/104 (10%) Query: 136 SEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 S+ MLAN V E C Q+++ R A L+ RE L G+T Sbjct: 182 SKLRMLANRVEEGPVRKELEQLCDQMVSPV------RVKQATKLSARELDVLSCVALGHT 235 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E AE++G+ TV +YL S KL A R +A+ A R G + Sbjct: 236 NVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 279 >gi|289578700|ref|YP_003477327.1| LuxR family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|297544934|ref|YP_003677236.1| two component LuxR family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528413|gb|ADD02765.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter italicus Ab9] gi|296842709|gb|ADH61225.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 205 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 34/53 (64%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++LT RE L+L GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 140 KDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQA 192 >gi|160890178|ref|ZP_02071181.1| hypothetical protein BACUNI_02618 [Bacteroides uniformis ATCC 8492] gi|156860566|gb|EDO53997.1| hypothetical protein BACUNI_02618 [Bacteroides uniformis ATCC 8492] Length = 254 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 37/57 (64%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S + L+ RE L+L G+ S+EIA +LG+S++TVN + + KL+A N ++AI Sbjct: 188 SPDKQLSNREKEILRLIRQGFLSKEIAYQLGVSIYTVNNHRKNILSKLNANNIMEAI 244 >gi|159898692|ref|YP_001544939.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891731|gb|ABX04811.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 218 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L L G+T+ IAE+L LS TV ++ + KLD +R QA A+ G Sbjct: 153 LTERELAVLNLIATGHTNASIAEQLRLSEGTVRNHVSTILSKLDVADRTQAALLAVEHG 211 >gi|304406658|ref|ZP_07388313.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304344191|gb|EFM10030.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 222 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 2/72 (2%) Query: 164 FKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++RS+ A LTERE L L DG ++EIAE+L +S+ TV ++ + +K + +R Sbjct: 146 LRQRSAQGADEGLTEREKEVLLLIADGMANKEIAEELHISIKTVKTHVSNLLMKCELEDR 205 Query: 222 IQAIAKAIRFGY 233 Q A R G+ Sbjct: 206 TQLAVYAHRKGW 217 >gi|304317230|ref|YP_003852375.1| LuxR family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778732|gb|ADL69291.1| two component transcriptional regulator, LuxR family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 210 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 34/53 (64%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LT+RE L L +GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 143 KELTDREMQILSLIAEGYSNKEIADKLFLSEKTVKNHVYNIFRKLDVKDRTQA 195 >gi|227506399|ref|ZP_03936448.1| regulatory family protein [Corynebacterium striatum ATCC 6940] gi|227197050|gb|EEI77098.1| regulatory family protein [Corynebacterium striatum ATCC 6940] Length = 293 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 11/104 (10%) Query: 136 SEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 S+ MLAN V E C Q+++ R + L+ RE L G+T Sbjct: 195 SKLRMLANRVEDEDLRKELEALCDQMVSPV------RVKQSTKLSARELDVLSCVALGHT 248 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E AE++G+ TV +YL S KL A R +A+ A R G + Sbjct: 249 NVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 292 >gi|167584437|ref|ZP_02376825.1| transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 239 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILNISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|302553937|ref|ZP_07306279.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302471555|gb|EFL34648.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 204 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L+ A DG T+ E+A L LS TV YL +A KL NR +A+ A Sbjct: 141 ANPLTDREREVLRAASDGSTNAELATALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVARE 200 Query: 231 FGYI 234 G++ Sbjct: 201 KGWL 204 >gi|238064601|ref|ZP_04609310.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237886412|gb|EEP75240.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 225 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE+ + L +G ++++IA +LG+S H + S +KL + NR A+ AI+ G Sbjct: 164 LTARESEAMGLMAEGMSNKQIAGRLGISSHGAKRLVASLMLKLGSPNRTAAVVNAIKSGL 223 Query: 234 I 234 + Sbjct: 224 V 224 >gi|2564978|gb|AAB82054.1| hypothetical protein [Rhodobacter capsulatus] Length = 250 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 3/88 (3%) Query: 144 EVIIEAHGACYQVITDFLELFKKR---SSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + I + HG +V+ + L S+ R LT R+ L+ GDG TS +IA+ LGL Sbjct: 151 DAIWDEHGRDLRVLNSIMHLKISALPFSTTRRPLTARQREVLEWVGDGKTSADIAQILGL 210 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + TV +L A L+ QA+ KA Sbjct: 211 TTATVEKHLRLAREALEVETTAQALLKA 238 >gi|87123599|ref|ZP_01079450.1| possible transcriptional regulator [Synechococcus sp. RS9917] gi|86169319|gb|EAQ70575.1| possible transcriptional regulator [Synechococcus sp. RS9917] Length = 92 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 40/67 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S + +L+ RE ++L +G T++EIAE+L +S TV+ ++ + K A NR+ + A Sbjct: 9 SPSIDLSTREIEIVELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGAKNRVALLNWA 68 Query: 229 IRFGYIC 235 + G IC Sbjct: 69 MDHGKIC 75 >gi|25027578|ref|NP_737632.1| putative two-component response regulator [Corynebacterium efficiens YS-314] gi|259507016|ref|ZP_05749916.1| two component system response regulator [Corynebacterium efficiens YS-314] gi|23492860|dbj|BAC17832.1| putative two-component response regulator [Corynebacterium efficiens YS-314] gi|259165294|gb|EEW49848.1| two component system response regulator [Corynebacterium efficiens YS-314] Length = 207 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ LT E L+LAG G + EEIA + L+ T YL A K+ A NR +A A+ Sbjct: 141 SAGESPLTPGEERVLELAGKGLSVEEIAAAVHLAPGTTRNYLSQAMGKVGAQNRFEAFAR 200 Query: 228 AIRFGYI 234 A G++ Sbjct: 201 ARELGWL 207 >gi|121663597|emb|CAM12356.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae] Length = 349 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 1/66 (1%) Query: 163 LFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L K S AA +LT+RE L +G T+ EI E+L +S TV ++ + KL A N+ Sbjct: 164 LVPKLSPAASISLTKREREVLSWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANK 223 Query: 222 IQAIAK 227 +QA+ + Sbjct: 224 VQAVGR 229 >gi|225593182|gb|ACN96099.1| two-component response regulator [Fischerella sp. MV11] Length = 221 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 39/70 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK S LT+RE L L G T++EIAE L ++ TV ++ + KL+ +R QA Sbjct: 151 KKASITVNPLTQREQEILSLIAQGKTNQEIAEALYITTGTVRVHVHTILHKLEVRDRTQA 210 Query: 225 IAKAIRFGYI 234 + A++ G I Sbjct: 211 VIVAMQAGLI 220 >gi|307327124|ref|ZP_07606313.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887205|gb|EFN18202.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 216 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 5/83 (6%) Query: 155 QVITDFLELFKKR-----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 Q+ L+ F K S A LT+RE +Q G T+ EIA +L ++ TV +L Sbjct: 131 QITLRLLQHFTKARRRGASEPAEPLTDREEEVIQGIARGLTNPEIAAELYIAPSTVKTHL 190 Query: 210 GSATVKLDAVNRIQAIAKAIRFG 232 GS KL NR++ A A R G Sbjct: 191 GSVQAKLGLRNRVEVAAWAFRSG 213 >gi|290958464|ref|YP_003489646.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260647990|emb|CBG71096.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 213 Score = 44.3 bits (103), Expect = 0.013, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +A T RE L+ A +G ++EIA +L L + TV YL + K A NR+ AI A+ Sbjct: 149 SASPFTRREAEILRFAAEGAPAQEIAGRLRLELSTVRNYLSTVVAKSGARNRVDAIRIAM 208 Query: 230 RFGYI 234 G+I Sbjct: 209 AEGWI 213 >gi|307266655|ref|ZP_07548184.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter wiegelii Rt8.B1] gi|306918318|gb|EFN48563.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter wiegelii Rt8.B1] Length = 208 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 34/53 (64%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++LT RE L+L GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 143 KDLTPREIEILKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQA 195 >gi|296877022|ref|ZP_06901064.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] gi|296431966|gb|EFH17771.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] Length = 210 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 3/113 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 +PV L GY++ TS + + V A G A ++ +E K + +LT R Sbjct: 90 YPV-LDAGAKGYILKTSSATEILHAVRKVAKGEFAIETEVSQKVESRKNHAELHDDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 149 ERDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFR 201 >gi|218463347|ref|ZP_03503438.1| transcriptional regulator, LuxR family protein [Rhizobium etli Kim 5] Length = 240 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T E CL+L G EIA+ L L+ + VN ++GS KL R QA+ A+R Sbjct: 178 FTRSELDCLRLTAGGRKGNEIAKLLDLTENAVNNHIGSVIKKLGCTTRTQAVVSALRLNI 237 Query: 234 I 234 I Sbjct: 238 I 238 >gi|111022239|ref|YP_705211.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821769|gb|ABG97053.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 226 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 10/108 (9%) Query: 136 SEFLMLANEVIIEAHGACYQ--VITDFLELFK---KRSSAARN----LTERETSCLQLAG 186 +E L+ A + E GAC V L ++ S RN LT RE L L G Sbjct: 112 AEDLIRAVRTVAEG-GACLDPAVTGRVLATYRTVAPSSDGGRNHLTELTARELDVLALIG 170 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+++ EI +LG+S TV +++G +KLD +R AI A G + Sbjct: 171 RGHSNSEIGRELGISGVTVKSHVGHIFLKLDLRDRAAAIVYAFDHGIV 218 >gi|167463122|ref|ZP_02328211.1| response regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 214 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 155 QVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 QV T + F K S+ +LTERE L+L G +++E+A++L + V TV ++ + Sbjct: 131 QVATKIMNRFRQPKPESAPHEDLTEREMEVLRLIASGKSNQEVADELFIGVKTVKFHVTN 190 Query: 212 ATVKLDAVNRIQAIAKAIRFGYIC 235 KL +R QA A + G + Sbjct: 191 VLQKLGVEDRTQAAIYAFKHGIVS 214 >gi|330467583|ref|YP_004405326.1| two component system response regulator [Verrucosispora maris AB-18-032] gi|328810554|gb|AEB44726.1| two component system response regulator [Verrucosispora maris AB-18-032] Length = 227 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G T++E+AE++ SV T ++ +KL A +R+Q + A +G Sbjct: 154 QLTAREREVLMLIARGLTNQELAERMSCSVATAKTHVSRVMMKLGARDRVQVVVLAYEWG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|309792081|ref|ZP_07686555.1| TPR repeat-containing transcriptional regulator LuxR [Oscillochloris trichoides DG6] gi|308225888|gb|EFO79642.1| TPR repeat-containing transcriptional regulator LuxR [Oscillochloris trichoides DG6] Length = 845 Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L GY+ +IA +L LSV+TV ++ KL ++QAI +A GY Sbjct: 785 LSEREIEVLRLLAAGYSYTQIAAQLVLSVNTVRYHIKGLYGKLGVNKQVQAIERARALGY 844 Query: 234 I 234 + Sbjct: 845 V 845 >gi|302545882|ref|ZP_07298224.1| two-component system response regulator TcsR2 [Streptomyces hygroscopicus ATCC 53653] gi|302463500|gb|EFL26593.1| two-component system response regulator TcsR2 [Streptomyces himastatinicus ATCC 53653] Length = 201 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L A DG T +IA K+ LS TV YL SA K NR++A+ A + G+ Sbjct: 141 LTQRERDVLAAAVDGATVADIAAKVHLSPATVRNYLSSAIGKTQTRNRMEAVRAARQNGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|237718329|ref|ZP_04548810.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|229452262|gb|EEO58053.1| transcriptional regulator [Bacteroides sp. 2_2_4] Length = 255 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G S+EIA L +S++TVN + + KL A N I+A+ A R G Sbjct: 193 LTNRELEVLRLMKQGLLSKEIANTLKVSINTVNTHRQNILQKLKANNSIEAVNFAQRLG 251 >gi|254418448|ref|ZP_05032172.1| Sigma-70, region 4 family [Brevundimonas sp. BAL3] gi|196184625|gb|EDX79601.1| Sigma-70, region 4 family [Brevundimonas sp. BAL3] Length = 148 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%), Gaps = 1/61 (1%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE C++LAG G +EIA +LG+S TV +L A VKL +R A A+ + G Sbjct: 4 SLSPREIECVRLAGLGLEDKEIAARLGISPRTVGNHLHRAYVKLKVSDRRLA-ARRLSNG 62 Query: 233 Y 233 Y Sbjct: 63 Y 63 >gi|254387068|ref|ZP_05002344.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194345889|gb|EDX26855.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 216 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SS LT+RE L DG ++ EIA L LS TV ++ + +KLD +R QA Sbjct: 149 SSRGGALTDREREVLSHIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALW 208 Query: 228 AIRFG 232 A+R G Sbjct: 209 AVRHG 213 >gi|7385149|gb|AAF61719.1|AF232769_1 acylhomoserine lactone dependent transcriptional regulator [Pseudomonas fluorescens] Length = 241 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S + L+ RE LQ DG +S EIA LG+SV+TVN +L K A N+ A A A Sbjct: 176 SDPQELSAREREILQWTADGKSSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYA 235 Query: 229 IRFGYI 234 G I Sbjct: 236 AVLGLI 241 >gi|186684363|ref|YP_001867559.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186466815|gb|ACC82616.1| transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 87 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 40/69 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +S +L++RE + L G T++EIA KL +S TV+ ++ + K + NR+ + Sbjct: 5 KSETPVSLSDRELQIIDLVAAGLTNQEIAGKLEISKRTVDNHISNILTKTETENRVALVR 64 Query: 227 KAIRFGYIC 235 A+++G +C Sbjct: 65 WALQWGKVC 73 >gi|99078080|ref|YP_611338.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040] gi|99035218|gb|ABF62076.1| transcriptional regulator, LuxR family [Ruegeria sp. TM1040] Length = 239 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE+ L L +G + AE + +S HT+ Y+ A KL A N A+A+A+ G Sbjct: 177 LSMRESEALSLLAEGMSRARAAEAMAISEHTLRVYIEGARSKLQAQNTTHAVARAVTMGL 236 Query: 234 IC 235 I Sbjct: 237 IA 238 >gi|315612573|ref|ZP_07887486.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] gi|315315554|gb|EFU63593.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] Length = 210 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS L + V A G A Q ++ +E + LT RE LQL Sbjct: 98 KGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA++L +S+ TV ++ + KL+ +R QA Sbjct: 158 KGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|124516028|gb|EAY57537.1| putative two component transcriptional regulator, LuxR family [Leptospirillum rubarum] Length = 211 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RET L+L G ++ EI + G+S+ TV A++ S KL A R A KAI+ G Sbjct: 151 LSPRETEILKLLSKGLSNREIGDIAGISLSTVKAHIQSILEKLSASTRADAAVKAIKKGL 210 Query: 234 I 234 I Sbjct: 211 I 211 >gi|89899702|ref|YP_522173.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89344439|gb|ABD68642.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 217 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 4/77 (5%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 V++D+++ + + LT R+ LQL +G +++EIA +L L+V TV ++ + Sbjct: 135 VVSDYVQRLRGEAQPGAQLTPRQREVLQLIAEGQSTKEIARRLDLAVKTVESHRSQLMKQ 194 Query: 216 LDAVNRIQAIAKAIRFG 232 LD I +A +R+ Sbjct: 195 LD----IHEVAGLVRYA 207 >gi|18250686|emb|CAD20930.1| RaiR protein [Rhizobium leguminosarum] Length = 265 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 11/72 (15%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ITDF +L + RE CL++ +G +++I +L +SV V YL SA KL Sbjct: 199 ITDFPQL-----------SRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKL 247 Query: 217 DAVNRIQAIAKA 228 +A+AKA Sbjct: 248 TVATTSEAVAKA 259 >gi|331669588|ref|ZP_08370434.1| putative 2-component transcriptional regulator [Escherichia coli TA271] gi|331063256|gb|EGI35169.1| putative 2-component transcriptional regulator [Escherichia coli TA271] Length = 148 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT RE+ LQL DG T++EIA L LS V + + KLD + Sbjct: 74 EKISSRYSSDNQLTNRESEILQLIADGKTNKEIANFLQLSRKKVETHRLNIMKKLDVHSG 133 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 134 IELIKTALRMG-VC 146 >gi|329935673|ref|ZP_08285479.1| response regulator [Streptomyces griseoaurantiacus M045] gi|329304851|gb|EGG48723.1| response regulator [Streptomyces griseoaurantiacus M045] Length = 220 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A L RE L+L DG + EIA KL S T+ + T +L NR A+A Sbjct: 154 GAPAVGLLPREVDVLRLVADGLDTSEIAGKLSYSERTIKNVMHGLTTRLHLRNRAHAVAY 213 Query: 228 AIRFGYI 234 A+R GYI Sbjct: 214 ALREGYI 220 >gi|307324713|ref|ZP_07603919.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889595|gb|EFN20575.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 12/105 (11%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LTERETSCLQLAGDGYT 190 ++ A E ++ A ++I DF ++R + R+ LT RET L+L G + Sbjct: 122 VVAAGEALL-APSVTRRLIADF---ARQRPAPRRDGPSARRSGLTPRETEVLELIARGLS 177 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++EIAE L L+ TV ++G KL +R QA+ A G + Sbjct: 178 NQEIAESLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYESGLVT 222 >gi|257885240|ref|ZP_05664893.1| regulatory protein [Enterococcus faecium 1,231,501] gi|257821092|gb|EEV48226.1| regulatory protein [Enterococcus faecium 1,231,501] Length = 210 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 5/110 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--RNLTERETSCLQL 184 GY++ TS +A+ + G +V T +E +R+ LT RE L L Sbjct: 100 GYLLKTSTAHEIADAIRATQRGERVLEPEVTTKMMEKMSRRNDPVLHEELTNRENEILML 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++EIA++L +++ TV ++ + KL+ +R QA A + G + Sbjct: 160 ISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209 >gi|302528552|ref|ZP_07280894.1| two-component system response regulator [Streptomyces sp. AA4] gi|302437447|gb|EFL09263.1| two-component system response regulator [Streptomyces sp. AA4] Length = 216 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 4/63 (6%) Query: 166 KRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +R AR LTERE L G+G ++ +IA +L L+ TV +Y+ VKLD NR Sbjct: 142 RRDDEARRRTAGLTERERDVLACLGEGLSNADIAARLHLAEATVKSYVSRMLVKLDCTNR 201 Query: 222 IQA 224 QA Sbjct: 202 TQA 204 >gi|70726072|ref|YP_252986.1| two-component response regulator [Staphylococcus haemolyticus JCSC1435] gi|88952437|sp|Q4L7J5|VRAR_STAHJ RecName: Full=Response regulator protein vraR gi|68446796|dbj|BAE04380.1| two-component response regulator [Staphylococcus haemolyticus JCSC1435] Length = 209 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|294630527|ref|ZP_06709087.1| two-component system response regulator [Streptomyces sp. e14] gi|292833860|gb|EFF92209.1| two-component system response regulator [Streptomyces sp. e14] Length = 206 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + L+L G ++ EIA L +S+ TV ++G+ KL A NR A+ A G Sbjct: 140 LTEREEAVLRLMATGQSNPEIARALTVSLETVKTHVGNVLSKLGAQNRTHAVVIAYESGL 199 Query: 234 I 234 + Sbjct: 200 V 200 >gi|289165996|ref|YP_003456134.1| Transcriptional regulator, LuxR family with an autoinducer-binding domain [Legionella longbeachae NSW150] gi|288859169|emb|CBJ13099.1| Transcriptional regulator, LuxR family with an autoinducer-binding domain [Legionella longbeachae NSW150] Length = 248 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE CL+L +G+ E IA+ L +S TVN +L +A KL N+ AI Sbjct: 179 LTKREQECLRLTAEGFRLELIAQLLKISKRTVNFHLQNANKKLGVTNKYLAI 230 >gi|331019185|gb|EGH99241.1| transcriptional regulator PsyR [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 247 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ELF +A R L+ RET L+ G EIAE +S TV ++ + + KL+ Sbjct: 177 ELFP--PTANRKLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTA 234 Query: 222 IQAIAKAIRFGYI 234 QA+ KAI+ G + Sbjct: 235 KQAVYKAIKMGMV 247 >gi|330685558|gb|EGG97204.1| response regulator protein VraR [Staphylococcus epidermidis VCU121] Length = 209 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|227489471|ref|ZP_03919787.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227090649|gb|EEI25961.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 280 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 1/99 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ MLAN + E +V+ D + + R L+ RE L G+T+ E A Sbjct: 182 SKLRMLANRITDEEVRNELEVLCDQM-IAPVRIKPTTKLSARELDVLSCVALGHTNVEAA 240 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++G+ TV +YL S KL A R +A+ A R G + Sbjct: 241 KEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 279 >gi|227502153|ref|ZP_03932202.1| regulatory family protein [Corynebacterium accolens ATCC 49725] gi|306836811|ref|ZP_07469769.1| LuxR family bacterial regulatory protein [Corynebacterium accolens ATCC 49726] gi|227077137|gb|EEI15100.1| regulatory family protein [Corynebacterium accolens ATCC 49725] gi|304567272|gb|EFM42879.1| LuxR family bacterial regulatory protein [Corynebacterium accolens ATCC 49726] Length = 279 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 11/104 (10%) Query: 136 SEFLMLAN-----EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 S+ MLAN E+ E C Q+++ R + L+ RE L G+T Sbjct: 181 SKLRMLANRVEDEELRKELEALCDQMVSPV------RVKQSTKLSARELDVLSCVALGHT 234 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E AE++G+ TV +YL S KL A R +A+ A R G + Sbjct: 235 NVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 278 >gi|148983791|ref|ZP_01817110.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147923938|gb|EDK75050.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|301799497|emb|CBW32043.1| response regulator protein [Streptococcus pneumoniae OXC141] Length = 210 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS L + V A G A Q ++ +E + LT RE LQL Sbjct: 98 KGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + Sbjct: 158 KGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQATVYAFQ 201 >gi|21223502|ref|NP_629281.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|9967644|emb|CAC05762.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 204 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L+ A DG T+ E+A L LS TV YL +A KL NR +A+ A Sbjct: 141 ANPLTDREREILRAAADGSTNAELASALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVARN 200 Query: 231 FGYI 234 G++ Sbjct: 201 KGWL 204 >gi|330988560|gb|EGH86663.1| regulatory protein, LuxR [Pseudomonas syringae pv. lachrymans str. M301315] Length = 909 Score = 44.3 bits (103), Expect = 0.014, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 848 LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKVLGL 907 Query: 234 I 234 + Sbjct: 908 L 908 >gi|294054035|ref|YP_003547693.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293613368|gb|ADE53523.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 208 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 7/110 (6%) Query: 129 NGYVIFTSEFLMLANEVIIE-AHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY+ T+ + E I E A+G + I + LE K++ LT RE LQL Sbjct: 102 KGYLTKTAGAVEDVMEAIHEVANGGTFFPASIQEKLEARKQQ----EELTPRELEVLQLL 157 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G+G +++EIA+ + +S+ TV ++ + KL A +R QA+ A + G + Sbjct: 158 GEGQSNKEIADVMDISLSTVKIHVTNIRDKLGAADRTQAVVIAFKRGILS 207 >gi|294632669|ref|ZP_06711228.1| LuxR family transcriptional regulator [Streptomyces sp. e14] gi|292830450|gb|EFF88800.1| LuxR family transcriptional regulator [Streptomyces sp. e14] Length = 210 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + L+L DG +EEIA +L S TV A + T + NR A+A A+R G Sbjct: 150 LSERERAVLRLVADGRETEEIARELCYSPRTVTAVVHDVTRRFQLRNRAHAVAFALRAGL 209 Query: 234 I 234 + Sbjct: 210 L 210 >gi|270159175|ref|ZP_06187831.1| LuxR family transcriptional regulator [Legionella longbeachae D-4968] gi|269987514|gb|EEZ93769.1| LuxR family transcriptional regulator [Legionella longbeachae D-4968] Length = 247 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE CL+L +G+ E IA+ L +S TVN +L +A KL N+ AI Sbjct: 178 LTKREQECLRLTAEGFRLELIAQLLKISKRTVNFHLQNANKKLGVTNKYLAI 229 >gi|242371807|ref|ZP_04817381.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242350508|gb|EES42109.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 212 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 132 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 191 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 192 KLEVQDRTQAVIYAFQHNLI 211 >gi|257057262|ref|YP_003135094.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587134|gb|ACU98267.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 223 Score = 44.3 bits (103), Expect = 0.014, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L +GY+++EIA++L +S TV ++ S KL +R QA A+R G Sbjct: 159 LTERERDVLILIANGYSNKEIADELVISERTVRTHVSSILRKLRLSSRTQAALVAVREGL 218 Query: 234 I 234 + Sbjct: 219 V 219 >gi|327403771|ref|YP_004344609.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327319279|gb|AEA43771.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 214 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L D YT++ IAE+L LS T+ Y S +KLD N + K + G Sbjct: 152 LTTREKQVLKLIMDEYTTKRIAEELFLSEKTIENYRSSLMLKLDVTNLTGLVKKTLLLGL 211 Query: 234 I 234 + Sbjct: 212 L 212 >gi|322381417|ref|ZP_08055416.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154644|gb|EFX46919.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 208 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Query: 155 QVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 QV T + F K S+ +LTERE L+L G +++E+A++L + V TV ++ + Sbjct: 125 QVATKIMNRFRQPKPESAPHEDLTEREMEVLRLIASGKSNQEVADELFIGVKTVKFHVTN 184 Query: 212 ATVKLDAVNRIQAIAKAIRFGYIC 235 KL +R QA A + G + Sbjct: 185 VLQKLGVEDRTQAAIYAFKHGIVS 208 >gi|302543091|ref|ZP_07295433.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302460709|gb|EFL23802.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 219 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L DG ++ EIA L +S TV ++ KLD +R+QA+ A R G Sbjct: 158 LTPRELEVLRLIADGRSNSEIAAALQISQETVKTFVSRILTKLDLRDRVQAVVYAYRQG 216 >gi|330961775|gb|EGH62035.1| regulatory protein, LuxR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 910 Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 849 LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILGL 908 Query: 234 I 234 + Sbjct: 909 L 909 >gi|319780563|ref|YP_004140039.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166451|gb|ADV09989.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 862 Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+++A LT+R+ LQL G++++ IAE L +S TV+ ++ + KLDA++R +A A Sbjct: 796 RANSA-GLTQRQMEVLQLIERGFSNKRIAEHLTISPKTVDHHVSAVLGKLDAISRGEATA 854 Query: 227 KAIRFGYI 234 A G I Sbjct: 855 AARDSGLI 862 >gi|258652113|ref|YP_003201269.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555338|gb|ACV78280.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 230 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ R A L++RE L+L +G+ + EIA +L S TV L T +L NR Sbjct: 158 QVLAPRGLAFSGLSDREAEVLKLVANGHDTAEIAGRLSYSQRTVKNILHDVTTRLQLRNR 217 Query: 222 IQAIAKAIRFGYI 234 A+A A+R G I Sbjct: 218 SHAVAYAVREGLI 230 >gi|156976380|ref|YP_001447286.1| hypothetical protein VIBHAR_05153 [Vibrio harveyi ATCC BAA-1116] gi|156527974|gb|ABU73059.1| hypothetical protein VIBHAR_05153 [Vibrio harveyi ATCC BAA-1116] Length = 218 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LQ+ DG ++ EIA+ L +S HT+ ++L + K++ NR QA + A R Sbjct: 160 LTRREVQVLQMLKDGGSNMEIADSLFISEHTIKSHLYNIFRKIEVKNRTQATSWAKR 216 >gi|326772882|ref|ZP_08232166.1| two-component system response regulator [Actinomyces viscosus C505] gi|326637514|gb|EGE38416.1| two-component system response regulator [Actinomyces viscosus C505] Length = 253 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + A +G T+EEIA +L +SV TV A+L SA ++ A NR+ A R G Sbjct: 191 GLSRRELEVIAAAAEGLTTEEIANRLYISVSTVKAHLRSAQERVGARNRVHLAVLAERAG 250 Query: 233 YI 234 + Sbjct: 251 LL 252 >gi|295401191|ref|ZP_06811164.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|312109465|ref|YP_003987781.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294976784|gb|EFG52389.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|311214566|gb|ADP73170.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 226 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 55/123 (44%), Gaps = 18/123 (14%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARN-------------- 173 GY++ + L V I A G Y IT L +R SA +N Sbjct: 101 GYLLKDMDADTLIEAVKIVAEGGSYLHPKITHNLIREYRRLSAGKNEKEGEGKREARWPL 160 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE LQL DG ++ I E L +S TV ++ + KL+ +R QA+ AI+ Sbjct: 161 HLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNVNDRTQAVIVAIKN 220 Query: 232 GYI 234 G++ Sbjct: 221 GWV 223 >gi|227547991|ref|ZP_03978040.1| regulatory family protein [Corynebacterium lipophiloflavum DSM 44291] gi|227079936|gb|EEI17899.1| regulatory family protein [Corynebacterium lipophiloflavum DSM 44291] Length = 279 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 11/104 (10%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYT 190 S+ MLAN V E ++ D +L + S R L+ RE L G+T Sbjct: 181 SKLRMLANRVTDE------ELRRDLEQLCDQMVSPVRIKQTTKLSARELDVLSCVALGHT 234 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E AE++G+ TV +YL S KL A R +A+ A R G + Sbjct: 235 NVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 278 >gi|170700319|ref|ZP_02891331.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170134753|gb|EDT03069.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 239 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G Sbjct: 175 TLTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAG 234 Query: 233 YI 234 I Sbjct: 235 LI 236 >gi|148555438|ref|YP_001263020.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148500628|gb|ABQ68882.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 879 Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 23/55 (41%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RET + L +GY ++EIA +LG+S TV + KL +R QAIA+A Sbjct: 819 LSPRETEIIALVAEGYITKEIAVRLGISEGTVKTHRKKIHEKLGVASRSQAIARA 873 >gi|111023556|ref|YP_706528.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110823086|gb|ABG98370.1| probable transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 288 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G T+ E A++L + TV +YL SA KLDA +R +A+ A R G Sbjct: 226 HLTPREIDVLSHVALGCTNSEAAQRLSVGPETVKSYLRSAMSKLDARSRHEAVVTARRLG 285 Query: 233 YI 234 + Sbjct: 286 LL 287 >gi|84684996|ref|ZP_01012895.1| autoinducer-binding transcriptional regulator LuxR [Maritimibacter alkaliphilus HTCC2654] gi|84666728|gb|EAQ13199.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2654] Length = 225 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 41/74 (55%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LE A+ +L+ RE + ++ G + + A +LG+S HT+ Y+ SA KL A+N Sbjct: 150 LEFEGAEGIASPSLSPRELAAIRCLARGLSRAQAAAELGISEHTLRVYIESARHKLGALN 209 Query: 221 RIQAIAKAIRFGYI 234 A+A+A+ G I Sbjct: 210 TTHAVARALSTGII 223 >gi|330887817|gb|EGH20478.1| regulatory protein, LuxR [Pseudomonas syringae pv. mori str. 301020] Length = 903 Score = 44.3 bits (103), Expect = 0.015, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 842 LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKVLGL 901 Query: 234 I 234 + Sbjct: 902 L 902 >gi|328883875|emb|CCA57114.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 204 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ + DG EIA + LS TV YL SA KL A NR A+ A G+ Sbjct: 144 LTAREAEVLEFSADGAPVAEIARRASLSPGTVRNYLSSAAAKLGAENRHAAVRLAQAKGW 203 Query: 234 I 234 + Sbjct: 204 V 204 >gi|306828929|ref|ZP_07462121.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|304429107|gb|EFM32195.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 210 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS L + V A G A Q ++ +E + LT RE LQL Sbjct: 98 KGYMLKTSSADELLHAVRKVASGELAIEQEVSKKVEYHRNHIELHEELTARERDVLQLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA++L +S+ TV ++ + KL+ +R QA Sbjct: 158 KGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|312195733|ref|YP_004015794.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227069|gb|ADP79924.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 404 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A +T RE + L DG T+ IA +L +SV TV +L S KLDA +R+ A+ +A Sbjct: 239 AATLEITPREITVLVALADGLTAAGIARRLNISVRTVGNHLTSLYRKLDAPDRLTAVLRA 298 Query: 229 IRFGYI 234 G + Sbjct: 299 HHLGLL 304 >gi|169828201|ref|YP_001698359.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168992689|gb|ACA40229.1| comA, srfB, comAA; two-component response regulator. potential cognate sensor kinase is comP [Lysinibacillus sphaericus C3-41] Length = 208 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 5/81 (6%) Query: 159 DFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 DFL+ ++RS+ + L+++E LQL G T++ IA +G++ TV YL Sbjct: 127 DFLDFVQQRSNLPNSRQEVLLSDKEQEILQLVAQGCTNKAIASAIGVTQRTVENYLSKLF 186 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 VKL+ +R +A+ A +I Sbjct: 187 VKLNVESRAEAVIVAKEKAWI 207 >gi|220921758|ref|YP_002497059.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946364|gb|ACL56756.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 244 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQ A DG + EI E +G+S H +L + KL +R A+A +R G Sbjct: 183 LSPRERESLQWAADGKSDWEIGEAMGISEHGAIRHLRAVRRKLGTTSRAHAVALGLRLGI 242 Query: 234 I 234 I Sbjct: 243 I 243 >gi|330468504|ref|YP_004406247.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811475|gb|AEB45647.1| two component transcriptional regulator, LuxR family protein [Verrucosispora maris AB-18-032] Length = 192 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L L G E+A LGL+ TV +LG T K+ A R++A+ A G+ Sbjct: 132 LTSRETQILDLTAAGAPVAEVARALGLAPGTVRNHLGRITRKVGARTRVEAVRVAHEAGW 191 Query: 234 I 234 I Sbjct: 192 I 192 >gi|227833967|ref|YP_002835674.1| transcriptional regulator, LuxR family [Corynebacterium aurimucosum ATCC 700975] gi|262183544|ref|ZP_06042965.1| transcriptional regulator, LuxR family protein [Corynebacterium aurimucosum ATCC 700975] gi|227454983|gb|ACP33736.1| transcriptional regulator, LuxR family [Corynebacterium aurimucosum ATCC 700975] Length = 279 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 11/104 (10%) Query: 136 SEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 S+ MLAN V E C Q+++ R + L+ RE L G+T Sbjct: 181 SKLRMLANRVNDEDLRKELEALCDQMVSPV------RVKQSTKLSARELDVLSCVALGHT 234 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E AE++G+ TV +YL S KL A R +A+ A R G + Sbjct: 235 NVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 278 >gi|227541066|ref|ZP_03971115.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227183326|gb|EEI64298.1| transcriptional regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 280 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 1/99 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ MLAN + E +V+ D + + R L+ RE L G+T+ E A Sbjct: 182 SKLRMLANRITDEEVRNELEVLCDQM-IAPVRIKPTTKLSARELDVLSCVALGHTNVEAA 240 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++G+ TV +YL S KL A R +A+ A R G + Sbjct: 241 KEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 279 >gi|149925599|ref|ZP_01913863.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] gi|149825716|gb|EDM84924.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] Length = 237 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 40/70 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + S A ++T+RE +Q G+T++EIA ++G+S HTV ++ KL +R +A Sbjct: 166 QDESQKACSITDRELKVIQQVARGFTAQEIAAQMGISTHTVATHVKRIYKKLHVHSRSEA 225 Query: 225 IAKAIRFGYI 234 + +A G + Sbjct: 226 VYEATLLGLL 235 >gi|34496978|ref|NP_901193.1| nitrate/nitrite response regulator protein [Chromobacterium violaceum ATCC 12472] gi|34102834|gb|AAQ59198.1| nitrate/nitrite response regulator protein [Chromobacterium violaceum ATCC 12472] Length = 212 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G+ + EIA+ LG S T+ ++ S KL +R++A+ + + G Sbjct: 151 RLTGREVEVLALMAGGFNNREIADALGPSEGTIKNHVSSILSKLGVRDRVRAVLRGLELG 210 Query: 233 YI 234 YI Sbjct: 211 YI 212 >gi|303263546|ref|ZP_07349469.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|302647319|gb|EFL77543.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] Length = 211 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS L + V A G A Q ++ +E + LT RE LQL Sbjct: 98 KGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA+ L +S+ TV ++ + KL+ +R QA Sbjct: 158 KGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|269962779|ref|ZP_06177120.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832469|gb|EEZ86587.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 218 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LQ+ DG ++ EIA+ L +S HT+ ++L + K++ NR QA + A R Sbjct: 160 LTRREVQVLQMLKDGGSNMEIADSLFISEHTIKSHLYNIFRKIEVKNRTQATSWAKR 216 >gi|239985867|ref|ZP_04706531.1| two component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 221 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G ++I +F K+ ++AA LTERE + L G G ++EEIA +L +S T + Sbjct: 130 GVTRRLIAEFAARSKEPTAAASLALLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + VKL A +R Q + A G + Sbjct: 190 VSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|223044000|ref|ZP_03614040.1| response regulator protein VraR [Staphylococcus capitis SK14] gi|222442543|gb|EEE48648.1| response regulator protein VraR [Staphylococcus capitis SK14] Length = 209 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|218659948|ref|ZP_03515878.1| autoinducer transcriptional regulator protein [Rhizobium etli IE4771] Length = 246 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 30/62 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L RE CL A G S++I + LGLS HT YL +A KL AIA A+ Sbjct: 178 LGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKAARYKLGCPTLSAAIAHAVHLNL 237 Query: 234 IC 235 I Sbjct: 238 IT 239 >gi|220905737|ref|YP_002481048.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219862348|gb|ACL42687.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 100 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 42/73 (57%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + S ++L++RE ++L G ++++IAEKL +S TV+ ++ + K NR+ Sbjct: 1 MLSGESQENQSLSDRELQVIELIAAGLSNQQIAEKLEISKRTVDNHVSNILEKTKTGNRV 60 Query: 223 QAIAKAIRFGYIC 235 + A+++G +C Sbjct: 61 ALVRWAVQWGKVC 73 >gi|182439488|ref|YP_001827207.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780152|ref|ZP_08239417.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178468004|dbj|BAG22524.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660485|gb|EGE45331.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 214 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L DG ++ EIA LS TV ++ + +KLD +R QA A+R G Sbjct: 152 TLTEREREVLGLIADGRSNREIARAFVLSEKTVKTHVSNILMKLDVADRTQAALWAVRNG 211 >gi|323490881|ref|ZP_08096077.1| two-component response regulator [Planococcus donghaensis MPA1U2] gi|323395449|gb|EGA88299.1| two-component response regulator [Planococcus donghaensis MPA1U2] Length = 198 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 39/60 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE ++L +G +++EIA++L ++ TV Y+ + KL+ NRI+AI++ G+ Sbjct: 138 LTDREKQVMELIAEGRSTKEIAKELFITTGTVRNYISTILDKLEVSNRIEAISRFKEKGW 197 >gi|119776080|ref|YP_928820.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119768580|gb|ABM01151.1| transcriptional regulator, LuxR family [Shewanella amazonensis SB2B] Length = 221 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 35/52 (67%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++LT RE + +QL G G ++EIA++L +S HTV A++ S K + NR++ Sbjct: 154 QSLTGRECTIIQLVGSGARNKEIADRLCISEHTVKAHISSIFRKTQSRNRVE 205 >gi|172063602|ref|YP_001811253.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171996119|gb|ACB67037.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 239 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|25029001|ref|NP_739055.1| hypothetical protein CE2445 [Corynebacterium efficiens YS-314] gi|259506010|ref|ZP_05748912.1| LuxR family bacterial regulatory protein [Corynebacterium efficiens YS-314] gi|23494288|dbj|BAC19255.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259166491|gb|EEW51045.1| LuxR family bacterial regulatory protein [Corynebacterium efficiens YS-314] Length = 281 Score = 44.3 bits (103), Expect = 0.015, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 11/104 (10%) Query: 136 SEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 S+ MLAN V E C Q++T R L+ RE L G+T Sbjct: 183 SKLRMLANRVADEELRRELEELCDQMVTPV------RVKQTTKLSARELDVLACVALGHT 236 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E AE++G+ TV +YL S KL A R +A+ A R G + Sbjct: 237 NVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 280 >gi|73662218|ref|YP_300999.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|88952438|sp|Q49YS9|VRAR_STAS1 RecName: Full=Response regulator protein vraR gi|72494733|dbj|BAE18054.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 209 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 5/92 (5%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 NE + EA +V+ K+R+ LTERE L L GY+++EIA +++ Sbjct: 122 NESVFEA-----EVLVKMRNRMKQRAELYEMLTEREMEILLLIAKGYSNQEIASASHITI 176 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ + KL+ +R QA+ A + I Sbjct: 177 KTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|314934049|ref|ZP_07841412.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] gi|313653160|gb|EFS16919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] Length = 209 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|302547311|ref|ZP_07299653.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302464929|gb|EFL28022.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 220 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G ++ EIA +L + TV +++ S KL A +R QA+ A G+ Sbjct: 156 LTEREGDVLRLVARGLSNAEIAARLVVGTETVKSHVSSVLAKLGARDRTQAVIAAYESGF 215 Query: 234 IC 235 + Sbjct: 216 VS 217 >gi|121533453|ref|ZP_01665281.1| two component transcriptional regulator, LuxR family [Thermosinus carboxydivorans Nor1] gi|121308012|gb|EAX48926.1| two component transcriptional regulator, LuxR family [Thermosinus carboxydivorans Nor1] Length = 225 Score = 44.3 bits (103), Expect = 0.016, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 7/78 (8%) Query: 165 KKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 KK+ SA + LT RE LQL G ++ EIA+KL LS TV +L + K++ Sbjct: 145 KKQESAVQPARRGEERLTYRELEVLQLVAQGLSNSEIAQKLYLSEKTVKNHLTNIFRKIN 204 Query: 218 AVNRIQAIAKAIRFGYIC 235 +R QA+ AIR + Sbjct: 205 VTDRTQALIYAIRHKIVV 222 >gi|242241722|ref|ZP_04796167.1| response regulator [Staphylococcus epidermidis W23144] gi|242234812|gb|EES37123.1| response regulator [Staphylococcus epidermidis W23144] Length = 209 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|224369547|ref|YP_002603711.1| two-component response regulator (response receiver domain/LuxR regulator domain) [Desulfobacterium autotrophicum HRM2] gi|223692264|gb|ACN15547.1| two-component response regulator (response receiver domain/LuxR regulator domain) [Desulfobacterium autotrophicum HRM2] Length = 207 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G T +EI+ L + +H+V++ + KL A NR +A AKA + G Sbjct: 147 LTPREIKILKLMEQGLTYKEISSSLSIGIHSVHSQVKKIHSKLKAANRREAFAKAKKKGL 206 Query: 234 I 234 I Sbjct: 207 I 207 >gi|254411603|ref|ZP_05025379.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181325|gb|EDX76313.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 225 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL++RE L+L +G ++ EIA KL LS +TV ++ KL +R+QA A+R G Sbjct: 164 NLSQRELEVLKLIVEGNSNPEIAAKLYLSANTVKTHVRGIMNKLSVDDRVQAAVVALRSG 223 Query: 233 YI 234 + Sbjct: 224 IV 225 >gi|14627170|gb|AAK50054.2|AF364058_1 transcriptional activator [Burkholderia multivorans ATCC 17616] Length = 239 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G Sbjct: 176 LTAREREVLCWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|298248387|ref|ZP_06972192.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551046|gb|EFH84912.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 215 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L G + EIA++L LS+ TV +L + KL +R+QAI +A G Sbjct: 155 LTEREREILSLLAQGLNNAEIAQRLVLSLKTVRNHLSNVFNKLQVADRVQAIIRAREAG 213 >gi|283782991|ref|YP_003373745.1| transcriptional regulator, LuxR family [Gardnerella vaginalis 409-05] gi|298253351|ref|ZP_06977143.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis 5-1] gi|283441595|gb|ADB14061.1| transcriptional regulator, LuxR family [Gardnerella vaginalis 409-05] gi|297532746|gb|EFH71632.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis 5-1] Length = 217 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 38/60 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ +E+ ++L GY+S+EIA++L + V TVN +L KL +R+QA+A ++ + Sbjct: 156 LSPQESEIMRLCKQGYSSKEIADQLNVKVSTVNTHLRRIYGKLQVKSRMQALAVLAKYSH 215 >gi|228991885|ref|ZP_04151821.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] gi|228767614|gb|EEM16241.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] Length = 189 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 13/124 (10%) Query: 115 FAGIAFPV-RLGFHKNGYVIFTSEFLMLAN--EVIIEAH-GACYQVITDFLELFKKRSSA 170 G PV R K G F ++ +M E++I+ + G CY F Sbjct: 68 LTGYDLPVYRYEAQKIGVSGFINKNIMPDKLLEILIKINEGICY---------FPMSMDY 118 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+ E LQL GY +EIA L S T++ ++ KLD + ++A+ K I+ Sbjct: 119 VEELTDSEKQILQLLCGGYKRKEIATMLYASERTISNHIQHMFDKLDVSSSLEAVTKGIQ 178 Query: 231 FGYI 234 GYI Sbjct: 179 LGYI 182 >gi|183221890|ref|YP_001839886.1| putative two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911960|ref|YP_001963515.1| two component response regulator receiver protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776636|gb|ABZ94937.1| Receiver component of a two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780312|gb|ABZ98610.1| Putative two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 212 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 36/64 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +++ +LT+RET LQL G IAE L LS HTV+ Y+ S KL NR++ Sbjct: 143 KVKTNEEESLTDRETQILQLLVKGKKISSIAELLLLSEHTVHGYVKSIYKKLMVHNRVEL 202 Query: 225 IAKA 228 KA Sbjct: 203 TLKA 206 >gi|149370505|ref|ZP_01890194.1| two-component response regulator [unidentified eubacterium SCB49] gi|149356056|gb|EDM44613.1| two-component response regulator [unidentified eubacterium SCB49] Length = 214 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE + L + +T++EIA++L LS HT+ +Y + KL+ N AI+ GY Sbjct: 152 LTKREVEVISLIAEEFTTQEIADQLFLSKHTIESYRKNLITKLNVRNLAGLTKYAIKKGY 211 Query: 234 IC 235 + Sbjct: 212 VS 213 >gi|318040623|ref|ZP_07972579.1| transcriptional regulator, LuxR family protein [Synechococcus sp. CB0101] Length = 79 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE + L G T++EI E+L +S TV+ ++ + K A NR+ + A+ G Sbjct: 2 DLSERELEIIDLVAQGLTNQEIGERLMISKRTVDNHVSNVFTKTGAKNRVALLNWAMDHG 61 Query: 233 YIC 235 IC Sbjct: 62 KIC 64 >gi|255325933|ref|ZP_05367025.1| LuxR-family transcriptional regulator [Corynebacterium tuberculostearicum SK141] gi|311740234|ref|ZP_07714066.1| LuxR family bacterial regulatory protein [Corynebacterium pseudogenitalium ATCC 33035] gi|255297145|gb|EET76470.1| LuxR-family transcriptional regulator [Corynebacterium tuberculostearicum SK141] gi|311304789|gb|EFQ80860.1| LuxR family bacterial regulatory protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 279 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 1/99 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ MLAN V E + + D + + R + L+ RE L G+T+ E A Sbjct: 181 SKLRMLANRVEDEELRKELETLCDQM-VSPVRVKQSTKLSARELDVLSCVALGHTNVEAA 239 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E++G+ TV +YL S KL A R +A+ A R G + Sbjct: 240 EEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 278 >gi|330809086|ref|YP_004353548.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377194|gb|AEA68544.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 211 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++LT RE L GYT+ EIAE+LG++V T++ Y +++A N Q + AI Sbjct: 143 QSLTPRENDVLLPLVQGYTNREIAEQLGVNVRTIDLYRSRVMKRMEAENLPQLVGMAIVA 202 Query: 232 GYI 234 G + Sbjct: 203 GLV 205 >gi|255534826|ref|YP_003095197.1| LuxR family transcriptional regulator protein [Flavobacteriaceae bacterium 3519-10] gi|255341022|gb|ACU07135.1| LuxR family transcriptional regulator protein [Flavobacteriaceae bacterium 3519-10] Length = 280 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L L GY+ EIA+ + +S HTV ++ + K+ N + I+KAI Sbjct: 220 LTQRETEILSLIARGYSGSEIAKNICVSEHTVKSHRRNIIAKMRVRNTKELISKAIEMAV 279 Query: 234 I 234 I Sbjct: 280 I 280 >gi|194015561|ref|ZP_03054177.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] gi|194012965|gb|EDW22531.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] Length = 229 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQ+ DG ++ I E L +S TV ++ + K++ NR QA+ AI+ G+ Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNNRTQAVVVAIKNGW 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|126437868|ref|YP_001073559.1| regulatory protein, LuxR [Mycobacterium sp. JLS] gi|126237668|gb|ABO01069.1| regulatory protein, LuxR [Mycobacterium sp. JLS] Length = 937 Score = 43.9 bits (102), Expect = 0.016, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 35/59 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+R ++ LT +E +LA DG T++EI +L +SVHTV +L VK+ +R Q Sbjct: 864 KQRLTSGDELTAQEAQIARLAADGLTNQEIGAQLFISVHTVEWHLRKVFVKVGITSRRQ 922 >gi|315182035|gb|ADT88948.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC 11218] Length = 207 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A LT RE ++L G G ++ EIA+KL +S +TV +L + K++A NR+QA+ Sbjct: 137 SQAYTKLTRREQQIIKLLGSGASNIEIADKLYVSENTVKTHLHNVFKKINAKNRLQALIW 196 Query: 228 A 228 A Sbjct: 197 A 197 >gi|124024939|ref|YP_001014055.1| LuxR family regulatory protein [Prochlorococcus marinus str. NATL1A] gi|123960007|gb|ABM74790.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. NATL1A] Length = 90 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 39/68 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S+ L+ RE + L DG T++EIAE+L +S TV+ ++ + K + NR+ + Sbjct: 8 NSSHMGLSAREMEIIGLVADGLTNQEIAERLTISKRTVDNHVSNMFTKTGSKNRVALLNW 67 Query: 228 AIRFGYIC 235 A+ G IC Sbjct: 68 AMDHGKIC 75 >gi|150396769|ref|YP_001327236.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150028284|gb|ABR60401.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 246 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L + G + EIA LG+S TV ++ +A KL+ V+ QA+A A+R Sbjct: 182 RLTGRETEVLTWSAAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHA 241 Query: 233 YI 234 I Sbjct: 242 LI 243 >gi|37523973|ref|NP_927350.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214979|dbj|BAC92345.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 229 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 40/64 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE LQL +G ++++IA++L ++V TV ++ + KL A +R QA A+R Sbjct: 165 ASPLTERELEVLQLIVEGRSNQDIADQLYITVGTVKTHVRNILSKLCADDRTQAAVTALR 224 Query: 231 FGYI 234 G + Sbjct: 225 AGLV 228 >gi|239979192|ref|ZP_04701716.1| two-component system response regulator [Streptomyces albus J1074] gi|291451071|ref|ZP_06590461.1| two-component system response regulator [Streptomyces albus J1074] gi|291354020|gb|EFE80922.1| two-component system response regulator [Streptomyces albus J1074] Length = 213 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L + DG T +IA +L LS TV YL +A K NR++A+ +A R G+ Sbjct: 153 LTGRERDALNASADGATVADIAVRLRLSESTVRNYLSAAIGKTSTRNRMEAVREARRQGW 212 Query: 234 I 234 + Sbjct: 213 L 213 >gi|241205473|ref|YP_002976569.1| MerR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859363|gb|ACS57030.1| transcriptional regulator, MerR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 230 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT +E CL+L +GY+++ IA L L +K A NR QAIAKA+ G Sbjct: 167 SLTAQERRCLELMAEGYSTQRIARALDLKHDETRDLEAGIILKFRANNRFQAIAKAVLLG 226 Query: 233 YI 234 + Sbjct: 227 IV 228 >gi|72161171|ref|YP_288828.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71914903|gb|AAZ54805.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 221 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE + L G+G ++EEIA +L LS TV ++ A KL +R Q + A G Sbjct: 154 DLTDREREVVALVGEGLSNEEIAARLVLSPATVKTHVSRAMAKLRVRDRAQLVVVAYETG 213 Query: 233 YIC 235 + Sbjct: 214 LVA 216 >gi|27468487|ref|NP_765124.1| two-component response regulator [Staphylococcus epidermidis ATCC 12228] gi|57867340|ref|YP_188991.1| DNA-binding response regulator VraR [Staphylococcus epidermidis RP62A] gi|251809910|ref|ZP_04824383.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282874566|ref|ZP_06283451.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293367802|ref|ZP_06614451.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81674015|sp|Q5HN50|VRAR_STAEQ RecName: Full=Response regulator protein vraR gi|81842704|sp|Q8CNP9|VRAR_STAES RecName: Full=Response regulator protein vraR gi|27316034|gb|AAO05168.1|AE016749_114 two-component response regulator [Staphylococcus epidermidis ATCC 12228] gi|57637998|gb|AAW54786.1| DNA-binding response regulator VraR [Staphylococcus epidermidis RP62A] gi|251806575|gb|EES59232.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281296705|gb|EFA89214.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291318141|gb|EFE58538.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329726870|gb|EGG63328.1| response regulator protein VraR [Staphylococcus epidermidis VCU144] gi|329734717|gb|EGG71023.1| response regulator protein VraR [Staphylococcus epidermidis VCU045] gi|329734803|gb|EGG71108.1| response regulator protein VraR [Staphylococcus epidermidis VCU028] Length = 209 Score = 43.9 bits (102), Expect = 0.016, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KKR+ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|332671746|ref|YP_004454754.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340784|gb|AEE47367.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 857 Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AA LT RE +L GDG ++ EIAE+L +SV TV +L KL +R +A+A+ Sbjct: 797 AAAALTAREHEVARLVGDGLSNPEIAERLTISVKTVENHLNRVLHKLGVADRAD-VARAV 855 Query: 230 R 230 + Sbjct: 856 Q 856 >gi|326331580|ref|ZP_08197870.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325950836|gb|EGD42886.1| transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 297 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L+ G ++ E AE LG+ TV +YL SAT KL+A NR+ A+ A G Sbjct: 235 RLAAREIDVLRQVALGNSNREAAEALGIVESTVKSYLKSATRKLNANNRVHAVRMAREAG 294 Query: 233 YI 234 I Sbjct: 295 LI 296 >gi|126650269|ref|ZP_01722497.1| two-component response regulator [Bacillus sp. B14905] gi|126592919|gb|EAZ86901.1| two-component response regulator [Bacillus sp. B14905] Length = 208 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 5/81 (6%) Query: 159 DFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 DFL+ ++RS+ L+++E LQL G T++ IA +G++ TV YL Sbjct: 127 DFLDFVQQRSNLPNTQQEVLLSDKEQEILQLVAQGCTNKAIASAIGVTQRTVENYLSKLF 186 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 VKL+ +R +A+ A +I Sbjct: 187 VKLNVESRAEAVIVAKEKAWI 207 >gi|119471494|ref|ZP_01613935.1| putative transcriptional regulator, LuxR family protein [Alteromonadales bacterium TW-7] gi|119445593|gb|EAW26878.1| putative transcriptional regulator, LuxR family protein [Alteromonadales bacterium TW-7] Length = 218 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 47/99 (47%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + + L +++ A Q D L + LT+RE + + L +G Sbjct: 111 GIRLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTEGDIEPVKLTKREKAIISLMSNGS 170 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 ++EIAE+L +S HTV +L SA K NRI+ ++ A Sbjct: 171 KNKEIAEELSISPHTVKTHLYSAFRKTKCRNRIELLSWA 209 >gi|108801886|ref|YP_642083.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119871039|ref|YP_940991.1| regulatory protein, LuxR [Mycobacterium sp. KMS] gi|108772305|gb|ABG11027.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119697128|gb|ABL94201.1| regulatory protein, LuxR [Mycobacterium sp. KMS] Length = 937 Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 35/59 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+R ++ LT +E +LA DG T++EI +L +SVHTV +L VK+ +R Q Sbjct: 864 KQRLTSGDELTAQEAQIARLAADGLTNQEIGAQLFISVHTVEWHLRKVFVKVGITSRRQ 922 >gi|330873242|gb|EGH07391.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 910 Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 10/125 (8%) Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 G LLPF + H+ + + F L N + E AC++ + + Sbjct: 795 GALLPFRVLLAEHSQWLHEQ---LLQATFCKLCN-ALREKFPACFKPAA------PEPAH 844 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A Sbjct: 845 GSDCLSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAK 904 Query: 230 RFGYI 234 G + Sbjct: 905 ILGLL 909 >gi|296128146|ref|YP_003635396.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296019961|gb|ADG73197.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 225 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 11/117 (9%) Query: 129 NGYVIFTSEFLMLANEV--IIEAHGACYQVITDFL--ELFKKRSS----AARN---LTER 177 +G+++ +E L V + HG +T + E+ +R + AAR LT R Sbjct: 105 SGFLLKDAEPATLVEAVRSVAAGHGMLANALTRRVLREVVTRRRTQPVTAARASELLTPR 164 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L L G ++EEIA +L L V TV ++L A KL +R+QA+ A + G + Sbjct: 165 ELDILLLLAQGMSNEEIARELYLEVSTVKSHLARAMPKLGVRSRLQAVVWAYQNGIV 221 >gi|254516346|ref|ZP_05128405.1| transcriptional regulator [gamma proteobacterium NOR5-3] gi|219674769|gb|EED31136.1| transcriptional regulator [gamma proteobacterium NOR5-3] Length = 925 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+L +++I +L +S HTV +L KL+ NR AIAKA R G Sbjct: 857 DLTNRELDILELLAQRLQNKQIGARLNISTHTVKDHLKHVYQKLEVSNRRDAIAKATRTG 916 Query: 233 YI 234 + Sbjct: 917 LL 918 >gi|148994461|ref|ZP_01823662.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|168488084|ref|ZP_02712283.1| response regulator [Streptococcus pneumoniae SP195] gi|168490693|ref|ZP_02714836.1| response regulator [Streptococcus pneumoniae CDC0288-04] gi|168494570|ref|ZP_02718713.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|225860419|ref|YP_002741928.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|147927210|gb|EDK78245.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|183572895|gb|EDT93423.1| response regulator [Streptococcus pneumoniae SP195] gi|183575039|gb|EDT95567.1| response regulator [Streptococcus pneumoniae CDC0288-04] gi|183575541|gb|EDT96069.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|225726539|gb|ACO22390.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|332075238|gb|EGI85708.1| response regulator [Streptococcus pneumoniae GA17570] Length = 210 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS L + V A G A Q ++ +E + LT RE LQL Sbjct: 98 KGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA+ L +S+ TV ++ + KL+ +R QA Sbjct: 158 KGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|77361820|ref|YP_341395.1| transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76876731|emb|CAI87953.1| putative transcriptional regulator, LuxR family [Pseudoalteromonas haloplanktis TAC125] Length = 218 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 47/99 (47%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + + L +++ A Q D L + LT+RE + + L +G Sbjct: 111 GIRLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTEGDIEPVKLTKREKAIISLMSNGS 170 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 ++EIAE+L +S HTV +L SA K NRI+ ++ A Sbjct: 171 KNKEIAEELSISPHTVKTHLYSAFRKTKCRNRIELLSWA 209 >gi|313497133|gb|ADR58499.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 905 Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+L G ++++I+E+L +S+HTV + KL R QA+AKA G Sbjct: 844 LSGREMAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGVERRTQAVAKAKFLGL 903 Query: 234 I 234 + Sbjct: 904 L 904 >gi|300088662|ref|YP_003759184.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528395|gb|ADJ26863.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 248 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ RE S L+L DG T++EIA KL S V Y+ KL+ NR Q KA + Sbjct: 185 QQLSPREMSTLRLVSDGMTNKEIAMKLNCSESAVKGYVTRIMNKLNVTNRTQIALKASQL 244 Query: 232 GYI 234 I Sbjct: 245 NII 247 >gi|282865409|ref|ZP_06274461.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282559882|gb|EFB65432.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 203 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L+ A DG T+ EIA + LS TV YL +A K A NR +A+ A Sbjct: 140 ANPLTDREREVLRAAADGATNVEIAGAMHLSPGTVRNYLSTAIQKTAARNRTEAVRVAGE 199 Query: 231 FGYI 234 G++ Sbjct: 200 KGWL 203 >gi|209515006|ref|ZP_03263875.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209504632|gb|EEA04619.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 222 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L + DG ++EIA L +S +TV +L + KL A NR +A+ +R G+ Sbjct: 160 LTSREIEVLAMLADGLGNKEIARHLDISDNTVKFHLSAIFGKLGATNRTEAVMLGMRHGF 219 Query: 234 I 234 I Sbjct: 220 I 220 >gi|156742230|ref|YP_001432359.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156233558|gb|ABU58341.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 254 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 7/99 (7%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIA 195 N+V+++ +V++ F L + +S L++RE L+ G ++ EIA Sbjct: 135 NDVVLDDPKVAGRVLSQFRNLPQDVTSLQEMEFPLFTPLSDREIEVLERIAAGGSNREIA 194 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L +S TV ++ S KL +R QA+ A+R G+I Sbjct: 195 EALHISTQTVKNHISSILRKLSLNDRTQAVLYALRRGWI 233 >gi|124268980|ref|YP_001022984.1| LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124261755|gb|ABM96749.1| putative LuxR-family transcriptional regulator [Methylibium petroleiphilum PM1] Length = 237 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 30/178 (16%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF-AGIAFPVRL--GFHKNG 130 D + H +PIIW +++ S+GQ S+ F GI + + G H Sbjct: 72 DPVMQHCKRQSVPIIW----DQSTYVSAGQGSMWEAQARFGFRTGICLALHMPEGRH--- 124 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAAR------------NLTE 176 +VI ++ + + G +++ D L+LF + +A R LT Sbjct: 125 FVIGVDR-----DQALPKDRGEVTRLVAD-LQLFAVHAQDTAMRVLVPERLQLERPKLTP 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ DG T+ E+ +G+S T ++ +A KL N+ QA+ KA+R G + Sbjct: 179 RELDSLRWTMDGKTAWEVGSIMGISERTAVLHINNAMHKLACTNKHQAVLKALRLGLL 236 >gi|311031073|ref|ZP_07709163.1| two-component response regulator [Bacillus sp. m3-13] Length = 213 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE S LQL G+G ++EIAE L LS+ TV ++ KL +R Q AIR G Sbjct: 153 LTSRERSILQLVGEGKNNQEIAEALYLSIGTVKNHVTVILQKLGLRDRTQLAIFAIRNGV 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|297199299|ref|ZP_06916696.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197717164|gb|EDY61198.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 210 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ + DG T +IA++L LS TV YL SA K NR++A+ A + G+ Sbjct: 150 LTGRECDVLRASTDGATVADIADRLHLSESTVRNYLSSAIGKTGTRNRMEAVRAARQQGW 209 Query: 234 I 234 + Sbjct: 210 L 210 >gi|160879389|ref|YP_001558357.1| two component LuxR family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428055|gb|ABX41618.1| two component transcriptional regulator, LuxR family [Clostridium phytofermentans ISDg] Length = 207 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 3/72 (4%) Query: 156 VITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 VIT +L +K+ A LT++E L + +G +++EIA+ + LS TV YL + Sbjct: 127 VITKLPDLMQKKKEFPYGAYQLTKKEYELLTMVAEGLSNKEIADVMFLSEGTVRNYLSNL 186 Query: 213 TVKLDAVNRIQA 224 +KLD +R QA Sbjct: 187 MLKLDVRDRTQA 198 >gi|298244807|ref|ZP_06968613.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552288|gb|EFH86153.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1076 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 159 DFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 D L L ++R A A+ L+ RE L L G G +++EIA +L +++ TV ++ + L Sbjct: 1000 DQLALLRERMRAGAQILSPREREVLLLLGTGASNQEIANQLIITLGTVKRHVNTILAALQ 1059 Query: 218 AVNRIQAIAKA 228 NR+QA+A+A Sbjct: 1060 VSNRMQAVARA 1070 >gi|297162688|gb|ADI12400.1| two component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G ++I +F K+ + AA LTERE + L G G ++EEIA +L +S T + Sbjct: 133 GVTRRLIAEFAARSKEPAPAAVLAELTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 192 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + +KL A +R Q + A G + Sbjct: 193 VSRTMIKLGARDRAQLVVLAYESGLV 218 >gi|223935483|ref|ZP_03627400.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895893|gb|EEF62337.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 233 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ F + + R R L+ RE L + GY+++EIA+K+ LSV TV ++L Sbjct: 148 RVVESFRRVSRNRQDTIR-LSAREEEVLVMLSKGYSNKEIADKIDLSVETVRSHLKHIYE 206 Query: 215 KLDAVNRIQAIAK 227 K+ +R +A+A+ Sbjct: 207 KMHVRSRTEAVAR 219 >gi|149003489|ref|ZP_01828363.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|169833867|ref|YP_001693899.1| response regulator [Streptococcus pneumoniae Hungary19A-6] gi|194398711|ref|YP_002037067.1| response regulator [Streptococcus pneumoniae G54] gi|225853962|ref|YP_002735474.1| response regulator [Streptococcus pneumoniae JJA] gi|237649348|ref|ZP_04523600.1| response regulator [Streptococcus pneumoniae CCRI 1974] gi|237821532|ref|ZP_04597377.1| response regulator [Streptococcus pneumoniae CCRI 1974M2] gi|147758425|gb|EDK65424.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|168996369|gb|ACA36981.1| response regulator [Streptococcus pneumoniae Hungary19A-6] gi|194358378|gb|ACF56826.1| response regulator TCS03 [Streptococcus pneumoniae G54] gi|225723015|gb|ACO18868.1| response regulator [Streptococcus pneumoniae JJA] Length = 210 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS L + V A G A Q ++ +E + LT RE LQL Sbjct: 98 KGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA+ L +S+ TV ++ + KL+ +R QA Sbjct: 158 KGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|157502119|ref|YP_001485218.1| putative two-component response regulator [Bacillus thuringiensis] gi|87133424|gb|ABD24334.1| putative two-component response regulator [Bacillus thuringiensis] Length = 232 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G GY+++++ E LS T+ ++ S KL+ +R+ A+ KA++ G+ Sbjct: 169 LTNKEWDILEGLGKGYSNQQLTETFELSDKTIKNHVSSILKKLEVKDRLNAVLKALKKGW 228 Query: 234 I 234 I Sbjct: 229 I 229 >gi|15893532|ref|NP_346881.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023075|gb|AAK78221.1|AE007537_6 Response regulator (CheY-like recever domain and HTH DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325507651|gb|ADZ19287.1| Response regulator (CheY-like recever domain and HTH DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 208 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Query: 155 QVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + I++F++ K + + NLTERE L+ GDG +++EIA KL LS TV Y+ S Sbjct: 130 KTISNFIKEDKSNNGLEQYNLTEREMEVLRNIGDGLSNKEIASKLYLSEGTVRNYITSLL 189 Query: 214 VKLDAVNRIQ 223 KL+ +R Q Sbjct: 190 EKLELRDRTQ 199 >gi|15900310|ref|NP_344914.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|15902388|ref|NP_357938.1| DNA-binding response regulator [Streptococcus pneumoniae R6] gi|111657155|ref|ZP_01407935.1| hypothetical protein SpneT_02001620 [Streptococcus pneumoniae TIGR4] gi|116517140|ref|YP_815865.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148988147|ref|ZP_01819610.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|148996798|ref|ZP_01824516.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|149006139|ref|ZP_01829868.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|149012131|ref|ZP_01833240.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|168485529|ref|ZP_02710037.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|168576782|ref|ZP_02722640.1| response regulator [Streptococcus pneumoniae MLV-016] gi|182683352|ref|YP_001835099.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|221231258|ref|YP_002510410.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225856124|ref|YP_002737635.1| response regulator [Streptococcus pneumoniae P1031] gi|225858242|ref|YP_002739752.1| response regulator [Streptococcus pneumoniae 70585] gi|298231095|ref|ZP_06964776.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254642|ref|ZP_06978228.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502187|ref|YP_003724127.1| LuxR family response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303255739|ref|ZP_07341782.1| response regulator protein [Streptococcus pneumoniae BS455] gi|303259462|ref|ZP_07345439.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|303262993|ref|ZP_07348927.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|303267350|ref|ZP_07353209.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|303269845|ref|ZP_07355590.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|307067043|ref|YP_003876009.1| CheY-like receiver/HTH DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307126599|ref|YP_003878630.1| response regulator [Streptococcus pneumoniae 670-6B] gi|5830527|emb|CAB54571.1| response regulator [Streptococcus pneumoniae] gi|14971857|gb|AAK74554.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|15457902|gb|AAK99148.1| Response regulator [Streptococcus pneumoniae R6] gi|116077716|gb|ABJ55436.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147757373|gb|EDK64412.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147762495|gb|EDK69456.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147763733|gb|EDK70667.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147926611|gb|EDK77684.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|182628686|gb|ACB89634.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|183571158|gb|EDT91686.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|183577579|gb|EDT98107.1| response regulator [Streptococcus pneumoniae MLV-016] gi|220673718|emb|CAR68214.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225722011|gb|ACO17865.1| response regulator [Streptococcus pneumoniae 70585] gi|225724954|gb|ACO20806.1| response regulator [Streptococcus pneumoniae P1031] gi|298237782|gb|ADI68913.1| LuxR family response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301793635|emb|CBW36018.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301801302|emb|CBW33982.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302597299|gb|EFL64402.1| response regulator protein [Streptococcus pneumoniae BS455] gi|302635884|gb|EFL66385.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|302639396|gb|EFL69854.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|302640613|gb|EFL71015.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|302643121|gb|EFL73409.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|306408580|gb|ADM84007.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Streptococcus pneumoniae AP200] gi|306483661|gb|ADM90530.1| response regulator [Streptococcus pneumoniae 670-6B] gi|332076827|gb|EGI87289.1| response regulator [Streptococcus pneumoniae GA17545] gi|332077675|gb|EGI88136.1| response regulator [Streptococcus pneumoniae GA41301] Length = 210 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS L + V A G A Q ++ +E + LT RE LQL Sbjct: 98 KGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA+ L +S+ TV ++ + KL+ +R QA Sbjct: 158 KGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|330504873|ref|YP_004381742.1| regulatory protein LuxR [Pseudomonas mendocina NK-01] gi|328919158|gb|AEB59989.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01] Length = 913 Score = 43.9 bits (102), Expect = 0.017, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + LQL G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 852 LSGRELAVLQLIARGCSNQEISERLFISLHTVKTHARHINSKLGVERRTQAVARAKGLGL 911 Query: 234 I 234 + Sbjct: 912 L 912 >gi|312867898|ref|ZP_07728103.1| putative oxygen regulatory protein NreC [Streptococcus parasanguinis F0405] gi|311096653|gb|EFQ54892.1| putative oxygen regulatory protein NreC [Streptococcus parasanguinis F0405] Length = 210 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 3/113 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 +PV L GY++ TS + V A G A ++ +E K + +LT R Sbjct: 90 YPV-LDAGAKGYILKTSSATEILQAVRKVAKGEFAIETEVSQKVESRKNHAELHDDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 149 ERDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFR 201 >gi|251795693|ref|YP_003010424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. JDR-2] gi|247543319|gb|ACT00338.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. JDR-2] Length = 866 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ G+G ++EEI +L LS TV Y + KL NR+QAI++A G Sbjct: 805 KLTGREREVLRKIGEGLSNEEIGGQLFLSTGTVKKYAYNIYEKLQVKNRVQAISRAKEMG 864 Query: 233 YI 234 + Sbjct: 865 LL 866 >gi|254430340|ref|ZP_05044043.1| regulatory protein, LuxR [Cyanobium sp. PCC 7001] gi|197624793|gb|EDY37352.1| regulatory protein, LuxR [Cyanobium sp. PCC 7001] Length = 99 Score = 43.9 bits (102), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 39/69 (56%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + S R+L+ERE + L +G T++EIA L +S TV+ ++ + K A NR+ + Sbjct: 16 QQSQERDLSERELEIIALVAEGLTNQEIAGTLTISKRTVDNHVSNIFTKTGAKNRVALLN 75 Query: 227 KAIRFGYIC 235 A+ G IC Sbjct: 76 WAMDHGKIC 84 >gi|332202293|gb|EGJ16362.1| response regulator [Streptococcus pneumoniae GA41317] Length = 210 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS L + V A G A Q ++ +E + LT RE LQL Sbjct: 98 KGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA+ L +S+ TV ++ + KL+ +R QA Sbjct: 158 KGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|311897337|dbj|BAJ29745.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 222 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G+G ++ EIA++L L TV ++ + KL A NR+QA A R G Sbjct: 154 RLTGRELDVLALLGEGLSNAEIADRLFLGTGTVKDHISAILGKLGAANRVQAAVIAHRAG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|260578331|ref|ZP_05846246.1| LuxR family bacterial regulatory protein [Corynebacterium jeikeium ATCC 43734] gi|258603512|gb|EEW16774.1| LuxR family bacterial regulatory protein [Corynebacterium jeikeium ATCC 43734] Length = 288 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 1/99 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ MLAN V + +V+ D + + R L+ RE L G+T+ E A Sbjct: 190 SKLRMLANRVDDDDLRRDLEVLCDQM-VSPVRVKQTTKLSARELDVLACVALGHTNVEAA 248 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++G+ TV +YL S KL A R +A+ A R G + Sbjct: 249 AEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 287 >gi|256785392|ref|ZP_05523823.1| two-component system response regulator [Streptomyces lividans TK24] gi|289769288|ref|ZP_06528666.1| two-component system response regulator [Streptomyces lividans TK24] gi|289699487|gb|EFD66916.1| two-component system response regulator [Streptomyces lividans TK24] Length = 204 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L+ A DG T+ E+A L LS TV YL +A KL NR +A+ A Sbjct: 141 ANPLTDREREILRAAADGSTNAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVARN 200 Query: 231 FGYI 234 G++ Sbjct: 201 KGWL 204 >gi|254381845|ref|ZP_04997208.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194340753|gb|EDX21719.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 205 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 38/64 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L+ A G T+ E+AE+L LS TV YL +A KL + NR +A+ A Sbjct: 142 ANPLTDREREVLRAAEFGATNAELAERLHLSPGTVRNYLSTAIQKLASRNRAEAVRVARE 201 Query: 231 FGYI 234 G++ Sbjct: 202 KGWL 205 >gi|15965591|ref|NP_385944.1| putative transcription regulator HSL-dependent protein [Sinorhizobium meliloti 1021] gi|307302711|ref|ZP_07582467.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318559|ref|ZP_07597993.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15074772|emb|CAC46417.1| Quorum sensing system, AHL autoinducer-binding, luxR family, regulator of sinI [Sinorhizobium meliloti 1021] gi|306895899|gb|EFN26651.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306903075|gb|EFN33666.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 245 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L + G + EIA LG+S TV ++ +A KL+ V+ QA+A A+R Sbjct: 181 RLTGRETEVLTWSAAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHA 240 Query: 233 YI 234 I Sbjct: 241 LI 242 >gi|289768678|ref|ZP_06528056.1| two-component system response regulator [Streptomyces lividans TK24] gi|289698877|gb|EFD66306.1| two-component system response regulator [Streptomyces lividans TK24] Length = 220 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R +TERE L+L +G+TS+EI E L +S TV + + KL +R++ AIR Sbjct: 156 RPITEREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGVRDRLELTRYAIRA 215 Query: 232 GYI 234 G I Sbjct: 216 GLI 218 >gi|282863833|ref|ZP_06272891.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282561534|gb|EFB67078.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 219 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Query: 155 QVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 Q++ + + AAR+ LT RE L+L DG ++ EIA L +S TV ++ Sbjct: 137 QLVGRYAARIRPTGDAARDIPLTPRELEVLRLIADGLSNNEIAAALVISRETVKTFVSRI 196 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA+ A R G + Sbjct: 197 LTKLGLRDRVQAVIYAYRQGLV 218 >gi|260769964|ref|ZP_05878897.1| transcriptional regulator VpsT [Vibrio furnissii CIP 102972] gi|260615302|gb|EEX40488.1| transcriptional regulator VpsT [Vibrio furnissii CIP 102972] Length = 223 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A LT RE ++L G G ++ EIA+KL +S +TV +L + K++A NR+QA+ Sbjct: 153 SQAYTKLTRREQQIIKLLGSGASNIEIADKLYVSENTVKTHLHNVFKKINAKNRLQALIW 212 Query: 228 A 228 A Sbjct: 213 A 213 >gi|291299028|ref|YP_003510306.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568248|gb|ADD41213.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 35/58 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RET L G +++EIAE+L +S TV ++G A +KL A +R Q + A R Sbjct: 157 SLTARETEILGWVATGLSNDEIAERLVVSPATVRTHVGRAMMKLRARDRAQLVVIAYR 214 >gi|254461185|ref|ZP_05074601.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacterales bacterium HTCC2083] gi|206677774|gb|EDZ42261.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacteraceae bacterium HTCC2083] Length = 251 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 65/141 (46%), Gaps = 10/141 (7%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV--IIE 148 S +E+ VIE + Q SV G + F I G + T+ M +EV + Sbjct: 106 SEREKQVIEINQQHSVT-AGYSISFKAITS------RSKGAIALTARAGMSQDEVDAVWA 158 Query: 149 AHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 HG+ ++ + L R+LT+R+ L+ GDG T+++IA +GL+ TV Sbjct: 159 EHGSDIVLMNNIAHLKIMTLPLGGRSLTDRQREALEWVGDGKTTQDIALLMGLTAATVEK 218 Query: 208 YLGSATVKLDAVNRIQAIAKA 228 +L A V L QA+ KA Sbjct: 219 HLRLARVALSVETTAQAVLKA 239 >gi|183980166|ref|YP_001848457.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] gi|183173492|gb|ACC38602.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] Length = 220 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 8/103 (7%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKR--------SSAARNLTERETSCLQLAGDGYTS 191 ++ + ++ AC ++T E+ R + L+ RE L+ G T+ Sbjct: 118 LVGMDAVVHKDNACAVLVTAIEEVAAGRRFCDPVISTGNPLELSRREYQVLERLAIGETN 177 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +IA+KL L+ +TV +Y+ S LDA NR+ A+ KA + G + Sbjct: 178 AQIAQKLQLAPNTVKSYVQSLLAHLDARNRLDAVIKAQQAGML 220 >gi|77463693|ref|YP_353197.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126462526|ref|YP_001043640.1| autoinducer-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|221639538|ref|YP_002525800.1| Autoinducer-binding domain-containing protein [Rhodobacter sphaeroides KD131] gi|332558550|ref|ZP_08412872.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N] gi|2360976|gb|AAC46021.1| autoinducer sythesis regulator [Rhodobacter sphaeroides] gi|77388111|gb|ABA79296.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides 2.4.1] gi|126104190|gb|ABN76868.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC 17029] gi|221160319|gb|ACM01299.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides KD131] gi|332276262|gb|EGJ21577.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N] Length = 233 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQ A G + +I + LG+S TV +L SA KL ++ +QA+ +AI G Sbjct: 169 RLSTREIEVLQWAAAGKSQTDIGDILGISHRTVEVHLRSAREKLGTLSTVQAVGRAIGLG 228 Query: 233 YI 234 + Sbjct: 229 LV 230 >gi|302531524|ref|ZP_07283866.1| two-component system response regulator [Streptomyces sp. AA4] gi|302440419|gb|EFL12235.1| two-component system response regulator [Streptomyces sp. AA4] Length = 208 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G G ++ EIAE+L L+ TV Y+ S KL R QA A R G Sbjct: 149 LTDRERDVLELIGQGLSNREIAERLFLAEKTVKNYVTSVLAKLGMQRRTQAAAWIARRG 207 >gi|239932838|ref|ZP_04689791.1| LuxR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291441189|ref|ZP_06580579.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291344084|gb|EFE71040.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 179 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE S L+L DG+ + EIA++L S TV + T + NR A+A A+R G Sbjct: 119 LSDRERSVLRLLADGHETAEIAQRLAYSPRTVTTVVHDITQRFRLRNRAHAVAYALRAGL 178 Query: 234 I 234 + Sbjct: 179 L 179 >gi|149018085|ref|ZP_01834544.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168482621|ref|ZP_02707573.1| response regulator [Streptococcus pneumoniae CDC1873-00] gi|147931649|gb|EDK82627.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|172043787|gb|EDT51833.1| response regulator [Streptococcus pneumoniae CDC1873-00] gi|332203553|gb|EGJ17620.1| response regulator [Streptococcus pneumoniae GA47368] Length = 210 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS L + V A G A Q ++ +E + LT RE LQL Sbjct: 98 KGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA+ L +S+ TV ++ + KL+ +R QA Sbjct: 158 KGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|219846976|ref|YP_002461409.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541235|gb|ACL22973.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 229 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L G T+ EIA +L +S TV ++ S KL +R QA+ A+R G+ Sbjct: 161 LSARELEVLELVAAGRTNREIAAQLDISNQTVKNHISSILRKLAVNDRTQAVVYAMRRGW 220 Query: 234 I 234 I Sbjct: 221 I 221 >gi|21224130|ref|NP_629909.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|256784790|ref|ZP_05523221.1| two-component regulator [Streptomyces lividans TK24] gi|2995293|emb|CAA18322.1| putative two-component regulator [Streptomyces coelicolor A3(2)] Length = 219 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R +TERE L+L +G+TS+EI E L +S TV + + KL +R++ AIR Sbjct: 155 RPITEREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGVRDRLELTRYAIRA 214 Query: 232 GYI 234 G I Sbjct: 215 GLI 217 >gi|85713529|ref|ZP_01044519.1| Transcriptional regulatory protein, LuxR family protein [Nitrobacter sp. Nb-311A] gi|85699433|gb|EAQ37300.1| Transcriptional regulatory protein, LuxR family protein [Nitrobacter sp. Nb-311A] Length = 191 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 35/72 (48%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L +K + A NLT RE LQ +G + EI L +S H V+ KL+A NR Sbjct: 119 LAQKYNPAPVNLTPREMDILQWMAEGKSDWEIGVILKVSEHFVDKIARQLRAKLNATNRT 178 Query: 223 QAIAKAIRFGYI 234 Q A A+R I Sbjct: 179 QTAATALRHNLI 190 >gi|317481525|ref|ZP_07940584.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] gi|316902311|gb|EFV24206.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] Length = 99 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 37/57 (64%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S + L+ RE L+L G+ S+EIA +LG+S++TVN + + KL+A N ++AI Sbjct: 35 SPDKQLSNREKEILRLIRQGFLSKEIAYQLGVSIYTVNNHRKNILSKLNANNIMEAI 91 >gi|300790143|ref|YP_003770434.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799657|gb|ADJ50032.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 217 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE + L G G ++ EI +L LS TV Y+ + K+ A NR+QA A R G Sbjct: 154 SLSEREREVVALIGQGLSNAEIGGRLHLSEATVKGYVSAVLSKIGAANRVQAALLAYRGG 213 Query: 233 YI 234 + Sbjct: 214 LL 215 >gi|294010459|ref|YP_003543919.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292673789|dbj|BAI95307.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 253 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 22/201 (10%) Query: 54 LHNYDLDSGDIPNILIETYGDDFL-------------FHFNSGLLP--IIWQSIQE--ET 96 LHN DL GD ++ + TY +L H P + W + + E Sbjct: 49 LHNIDLRRGDEQSLFLTTYPSAWLEEVLEERHYIEDPIHAACARTPSGLAWDRVGDMLEL 108 Query: 97 VIESSGQLSVRLEGGLLPFAGIAFPVRL-GFHKNGYVIFTSEFLMLANEVIIEAHGACYQ 155 G L + L +G + P+R G + + S L+ E ++ A Sbjct: 109 TPRQRGILDRARDHDL--ASGYSLPIRTPGEPEAIFTAARSRDEPLSAEEVLTARLLGSV 166 Query: 156 VITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 EL +R+ A L+ R+ C+ L G + EI + LGLS TV+ Y+ SA Sbjct: 167 AYDRARELLGERAGPLACVPLSPRQVECIALVAQGKSDWEIGQILGLSRDTVHEYVESAR 226 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 + R Q + +A+R G++ Sbjct: 227 RRYGVRRRTQLVLRAVRDGHL 247 >gi|318041781|ref|ZP_07973737.1| two-component system response regulator [Synechococcus sp. CB0101] Length = 228 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G T EIAE+L +S T Y L+ NR+QA+ K +R G Sbjct: 165 RLTPREYEVLDLLASGLTDREIAEQLVVSEETARTYTKRLLKTLEVNNRVQAVLKGMRCG 224 Query: 233 YI 234 + Sbjct: 225 MV 226 >gi|315283654|ref|ZP_07871783.1| transcriptional regulatory protein DegU [Listeria marthii FSL S4-120] gi|313612706|gb|EFR86719.1| transcriptional regulatory protein DegU [Listeria marthii FSL S4-120] Length = 69 Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI+ G+ Sbjct: 6 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGW 65 Query: 234 I 234 + Sbjct: 66 V 66 >gi|269219961|ref|ZP_06163815.1| two-component system response regulator [Actinomyces sp. oral taxon 848 str. F0332] gi|269210597|gb|EEZ76937.1| two-component system response regulator [Actinomyces sp. oral taxon 848 str. F0332] Length = 230 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 8/83 (9%) Query: 160 FLELFKKRSSAAR--------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +E K ++A R LTERE L+L G T+ EIA+ L ++ T+ ++G Sbjct: 142 LVEKLAKEATAMRATDPHILDGLTEREIEVLKLVAQGLTNGEIAKTLTVAEATIKTHIGH 201 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL A +R+QA+ A G + Sbjct: 202 IFYKLGARDRVQAVVLAYEAGLV 224 >gi|73662755|ref|YP_301536.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495270|dbj|BAE18591.1| response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 201 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 4/72 (5%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LFK+++ LT +E L+ G+G+TS+EI++ L LS T+ Y + KLDA NR Sbjct: 134 LFKEKNP----LTPKEQLVLREIGEGHTSKEISKHLFLSYGTIRNYTSTIIDKLDAENRF 189 Query: 223 QAIAKAIRFGYI 234 +A A G+I Sbjct: 190 EAWNIARNKGWI 201 >gi|297624009|ref|YP_003705443.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165189|gb|ADI14900.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 211 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 4/110 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQL 184 NGYV ++ L + + + G Y EL + S + LTERE S L Sbjct: 101 NGYVPKSALETQLLDAIRAVSRGEYYAPARLLAELARDLSESGPYRHVRLTERERSVLAR 160 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T +EIAE+LG+S TV Y A KL R + + A++ G I Sbjct: 161 IAQGCTYKEIAEELGISDKTVATYRERAAEKLGLKTRAELVRYALQHGLI 210 >gi|300088311|ref|YP_003758833.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528044|gb|ADJ26512.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 231 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L DG T+++IA +L +S T+ ++ + KL+A +R A AIR GY Sbjct: 159 LTQRERQILIRVTDGLTNKQIATELKISEQTIKNHISAILRKLNANDRAHAAVLAIRRGY 218 Query: 234 I 234 I Sbjct: 219 I 219 >gi|261736132|ref|YP_003257474.1| two component transcriptional regulator [Streptomyces sp. ZL12] gi|261349255|gb|ACX71187.1| two component transcriptional regulator [Streptomyces sp. ZL12] Length = 116 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Query: 164 FKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +R AR +T RE L+ A +G T++ IA LG+ V + + SA KL +R Sbjct: 26 LPRRPKQARTYITARELDVLRHAANGATNQSIAHHLGIGTEAVASRMQSAFRKLRVGDRA 85 Query: 223 QAIAKAIRFGYI 234 QA+A A+R G + Sbjct: 86 QAVAVALRLGLL 97 >gi|228969615|ref|ZP_04130410.1| two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228790104|gb|EEM37891.1| two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 130 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G GY+++++ E LS T+ ++ S KL+ +R+ A+ KA++ G+ Sbjct: 67 LTNKEWDILEGLGKGYSNQQLTETFELSDKTIKNHVSSILKKLEVKDRLNAVLKALKKGW 126 Query: 234 I 234 I Sbjct: 127 I 127 >gi|219849447|ref|YP_002463880.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543706|gb|ACL25444.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Chloroflexus aggregans DSM 9485] Length = 917 Score = 43.9 bits (102), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L+L +G ++ EIA L ++V TV +++ + KL +R QA+A+ R G Sbjct: 856 LSQREIEVLRLMAEGRSNHEIATSLVIAVSTVKSHINNIFNKLGVASRTQAVARGRRLGL 915 Query: 234 I 234 I Sbjct: 916 I 916 >gi|91789053|ref|YP_550005.1| LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91698278|gb|ABE45107.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 895 Score = 43.9 bits (102), Expect = 0.018, Method: Composition-based stats. Identities = 24/59 (40%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G + EIAE+L SV TV+ +L + KL +R +A+A A+ G Sbjct: 825 LTAREIEVLLLLCEGLKNSEIAERLCRSVRTVDHHLAAVFTKLGVASRTEAVAAALHAG 883 >gi|330947744|gb|EGH48203.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B] Length = 120 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 59 LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGL 118 Query: 234 I 234 + Sbjct: 119 L 119 >gi|238062419|ref|ZP_04607128.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237884230|gb|EEP73058.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 150 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%) Query: 139 LMLANEVIIEAHGACYQVITD-FLELFKKRSSAARNL-------TERETSCLQLAGDGYT 190 L+ V+ G +T ++ F +R AR L TERE L L G + Sbjct: 41 LLAGIRVVAAGEGLLAPTVTRRLIDEFARRPEPARPLPRRLEGVTEREREVLMLIARGLS 100 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E+AE+L LS+ TV ++G KL +R Q + A G + Sbjct: 101 NAELAEQLSLSLPTVKTHVGRLLTKLAVRDRAQLVIVAYETGLV 144 >gi|256421396|ref|YP_003122049.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256036304|gb|ACU59848.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 234 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 17/110 (15%) Query: 129 NGYVIFTSEFLMLANEVI-----------IEAHGACYQVITDFLELFKKRSSAARNLTER 177 +GY+I TS + + + ++ AH + D LE K + LT+R Sbjct: 100 SGYIIKTSRLMEIYHSIMDAVSEGGTLSPKAAHLLINYIAKDPLEDIKHK------LTKR 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 E L L +GY+ +E+AEKL ++V TVN +L KL+ + + I+K Sbjct: 154 EYELLALLKEGYSYKEMAEKLFVTVFTVNQHLKKIYQKLNVATKSELISK 203 >gi|302557405|ref|ZP_07309747.1| response regulator [Streptomyces griseoflavus Tu4000] gi|302475023|gb|EFL38116.1| response regulator [Streptomyces griseoflavus Tu4000] Length = 231 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G + EIA KL S TV L T +L NR A+A A+R G Sbjct: 170 GLTAREADVLRLVAEGLDTTEIAAKLAYSERTVKNVLHGLTTRLHLRNRAHAVAYALREG 229 Query: 233 YI 234 +I Sbjct: 230 FI 231 >gi|205375039|ref|ZP_03227830.1| DegU [Bacillus coahuilensis m4-4] Length = 225 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 18/123 (14%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA----------- 171 GY++ + L N V + + G Y ++ ++ +L K++ Sbjct: 100 GYLLKEMDADALVNAVKVVSEGGSYLHPKVTHNLVREYRQLIKEQHQQTVYQPVEIRRPL 159 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE LQL DG ++ I E L +S TV ++ + K++ +R QA+ AI+ Sbjct: 160 HLLTRRECEVLQLLADGCSNRTIGETLYISEKTVKNHVSNILQKMNVNDRTQAVVTAIKK 219 Query: 232 GYI 234 G++ Sbjct: 220 GWV 222 >gi|148241069|ref|YP_001220570.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146411445|gb|ABQ39898.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 243 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE CL DG T ++IAE LG+S V +L +A L A+ A+A A R G Sbjct: 182 LTQRERQCLAWISDGKTMQDIAELLGVSPRGVKFHLDNARRNLAALTLPHAVALAFRQGL 241 Query: 234 I 234 + Sbjct: 242 L 242 >gi|333027679|ref|ZP_08455743.1| putative two component transcriptional regulator [Streptomyces sp. Tu6071] gi|332747531|gb|EGJ77972.1| putative two component transcriptional regulator [Streptomyces sp. Tu6071] Length = 215 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R+LTERE L+L DG ++ EIA++L +S+HTV ++ K +R QA Sbjct: 154 RDLTEREVDVLRLIRDGLSNAEIADRLVVSLHTVKTHVSRVLTKTGCQSRAQA 206 >gi|146309197|ref|YP_001189662.1| two component LuxR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145577398|gb|ABP86930.1| two component transcriptional regulator, LuxR family [Pseudomonas mendocina ymp] Length = 220 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G+T+ EI E+LG++ T A++ KL +R QA + I G Sbjct: 153 LTPREHQVLELIAAGFTNREIGEELGIATGTAKAHVERVIGKLGVADRTQAAVQGIALGL 212 Query: 234 IC 235 + Sbjct: 213 VA 214 >gi|329934362|ref|ZP_08284441.1| two-component response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|329305958|gb|EGG49813.1| two-component response regulator, LuxR family [Streptomyces griseoaurantiacus M045] Length = 221 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L +G + EIAE+L LS TV ++ A KLDA +R Q +A A R G Sbjct: 157 LTAREREVTELVAEGKSDAEIAEQLFLSPLTVRTHVQRAKTKLDARSRAQLVAIAYRSG 215 >gi|319442522|ref|ZP_07991678.1| LuxR family transcriptional regulator [Corynebacterium variabile DSM 44702] Length = 281 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 1/99 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S MLAN V E +V+ D + + R L+ RE L G+T+ E A Sbjct: 183 SRLRMLANRVEDEEIRRDLEVLCDQM-VSPVRVKQTTKLSARELDVLSCVALGHTNVEAA 241 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +++G+ TV +YL S KL A R +A+ A R G + Sbjct: 242 DEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 280 >gi|317970291|ref|ZP_07971681.1| two-component system response regulator [Synechococcus sp. CB0205] Length = 228 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G T EIAE+L +S T Y L+ NR+QA+ K +R G Sbjct: 165 RLTPREYEVLDLLASGLTDREIAEQLVVSEETARTYTKRLLKTLEVNNRVQAVLKGMRCG 224 Query: 233 YI 234 + Sbjct: 225 MV 226 >gi|282866789|ref|ZP_06275826.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282558335|gb|EFB63900.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 225 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE Q DG + +IAE+L ++V TV A+ GS KL NR+Q Sbjct: 166 LTERERETAQAIADGLGNPQIAERLRITVATVKAHTGSLFAKLAVENRVQ 215 >gi|256819682|ref|YP_003140961.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM 7271] gi|256581265|gb|ACU92400.1| transcriptional regulator, LuxR family [Capnocytophaga ochracea DSM 7271] Length = 234 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L LA G++S+EIAE+L +S +TVN + + K + + I+AI A R G Sbjct: 174 LTPREKEILTLASQGFSSKEIAEQLFISTYTVNRHRQNIREKFNVESLIEAIDLARRKG 232 >gi|108805731|ref|YP_645668.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766974|gb|ABG05856.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 781 Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R A LT RE L+L G+G T ++A +L +S TVNA+L S KL +R A Sbjct: 711 EERGPAGAPLTPRELEVLRLVGEGMTDAQVAGRLFVSTRTVNAHLRSILRKLGVRSRAAA 770 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 771 VRLAQERGLL 780 >gi|68535465|ref|YP_250170.1| LuxR family transcriptional regulator [Corynebacterium jeikeium K411] gi|68263064|emb|CAI36552.1| putative transcriptional regulator (LuxR family) [Corynebacterium jeikeium K411] Length = 285 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 1/99 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ MLAN V + +V+ D + + R L+ RE L G+T+ E A Sbjct: 187 SKLRMLANRVDDDDLRRDLEVLCDQM-VSPVRVKQTTKLSARELDVLACVALGHTNVEAA 245 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++G+ TV +YL S KL A R +A+ A R G + Sbjct: 246 AEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 284 >gi|300782911|ref|YP_003763202.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792425|gb|ADJ42800.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 207 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++RET L+L G++++EIA++L S TV + L T + NR A+A A+R G Sbjct: 147 MSDRETEVLKLVAAGHSTQEIADELCYSQRTVKSILHDVTNRFQLRNRSHAVAYALREGL 206 Query: 234 I 234 I Sbjct: 207 I 207 >gi|291301148|ref|YP_003512426.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570368|gb|ADD43333.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 214 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G GY + +IAE+L L V TV ++ S K NR++ A+R G Sbjct: 151 KLTTREREVLALVGAGYANVDIAERLHLGVTTVKTHIASLMTKTGCSNRVRLAVLAVRSG 210 >gi|171910304|ref|ZP_02925774.1| response regulator receiver domain protein [Verrucomicrobium spinosum DSM 4136] Length = 220 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 12/113 (10%) Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACY---QVITDFLELFKKR-----SSAARNLTERE 178 GYV+ ++ L+LA +++ G Y ++ + LE+ SSA LT+RE Sbjct: 103 RGYVMKETAADMLVLAARRVLD--GGIYLSEKMSSLMLEMMAGHRKPVSSSALDRLTDRE 160 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LQL G G + IAE+L +SV TV+A+ + KL + + A+R+ Sbjct: 161 LEVLQLIGQGRATRHIAEQLHVSVRTVDAHRANIKEKLQLADGATLVRYAVRW 213 >gi|315128079|ref|YP_004070082.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] gi|315016592|gb|ADT69930.1| transcriptional regulator [Pseudoalteromonas sp. SM9913] Length = 218 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE + + L +G ++EIAE+L +S HTV +L SA K NRI+ ++ A Sbjct: 155 LTKREKAIISLMSNGSKNKEIAEELSISPHTVKTHLYSAFRKTKCRNRIELLSWA 209 >gi|311064069|ref|YP_003970794.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|310866388|gb|ADP35757.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] Length = 169 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R L++RE L L D Y++ EIAE+LG++ TV+ + A VKL R +A+ Sbjct: 108 SRTLSKREREVLGLYADNYSTAEIAERLGIADSTVSVVVRHAKVKLGVAARSEAV 162 >gi|271963445|ref|YP_003337641.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506620|gb|ACZ84898.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 226 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 11/112 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 LG G+++ + + L + A GA Y +VIT R AAR Sbjct: 94 LGEGAGGFLLKSGDPRELLAGIHAVAEGAAYLSPRVAHRVITQLTGGRMTRVVAAREQVA 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L L G+G ++ +IA +L L TV A++ + +L A NR+QA Sbjct: 154 ALTPRERDVLALVGEGLSNGQIARRLYLVEGTVKAHVSAILTRLGARNRVQA 205 >gi|291441518|ref|ZP_06580908.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291344413|gb|EFE71369.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 200 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE S L LA +G EIA +L LS TV Y+ +A K+ A NR+ AI Sbjct: 140 LTTRELSVLSLAAEGAPVAEIAARLHLSRGTVRNYMATAIRKVGARNRVDAI 191 >gi|239988349|ref|ZP_04709013.1| two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 224 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA--IAKA 228 AR LT RE L+L G ++EEI +L LS TV ++ S KL A NR+QA IA Sbjct: 152 ARLLTAREREVLELLPSGMSNEEIGRRLFLSRTTVRDHVSSLLAKLGAANRVQAAVIASG 211 Query: 229 IR 230 +R Sbjct: 212 MR 213 >gi|239820479|ref|YP_002947664.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] gi|239805332|gb|ACS22398.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 235 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+R+ L+ GDG TS+EIA L +S TV+ +L +A +L A + A A A R G Sbjct: 174 LTKRQVEVLRWTGDGKTSDEIAAILCISKPTVDFHLRNAMARLGASTKSSAAAFASRLGL 233 Query: 234 I 234 + Sbjct: 234 L 234 >gi|104780134|ref|YP_606632.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95109121|emb|CAK13818.1| putative transcriptional regulator, LuxR family [Pseudomonas entomophila L48] Length = 905 Score = 43.9 bits (102), Expect = 0.019, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 37/65 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A L+ RE + L+L G ++++I+E+L +S+HTV + KL R QA+A+A Sbjct: 840 ATEALSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHINGKLGVERRTQAVARAK 899 Query: 230 RFGYI 234 G + Sbjct: 900 SLGLL 904 >gi|120402652|ref|YP_952481.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119955470|gb|ABM12475.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 219 Score = 43.9 bits (102), Expect = 0.019, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I D+L + + T RE L+L +GY++ EIA LG+S TV+ + Sbjct: 133 GAVTALIQDYLNRARHGDDLPGTIVTSREEEVLKLIAEGYSTREIAGTLGISAKTVDRHR 192 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R+ AIR G I Sbjct: 193 ANLLAKLGLRDRLALTRYAIRVGLI 217 >gi|328886525|emb|CCA59764.1| hypothetical protein SVEN_6478 [Streptomyces venezuelae ATCC 10712] Length = 204 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/65 (43%), Positives = 34/65 (52%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A LT RE S L LA DG EIA L L+ TV Y+ S K+ A NR+ AI A Sbjct: 139 AAEMPLTRRELSVLSLAADGAPVAEIAATLFLTKGTVRNYMASVIRKVGARNRVDAIRIA 198 Query: 229 IRFGY 233 G+ Sbjct: 199 QGAGW 203 >gi|307296696|ref|ZP_07576515.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] gi|306877825|gb|EFN09050.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] Length = 253 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 22/201 (10%) Query: 54 LHNYDLDSGDIPNILIETYGDDFL-------------FHFNSGLLP--IIWQSIQE--ET 96 LHN DL GD ++ + TY +L H P + W + + E Sbjct: 49 LHNIDLRRGDEQSLFLTTYPSAWLEEVLEERHYIEDPIHAACARTPSGLAWDRVGDVLEL 108 Query: 97 VIESSGQLSVRLEGGLLPFAGIAFPVRL-GFHKNGYVIFTSEFLMLANEVIIEAHGACYQ 155 G L + L +G + P+R G + + S L+ E ++ A Sbjct: 109 TPRQRGILDRARDHDL--ASGYSLPIRTPGEPEAIFTAARSRDEPLSAEEVLTARLLGSV 166 Query: 156 VITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 EL +R+ A L+ R+ C+ L G + EI + LGLS TV+ Y+ SA Sbjct: 167 AYDRARELLGERAGPLACVPLSPRQVECIALVAQGKSDWEIGQILGLSRDTVHEYVESAR 226 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 + R Q + +A+R G++ Sbjct: 227 RRYGVRRRTQLVLRAVRDGHL 247 >gi|282899743|ref|ZP_06307706.1| orrA (Two Component Transcriptional Regulator, LuxR family) [Cylindrospermopsis raciborskii CS-505] gi|281195358|gb|EFA70292.1| orrA (Two Component Transcriptional Regulator, LuxR family) [Cylindrospermopsis raciborskii CS-505] Length = 238 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L DG ++ +IAEKL ++V TV ++ + KL A +R QA +A+R G Sbjct: 177 LTQRELEILELIVDGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 236 Query: 234 I 234 + Sbjct: 237 V 237 >gi|228943110|ref|ZP_04105598.1| two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228976354|ref|ZP_04136822.1| two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982234|ref|ZP_04142519.1| two-component response regulator [Bacillus thuringiensis Bt407] gi|228777493|gb|EEM25775.1| two-component response regulator [Bacillus thuringiensis Bt407] gi|228783361|gb|EEM31472.1| two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816564|gb|EEM62701.1| two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943882|gb|AEA19772.1| two-component response regulator [Bacillus thuringiensis serovar chinensis CT-43] Length = 232 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G GY+++++ E LS T+ ++ S KL+ +R+ A+ KA++ G+ Sbjct: 169 LTNKEWDILEGLGKGYSNQQLTETFELSDKTIKNHVSSILKKLEVKDRLNAVLKALKKGW 228 Query: 234 I 234 I Sbjct: 229 I 229 >gi|256380987|ref|YP_003104647.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255925290|gb|ACU40801.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 218 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + +S LTERE L L G ++ EIA KL LS TV ++G KL+ +R+QA+ Sbjct: 145 RDASVLDALTEREREVLVLIAKGMSNTEIARKLFLSEATVKTHVGRILAKLELRDRVQAV 204 Query: 226 AKAIRFGYI 234 A G + Sbjct: 205 VLAYETGLV 213 >gi|261420594|ref|YP_003254276.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319768265|ref|YP_004133766.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261377051|gb|ACX79794.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317113131|gb|ADU95623.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 224 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ S KL +R QA+ AI+ G+ Sbjct: 161 LTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSSILQKLSVNDRTQAVVVAIKNGW 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|162148610|ref|YP_001603071.1| LuxR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787187|emb|CAP56780.1| putative transcriptional Regulator, LuxR family [Gluconacetobacter diazotrophicus PAl 5] Length = 298 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L +RE CL LA G+ E A++L +S V YL +A L A N QA+A+A+ Sbjct: 223 RYLPKREAECLYLASMGFQGRETAKELHISEAAVRLYLTNARRHLAARNTTQAVARALVR 282 Query: 232 G 232 G Sbjct: 283 G 283 >gi|302539653|ref|ZP_07291995.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302457271|gb|EFL20364.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 219 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 38/63 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R +T+RE L+L +G+TS++IA+ L +SV TV + + KL +R++ AIR Sbjct: 155 RAITDREEEILKLVAEGHTSQQIADMLVISVKTVERHRANLLQKLGLKDRLELTRYAIRA 214 Query: 232 GYI 234 G I Sbjct: 215 GLI 217 >gi|302537766|ref|ZP_07290108.1| two component system DNA binding response regulator [Streptomyces sp. C] gi|302446661|gb|EFL18477.1| two component system DNA binding response regulator [Streptomyces sp. C] Length = 209 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 39/68 (57%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L L + + A LT+RE LQL DG ++++I+++L LS TV ++L KL + Sbjct: 133 LRLMDRMRTPAEALTKRELEVLQLVADGLSNQQISKRLFLSQATVKSHLVHVYAKLGVDS 192 Query: 221 RIQAIAKA 228 R A+A A Sbjct: 193 RTSAVAAA 200 >gi|94497064|ref|ZP_01303637.1| transcriptional regulatory protein [Sphingomonas sp. SKA58] gi|94423436|gb|EAT08464.1| transcriptional regulatory protein [Sphingomonas sp. SKA58] Length = 253 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 22/201 (10%) Query: 54 LHNYDLDSGDIPNILIETYGDDFL-------------FHFNSGLLP--IIWQSIQE--ET 96 LHN DL GD ++ + TY +L H P + W + + E Sbjct: 49 LHNIDLRRGDEQSLFLTTYPSAWLEEVLEERHYLEDPIHAACARTPSGLAWDRVGDVLEL 108 Query: 97 VIESSGQLSVRLEGGLLPFAGIAFPVRL-GFHKNGYVIFTSEFLMLANEVIIEAHGACYQ 155 G L + L +G + P+R G + + S L+ E ++ A Sbjct: 109 TPRQRGILDRARDHDL--ASGYSLPIRTPGEPEAIFTAARSRDEPLSAEEVLTARLLGSV 166 Query: 156 VITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 EL +R+ A L+ R+ C+ L G + EI + LGLS TV+ Y+ SA Sbjct: 167 AYDRARELLGERAGPLACVPLSPRQVECIALVAQGKSDWEIGQILGLSRDTVHEYVESAR 226 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 + R Q + +A+R G++ Sbjct: 227 RRYGVRRRTQLVLRAVRDGHL 247 >gi|310821776|ref|YP_003954134.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|309394848|gb|ADO72307.1| DNA-binding response regulator, LuxR family [Stigmatella aurantiaca DW4/3-1] Length = 254 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 35/64 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L++RE LQL G ++ E A L LS T+ +L KL+ NR++A+ + IR Sbjct: 190 KPLSDREREILQLIAKGVSNSEAARLLNLSKATIRTHLEHIYRKLEVTNRVEAVTEGIRK 249 Query: 232 GYIC 235 G I Sbjct: 250 GLIS 253 >gi|259415201|ref|ZP_05739123.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] gi|259349111|gb|EEW60865.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] Length = 239 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE+ L L +G + AE + +S HT+ Y+ A KL A N A+A+A+ G Sbjct: 177 LSMRESEALSLLAEGMSRARAAEAMDISEHTLRVYIEGARSKLQAQNTTHAVARAVTMGL 236 Query: 234 I 234 I Sbjct: 237 I 237 >gi|239939391|ref|ZP_04691328.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 325 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 2/88 (2%) Query: 149 AHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + G ++I +F K+ ++AA LTERE + L G G ++EEIA +L +S T Sbjct: 232 SPGVTRRLIAEFAARSKEPTAAASLALLTEREREVMALVGIGLSNEEIARRLVVSPLTAK 291 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ VKL A +R Q + A G + Sbjct: 292 THVSRTMVKLGARDRAQLVVLAYESGLV 319 >gi|322437485|ref|YP_004219575.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321165378|gb|ADW71081.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 244 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 39/64 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +R L+ERE L+L G +++EIA +L ++ T+ ++ S KL A +R QA+ AI+ Sbjct: 179 SRKLSEREIEVLRLVAKGNSNKEIAAQLFVTEDTIKVHVRSMLAKLHASDRTQAVVIAIQ 238 Query: 231 FGYI 234 G + Sbjct: 239 RGLL 242 >gi|298249976|ref|ZP_06973780.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547980|gb|EFH81847.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L G S+EIA+ LG+S TV A+L + KL+ +R A+A A+ G Sbjct: 163 ELTERERAILIAVAHGERSKEIAQHLGVSERTVKAHLTNIYTKLNVDSRASAVASALERG 222 Query: 233 YI 234 + Sbjct: 223 LL 224 >gi|302530377|ref|ZP_07282719.1| two-component system response regulator [Streptomyces sp. AA4] gi|302439272|gb|EFL11088.1| two-component system response regulator [Streptomyces sp. AA4] Length = 217 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE + L G G ++ EI +L LS TV Y+ + K+ A NR+QA A R G Sbjct: 154 SLSEREREVVALIGQGLSNAEIGGRLHLSEATVKGYVSAVLSKIGAANRVQAALLAYRGG 213 Query: 233 YI 234 + Sbjct: 214 LL 215 >gi|221633346|ref|YP_002522571.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] gi|221155795|gb|ACM04922.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] Length = 246 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 43/79 (54%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ ++ L K + ++L++RE + L+L GY + +IA+ L L+ TV L + K Sbjct: 159 LMREYQRLLTKAPTRGQDLSDRELTMLRLLAQGYNNRQIADALNLAESTVKNNLSALFQK 218 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +R QA+ AI G + Sbjct: 219 LGVRDRTQAVIYAISHGLV 237 >gi|254453006|ref|ZP_05066443.1| autoinducer-binding transcriptional regulator, LuxR family [Octadecabacter antarcticus 238] gi|198267412|gb|EDY91682.1| autoinducer-binding transcriptional regulator, LuxR family [Octadecabacter antarcticus 238] Length = 223 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 3/103 (2%) Query: 129 NGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLA 185 G T++ M +EV I HG VI + + L + + R++T+R+ LQ Sbjct: 107 KGATALTAKAGMSQDEVEEIWAKHGDEITVINNVMHLKIQTLPYSQRHMTKRQREVLQWV 166 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 GDG T+++IA L L+ T+ +L A LD QA+ KA Sbjct: 167 GDGKTTQDIAILLELTPATIEKHLRLAREALDVETTAQAVLKA 209 >gi|159897512|ref|YP_001543759.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890551|gb|ABX03631.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 213 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L+L +G T+ +IA +L +SV TV ++ + KLD +R + AIR G Sbjct: 150 DLTDRELEVLKLVAEGLTNRQIAAQLVISVKTVQSHRTNIMEKLDLHDRTDLVKYAIRRG 209 Query: 233 YI 234 I Sbjct: 210 MI 211 >gi|297197302|ref|ZP_06914699.1| two component transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297146673|gb|EFH28280.1| two component transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 228 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 10/112 (8%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITD-FLELFKKRSSAARN---------LTERETSCLQ 183 T E L+ A ++ IT +E F +R A + LT RE L+ Sbjct: 108 VTPEHLVAAVRLVRSGDALLAPTITRRLIERFAQREEAVPSADVHRDLSGLTPRELEVLR 167 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G ++ E+AE+L LS TV ++G KL+ +R+QA+ A G I Sbjct: 168 LLATGLSNAELAERLFLSPTTVKTHIGRILSKLELRDRVQAVVLAYESGLIT 219 >gi|2791836|gb|AAC38403.1| transcriptional activator CarR [Pectobacterium carotovorum subsp. carotovorum] Length = 244 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 166 KRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K ++RN L+ RET L L G T +E++ LG+S TV ++ ++ KLD +N Sbjct: 159 KPPDSSRNALLSPRETEVLFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRH 218 Query: 224 AIAKAIRFG 232 AI KA+ Sbjct: 219 AITKALELN 227 >gi|72160692|ref|YP_288349.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71914424|gb|AAZ54326.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 201 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ A G + IA L LS TV YL SA KL NRI AI KA G+ Sbjct: 141 LTAREIDVLRAASTGASVAAIARTLHLSEGTVRNYLSSAISKLGEANRIAAIRKANAMGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|56962510|ref|YP_174236.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56908748|dbj|BAD63275.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 199 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L +G T+++IA++L ++ TV Y+ KL+ NRI+AI+ + G+ Sbjct: 138 LTEREEQVLKLIAEGRTTQQIADELKITNGTVRNYVSVILDKLEVGNRIEAISYYQKKGW 197 Query: 234 I 234 + Sbjct: 198 L 198 >gi|329939256|ref|ZP_08288592.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301485|gb|EGG45379.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 238 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE + L G +++EIAE++ LS TV A++ A KL+A +R Q + A R G Sbjct: 172 LTPREREMVSLVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTGL 231 Query: 234 I 234 + Sbjct: 232 V 232 >gi|300788195|ref|YP_003768486.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797709|gb|ADJ48084.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 216 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 3/63 (4%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E ++R++ LTERE L G G ++ +IA +L L+ TV +Y+ VKLD NR Sbjct: 145 EDARRRTA---GLTERERDVLACLGSGLSNADIAARLHLAEATVKSYVSRMLVKLDCANR 201 Query: 222 IQA 224 QA Sbjct: 202 TQA 204 >gi|21224488|ref|NP_630267.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|4007711|emb|CAA22396.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 260 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I ++L+ + + + LT RE L+L +G++S+EIAE L +S+ TV + Sbjct: 174 GAVTALIRNYLDRVRHGEETSDHILTPREEEVLKLVAEGHSSKEIAEILFISIKTVQRHR 233 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G I Sbjct: 234 ANLLQKLGLRDRLELTRYAIRAGLI 258 >gi|322387271|ref|ZP_08060881.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321141800|gb|EFX37295.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 210 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY++ TS L + V A G A Q ++ +E + LT RE LQL Sbjct: 99 GYMLKTSSADELFHAVQKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIAK 158 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA++L +S+ TV ++ + KL+ +R QA Sbjct: 159 GYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|298251402|ref|ZP_06975205.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297545994|gb|EFH79862.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1093 Score = 43.5 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K R +L+ +E L+L GYT E+A+ L +SVHT+ + S KLD R +A Sbjct: 1024 KGRQQTVESLSPQELKVLRLLVAGYTYAEMAQTLIVSVHTIKTQVSSIYRKLDVSRRAEA 1083 Query: 225 IA 226 IA Sbjct: 1084 IA 1085 >gi|269956411|ref|YP_003326200.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305092|gb|ACZ30642.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 220 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LTERE L L G G ++ EIA++L +S HT ++ KL A +R Q + A Sbjct: 151 ALEHLTEREVEILTLVGSGLSNAEIADRLVISPHTAKTHVNRVMTKLHAHDRAQLVIAAY 210 Query: 230 RFGYI 234 G + Sbjct: 211 ENGLV 215 >gi|261405834|ref|YP_003242075.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329926559|ref|ZP_08280972.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5] gi|261282297|gb|ACX64268.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328939100|gb|EGG35463.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5] Length = 215 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 9/111 (8%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFL-ELFKKRSSAAR-----NLTERET 179 +GYV+ + L + + + G Y Q+ T + E KK S +A +L++RE Sbjct: 99 SGYVLKNAPDDELISAIRMVHKGGTYIHPQMATSLVREFIKKDSESAEQDPFNSLSQREI 158 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L L GY ++EIAEKL +SV TV A+ KL +R + + A++ Sbjct: 159 EILPLIAKGYGNKEIAEKLFVSVKTVEAHKAKIMEKLKLKSRPELVEYALK 209 >gi|125718762|ref|YP_001035895.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|323350426|ref|ZP_08086089.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|125498679|gb|ABN45345.1| Two-component system transcriptional regulator (CheY domain and HTH-like DNA-binding domain), putative [Streptococcus sanguinis SK36] gi|322123363|gb|EFX95041.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|327462857|gb|EGF09179.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] Length = 199 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +RN L+++E LQ A G +++EIAEKL LS TV Y+ + KL+A NR +A+ Sbjct: 135 SRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENRTEAVRIGQ 194 Query: 230 RFGYI 234 G++ Sbjct: 195 EKGWL 199 >gi|37519813|ref|NP_923190.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35210804|dbj|BAC88185.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 232 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 39/64 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE LQL G+++E IA++L ++V TV ++ + KL A +R QA A+R Sbjct: 168 ASPLTERELEVLQLIVQGHSNEGIAQQLYITVGTVKTHVRNILSKLCADDRTQAAVLALR 227 Query: 231 FGYI 234 G + Sbjct: 228 SGLV 231 >gi|329948078|ref|ZP_08294979.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523217|gb|EGF50318.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 244 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G ++ EIA+ L +S TV ++G+ KLD +R+QA+ A G Sbjct: 182 SLTPREKEILVLMSQGLSNAEIADHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETG 241 Query: 233 YIC 235 + Sbjct: 242 LMA 244 >gi|315225137|ref|ZP_07866954.1| LuxR family transcriptional regulator [Capnocytophaga ochracea F0287] gi|314944820|gb|EFS96852.1| LuxR family transcriptional regulator [Capnocytophaga ochracea F0287] Length = 237 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L LA G++S+EIAE+L +S +TVN + + K + + I+AI A R G Sbjct: 177 LTPREKEILTLASQGFSSKEIAEQLFISTYTVNRHRQNIREKFNVESLIEAIDIARRKG 235 >gi|255025548|ref|ZP_05297534.1| two-component response regulator DegU [Listeria monocytogenes FSL J2-003] Length = 117 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI+ G+ Sbjct: 54 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGW 113 Query: 234 I 234 + Sbjct: 114 V 114 >gi|190894996|ref|YP_001985289.1| transcriptional activator protein [Rhizobium etli CIAT 652] gi|190700657|gb|ACE94739.1| transcriptional activator protein [Rhizobium etli CIAT 652] gi|327193288|gb|EGE60194.1| transcriptional activator protein [Rhizobium etli CNPAF512] Length = 241 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE CL++ +G +++I +L +SV V YL SA KL +A+A+A Sbjct: 180 RLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARA 235 >gi|328881569|emb|CCA54808.1| two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 218 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G T+ EIA ++G+ TV ++ S K A +R QA+ A G Sbjct: 154 RLTEREAEVLRLVATGLTNAEIAGRMGVGPATVKTHVASVLAKSGARDRTQAVILAYESG 213 Query: 233 YI 234 ++ Sbjct: 214 FV 215 >gi|313606801|gb|EFR83477.1| transcriptional regulatory protein DegU [Listeria monocytogenes FSL F2-208] Length = 127 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI+ G+ Sbjct: 64 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGW 123 Query: 234 I 234 + Sbjct: 124 V 124 >gi|115371976|ref|ZP_01459288.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|115370941|gb|EAU69864.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 209 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+ G ++++IA++L ++ TV A++ KL +R QA+ +A+R G Sbjct: 146 LTERERQTLEAMARGRSNKQIAQELSITEATVKAHVTQILSKLGVDDRTQAVTRALRRGL 205 Query: 234 I 234 I Sbjct: 206 I 206 >gi|182436186|ref|YP_001823905.1| transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776812|ref|ZP_08236077.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|31044104|dbj|BAA33536.2| transcriptional regulator [Streptomyces griseus] gi|178464702|dbj|BAG19222.1| transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657145|gb|EGE41991.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 201 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 16/97 (16%) Query: 154 YQVITDFLELFKKRSSAARNLTE----------------RETSCLQLAGDGYTSEEIAEK 197 Y+ + D E+ K + R++ E RE S L +A G T IA + Sbjct: 105 YRPVDDLSEVMHKLADGGRHIDESLAFSLLQVADMPLSPRELSVLSMAEGGDTVAGIAGR 164 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L+ TV YL +A K A NR+ AI +A G+I Sbjct: 165 LHLTPGTVRNYLAAAIRKSGARNRLDAIRRAKEAGWI 201 >gi|116625456|ref|YP_827612.1| LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228618|gb|ABJ87327.1| transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 178 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + A LT RE L++ +G ++ IA KLG+S HTV ++ KL+A R +A+ Sbjct: 111 AVAGPLTPRELEVLRMLAEGAANKNIAWKLGISEHTVKFHVAQILGKLNAGTRTEAVTLG 170 Query: 229 IRFGYI 234 IR G I Sbjct: 171 IRKGLI 176 >gi|319953755|ref|YP_004165022.1| two component transcriptional regulator, luxr family [Cellulophaga algicola DSM 14237] gi|319422415|gb|ADV49524.1| two component transcriptional regulator, LuxR family [Cellulophaga algicola DSM 14237] Length = 214 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 40/72 (55%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +F+ + +LT+RE L+L + T++EIA+KL LS HT+ +Y + KL+ N Sbjct: 141 MFENKKMEEISLTDREKEVLKLIAEENTTQEIADKLFLSKHTIESYRKNLISKLNVKNLA 200 Query: 223 QAIAKAIRFGYI 234 A++ G + Sbjct: 201 GLTKHALKMGLL 212 >gi|312863667|ref|ZP_07723905.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] gi|311101203|gb|EFQ59408.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] Length = 200 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L++RE L + G T++EIAE L LS TV Y+ + KLDA NR +A+ Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAV 190 >gi|302532985|ref|ZP_07285327.1| predicted protein [Streptomyces sp. C] gi|302441880|gb|EFL13696.1| predicted protein [Streptomyces sp. C] Length = 949 Score = 43.5 bits (101), Expect = 0.021, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 34/56 (60%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S A LT E ++L G T++++AE L LS HTV+++L A KLD +R++ Sbjct: 882 SGAWPELTAAEIRVVRLVAQGLTNQQVAEYLSLSPHTVSSHLRRAFTKLDITSRVE 937 >gi|282895907|ref|ZP_06303947.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281199152|gb|EFA74021.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 240 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L DG ++ +IAEKL ++V TV ++ + KL A +R QA +A+R G Sbjct: 179 LTQRELEILELIVDGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 238 Query: 234 I 234 + Sbjct: 239 V 239 >gi|239940280|ref|ZP_04692217.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239986761|ref|ZP_04707425.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291443713|ref|ZP_06583103.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346660|gb|EFE73564.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 214 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 33/59 (55%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G + Sbjct: 155 EREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAV 213 >gi|228477748|ref|ZP_04062377.1| DNA-binding response regulator [Streptococcus salivarius SK126] gi|228250637|gb|EEK09848.1| DNA-binding response regulator [Streptococcus salivarius SK126] Length = 200 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L++RE L + G T++EIAE L LS TV Y+ + KLDA NR +A+ Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAV 190 >gi|251797552|ref|YP_003012283.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. JDR-2] gi|247545178|gb|ACT02197.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. JDR-2] Length = 863 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTE+ET L+L G G +++IA KL L TV YL KL +R QA+A A Sbjct: 801 LTEQETFILRLLGQGAPNKQIAAKLALKEGTVKVYLSRIYAKLGVSSRTQALAAA 855 >gi|134096765|ref|YP_001102426.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005191|ref|ZP_06563164.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909388|emb|CAL99500.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 211 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L+L G+G T+ +IAE+L L+ TV Y+ + KL R QA A R Sbjct: 150 LTERERKVLELIGEGLTNRQIAERLFLAEKTVKNYVTAVLAKLGMERRTQAAAWVAR 206 >gi|327472321|gb|EGF17752.1| DNA-binding response regulator [Streptococcus sanguinis SK408] Length = 199 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KL+A NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEKGWL 199 >gi|239933171|ref|ZP_04690124.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 195 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 25/52 (48%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE S L LA +G EIA +L LS TV Y+ +A K+ A NR+ AI Sbjct: 135 LTTRELSVLSLAAEGAPVAEIAARLHLSRGTVRNYMATAIRKVGARNRVDAI 186 >gi|116628047|ref|YP_820666.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116101324|gb|ABJ66470.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] Length = 200 Score = 43.5 bits (101), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L++RE L + G T++EIAE L LS TV Y+ + KLDA NR +A+ Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAV 190 >gi|330469956|ref|YP_004407699.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328812927|gb|AEB47099.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 218 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERET L+L G + ++IAE+LGLS TV ++ + KL NR++ AI Sbjct: 154 APRLTERETEVLRLVAKGMSYKQIAERLGLSHRTVQNHVQNTLGKLQLHNRVELTRYAIE 213 Query: 231 FG 232 G Sbjct: 214 RG 215 >gi|293553248|ref|ZP_06673885.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1039] gi|291602658|gb|EFF32873.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1039] Length = 210 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%) Query: 155 QVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 +V T +E +R+ LT RE L L +G +++EIA++L +++ TV ++ + Sbjct: 128 EVTTKMMEKMSRRNDPVLHEELTNRENEILMLISEGKSNQEIADELFITLKTVKTHVSNI 187 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA A + G + Sbjct: 188 LAKLEVEDRTQAAIYAFKHGLV 209 >gi|320012105|gb|ADW06955.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 216 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE + L+L G ++ EIA +L + V TV ++ S KL A +R QA+ A G+ Sbjct: 153 LTTREAAVLRLMARGLSNSEIAAELVVGVETVKTHVSSVLAKLGARDRTQAVIAAYESGF 212 Query: 234 IC 235 + Sbjct: 213 VA 214 >gi|271962704|ref|YP_003336900.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505879|gb|ACZ84157.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 336 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%) Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+LA G + E IA +LGLSV TV + A +L A +R QA +A R G++ Sbjct: 282 VLRLAAQGVSDEMIARQLGLSVRTVRSRFADAMAELGAQSRFQAGVEAARRGWLV 336 >gi|229009028|ref|ZP_04166367.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228752198|gb|EEM01887.1| Two-component response regulator [Bacillus mycoides Rock1-4] Length = 201 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L++ +G T+ EI + L L+ TV YL S+ KL+A +R QAI A G+ Sbjct: 141 LTAREVEILRMVKNGMTTGEIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIADEKGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|115376214|ref|ZP_01463456.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|115366787|gb|EAU65780.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 202 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 35/64 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L++RE LQL G ++ E A L LS T+ +L KL+ NR++A+ + IR Sbjct: 138 KPLSDREREILQLIAKGVSNSEAARLLNLSKATIRTHLEHIYRKLEVTNRVEAVTEGIRK 197 Query: 232 GYIC 235 G I Sbjct: 198 GLIS 201 >gi|58613938|gb|AAW79571.1| transcriptional activator [Pseudomonas fluorescens] Length = 234 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + L+ RE +L +G + +E+A +LG++ TV +L +A KLD VNR Q Sbjct: 178 QGLSGREADVARLVANGASDKEVARQLGIAFTTVRTHLNNAMCKLDCVNRTQ 229 >gi|121606516|ref|YP_983845.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595485|gb|ABM38924.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 292 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+L G++S EI +L +S T N ++ + KL+ NR QA++ A G Sbjct: 232 LSEREQQVLKLVASGHSSTEIGARLVISWQTANTHIKNIYRKLNVRNRAQAVSFAANHG 290 >gi|325686801|gb|EGD28826.1| DNA-binding response regulator [Streptococcus sanguinis SK72] Length = 199 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +RN L+++E LQ A G +++EIAEKL LS TV Y+ + KL+A NR +A+ Sbjct: 135 SRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENRTEAVRIGQ 194 Query: 230 RFGYI 234 G++ Sbjct: 195 EKGWL 199 >gi|325067020|ref|ZP_08125693.1| NarL family two-component response regulator [Actinomyces oris K20] Length = 199 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET LQ A DG T E+A ++ LS T +L A K A R A+ A + G+ Sbjct: 137 LTARETEVLQAAADGATVSEVARRVHLSEGTTRNHLSQAMAKTGAPTRAAAVHIAAQKGW 196 Query: 234 I 234 I Sbjct: 197 I 197 >gi|322373180|ref|ZP_08047716.1| DNA-binding response regulator [Streptococcus sp. C150] gi|321278222|gb|EFX55291.1| DNA-binding response regulator [Streptococcus sp. C150] Length = 200 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L++RE L + G T++EIAE L LS TV Y+ + KLDA NR +A+ Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAV 190 >gi|256826588|ref|YP_003150547.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582731|gb|ACU93865.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 261 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Query: 165 KKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + R+SAA +LT+RE L+ G ++EEIA+ L +S TV +L KLDA + Sbjct: 184 RPRTSAAAGGLVDLTDREREILRFVARGMSNEEIADDLVISPATVKTHLARIMGKLDAHD 243 Query: 221 RIQAIAKAIRFGYI 234 R Q + A G + Sbjct: 244 RAQLVVAAYESGLV 257 >gi|296130675|ref|YP_003637925.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022490|gb|ADG75726.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 226 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT RE L+L +G ++ EIA +L +S TV ++G+ KL A +R+QA+ A Sbjct: 161 RGLTPRELDVLRLIAEGASNAEIAAELVVSETTVKTHVGNVFAKLGARDRVQAVIIAYEC 220 Query: 232 GYIC 235 G + Sbjct: 221 GVVT 224 >gi|270308323|ref|YP_003330381.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270154215|gb|ACZ62053.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 232 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 6/80 (7%) Query: 161 LELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +E + ++S+ A LT RE L L GYT EIAEKL +S TV + + Sbjct: 134 IEAYMEKSAEATSLDPYETLTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMR 193 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLD N+ Q + A++ G I Sbjct: 194 KLDLRNQTQLLRYALQRGII 213 >gi|145860182|dbj|BAF57040.1| DNA-binding response regulator [Streptococcus bovis] Length = 214 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 52/104 (50%), Gaps = 2/104 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS + N + A G A + ++ K+ +LT RE L+L Sbjct: 102 KGYMLKTSSAAEILNAIQKVARGELAIETEVDKKIKAHDKQPELHEDLTARERDILRLLA 161 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 162 KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFK 205 >gi|115359785|ref|YP_776923.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285073|gb|ABI90589.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 229 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 9/161 (5%) Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF-AGIAFPVRLGFHKNGYVIFTSE 137 H S L+P+IW + + ++ Q R EG + G++FP V F + Sbjct: 73 HALSSLMPLIWG----DRIFATTEQREFRDEGRIYGLNDGVSFPAHSRHGDVACVSFVRQ 128 Query: 138 FLMLAN---EVIIEAHGA-CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 L + + + GA ++ D + S A L+ RE L+ +G ++ + Sbjct: 129 ARALDDGDMPCDVPSWGALVANLMLDACRRLEAVQSDAPCLSTRELEILKWVAEGKSTWD 188 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I+ + L+ H V ++ S K D R QA+ A RFG + Sbjct: 189 ISRIVSLTEHGVLHHIRSIMKKFDVPTRRQAVLMASRFGLL 229 >gi|16801720|ref|NP_471988.1| hypothetical protein lin2659 [Listeria innocua Clip11262] gi|16804553|ref|NP_466038.1| hypothetical protein lmo2515 [Listeria monocytogenes EGD-e] gi|46908687|ref|YP_015076.1| DNA-binding response regulator DegU [Listeria monocytogenes serotype 4b str. F2365] gi|47093717|ref|ZP_00231469.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b H7858] gi|47096108|ref|ZP_00233709.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 1/2a F6854] gi|217963383|ref|YP_002349061.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|224499869|ref|ZP_03668218.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes Finland 1988] gi|224503244|ref|ZP_03671551.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes FSL R2-561] gi|226225063|ref|YP_002759170.1| two-component response regulator DegU [Listeria monocytogenes Clip81459] gi|254825362|ref|ZP_05230363.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J1-194] gi|254828090|ref|ZP_05232777.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N3-165] gi|254831062|ref|ZP_05235717.1| two-component response regulator DegU [Listeria monocytogenes 10403S] gi|254853956|ref|ZP_05243304.1| DegU [Listeria monocytogenes FSL R2-503] gi|254900347|ref|ZP_05260271.1| two-component response regulator DegU [Listeria monocytogenes J0161] gi|254913414|ref|ZP_05263426.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818] gi|254932243|ref|ZP_05265602.1| DNA-binding response regulator DegU [Listeria monocytogenes HPB2262] gi|254937795|ref|ZP_05269492.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900] gi|254993056|ref|ZP_05275246.1| two-component response regulator DegU [Listeria monocytogenes FSL J2-064] gi|255030722|ref|ZP_05302673.1| two-component response regulator DegU [Listeria monocytogenes LO28] gi|255521855|ref|ZP_05389092.1| two-component response regulator DegU [Listeria monocytogenes FSL J1-175] gi|284802953|ref|YP_003414818.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578] gi|284996094|ref|YP_003417862.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923] gi|290892678|ref|ZP_06555670.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J2-071] gi|300764985|ref|ZP_07074973.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N1-017] gi|16412003|emb|CAD00593.1| lmo2515 [Listeria monocytogenes EGD-e] gi|16415195|emb|CAC97885.1| lin2659 [Listeria innocua Clip11262] gi|46881959|gb|AAT05253.1| DNA-binding response regulator DegU [Listeria monocytogenes serotype 4b str. F2365] gi|47015569|gb|EAL06501.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 1/2a F6854] gi|47017911|gb|EAL08692.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b H7858] gi|50313181|gb|AAT74538.1| DegU [Listeria monocytogenes] gi|217332653|gb|ACK38447.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|225877525|emb|CAS06239.1| Putative two-component response regulator DegU [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258600475|gb|EEW13800.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N3-165] gi|258607345|gb|EEW19953.1| DegU [Listeria monocytogenes FSL R2-503] gi|258610399|gb|EEW23007.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900] gi|284058515|gb|ADB69456.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578] gi|284061561|gb|ADB72500.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923] gi|290557738|gb|EFD91260.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J2-071] gi|293583800|gb|EFF95832.1| DNA-binding response regulator DegU [Listeria monocytogenes HPB2262] gi|293591421|gb|EFF99755.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818] gi|293594605|gb|EFG02366.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J1-194] gi|300514285|gb|EFK41344.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N1-017] gi|307572042|emb|CAR85221.1| DNA-binding response regulator [Listeria monocytogenes L99] gi|313617172|gb|EFR89687.1| transcriptional regulatory protein DegU [Listeria innocua FSL S4-378] gi|313622371|gb|EFR92844.1| transcriptional regulatory protein DegU [Listeria innocua FSL J1-023] gi|328465121|gb|EGF36389.1| hypothetical protein LM1816_15707 [Listeria monocytogenes 1816] gi|328471125|gb|EGF42029.1| hypothetical protein LM220_09715 [Listeria monocytogenes 220] gi|332312945|gb|EGJ26040.1| Transcriptional regulatory protein degU [Listeria monocytogenes str. Scott A] Length = 228 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI+ G+ Sbjct: 165 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGW 224 Query: 234 I 234 + Sbjct: 225 V 225 >gi|324989912|gb|EGC21854.1| DNA-binding response regulator [Streptococcus sanguinis SK353] Length = 199 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +RN L+++E LQ A G +++EIAEKL LS TV Y+ + KL+A NR +A+ Sbjct: 135 SRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENRTEAVRIGQ 194 Query: 230 RFGYI 234 G++ Sbjct: 195 EKGWL 199 >gi|289435776|ref|YP_003465648.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172020|emb|CBH28566.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313631967|gb|EFR99092.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL N1-067] Length = 228 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI+ G+ Sbjct: 165 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGW 224 Query: 234 I 234 + Sbjct: 225 V 225 >gi|270293338|ref|ZP_06199547.1| DNA-binding response regulator VraR [Streptococcus sp. M143] gi|270278187|gb|EFA24035.1| DNA-binding response regulator VraR [Streptococcus sp. M143] Length = 210 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS L + V A G A Q ++ +E + LT RE LQL Sbjct: 98 KGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEELTARERDVLQLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA++L +S+ TV ++ + KL+ +R QA Sbjct: 158 KGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|146307562|ref|YP_001188027.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] gi|145575763|gb|ABP85295.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] Length = 904 Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE + LA G ++EEI ++L L++ TV +L + KL NR QAI +A Sbjct: 842 LTEREREVVCLAAKGLSNEEIGQQLSLALGTVKWHLHNIYEKLKVRNRTQAIRRA 896 >gi|120405951|ref|YP_955780.1| regulatory protein LuxR [Mycobacterium vanbaalenii PYR-1] gi|119958769|gb|ABM15774.1| transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 940 Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ LT +E+ +LAGDG T++EI +L +S HTV+ +L VKL +R Q Sbjct: 878 TSGAQLTAQESQIARLAGDGLTNQEIGAQLFISTHTVDWHLRKVFVKLGITSRRQ 932 >gi|13474964|ref|NP_106527.1| hypothetical protein mll8752 [Mesorhizobium loti MAFF303099] gi|14025713|dbj|BAB52313.1| mll8752 [Mesorhizobium loti MAFF303099] Length = 248 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ RE C+ G +S EI + LG+S +TVN +L +A KLD +R A KA Sbjct: 184 QDLSLREKECILWIARGKSSWEIGKILGISGNTVNFHLKNAMRKLDTASRTVAAIKATSL 243 Query: 232 GYI 234 G + Sbjct: 244 GIV 246 >gi|114561746|ref|YP_749259.1| transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] gi|114333039|gb|ABI70421.1| transcriptional regulator, LuxR family [Shewanella frigidimarina NCIMB 400] Length = 222 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 38/64 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT RE + +QL G ++EIA++L +S HTV A++ S K ++ NR++ + A + Sbjct: 155 QRLTSRERTIIQLVSSGARNKEIAQRLCISEHTVKAHISSIFRKTESRNRVELLRWAQTY 214 Query: 232 GYIC 235 C Sbjct: 215 QSHC 218 >gi|330503565|ref|YP_004380434.1| regulatory protein LuxR [Pseudomonas mendocina NK-01] gi|328917851|gb|AEB58682.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01] Length = 860 Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE + LA G ++EEI ++L L++ TV +L + KL NR QAI +A Sbjct: 798 LTEREREVVCLAAKGMSNEEIGQQLSLALGTVKWHLHNIYEKLKVRNRTQAIRRA 852 >gi|324992362|gb|EGC24283.1| DNA-binding response regulator [Streptococcus sanguinis SK405] Length = 199 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 42/73 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ L+++E LQ A G +++EIAEKL LS TV Y+ + KL+A NR Sbjct: 127 ELMEVLMTSRNPLSQQERLVLQAAATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENR 186 Query: 222 IQAIAKAIRFGYI 234 +A+ G++ Sbjct: 187 TEAVRIGQEQGWL 199 >gi|317125008|ref|YP_004099120.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589096|gb|ADU48393.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 228 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 6/98 (6%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKR--SSAA---RNLTERETSCLQLAGDGYTSEEI 194 ++ NE I + G +++ + + K R S AA +++T RE L+L +G +++EI Sbjct: 121 VMRNETPI-SPGVAGRLLREIRQAGKPRVTSPAATTEQSVTRRELEILRLVAEGLSNKEI 179 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 A++L ++ TV ++ +A KL NRIQA A IR G Sbjct: 180 AKRLVITEGTVKNHVHNALEKLHMDNRIQAAAYVIRQG 217 >gi|300791111|ref|YP_003771402.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800625|gb|ADJ51000.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 222 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L+L G T+ +IAE+L LS TV ++ S KL NR++ AI G Sbjct: 159 RLTERETDVLRLVAKGLTARQIAERLVLSHRTVENHVQSTLRKLQLHNRVELARYAIEHG 218 >gi|238060903|ref|ZP_04605612.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237882714|gb|EEP71542.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 223 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 38/66 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + A LT+RET L+L G + ++IAE+LGLS TV ++ + KL NR++ Sbjct: 155 RDTDAPRLTDRETEVLRLVAKGMSYKQIAERLGLSHRTVQNHVQNTLGKLQLHNRVELTR 214 Query: 227 KAIRFG 232 AI G Sbjct: 215 YAIERG 220 >gi|254390047|ref|ZP_05005268.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197703755|gb|EDY49567.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 723 Score = 43.5 bits (101), Expect = 0.022, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L+L G + IAE+LG+ V TV ++ S KL +R QA+ A G Sbjct: 655 LTPRETEVLRLIATGLDNTGIAEELGIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGL 714 Query: 234 I 234 + Sbjct: 715 V 715 >gi|197103145|ref|YP_002128523.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum HLK1] gi|196480421|gb|ACG79948.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum HLK1] Length = 252 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ R+ CL+ A +G +S I + L LS TV+ +L SA KL R+QA+A+A Sbjct: 186 KLSARQIECLRWAREGKSSYVIGQILSLSARTVDEHLASACRKLGVHTRMQAVAQA 241 >gi|134101943|ref|YP_001107604.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914566|emb|CAM04679.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 156 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L DG + EEIA+KL S T+ L +L NR A+A AIR G Sbjct: 95 GLTSREVDVLHGVADGLSLEEIAQKLAYSERTIKNILYQFMKRLGLRNRAHAVAYAIRLG 154 Query: 233 YI 234 I Sbjct: 155 II 156 >gi|88854878|ref|ZP_01129544.1| luxR family two component system response regulator [marine actinobacterium PHSC20C1] gi|88816039|gb|EAR25895.1| luxR family two component system response regulator [marine actinobacterium PHSC20C1] Length = 214 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ + + +EIA+ L L+ TV YL SA KLDA +R A KA + G+ Sbjct: 154 LTDRELDALRFSRSTMSVQEIADTLHLAPGTVRNYLSSAMTKLDAHSRHDAADKAWQQGW 213 Query: 234 I 234 I Sbjct: 214 I 214 >gi|126172600|ref|YP_001048749.1| two component LuxR family transcriptional regulator [Shewanella baltica OS155] gi|152998897|ref|YP_001364578.1| two component LuxR family transcriptional regulator [Shewanella baltica OS185] gi|125995805|gb|ABN59880.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS155] gi|151363515|gb|ABS06515.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS185] Length = 198 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L ++E L+LA +G ++ +IAE L ++ TV YL A KL+A NRI A A + G+ Sbjct: 138 LNDKERRALRLASEGKSTADIAETLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGW 197 Query: 234 I 234 + Sbjct: 198 L 198 >gi|319650145|ref|ZP_08004294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317398326|gb|EFV79015.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 212 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 4/91 (4%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E +IE+ A ++++ F E KK +LTERE L G+G T++EI+E+L + + Sbjct: 122 ESVIESKVAG-KMVSRFREKEKKPHD---DLTEREFDVLLCIGEGMTNQEISEELFIGIK 177 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ + KL +R QA A R G I Sbjct: 178 TVKTHVSNILSKLGVTDRTQAAVYANRNGII 208 >gi|313636331|gb|EFS02121.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL S4-171] Length = 228 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI+ G+ Sbjct: 165 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGW 224 Query: 234 I 234 + Sbjct: 225 V 225 >gi|293364822|ref|ZP_06611539.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307703071|ref|ZP_07640018.1| response regulator [Streptococcus oralis ATCC 35037] gi|291316272|gb|EFE56708.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307623464|gb|EFO02454.1| response regulator [Streptococcus oralis ATCC 35037] Length = 210 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 2/98 (2%) Query: 129 NGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS + L+ A + A Q ++ +E + LT RE LQL Sbjct: 98 KGYMLKTSSADELLHALRKVAAGELAIEQEVSKKVEYHRNHMELHEELTARERDVLQLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA++L +S+ TV ++ + KL+ +R QA Sbjct: 158 KGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQA 195 >gi|228997588|ref|ZP_04157200.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|228762140|gb|EEM11074.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 201 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L++ +G T+ EI + L L+ TV YL S+ KL+A +R QAI A G+ Sbjct: 141 LTAREVEILRMVKNGMTTGEIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIADEKGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|315304744|ref|ZP_07874927.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL F6-596] gi|313626888|gb|EFR95838.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL F6-596] Length = 228 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI+ G+ Sbjct: 165 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGW 224 Query: 234 I 234 + Sbjct: 225 V 225 >gi|311899603|dbj|BAJ32011.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 238 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA +G+ +EEIA L L+ TV ++ KL A +R QA+A A R G Sbjct: 165 LTVREREVLRLAAEGHPNEEIAALLHLAESTVKTHVKRILGKLGARDRSQAVAAAYRHGL 224 Query: 234 I 234 + Sbjct: 225 M 225 >gi|297161023|gb|ADI10735.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 201 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L A DG T +IA K+ LS TV YL SA K NR++A+ A + G+ Sbjct: 141 LTPRERDVLTAAVDGATVADIAAKVHLSPATVRNYLSSAIGKTQTRNRMEAVRAARQNGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|172039633|ref|YP_001806134.1| LuxR family transcriptional regulator [Cyanothece sp. ATCC 51142] gi|171701087|gb|ACB54068.1| transcriptional Regulator, LuxR family [Cyanothece sp. ATCC 51142] Length = 90 Score = 43.5 bits (101), Expect = 0.022, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G T+ EIA+KL +S TV+ ++ + K NR++ + A+++G Sbjct: 12 LSGREMQILDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTENRVELVRWALQWGK 71 Query: 234 IC 235 +C Sbjct: 72 VC 73 >gi|327450891|gb|EGE97545.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|328754312|gb|EGF67928.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] Length = 237 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A Sbjct: 145 SKAEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALV 204 Query: 229 IRFG 232 +R G Sbjct: 205 LRVG 208 >gi|304385722|ref|ZP_07368066.1| DNA-binding response regulator [Pediococcus acidilactici DSM 20284] gi|304328226|gb|EFL95448.1| DNA-binding response regulator [Pediococcus acidilactici DSM 20284] Length = 201 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 36/58 (62%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S+ LT+RET L++A G ++EIA++L LS T+ YL + KL NR++A+ Sbjct: 135 STEQSPLTKRETEVLKVAASGMPTKEIAQQLFLSEGTIRNYLSAIFSKLGVRNRLEAV 192 >gi|228986249|ref|ZP_04146388.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773448|gb|EEM21875.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 187 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT E LQL DGY +EIA L S T++ ++ KL+ + ++A+ K I+ GY Sbjct: 122 LTHSEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKLGY 181 Query: 234 I 234 I Sbjct: 182 I 182 >gi|297560440|ref|YP_003679414.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844888|gb|ADH66908.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 234 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 11/117 (9%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR----NLTER 177 +G+++ + L + V + A GA +++ F L S A LT R Sbjct: 104 SGFLLKDAPPAELVSAVEVVADGAAAISPAVLNRLLDRFAPLLPSASPATEPAEDTLTAR 163 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L G+++ EIA L L TV +++GS KL+ +R+QA+ A G + Sbjct: 164 EHEVLRLLARGWSNAEIAAHLVLGETTVKSHVGSILTKLELRDRVQAVVYAYEHGLV 220 >gi|217971562|ref|YP_002356313.1| LuxR family two component transcriptional regulator [Shewanella baltica OS223] gi|217496697|gb|ACK44890.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS223] Length = 198 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L ++E L+LA +G ++ +IAE L ++ TV YL A KL+A NRI A A + G+ Sbjct: 138 LNDKERRALRLASEGKSTADIAETLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGW 197 Query: 234 I 234 + Sbjct: 198 L 198 >gi|320333847|ref|YP_004170558.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755136|gb|ADV66893.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 215 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%) Query: 152 ACYQVITDFLELFKKRSSA-----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 A Q + LE F+ + A LT+RE L+L GY++ EIA L + TV Sbjct: 128 AVTQRVLRGLEAFRPAAEPFTPCDAVTLTDRECDVLRLLAGGYSNREIAGALRTTEGTVK 187 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +Y+ + KL +R +A+ KA+ G + Sbjct: 188 SYVSNVLSKLGVRDRTRAVLKALELGVL 215 >gi|298245015|ref|ZP_06968821.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552496|gb|EFH86361.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 931 Score = 43.5 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 34/54 (62%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 T RE L+L G T+++IA +L +S+ T ++ S KL A NR+QA+A+A Sbjct: 872 TRREEEVLRLLAQGATNQDIARQLVVSLGTAKKHVASILSKLGAENRLQAVARA 925 >gi|260906853|ref|ZP_05915175.1| two component transcriptional regulator, LuxR family protein [Brevibacterium linens BL2] Length = 209 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 7/81 (8%) Query: 161 LELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 L+L +R+ R L+ERE +L G T++EI +L +S+ TV ++LGS Sbjct: 125 LDLLSRRAQDTRTGEDRLAGLSERENDVARLVARGRTNQEICAELYISLGTVKSHLGSIQ 184 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 +L A NR++ A+ G + Sbjct: 185 TRLGARNRVEIAARMWESGAM 205 >gi|225377710|ref|ZP_03754931.1| hypothetical protein ROSEINA2194_03361 [Roseburia inulinivorans DSM 16841] gi|225210459|gb|EEG92813.1| hypothetical protein ROSEINA2194_03361 [Roseburia inulinivorans DSM 16841] Length = 186 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F + LT+ E +QL +G ++IA L +S T++ +L KLD + ++ Sbjct: 112 FDREIPFIEGLTDSEKQIIQLIAEGQKRKDIASTLYISERTLSNHLQHIFEKLDVTSAVE 171 Query: 224 AIAKAIRFGYI 234 A+ KAI+ GYI Sbjct: 172 AVTKAIQLGYI 182 >gi|310824729|ref|YP_003957087.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|309397801|gb|ADO75260.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 200 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+ G ++++IA++L ++ TV A++ KL +R QA+ +A+R G Sbjct: 137 LTERERQTLEAMARGRSNKQIAQELSITEATVKAHVTQILSKLGVDDRTQAVTRALRRGL 196 Query: 234 I 234 I Sbjct: 197 I 197 >gi|307710890|ref|ZP_07647317.1| transcriptional regulatory protein degU [Streptococcus mitis SK321] gi|307617335|gb|EFN96508.1| transcriptional regulatory protein degU [Streptococcus mitis SK321] Length = 199 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G++++EIA+KL LS TV Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|289678344|ref|ZP_06499234.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5] Length = 213 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 152 LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGL 211 Query: 234 I 234 + Sbjct: 212 L 212 >gi|239927379|ref|ZP_04684332.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291435723|ref|ZP_06575113.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291338618|gb|EFE65574.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 222 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I ++L+ + A L T RE L+L +G++S+EIAE L +SV TV + Sbjct: 136 GAVTALIRNYLDRVRDGEEAPEQLLTPREEEVLKLVAEGHSSKEIAELLFISVKTVQRHR 195 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R+ AIR G + Sbjct: 196 ENLLHKLGLRDRLDLTRYAIRAGLV 220 >gi|254471852|ref|ZP_05085253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp. JE062] gi|211959054|gb|EEA94253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp. JE062] Length = 254 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 6/84 (7%) Query: 154 YQVITDFLELFKKRSSAARNLTE------RETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 Y V+ + LF + L+E RE CL G ++EIA L LS TV Sbjct: 166 YPVLKGAVHLFHTYAQEPETLSEFFGFTPREHECLLWLTAGRANKEIAHILNLSEKTVEH 225 Query: 208 YLGSATVKLDAVNRIQAIAKAIRF 231 ++ A KL NR A+A+A+ F Sbjct: 226 HIKRACKKLRVTNRTHAVARAMTF 249 >gi|126347864|emb|CAJ89584.1| putative two component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 224 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 34/64 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LTERET L L G ++ EIA+ L L+ TV ++ KLD +R QA+ A Sbjct: 158 KGLTERETEVLTLVARGQSNTEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYES 217 Query: 232 GYIC 235 G + Sbjct: 218 GLVT 221 >gi|116873879|ref|YP_850660.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742757|emb|CAK21881.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 228 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI+ G+ Sbjct: 165 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGW 224 Query: 234 I 234 + Sbjct: 225 V 225 >gi|115524334|ref|YP_781245.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115518281|gb|ABJ06265.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 246 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 34/68 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + A LT RE L G ++ EI E L ++ T +L +A KL AVN+ Sbjct: 173 LVSPANDAPPRLTHRECETLNWTAQGKSAWEIGEILQIAQRTAEEHLATAARKLGAVNKT 232 Query: 223 QAIAKAIR 230 A+A AIR Sbjct: 233 HAVAIAIR 240 >gi|326793450|ref|YP_004311270.1| LuxR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326544214|gb|ADZ89434.1| two component transcriptional regulator, LuxR family [Marinomonas mediterranea MMB-1] Length = 306 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NLT+RE+ L+ +G T+ EIAE L +S TVN +L KL NR A A+R Sbjct: 244 NLTDRESEVLRWIANGKTNREIAEILEMSPRTVNKHLEQIFPKLGVENRTAAAGVALRV 302 >gi|289641921|ref|ZP_06474076.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508221|gb|EFD29165.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 371 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/54 (46%), Positives = 33/54 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE L L G +++EIAE+L ++V TV ++ KL AVNR QAIA Sbjct: 310 ELTAREREVLALIAGGASNQEIAEQLVITVGTVKTHVKHILAKLGAVNRSQAIA 363 >gi|297579999|ref|ZP_06941926.1| transcriptional regulator [Vibrio cholerae RC385] gi|297535645|gb|EFH74479.1| transcriptional regulator [Vibrio cholerae RC385] gi|327485927|gb|AEA80333.1| Transcriptional regulator VpsT [Vibrio cholerae LMA3894-4] Length = 224 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 37/55 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE ++L G G ++ EIA+KL +S +TV +L + K++A NR+QA+ A Sbjct: 159 LTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 213 >gi|113953858|ref|YP_731807.1| LuxR family transcriptional regulator [Synechococcus sp. CC9311] gi|113881209|gb|ABI46167.1| transcriptional regulator, LuxR family protein [Synechococcus sp. CC9311] Length = 83 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE ++L +G T++EIAE+L +S TV+ ++ + K + NR+ + A+ G Sbjct: 5 LSSREIEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMDHGK 64 Query: 234 IC 235 IC Sbjct: 65 IC 66 >gi|29832411|ref|NP_827045.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609530|dbj|BAC73580.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 210 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ + DG T +IA KL LS TV YL SA K NR++A+ +A + G+ Sbjct: 150 LTARECDVLKASVDGATVADIAAKLRLSESTVRNYLSSAIGKTGTRNRMEAMREARQQGW 209 Query: 234 I 234 + Sbjct: 210 L 210 >gi|330899624|gb|EGH31043.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 642 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 581 LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGL 640 Query: 234 I 234 + Sbjct: 641 L 641 >gi|269836626|ref|YP_003318854.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785889|gb|ACZ38032.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 1034 Score = 43.5 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + D LE + ++ L+ RE L+L +G T E+AE+L +S TV +L S KL Sbjct: 958 VIDHLE--PRPTAVPGGLSAREIEVLRLVAEGLTDAEVAERLSISPRTVGGHLQSIYNKL 1015 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R A + A +FG + Sbjct: 1016 GISSRTAATSFAHKFGLV 1033 >gi|269125106|ref|YP_003298476.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310064|gb|ACY96438.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 954 Score = 43.5 bits (101), Expect = 0.023, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 3/67 (4%) Query: 169 SAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 SAAR+ LT RE L+L G T+ EIAE L +S TV+ ++ + KL R +A Sbjct: 885 SAARSPYGLTPRELEVLRLVAQGRTNREIAEVLFISAKTVSVHVSNILAKLQVPTRGEAA 944 Query: 226 AKAIRFG 232 A A R G Sbjct: 945 ATAHRLG 951 >gi|254386960|ref|ZP_05002242.1| two-component regulator [Streptomyces sp. Mg1] gi|194345787|gb|EDX26753.1| two-component regulator [Streptomyces sp. Mg1] Length = 220 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 AR +TERE L+L +G+TS+EI + L +S TV + + KL +R++ AIR Sbjct: 155 ARPITEREEEILKLVAEGHTSKEIGDFLVISAKTVERHRANLLQKLGLRDRLELTRYAIR 214 Query: 231 FGYI 234 G I Sbjct: 215 VGLI 218 >gi|171060622|ref|YP_001792971.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170778067|gb|ACB36206.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 222 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G+T EI +LGLS HT+ Y+ KL+ +R +A +A R G Sbjct: 159 QLTEREREVLLRVAKGFTLPEIGVQLGLSRHTIADYVKQIYRKLNVSSRAEAALEAQRLG 218 >gi|149004513|ref|ZP_01829227.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147757571|gb|EDK64593.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] Length = 189 Score = 43.5 bits (101), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G++++EIA+KL LS TV Y+ + KLDA NR +A A G+ Sbjct: 129 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGW 188 Query: 234 I 234 + Sbjct: 189 L 189 >gi|326771790|ref|ZP_08231075.1| two-component system response regulator TcsR2 [Actinomyces viscosus C505] gi|326637923|gb|EGE38824.1| two-component system response regulator TcsR2 [Actinomyces viscosus C505] Length = 203 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET LQ A DG T E+A ++ LS T +L A K A R A+ A + G+ Sbjct: 141 LTARETEVLQAAADGATVSEVARRVHLSEGTTRNHLSQAMAKTGAPTRAAAVHIAAQKGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|290960962|ref|YP_003492144.1| response regulator [Streptomyces scabiei 87.22] gi|260650488|emb|CBG73604.1| putative response regulator [Streptomyces scabiei 87.22] Length = 225 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + LA +G +++EIAEKL +S TV ++ A KL A +R Q + A + G Sbjct: 158 TLTSREREVMSLAAEGSSNDEIAEKLYVSPLTVRTHVHRAMTKLGARDRAQLVVMAYQSG 217 Query: 233 YI 234 + Sbjct: 218 LV 219 >gi|212640416|ref|YP_002316936.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212561896|gb|ACJ34951.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 260 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG +++ IA+ L +S TV ++ + KL+ +R QA+ AI+ G+ Sbjct: 197 LTRRECEVLQLLADGKSNKGIADALYISEKTVKNHVSNILQKLNVNDRTQAVVVAIKNGW 256 Query: 234 I 234 + Sbjct: 257 V 257 >gi|254447404|ref|ZP_05060870.1| two-component system regulatory protein [gamma proteobacterium HTCC5015] gi|198262747|gb|EDY87026.1| two-component system regulatory protein [gamma proteobacterium HTCC5015] Length = 213 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 38/63 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LT RE + ++L +G +++EIA +L L + TV Y+ S +KL +R QA+ K Sbjct: 150 AYDLTAREVNIIELMSEGASNKEIAFRLDLKMGTVKNYVSSVLLKLGVRDRTQAVIKIKE 209 Query: 231 FGY 233 G+ Sbjct: 210 EGW 212 >gi|187250721|ref|YP_001875203.1| two component LuxR family transcriptional regulator [Elusimicrobium minutum Pei191] gi|186970881|gb|ACC97866.1| Two-component transcriptional regulator, LuxR family [Elusimicrobium minutum Pei191] Length = 215 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 4/84 (4%) Query: 153 CYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 C +V ++ F ++S ++ LT +E LQL +G++S+EIA++ GLS++TV+ + Sbjct: 128 CSKVSKFVVQGFLGKASPSKKDPSGLTPKEKQILQLIAEGFSSKEIAKEFGLSLNTVHVH 187 Query: 209 LGSATVKLDAVNRIQAIAKAIRFG 232 + KLD + + + AI+ G Sbjct: 188 RNNIMRKLDIHKQAELVRYAIKEG 211 >gi|148242532|ref|YP_001227689.1| two component system response regulator [Synechococcus sp. RCC307] gi|147850842|emb|CAK28336.1| Possible two component system response regulator [Synechococcus sp. RCC307] Length = 235 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQ +GY + EIA++L +S TV ++ + KL +R QA A+R G Sbjct: 171 QLSSREQEVLQALSEGYCNREIAQRLFISQETVKTHVSTVISKLGVRDRTQAAVMALRMG 230 Query: 233 YI 234 + Sbjct: 231 LL 232 >gi|323154780|gb|EFZ40977.1| bacterial regulatory s, luxR family protein [Escherichia coli EPECa14] Length = 123 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R S+ LT E+ LQL DG T++EIA L LS TV + + KLD + Sbjct: 49 EKISSRYSSDNQLTNSESEILQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSG 108 Query: 222 IQAIAKAIRFGYIC 235 I+ I A+R G +C Sbjct: 109 IELIKTALRMG-VC 121 >gi|302554590|ref|ZP_07306932.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472208|gb|EFL35301.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 217 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA ++ +LE L R +TERE L+L +G+TS+EI E L +S TV + Sbjct: 131 GAERALVRSYLERLHAGGGLPERPITEREEEILKLVAEGHTSKEIGELLFISAKTVERHR 190 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G I Sbjct: 191 ANLLQKLGMRDRLELTRYAIRAGLI 215 >gi|256423291|ref|YP_003123944.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038199|gb|ACU61743.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 218 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T++E LQLA T ++IA K+ LS T++ Y S +KL+ +R+ + +AIR Y Sbjct: 156 VTDKEKDFLQLACSDLTYKQIAAKMKLSERTIDGYRESLFMKLNVQSRVGMVMEAIRKNY 215 Query: 234 IC 235 I Sbjct: 216 IA 217 >gi|163846245|ref|YP_001634289.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524000|ref|YP_002568470.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667534|gb|ABY33900.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222447879|gb|ACM52145.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 217 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + S A LTERE L G+++ EIA++L +S TV Y+ S KL +R QAI Sbjct: 148 RPSPLAEPLTEREMDVLHGIAAGHSNREIADQLCISEGTVKNYVSSLLAKLAVRDRTQAI 207 Query: 226 AKAIRFGYI 234 +A G + Sbjct: 208 IRARELGLL 216 >gi|300866500|ref|ZP_07111190.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300335457|emb|CBN56350.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 241 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L GY++ IAEKL ++V TV ++ + KL A +R QA A+R G Sbjct: 180 LTERELEVLELIVQGYSNAAIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVLALRSGL 239 Query: 234 I 234 + Sbjct: 240 V 240 >gi|254385617|ref|ZP_05000941.1| response regulator [Streptomyces sp. Mg1] gi|194344486|gb|EDX25452.1| response regulator [Streptomyces sp. Mg1] Length = 210 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 49/106 (46%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GY++ S L N V A G + +LF+ R A L+ERE LQL G Sbjct: 105 GYLLKGSSREELVNAVKAAARGETVLTPSLAPKLFRARVVEAPVLSERECEVLQLVRQGL 164 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 T+ +I +L +S TV +L + KL +R A+ A+ G + Sbjct: 165 TNADIGRRLFISEATVKTHLLRSFKKLSVSDRTAAVITALERGLLS 210 >gi|160873477|ref|YP_001552793.1| two component LuxR family transcriptional regulator [Shewanella baltica OS195] gi|304411702|ref|ZP_07393314.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307306246|ref|ZP_07585991.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|160858999|gb|ABX47533.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|304349890|gb|EFM14296.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306911119|gb|EFN41546.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|315265706|gb|ADT92559.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 198 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L ++E L+LA +G ++ +IAE L ++ TV YL A KL+A NRI A A + G+ Sbjct: 138 LNDKERRALRLASEGKSTADIAETLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGW 197 Query: 234 I 234 + Sbjct: 198 L 198 >gi|21225909|ref|NP_631688.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289766932|ref|ZP_06526310.1| two-component system response regulator [Streptomyces lividans TK24] gi|11323234|emb|CAC16981.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289697131|gb|EFD64560.1| two-component system response regulator [Streptomyces lividans TK24] Length = 221 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE + DG + EIAE+L ++V TV A+ GS KL NR+Q Sbjct: 148 LTEREWETARAVADGLGNPEIAERLHITVATVKAHTGSLFAKLGVENRVQ 197 >gi|239941886|ref|ZP_04693823.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291445336|ref|ZP_06584726.1| response regulator [Streptomyces roseosporus NRRL 15998] gi|291348283|gb|EFE75187.1| response regulator [Streptomyces roseosporus NRRL 15998] Length = 234 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA--IAKA 228 AR LT RE L+L G ++EEI +L LS TV ++ S KL A NR+QA IA Sbjct: 152 ARLLTAREREVLELLPSGMSNEEIGRRLFLSRTTVRDHVSSLLAKLGAANRVQAAVIASG 211 Query: 229 IR 230 +R Sbjct: 212 MR 213 >gi|229173813|ref|ZP_04301353.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228609663|gb|EEK66945.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 186 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F + LT E LQL DGY +EIA L S T++ ++ KL+ + ++ Sbjct: 112 FPTSTETIEELTHTEKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLE 171 Query: 224 AIAKAIRFGYI 234 A+ I+ GYI Sbjct: 172 AVTNGIKLGYI 182 >gi|183983931|ref|YP_001852222.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] gi|183177257|gb|ACC42367.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] Length = 218 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 17/117 (14%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGAC-------------YQVITDFLELFKKRSSAARNLT 175 GY++ ++ LA+ V A G Y+ I + + R S LT Sbjct: 103 TGYLVKSASKAELADAVRATAAGRAVFTPSLAGLVLGEYRRIAQTADSSQDRPS----LT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ERET L+ G ++++IAEKL LS TV ++ + KL NR++ AI G Sbjct: 159 ERETEILRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELTRYAIEHG 215 >gi|33239629|ref|NP_874571.1| transcriptional regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237154|gb|AAP99223.1| Transcriptional regulator, contains HTH motif [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 93 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S +L+ RE ++L G T++EIA+KL +S TV+ ++ + K + NR+ + Sbjct: 8 NSVQMSLSAREMEIIELVASGLTNQEIAQKLTISKRTVDNHVSNMFTKTGSKNRVALLNW 67 Query: 228 AIRFGYIC 235 A+ G IC Sbjct: 68 AMDHGKIC 75 >gi|308445190|gb|ADO32764.1| putative two-component response regulator [Streptomyces vietnamensis] Length = 202 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G + EIA + LS TV YL S KL+A NR+ A+ A G+ Sbjct: 141 LTKRELEVLRLTAAGDEAPEIAARPHLSTGTVRNYLTSVVTKLNARNRVDAVRIAHESGW 200 Query: 234 IC 235 + Sbjct: 201 LV 202 >gi|290954729|ref|YP_003485911.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260644255|emb|CBG67336.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 34/64 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LTERET L L G ++ EIA+ L L+ TV ++ KLD +R QA+ A Sbjct: 158 KRLTERETEVLTLVARGQSNGEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYES 217 Query: 232 GYIC 235 G + Sbjct: 218 GLVA 221 >gi|218515607|ref|ZP_03512447.1| transcriptional activator protein [Rhizobium etli 8C-3] Length = 94 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE CL++ +G +++I +L +SV V YL SA KL +A+A+A Sbjct: 33 RLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALE 92 Query: 233 YI 234 I Sbjct: 93 LI 94 >gi|126348513|emb|CAJ90237.1| putative two-component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 220 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + S+ AR LTERE L+L G ++ EIA +L + TV +++ + KL A +R QA Sbjct: 149 RAESTRAR-LTEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQA 207 Query: 225 IAKAIRFGYIC 235 + A G++ Sbjct: 208 VITAYESGFVA 218 >gi|47176976|ref|YP_015587.1| transcriptional activation protein [Oligotropha carboxidovorans OM5] gi|47115378|emb|CAG28434.1| transcriptional-activation protein RaiR [Oligotropha carboxidovorans OM5] Length = 166 Score = 43.5 bits (101), Expect = 0.024, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RET CLQ+ +G + IA L LS V YL A +L+ +QA KA G Sbjct: 103 LSRRETQCLQMLAEGIAPKNIAATLRLSEAAVRLYLQRARKRLNCATTLQAAVKASTLGL 162 Query: 234 I 234 I Sbjct: 163 I 163 >gi|288563091|pdb|3KLN|A Chain A, Vibrio Cholerae Vpst gi|288563092|pdb|3KLN|B Chain B, Vibrio Cholerae Vpst gi|288563093|pdb|3KLN|C Chain C, Vibrio Cholerae Vpst gi|288563094|pdb|3KLN|D Chain D, Vibrio Cholerae Vpst gi|288563095|pdb|3KLO|A Chain A, Vibrio Cholerae Vpst Bound To C-Di-Gmp gi|288563096|pdb|3KLO|B Chain B, Vibrio Cholerae Vpst Bound To C-Di-Gmp gi|288563097|pdb|3KLO|C Chain C, Vibrio Cholerae Vpst Bound To C-Di-Gmp gi|288563098|pdb|3KLO|D Chain D, Vibrio Cholerae Vpst Bound To C-Di-Gmp Length = 225 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 37/55 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE ++L G G ++ EIA+KL +S +TV +L + K++A NR+QA+ A Sbjct: 160 LTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 214 >gi|255039009|ref|YP_003089630.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254951765|gb|ACT96465.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 267 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L + G G S+EI+ L +SVHTVN + KL A N I+A+ A G Sbjct: 206 LTSREKEILGMIGKGKLSKEISALLDISVHTVNTHRQRILEKLHADNSIEALQSAKMIGL 265 Query: 234 IC 235 + Sbjct: 266 LA 267 >gi|189219523|ref|YP_001940164.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Methylacidiphilum infernorum V4] gi|189186381|gb|ACD83566.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Methylacidiphilum infernorum V4] Length = 243 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/43 (53%), Positives = 27/43 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L++RE QL G GY S +IAE+L LSV TV AY S KL Sbjct: 169 LSDREFEVFQLIGKGYGSRQIAEQLSLSVKTVEAYRASIKQKL 211 >gi|15601705|ref|NP_233336.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121586693|ref|ZP_01676477.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121726414|ref|ZP_01679688.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|147672305|ref|YP_001215128.1| LuxR family transcriptional regulator [Vibrio cholerae O395] gi|153212168|ref|ZP_01947963.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|153801409|ref|ZP_01955995.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|153818303|ref|ZP_01970970.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|153821011|ref|ZP_01973678.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|153824729|ref|ZP_01977396.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|153827751|ref|ZP_01980418.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|227812518|ref|YP_002812528.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|254224744|ref|ZP_04918360.1| transcriptional regulator, LuxR family [Vibrio cholerae V51] gi|254850118|ref|ZP_05239468.1| transcriptional regulator [Vibrio cholerae MO10] gi|255746307|ref|ZP_05420254.1| transcriptional regulator VpsT [Vibrio cholera CIRS 101] gi|262158188|ref|ZP_06029306.1| transcriptional regulator VpsT [Vibrio cholerae INDRE 91/1] gi|262169213|ref|ZP_06036906.1| transcriptional regulator VpsT [Vibrio cholerae RC27] gi|262191930|ref|ZP_06050097.1| transcriptional regulator VpsT [Vibrio cholerae CT 5369-93] gi|9658390|gb|AAF96848.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549121|gb|EAX59156.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121631162|gb|EAX63537.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|124116720|gb|EAY35540.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|124123075|gb|EAY41818.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|125622807|gb|EAZ51125.1| transcriptional regulator, LuxR family [Vibrio cholerae V51] gi|126511116|gb|EAZ73710.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|126521385|gb|EAZ78608.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|146314688|gb|ABQ19228.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|148876596|gb|EDL74731.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|149741685|gb|EDM55714.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|227011660|gb|ACP07871.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|227015599|gb|ACP11808.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|254845823|gb|EET24237.1| transcriptional regulator [Vibrio cholerae MO10] gi|255736061|gb|EET91459.1| transcriptional regulator VpsT [Vibrio cholera CIRS 101] gi|262022494|gb|EEY41202.1| transcriptional regulator VpsT [Vibrio cholerae RC27] gi|262030066|gb|EEY48712.1| transcriptional regulator VpsT [Vibrio cholerae INDRE 91/1] gi|262032164|gb|EEY50735.1| transcriptional regulator VpsT [Vibrio cholerae CT 5369-93] Length = 224 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 37/55 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE ++L G G ++ EIA+KL +S +TV +L + K++A NR+QA+ A Sbjct: 159 LTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 213 >gi|29830210|ref|NP_824844.1| erythropoiesis-stimulating protein [Streptomyces avermitilis MA-4680] gi|15824087|dbj|BAB69254.1| erythropoiesis-stimulating protein homolog [Streptomyces avermitilis] gi|29607321|dbj|BAC71379.1| putative erythropoiesis-stimulating protein [Streptomyces avermitilis MA-4680] Length = 337 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 37/71 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R LT +E + L+L G+G T E +A KLG+SV T +L A +R QA Sbjct: 262 QPRDRGEEELTGQEQAVLRLLGEGLTDEVVARKLGVSVRTGRRITAELMGRLGARSRFQA 321 Query: 225 IAKAIRFGYIC 235 +A + G++ Sbjct: 322 GLRAAQLGWLT 332 >gi|15901823|ref|NP_346427.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|111656996|ref|ZP_01407802.1| hypothetical protein SpneT_02001776 [Streptococcus pneumoniae TIGR4] gi|148995258|ref|ZP_01824066.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|168490006|ref|ZP_02714205.1| DNA-binding response regulator [Streptococcus pneumoniae SP195] gi|5830548|emb|CAB54585.1| response regulator [Streptococcus pneumoniae] gi|14973509|gb|AAK76067.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|147926803|gb|EDK77860.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|183571627|gb|EDT92155.1| DNA-binding response regulator [Streptococcus pneumoniae SP195] gi|332072085|gb|EGI82572.1| response regulator [Streptococcus pneumoniae GA17570] Length = 199 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G++++EIA+KL LS TV Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|163846970|ref|YP_001635014.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524791|ref|YP_002569262.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668259|gb|ABY34625.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448670|gb|ACM52936.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 218 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 30/51 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L+L GYT++EI E+L LSV TV +L KL +R QA Sbjct: 159 LTPRERDILRLLAQGYTNQEIGEQLALSVGTVKNHLSVIFAKLAVRDRTQA 209 >gi|294677360|ref|YP_003577975.1| LuxR family autoinducer-binding transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294476180|gb|ADE85568.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacter capsulatus SB 1003] Length = 250 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Query: 144 EVIIEAHGACYQVITDFLELFKKR---SSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + I E HG +V+ + L S+ R LT R+ L+ GDG TS +IA+ LG Sbjct: 151 DAIWEEHGRDLRVLNSIMHLKISALPFSTTRRPLTSRQREVLEWVGDGKTSADIAQILGP 210 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + TV +L A L+ QA+ KA Sbjct: 211 TTATVEKHLRLAREALEVETTAQALLKA 238 >gi|302540802|ref|ZP_07293144.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces hygroscopicus ATCC 53653] gi|302458420|gb|EFL21513.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces himastatinicus ATCC 53653] Length = 221 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G ++I +F K+ + A+ LTERE + L G G ++EEIA +L +S T + Sbjct: 130 GVTRRLIAEFAARSKEPAPASVLAELTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + VKL A +R Q + A G + Sbjct: 190 VSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|240171004|ref|ZP_04749663.1| two-component transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 218 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERET L+ G ++++IAEKL LS TV ++ + KL NR++ AI G Sbjct: 156 SLTERETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELTRYAIEHG 215 >gi|229029217|ref|ZP_04185310.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271] gi|228732125|gb|EEL83014.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271] Length = 204 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 40/66 (60%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 134 KKEQPLHEDLTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 193 Query: 225 IAKAIR 230 + A R Sbjct: 194 VIYAFR 199 >gi|153006395|ref|YP_001380720.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] gi|152029968|gb|ABS27736.1| response regulator receiver protein [Anaeromyxobacter sp. Fw109-5] Length = 176 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +S A LT+RE L DG S E+AE+LG++ TV ++L + KL NR++ Sbjct: 113 ASPADGLTQREREVALLVADGLRSREVAERLGIASQTVKSHLKTIFDKLGVRNRVE 168 >gi|326384821|ref|ZP_08206497.1| LuxR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326196483|gb|EGD53681.1| LuxR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 229 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE +L G ++ EIA++L L + TV ++G KLDA +R+ + +A G Sbjct: 160 LTERELEVFELVAVGLSNGEIADRLHLGLTTVKTHIGRLLTKLDARDRVHLVIRAYETGL 219 Query: 234 IC 235 + Sbjct: 220 VS 221 >gi|307323546|ref|ZP_07602756.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306891035|gb|EFN22011.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 217 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE + +G ++ +I +L LS+ TV A+L SA KLD NR+Q Sbjct: 156 LTEREREVAEAVAEGLSNTDIGTRLHLSLGTVKAHLSSALAKLDLDNRVQ 205 >gi|304407706|ref|ZP_07389357.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304343189|gb|EFM09032.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 242 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G +++ I E L +S TV ++ S K++ +R QA+ +I+FG+ Sbjct: 180 LTRREAEVLRLMAEGKSNKTIGEFLFISEKTVKNHVSSILQKMEVDDRTQAVIHSIKFGW 239 Query: 234 IC 235 + Sbjct: 240 VT 241 >gi|295395258|ref|ZP_06805465.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294971893|gb|EFG47761.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 226 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 37/65 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A LT RE L L G T++EI ++L L++ T+ ++G+ K A +R+Q + Sbjct: 157 SRLADELTPRERDILALIARGRTNQEICDELWLTMPTIKTHIGNLRAKTQARDRVQLVLF 216 Query: 228 AIRFG 232 A+R G Sbjct: 217 ALRVG 221 >gi|302865626|ref|YP_003834263.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302568485|gb|ADL44687.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 223 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 166 KRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 KR A R L+ERE L G G T+ EI+ +L +SV TV AY+ KLD NR+ Sbjct: 152 KRERAVRLLDGLSEREREVAVLLGRGRTNAEISAELFMSVATVKAYVSRLLTKLDLNNRV 211 Query: 223 Q 223 Q Sbjct: 212 Q 212 >gi|254284578|ref|ZP_04959545.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] gi|150425363|gb|EDN17139.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] Length = 224 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 37/55 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE ++L G G ++ EIA+KL +S +TV +L + K++A NR+QA+ A Sbjct: 159 LTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 213 >gi|127514434|ref|YP_001095631.1| two component LuxR family transcriptional regulator [Shewanella loihica PV-4] gi|126639729|gb|ABO25372.1| two component transcriptional regulator, LuxR family [Shewanella loihica PV-4] Length = 198 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L ++E L+LA +G +S EIA L ++ TV YL A KL+A NRI A A + G+ Sbjct: 138 LNDKERRALRLASEGRSSAEIAASLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGW 197 Query: 234 I 234 + Sbjct: 198 L 198 >gi|326800600|ref|YP_004318419.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326551364|gb|ADZ79749.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 209 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 4/69 (5%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 KR++ A LT RE L L + Y+++EIA+KL LS+ TV ++ S KL+ ++ + Sbjct: 141 KRTTVAVKLTSREQEILALIANEYSNQEIADKLFLSIRTVESHRHSLNQKLN----VKTM 196 Query: 226 AKAIRFGYI 234 A I+ Y+ Sbjct: 197 AGLIKEAYL 205 >gi|326391656|ref|ZP_08213183.1| transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] gi|325992309|gb|EGD50774.1| transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] Length = 260 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 2/107 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGD 187 GYV ++ +A+EV + ++ T++ ++ K++ + L + +T L L Sbjct: 151 GYVDISTIDKKIADEVSMVIKLLAEKIATEYEKIVKEKELNKIKIKLNDSQTKILALEAK 210 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY +IA+ LG+ V TV + KL+ N +A+ KAI+ G I Sbjct: 211 GYRESDIAKVLGIGVVTVKYHKRKIVEKLEVKNLKEAVVKAIKLGLI 257 >gi|296283884|ref|ZP_06861882.1| transcriptional regulator, AraC type [Citromicrobium bathyomarinum JL354] Length = 822 Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 4/79 (5%) Query: 160 FLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 FL R AAR L++RET L+ G + +E+A +LG+S H V +L K Sbjct: 744 FLRSVMNRDRAARASASELSKRETDVLRALATGGSDKELARELGISDHGVRFHLKGVFKK 803 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +R+ A+ +A G+I Sbjct: 804 LGVHDRLSAVVRAQEKGWI 822 >gi|261212992|ref|ZP_05927276.1| transcriptional regulator VpsT [Vibrio sp. RC341] gi|260838057|gb|EEX64734.1| transcriptional regulator VpsT [Vibrio sp. RC341] Length = 224 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 37/55 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE ++L G G ++ EIA+KL +S +TV +L + K++A NR+QA+ A Sbjct: 159 LTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 213 >gi|126348096|emb|CAJ89817.1| putative LuxR-family regulator [Streptomyces ambofaciens ATCC 23877] Length = 987 Score = 43.5 bits (101), Expect = 0.025, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 165 KKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + R + AR LT RE L+L G ++ +I E+L +S T + ++ + KLDA + Sbjct: 906 RGRLTGAREGAAVLTAREQDVLRLLALGRSNRQIGEELFISAKTASVHVSNILAKLDAAS 965 Query: 221 RIQAIAKAIRFGYI 234 R +A+A A R G + Sbjct: 966 RTEAVAVAYRQGLV 979 >gi|309799719|ref|ZP_07693936.1| DNA-binding response regulator [Streptococcus infantis SK1302] gi|308116675|gb|EFO54134.1| DNA-binding response regulator [Streptococcus infantis SK1302] Length = 210 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 4/98 (4%) Query: 130 GYVIFTS---EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS E L +V + A Q ++ +E + +LT RE LQL Sbjct: 99 GYMLKTSSADELLHAVRKVAV-GELAIEQEVSKKVEYHRNHIELHEDLTARERDVLQLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA++L +S+ TV ++ + KL +R QA Sbjct: 158 KGYENQRIADELFISLKTVKTHVSNILAKLQVSDRTQA 195 >gi|315502173|ref|YP_004081060.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315408792|gb|ADU06909.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 223 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 3/61 (4%) Query: 166 KRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 KR A R L+ERE L G G T+ EI+ +L +SV TV AY+ KLD NR+ Sbjct: 152 KRERAVRLLDGLSEREREVAVLLGRGRTNAEISAELFMSVATVKAYVSRLLTKLDLNNRV 211 Query: 223 Q 223 Q Sbjct: 212 Q 212 >gi|237650688|ref|ZP_04524940.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974] gi|237821211|ref|ZP_04597056.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974M2] Length = 199 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G++++EIA+KL LS TV Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|291299253|ref|YP_003510531.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568473|gb|ADD41438.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 228 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 3/99 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAE 196 ++AN + A +++ +F+ + + A+ +L TERE L L G ++ EIAE Sbjct: 122 VVANGESLLAPSVTRRLVAEFVARPHESTVASTDLAAVTEREREVLTLVARGLSNTEIAE 181 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +L LS+ TV ++G KL A +R Q + A G + Sbjct: 182 RLHLSLATVKTHIGHLLRKLTARDRAQLVIAAYESGLVT 220 >gi|229085929|ref|ZP_04218153.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228697365|gb|EEL50126.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 189 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 15/136 (11%) Query: 104 LSVRLEGGLLPFAGIAFPV-RLGFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVIT 158 L + E ++ G PV R K G F ++ +M L + I+ G + + T Sbjct: 57 LDSKYETKVVILTGYDLPVYRYEAQKIGVSGFINKNVMPDRLLEILIKIKEGGYYFPMST 116 Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D++E LT+ E LQL GY +EIA L S T++ ++ KLD Sbjct: 117 DYVE----------ELTDSEKQILQLLCGGYKRKEIATMLYASERTISNHIQHIFNKLDV 166 Query: 219 VNRIQAIAKAIRFGYI 234 + ++A+ K I+ GYI Sbjct: 167 SSALEAVTKGIQLGYI 182 >gi|225022291|ref|ZP_03711483.1| hypothetical protein CORMATOL_02330 [Corynebacterium matruchotii ATCC 33806] gi|224944952|gb|EEG26161.1| hypothetical protein CORMATOL_02330 [Corynebacterium matruchotii ATCC 33806] Length = 282 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 14/150 (9%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-----E 144 +S++++ + ++ + + + GG P G G S+ MLAN + Sbjct: 141 RSLEQDLAVNAAARRAEGVRGGAAPKQGRMMN---GAEWEQIRSTHSKLRMLANRIEQDD 197 Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + E C Q++ R L+ RE L G+T+ E AE++G+ T Sbjct: 198 IRAELEDLCDQMVAPV------RVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAET 251 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V +YL S KL A R +A+ A R G + Sbjct: 252 VKSYLRSVMRKLGAHTRYEAVNAARRIGAL 281 >gi|223936027|ref|ZP_03627941.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895249|gb|EEF61696.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 209 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 NL+ RE L G+ +EIAEKLG+S TV+ Y+ KL R +A+AK ++ Sbjct: 151 NLSTREQEVLDCLSQGFLYKEIAEKLGISYETVHTYIRRIYEKLQVRTRTEAVAKFLK 208 >gi|118591588|ref|ZP_01548985.1| probable transcriptional regulator protein, LuxR family protein [Stappia aggregata IAM 12614] gi|118435916|gb|EAV42560.1| probable transcriptional regulator protein, LuxR family protein [Stappia aggregata IAM 12614] Length = 239 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET L L +GY ++ IA KL LS HT+ ++ KL NR +A A Sbjct: 172 KLTKRETEVLCLISEGYQNKNIANKLSLSEHTIKLHIHHIISKLGVSNRTEAAA 225 >gi|117928181|ref|YP_872732.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648644|gb|ABK52746.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 216 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + ++ + + LT RE LQL DG IA +L +S T ++ KL A NR Sbjct: 139 MRRRMNPSGPQLTPREREVLQLMADGLGVSAIARQLFISESTTKTHVSKLYEKLGAANRA 198 Query: 223 QAIAKAIRFGYI 234 QA+ AIR G + Sbjct: 199 QALMAAIRLGLL 210 >gi|16125332|ref|NP_419896.1| LuxR family transcriptional regulator [Caulobacter crescentus CB15] gi|221234071|ref|YP_002516507.1| LuxR family transcriptional regulator [Caulobacter crescentus NA1000] gi|13422382|gb|AAK23064.1| transcriptional regulator, LuxR family [Caulobacter crescentus CB15] gi|220963243|gb|ACL94599.1| LuxR family transcriptional regulator [Caulobacter crescentus NA1000] Length = 137 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 42/69 (60%), Gaps = 2/69 (2%) Query: 162 ELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 E+F++ +A + +LT +E L+ G +++EIA LGLS +TV ++G+ KL+ Sbjct: 62 EIFQRNDAALASLSLTGQEIKVLERLAAGRSNKEIARDLGLSPNTVKTHVGNLYAKLEVS 121 Query: 220 NRIQAIAKA 228 R QA+ KA Sbjct: 122 RRTQAVGKA 130 >gi|163847483|ref|YP_001635527.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222525334|ref|YP_002569805.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668772|gb|ABY35138.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222449213|gb|ACM53479.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Chloroflexus sp. Y-400-fl] Length = 916 Score = 43.5 bits (101), Expect = 0.025, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L+L +G +++EIA L +++ TV +++ + KL +R QA+A+ R G Sbjct: 855 LSQREIEVLRLMAEGRSNQEIAGHLIIAISTVKSHVNNIFSKLGVASRTQAVARGRRLGL 914 Query: 234 I 234 I Sbjct: 915 I 915 >gi|291442172|ref|ZP_06581562.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291345067|gb|EFE72023.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 224 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 34/64 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LTERET L L G ++ EIA+ L L+ TV ++ KLD +R QA+ A Sbjct: 158 KGLTERETEVLTLVARGQSNGEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYES 217 Query: 232 GYIC 235 G + Sbjct: 218 GLVA 221 >gi|289641790|ref|ZP_06473948.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508434|gb|EFD29375.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 377 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 38/69 (55%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L RSS +LT RE L L G T+ IAEKL ++ TV +++ KL A NR Sbjct: 302 LHTTRSSKMESLTGRELEVLTLMATGATNNRIAEKLVITNGTVKSHVKRILRKLGAENRA 361 Query: 223 QAIAKAIRF 231 +AI++ +R Sbjct: 362 EAISQYLRL 370 >gi|282898244|ref|ZP_06306235.1| Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281196775|gb|EFA71680.1| Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 97 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 39/68 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S ++ L++RE + L G T++EIA KL +S TV+ ++ + K NR+ + Sbjct: 6 SQSSVTLSDREMQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILTKTRTDNRVALVRW 65 Query: 228 AIRFGYIC 235 A+++G +C Sbjct: 66 ALQWGKVC 73 >gi|290963130|ref|YP_003494312.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260652656|emb|CBG75789.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 219 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE +L G T++EI ++L +S+ TV +L + K+DA NR++ A A G Sbjct: 156 LTERERDVARLVAVGRTNQEICDRLVVSLSTVKTHLANIQQKIDARNRVEIAAWAWEQGV 215 Query: 234 I 234 + Sbjct: 216 V 216 >gi|258625244|ref|ZP_05720156.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603] gi|262173344|ref|ZP_06041021.1| transcriptional regulator VpsT [Vibrio mimicus MB-451] gi|258582491|gb|EEW07328.1| transcriptional regulator, LuxR family [Vibrio mimicus VM603] gi|261890702|gb|EEY36689.1| transcriptional regulator VpsT [Vibrio mimicus MB-451] Length = 224 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 37/55 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE ++L G G ++ EIA+KL +S +TV +L + K++A NR+QA+ A Sbjct: 159 LTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 213 >gi|229505909|ref|ZP_04395418.1| transcriptional regulator VpsT [Vibrio cholerae BX 330286] gi|229510237|ref|ZP_04399717.1| transcriptional regulator VpsT [Vibrio cholerae B33] gi|229514364|ref|ZP_04403825.1| transcriptional regulator VpsT [Vibrio cholerae TMA 21] gi|229517633|ref|ZP_04407078.1| transcriptional regulator VpsT [Vibrio cholerae RC9] gi|229522476|ref|ZP_04411892.1| transcriptional regulator VpsT [Vibrio cholerae TM 11079-80] gi|229526498|ref|ZP_04415902.1| transcriptional regulator VpsT [Vibrio cholerae bv. albensis VL426] gi|229528149|ref|ZP_04417540.1| transcriptional regulator VpsT [Vibrio cholerae 12129(1)] gi|229605441|ref|YP_002876145.1| transcriptional regulator VpsT [Vibrio cholerae MJ-1236] gi|229334511|gb|EEN99996.1| transcriptional regulator VpsT [Vibrio cholerae 12129(1)] gi|229336656|gb|EEO01674.1| transcriptional regulator VpsT [Vibrio cholerae bv. albensis VL426] gi|229340461|gb|EEO05467.1| transcriptional regulator VpsT [Vibrio cholerae TM 11079-80] gi|229345669|gb|EEO10642.1| transcriptional regulator VpsT [Vibrio cholerae RC9] gi|229348344|gb|EEO13302.1| transcriptional regulator VpsT [Vibrio cholerae TMA 21] gi|229352682|gb|EEO17622.1| transcriptional regulator VpsT [Vibrio cholerae B33] gi|229356260|gb|EEO21178.1| transcriptional regulator VpsT [Vibrio cholerae BX 330286] gi|229371927|gb|ACQ62349.1| transcriptional regulator VpsT [Vibrio cholerae MJ-1236] Length = 214 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 37/55 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE ++L G G ++ EIA+KL +S +TV +L + K++A NR+QA+ A Sbjct: 149 LTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 203 >gi|331698232|ref|YP_004334471.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326952921|gb|AEA26618.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 204 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 28/67 (41%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S LTERE L A DG T +IA +L LS TV +L SA K DA R +A+ Sbjct: 138 SQGTSPLTERERDVLVAAADGATVADIARRLHLSEGTVRNHLSSAIGKTDARTRAEAVRI 197 Query: 228 AIRFGYI 234 A G++ Sbjct: 198 ADGNGWL 204 >gi|291007045|ref|ZP_06565018.1| two-component response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 175 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L DG + EEIA+KL S T+ L +L NR A+A AIR G Sbjct: 114 GLTSREVDVLHGVADGLSLEEIAQKLAYSERTIKNILYQFMKRLGLRNRAHAVAYAIRLG 173 Query: 233 YI 234 I Sbjct: 174 II 175 >gi|302549920|ref|ZP_07302262.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467538|gb|EFL30631.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L + TV +++ + KL A +R QA+ A G Sbjct: 156 QLTEREAEVLRLMARGLSNAEIAGRLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESG 215 Query: 233 YIC 235 ++ Sbjct: 216 FVA 218 >gi|326792257|ref|YP_004310078.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium lentocellum DSM 5427] gi|326543021|gb|ADZ84880.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium lentocellum DSM 5427] Length = 519 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L L +G ++ EI ++L L++ TV ++ KL+ NRIQA+++A + G Sbjct: 458 LTPKEREILSLVAEGRSNAEIGDQLYLTIGTVKWHMNHILGKLEVKNRIQAVSEARKLGE 517 Query: 234 I 234 I Sbjct: 518 I 518 >gi|305680557|ref|ZP_07403365.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] gi|305660088|gb|EFM49587.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] Length = 281 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 64/150 (42%), Gaps = 14/150 (9%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-----E 144 +S++++ + ++ + + + GG P G G S+ MLAN + Sbjct: 140 RSLEQDLAVNAAARRAEGVRGGAAPKQGRMMN---GAEWEQIRSTHSKLRMLANRIEQDD 196 Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + E C Q++ R L+ RE L G+T+ E AE++G+ T Sbjct: 197 IRAELEDLCDQMVAPV------RVKQTTKLSARELDVLSCVALGHTNVEAAEEMGIGAET 250 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V +YL S KL A R +A+ A R G + Sbjct: 251 VKSYLRSVMRKLGAHTRYEAVNAARRIGAL 280 >gi|242373618|ref|ZP_04819192.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348586|gb|EES40188.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 200 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S+EIAEKL LS TV Y + KL + NR A KA G+ Sbjct: 140 LTHKEQVVLREIGNGLSSKEIAEKLYLSDGTVRNYTSTIIDKLYSDNRFDAWKKATAKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|14993797|gb|AAK73190.1| transcriptional activator CsaR [Pseudomonas chlororaphis subsp. aureofaciens] Length = 241 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQ DG +S EIA LG+SV+TVN +L K A N+ A A A G Sbjct: 180 ELSAREREILQWTADGKSSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYAAVLG 239 Query: 233 YI 234 I Sbjct: 240 LI 241 >gi|332072188|gb|EGI82674.1| response regulator [Streptococcus pneumoniae GA41301] Length = 199 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E S L+ G +++EIA+KL LS TV Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEISVLKGVAQGLSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|320160955|ref|YP_004174179.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994808|dbj|BAJ63579.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 217 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%) Query: 155 QVITDFLELFKKRSSAARNLTE----RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+ +F + S+ LTE RE L L +G ++ EIAE+L +S TV +L Sbjct: 133 KVVAEFARSPRPSSAKMAELTEPLSPREIEVLFLVAEGKSNREIAEQLVISEGTVKNHLS 192 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S KL A +R+QA+ +A G + Sbjct: 193 SILSKLGAKDRLQAVIRAREAGIL 216 >gi|318060483|ref|ZP_07979206.1| regulatory protein LuxR [Streptomyces sp. SA3_actG] gi|318076515|ref|ZP_07983847.1| regulatory protein LuxR [Streptomyces sp. SA3_actF] Length = 223 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LTERE L+L DG ++ EIAE+L +S+HTV ++ +K +R QA Sbjct: 163 DLTEREVDVLRLIRDGLSNAEIAERLVVSLHTVKTHVSRVLMKTGCQSRAQA 214 >gi|256783050|ref|ZP_05521481.1| two-component system response regulator [Streptomyces lividans TK24] Length = 263 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE + DG + EIAE+L ++V TV A+ GS KL NR+Q Sbjct: 190 LTEREWETARAVADGLGNPEIAERLHITVATVKAHTGSLFAKLGVENRVQ 239 >gi|123965417|ref|YP_001010498.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9515] gi|123199783|gb|ABM71391.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9515] Length = 92 Score = 43.5 bits (101), Expect = 0.026, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L DG T++EIA KL +S TV+ ++ + K + NR+ + A+ G Sbjct: 16 LSSREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHGK 75 Query: 234 IC 235 IC Sbjct: 76 IC 77 >gi|13473807|ref|NP_105375.1| transcriptional regulatory [Mesorhizobium loti MAFF303099] gi|14024558|dbj|BAB51161.1| transcriptional regulatory [Mesorhizobium loti MAFF303099] Length = 862 Score = 43.5 bits (101), Expect = 0.026, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 43/71 (60%), Gaps = 2/71 (2%) Query: 166 KRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +R++ A + LT+R+ LQL G +++ IAE L +S TV+ ++ + KLDAV+R + Sbjct: 792 RRTTRANSAGLTQRQMEVLQLIERGLSNKRIAEHLAISPKTVDHHVSAVLGKLDAVSRGE 851 Query: 224 AIAKAIRFGYI 234 A A A G I Sbjct: 852 ASAAARASGLI 862 >gi|307707707|ref|ZP_07644186.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] gi|307616205|gb|EFN95399.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] Length = 199 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G++++EIA+KL LS TV Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|302388953|ref|YP_003824774.1| two component transcriptional regulator, LuxR family [Thermosediminibacter oceani DSM 16646] gi|302199581|gb|ADL07151.1| two component transcriptional regulator, LuxR family [Thermosediminibacter oceani DSM 16646] Length = 213 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 7/109 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERETSC 181 +GY++ + L V + G Y +I ++ L + S A+R LT RE Sbjct: 101 SGYILKDIDPQALVEAVRAVSRGETYIQPTLTRALIAEYNRLSQPISRASRPLTAREKEV 160 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + +G ++ EI+EKLG+S TV ++ S KL+ ++R Q A++ Sbjct: 161 MAYIAEGMSNIEISEKLGISEKTVKNHVSSILRKLNLMDRTQVAVYALK 209 >gi|256377037|ref|YP_003100697.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921340|gb|ACU36851.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 208 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G+ + EIA K+ S TV L T +L+ NR A+ +R G Sbjct: 147 TLTPREADMLRLVSEGFGTAEIAVKMSFSERTVKNVLHEVTTRLNLRNRAHAVGYVMRHG 206 Query: 233 YI 234 I Sbjct: 207 LI 208 >gi|158312391|ref|YP_001504899.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158107796|gb|ABW09993.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 219 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L+ +G ++ EIA L LSV TV ++ KL +R QA+ A R Sbjct: 149 ADQLTDREAEVLRALAEGRSNTEIAAVLNLSVETVRTHVKRILSKLGVRDRTQAVVWAYR 208 Query: 231 FGYI 234 G++ Sbjct: 209 AGFV 212 >gi|283457639|ref|YP_003362223.1| response regulator [Rothia mucilaginosa DY-18] gi|283133638|dbj|BAI64403.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Rothia mucilaginosa DY-18] Length = 235 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + A LTERE L+ A G T+++IA L LS TV YL +A K A R A+ A Sbjct: 170 TGASPLTEREAQVLREAASGGTAQQIASALFLSAGTVRNYLSAAMAKTGASTRQDAVRIA 229 Query: 229 IRFGYI 234 G++ Sbjct: 230 TENGWL 235 >gi|239933765|ref|ZP_04690718.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 212 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 34/64 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LTERET L L G ++ EIA+ L L+ TV ++ KLD +R QA+ A Sbjct: 146 KGLTERETEVLTLVARGQSNGEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYES 205 Query: 232 GYIC 235 G + Sbjct: 206 GLVA 209 >gi|256395900|ref|YP_003117464.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362126|gb|ACU75623.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 232 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R+L+ RE L+L DG +++ I + +GLS TV ++L KL +R +A A+R Sbjct: 169 RDLSAREIEVLRLVADGRSNKAIGQAMGLSALTVKSHLARIARKLGTGDRAGMVAVALRG 228 Query: 232 GYI 234 G I Sbjct: 229 GTI 231 >gi|326442029|ref|ZP_08216763.1| LuxR family two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 229 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE ++ G T+EE+A +L +++ TV +LG+ KL A NR++ A A G Sbjct: 169 LTERELDVIRRVARGRTNEEVAAELYVTLSTVKTHLGNVQRKLSARNRVEIAAWAWENGL 228 Query: 234 I 234 + Sbjct: 229 V 229 >gi|218506954|ref|ZP_03504832.1| transcriptional activator protein [Rhizobium etli Brasil 5] Length = 179 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE CL++ +G +++I +L +SV V YL SA KL +A+A+A Sbjct: 118 RLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARA 173 >gi|169628613|ref|YP_001702262.1| putative two-component system response regulator LuxR [Mycobacterium abscessus ATCC 19977] gi|169240580|emb|CAM61608.1| Putative two-component system response regulator LuxR [Mycobacterium abscessus] Length = 218 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 8/114 (7%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-----NLTERETSC 181 G+++ S L V A G Y V + L +++ +A LT RE Sbjct: 103 GFILKDSPAEELVRAVHAVARGEAYLDPAVTSRVLNAYRRAPAAVSGDAQDKLTARELDV 162 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L G T+ EIAE+L +S TV +++G VKLD +R AI A G + Sbjct: 163 LALIASGATNSEIAEQLVISEVTVKSHIGRIFVKLDLRDRAAAIVYAYDHGIVT 216 >gi|296284992|ref|ZP_06862990.1| two component LuxR family transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 216 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G+ +E+A+KL ++V TV ++ + KL+ + QA+A A R G Sbjct: 156 LTAREKDILRLIAHGFKRQEVADKLNITVGTVGTHINNVYRKLEVGSNTQAVATANRLG 214 >gi|257054193|ref|YP_003132025.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256584065|gb|ACU95198.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 214 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R L+ERE S L+L G G ++ EIAE+L L+ TV Y+ S KL R QA Sbjct: 144 ERPDPLDKLSERERSVLELIGQGLSNREIAERLFLAEKTVKNYVTSLLSKLGMRRRTQAA 203 Query: 226 AKAIR 230 A R Sbjct: 204 AWVAR 208 >gi|114769502|ref|ZP_01447128.1| DNA-binding response regulator, LuxR family protein [alpha proteobacterium HTCC2255] gi|114550419|gb|EAU53300.1| DNA-binding response regulator, LuxR family protein [alpha proteobacterium HTCC2255] Length = 222 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 44/75 (58%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A +++ F+++ + + LT+RE LQ DG +++E+AE + +S++TV +L + Sbjct: 126 ASGKMVFPFMDVRELQDDPLFMLTKREKIILQFLADGSSNKELAESMKISINTVKFHLSN 185 Query: 212 ATVKLDAVNRIQAIA 226 KL NR QAI+ Sbjct: 186 LYEKLGVKNRSQAIS 200 >gi|86358374|ref|YP_470266.1| transcriptional regulator protein [Rhizobium etli CFN 42] gi|86282476|gb|ABC91539.1| probable transcriptional regulator protein [Rhizobium etli CFN 42] Length = 230 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT +E CL+L +GY+++ IA L L +K A NR QAIAKA+ G Sbjct: 167 SLTVQELRCLELMAEGYSTQRIARALDLKHDETRDLEAGIILKFRANNRFQAIAKAVLLG 226 Query: 233 YI 234 + Sbjct: 227 IV 228 >gi|94984291|ref|YP_603655.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554572|gb|ABF44486.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 200 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+ A G ++ IA +L LS TV YL A KL NRI+A KA G+ Sbjct: 140 LTERERQVLRAAEGGASTAVIAARLNLSEGTVRNYLSEAISKLGCENRIEAARKAREQGW 199 Query: 234 I 234 + Sbjct: 200 L 200 >gi|262403032|ref|ZP_06079592.1| transcriptional regulator VpsT [Vibrio sp. RC586] gi|262350531|gb|EEY99664.1| transcriptional regulator VpsT [Vibrio sp. RC586] Length = 224 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 37/55 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE ++L G G ++ EIA+KL +S +TV +L + K++A NR+QA+ A Sbjct: 159 LTKREQQIIKLLGSGSSNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 213 >gi|260467405|ref|ZP_05813576.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259028801|gb|EEW30106.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 863 Score = 43.1 bits (100), Expect = 0.027, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+++A LT+R+ LQL G +++ IAE L +S TV+ ++ + KLDA++R +A A Sbjct: 797 RANSA-GLTQRQMEVLQLIERGLSNKRIAEHLAISPKTVDHHVSAVLGKLDAISRGEATA 855 Query: 227 KAIRFGYI 234 A G I Sbjct: 856 AARDSGLI 863 >gi|302530152|ref|ZP_07282494.1| two component transcriptional regulator [Streptomyces sp. AA4] gi|302439047|gb|EFL10863.1| two component transcriptional regulator [Streptomyces sp. AA4] Length = 197 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R+ NL+ RE L+L +G+ + EIA KL S TV + T +L NR A+ Sbjct: 129 RRNGDRTNLSPREVDVLRLMAEGWDTAEIANKLCYSERTVKNVIYGMTNRLKLRNRPHAV 188 Query: 226 AKAIRFGYI 234 A A+R G I Sbjct: 189 AYALRAGVI 197 >gi|228476314|ref|ZP_04061015.1| response regulator protein VraR [Staphylococcus hominis SK119] gi|314936061|ref|ZP_07843410.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp. hominis C80] gi|228269597|gb|EEK11103.1| response regulator protein VraR [Staphylococcus hominis SK119] gi|313655878|gb|EFS19621.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp. hominis C80] Length = 209 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ KK++ LTERE L L GY+++EIA +++ TV ++ + Sbjct: 129 EVLVKMRNRMKKKAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILS 188 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A + I Sbjct: 189 KLEVQDRTQAVIYAFQHNLI 208 >gi|114571288|ref|YP_757968.1| two component LuxR family transcriptional regulator [Maricaulis maris MCS10] gi|114341750|gb|ABI67030.1| two component transcriptional regulator, LuxR family [Maricaulis maris MCS10] Length = 201 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G ++EIA L + TV +L S ++KLDA NR + + KAI+ G Sbjct: 139 SLTPREREVLFCLQRGEANKEIARSLEIQETTVKLHLRSLSLKLDARNRTEVVVKAIQAG 198 Query: 233 YIC 235 ++ Sbjct: 199 FLA 201 >gi|148655770|ref|YP_001275975.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148567880|gb|ABQ90025.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 254 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 7/99 (7%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIA 195 N+V+++ +V++ F L + ++ L++RE L+ G ++ EIA Sbjct: 135 NDVVLDDPKVAGRVLSQFRNLPQDLTNLPEVEFPLFTPLSDREIEVLERIAAGGSNREIA 194 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L +S TV ++ S KL +R QA+ A+R G+I Sbjct: 195 EALHISTQTVKNHISSILRKLSLNDRTQAVLYALRRGWI 233 >gi|21222167|ref|NP_627946.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|256786745|ref|ZP_05525176.1| two component system response regulator [Streptomyces lividans TK24] gi|289770639|ref|ZP_06530017.1| two component system response regulator [Streptomyces lividans TK24] gi|10432460|emb|CAC10294.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] gi|289700838|gb|EFD68267.1| two component system response regulator [Streptomyces lividans TK24] Length = 224 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LTERET L L G ++ EIA L L+ TV ++ KLD +R QA+ A Sbjct: 158 KGLTERETEVLTLVARGQSNTEIARTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYES 217 Query: 232 GYIC 235 G + Sbjct: 218 GLVA 221 >gi|307709859|ref|ZP_07646308.1| DNA-binding response regulator [Streptococcus mitis SK564] gi|307619408|gb|EFN98535.1| DNA-binding response regulator [Streptococcus mitis SK564] Length = 199 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G++++EIA+KL LS TV Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|308067670|ref|YP_003869275.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] gi|305856949|gb|ADM68737.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] Length = 199 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + LTERE + L L DG ++EIA +L L+ TV Y+ KL NR Sbjct: 126 ELVDDAYAEVNPLTEREKTVLALIADGKNTKEIAGELYLTTGTVRNYISVILDKLGVSNR 185 Query: 222 IQAIAK 227 I+AI + Sbjct: 186 IEAITR 191 >gi|303241719|ref|ZP_07328216.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302590720|gb|EFL60471.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 216 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 9/104 (8%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY-------QVITDF--LELFKKRSSAARNLTERETS 180 GYV+ ++ ++L + G Y +++ +F + L K S NLT RE Sbjct: 102 GYVLKDADPVVLVEAIRSVNRGQSYIQANMTRELVREFNKITLHDKSKSEESNLTAREVE 161 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+L +G ++EIA++L +S TV ++ + KL+ +R QA Sbjct: 162 VLELIAEGMINKEIAKRLYISEKTVKNHVSNIFRKLNVSDRTQA 205 >gi|269957384|ref|YP_003327173.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306065|gb|ACZ31615.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 234 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 37/66 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A LT+RE L+L G ++ EIA L ++ TV ++G KLDA +R+QA+ A Sbjct: 165 AALATLTDREREVLELMARGRSNTEIAADLFVAEATVKTHVGRILAKLDARDRVQAVVLA 224 Query: 229 IRFGYI 234 G + Sbjct: 225 YETGVV 230 >gi|296140116|ref|YP_003647359.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296028250|gb|ADG79020.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 215 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 43/94 (45%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 LA ++ + QV++ FL L+ RE L L DG ++ EI + L Sbjct: 117 LAEGGVVLSPKVASQVVSGFLGGVAVDDLGTERLSPREREVLVLLADGLSNLEIGRTMHL 176 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SV TV ++ + KL NR+QA A R G + Sbjct: 177 SVGTVKDHVSALLAKLGVANRVQAALVAQRAGLL 210 >gi|291295044|ref|YP_003506442.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470003|gb|ADD27422.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 194 Score = 43.1 bits (100), Expect = 0.027, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 37/69 (53%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ LT RE LQ G +++EIA ++ +S TV +L KL+A NR++A+ Sbjct: 125 RAPELPRLTAREQEVLQWMAQGLSTKEIARQMHISPETVKDHLLRLYEKLEARNRVEALE 184 Query: 227 KAIRFGYIC 235 +A G + Sbjct: 185 RARSLGLLS 193 >gi|329941415|ref|ZP_08290694.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299946|gb|EGG43845.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 226 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L DG ++ EIA L +S TV ++ KL+ +R+QA+ A R G Sbjct: 165 LTPRELEVLRLIADGLSNSEIAATLVISQETVKTFVSRILTKLNLRDRVQAVVYAFRHG 223 >gi|302557464|ref|ZP_07309806.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302475082|gb|EFL38175.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 230 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G G +++EI +L LS T ++ A VKL A +R Q + A R G Sbjct: 168 LTQREREVLALVGQGLSNDEIGAELCLSPATARTHVSHAMVKLGARDRAQLVVVAYRTGL 227 Query: 234 IC 235 + Sbjct: 228 VS 229 >gi|302521872|ref|ZP_07274214.1| LOW QUALITY PROTEIN: two component transcriptional regulator [Streptomyces sp. SPB78] gi|302430767|gb|EFL02583.1| LOW QUALITY PROTEIN: two component transcriptional regulator [Streptomyces sp. SPB78] Length = 274 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 33/52 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LTERE L+L DG ++ EIAE+L +S+HTV ++ +K +R QA Sbjct: 214 DLTEREVDVLRLIRDGLSNAEIAERLVVSLHTVKTHVSRVLMKTGCQSRAQA 265 >gi|298246329|ref|ZP_06970135.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553810|gb|EFH87675.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 233 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++EIA L +S T ++ S KL A NR +A+A A + G Sbjct: 170 ELTERELEVLRLLAQGMPNKEIASHLVISERTAKFHVSSIMSKLGATNRTEAVALAAQRG 229 Query: 233 YI 234 I Sbjct: 230 LI 231 >gi|269980449|gb|ACZ56323.1| putative luxR-like virulence response regulator [Mycobacterium chubuense NBB4] Length = 280 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 8/103 (7%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKR--------SSAARNLTERETSCLQLAGDGYTS 191 ++ + ++ AC +IT E+ R S L+ RE L+ G ++ Sbjct: 178 LVGVDAVVHKDNACAVLITAITEVAAGRRYCDPVISSGDPLALSRREYQVLERLAMGESN 237 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA++L L+ +TV +Y+ S LDA NR+ A+ KA + G + Sbjct: 238 SEIAQQLRLAPNTVKSYVQSLLAHLDARNRLDAVVKAQQAGML 280 >gi|262164491|ref|ZP_06032229.1| transcriptional regulator VpsT [Vibrio mimicus VM223] gi|262026871|gb|EEY45538.1| transcriptional regulator VpsT [Vibrio mimicus VM223] Length = 224 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 37/55 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE ++L G G ++ EIA+KL +S +TV +L + K++A NR+QA+ A Sbjct: 159 LTKREQQIIKLLGSGASNIEIADKLFVSENTVKTHLHNVFKKINAKNRLQALIWA 213 >gi|322377555|ref|ZP_08052045.1| DNA-binding response regulator [Streptococcus sp. M334] gi|321281320|gb|EFX58330.1| DNA-binding response regulator [Streptococcus sp. M334] Length = 199 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G++++EIA+KL LS TV Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|14586749|gb|AAK70347.1|AF333002_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia cepacia] Length = 239 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 163 LFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + K S AR T RE L +G T+ EI + L +S TVN ++ + KL A N+ Sbjct: 164 MVPKLSPEARVTQTAREREVLCWTAEGKTACEIGQILSISERTVNFHVNNILEKLGASNK 223 Query: 222 IQAIAKAIRFGYI 234 +QA+ KAI G I Sbjct: 224 VQAVVKAISAGLI 236 >gi|78183869|ref|YP_376303.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78168163|gb|ABB25260.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 92 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE +QL +G T++EIA++L +S TV+ ++ + K + NR+ + A+ G Sbjct: 14 LSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMDNGK 73 Query: 234 IC 235 IC Sbjct: 74 IC 75 >gi|300789938|ref|YP_003770229.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299799452|gb|ADJ49827.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 192 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G+ + EIA KL S TV + + T +L+ NR A+A A+R G Sbjct: 132 LTPREVDVLRLMAEGWDTAEIAGKLCYSERTVKNVIYAMTNRLNLRNRPHAVAYAVRAGV 191 Query: 234 I 234 I Sbjct: 192 I 192 >gi|291457703|ref|ZP_06597093.1| response regulator of two-component system [Bifidobacterium breve DSM 20213] gi|291380756|gb|EFE88274.1| response regulator of two-component system [Bifidobacterium breve DSM 20213] Length = 261 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 6/74 (8%) Query: 155 QVITDFLE-LFKKRSSAARNL----TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 Q+I D E + R AAR L +RE + LA +GYT+ EIA ++ +S T A+L Sbjct: 175 QLIDDLSESQPRSRRDAARELLGALPDREREAVMLAAEGYTNAEIASRMFISERTAKAHL 234 Query: 210 GSATVKLDAVNRIQ 223 SA KL+ + R+Q Sbjct: 235 SSAADKLN-MGRVQ 247 >gi|254462681|ref|ZP_05076097.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2083] gi|206679270|gb|EDZ43757.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium HTCC2083] Length = 244 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 74/184 (40%), Gaps = 22/184 (11%) Query: 71 TYGDDFLFHFNS---------------GLLPIIWQSIQE----ETVIESSGQLSVRLEGG 111 TY D + H+ S + PI WQ ++E + V E + ++ +G Sbjct: 60 TYDDAWKEHYTSQRFQNIDPTLHLPMRSIAPIDWQRLREHRDFDRVFEHARDFKIKDQGL 119 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 +P G V L + T E L VI E A + ++ + Sbjct: 120 SVPIHGPYGEVGLISVTRDCSLGTWE--KLRKNVITELQTAAVSLHDTVMQSDTLGYALR 177 Query: 172 R-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 R L+ RE LQ G + +I L +S TV +L SA KL A++ QA+ +AI Sbjct: 178 RPQLSSRECEVLQWTAAGKSQIDIGVILTISSRTVEVHLRSARSKLSALSTPQAVGRAIG 237 Query: 231 FGYI 234 G+I Sbjct: 238 MGFI 241 >gi|254391784|ref|ZP_05006980.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294813562|ref|ZP_06772205.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] gi|197705467|gb|EDY51279.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294326161|gb|EFG07804.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE ++ G T+EE+A +L +++ TV +LG+ KL A NR++ A A G Sbjct: 166 LTERELDVIRRVARGRTNEEVAAELYVTLSTVKTHLGNVQRKLSARNRVEIAAWAWENGL 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|332670631|ref|YP_004453639.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332339669|gb|AEE46252.1| transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 144 Score = 43.1 bits (100), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE S L+L DG ++ I E+LGLS TV ++L + KL +R + +A + R G Sbjct: 83 LTAREISVLKLVADGRSNRLIGEELGLSALTVKSHLARISRKLGTGDRAELVAISFRGGV 142 Query: 234 I 234 + Sbjct: 143 L 143 >gi|307331693|ref|ZP_07610799.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306882672|gb|EFN13752.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 302 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L G T+ AE+LGL TV +YL S+ KL A R+ A+ +A R G Sbjct: 240 ELSPREVDVLACVASGATNSTAAERLGLRPETVKSYLRSSMRKLGAHTRLHAVVEARRAG 299 Query: 233 YI 234 + Sbjct: 300 LL 301 >gi|256395828|ref|YP_003117392.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362054|gb|ACU75551.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 258 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L+L G ++ EIAE+L +S TV +L A KL+ +R QA+ A G Sbjct: 189 LTTRETDVLRLVATGLSNGEIAERLVVSEGTVKTHLNRAMAKLNLSSRAQAVVLAYESGL 248 Query: 234 IC 235 + Sbjct: 249 VV 250 >gi|314933499|ref|ZP_07840864.1| DNA-binding response regulator, LuxR family [Staphylococcus caprae C87] gi|313653649|gb|EFS17406.1| DNA-binding response regulator, LuxR family [Staphylococcus caprae C87] Length = 200 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S+EIAEKL LS TV Y + K+ + NR A K I G+ Sbjct: 140 LTHKEQVVLREIGNGLSSKEIAEKLYLSNGTVRNYTSTIIDKMCSENRFDAWKKGIDKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|258650587|ref|YP_003199743.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553812|gb|ACV76754.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 938 Score = 43.1 bits (100), Expect = 0.029, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 2/63 (3%) Query: 163 LFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L + RS AA LT+RE L G G T+++IA +L LSV TV +++ +A KL + Sbjct: 866 LLEHRSPAAHGDGLTDREAEVAGLVGQGLTNKQIAAQLFLSVRTVESHVRNALAKLQLTS 925 Query: 221 RIQ 223 R + Sbjct: 926 RTE 928 >gi|182436087|ref|YP_001823806.1| LuxR family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776712|ref|ZP_08235977.1| regulatory protein LuxR [Streptomyces cf. griseus XylebKG-1] gi|178464603|dbj|BAG19123.1| putative LuxR-family transcriptional regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657045|gb|EGE41891.1| regulatory protein LuxR [Streptomyces cf. griseus XylebKG-1] Length = 330 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +E L L G+T A +LG+S+ TV T ++ A +R QA A+A R G Sbjct: 269 GLTPQEDELLSLLAKGHTDATAARRLGVSLRTVRRMNAELTARMQARSRFQAGAEAARLG 328 Query: 233 YI 234 +I Sbjct: 329 WI 330 >gi|239828352|ref|YP_002950976.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239808645|gb|ACS25710.1| two component transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 225 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ + KL+ +R QA+ AI+ G+ Sbjct: 162 LTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNVNDRTQAVVVAIKNGW 221 Query: 234 I 234 + Sbjct: 222 V 222 >gi|170700574|ref|ZP_02891575.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170134522|gb|EDT02849.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 240 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ R+ CL G G TS EI +G+S HTV+ +L A L+ +R +A A +G Sbjct: 178 LSPRQQECLYWVGQGKTSPEIGMIMGISHHTVDYHLSEAMKILNVNSRTKAAVFASTYGL 237 Query: 234 I 234 I Sbjct: 238 I 238 >gi|167006408|ref|YP_001661631.1| putative two-component system regulator [Streptomyces sp. HK1] gi|166162490|gb|ABY83611.1| putative two-component system regulator [Streptomyces sp. HK1] Length = 220 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 4/90 (4%) Query: 149 AHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 A G ++I +F L + + R +LTERET + L G ++ EIA++L L+ T Sbjct: 126 APGITRRLIAEFSRLDDRPRAPLRQRIEDLTERETEVVALIAHGLSNAEIAQRLVLAEQT 185 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++G +KL +R QA A G + Sbjct: 186 VKTHVGRILLKLGLRDRTQAAVFAYESGLV 215 >gi|82701372|ref|YP_410938.1| LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82409437|gb|ABB73546.1| transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 267 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 53/115 (46%), Gaps = 12/115 (10%) Query: 125 GFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-------R 172 G H YV+F+S + ++A E+++ + +T + + S A Sbjct: 145 GHHDCLYVVFSSKDKLDDSTLIAMEILLPYLDTALRRVTPLPQHSCRPSLLADAPEYDLH 204 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE + G T+ EI L +S +TV +L KLD NR+QAI+K Sbjct: 205 GLSEREVEIMTWVRKGKTNAEIGSILRISSYTVKNHLHQIFRKLDVYNRVQAISK 259 >gi|298491036|ref|YP_003721213.1| LuxR family transcriptional regulator ['Nostoc azollae' 0708] gi|298232954|gb|ADI64090.1| transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 91 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + L G T++EIA KL +S TV+ ++ + K NR+ + A+++G Sbjct: 12 LSDRELQIIDLVAGGLTNQEIAAKLEISKRTVDNHISNILTKTKTDNRVALVRWALQWGK 71 Query: 234 IC 235 +C Sbjct: 72 VC 73 >gi|22298266|ref|NP_681513.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294445|dbj|BAC08275.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 209 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L++RE L+L +GY++ EIA KL LS +TV ++ KL +R+QA A+R G Sbjct: 148 HLSQRELDVLKLMVEGYSNPEIAGKLFLSPNTVKTHVRGILNKLAVDDRVQAAVVALRNG 207 Query: 233 YI 234 + Sbjct: 208 LV 209 >gi|325272909|ref|ZP_08139236.1| ATP-dependent transcription regulator LuxR [Pseudomonas sp. TJI-51] gi|324101953|gb|EGB99472.1| ATP-dependent transcription regulator LuxR [Pseudomonas sp. TJI-51] Length = 665 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L+L G ++++I+E+L +S+HTV + KL R QA+AKA G Sbjct: 604 LSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHINSKLGVERRTQAVAKAKSLGL 663 Query: 234 I 234 + Sbjct: 664 L 664 >gi|311895893|dbj|BAJ28301.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 10/93 (10%) Query: 149 AHGACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLS 201 A ++I DF + R + R+ LT RET L+L G +++EIA L L+ Sbjct: 131 APSVTRRLIADF---ARNRPAPRRDPRLRLNGLTPRETEVLELIARGLSNQEIAAHLVLA 187 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++G KLD +R QA+ A G + Sbjct: 188 EQTVKTHVGRILGKLDLRDRAQAVVLAYESGLV 220 >gi|310640405|ref|YP_003945163.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309245355|gb|ADO54922.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 199 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + LTERE + L L DG ++EIA +L L+ TV Y+ KL NR Sbjct: 126 ELVDDAYAEVNPLTEREKTVLALIADGKNTKEIAGELFLTTGTVRNYISVILDKLGVSNR 185 Query: 222 IQAIAK 227 I+AI + Sbjct: 186 IEAITR 191 >gi|289432845|ref|YP_003462718.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT] gi|288946565|gb|ADC74262.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. GT] Length = 232 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 7/107 (6%) Query: 135 TSEFLMLANEVIIEAHGACYQVITD-FLELFKKRSSAA------RNLTERETSCLQLAGD 187 TSE L+ A ++ H +++ +E + ++++ A LT RE L L Sbjct: 107 TSEELVRAVREAMQGHRYLSPPLSEKAIEAYMEKTAEATSLDPYETLTIREREVLHLVSQ 166 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GYT EIAEKL +S TV + + KLD N+ Q + A++ G I Sbjct: 167 GYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213 >gi|73748824|ref|YP_308063.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|73660540|emb|CAI83147.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] Length = 232 Score = 43.1 bits (100), Expect = 0.029, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L GYT EIAEKL +S TV + + KLD N+ Q + A++ G Sbjct: 152 TLTIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRG 211 Query: 233 YI 234 I Sbjct: 212 II 213 >gi|271967312|ref|YP_003341508.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510487|gb|ACZ88765.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 218 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I D+L+ ++ + LT RE ++L +G +++EIAE L +SV TV+ + Sbjct: 132 GAITALIRDYLQRVRQGERVPESILTPREEEVVKLIAEGNSAKEIAETLVISVKTVDRHR 191 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R+ AIR G + Sbjct: 192 ANILQKLGMRDRLDLTRYAIRAGLV 216 >gi|269794179|ref|YP_003313634.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096364|gb|ACZ20800.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 236 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 38/68 (55%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++SA +LTERE L L G ++EIA L ++ T+ ++G KL A +R+QA+ Sbjct: 165 QASAVDSLTEREREVLVLMARGRANQEIASDLFVAEATIKTHVGRILSKLGARDRVQAVV 224 Query: 227 KAIRFGYI 234 A G + Sbjct: 225 TAYETGLV 232 >gi|254786770|ref|YP_003074199.1| positive regulator AgmR [Teredinibacter turnerae T7901] gi|237687202|gb|ACR14466.1| positive regulator AgmR [Teredinibacter turnerae T7901] Length = 212 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT ++ + L+ +G +++EIA +LG+S T Y+ +LDA NR QA+ A R G Sbjct: 143 DLTTQQRATLRYLAEGLSNKEIAIQLGVSPSTAKEYVSKVIERLDATNRTQAVLAAQREG 202 Query: 233 YI 234 + Sbjct: 203 LL 204 >gi|229592530|ref|YP_002874649.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229364396|emb|CAY52185.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 830 Score = 43.1 bits (100), Expect = 0.030, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE LQL G ++ EIA++L +S+HTV + KL R QA+AKA G Sbjct: 769 LSQRELEVLQLIALGNSNLEIADRLFISLHTVKTHARRIHSKLGVERRTQAVAKAKALGL 828 Query: 234 I 234 + Sbjct: 829 M 829 >gi|149187165|ref|ZP_01865463.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] gi|148838701|gb|EDL55640.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] Length = 225 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 5/79 (6%) Query: 155 QVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +++ ++++L++ + N LT RE ++L G+G ++ +IAE L +S +TV A+L Sbjct: 137 KLVYEYIKLYRGKHCHTTNPYYTKLTRREQEIIKLLGNGASNTQIAETLFVSENTVKAHL 196 Query: 210 GSATVKLDAVNRIQAIAKA 228 + K+ NR+QA+ A Sbjct: 197 HNTFKKIKVNNRLQALIWA 215 >gi|126725039|ref|ZP_01740882.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2150] gi|126706203|gb|EBA05293.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2150] Length = 226 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 36/69 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S + L+ RE+ L L GY+ A+ L +S HT+ Y+ +A KL + N A+ Sbjct: 156 KLMSPVKALSPRESDSLTLLAMGYSRAHAADTLKISEHTLRVYIEAARFKLGSANTTHAV 215 Query: 226 AKAIRFGYI 234 A A+ G I Sbjct: 216 AAALSRGLI 224 >gi|147669585|ref|YP_001214403.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146270533|gb|ABQ17525.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] Length = 232 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 53/107 (49%), Gaps = 7/107 (6%) Query: 135 TSEFLMLANEVIIEAHGACYQVITD-FLELFKKRSSAA------RNLTERETSCLQLAGD 187 TSE L+ A ++ H +++ +E + ++++ A LT RE L L Sbjct: 107 TSEELVRAVREAMQGHRYLSPPLSEKAIEAYMEKTAEATSLDPYETLTIREREVLHLVSQ 166 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GYT EIAEKL +S TV + + KLD N+ Q + A++ G I Sbjct: 167 GYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213 >gi|293607035|ref|ZP_06689378.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292814525|gb|EFF73663.1| DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 218 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ R+LT ++ LQ+ G G +++IA +L +S T+ A++ + KL NR QA+ Sbjct: 144 AATVRDLTPQQFRVLQMVGAGLLNKQIAHELQISEATIKAHMTAIMRKLRVTNRTQAVLI 203 Query: 228 AIRFG 232 A R G Sbjct: 204 AGRLG 208 >gi|326332686|ref|ZP_08198949.1| putative transcriptional regulatory protein DegU [Nocardioidaceae bacterium Broad-1] gi|325949514|gb|EGD41591.1| putative transcriptional regulatory protein DegU [Nocardioidaceae bacterium Broad-1] Length = 219 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++ +IAEKL +SV+T+ +++ A K++ R QA++ AI G Sbjct: 130 GLTTREVEVLALITQGLSNADIAEKLVVSVNTLKSHIRQAYRKIEVTTRSQAVSWAITHG 189 Query: 233 Y 233 + Sbjct: 190 F 190 >gi|310639866|ref|YP_003944624.1| transcriptional regulatory protein degu (protease production enhancerprotein) [Paenibacillus polymyxa SC2] gi|309244816|gb|ADO54383.1| Transcriptional regulatory protein DegU (Protease production enhancerprotein) [Paenibacillus polymyxa SC2] Length = 217 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 9/115 (7%) Query: 129 NGYVIFTS--EFLMLANEVIIEAHGACY-----QVITDFLELFKKRSSAA--RNLTERET 179 +GY++ ++ E L+ A + + E Y ++++++L+ K+ A +L+ERE Sbjct: 100 SGYILKSAPHEELLAAIQSVAEGSAYLYPNATKRLMSEYLDKIKQEGIAGPYESLSEREK 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++EIAE L +SV TV ++ + KL+ R + + A++ G + Sbjct: 160 EILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLNLKTRPELVKFALKKGLL 214 >gi|325104672|ref|YP_004274326.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pedobacter saltans DSM 12145] gi|324973520|gb|ADY52504.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pedobacter saltans DSM 12145] Length = 469 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 32/49 (65%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +LTERET L + T++EI+EKL +S+ T ++G+ +KLD NR Sbjct: 410 SLTERETEVLMCIFNRLTNQEISEKLFISLSTTKYHIGNLYLKLDVKNR 458 >gi|311031947|ref|ZP_07710037.1| two-component response regulator DegU [Bacillus sp. m3-13] Length = 239 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG +++ I E L +S TV ++ + K++ +R QA+ AI+ G+ Sbjct: 176 LTRRECEVLQLLADGKSNKAIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGW 235 Query: 234 I 234 + Sbjct: 236 V 236 >gi|307325965|ref|ZP_07605164.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306888457|gb|EFN19444.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 259 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 33/59 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NL+ RE LQL GDG T+ +IAE+L L+ TV + + KL RIQA A R Sbjct: 194 NLSPREREILQLIGDGLTNRQIAERLFLAEKTVKNRISAILSKLGVGRRIQAAVIAERI 252 >gi|271965453|ref|YP_003339649.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508628|gb|ACZ86906.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 233 Score = 43.1 bits (100), Expect = 0.030, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G G ++ EIA+ L + V TV ++ +A KL NR QA A R G Sbjct: 151 GLTDRELEVLALVGVGLSNAEIADALHVGVTTVKTHVSTAMDKLGLRNRTQAAVVAHRIG 210 Query: 233 YI 234 + Sbjct: 211 LV 212 >gi|256372733|ref|YP_003110557.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] gi|256009317|gb|ACU54884.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] Length = 222 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L+L G T+ EIAE L +S TV +L K+ A NR A+ +A+ G Sbjct: 143 LSDRERQVLELVARGRTNVEIAEALAISEATVKTHLAHVFDKVGATNRTSAVLRAMELGL 202 Query: 234 IC 235 I Sbjct: 203 IA 204 >gi|225407940|ref|ZP_03761129.1| hypothetical protein CLOSTASPAR_05161 [Clostridium asparagiforme DSM 15981] gi|225042534|gb|EEG52780.1| hypothetical protein CLOSTASPAR_05161 [Clostridium asparagiforme DSM 15981] Length = 887 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 5/94 (5%) Query: 143 NEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 NEV++ AH G+ ++ +L + + L++++T L L GY + EI+E GL Sbjct: 786 NEVMLAAHSFGSRHK---GYLAEAGRETGRPVKLSKQQTRMLTLLAQGYKNAEISEMTGL 842 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S+ T+ ++ A KL N + A+ KA G I Sbjct: 843 SIPTIKSHTSLAYKKLGVNNAMDAVLKAKELGLI 876 >gi|209863937|gb|ACI88882.1| AlnR5 two component response regulator [Streptomyces sp. CM020] Length = 201 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 50/106 (47%), Gaps = 3/106 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +GYV+ + LA I A +VI L L A+ LT RE L+LA G Sbjct: 99 DGYVLKDALPSELAQA--IRKVAAGQRVIDPQLALMAW-DGPAQQLTPREVDVLRLAAAG 155 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA++L LS+ TV YL + KL A NR+ A+ A G I Sbjct: 156 EDVRVIAKELHLSIGTVRNYLTTIVHKLGARNRVDAVRIARDNGVI 201 >gi|297198347|ref|ZP_06915744.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714401|gb|EDY58435.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 209 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 4/108 (3%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ LA V A G V ++ + R R L+ RET+ L+L Sbjct: 102 GYLLKDLPRAELARSVRAAARGETVLAPTVAARLVDQLRTRPERPR-LSARETAVLRLVA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI +L + TV +L KL +R A+ A+RFG + Sbjct: 161 DGCTNAEIGRRLYIGESTVKTHLLRVFGKLGVDDRTAAVTSAMRFGLL 208 >gi|163734517|ref|ZP_02141956.1| transcription regulator, LuxR family, putative [Roseobacter litoralis Och 149] gi|161392010|gb|EDQ16340.1| transcription regulator, LuxR family, putative [Roseobacter litoralis Och 149] Length = 267 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 51/120 (42%), Gaps = 2/120 (1%) Query: 117 GIAFPVRLGFHKNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 G+A V +N YV F L ++ I E A + EL + R A L Sbjct: 140 GVAMQVYGPNMRNAYVGLGFGEHDPNLTSDEIFELQCAAQIAHIRYCELTEYRQRTADTL 199 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE LQ G ++ IAE LG+S HTV+ KLD +R A + + G + Sbjct: 200 SPREVEILQWIARGKSNSVIAEILGISRHTVDTITRRIFEKLDVNDRTTAAIRGLGSGLV 259 >gi|302544316|ref|ZP_07296658.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461934|gb|EFL25027.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 268 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 29/114 (25%), Positives = 55/114 (48%), Gaps = 10/114 (8%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----------LTERET 179 GY++ ++ +A+ + A G +E+ + +AR+ LT RE Sbjct: 149 GYLLKSASGDEIASAIRSAAEGETLIPAGTLVEVLSRHRESARSTAEQTGRLESLTRREQ 208 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G G + +AE+L +S TV ++ KL+ ++++A+AKA +G+ Sbjct: 209 EILTLMGQGLDNRAVAEQLSISYATVRTHVRKILEKLEVRSQLEAVAKATEWGF 262 >gi|317050571|ref|YP_004111687.1| response regulator receiver [Desulfurispirillum indicum S5] gi|316945655|gb|ADU65131.1| response regulator receiver [Desulfurispirillum indicum S5] Length = 224 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L++RET LQL GYT +E+A++LG+S+ T+ + + L R + + A+ G Sbjct: 154 SLSKRETEVLQLIALGYTQQEVADQLGISIKTIETHKANIMESLGTKKRSELVRYALAHG 213 Query: 233 YIC 235 I Sbjct: 214 LIT 216 >gi|260467388|ref|ZP_05813560.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259028848|gb|EEW30152.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 242 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 1/115 (0%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLT 175 GI P+ + G V S+ + + + C L LT Sbjct: 122 GICVPIHVPLAGPGVVTMASDRMDVPPSAMPLIETLCVHTFRSLSGLGTPGDGYEPTPLT 181 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 RE L+ + G ++++IA LG++ +TV ++ + KLDA+N AI KA+R Sbjct: 182 ARERELLEWSAQGKSTDDIACILGVTRNTVESHQRNIRAKLDAINVAHAIVKALR 236 >gi|212640069|ref|YP_002316589.1| transcriptional regulator LuxR family [Anoxybacillus flavithermus WK1] gi|212561549|gb|ACJ34604.1| Transcriptional regulator LuxR family [Anoxybacillus flavithermus WK1] Length = 194 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 33/54 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE L GY+++EIA++L LS HT+ ++ + KLD R Q IAK Sbjct: 136 LSERERQVFFLLLKGYSNKEIAKELILSEHTIKNHINNLFQKLDVKRRSQLIAK 189 >gi|77362110|ref|YP_341684.1| LuxR family CSG operon transcriptional regulator [Pseudoalteromonas haloplanktis TAC125] gi|76877021|emb|CAI89238.1| putative csg operon transcription regulator (LuxR family) [Pseudoalteromonas haloplanktis TAC125] Length = 229 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 36/60 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++LT+RE S + L G ++ IA+KL +S HTV +L SA K + NR++ A R+ Sbjct: 160 QHLTKRERSVIHLIAQGASNSVIADKLNISDHTVKTHLYSAFKKTSSRNRVELANWAQRY 219 >gi|88807485|ref|ZP_01122997.1| transcriptional regulator, LuxR family protein [Synechococcus sp. WH 7805] gi|88788699|gb|EAR19854.1| transcriptional regulator, LuxR family protein [Synechococcus sp. WH 7805] Length = 227 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 36/60 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L++ G T++EIA+ L +S TV ++ S K+ +R QA+ KAI+ G Sbjct: 167 ELSEREIEVLKVLSCGMTNKEIADTLFVSAETVKTHVSSIIGKMGVKDRTQAVIKAIKAG 226 >gi|330973265|gb|EGH73331.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 240 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 175 CSRGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEAL 234 Query: 230 RFGYI 234 G I Sbjct: 235 CRGLI 239 >gi|182415045|ref|YP_001820111.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842259|gb|ACB76511.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 209 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L G +++EIA +LGL V T+ Y+ + KL +R QA+ A++ G Sbjct: 146 LSPREMEVLKLLAKGLSNKEIATQLGLVVGTIKIYVANIFNKLGVSDRTQALVTAVKRGI 205 Query: 234 I 234 I Sbjct: 206 I 206 >gi|314968011|gb|EFT12110.1| transcriptional regulator, LuxR family [Propionibacterium acnes HL037PA1] Length = 77 Score = 43.1 bits (100), Expect = 0.031, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A Sbjct: 4 SKAEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALA 63 Query: 229 IRFGYI 234 G I Sbjct: 64 YESGLI 69 >gi|308273005|emb|CBX29609.1| hypothetical protein N47_J05900 [uncultured Desulfobacterium sp.] Length = 229 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 9/97 (9%) Query: 130 GYVIFTS---EFLMLANEVIIEAHGACYQVITDFLELFK------KRSSAARNLTERETS 180 GY + +S E L+ N V+ C ++ LE + K+ S+ LT+RE Sbjct: 113 GYCLKSSSQEELLIAINAVLSGKKYVCPEISGKILEGYIEGQKTIKQDSSWDMLTQREKE 172 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L+L G+GY + EIA+ L +SV TV + + KLD Sbjct: 173 VLKLVGEGYKNLEIADYLCISVKTVEKHRANIMEKLD 209 >gi|302185070|ref|ZP_07261743.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642] Length = 240 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 ++R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 175 SSRGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEAL 234 Query: 230 RFGYI 234 G I Sbjct: 235 CRGLI 239 >gi|297191756|ref|ZP_06909154.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151051|gb|EDY65636.2| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 231 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G G ++ EIA +L +S HTV ++G+ KL +RIQA+ A G Sbjct: 149 SLTTRERETLLLLGRGLSNAEIAAELVVSEHTVKTHVGNVLAKLALRDRIQAVICAYESG 208 Query: 233 YI 234 I Sbjct: 209 LI 210 >gi|251799733|ref|YP_003014464.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547359|gb|ACT04378.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 242 Score = 43.1 bits (100), Expect = 0.031, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 38/62 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G +++ I E L +S TV ++ S K++ +R QA+ ++I++G+ Sbjct: 180 LTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVIQSIKYGW 239 Query: 234 IC 235 + Sbjct: 240 VT 241 >gi|325917865|ref|ZP_08180041.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325535911|gb|EGD07731.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 210 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F+ + + +ERE + L+L GY+++EIA L L+ TV Y+ + KL +R + Sbjct: 140 FRDQQPPSETFSEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTR 199 Query: 224 AIAKAIRFGYI 234 A+ KAI I Sbjct: 200 AVLKAITLRVI 210 >gi|297624725|ref|YP_003706159.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165905|gb|ADI15616.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 210 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE ++L GY++ EIA L +S TV ++ S KL +R +A+ KA+ GY Sbjct: 150 LTGREREVVRLMAGGYSNREIALALHISQGTVKNHVSSVLSKLGVRDRTRAVLKALELGY 209 Query: 234 I 234 + Sbjct: 210 V 210 >gi|296454490|ref|YP_003661633.1| LuxR family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296183921|gb|ADH00803.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. longum JDM301] Length = 230 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ +E L++ DG T++EIAE+LG+SV TV + A KL A +R AI+ ++ Sbjct: 170 LSGKERDTLRMYADGSTTKEIAERLGISVATVATFERRALAKLGARSRAHAISICVK 226 >gi|194291957|ref|YP_002007864.1| response regulator protein [Cupriavidus taiwanensis LMG 19424] gi|193225861|emb|CAQ71807.1| Response regulator protein; Response regulator receiver domain, HTH LuxR domain; higly similar to B. subtilis Transcriptional regulatory protein degU (Protease production enhancer protein) [Cupriavidus taiwanensis LMG 19424] Length = 223 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 FL + S+ R LT +E + L+L +G +++EIAE+LG SV TV + KL Sbjct: 135 FLHTDEPPPSSRRALTPKEATVLKLLAEGRSNKEIAERLGTSVRTVETHRLHLRRKLRVG 194 Query: 220 NRIQAIAKAIRF 231 R + + A+ F Sbjct: 195 GRAELVKYAVHF 206 >gi|118468464|ref|YP_885258.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118169751|gb|ABK70647.1| DNA-binding response regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 215 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I DFL ++ + LT RE L+L +GY++ EIA L +S TV+ + Sbjct: 129 GAITALIRDFLHRARQGGEPPDSILTPREEEVLKLIAEGYSTREIAATLTISAKTVDRHR 188 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R+ AIR G I Sbjct: 189 TNILAKLGLRDRLALTRYAIRAGLI 213 >gi|307824873|ref|ZP_07655096.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] gi|307734231|gb|EFO05085.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] Length = 236 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+ DG TS EI+ L ++ TVN ++ + KL+A N+ A KA G Sbjct: 176 LSNREIEVLRWTADGKTSSEISCILNIAERTVNFHINNVVTKLNAANKTSATIKAAMLGL 235 Query: 234 I 234 + Sbjct: 236 L 236 >gi|297194566|ref|ZP_06911964.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152332|gb|EDY66387.2| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 227 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 5/100 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFL--ELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEI 194 ++ A E ++ A ++I DF +R + R LT RET L+L G +++EI Sbjct: 122 IVAAGEALL-APSVTRRLIADFAAQRPAPRRDPSLRLNGLTPRETEVLELIARGLSNQEI 180 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A L L+ TV ++G KLD +R QA+ A G + Sbjct: 181 AGHLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLV 220 >gi|229822851|ref|ZP_04448921.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271] gi|229787664|gb|EEP23778.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271] Length = 211 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 38/67 (56%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + R LT RE L+L G GY+++ IAE+L +++ TV ++ + KL+ +R Sbjct: 138 LDQARPKPHDELTNRELDVLRLIGQGYSNQAIAEELVITLKTVKTHVSNIFTKLEVEDRT 197 Query: 223 QAIAKAI 229 QA A+ Sbjct: 198 QAAIYAV 204 >gi|271964817|ref|YP_003339013.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507992|gb|ACZ86270.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 227 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G ++ EIA +L LS TV +L S KL +R QA+ +A R G Sbjct: 165 ELTQREREILDLLASGKSNAEIARRLFLSQKTVKNHLTSIFAKLQVADRTQAVVRARRAG 224 >gi|291287493|ref|YP_003504309.1| two component transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] gi|290884653|gb|ADD68353.1| two component transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] Length = 219 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 30/43 (69%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LT+RE Q+ G+G+T+++IA KL LSV T++A+ S KL Sbjct: 154 LTDREFQVFQMIGNGFTTKQIATKLNLSVKTIDAFRESMKHKL 196 >gi|284031067|ref|YP_003380998.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810360|gb|ADB32199.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 220 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L+L G ++ EIA +L L V T+ ++ + KL A +R QA+ A G Sbjct: 156 DLTEREQEVLRLMAKGLSNAEIATELVLGVQTIKTHVANLLGKLGARDRTQAVILAYESG 215 Query: 233 YI 234 ++ Sbjct: 216 FV 217 >gi|226304156|ref|YP_002764114.1| LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226183271|dbj|BAH31375.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 872 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE L L G S +A+KL +SV+TV L + KLDA NR +AI KA Sbjct: 812 LTEREQKVLSLLALGMGSAAMADKLYVSVNTVKTQLRTLYKKLDAHNRNEAITKA 866 >gi|110681100|ref|YP_684107.1| LuxR family transcription regulator [Roseobacter denitrificans OCh 114] gi|109457216|gb|ABG33421.1| transcription regulator, LuxR family, putative [Roseobacter denitrificans OCh 114] Length = 248 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Query: 117 GIAFPVRLGFHKNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 G+A V +N YV F + L + I E A + EL + R A +L Sbjct: 121 GVAMQVYGPNMRNAYVGLGFGKQDPDLTADEIFELQCAAQIAHIRYCELTEFRQRVAESL 180 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE LQ G ++ IAE LG+S HTV+ KLD +R A + + G + Sbjct: 181 SPREVEILQWIARGKSNSVIAEILGISRHTVDTITRRIFEKLDVNDRTTAAIRGLGSGLV 240 >gi|108797570|ref|YP_637767.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119866657|ref|YP_936609.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|126433193|ref|YP_001068884.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|108767989|gb|ABG06711.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119692746|gb|ABL89819.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] gi|126232993|gb|ABN96393.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 215 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I D+L + LT RE L+L +GY++ EIA L +S TV+ + Sbjct: 129 GAVTALIRDYLHRARSGDELPDTILTPREEEVLKLVAEGYSTREIAATLSISAKTVDRHR 188 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R+ AIR G I Sbjct: 189 ANILAKLGLRDRLALTRYAIRAGLI 213 >gi|332533470|ref|ZP_08409333.1| nitrate/nitrite response regulator protein [Pseudoalteromonas haloplanktis ANT/505] gi|332037017|gb|EGI73475.1| nitrate/nitrite response regulator protein [Pseudoalteromonas haloplanktis ANT/505] Length = 218 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 45/99 (45%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + + L +++ A Q D L + LT+RE + + L G Sbjct: 111 GIRLLLEDQLWYRRDIMCNALNRMLQFNKDALHKLTEGDIEPVKLTKREKAIISLMSKGS 170 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 ++EIAE L +S HTV +L SA K NRI+ ++ A Sbjct: 171 KNKEIAEDLSISPHTVKTHLYSAFRKTKCRNRIELLSWA 209 >gi|319948162|ref|ZP_08022323.1| transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] gi|319438174|gb|EFV93133.1| transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] Length = 294 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 6/82 (7%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 C ++++ E+ R L+ RE L G T+ E A +G+ TV +YL S Sbjct: 218 CAEMVSPPPEMPTAR------LSRRELDVLACVAQGKTNIETAADMGIGAETVKSYLRSV 271 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KLDA R +A+ A R G + Sbjct: 272 MRKLDAHTRFEAVNAARRMGAL 293 >gi|282864856|ref|ZP_06273910.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560281|gb|EFB65829.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 282 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L G T+ AE+LGL TV AYL S+ KL A R++A+ A R G Sbjct: 220 RLAPREVDVLACVASGATNAVAAERLGLRPETVKAYLRSSMRKLGAHTRLEAVVAARRAG 279 Query: 233 YI 234 + Sbjct: 280 LL 281 >gi|228998002|ref|ZP_04157603.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|229005552|ref|ZP_04163264.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228755739|gb|EEM05072.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228761735|gb|EEM10680.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] Length = 96 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 10/92 (10%) Query: 144 EVIIEAH-GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 E++I+ + G CY F LT+ E LQL GY +EIA L S Sbjct: 7 EILIKINEGICY---------FPMSMDYVEELTDSEKQILQLLCGGYKRKEIATMLYASE 57 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T++ ++ KLD + ++A+ K I+ GYI Sbjct: 58 RTISNHIQHIFDKLDVSSSLEAVTKGIQLGYI 89 >gi|66045102|ref|YP_234943.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63255809|gb|AAY36905.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 240 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 175 CSRGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEAL 234 Query: 230 RFGYI 234 G I Sbjct: 235 CRGLI 239 >gi|127514122|ref|YP_001095319.1| LuxR family transcriptional regulator [Shewanella loihica PV-4] gi|126639417|gb|ABO25060.1| transcriptional regulator, LuxR family [Shewanella loihica PV-4] Length = 220 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 38/63 (60%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +EL + + + LT RE + +QL G ++EIA++L +S HTV A++ S K + N Sbjct: 143 VELTQDMVAMLQKLTTRERTIIQLVSSGARNKEIADRLCISEHTVKAHISSIFRKTQSRN 202 Query: 221 RIQ 223 R++ Sbjct: 203 RVE 205 >gi|298248902|ref|ZP_06972706.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546906|gb|EFH80773.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G S+EI +LG++ TV +YL S KL+ +R A+A AI G Sbjct: 157 QLTEREQEVLAGIAAGERSKEIGARLGITRRTVESYLNSIYTKLNVDSRAAAVAVAIERG 216 Query: 233 YI 234 + Sbjct: 217 LL 218 >gi|254819425|ref|ZP_05224426.1| two-component system response regulator [Mycobacterium intracellulare ATCC 13950] Length = 218 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 8/114 (7%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK-----RSSAARNLTERETSC 181 G+V+ S L V A G Y V + L ++K R +A LT RE Sbjct: 103 GFVLKDSSAEELIRAVRAVARGDSYLDPAVTSRVLTTYRKAAPGPRGAAIAELTTRELDV 162 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L G G ++ EIA KL +S TV +++G KLD +R AI A G + Sbjct: 163 LTLIGQGLSNTEIAGKLCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA 216 >gi|226366040|ref|YP_002783823.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226244530|dbj|BAH54878.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 287 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G T+ E A++L + TV +YL SA KLDA +R +A+ A R G Sbjct: 225 RLTPREIDVLSHVALGCTNGEAAQRLSVGPETVKSYLRSAMSKLDARSRHEAVVTARRLG 284 Query: 233 YI 234 + Sbjct: 285 LL 286 >gi|148242300|ref|YP_001227457.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147850610|emb|CAK28104.1| Possible two-component system response regulator [Synechococcus sp. RCC307] Length = 228 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G + EIAEKL +S T Y L+ NR+QA+ K +R G Sbjct: 166 LTPREYEVLDLLASGLSDREIAEKLIVSEETSRTYTKRLLRTLEVNNRVQAVLKGMRCGM 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|71906325|ref|YP_283912.1| two component LuxR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71845946|gb|AAZ45442.1| two component transcriptional regulator, LuxR family [Dechloromonas aromatica RCB] Length = 203 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 11/76 (14%) Query: 163 LFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L + R SA+ LT RE + L GY + EIAEKLG+SV TV + K Sbjct: 127 LMQDRKSASEKANYLLGQLTPREQEVMNLVVGGYHNREIAEKLGISVRTVEVHKAHVMSK 186 Query: 216 LDAVNRIQAIAKAIRF 231 LD + ++A +R Sbjct: 187 LD----VDSVADLVRL 198 >gi|114045833|ref|YP_736383.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-7] gi|113887275|gb|ABI41326.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 198 Score = 43.1 bits (100), Expect = 0.032, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L ++E L+ A +G ++ EIAE L ++ TV YL A KL+A NRI A A + G+ Sbjct: 138 LNDKERRALRFASEGKSTAEIAEMLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGW 197 Query: 234 I 234 + Sbjct: 198 L 198 >gi|319951571|ref|ZP_08025372.1| regulatory protein, LuxR [Dietzia cinnamea P4] gi|319434774|gb|EFV90093.1| regulatory protein, LuxR [Dietzia cinnamea P4] Length = 205 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L G ++E+IAE+ LS++TV Y+ SA K+D R QA+A I G Sbjct: 142 LSHREAEVVSLIVQGLSNEQIAEQCYLSLNTVKTYVRSAYRKMDVATRAQAVAWGIGNG 200 >gi|307326596|ref|ZP_07605790.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887790|gb|EFN18782.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 201 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L LA DG EIA + LS TV YL +A +L A NR A A R G+ Sbjct: 141 LTPREAEMLSLAEDGAPVAEIASRAALSPGTVRNYLSAAAAELGAENRHVAARVARRHGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|256375752|ref|YP_003099412.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920055|gb|ACU35566.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 214 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L DG + IA +LGLS TV +Y+ + +KL NR+QA A + G Sbjct: 153 LSTRERQVLELLSDGLPNAAIATELGLSEATVKSYVSTVLMKLGVENRVQAALAAHQVG 211 >gi|212640042|ref|YP_002316562.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212561522|gb|ACJ34577.1| DNA-binding response regulator, NarL family, with truncated N-terminal REC domain [Anoxybacillus flavithermus WK1] Length = 165 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L + E LQ+ + +T+ +I+EKL +S TV +L S KL A +R AIA A+R Sbjct: 103 KLNDTEIRILQMVSNDFTNRQISEKLNISKRTVERHLSSCFEKLGAHSRAGAIAAAMRLK 162 Query: 233 YI 234 I Sbjct: 163 LI 164 >gi|261410000|ref|YP_003246241.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286463|gb|ACX68434.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 201 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L +G T+ +I++ L L+ TV YL SA KL+A +R QA+ A G+ Sbjct: 141 LSEREIEMLRLTKEGMTTGDISKALFLTRGTVRNYLSSAIQKLEADSRQQAVTIAEDKGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|167463570|ref|ZP_02328659.1| hypothetical protein Plarl_13624 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381266|ref|ZP_08055269.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154842|gb|EFX47113.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 218 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%) Query: 150 HGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 H A +VI +L+ + A + LT+RE L L GYT++E+A+ L +S TV + Sbjct: 129 HAAAKKVIEGYLQSASHDHTDAFQQLTDREKEILSLVAKGYTNKEVADLLSISAKTVENH 188 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ R I A++ G + Sbjct: 189 KANIMDKLNLNTRRDLIRFAVKRGLL 214 >gi|83952296|ref|ZP_00961028.1| putative nitrate/nitrite response regulator protein [Roseovarius nubinhibens ISM] gi|83837302|gb|EAP76599.1| putative nitrate/nitrite response regulator protein [Roseovarius nubinhibens ISM] Length = 232 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 30/51 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L A G ++ IA+KLGLSVHTV ++ KL NR +A Sbjct: 168 LTDREFEVLSCAAQGNQNKIIADKLGLSVHTVKLHMHHVIAKLGVHNRTEA 218 >gi|113971949|ref|YP_735742.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-4] gi|117922250|ref|YP_871442.1| two component LuxR family transcriptional regulator [Shewanella sp. ANA-3] gi|113886633|gb|ABI40685.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-4] gi|117614582|gb|ABK50036.1| two component transcriptional regulator, LuxR family [Shewanella sp. ANA-3] Length = 198 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L ++E L+ A +G ++ EIAE L ++ TV YL A KL+A NRI A A + G+ Sbjct: 138 LNDKERRALRFASEGKSTAEIAEMLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGW 197 Query: 234 I 234 + Sbjct: 198 L 198 >gi|300932450|ref|ZP_07147706.1| LuxR family transcriptional regulator [Corynebacterium resistens DSM 45100] Length = 282 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 1/99 (1%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S+ MLAN V E +V+ D + + R L+ RE L G+T+ E A Sbjct: 184 SKLRMLANRVEDETLRRDLEVLCDQM-VSPVRVKQTTKLSARELDVLACVALGHTNVEAA 242 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++G+ TV +YL S KL A R +A+ A R G + Sbjct: 243 AEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 281 >gi|298252028|ref|ZP_06975831.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546620|gb|EFH80488.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1079 Score = 43.1 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G ++++IA L + + TV ++GS KL A +R QA+ KA F Sbjct: 1019 LTRRELEVLRLLAEGASNQQIAAVLVIQLSTVKKHVGSLLAKLGAESRTQALVKARAFSL 1078 Query: 234 I 234 + Sbjct: 1079 L 1079 >gi|291612623|ref|YP_003522780.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291582735|gb|ADE10393.1| two component transcriptional regulator, LuxR family [Sideroxydans lithotrophicus ES-1] Length = 215 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G + EIA+ L +S HT+ A++ S KLD +R +A +AIR G Sbjct: 153 LTAREEEVLTYIAKGLSRTEIAQLLSVSAHTIIAHVRSIYSKLDISSRAEATVEAIRRGL 212 Query: 234 IC 235 I Sbjct: 213 IS 214 >gi|229494461|ref|ZP_04388224.1| LuxR-family transcriptional regulator [Rhodococcus erythropolis SK121] gi|229318823|gb|EEN84681.1| LuxR-family transcriptional regulator [Rhodococcus erythropolis SK121] Length = 883 Score = 43.1 bits (100), Expect = 0.033, Method: Composition-based stats. Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 8/76 (10%) Query: 161 LELFKKRSSAAR--------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 L F KRS A LTERE L L G S +A+KL +SV+TV L + Sbjct: 802 LAEFSKRSPAESFPEFVHIVELTEREQKVLSLLALGMGSAAMADKLYVSVNTVKTQLRTL 861 Query: 213 TVKLDAVNRIQAIAKA 228 KLD NR +AI +A Sbjct: 862 YKKLDVHNRNEAITRA 877 >gi|254386360|ref|ZP_05001666.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194345211|gb|EDX26177.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 177 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE S L A +G + EIA L L+ TV Y+ + T K A NRI AI + R G+ Sbjct: 117 LSPRELSVLARAAEGDSIAEIARALHLASGTVRNYMAAVTRKTGARNRIDAIRISRRAGW 176 Query: 234 I 234 + Sbjct: 177 V 177 >gi|83310446|ref|YP_420710.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945287|dbj|BAE50151.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 209 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE LQL G+ + EIA++LG+++ TV + KLD N + A AIR G Sbjct: 147 SLTAREREVLQLIARGHKNREIADELGIAIKTVETHRTKIMQKLDLHNSAELAAYAIRRG 206 Query: 233 YI 234 I Sbjct: 207 LI 208 >gi|332296491|ref|YP_004438414.1| two component transcriptional regulator, LuxR family [Thermodesulfobium narugense DSM 14796] gi|332179594|gb|AEE15283.1| two component transcriptional regulator, LuxR family [Thermodesulfobium narugense DSM 14796] Length = 231 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A++ L+ RE L+L GY+++EIA+ L +S TV Y T KLD R + AI Sbjct: 150 ASKTLSSREDQVLRLLALGYSAKEIAQTLQISPKTVQTYRQRITTKLDLRRRSDIVRYAI 209 Query: 230 RFGYI 234 G + Sbjct: 210 SKGLL 214 >gi|291457497|ref|ZP_06596887.1| putative two-component system response regulator [Bifidobacterium breve DSM 20213] gi|291381332|gb|EFE88850.1| putative two-component system response regulator [Bifidobacterium breve DSM 20213] gi|295923855|gb|ADG63083.1| putative two-component system response regulator [Bifidobacterium breve] Length = 230 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 36/57 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ +E L++ DG T++EIAE+LG+SV TV + A KL A +R AI+ ++ Sbjct: 170 LSGKERDTLRMYADGSTTKEIAERLGISVATVATFERRALAKLGARSRAHAISICVK 226 >gi|220932886|ref|YP_002509794.1| regulatory protein LuxR [Halothermothrix orenii H 168] gi|219994196|gb|ACL70799.1| regulatory protein LuxR [Halothermothrix orenii H 168] Length = 887 Score = 43.1 bits (100), Expect = 0.033, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 6/85 (7%) Query: 157 ITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 IT LE F + S N L+ERE L L +G +++EIA+KL ++V T ++ Sbjct: 795 ITGILEAFDFKKSTFNNQNLIEPLSERELEILGLIVNGLSNKEIAKKLYITVGTTKWHIS 854 Query: 211 SATVKLDAVNRIQAIAKAIRFGYIC 235 + KL R QAI KA++ I Sbjct: 855 NIYGKLGVNKRAQAIKKALQLELIA 879 >gi|298244102|ref|ZP_06967908.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551583|gb|EFH85448.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 216 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 2/81 (2%) Query: 156 VITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++ D+L+ K + + +LTERE L+L +G+T+ +IAE+L +S TV+ + Sbjct: 134 MVGDYLQRSKTGEEKDSYSSLTEREREILKLVAEGFTNNQIAERLVISPKTVDTHRTHIM 193 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL+ +R + + A+R G + Sbjct: 194 DKLNLHSRAELVKYAMRRGLL 214 >gi|297154023|gb|ADI03735.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G +++EIAE++ LS TV A++ A KL+A +R Q + A R G Sbjct: 154 LTPREREMVALVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTG 212 >gi|75906884|ref|YP_321180.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700609|gb|ABA20285.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 239 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQL +G ++ IAE+L ++V TV ++ + KL A +R QA +A+R G Sbjct: 178 LTERELEVLQLIVEGCSNAVIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 237 Query: 234 I 234 + Sbjct: 238 V 238 >gi|21224676|ref|NP_630455.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|3367769|emb|CAA20094.1| putative two-component regulator [Streptomyces coelicolor A3(2)] Length = 222 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +LT+RE L G G+T+ EIA + LS TV ++G K+ A +RIQA+ Sbjct: 156 SLTDREREILVAVGKGWTNGEIAARFVLSESTVKTHVGRVLAKIGARDRIQAV 208 >gi|119717886|ref|YP_924851.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119538547|gb|ABL83164.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 215 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RE L L G ++EE+A +L LS++TV + + S KL+ +R QA+A + G Sbjct: 142 NLTPREQDVLGLIVAGCSNEELAAELYLSINTVKSLIRSVYRKLEVTSRAQAVAWGVDHG 201 Query: 233 Y 233 + Sbjct: 202 F 202 >gi|330940036|gb|EGH43227.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B] Length = 240 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 175 CSRGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEAL 234 Query: 230 RFGYI 234 G I Sbjct: 235 CRGLI 239 >gi|254426902|ref|ZP_05040609.1| transcriptional regulator, LuxR family protein [Alcanivorax sp. DG881] gi|196193071|gb|EDX88030.1| transcriptional regulator, LuxR family protein [Alcanivorax sp. DG881] Length = 216 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K S + +LT+RE L++ G + EIA L LS HT+ ++ + K++A NR+QA Sbjct: 149 KTFSRSEVSLTDREVEVLKVMATGAKNSEIASSLNLSPHTIKTHIYNIFKKINASNRLQA 208 Query: 225 IAKA 228 + A Sbjct: 209 VNWA 212 >gi|154492965|ref|ZP_02032591.1| hypothetical protein PARMER_02607 [Parabacteroides merdae ATCC 43184] gi|154087270|gb|EDN86315.1| hypothetical protein PARMER_02607 [Parabacteroides merdae ATCC 43184] Length = 130 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 36/63 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + L +RE L L G+ S+EIA KL LS++ VN + + L+ N I+AI +A Sbjct: 65 ADQQLIKREKEILLLIRQGFLSKEIAYKLNLSIYMVNNHRKNILATLNVDNVIEAINRAE 124 Query: 230 RFG 232 FG Sbjct: 125 SFG 127 >gi|308177129|ref|YP_003916535.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307744592|emb|CBT75564.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 222 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT RE L L G T+ EIA +L L+ TV ++ S +K++A NR+ A A R Sbjct: 158 RKLTAREHDVLALVGASLTNSEIAGRLFLTEATVKGHMTSIMLKINARNRVDAALIAYRA 217 Query: 232 GYI 234 G + Sbjct: 218 GIV 220 >gi|302559865|ref|ZP_07312207.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302477483|gb|EFL40576.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 228 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L + G G+T+ EIA +L L+ TV ++G K + +RIQA+ Sbjct: 165 LTEREREILTVVGRGWTNTEIATRLHLAESTVKTHVGRILAKTGSRDRIQAV 216 >gi|302542744|ref|ZP_07295086.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302460362|gb|EFL23455.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 201 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L + DG T+ E+A LGLS TV YL +A K A NR A+ A Sbjct: 138 ASPLTAREREVLGASADGSTNAELARALGLSQGTVRNYLSTAIQKTAARNRADAVRIARD 197 Query: 231 FGYI 234 G++ Sbjct: 198 KGWL 201 >gi|159036018|ref|YP_001535271.1| LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157914853|gb|ABV96280.1| transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 202 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 8/101 (7%) Query: 141 LANEVIIEAHGACYQVITDFLELFKK-------RSSAARNLTERETSCLQLAGDGYTSEE 193 LA V+ A G C + D L+ + SS L+ERE + L+L DG+ + E Sbjct: 103 LARTVLATADGDCILPL-DILDQLPEGGAGPLPASSTDPRLSERERAVLRLVADGHETGE 161 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA++L S TV + + T + NR A+A +R G + Sbjct: 162 IAKQLCYSSRTVTSVVHDITRRFRLRNRAHAVAYTLRAGLL 202 >gi|118471623|ref|YP_884743.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118172910|gb|ABK73806.1| transcriptional regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 395 Score = 43.1 bits (100), Expect = 0.034, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 37/57 (64%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE+ L+L G ++ EIAE+L ++ TV +++ K AVNR QAIA A++ Sbjct: 337 LTERESEVLRLMVTGASNHEIAEQLVITEGTVKSHVKHILRKYGAVNRAQAIAWALQ 393 >gi|290956373|ref|YP_003487555.1| response regulator [Streptomyces scabiei 87.22] gi|260645899|emb|CBG68990.1| putative response regulator [Streptomyces scabiei 87.22] Length = 299 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G T+ A++LGL TV AYL SA KL A R++A+ A R G Sbjct: 238 LTAREVDVLACVAMGATNAVAAQRLGLRPETVKAYLRSAMRKLGAHTRLEAVVAARRAGL 297 Query: 234 I 234 + Sbjct: 298 L 298 >gi|17229196|ref|NP_485744.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17135524|dbj|BAB78070.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 239 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQL +G ++ IAE+L ++V TV ++ + KL A +R QA +A+R G Sbjct: 178 LTERELEVLQLIVEGCSNAVIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 237 Query: 234 I 234 + Sbjct: 238 V 238 >gi|256786272|ref|ZP_05524703.1| response regulator [Streptomyces lividans TK24] gi|289770163|ref|ZP_06529541.1| response regulator [Streptomyces lividans TK24] gi|289700362|gb|EFD67791.1| response regulator [Streptomyces lividans TK24] Length = 233 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L+L +G + EIA KL S TV + T +L NR A+A A+R G Sbjct: 172 GLAPREVDVLRLVAEGLDTGEIAGKLSYSERTVKNVMHGLTTRLHLRNRAHAVAYALREG 231 Query: 233 YI 234 YI Sbjct: 232 YI 233 >gi|223937686|ref|ZP_03629588.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223893658|gb|EEF60117.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 454 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 11/89 (12%) Query: 150 HGA-----CYQVITDFLELF------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 HGA + I ++ + F +K + A NLT+RE L GY +EIA +L Sbjct: 362 HGALDSKEVFTQIKNYFQSFFGGESSEKENLAMANLTDRELKVLNCVSKGYLDKEIAHEL 421 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G+S+ TV+ +L + KL+ R +A K Sbjct: 422 GISLWTVHNHLKNTYEKLNVHTRTEAALK 450 >gi|71068204|gb|AAZ23059.1| probable putative response regulator [Streptomyces fradiae] Length = 227 Score = 43.1 bits (100), Expect = 0.035, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 8/82 (9%) Query: 162 ELFKKRSSAARN--------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 E K+R + AR LT RET L L G +++EIA +L L+ TV ++G Sbjct: 141 EFAKQRPATARGNPALRLNGLTPRETEVLGLIARGLSNQEIAGRLVLAEQTVKTHVGRVL 200 Query: 214 VKLDAVNRIQAIAKAIRFGYIC 235 KL +R QA+ A G + Sbjct: 201 AKLTLRDRAQAVVFAYESGLVA 222 >gi|329937029|ref|ZP_08286658.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329303636|gb|EGG47521.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 224 Score = 42.7 bits (99), Expect = 0.035, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I +FL+ + + + LT RE L+L +G++S+EIA+ L +S+ TV + Sbjct: 138 GAVTALIRNFLDRVRSGEEVSDSVLTPREEEVLKLIAEGHSSKEIADTLFISIKTVQRHR 197 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G + Sbjct: 198 ANLLHKLGLRDRLELTRYAIRAGLV 222 >gi|331696054|ref|YP_004332293.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326950743|gb|AEA24440.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 757 Score = 42.7 bits (99), Expect = 0.035, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ +S LT E +L +G+T+ IAE+L +SVHTV +L A KLD R++ Sbjct: 684 ERATSGWAALTASERRVARLVAEGHTNRAIAERLHVSVHTVGTHLRHAFTKLDINTRVE 742 >gi|324324220|gb|ADY19480.1| two component LuxR family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 218 Score = 42.7 bits (99), Expect = 0.035, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 36/60 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 154 QLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 213 >gi|298250158|ref|ZP_06973962.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548162|gb|EFH82029.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1003 Score = 42.7 bits (99), Expect = 0.035, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S L++RE L L G+++ EIAE L + ++TV +L + KL NR QAIA+A Sbjct: 938 SLTEQLSQREQEVLHLLASGHSNAEIAETLIIGLNTVKTHLKNIYGKLGTHNRTQAIAQA 997 >gi|291287188|ref|YP_003504004.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] gi|290884348|gb|ADD68048.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] Length = 245 Score = 42.7 bits (99), Expect = 0.035, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%) Query: 152 ACY---QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ACY ++T+++ + + L+ RE S L G TS E+A+ L ++ +TVN + Sbjct: 159 ACYLHAHLLTNYVRILSVSNENIIKLSGREKSVLTWLKYGKTSWEVAKILNITENTVNFH 218 Query: 209 LGSATVKLDAVNRIQAIAKAI 229 + + KL+A NR A+A AI Sbjct: 219 IKNIKNKLNATNRQHAVAIAI 239 >gi|193890916|gb|ACF28617.1| quorum sensing regulator [Mesorhizobium tianshanense] Length = 275 Score = 42.7 bits (99), Expect = 0.035, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE CL+ +G T E LGLS HTV YL SA KL A + A + A + G Sbjct: 210 RLSPRELECLRWTSEGKTVWECGVILGLSPHTVRCYLESARHKLGASSNTHAASLATKSG 269 Query: 233 YI 234 + Sbjct: 270 LL 271 >gi|91794445|ref|YP_564096.1| regulatory protein, LuxR [Shewanella denitrificans OS217] gi|91716447|gb|ABE56373.1| transcriptional regulator, LuxR family [Shewanella denitrificans OS217] Length = 222 Score = 42.7 bits (99), Expect = 0.035, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 31/50 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + +QL G ++EIA +L +S HTV A+L S K + NR++ Sbjct: 157 LTNRERTIIQLVSSGARNKEIAHRLCISEHTVKAHLSSVFRKTQSRNRVE 206 >gi|55821328|ref|YP_139770.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55823240|ref|YP_141681.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55737313|gb|AAV60955.1| response regulator (homolog to RR11 Spn) [Streptococcus thermophilus LMG 18311] gi|55739225|gb|AAV62866.1| response regulator (homolog to RR11 Spn) [Streptococcus thermophilus CNRZ1066] Length = 200 Score = 42.7 bits (99), Expect = 0.035, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L++RE L + G T++EIAE L LS TV Y+ + KLDA NR A+ Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTDAV 190 >gi|320547873|ref|ZP_08042156.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320447413|gb|EFW88173.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 214 Score = 42.7 bits (99), Expect = 0.035, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 2/104 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS + N + A G A + ++ ++ +LT RE L+L Sbjct: 102 KGYMLKTSSAAEILNAIHKVARGDLAIETEVDKKIKAHDQKPELHEDLTARERDILKLLA 161 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 162 KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFK 205 >gi|302540506|ref|ZP_07292848.1| putative regulatory protein [Streptomyces hygroscopicus ATCC 53653] gi|302458124|gb|EFL21217.1| putative regulatory protein [Streptomyces himastatinicus ATCC 53653] Length = 352 Score = 42.7 bits (99), Expect = 0.035, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE++ + L++ G E++A LG+S+ TV+ + +LDA +R +A +A R G Sbjct: 291 LTEQQRAALRMLASGMKDEKVARNLGVSLRTVSRMISDLMQELDASSRFEAGVRATRLGL 350 Query: 234 I 234 + Sbjct: 351 L 351 >gi|294625489|ref|ZP_06704118.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665263|ref|ZP_06730559.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600210|gb|EFF44318.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604978|gb|EFF48333.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 210 Score = 42.7 bits (99), Expect = 0.035, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F+ + + +ERE + L+L GY+++EIA L L+ TV Y+ + KL +R + Sbjct: 140 FRDQQAPRETFSEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTR 199 Query: 224 AIAKAIRFGYI 234 A+ KAI I Sbjct: 200 AVLKAITLRVI 210 >gi|269793999|ref|YP_003313454.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096184|gb|ACZ20620.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 200 Score = 42.7 bits (99), Expect = 0.035, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE+ L+L +G ++ IA+ LGL+ TV +L +A K+ A +R+ A A A G+ Sbjct: 140 LTARESDVLRLTREGLPTKHIAKTLGLAHGTVRNHLSAAMAKVHADSRVAAAATAHERGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|198277378|ref|ZP_03209909.1| hypothetical protein BACPLE_03590 [Bacteroides plebeius DSM 17135] gi|198269876|gb|EDY94146.1| hypothetical protein BACPLE_03590 [Bacteroides plebeius DSM 17135] Length = 215 Score = 42.7 bits (99), Expect = 0.035, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQ G+ + EIAE L +S +T+ + S KL+A N + + KAI G Sbjct: 149 QLTLREMEVLQAIAKGFNTREIAELLHVSNNTIETHRKSLMSKLEARNAVDLVLKAINLG 208 Query: 233 YI 234 I Sbjct: 209 II 210 >gi|170751099|ref|YP_001757359.1| two component LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657621|gb|ACB26676.1| two component transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 196 Score = 42.7 bits (99), Expect = 0.035, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L A G TS EIA L L TVN + A +L+ VNR A+A+A+ Sbjct: 134 HLTGREREVLTWASRGKTSAEIALILDLRERTVNFHFDQAMKRLNVVNRTHAVARALSLR 193 Query: 233 YI 234 I Sbjct: 194 LI 195 >gi|111024873|ref|YP_707293.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110823852|gb|ABG99135.1| probable transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 287 Score = 42.7 bits (99), Expect = 0.035, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 5/80 (6%) Query: 157 ITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++D + ++ S+A R LT RE L G T+ EIA++L + TV +YL + Sbjct: 204 LSDRIAALRQPSNATRPGREMQLTPREIDVLAHVALGCTNSEIAQRLSVGPQTVKSYLRA 263 Query: 212 ATVKLDAVNRIQAIAKAIRF 231 A KL A +R +A+ A +F Sbjct: 264 AMNKLSACSRQEAVVTARKF 283 >gi|269926246|ref|YP_003322869.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789906|gb|ACZ42047.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 214 Score = 42.7 bits (99), Expect = 0.036, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE LQ +G + +EIA + ++V T + + + KLD +R+QA+ A+R G Sbjct: 152 LTDREREILQAIAEGLSDKEIAARFNITVDTAHKHANNILRKLDTNSRLQAVLFALRHGA 211 Query: 234 I 234 I Sbjct: 212 I 212 >gi|149200778|ref|ZP_01877753.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] gi|149145111|gb|EDM33137.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] Length = 202 Score = 42.7 bits (99), Expect = 0.036, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ +LTE+E L+LA DG T++EIA +G + T+ ++ S KL+A NR A Sbjct: 135 KAGPEHDLTEKELFVLRLAADGLTNKEIARDMGTNEVTIKMHMRSICKKLNARNRAHA 192 >gi|89056006|ref|YP_511457.1| two component LuxR family transcriptional regulator [Jannaschia sp. CCS1] gi|88865555|gb|ABD56432.1| two component transcriptional regulator, LuxR family [Jannaschia sp. CCS1] Length = 214 Score = 42.7 bits (99), Expect = 0.036, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RET L+ GY EIA +LG+S TV ++ S KL+ + I+A+A A R Sbjct: 151 APALTNRETEILRSVSRGYKRHEIAAQLGISAGTVGNHITSIYRKLEVSSNIEAVAIASR 210 Query: 231 FGYI 234 G + Sbjct: 211 SGML 214 >gi|271967187|ref|YP_003341383.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510362|gb|ACZ88640.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 227 Score = 42.7 bits (99), Expect = 0.036, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L +S TV ++G+ KL +R+QA+ A G Sbjct: 160 RLTEREMEVLRLIARGMSNAEIAAELVVSETTVKTHVGNVLTKLGLRDRVQAVVLAYETG 219 Query: 233 YIC 235 I Sbjct: 220 LIT 222 >gi|228475083|ref|ZP_04059811.1| two-component response regulator [Staphylococcus hominis SK119] gi|314936522|ref|ZP_07843869.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] gi|228271068|gb|EEK12456.1| two-component response regulator [Staphylococcus hominis SK119] gi|313655141|gb|EFS18886.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] Length = 200 Score = 42.7 bits (99), Expect = 0.036, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+ +S+EIAEKL LS TV Y + KL+A NR A +A G+ Sbjct: 140 LTHKEQVVLREIGNNLSSKEIAEKLYLSDGTVRNYTSNIIDKLNADNRFNAWKQAKEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|218902648|ref|YP_002450482.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218535833|gb|ACK88231.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 210 Score = 42.7 bits (99), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 140 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199 Query: 225 IAKAIR 230 + A R Sbjct: 200 VIYAFR 205 >gi|30261536|ref|NP_843913.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42780637|ref|NP_977884.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47526732|ref|YP_018081.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184365|ref|YP_027617.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481072|ref|YP_035656.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65318804|ref|ZP_00391763.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|118476998|ref|YP_894149.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|163939354|ref|YP_001644238.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|165872654|ref|ZP_02217284.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634292|ref|ZP_02392613.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641615|ref|ZP_02399861.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170706386|ref|ZP_02896847.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651401|ref|ZP_02934190.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568032|ref|ZP_03020942.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036887|ref|ZP_03104273.1| DNA-binding response regulator [Bacillus cereus W] gi|196047716|ref|ZP_03114919.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206978391|ref|ZP_03239262.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217959016|ref|YP_002337564.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222095172|ref|YP_002529232.1| DNA-binding response regulator [Bacillus cereus Q1] gi|225863403|ref|YP_002748781.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227815714|ref|YP_002815723.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229599953|ref|YP_002865949.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254682399|ref|ZP_05146260.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254721216|ref|ZP_05183006.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254733815|ref|ZP_05191529.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740493|ref|ZP_05198184.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753884|ref|ZP_05205919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254758979|ref|ZP_05211006.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|300118514|ref|ZP_07056253.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|301053077|ref|YP_003791288.1| response regulator [Bacillus anthracis CI] gi|30255390|gb|AAP25399.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42736557|gb|AAS40492.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47501880|gb|AAT30556.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178292|gb|AAT53668.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49332628|gb|AAT63274.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118416223|gb|ABK84642.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|163861551|gb|ABY42610.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] gi|164711598|gb|EDR17145.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510408|gb|EDR85808.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530180|gb|EDR92906.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128920|gb|EDS97786.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172082679|gb|EDT67742.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560766|gb|EDV14741.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195990509|gb|EDX54491.1| DNA-binding response regulator [Bacillus cereus W] gi|196021466|gb|EDX60170.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206743396|gb|EDZ54832.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065203|gb|ACJ79453.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221239230|gb|ACM11940.1| DNA-binding response regulator [Bacillus cereus Q1] gi|225787204|gb|ACO27421.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227006221|gb|ACP15964.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229264361|gb|ACQ45998.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|298724038|gb|EFI64741.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|300375246|gb|ADK04150.1| response regulator [Bacillus cereus biovar anthracis str. CI] gi|324325555|gb|ADY20815.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 210 Score = 42.7 bits (99), Expect = 0.036, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 140 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199 Query: 225 IAKAIR 230 + A R Sbjct: 200 VIYAFR 205 >gi|295695123|ref|YP_003588361.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295410725|gb|ADG05217.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 216 Score = 42.7 bits (99), Expect = 0.036, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A+ LT RE L L G ++ EIA+ L +S +TV +L + KLD NR Q A Sbjct: 147 AEVAKRLTPREREILGLIARGRSNREIAQALTISENTVKNHLKNIMAKLDVKNRAQLAAL 206 Query: 228 AIR 230 A+R Sbjct: 207 AVR 209 >gi|302532669|ref|ZP_07285011.1| two component system response regulator [Streptomyces sp. C] gi|302441564|gb|EFL13380.1| two component system response regulator [Streptomyces sp. C] Length = 191 Score = 42.7 bits (99), Expect = 0.036, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 9/115 (7%) Query: 129 NGYVIFTSEF--LMLANEVIIE-----AHGACYQVITDFLELFKKRSSAA--RNLTERET 179 +G+++ +E L+ A ++E + G ++I +F ++ + A LT+RE Sbjct: 71 SGFLVKDTEPEELLRAVRAVVEGDALLSPGVTRRLIAEFAARSRRPAPAEGLERLTDRER 130 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L G G ++EEIA +L +S T ++ VKL A +R Q + A G + Sbjct: 131 EVMALVGTGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYETGLV 185 >gi|70728347|ref|YP_258096.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68342646|gb|AAY90252.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 848 Score = 42.7 bits (99), Expect = 0.036, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G ++++IAE+L +S+HTV + KL R QA+AKA G Sbjct: 787 LSLRELQVLQLIAQGCSNQQIAEQLFISLHTVKTHGRRIHSKLGVERRTQAVAKAQALGL 846 Query: 234 I 234 + Sbjct: 847 M 847 >gi|41410415|ref|NP_963251.1| hypothetical protein MAP4317c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41399249|gb|AAS06867.1| hypothetical protein MAP_4317c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 218 Score = 42.7 bits (99), Expect = 0.036, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 8/114 (7%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK-----RSSAARNLTERETSC 181 G+V+ S L V A G Y V + L ++K R +A LT RE Sbjct: 103 GFVLKDSSAEELIRAVRAVARGEGYLDPAVTSRVLTTYRKAAPGPRGAAIAELTTRERDV 162 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L G G ++ EIA++L +S TV +++G KLD +R AI A G + Sbjct: 163 LTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA 216 >gi|229588468|ref|YP_002870587.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229360334|emb|CAY47191.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 909 Score = 42.7 bits (99), Expect = 0.037, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A L+ RE + L+L G +++EI+ +L +S+HTV + KL R QA+A+ Sbjct: 842 APAHETLSARELAVLKLIAQGCSNQEISNQLFISLHTVKTHASHINSKLGVERRTQAVAR 901 Query: 228 AIRFGYI 234 A G + Sbjct: 902 AKAMGLL 908 >gi|220929282|ref|YP_002506191.1| LuxR family transcriptional regulator [Clostridium cellulolyticum H10] gi|219999610|gb|ACL76211.1| two component transcriptional regulator, LuxR family [Clostridium cellulolyticum H10] Length = 216 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L+++ S NLT RE L+L +G ++EIA+ L +S TV ++ + KLD +R Sbjct: 144 LYEQDKSIINNLTNREVEVLKLIAEGMINKEIAKALYISEKTVKNHISNIFKKLDVNDRT 203 Query: 223 QA 224 QA Sbjct: 204 QA 205 >gi|170689229|ref|ZP_02880425.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170666784|gb|EDT17551.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 210 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 140 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199 Query: 225 IAKAIR 230 + A R Sbjct: 200 VIYAFR 205 >gi|77404773|ref|YP_345346.1| two component LuxR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77390423|gb|ABA81605.1| two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides 2.4.1] Length = 240 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 32/50 (64%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L L G G T++EIA+KLGL+ T+ ++ + +K +A NR Q Sbjct: 141 LTRREREVLNLIGAGKTNKEIAQKLGLAEVTIKMHVRALCLKFEARNRTQ 190 >gi|330879892|gb|EGH14041.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 240 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 175 CSRGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEAL 234 Query: 230 RFGYI 234 G I Sbjct: 235 CRGLI 239 >gi|326772328|ref|ZP_08231613.1| two-component system response regulator [Actinomyces viscosus C505] gi|326638461|gb|EGE39362.1| two-component system response regulator [Actinomyces viscosus C505] Length = 240 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G ++ EIA L +S TV ++G+ KLD +R+QA+ A G Sbjct: 178 SLTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETG 237 Query: 233 YIC 235 + Sbjct: 238 LMA 240 >gi|298246648|ref|ZP_06970453.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549307|gb|EFH83173.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 920 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L L +G +++ IAE+L +S+ TV ++GS +KL A NR A+A A Sbjct: 860 LTPREQEVLYLLAEGASNQVIAERLVVSLTTVKKHVGSLFLKLAADNRTHAVALA 914 >gi|326777253|ref|ZP_08236518.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326657586|gb|EGE42432.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 195 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + A LT++E L+LA DG S EIA +L LSV TV L SA KL A + A+ A Sbjct: 130 AGAGPLTDKEAEALRLAADGAHSREIAAELFLSVGTVRNRLSSAVGKLHARTLVDAVRIA 189 Query: 229 IRFGYI 234 G++ Sbjct: 190 RDQGWV 195 >gi|320012366|gb|ADW07216.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 225 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%) Query: 165 KKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + R +A R L TERE + DG + +IAE+L ++V TV A+ GS KL NR Sbjct: 154 RHREAARRRLSVLTERERETARAIADGLGNPQIAERLRITVATVKAHTGSLFAKLAVENR 213 Query: 222 IQ 223 +Q Sbjct: 214 VQ 215 >gi|302538489|ref|ZP_07290831.1| two component system response regulator [Streptomyces sp. C] gi|302447384|gb|EFL19200.1| two component system response regulator [Streptomyces sp. C] Length = 226 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L GDG +++EIA +LG+ TV ++G+ K + +R+QA A R G Sbjct: 164 RLTGRERDVLAALGDGLSNQEIAARLGIGTGTVKTHVGAILDKTGSASRVQAALLAHRTG 223 Query: 233 Y 233 Sbjct: 224 L 224 >gi|271968550|ref|YP_003342746.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270511725|gb|ACZ90003.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 201 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA G S EIA++L LSV TV ++ K A NR+ A+ A G+ Sbjct: 141 LTRRELDVLRLAAQGARSNEIADQLFLSVGTVRNHMSRIMCKTHARNRLDAVRIASDSGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|159897239|ref|YP_001543486.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890278|gb|ABX03358.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 240 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 10/100 (10%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARN----------LTERETSCLQLAGDGYTSEEI 194 VI E+ + V T L F++ S+ A N LT RE L G +++EI Sbjct: 126 VINESVMSKPHVATRVLNQFRELSNVANNSEDTSSMFAPLTSREIEILDCIARGLSNKEI 185 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +L +S TV ++ S KL +R A+ AI+ G+I Sbjct: 186 ANQLSISGQTVKNHITSILSKLQVNDRTMAVIHAIQQGWI 225 >gi|320532198|ref|ZP_08033064.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135576|gb|EFW27658.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 245 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G ++ EIA L +S TV ++G+ KLD +R+QA+ A G Sbjct: 183 SLTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLTKLDVRDRVQAVVVAYETG 242 Query: 233 YIC 235 + Sbjct: 243 LMA 245 >gi|298486382|ref|ZP_07004444.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159110|gb|EFI00169.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 238 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 173 CSRGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEAL 232 Query: 230 RFGYI 234 G I Sbjct: 233 CRGLI 237 >gi|297194274|ref|ZP_06911672.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152196|gb|EDY64473.2| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 256 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 6/74 (8%) Query: 168 SSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +SAAR LTERE + L+L G ++ EIA +L + TV ++ + KL A +R Sbjct: 181 NSAARTAMERAALTEREAAVLRLMARGLSNSEIAAQLFVGTETVKTHVSAVLAKLGARDR 240 Query: 222 IQAIAKAIRFGYIC 235 QA+ A G++ Sbjct: 241 TQAVIAAYESGFVA 254 >gi|302529845|ref|ZP_07282187.1| hypothetical protein SSMG_06227 [Streptomyces sp. AA4] gi|302438740|gb|EFL10556.1| hypothetical protein SSMG_06227 [Streptomyces sp. AA4] Length = 170 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 7/101 (6%) Query: 141 LANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 LA V+ AHG A ++ R + + LT+RE L+L +G + E Sbjct: 70 LAAAVLTAAHGGAILPPAALGTPLSHVRRPTHPRPTHSSGLTQREIDVLRLLAEGLDTAE 129 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AEK+ S V + + +LD NR A+A A+R G I Sbjct: 130 TAEKINFSERAVKKVIHDLSQRLDLRNRTHAVAYALRNGAI 170 >gi|229172177|ref|ZP_04299742.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3] gi|228611520|gb|EEK68777.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3] Length = 207 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 137 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 196 Query: 225 IAKAIR 230 + A R Sbjct: 197 VIYAFR 202 >gi|218896470|ref|YP_002444881.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543325|gb|ACK95719.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 210 Score = 42.7 bits (99), Expect = 0.037, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 140 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199 Query: 225 IAKAIR 230 + A R Sbjct: 200 VIYAFR 205 >gi|289679671|ref|ZP_06500561.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5] Length = 160 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 95 CSRGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEAL 154 Query: 230 RFGYI 234 G I Sbjct: 155 CRGLI 159 >gi|259419174|ref|ZP_05743091.1| transcriptional regulator AhyR/asaR family [Silicibacter sp. TrichCH4B] gi|259345396|gb|EEW57250.1| transcriptional regulator AhyR/asaR family [Silicibacter sp. TrichCH4B] Length = 229 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE CL G ++++IA +L S V +L +A KL A NR A+A A R G+ Sbjct: 168 LTLREAECLSHTAAGLSAKQIAHELNRSESMVVKHLQAAASKLGARNRSHAVAIATRQGW 227 Query: 234 I 234 I Sbjct: 228 I 228 >gi|228925473|ref|ZP_04088567.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944022|ref|ZP_04106406.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815693|gb|EEM61930.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834218|gb|EEM79761.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 214 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 36/60 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 150 QLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 >gi|296269595|ref|YP_003652227.1| LuxR family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092382|gb|ADG88334.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 287 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L L G E+A +LGL TV +Y+ + KLD+ NR +A+ A R G Sbjct: 225 RLSPRELDVLSLVALGCPYAEVARRLGLRPETVKSYMRTTMRKLDSHNRHEAVVAARRLG 284 Query: 233 YI 234 + Sbjct: 285 LL 286 >gi|229028063|ref|ZP_04184215.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271] gi|228733301|gb|EEL84131.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271] Length = 214 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 36/60 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 150 QLTEREVEVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 >gi|284032205|ref|YP_003382136.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811498|gb|ADB33337.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 221 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + L G+G +++EIA +L LS T ++ A VKL +R Q + A + G Sbjct: 155 LTEREREIVALVGEGLSNDEIAARLVLSPATAKTHVSRAMVKLGVRDRAQLVVVAYQTGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|29826626|ref|NP_821260.1| erythropoiesis-stimulating protein [Streptomyces avermitilis MA-4680] gi|29603722|dbj|BAC67795.1| putative erythropoiesis-stimulating protein [Streptomyces avermitilis MA-4680] Length = 331 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 6/105 (5%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G V+ T + + A + E A Q + D + + + LT ++ + ++L +G+ Sbjct: 229 GAVVLTGQGTLTALHALFETTWAGAQPLGDTVPVDRH------GLTGQQATVVRLLAEGH 282 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T E IA++LG+S T +L+A +R +A +A++ G++ Sbjct: 283 TDETIAKRLGVSPRTARRIASELMERLEARSRFEAGVRAVQRGWL 327 >gi|289705344|ref|ZP_06501740.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557859|gb|EFD51154.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 230 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 39/70 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +++ +A +LT RE L L G + EIA +L LS TV ++G KL A +R+QA Sbjct: 159 EEQQAAVASLTPREREVLVLMAQGAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQA 218 Query: 225 IAKAIRFGYI 234 + A R G + Sbjct: 219 VLIAHRAGLV 228 >gi|152981487|ref|YP_001352450.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] gi|151281564|gb|ABR89974.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 213 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT R+ L+L DG + EIA++LG++ TV A++ + L +NR QA A R G Sbjct: 149 LTPRQMEVLRLMCDGLRNGEIADQLGMTEKTVKAHVSAVLSGLGVLNRTQATVVARRAGL 208 Query: 234 I 234 + Sbjct: 209 L 209 >gi|90420412|ref|ZP_01228319.1| two-component response regulator, possible glycerol metabolism activator [Aurantimonas manganoxydans SI85-9A1] gi|90335140|gb|EAS48893.1| two-component response regulator, possible glycerol metabolism activator [Aurantimonas manganoxydans SI85-9A1] Length = 227 Score = 42.7 bits (99), Expect = 0.038, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT ++T L + G G +++IA +LG+S T+ A++ + +KL +R QA+ + R Sbjct: 158 RTLTPQQTRVLTMLGRGLLNKQIAYELGISEATIKAHVSAVLLKLGVDSRTQAVIRLSRL 217 Query: 232 G 232 G Sbjct: 218 G 218 >gi|197344631|gb|ACH69663.1| LuxR family transcriptional regulator [uncultured bacterium] Length = 238 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE CL+ G ++ IA+ L +S TV YL A KL R+QA+A + FG Sbjct: 176 RLSPRELECLRWVAQGKSNTVIADILKISDDTVAFYLRGALRKLGVSTRMQAVALCVTFG 235 Query: 233 YI 234 I Sbjct: 236 LI 237 >gi|254421507|ref|ZP_05035225.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] gi|196188996|gb|EDX83960.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] Length = 101 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 41/67 (61%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA +L++RE ++L G T++EI+++L +S TV+ ++ + K A NR+ + A Sbjct: 21 SAQHDLSKRELEIVELVAAGLTNQEISQRLEISKRTVDNHVSNILSKTAAGNRVALVRWA 80 Query: 229 IRFGYIC 235 ++ G +C Sbjct: 81 LQSGKVC 87 >gi|220920881|ref|YP_002496182.1| two component LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945487|gb|ACL55879.1| two component transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 223 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE ++L G+T++E+A KLG++ +V Y AT KLD R + + A+ G+ Sbjct: 158 LTDREREVVRLIALGFTNKEVASKLGVTAKSVETYKMRATEKLDIRTRAKIVQYAMLQGW 217 >gi|297583325|ref|YP_003699105.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141782|gb|ADH98539.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 235 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ + K+ +R QA+ AI+ G+ Sbjct: 172 LTRRECEVLQLMTDGKSNRSIGEALYISEKTVKNHVSNILQKMGMNDRTQAVVDAIKNGW 231 Query: 234 I 234 + Sbjct: 232 V 232 >gi|15613614|ref|NP_241917.1| two-component response regulator [Bacillus halodurans C-125] gi|10173666|dbj|BAB04770.1| two-component response regulator [Bacillus halodurans C-125] Length = 212 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 37/57 (64%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE + ++L G+G +++EIA+ L LSV TV Y+ A KL+ +R Q A++ Sbjct: 152 LTKRELAVVKLVGEGKSNQEIADALFLSVGTVKNYISQALDKLELRDRTQLAIYAVK 208 >gi|302535348|ref|ZP_07287690.1| two-component system regulator [Streptomyces sp. C] gi|302444243|gb|EFL16059.1| two-component system regulator [Streptomyces sp. C] Length = 223 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 10/116 (8%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRS-SAAR--NLTERE 178 +G+++ + LA V + A G ++IT+F L R+ S AR LTERE Sbjct: 103 SGFLLKDASADQLAEAVRVVAAGEALLSPNITKRLITEFSRLGAPRAPSRARIEELTERE 162 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T L L G ++ EIA L ++ TV ++G VKL +R QA A G + Sbjct: 163 TEVLSLIAQGLSNGEIATHLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYETGLV 218 >gi|228912956|ref|ZP_04076601.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228983471|ref|ZP_04143682.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229119881|ref|ZP_04249141.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201] gi|228663628|gb|EEL19208.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201] gi|228776261|gb|EEM24616.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228846694|gb|EEM91701.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 214 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 36/60 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 150 QLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 >gi|118619050|ref|YP_907382.1| two component transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118571160|gb|ABL05911.1| two component transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 218 Score = 42.7 bits (99), Expect = 0.039, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 17/117 (14%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGAC-------------YQVITDFLELFKKRSSAARNLT 175 GY++ ++ LA+ V A G Y+ I + + R S LT Sbjct: 103 TGYLVKSASKAELADAVRATAAGRAVFTPSLAGLVLGEYRRIAQTADSSQDRPS----LT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ERET L+ G ++++IAEKL LS TV ++ + KL NR++ AI G Sbjct: 159 ERETEILRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQLANRVELTRYAIEHG 215 >gi|257484466|ref|ZP_05638507.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013268|gb|EGH93324.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 240 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 175 CSRGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEAL 234 Query: 230 RFGYI 234 G I Sbjct: 235 CRGLI 239 >gi|256789340|ref|ZP_05527771.1| two component system response regulator [Streptomyces lividans TK24] gi|289773226|ref|ZP_06532604.1| two component system response regulator [Streptomyces lividans TK24] gi|289703425|gb|EFD70854.1| two component system response regulator [Streptomyces lividans TK24] Length = 221 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Query: 149 AHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + G ++I +F K+ ++ LTERE + L G G ++EEIA +L +S T Sbjct: 128 SPGVTRRLIAEFAARSKEPAAPGEMARLTEREREVMALVGIGLSNEEIARRLVVSPLTAK 187 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ VKL A +R Q + A G + Sbjct: 188 THVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|228995587|ref|ZP_04155253.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17] gi|229003214|ref|ZP_04161054.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4] gi|228758053|gb|EEM07258.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4] gi|228764159|gb|EEM13040.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17] Length = 216 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 38/68 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA Sbjct: 144 QNQPKQVEQLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQA 203 Query: 225 IAKAIRFG 232 A+R+G Sbjct: 204 AIYAVRYG 211 >gi|254384266|ref|ZP_04999609.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194343154|gb|EDX24120.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 216 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + L+L G T+ EIA +L + TV +++ + KL A +R QA+ A G+ Sbjct: 153 LTEREEAVLRLMARGLTNVEIASELIVGTETVKSHVSAILAKLGARDRTQAVIMAYESGF 212 Query: 234 IC 235 + Sbjct: 213 VS 214 >gi|218248856|ref|YP_002374227.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061918|ref|YP_003139806.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218169334|gb|ACK68071.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256592084|gb|ACV02971.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 96 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L L G T+ EIAE+L +S TV+ ++ + K NR++ + A+++G Sbjct: 11 SLSGREIEILDLVATGLTNLEIAEELEISKRTVDNHISNILTKTKTENRVELVRWALQWG 70 Query: 233 YIC 235 IC Sbjct: 71 KIC 73 >gi|330897659|gb|EGH29078.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 240 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 175 CSRGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEAL 234 Query: 230 RFGYI 234 G I Sbjct: 235 CRGLI 239 >gi|320329504|gb|EFW85496.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330889863|gb|EGH22524.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] gi|330986211|gb|EGH84314.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 240 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 175 CSRGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEAL 234 Query: 230 RFGYI 234 G I Sbjct: 235 CRGLI 239 >gi|310644345|ref|YP_003949104.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309249296|gb|ADO58863.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 240 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G +++ I E L +S TV ++ S K++ +R QA+ +I++G+ Sbjct: 178 LTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYGW 237 Query: 234 IC 235 + Sbjct: 238 VT 239 >gi|297162250|gb|ADI11962.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 217 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G T+ EIA L + TV ++ + KL A +R QA+ A G+ Sbjct: 154 LTEREAEVLRLMARGLTNAEIAGHLVIGAETVKTHVSAVLAKLGARDRTQAVIAAYESGF 213 Query: 234 IC 235 + Sbjct: 214 VV 215 >gi|269958046|ref|YP_003327835.1| LuxR family transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306727|gb|ACZ32277.1| transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 970 Score = 42.7 bits (99), Expect = 0.040, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 38/69 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R + +LT+RE L L +G ++ +I E+L +S TV+ ++ + KL R +A+ Sbjct: 900 RRHESVASLTDREEEVLTLVAEGLSNRQIGERLYISTKTVSVHVSNVLAKLGVSGRTEAV 959 Query: 226 AKAIRFGYI 234 A R G + Sbjct: 960 DVAHRKGLL 968 >gi|290960916|ref|YP_003492098.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260650442|emb|CBG73558.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 210 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L + DG T +IA +L LS TV +L SA K NR++A+ +A + G+ Sbjct: 150 LTDRERDTLNASADGATVADIAARLHLSESTVRNHLSSAIGKTGTRNRMEAMREARQQGW 209 Query: 234 I 234 + Sbjct: 210 L 210 >gi|297560727|ref|YP_003679701.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845175|gb|ADH67195.1| transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 248 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE L L G ++EIA +L +S+H + KLD NR A+ KA+ Sbjct: 176 ATRLTERERQTLALMARGLENKEIAAQLRISLHGAKRNVAQVLTKLDCTNRTMAVVKAM- 234 Query: 231 FGYIC 235 G C Sbjct: 235 SGTAC 239 >gi|239918654|ref|YP_002958212.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839861|gb|ACS31658.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 230 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 39/70 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +++ +A +LT RE L L G + EIA +L LS TV ++G KL A +R+QA Sbjct: 159 EEQQAAVASLTPREREVLVLMAQGAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQA 218 Query: 225 IAKAIRFGYI 234 + A R G + Sbjct: 219 VLIAHRAGLV 228 >gi|169260111|gb|ACA51941.1| BovR [Streptococcus equinus] Length = 198 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G+G +EIA KL +S T+ ++ + KL+ + I+AI KA + GY Sbjct: 137 LTDREKEILVFLGEGNKRKEIASKLFISDRTLTNHIQNILEKLEVDSTIRAIIKARKMGY 196 Query: 234 I 234 I Sbjct: 197 I 197 >gi|254382255|ref|ZP_04997616.1| two component system DNA binding response regulator [Streptomyces sp. Mg1] gi|194341161|gb|EDX22127.1| two component system DNA binding response regulator [Streptomyces sp. Mg1] Length = 210 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 39/68 (57%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L L + + A LT+RE LQL DG ++++I+++L LS TV ++L KL + Sbjct: 134 LRLMDRMRTPAEALTKRELEVLQLVADGLSNQQISKELFLSQATVKSHLVHIYAKLGVDS 193 Query: 221 RIQAIAKA 228 R A+A A Sbjct: 194 RTSAVATA 201 >gi|71736138|ref|YP_274051.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556691|gb|AAZ35902.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 240 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 175 CSRGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEAL 234 Query: 230 RFGYI 234 G I Sbjct: 235 CRGLI 239 >gi|52143908|ref|YP_082920.1| response regulator [Bacillus cereus E33L] gi|51977377|gb|AAU18927.1| response regulator [Bacillus cereus E33L] Length = 210 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 140 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199 Query: 225 IAKAIR 230 + A R Sbjct: 200 VIYAFR 205 >gi|84496110|ref|ZP_00994964.1| two-component system response regulator [Janibacter sp. HTCC2649] gi|84382878|gb|EAP98759.1| two-component system response regulator [Janibacter sp. HTCC2649] Length = 201 Score = 42.7 bits (99), Expect = 0.040, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET LQ A DG + IA +L LS TV +L +A K A NR +A+ A G+ Sbjct: 141 LTQRETEVLQAARDGSSVAVIASRLFLSEGTVRNHLSAAIGKTQAANRAEAVLTAESNGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|182440739|ref|YP_001828458.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326781413|ref|ZP_08240678.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178469255|dbj|BAG23775.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326661746|gb|EGE46592.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 225 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE + DG + EIA++L +SV TV A+ GS KL NR+Q Sbjct: 166 LTEREHETARAIADGLGNPEIAQRLNISVATVKAHTGSLFSKLAVQNRVQ 215 >gi|197122287|ref|YP_002134238.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K] gi|220917070|ref|YP_002492374.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] gi|196172136|gb|ACG73109.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. K] gi|219954924|gb|ACL65308.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 218 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L+L +G +++E+A+ LG+SV T ++ KL NR + + AIR G Sbjct: 153 SLTDREKQVLKLVAEGRSNKEVADVLGISVKTAMSHREHVMEKLGVHNRTELVRFAIRKG 212 Query: 233 YI 234 I Sbjct: 213 VI 214 >gi|114571087|ref|YP_757767.1| two component LuxR family transcriptional regulator [Maricaulis maris MCS10] gi|114341549|gb|ABI66829.1| two component transcriptional regulator, LuxR family [Maricaulis maris MCS10] Length = 202 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + A L++ E L+LA G S IAE GL+ TV YL SA KL A NR Sbjct: 130 ELAARAWDEADPLSDAERRLLRLAEAGLDSNAIAEASGLARGTVRNYLHSAIGKLGATNR 189 Query: 222 IQAIAKAIRFGYI 234 I+A A + G++ Sbjct: 190 IEAARIARQKGWL 202 >gi|104783716|ref|YP_610214.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95112703|emb|CAK17431.1| putative transcriptional regulator, LuxR family [Pseudomonas entomophila L48] Length = 234 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S NL+ERE L+ + G T+ ++A L LS TVN ++ S K +A N+ AIA A Sbjct: 169 SPTPNLSERELEVLKWSAGGKTAADVATILSLSTSTVNFHIRSVINKTNAANKAGAIAVA 228 Query: 229 IRFGYI 234 G + Sbjct: 229 FLRGLL 234 >gi|86158419|ref|YP_465204.1| two component LuxR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774930|gb|ABC81767.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 218 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L+L +G +++E+A+ LG+SV T ++ KL NR + + AIR G Sbjct: 153 SLTDREKQVLKLVAEGRSNKEVADVLGISVKTAMSHREHVMEKLGVHNRTELVRFAIRKG 212 Query: 233 YI 234 I Sbjct: 213 VI 214 >gi|171778156|ref|ZP_02919413.1| hypothetical protein STRINF_00249 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283138|gb|EDT48562.1| hypothetical protein STRINF_00249 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 214 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 2/104 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS + N + A G A + ++ ++ +LT RE L+L Sbjct: 102 KGYMLKTSSAAEILNAIQKVARGELAIETEVDKKIKAHDQKPELHEDLTARERDILRLLA 161 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 162 KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFK 205 >gi|315645472|ref|ZP_07898596.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315278950|gb|EFU42260.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 200 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL + S N LTERE L L DG ++EIA +L ++ TV Y+ KL N Sbjct: 126 ELVDEAYSGEENPLTEREKEVLSLIADGKNTKEIATQLFITTGTVRNYISVILDKLGVSN 185 Query: 221 RIQAIAKAIRFGY 233 RI+AI + G+ Sbjct: 186 RIEAITRFKEKGW 198 >gi|308071115|ref|YP_003872720.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681] gi|305860394|gb|ADM72182.1| Transcriptional regulatory protein degU [Paenibacillus polymyxa E681] Length = 240 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G +++ I E L +S TV ++ S K++ +R QA+ +I++G+ Sbjct: 178 LTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYGW 237 Query: 234 IC 235 + Sbjct: 238 VT 239 >gi|306830765|ref|ZP_07463929.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427112|gb|EFM30220.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 198 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + L+++E LQL G T++EIA+ L LS TV Y+ S KL A NR Sbjct: 126 ELMETMMTQDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNR 185 Query: 222 IQAIAKAIRFGYI 234 ++A A G++ Sbjct: 186 VEATRIAEEHGWV 198 >gi|289626430|ref|ZP_06459384.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649584|ref|ZP_06480927.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330866354|gb|EGH01063.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 240 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 175 CSRGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEAL 234 Query: 230 RFGYI 234 G I Sbjct: 235 CRGLI 239 >gi|262204133|ref|YP_003275341.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087480|gb|ACY23448.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 216 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L+ G +S +IA +L +S TV ++G+ KL NR++ AI G Sbjct: 154 LTERETQVLREVAKGLSSRQIANRLAISPRTVENHVGATLRKLQLANRVELTRYAIEHG 212 >gi|228989393|ref|ZP_04149382.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM 12442] gi|228770340|gb|EEM18915.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM 12442] Length = 216 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 38/68 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA Sbjct: 144 QNQPKQVEQLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQA 203 Query: 225 IAKAIRFG 232 A+R+G Sbjct: 204 AIYAVRYG 211 >gi|182436631|ref|YP_001824350.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465147|dbj|BAG19667.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 200 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 28/66 (42%), Positives = 37/66 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + A LT++E L+LA DG S EIA +L LSV TV L SA KL A + A+ A Sbjct: 135 AGAGPLTDKEAEALRLAADGAHSREIAAELFLSVGTVRNRLSSAVGKLHARTLVDAVRIA 194 Query: 229 IRFGYI 234 G++ Sbjct: 195 RDQGWV 200 >gi|163801312|ref|ZP_02195211.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] gi|159174801|gb|EDP59601.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] Length = 217 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 26/57 (45%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RET L G ++ +IA+ L +S HTV ++L S KL+ NR+QAIA A R Sbjct: 158 LTRRETQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAIAWAKR 214 >gi|47567457|ref|ZP_00238169.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|47555859|gb|EAL14198.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] Length = 218 Score = 42.7 bits (99), Expect = 0.041, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 36/60 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 154 QLTEREVDILREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 213 >gi|326334307|ref|ZP_08200525.1| putative two-component response regulator [Nocardioidaceae bacterium Broad-1] gi|325947916|gb|EGD40038.1| putative two-component response regulator [Nocardioidaceae bacterium Broad-1] Length = 224 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 39/71 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E R AA LT RE L+L G ++EIA++L +S +T+ +++ A K+ R Sbjct: 125 EPPSDRQGAAAGLTVREIEVLKLITQGLPNQEIAKRLAMSGNTLKSHIRRAYRKIHVTTR 184 Query: 222 IQAIAKAIRFG 232 QA++ AI G Sbjct: 185 SQAVSWAIAHG 195 >gi|307326772|ref|ZP_07605964.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887535|gb|EFN18529.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 206 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 4/108 (3%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ LA V A G V ++ + R R L+ERET+ L+L Sbjct: 100 GYLLKDMARAELAEAVRSAARGETVLAPSVAARLMDQLRDRPERPR-LSERETAVLRLVA 158 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EI +L + TV +L A KL +R A+ A+R G + Sbjct: 159 QGCTNAEIGRRLFIGESTVKTHLLRAFGKLGVDDRTAAVTSAMRLGLL 206 >gi|256395358|ref|YP_003116922.1| TrmB family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361584|gb|ACU75081.1| transcriptional regulator, TrmB [Catenulispora acidiphila DSM 44928] Length = 335 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L++ E L + DG T E A++LG+S+ TV + +LDA +R +A KA R Sbjct: 272 ATGLSDTERILLTMLADGATDESAAKRLGVSLRTVRRIMADLMRRLDAGSRFEAGIKAAR 331 Query: 231 FGYI 234 G++ Sbjct: 332 RGWL 335 >gi|238061662|ref|ZP_04606371.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883473|gb|EEP72301.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 223 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 8/107 (7%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITD-FLELFKKRSSAA-------RNLTERETSCLQLA 185 + E+L+ A ++ IT +E F +R + LT RE L+L Sbjct: 109 VSPEYLVAAVRLVRSGDALLAPAITRRLVERFARRDTDTPAIHRDLSALTARELEVLRLL 168 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +G ++ E+AE+L LS TV +++ KL +R+QA+ A R G Sbjct: 169 AEGLSNAELAERLHLSEATVKSHVARILAKLGLRDRVQAVVVAYRTG 215 >gi|119492591|ref|ZP_01623809.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119453060|gb|EAW34230.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 211 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL+ RE L+L +G T+ +IAE+L LS +T+ ++ KL +R+QA A+R G Sbjct: 149 NLSPREFEVLKLMVEGKTNVKIAEELYLSPNTIKTHVRGIMNKLSVDDRVQAAVTALRLG 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|114706025|ref|ZP_01438928.1| two-component response regulator [Fulvimarina pelagi HTCC2506] gi|114538871|gb|EAU41992.1| two-component response regulator [Fulvimarina pelagi HTCC2506] Length = 223 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 10/114 (8%) Query: 129 NGYVIFTS--EFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR---NLTERETS 180 +GYV+ S E L+LA E I G Y + + ++ F++++ R +L+ RE Sbjct: 100 DGYVLKGSSLEELLLAVEDI--KAGKTYVSPSLSSKMIQSFRQKAETQRKRVDLSLREEQ 157 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ +G ++ IA +L +S TV Y+ KL+A NR++ + +A R G + Sbjct: 158 IIRFLSEGLPNKTIAIRLNISEKTVKHYMTGLIQKLEARNRLEVVMRAQRMGLL 211 >gi|319442313|ref|ZP_07991469.1| putative two component response regulator [Corynebacterium variabile DSM 44702] Length = 213 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 46/105 (43%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GY++ + L + V A GA + L + A LT RE LQL DG Sbjct: 109 GYLLKDAPPAELISAVRAAATGATAMSGSVATRLMHREEEPANALTSRELEVLQLVADGR 168 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EI L LS TV ++L KL +R A+A A G + Sbjct: 169 SNREIGATLFLSEATVKSHLVHINTKLGVRSRTSAVAAAREAGML 213 >gi|303242530|ref|ZP_07329009.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302589948|gb|EFL59717.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 214 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 37/65 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + S+A L ERE +QL DG ++ +IAE+L L+ +V + S KLD +R+Q Sbjct: 146 EESTALAKLNEREIKVIQLVVDGKSNNQIAEELFLTEGSVRNIVSSLLRKLDLKDRVQLA 205 Query: 226 AKAIR 230 A+R Sbjct: 206 VFAVR 210 >gi|297158406|gb|ADI08118.1| response regulator receiver protein [Streptomyces bingchenggensis BCW-1] Length = 202 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G + EIA ++ L+ TV YL + KL+A NR A+ A G+ Sbjct: 142 LTPREVEVLRLVAQGAEATEIAAQVHLTAGTVRNYLTAIVTKLNARNRTDAVRIATEAGW 201 Query: 234 I 234 I Sbjct: 202 I 202 >gi|229084537|ref|ZP_04216810.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44] gi|228698773|gb|EEL51485.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44] Length = 196 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 126 KKEQPLYEDLTEREFEILMLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 185 Query: 225 IAKAIR 230 + A R Sbjct: 186 VIYAFR 191 >gi|239825761|ref|YP_002948385.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239806054|gb|ACS23119.1| two component transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 199 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+ E + LQL + T+ EI+E L +S TV ++ S KLD +R+ A+ KA++ G Sbjct: 138 LTKIELNILQLISEDKTNTEISELLNISRRTVEHHVSSILRKLDVDSRVGAVVKAMKLG 196 >gi|170728910|ref|YP_001762936.1| two component LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814257|gb|ACA88841.1| two component transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 198 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+++E L+LA +G T+ EIA L ++ TV YL AT KL NRI A A + G+ Sbjct: 138 LSDKERKALRLASEGKTTSEIAALLFIAEGTVRNYLSEATSKLHGSNRIDAARIAKQKGW 197 Query: 234 I 234 + Sbjct: 198 L 198 >gi|302526792|ref|ZP_07279134.1| predicted protein [Streptomyces sp. AA4] gi|302435687|gb|EFL07503.1| predicted protein [Streptomyces sp. AA4] Length = 195 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 162 ELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +LF R +A A L RE L++ DG+ + EIA L S TV + T +L Sbjct: 121 DLFDARHAAPPAPTLDARERDVLRMVADGHETAEIASALAYSARTVTTIVHDITHRLRLR 180 Query: 220 NRIQAIAKAIRFGYI 234 NR A+A A+R G I Sbjct: 181 NRAHAVAFALRQGLI 195 >gi|291302327|ref|YP_003513605.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571547|gb|ADD44512.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 222 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 159 DFLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 D E K+R + + L+ RE+ L+L DG + IA++L +S T ++ KL Sbjct: 138 DLAEAMKRRLTPSGPQLSPRESQVLKLLADGMSVAGIAKQLYVSESTAKTHISKLYEKLG 197 Query: 218 AVNRIQAIAKAIRFGYI 234 A NR QA+ A++ G + Sbjct: 198 AGNRAQALMTALKLGLL 214 >gi|261405105|ref|YP_003241346.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261281568|gb|ACX63539.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 200 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL + S N LTERE L L DG ++EIA +L ++ TV Y+ KL N Sbjct: 126 ELVDEAYSGEENPLTEREKEVLGLIADGKNTKEIANQLFITTGTVRNYISVILDKLGVSN 185 Query: 221 RIQAIAKAIRFGY 233 RI+AI + G+ Sbjct: 186 RIEAITRFKEKGW 198 >gi|46310121|gb|AAS87341.1| putative regulatory protein [uncultured gamma proteobacterium] Length = 233 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 34/64 (53%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 FL+ F + L+ RE ++L G + +E+A LG+S TV +L +A KLD Sbjct: 165 FLKAFCTVPKQRQALSLREAEVVRLVAGGASDKEVARALGISFTTVRTHLKNAMAKLDCR 224 Query: 220 NRIQ 223 NR Q Sbjct: 225 NRTQ 228 >gi|148265144|ref|YP_001231850.1| regulatory protein, LuxR [Geobacter uraniireducens Rf4] gi|146398644|gb|ABQ27277.1| transcriptional regulator, LuxR family [Geobacter uraniireducens Rf4] Length = 250 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H A QV++ +K+ + +T RE L G +S +I+ L +S TV ++ Sbjct: 168 HQAFRQVLS-----VEKKGKISTTITIREREVLNWIKKGKSSWDISTILAISERTVKFHV 222 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KLDAV+RI A+A A+ G I Sbjct: 223 DNVMRKLDAVSRIHAVAVALSVGLI 247 >gi|86139948|ref|ZP_01058513.1| Two Component Transcriptional Regulator, LuxR family protein [Roseobacter sp. MED193] gi|85823366|gb|EAQ43576.1| Two Component Transcriptional Regulator, LuxR family protein [Roseobacter sp. MED193] Length = 210 Score = 42.7 bits (99), Expect = 0.042, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query: 166 KRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KR A R LT RE+ ++ G T+ +I+ +L +S TV Y+GS K A NR++ Sbjct: 142 KRKEAERLRLTARESQVVRHLMQGMTNRQISAELNISEKTVKHYVGSLKDKFGAANRLEV 201 Query: 225 IAKAIRFG 232 + +A R G Sbjct: 202 VLEAQRLG 209 >gi|332716184|ref|YP_004443650.1| two component response regulator [Agrobacterium sp. H13-3] gi|325062869|gb|ADY66559.1| two component response regulator [Agrobacterium sp. H13-3] Length = 783 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE LQL G ++++IA+ L +S TV +LG+ KLD R +AI A G+ Sbjct: 723 LSQREAQMLQLLASGMSNKKIAQTLNISEVTVKFHLGNLFRKLDCKRRAEAIRAAKALGW 782 Query: 234 I 234 + Sbjct: 783 L 783 >gi|282899592|ref|ZP_06307556.1| Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] gi|281195471|gb|EFA70404.1| Transcriptional Regulator, LuxR family [Cylindrospermopsis raciborskii CS-505] Length = 97 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + L G T++EIA KL +S TV+ ++ + K NR+ + A+++G Sbjct: 12 LSDRELQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILTKTRTDNRVALVRWALQWGK 71 Query: 234 IC 235 +C Sbjct: 72 VC 73 >gi|197105564|ref|YP_002130941.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] gi|196478984|gb|ACG78512.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] Length = 226 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LT RE L G T EIA++LGLS HTV +++ + KL R +A+ +A++ Sbjct: 161 APHLTPRELDILWGIAKGLTYNEIADRLGLSRHTVPSHIKAIYRKLQVATRGEAVYEAVQ 220 Query: 231 FGYI 234 G I Sbjct: 221 CGLI 224 >gi|223939687|ref|ZP_03631560.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223891644|gb|EEF58132.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 207 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 2/75 (2%) Query: 155 QVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 Q+ ++ F K S L+ E LQL GY +EIAEK+G+S TV Y+ + Sbjct: 129 QLARRLVQFFSKPQDVSPVSQLSPGEREFLQLLSKGYVYKEIAEKMGISTDTVRYYVRTV 188 Query: 213 TVKLDAVNRIQAIAK 227 KL +R +A+ K Sbjct: 189 YEKLHVHSRTEAVVK 203 >gi|94970774|ref|YP_592822.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552824|gb|ABF42748.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 211 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L DG+ +++IA++L +S TVN ++ + K+ A +R A+ A+R G Sbjct: 148 SLTSRELEVLHLIRDGHRNKQIADELSISETTVNFHIKNIVGKMGANDRTHAVTIAVRRG 207 Query: 233 YI 234 + Sbjct: 208 LL 209 >gi|21222655|ref|NP_628434.1| response regulator [Streptomyces coelicolor A3(2)] gi|8439479|emb|CAB94221.1| putative response regulator [Streptomyces coelicolor A3(2)] Length = 219 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L+L +G + EIA KL S TV + T +L NR A+A A+R G Sbjct: 158 GLAPREVDVLRLVAEGLDTGEIAGKLSYSERTVKNVMHGLTTRLHLRNRAHAVAYALREG 217 Query: 233 YI 234 YI Sbjct: 218 YI 219 >gi|325924567|ref|ZP_08186081.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325544945|gb|EGD16285.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 210 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 38/71 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F+ + +ERE + L+L GY+++EIA L L+ TV Y+ + KL +R + Sbjct: 140 FRDQQPPRETFSEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTR 199 Query: 224 AIAKAIRFGYI 234 A+ KAI I Sbjct: 200 AVLKAITLRVI 210 >gi|315649841|ref|ZP_07902924.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315274815|gb|EFU38196.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 240 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G +++ I E L +S TV ++ S K++ +R QA+ +I++G+ Sbjct: 178 LTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYGW 237 Query: 234 IC 235 + Sbjct: 238 VT 239 >gi|291518206|emb|CBK73427.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Butyrivibrio fibrisolvens 16/4] Length = 210 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 36/53 (67%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +++++E+E +QL +G++++EIA+KL LS TV YL + KL+ +R Q Sbjct: 150 SKDISEKEYEVIQLVAEGFSNKEIAQKLFLSEGTVRNYLSTILEKLELRDRTQ 202 >gi|226306044|ref|YP_002766004.1| LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226185161|dbj|BAH33265.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 285 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G T+ E ++L L TV +YL SA KLDA +R +A+ A R G Sbjct: 224 LTPREVDVLSQVALGCTNIEAGQRLSLRPETVKSYLRSAMGKLDASSRHEAVVTARRLGL 283 Query: 234 I 234 + Sbjct: 284 L 284 >gi|254422719|ref|ZP_05036437.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190208|gb|EDX85172.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 235 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+ G ++ +IAEKL ++V TV ++ + KL A +R QA +A+R G Sbjct: 174 LTERELEILECIVSGCSNAQIAEKLFVTVGTVKTHVRNILNKLGASDRTQAAVRALRAGL 233 Query: 234 I 234 I Sbjct: 234 I 234 >gi|288904765|ref|YP_003429986.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|288731490|emb|CBI13044.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] Length = 198 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + L+++E LQL G T++EIA+ L LS TV Y+ S KL A NR Sbjct: 126 ELMETMMTQDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNR 185 Query: 222 IQAIAKAIRFGYI 234 ++A A G++ Sbjct: 186 VEATRIAEEHGWV 198 >gi|228984618|ref|ZP_04144793.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775145|gb|EEM23536.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 204 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 134 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 193 Query: 225 IAKAIR 230 + A R Sbjct: 194 VIYAFR 199 >gi|228920248|ref|ZP_04083596.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228926569|ref|ZP_04089640.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121079|ref|ZP_04250319.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201] gi|229138230|ref|ZP_04266826.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26] gi|229183733|ref|ZP_04310953.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1] gi|229195738|ref|ZP_04322500.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293] gi|228587744|gb|EEK45800.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293] gi|228599776|gb|EEK57376.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1] gi|228645262|gb|EEL01498.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26] gi|228662408|gb|EEL18008.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201] gi|228833157|gb|EEM78723.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228839447|gb|EEM84740.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 204 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 134 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 193 Query: 225 IAKAIR 230 + A R Sbjct: 194 VIYAFR 199 >gi|190404427|ref|YP_001961058.1| rcorf83 [Agrobacterium rhizogenes] gi|158322223|gb|ABW33640.1| rcorf83 [Agrobacterium rhizogenes] Length = 224 Score = 42.7 bits (99), Expect = 0.043, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 51/118 (43%), Gaps = 6/118 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA----A 171 +G+ PV F + F S + +++A A V+ L S+ Sbjct: 102 SGLTIPVEGSFGSTMMLTFASSEKKVEKAKLLDAQKAVRTVLAIHYRLKIIASTTIIAPK 161 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA--VNRIQAIAK 227 R L+ RE CL A G ++ E A G++ TV YL A KLDA V + AIAK Sbjct: 162 RLLSPREAMCLMWAAKGKSAPETAMLTGINARTVQHYLDKAREKLDAATVPHLVAIAK 219 >gi|298485722|ref|ZP_07003801.1| ATP-dependent transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159748|gb|EFI00790.1| ATP-dependent transcriptional regulator [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 909 Score = 42.7 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 848 LSVRELGVLHLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKALGL 907 Query: 234 I 234 + Sbjct: 908 L 908 >gi|297156369|gb|ADI06081.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 280 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 51/112 (45%), Gaps = 21/112 (18%) Query: 144 EVIIEAHG---ACYQVITDFL----------ELFKKRS-----SAAR---NLTERETSCL 182 E + EAHG A Q +TD L K S +AAR L+ RE L Sbjct: 168 EEVREAHGDLRALAQQVTDPQLRERILSACGRLAKASSGGTADTAARPGVELSPREVDVL 227 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ A++LGL TV +YL S+ KL A R+ A+ +A R G + Sbjct: 228 ACVASGATNSAAADRLGLRPETVKSYLRSSMRKLGAHTRLHAVVEARRAGLL 279 >gi|302540643|ref|ZP_07292985.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458261|gb|EFL21354.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 227 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + LA G ++ EIA++L +S TV +++ A KLD +R Q + A + G Sbjct: 159 LTEREREVMALAAHGKSNAEIADQLVVSPLTVRSHIQRAMTKLDVRDRAQLVVIAYQSGL 218 Query: 234 I 234 + Sbjct: 219 V 219 >gi|170782478|ref|YP_001710811.1| putative two-component response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157047|emb|CAQ02220.1| putative two-component response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 212 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT RE L +G T++EIA +L LS TV ++G KL+ +R+QA+ A Sbjct: 146 RPLTARELEVLTALAEGLTNQEIAGRLFLSESTVKTHVGRVLAKLEVRDRVQAVILAYDC 205 Query: 232 GYI 234 G + Sbjct: 206 GLV 208 >gi|166713294|ref|ZP_02244501.1| transcriptional regulator [Xanthomonas oryzae pv. oryzicola BLS256] Length = 826 Score = 42.7 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +ERE L GY++++IA +L LS +TV +L + KLDA +R A+A+A++ G Sbjct: 752 FSERELEVLAQLARGYSNKQIARRLHLSENTVKFHLKNLYRKLDARSRESALAQAVQRGL 811 Query: 234 I 234 + Sbjct: 812 L 812 >gi|114048791|ref|YP_739341.1| LuxR family transcriptional regulator [Shewanella sp. MR-7] gi|113890233|gb|ABI44284.1| transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 221 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 40/69 (57%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 Q + D EL ++ + LT RE + +Q +G ++EIA++L +S HTV A++ S Sbjct: 137 QKLEDNNELSADNAAVLQMLTNRERTIIQFVSNGARNKEIADRLFISEHTVKAHISSIFR 196 Query: 215 KLDAVNRIQ 223 K + NR++ Sbjct: 197 KTQSRNRVE 205 >gi|333027222|ref|ZP_08455286.1| putative response regulator [Streptomyces sp. Tu6071] gi|332747074|gb|EGJ77515.1| putative response regulator [Streptomyces sp. Tu6071] Length = 247 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L+L +G + EIA KL S TV + T +L NR A+A A+R G Sbjct: 186 GLAPREADVLRLVAEGLDTGEIAGKLSYSERTVKNVMHGLTTRLHLRNRAHAVAYALRQG 245 Query: 233 YI 234 YI Sbjct: 246 YI 247 >gi|312139261|ref|YP_004006597.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311888600|emb|CBH47912.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 291 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L A G ++ IAE+L + TV +YL SA KLDA +R +A+ A R G Sbjct: 230 LSPREVDVLSHAALGCSNVVIAERLSVKPETVKSYLRSAMSKLDAHSRREAVVAARRLGL 289 Query: 234 I 234 + Sbjct: 290 L 290 >gi|261409652|ref|YP_003245893.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329928696|ref|ZP_08282545.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5] gi|261286115|gb|ACX68086.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328937477|gb|EGG33895.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5] Length = 240 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G +++ I E L +S TV ++ S K++ +R QA+ +I++G+ Sbjct: 178 LTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKMEVDDRTQAVINSIKYGW 237 Query: 234 IC 235 + Sbjct: 238 VT 239 >gi|157412510|ref|YP_001483376.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9215] gi|254526652|ref|ZP_05138704.1| bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9202] gi|157387085|gb|ABV49790.1| Regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9215] gi|221538076|gb|EEE40529.1| bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9202] Length = 92 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L DG T++EIA KL +S TV+ ++ + K + NR+ + A+ G Sbjct: 16 LSAREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDNGK 75 Query: 234 IC 235 IC Sbjct: 76 IC 77 >gi|148272451|ref|YP_001222012.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830381|emb|CAN01316.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 232 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT RE L +G T++EIA +L LS TV ++G KL+ +R+QA+ A Sbjct: 166 RPLTARELEVLTALAEGLTNQEIAGRLYLSESTVKTHVGRVLAKLEVRDRVQAVILAYDC 225 Query: 232 GYI 234 G + Sbjct: 226 GLV 228 >gi|56751843|ref|YP_172544.1| transcriptional regulator [Synechococcus elongatus PCC 6301] gi|81301073|ref|YP_401281.1| LuxR family transcriptional regulator [Synechococcus elongatus PCC 7942] gi|56686802|dbj|BAD80024.1| transcriptional regulator [Synechococcus elongatus PCC 6301] gi|81169954|gb|ABB58294.1| transcriptional regulator, LuxR family [Synechococcus elongatus PCC 7942] Length = 91 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + L G T++EIA +L +S TV+ ++ + K NR+ + A+++G Sbjct: 13 LSERELQIVDLVAAGLTNQEIATRLDISKRTVDNHISNILTKTGTDNRVALVRWALQWGK 72 Query: 234 IC 235 +C Sbjct: 73 VC 74 >gi|319650652|ref|ZP_08004792.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317397833|gb|EFV78531.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ + K++ +R QA+ AI+ G+ Sbjct: 165 LTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGW 224 Query: 234 I 234 + Sbjct: 225 V 225 >gi|302872826|ref|YP_003841462.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor obsidiansis OB47] gi|302575685|gb|ADL43476.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor obsidiansis OB47] Length = 216 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 56/110 (50%), Gaps = 10/110 (9%) Query: 124 LGFHKNGYVIFTSE--------FLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARN 173 L F +GY++ +S+ + +L +V+I+ A + + L+ + +N Sbjct: 95 LSFGADGYILKSSDAQHIIDTIYAVLDGKVVIDKEIALFVANIFKKDLQNVNTTENKLKN 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ERE +L GY++++I++ L +S TV Y+ + KL+ NR Q Sbjct: 155 LSERELEIARLIAQGYSNKDISKMLFISEGTVRNYISTILEKLELKNRTQ 204 >gi|312197193|ref|YP_004017254.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228529|gb|ADP81384.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 278 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L +G ++ E A++L +S TV AYL S KL NR A+ A R G Sbjct: 217 LTQRELEVLGLVAEGLSNAEAAQRLVVSPETVKAYLRSIRSKLGVSNRTAAVTVARRSGL 276 Query: 234 I 234 + Sbjct: 277 L 277 >gi|182438916|ref|YP_001826635.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779572|ref|ZP_08238837.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178467432|dbj|BAG21952.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659905|gb|EGE44751.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 229 Score = 42.7 bits (99), Expect = 0.044, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 10/95 (10%) Query: 149 AHGACYQVITDFLELFKKRSSAARN--------LTERETSCLQLAGDGYTSEEIAEKLGL 200 A ++I DF ++ S A R LT RE+ L+L G +++EIA +L L Sbjct: 131 APSVTRRLIADFAA--QRPSGATRGGQALRRHGLTPRESEVLELIARGLSNQEIAGRLVL 188 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + TV ++G KLD +R QA+ A G + Sbjct: 189 AEQTVKTHIGRVLAKLDLRDRAQAVIFAYESGLVT 223 >gi|124266090|ref|YP_001020094.1| ATP-dependent transcriptional regulator-like protein [Methylibium petroleiphilum PM1] gi|124258865|gb|ABM93859.1| ATP-dependent transcriptional regulator-like protein protein [Methylibium petroleiphilum PM1] Length = 933 Score = 42.7 bits (99), Expect = 0.044, Method: Composition-based stats. Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 13/86 (15%) Query: 159 DFLELFKKRS------SAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 D++EL + S AA N L+ERE L+ DG T+ EIA +L +S +TV Sbjct: 846 DYIELLLEASGTDLGRQAAGNALTEALSEREKEMLRFLLDGTTNREIAGRLFVSENTVKF 905 Query: 208 YLGSATVKLDAVNRIQAI--AKAIRF 231 +L + KL NR+QAI A+A+R Sbjct: 906 HLKNIYSKLGVGNRLQAINTARALRL 931 >gi|322514959|ref|ZP_08067972.1| DNA-binding response regulator [Actinobacillus ureae ATCC 25976] gi|322119067|gb|EFX91227.1| DNA-binding response regulator [Actinobacillus ureae ATCC 25976] Length = 199 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L + S RNLT+RE +L G ++EIAEKL LSV T+ + +A KL+ N Sbjct: 129 KLVSSKLSLTRNLTKREYEICELLILGLDTKEIAEKLSLSVKTIYVHRDNAMSKLNVKNN 188 Query: 222 IQ 223 ++ Sbjct: 189 VE 190 >gi|300863456|ref|ZP_07108411.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300338519|emb|CBN53553.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 244 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 39/64 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE ++L +G ++EEI ++L +S+ TV ++ + KL +R QA +A+R Sbjct: 180 ANPLTEREKEVIELIVEGCSNEEICKQLYISLGTVKTHVRNILNKLSCDDRTQAAVRALR 239 Query: 231 FGYI 234 G + Sbjct: 240 AGLV 243 >gi|296269819|ref|YP_003652451.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092606|gb|ADG88558.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 226 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L +S TV ++G+ KL +R+QA+ A G Sbjct: 159 RLTERELEVLRLIAKGMSNAEIAAELVVSETTVKTHVGNVLTKLGLRDRVQAVVLAYETG 218 Query: 233 YIC 235 + Sbjct: 219 LVV 221 >gi|271966802|ref|YP_003340998.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509977|gb|ACZ88255.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 213 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ EIA +L +S+ TV ++G+ KL+A +R +A+ A G Sbjct: 149 RLTSREADVLRLMTRGLSNGEIAGELVISMETVKTHVGNVLAKLEARDRTRAVITAYESG 208 Query: 233 YIC 235 ++ Sbjct: 209 FVS 211 >gi|159040340|ref|YP_001539593.1| LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157919175|gb|ABW00603.1| transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 207 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L+L +G+ + EIA++L S TV + T +L NR A+A A+R Sbjct: 144 AAGLTSREIDVLRLMANGFDTHEIADELCYSERTVKNVIYGVTHRLKLRNRAHAVAYALR 203 Query: 231 FGYI 234 G I Sbjct: 204 TGMI 207 >gi|119715573|ref|YP_922538.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119536234|gb|ABL80851.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 188 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A+ LT RE L L G ++ EIAE L LS+++V Y+ SA K+ +R +A+A + Sbjct: 114 ASVALTAREVEVLALITQGMSNPEIAEHLYLSINSVKTYIRSAYAKIGVTSRARAVAWCL 173 Query: 230 RFGY 233 G+ Sbjct: 174 LHGF 177 >gi|325067354|ref|ZP_08126027.1| two component transcriptional regulator, LuxR family protein [Actinomyces oris K20] Length = 244 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G ++ EIA L +S TV ++G+ KLD +R+QA+ A G Sbjct: 182 SLTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAYETG 241 Query: 233 YIC 235 + Sbjct: 242 LMA 244 >gi|300863692|ref|ZP_07108626.1| Two component transcriptional regulator, LuxR family [Oscillatoria sp. PCC 6506] gi|300338324|emb|CBN53772.1| Two component transcriptional regulator, LuxR family [Oscillatoria sp. PCC 6506] Length = 224 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 4/60 (6%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE LQL DG ++ +I ++L LS TV Y+ S K D NR A+ +RF Sbjct: 162 SLTQREKDVLQLLTDGLSNAQIGDRLHLSHRTVEKYVSSLLRKSDRTNR----AELVRFA 217 >gi|228900120|ref|ZP_04064353.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL 4222] gi|228859526|gb|EEN03953.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL 4222] Length = 199 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 129 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 188 Query: 225 IAKAIR 230 + A R Sbjct: 189 VIYAFR 194 >gi|228914112|ref|ZP_04077732.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229155107|ref|ZP_04283220.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342] gi|228628392|gb|EEK85106.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342] gi|228845565|gb|EEM90596.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 204 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 134 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 193 Query: 225 IAKAIR 230 + A R Sbjct: 194 VIYAFR 199 >gi|118467509|ref|YP_888339.1| transcriptional regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118168796|gb|ABK69692.1| transcriptional regulatory protein [Mycobacterium smegmatis str. MC2 155] Length = 910 Score = 42.7 bits (99), Expect = 0.045, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 33/65 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 KR LT +ET QLA G T+ EI +L +S HTV +L + KL +R Q Sbjct: 846 KRKRTGTALTPQETQVAQLAAAGLTNTEIGSQLFISAHTVEWHLSNVYAKLAIKSRRQLR 905 Query: 226 AKAIR 230 A +R Sbjct: 906 AMKLR 910 >gi|110634204|ref|YP_674412.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285188|gb|ABG63247.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 310 Score = 42.7 bits (99), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L+L K+ LT RE L L +G +++EIA++LG+S TV + A K +A Sbjct: 237 LDLIKRLPRPEEPLTGREQEVLSLVLEGRSNKEIAKQLGISHRTVEIHRSRAMAKYNATT 296 Query: 221 RIQAIAKAI 229 +Q I +A+ Sbjct: 297 AMQLIRRAM 305 >gi|312882580|ref|ZP_07742320.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309369740|gb|EFP97252.1| transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 268 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 2/80 (2%) Query: 157 ITDFLE-LFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + FLE L K++S + + + E CL +G ++EI++ G SV TVN YL S Sbjct: 188 VDGFLESLIKQKSPSFYEIPKDHELLCLFFFKEGKEAKEISQITGYSVATVNTYLRSVRE 247 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 K++ QA+ KAI+ G I Sbjct: 248 KMNVEKTYQAVIKAIQDGLI 267 >gi|294012613|ref|YP_003546073.1| LuxR-family putative transcriptional regulator [Sphingobium japonicum UT26S] gi|292675943|dbj|BAI97461.1| LuxR-family putative transcriptional regulator [Sphingobium japonicum UT26S] Length = 153 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 34/52 (65%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L++ + CL+ A +G +S+EIA +GL+ TV+ YL A + L+A NR +A Sbjct: 8 KLSDVQKRCLRFAAEGRSSKEIAPLVGLTHQTVDQYLHRARMILNAENRREA 59 >gi|290955190|ref|YP_003486372.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260644716|emb|CBG67801.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA ++ ++L+ + + +T RE L+L +G++S+EIAE L +S+ TV+ + Sbjct: 135 GAVTALVRNYLDRVRHGEEPPDQVVTPREEEVLKLVAEGHSSKEIAEMLFISIKTVHRHR 194 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G I Sbjct: 195 ANLLHKLGLRDRLELTRYAIRAGLI 219 >gi|302546840|ref|ZP_07299182.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces hygroscopicus ATCC 53653] gi|302464458|gb|EFL27551.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE + DG + EIA++L +S+ TV A+ GS KL NR+Q Sbjct: 165 TLTERELDTARAIADGLGNPEIAQRLHISIATVKAHTGSLFAKLTVDNRVQ 215 >gi|228932822|ref|ZP_04095692.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945136|ref|ZP_04107496.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229010843|ref|ZP_04168040.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048] gi|229016795|ref|ZP_04173725.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273] gi|229023000|ref|ZP_04179517.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272] gi|229058174|ref|ZP_04196563.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603] gi|229090494|ref|ZP_04221732.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42] gi|229096030|ref|ZP_04227005.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29] gi|229102142|ref|ZP_04232853.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28] gi|229114984|ref|ZP_04244396.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3] gi|229132346|ref|ZP_04261200.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196] gi|229160490|ref|ZP_04288485.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803] gi|229166381|ref|ZP_04294138.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621] gi|228617123|gb|EEK74191.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621] gi|228622900|gb|EEK79731.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803] gi|228651052|gb|EEL07033.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196] gi|228668496|gb|EEL23926.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3] gi|228681342|gb|EEL35508.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28] gi|228687415|gb|EEL41318.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29] gi|228692844|gb|EEL46565.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42] gi|228720139|gb|EEL71721.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603] gi|228738306|gb|EEL88785.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272] gi|228744531|gb|EEL94603.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273] gi|228750517|gb|EEM00346.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048] gi|228814580|gb|EEM60841.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826872|gb|EEM72636.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 196 Score = 42.7 bits (99), Expect = 0.046, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 126 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 185 Query: 225 IAKAIR 230 + A R Sbjct: 186 VIYAFR 191 >gi|229074728|ref|ZP_04207749.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18] gi|228708471|gb|EEL60623.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18] Length = 199 Score = 42.4 bits (98), Expect = 0.046, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 129 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 188 Query: 225 IAKAIR 230 + A R Sbjct: 189 VIYAFR 194 >gi|227112193|ref|ZP_03825849.1| quorum-sensing transcriptional activator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 244 Score = 42.4 bits (98), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RET L L G T +E++ LG+S TV ++ ++ KLD +N AI KA+ Sbjct: 169 LSPRETEVLFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELN 227 >gi|289208427|ref|YP_003460493.1| LuxR family transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288944058|gb|ADC71757.1| transcriptional regulator, LuxR family [Thioalkalivibrio sp. K90mix] Length = 232 Score = 42.4 bits (98), Expect = 0.046, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 14/134 (10%) Query: 109 EGGLLPFAGIAFP-----VRL--GFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVIT 158 +G FAG P +RL + G T + +L ++ +G + ++T Sbjct: 76 DGAKTVFAGFNIPNEDEALRLLDVLYLQGIFYKTDQLDLLCKGILCLLNGDFWMSRHLMT 135 Query: 159 DFLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + L++++ + A LT+RE L + G G T+ IA++L +S HTV ++L + Sbjct: 136 RLVRLYRQQRTNTYRPACGLTQRELEILAMLGSGETNMNIAKQLFISEHTVKSHLYNIFR 195 Query: 215 KLDAVNRIQAIAKA 228 K++ NR QAI A Sbjct: 196 KIEVKNRTQAINWA 209 >gi|198276810|ref|ZP_03209341.1| hypothetical protein BACPLE_03013 [Bacteroides plebeius DSM 17135] gi|198270335|gb|EDY94605.1| hypothetical protein BACPLE_03013 [Bacteroides plebeius DSM 17135] Length = 215 Score = 42.4 bits (98), Expect = 0.046, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 9/116 (7%) Query: 124 LGFHKNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKK-------RSSAARNL 174 L NGY+ +E L+ A + +++ G + + ++ K + L Sbjct: 95 LKMQLNGYLAKDTQAEELICAIQTVVQGKGFYFGNTISYNDIIKAFGGEENVKKRKPYEL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T+RE +QL +GYTS+EIA +L + +TV Y KLD + I+ + A + Sbjct: 155 TDRELEVIQLLANGYTSKEIANELNIDRNTVETYKDRIKSKLDCKSAIEIVVFAYK 210 >gi|160898821|ref|YP_001564403.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364405|gb|ABX36018.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 259 Score = 42.4 bits (98), Expect = 0.046, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 12/108 (11%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA---------ARNLTER 177 GY++ S F V+ A+G + L+ F K A A L+ R Sbjct: 143 GYLVKNSWFGNYPQAVLQVANGGASVTPSLARRLLQRFDKTQGAEPKRRTPDEADRLSTR 202 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 E L++ GYTS EI +L +S TVN ++ + KL R QA+ Sbjct: 203 EREVLRMVASGYTSAEIGSRLMISAMTVNTHIKNIYRKLQVRTRAQAV 250 >gi|2495418|sp|Q46751|CARR_PECCC RecName: Full=Transcriptional activator protein CarR gi|765139|gb|AAC45995.1| CarR [Pectobacterium carotovorum] Length = 244 Score = 42.4 bits (98), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RET L L G T +E++ LG+S TV ++ ++ KLD +N AI KA+ Sbjct: 169 LSPRETEVLFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLDVINSRHAITKALELN 227 >gi|312959040|ref|ZP_07773559.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311286810|gb|EFQ65372.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 909 Score = 42.4 bits (98), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S L+ RE + LQL +G +++EI+ +L +S+HTV + KL R QA+A+ Sbjct: 842 SPVHETLSVRELAVLQLIAEGCSNQEISNRLFISLHTVKTHASHINSKLGVERRTQAVAR 901 Query: 228 A 228 A Sbjct: 902 A 902 >gi|309790624|ref|ZP_07685178.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] gi|308227352|gb|EFO81026.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] Length = 226 Score = 42.4 bits (98), Expect = 0.046, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 37/63 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A LTERE S LQ+ G +++EI+ L +SV TV ++ S KLD +R QA Sbjct: 160 SERAELLTERERSILQMLAKGCSNQEISAALMISVGTVKNHISSILGKLDVRDRTQAALW 219 Query: 228 AIR 230 AI+ Sbjct: 220 AIQ 222 >gi|302533753|ref|ZP_07286095.1| two-component system response regulator [Streptomyces sp. C] gi|302442648|gb|EFL14464.1| two-component system response regulator [Streptomyces sp. C] Length = 221 Score = 42.4 bits (98), Expect = 0.046, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G +++E++E LG+ TV ++ + K + +R QA+ A G Sbjct: 156 RLTDREADVLRLMATGLSNQEMSEHLGVGPQTVKTHVAAVLAKTGSRDRTQAVIAAYEGG 215 Query: 233 YIC 235 +I Sbjct: 216 FIM 218 >gi|302518950|ref|ZP_07271292.1| response regulator [Streptomyces sp. SPB78] gi|302427845|gb|EFK99660.1| response regulator [Streptomyces sp. SPB78] Length = 217 Score = 42.4 bits (98), Expect = 0.046, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L+L +G + EIA KL S TV + T +L NR A+A A+R G Sbjct: 156 GLAPREADVLRLVAEGLDTGEIAGKLSYSERTVKNVMHGLTTRLHLRNRAHAVAYALRQG 215 Query: 233 YI 234 YI Sbjct: 216 YI 217 >gi|86740943|ref|YP_481343.1| ATP-dependent transcription regulator LuxR [Frankia sp. CcI3] gi|86567805|gb|ABD11614.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Frankia sp. CcI3] Length = 914 Score = 42.4 bits (98), Expect = 0.046, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 1/89 (1%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLS 201 ++++ AH + ++ +R+ A L RE L+L G +++EIA LGL+ Sbjct: 821 SKLLATAHADAERAAIPIIDRPAERNPAPEEPLNAREIDILRLLDRGLSNKEIARNLGLT 880 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++TV YL S KL R +++++A R Sbjct: 881 INTVKWYLKSIYTKLGVARRGESVSEARR 909 >gi|84501462|ref|ZP_00999667.1| putative transcription regulator protein [Oceanicola batsensis HTCC2597] gi|84390753|gb|EAQ03241.1| putative transcription regulator protein [Oceanicola batsensis HTCC2597] Length = 232 Score = 42.4 bits (98), Expect = 0.046, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 36/77 (46%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 E G ++ D L + R A LT RE L+L G ++ IA LGLS HTV Sbjct: 137 ENEGGQTRLPPDALGGVRPRLDDAAGLTGRELQVLELVSAGKQNKSIANDLGLSEHTVKL 196 Query: 208 YLGSATVKLDAVNRIQA 224 ++ KL+ NR A Sbjct: 197 HIHHVLAKLNVRNRTGA 213 >gi|126462491|ref|YP_001043605.1| two component LuxR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|126104155|gb|ABN76833.1| two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides ATCC 17029] Length = 240 Score = 42.4 bits (98), Expect = 0.046, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 8/110 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLTERETSCLQL 184 +G V+ T+ L N + G Y LEL + R S+ LTE+E + Sbjct: 135 SGIVLKTTPVRSLGNAIRFMHAGEHYLP----LELARDRRQAPDSSGGRLTEKEMLVMSY 190 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++EIA L L+ T+ ++ S KL A NR QA+ A G I Sbjct: 191 LAEGRQNKEIAHGLNLAEPTIKMHVKSICKKLGATNRTQAVVTARNLGII 240 >gi|119715592|ref|YP_922557.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119536253|gb|ABL80870.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 217 Score = 42.4 bits (98), Expect = 0.046, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G +++EIAE LS+++V Y+ +A K++ R QA+A + G+ Sbjct: 146 LTAREAEVLALITQGLSNQEIAEHTYLSINSVKTYIRTAYRKIEVTRRAQAVAWGMTHGF 205 >gi|186685215|ref|YP_001868411.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467667|gb|ACC83468.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 239 Score = 42.4 bits (98), Expect = 0.046, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQL +G ++ IAE+L ++V TV ++ + KL A +R QA +A+R G Sbjct: 178 LTERELEVLQLIVEGCSNALIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 237 Query: 234 I 234 + Sbjct: 238 V 238 >gi|325001835|ref|ZP_08122947.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 84 Score = 42.4 bits (98), Expect = 0.047, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT RE L+LA G + EIA++L L V TV A + + K A +R QA+ A Sbjct: 13 AGAGLTAREGEVLRLAARGLSDAEIADELRLDVPTVTADVAAVLAKTGARHRTQAVVTAY 72 Query: 230 RFGYI 234 G++ Sbjct: 73 ASGFV 77 >gi|294085444|ref|YP_003552204.1| LuxR family two component transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292665019|gb|ADE40120.1| two component transcriptional regulator, LuxR family [Candidatus Puniceispirillum marinum IMCC1322] Length = 207 Score = 42.4 bits (98), Expect = 0.047, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 6/94 (6%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 LM + E+ I + + +++ K ++ L++RE L G+++++IAE++ Sbjct: 118 LMASGEIFIPVS------VAEHVQIAKPSTAKDTFLSKREREVLDGLLSGHSNKQIAERI 171 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 GLS T+ +L S KL A NR A +AI G Sbjct: 172 GLSEVTIKYHLKSLRSKLGARNRTHAALRAIELG 205 >gi|229491400|ref|ZP_04385224.1| response regulator receiver protein [Rhodococcus erythropolis SK121] gi|229321685|gb|EEN87482.1| response regulator receiver protein [Rhodococcus erythropolis SK121] Length = 367 Score = 42.4 bits (98), Expect = 0.047, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G T+ E ++L L TV +YL SA KLDA +R +A+ A R G Sbjct: 305 TLTPREVDVLSQVALGCTNIEAGQRLSLRPETVKSYLRSAMGKLDASSRHEAVVTARRLG 364 Query: 233 YI 234 + Sbjct: 365 LL 366 >gi|172037280|ref|YP_001803781.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171698734|gb|ACB51715.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 247 Score = 42.4 bits (98), Expect = 0.047, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L +G ++ EIAE L LS +T+ ++ KL +R+QA A+R G Sbjct: 187 LSERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGL 246 Query: 234 I 234 + Sbjct: 247 V 247 >gi|86750181|ref|YP_486677.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86573209|gb|ABD07766.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 217 Score = 42.4 bits (98), Expect = 0.047, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%) Query: 165 KKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + R++AA + L ++ L L G+T+ EIAE+LG+S+ T ++ + VKL A NR Sbjct: 140 RARTAAAESEITLGSQQKKVLALLVKGFTNSEIAERLGISLPTARYHVSAILVKLGASNR 199 Query: 222 IQAIAKAIRFGYI 234 +A A+R + Sbjct: 200 AEAAGLAVRLNIV 212 >gi|311897945|dbj|BAJ30353.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 338 Score = 42.4 bits (98), Expect = 0.047, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT +E L+L +G T E ++LG+S+ TV + +++DA +R QA + Sbjct: 268 RGLTGQERELLRLLAEGLTDERAGQRLGVSLRTVRRMMADLMIRMDARSRFQAGIQVAAL 327 Query: 232 GYI 234 G++ Sbjct: 328 GWL 330 >gi|297204313|ref|ZP_06921710.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|297148636|gb|EFH29052.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 203 Score = 42.4 bits (98), Expect = 0.047, Method: Compositional matrix adjust. Identities = 27/57 (47%), Positives = 32/57 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +A LT RE S L LA +G + EIA L LS TV Y+ + T K A NRI AI Sbjct: 138 AAEMPLTRRELSVLSLAAEGASIAEIAGDLCLSHGTVRNYMAAITRKTGARNRIDAI 194 >gi|282890775|ref|ZP_06299295.1| hypothetical protein pah_c026o112 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499368|gb|EFB41667.1| hypothetical protein pah_c026o112 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 265 Score = 42.4 bits (98), Expect = 0.047, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A +LT RE L+ +GY + IAE+L LS TV Y+ + KL ++++ I +A Sbjct: 196 PAFSLTPREKDILKFVSNGYPASYIAEQLQLSQRTVENYIATIKCKLSCSSKVELIQEA 254 >gi|302531315|ref|ZP_07283657.1| two-component system response regulator [Streptomyces sp. AA4] gi|302440210|gb|EFL12026.1| two-component system response regulator [Streptomyces sp. AA4] Length = 218 Score = 42.4 bits (98), Expect = 0.047, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G T+ +IAE+L LS TV ++ S KL NR++ AI G Sbjct: 155 RLTDRETDVLRLVAKGLTARQIAERLVLSHRTVENHVQSTLRKLQLHNRVELARYAIEHG 214 >gi|295839171|ref|ZP_06826104.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|197695622|gb|EDY42555.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 201 Score = 42.4 bits (98), Expect = 0.047, Method: Compositional matrix adjust. Identities = 29/66 (43%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + A+ L RE L+LA G IA +L LS TV YL SA VKL A NR+ A+ A Sbjct: 136 ATAQPLAPRELEVLRLAAVGEDVAAIACRLFLSRGTVRNYLSSAVVKLGARNRMDAVRIA 195 Query: 229 IRFGYI 234 G+I Sbjct: 196 REEGWI 201 >gi|297582617|ref|YP_003698397.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141074|gb|ADH97831.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 218 Score = 42.4 bits (98), Expect = 0.047, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++TERET+ + G G +++EI+E+L LSV TV + KL+ +R Q AIR G Sbjct: 155 DITERETTVIACVGRGLSNKEISEELYLSVGTVKNLISVILHKLELRDRTQLAIYAIRSG 214 Query: 233 Y 233 + Sbjct: 215 F 215 >gi|329947896|ref|ZP_08294828.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523520|gb|EGF50618.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 203 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE LQ A G + EIA +L L TV YL SA K A NR +A A G+ Sbjct: 143 LTDREKEVLQAAATGADAREIAARLHLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGW 202 Query: 234 I 234 + Sbjct: 203 L 203 >gi|324991970|gb|EGC23892.1| DNA-binding response regulator [Streptococcus sanguinis SK405] Length = 210 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 3/111 (2%) Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 +PV L +GY++ TS E ++ A + + + A ++ +E + +LT R Sbjct: 90 YPV-LDAGAHGYMLKTSSAEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 E L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A Sbjct: 149 ERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYA 199 >gi|300088612|ref|YP_003759134.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528345|gb|ADJ26813.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 227 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 26/59 (44%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L L G T++EIA KLGL+ TV +G KL+A NR QA A + G Sbjct: 167 LKSREKQVLDLIVKGLTNKEIAMKLGLAEVTVKKIIGHLLHKLNAANRTQAALAAKQLG 225 >gi|227819439|ref|YP_002823410.1| two-component system response regulator [Sinorhizobium fredii NGR234] gi|227338438|gb|ACP22657.1| putative two-component system response regulator [Sinorhizobium fredii NGR234] Length = 226 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +R S + LT RE +LA +G S EIA +LG++ TV +L S KLD R++ Sbjct: 156 ERRSVMQKLTPRELEISRLAAEGLRSREIAARLGITPGTVKLHLHSVYSKLDITTRVE 213 >gi|77463659|ref|YP_353163.1| two component transcriptional regulator, LuxR [Rhodobacter sphaeroides 2.4.1] gi|221639502|ref|YP_002525764.1| LuxR family two component transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332558515|ref|ZP_08412837.1| Two component transcriptional regulator, LuxR family protein [Rhodobacter sphaeroides WS8N] gi|77388077|gb|ABA79262.1| two component transcriptional regulator, LuxR [Rhodobacter sphaeroides 2.4.1] gi|221160283|gb|ACM01263.1| Two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides KD131] gi|332276227|gb|EGJ21542.1| Two component transcriptional regulator, LuxR family protein [Rhodobacter sphaeroides WS8N] Length = 210 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 8/110 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLTERETSCLQL 184 +G V+ T+ L N + G Y LEL + R S+ LTE+E + Sbjct: 105 SGIVLKTTPVRSLGNAIRFMHAGEHYLP----LELARDRRQAPDSSGGRLTEKEMLVMSY 160 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++EIA L L+ T+ ++ S KL A NR QA+ A G I Sbjct: 161 LAEGRQNKEIAHGLNLAEPTIKMHVKSICKKLGATNRTQAVVTARNLGII 210 >gi|21222055|ref|NP_627834.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|256786856|ref|ZP_05525287.1| two-component system regulator [Streptomyces lividans TK24] gi|289770751|ref|ZP_06530129.1| two-component system regulator [Streptomyces lividans TK24] gi|4753864|emb|CAB42027.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] gi|289700950|gb|EFD68379.1| two-component system regulator [Streptomyces lividans TK24] Length = 228 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 4/90 (4%) Query: 149 AHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 A G ++I +F L + + + LTERET L L G ++ EIA++L ++ T Sbjct: 134 APGITRRLIAEFSRLDDRPRAPLKARVGELTERETEVLALIAQGLSNAEIAQRLVVAEQT 193 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++G VKL +R QA A G + Sbjct: 194 VKTHVGRILVKLGLRDRTQAAVFAYESGLV 223 >gi|327472699|gb|EGF18126.1| DNA-binding response regulator [Streptococcus sanguinis SK408] Length = 210 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 +PV L +GY++ TS E ++ A + + + A ++ +E + +LT R Sbjct: 90 YPV-LDAGAHGYMLKTSSTEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 149 ERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 >gi|325695228|gb|EGD37129.1| DNA-binding response regulator [Streptococcus sanguinis SK150] Length = 210 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 +PV L +GY++ TS E ++ A + + + A ++ +E + +LT R Sbjct: 90 YPV-LDAGAHGYMLKTSSAEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 149 ERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 >gi|319644893|ref|ZP_07999126.1| hypothetical protein HMPREF1012_00159 [Bacillus sp. BT1B_CT2] gi|317392702|gb|EFV73496.1| hypothetical protein HMPREF1012_00159 [Bacillus sp. BT1B_CT2] Length = 214 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 9/113 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERETSC 181 +GYV+ S + +L ++ G + +I +L K+ ++ LT RE Sbjct: 100 HGYVLKNSHYRLLYQAIVEVYRGNLFYKTSVSQDIIDQWLNSEPKKPTSV--LTVREKEI 157 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ GY ++EIA+KL +SV TV + + KLD ++ + I AI+ Y+ Sbjct: 158 LRFIVLGYANKEIADKLSISVKTVENHKTNMMQKLDLDSKHELIQYAIKNKYL 210 >gi|320106448|ref|YP_004182038.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924969|gb|ADV82044.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 224 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 4/106 (3%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDG 188 GY++ T LA + I HG V T+ EL + SS A L+ RE L+ G Sbjct: 120 GYLLKTMLRKELA-QAIRAVHGGLRYVPTEIASELTRHFSSEA--LSARELEVLRSVSRG 176 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++++ +A+KL +S TV ++ + KL A +R+ A+ A+R G + Sbjct: 177 WSNKIVADKLAISEDTVKGHMRTILAKLGANDRLDAVMTALRRGIL 222 >gi|308067163|ref|YP_003868768.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681] gi|305856442|gb|ADM68230.1| Transcriptional regulatory protein degU (Protease production enhancer protein) [Paenibacillus polymyxa E681] Length = 217 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 60/115 (52%), Gaps = 9/115 (7%) Query: 129 NGYVIFTS--EFLMLANEVIIEAHGACY-----QVITDFLELFKKRSSAA--RNLTERET 179 +GY++ ++ E L+ A + + E Y ++++++L+ K+ A +L+ERE Sbjct: 100 SGYILKSAPHEELLAAIQSVAEGSAYLYPNATKRLMSEYLDKIKQEGIAGPYESLSEREK 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++EIAE L +SV TV ++ + KL R + + A++ G + Sbjct: 160 EILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLSLKTRPELVKFALKKGLL 214 >gi|325673433|ref|ZP_08153124.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325555454|gb|EGD25125.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 306 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L A G ++ IAE+L + TV +YL SA KLDA +R +A+ A R G Sbjct: 245 LSPREVDVLSHAALGCSNVVIAERLSVKPETVKSYLRSAMSKLDAHSRREAVVAARRLGL 304 Query: 234 I 234 + Sbjct: 305 L 305 >gi|300774649|ref|ZP_07084512.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] gi|300506464|gb|EFK37599.1| DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] Length = 214 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 52/103 (50%), Gaps = 14/103 (13%) Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARN------LTERE 178 GY++ L A E + E G+ Y TDF+ +L K ++ A+N L +RE Sbjct: 103 KGYLLKDMQPSILFQAIETVFE-KGSFY---TDFVAQKLLKVKTEEAKNASLLSELRDRE 158 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ A T +EIA+K+ LS T++ Y S VKLD NR Sbjct: 159 KEFIKWACSELTYKEIADKMCLSPKTIDGYRDSVFVKLDIKNR 201 >gi|221633789|ref|YP_002523015.1| response regulator uvrY [Thermomicrobium roseum DSM 5159] gi|221156063|gb|ACM05190.1| response regulator uvrY [Thermomicrobium roseum DSM 5159] Length = 221 Score = 42.4 bits (98), Expect = 0.048, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A+ L+ERE L+L GYT++EIA++L LS TV Y KL R + + A+R Sbjct: 153 AQLLSEREREVLRLTAAGYTAQEIADQLFLSPKTVETYRHRVMQKLGFSRRSELVRFALR 212 Query: 231 FGYI 234 G + Sbjct: 213 IGLL 216 >gi|226310381|ref|YP_002770275.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093329|dbj|BAH41771.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 199 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 33/60 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L DG ++EIA +L ++ TV Y+ KL NRI+AI + G+ Sbjct: 138 LTEREKEVLLLVADGKNTKEIASQLYITTGTVRNYISVILDKLGVSNRIEAIMHSKEKGW 197 >gi|297198108|ref|ZP_06915505.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714199|gb|EDY58233.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L + TV +++ KL A +R QA+ A G Sbjct: 157 QLTEREAEVLRLMTRGLSNAEIAARLVVGTETVKSHVSGVLAKLGARDRTQAVIAAYESG 216 Query: 233 YIC 235 ++ Sbjct: 217 FVA 219 >gi|167464395|ref|ZP_02329484.1| Two-component response regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 241 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + LT+RE L+L +G +++ I E L +S TV ++ S K++ +R QA+ Sbjct: 173 DSPSSPLTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQKMEVDDRTQAVII 232 Query: 228 AIRFGYIC 235 AI+ G++ Sbjct: 233 AIKNGWVT 240 >gi|148553593|ref|YP_001261175.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148498783|gb|ABQ67037.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 890 Score = 42.4 bits (98), Expect = 0.049, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S +L+ RE L++ DGY+++E+A +LGL T+ Y + KL+A R +A Sbjct: 815 RKISHGGPHLSPREREVLEMLADGYSAKEMANQLGLMESTLKGYRKALFSKLNAHTRSRA 874 Query: 225 IAKA 228 + A Sbjct: 875 LRAA 878 >gi|15614776|ref|NP_243079.1| two-component response regulator [Bacillus halodurans C-125] gi|10174832|dbj|BAB05932.1| two-component response regulator [Bacillus halodurans C-125] Length = 217 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R+LT RE L+ G +++EIA +L +S TV ++ + KLD +R QA AI++ Sbjct: 150 RDLTNREKDVLRELAKGQSNKEIASELHISEKTVKTHVSNIFWKLDVHDRTQAALFAIKY 209 Query: 232 G 232 G Sbjct: 210 G 210 >gi|329922778|ref|ZP_08278313.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941920|gb|EGG38204.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 200 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL + S N LTERE L L DG ++EIA +L ++ TV Y+ KL N Sbjct: 126 ELVDEAYSGEENPLTEREKEVLGLIADGKNTKEIANQLFITTGTVRNYISVILDKLGVSN 185 Query: 221 RIQAIAKAIRFGY 233 RI+AI + G+ Sbjct: 186 RIEAITRFKEKGW 198 >gi|329114860|ref|ZP_08243616.1| Transcriptional regulatory protein YvrH [Acetobacter pomorum DM001] gi|326695757|gb|EGE47442.1| Transcriptional regulatory protein YvrH [Acetobacter pomorum DM001] Length = 299 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 32/58 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 NLT RE L G T+ +IAE L +S TVN +L A VK+ NR A A+ ++ Sbjct: 238 NLTAREAEVLFWISKGKTNRDIAEILSISHRTVNKHLEQAYVKIGVENRASATARVLQ 295 >gi|309792191|ref|ZP_07686663.1| two-component transcriptional regulator, LuxR family protein [Oscillochloris trichoides DG6] gi|308225732|gb|EFO79488.1| two-component transcriptional regulator, LuxR family protein [Oscillochloris trichoides DG6] Length = 204 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 5/76 (6%) Query: 164 FKKRSSAARNL-----TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + +RS A NL +ERE +Q +GY++++IA +L LS+ TV Y A KL Sbjct: 127 YVQRSPATTNLLGSELSEREREVVQRVVEGYSNKDIALQLNLSIKTVETYRARALDKLGL 186 Query: 219 VNRIQAIAKAIRFGYI 234 R + + AI G++ Sbjct: 187 SGRAELVRYAIEQGWM 202 >gi|296268935|ref|YP_003651567.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091722|gb|ADG87674.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 221 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G +++EIAE+L L+ TV +LG KL +R QAI A G Sbjct: 154 LTAREREVLILVAKGLSNQEIAERLHLAEATVKTHLGRVLAKLRLRDRAQAIVYAYETGL 213 Query: 234 IC 235 + Sbjct: 214 VS 215 >gi|291444348|ref|ZP_06583738.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291347295|gb|EFE74199.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE+ L+L G +++EIA +L L+ TV ++G KLD +R QA+ A G Sbjct: 157 GLTPRESEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESG 216 Query: 233 YIC 235 + Sbjct: 217 LVT 219 >gi|284045809|ref|YP_003396149.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950030|gb|ADB52774.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 381 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 33/54 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+L +G T++EIA L +SV TV ++ S KL NR QA+A+ Sbjct: 315 LTRRELEVLRLVAEGRTNDEIATALVISVGTVKFHVSSILRKLRVGNRAQAVAR 368 >gi|239940914|ref|ZP_04692851.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239987390|ref|ZP_04708054.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 229 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE+ L+L G +++EIA +L L+ TV ++G KLD +R QA+ A G Sbjct: 161 GLTPRESEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESG 220 Query: 233 YIC 235 + Sbjct: 221 LVT 223 >gi|238893250|ref|YP_002917984.1| trans-acting regulatory protein of aco operon [Klebsiella pneumoniae NTUH-K2044] gi|238545566|dbj|BAH61917.1| trans-acting regulatory protein of aco operon [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 921 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE LQL +G ++EIA L +S TV ++ + KL +R QA+++A+ Sbjct: 860 LSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEM 917 >gi|241206011|ref|YP_002977107.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859901|gb|ACS57568.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 305 Score = 42.4 bits (98), Expect = 0.049, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ ++R S LT+RE+ L G + +I E LGLS TVN +L VKL NR Sbjct: 236 EVLRQRFS----LTQRESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENR 291 Query: 222 IQAIAKAIRFGY 233 A KA Y Sbjct: 292 ASAAVKATHVLY 303 >gi|328884159|emb|CCA57398.1| putative transcriptional regulatory protein [Streptomyces venezuelae ATCC 10712] Length = 350 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+E++ + L + G E IA LG+S+ TV+ + +L A +R +A A+A+R G Sbjct: 288 GLSEQQRAALHMLASGMKDERIARTLGVSLRTVSRMISELMQELGATSRFEAGARAVRLG 347 Query: 233 YI 234 ++ Sbjct: 348 WL 349 >gi|318059884|ref|ZP_07978607.1| response regulator [Streptomyces sp. SA3_actG] gi|318081229|ref|ZP_07988561.1| response regulator [Streptomyces sp. SA3_actF] Length = 199 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L+L +G + EIA KL S TV + T +L NR A+A A+R G Sbjct: 138 GLAPREADVLRLVAEGLDTGEIAGKLSYSERTVKNVMHGLTTRLHLRNRAHAVAYALRQG 197 Query: 233 YI 234 YI Sbjct: 198 YI 199 >gi|300787038|ref|YP_003767329.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796552|gb|ADJ46927.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 215 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 40/75 (53%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F L + S LT RE L L +G T++EI +LG+S +T ++ KL A Sbjct: 140 FDRLTGRGSGGGAALTARERETLDLLAEGATTDEIGARLGVSRNTTRNHVQRVLEKLGAR 199 Query: 220 NRIQAIAKAIRFGYI 234 ++++A+A A R G I Sbjct: 200 SKLEAVAVARREGLI 214 >gi|288936970|ref|YP_003441029.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Klebsiella variicola At-22] gi|288891679|gb|ADC59997.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Klebsiella variicola At-22] Length = 921 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE LQL +G ++EIA L +S TV ++ + KL +R QA+++A+ Sbjct: 860 LSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEM 917 >gi|284034798|ref|YP_003384729.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283814091|gb|ADB35930.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 216 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 5/79 (6%) Query: 162 ELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +L + R A R LT RE L L G G ++ EIA L +S HTV ++ + KL Sbjct: 135 DLTRNRPRAGRVAELDALTSREREILLLLGRGLSNAEIAAALTVSEHTVKTHVSNTLTKL 194 Query: 217 DAVNRIQAIAKAIRFGYIC 235 +R+QA+ A G I Sbjct: 195 GLRDRVQAVIAAYETGLIT 213 >gi|262203353|ref|YP_003274561.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262086700|gb|ACY22668.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 228 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERET L+L G T+ EIA LG+S TV +++ KLD +R AI A Sbjct: 163 LTERETDVLRLVARGRTNAEIAAGLGISEVTVKSHINHIFTKLDLRDRAAAIVYA 217 >gi|85708570|ref|ZP_01039636.1| two-component transcriptional regulator, LuxR family protein [Erythrobacter sp. NAP1] gi|85690104|gb|EAQ30107.1| two-component transcriptional regulator, LuxR family protein [Erythrobacter sp. NAP1] Length = 236 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 5/121 (4%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN 173 G P+ ++ Y F +FL ++V E+ G + QV + + + A Sbjct: 116 GFGIPLYGRNARDAYASF--DFLKHVDDVAPESIGMIRSLSQVAHQRVVILVEHKLDAPA 173 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L A G + IA L +S T Y KLD +R+ A+ KA+R G Sbjct: 174 LSEREVEVLTWAARGKSLSAIATILDISPDTAKTYSKRIYAKLDVSDRVGAVVKALRMGL 233 Query: 234 I 234 + Sbjct: 234 V 234 >gi|304321066|ref|YP_003854709.1| Two Component Transcriptional Regulator, LuxR family protein [Parvularcula bermudensis HTCC2503] gi|303299968|gb|ADM09567.1| Two Component Transcriptional Regulator, LuxR family protein [Parvularcula bermudensis HTCC2503] Length = 226 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A LT R+ G+ +++EIA+ LGLS++TV ++ S KL+ NR + A A Sbjct: 156 AAYEKLTPRQKEIFIQLGEEASNQEIADNLGLSINTVRVHIQSIATKLNERNRTKIAALA 215 Query: 229 IRFG 232 +R G Sbjct: 216 LRIG 219 >gi|209550642|ref|YP_002282559.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536398|gb|ACI56333.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 305 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ ++R S LT+RE+ L G + +I E LGLS TVN +L VKL NR Sbjct: 236 EMLRQRFS----LTQRESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENR 291 Query: 222 IQAIAKA 228 A KA Sbjct: 292 ASAAVKA 298 >gi|78778542|ref|YP_396654.1| LuxR family transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712041|gb|ABB49218.1| transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9312] Length = 92 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L DG T++EIA KL +S TV+ ++ + K + NR+ + A+ G Sbjct: 16 LSTREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDNGK 75 Query: 234 IC 235 IC Sbjct: 76 IC 77 >gi|325686912|gb|EGD28936.1| DNA-binding response regulator [Streptococcus sanguinis SK72] Length = 210 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 +PV L +GY++ TS E ++ A + + + A ++ +E + +LT R Sbjct: 90 YPV-LDAGAHGYMLKTSSAEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 149 ERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 >gi|324994067|gb|EGC25981.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|327459273|gb|EGF05619.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327490491|gb|EGF22272.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] Length = 210 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 +PV L +GY++ TS E ++ A + + + A ++ +E + +LT R Sbjct: 90 YPV-LDAGAHGYMLKTSSAEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 149 ERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 >gi|315646876|ref|ZP_07899991.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Paenibacillus vortex V453] gi|315277806|gb|EFU41130.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Paenibacillus vortex V453] Length = 100 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T+RE L L +G ++EEIA+ L +S TV Y+ + KL+ NR+QA+ K Sbjct: 36 TKRELELLVLIMEGSSNEEIAQMLMISTGTVKRYIHNIYQKLEVKNRVQAVKK 88 >gi|309799510|ref|ZP_07693740.1| DNA-binding response regulator [Streptococcus infantis SK1302] gi|308116866|gb|EFO54312.1| DNA-binding response regulator [Streptococcus infantis SK1302] Length = 199 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L G +++EIA+KL LS TV Y+ + KL+A NR Sbjct: 127 ELMEVMMTHPNPLTEQEVAVLHGVAQGLSNQEIADKLYLSNGTVRNYMTNILSKLNASNR 186 Query: 222 IQAIAKAIRFGYI 234 +A A G++ Sbjct: 187 TEAAKTAEEEGWL 199 >gi|289642054|ref|ZP_06474207.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508127|gb|EFD29073.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 221 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L DGY++ IA +L L+ TV YL KL+ +R +A A R G Sbjct: 159 ELTERERVVLCLVADGYSTAAIAGELALTTKTVRNYLSKIFAKLEVRDRAEAAVIARRAG 218 >gi|255326927|ref|ZP_05368003.1| two component transcriptional regulator, LuxR family [Rothia mucilaginosa ATCC 25296] gi|255296144|gb|EET75485.1| two component transcriptional regulator, LuxR family [Rothia mucilaginosa ATCC 25296] Length = 210 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 26/66 (39%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + A LTERE L+ A G T+++IA L LS TV YL +A K A R A+ A Sbjct: 145 TGASPLTEREAQVLREAASGGTAQQIASALFLSAGTVRNYLSAAMAKTGASTRQDAVRIA 204 Query: 229 IRFGYI 234 G++ Sbjct: 205 TENGWL 210 >gi|239944068|ref|ZP_04696005.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239990520|ref|ZP_04711184.1| transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291447534|ref|ZP_06586924.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291350481|gb|EFE77385.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 201 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 16/97 (16%) Query: 154 YQVITDFLELFKKRSSAARNLTE----------------RETSCLQLAGDGYTSEEIAEK 197 Y+ + D E+ K + R++ E RE S L +A +G IA + Sbjct: 105 YRPVDDLSEVMHKLADGGRHIDESLAFSLLQVADMPLSPRELSVLSMAEEGDNVAGIAGR 164 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L+ TV YL +A K A NR+ AI +A G+I Sbjct: 165 LHLTPGTVRNYLAAAIRKSGARNRLDAIRRAKEAGWI 201 >gi|146277715|ref|YP_001167874.1| two component LuxR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145555956|gb|ABP70569.1| two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides ATCC 17025] Length = 210 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 50/110 (45%), Gaps = 8/110 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLTERETSCLQL 184 +G V+ T+ L N + G Y LEL + R S+ LTE+E + Sbjct: 105 SGIVLKTTPVRSLGNAIRFMHAGEHYLP----LELARDRRQAPDSSGGRLTEKEMLVMSY 160 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++EIA L L+ T+ ++ S KL A NR QA+ A G I Sbjct: 161 LAEGRQNKEIAHGLNLAEPTIKMHVKSICKKLGATNRTQAVVTARNLGII 210 >gi|119485367|ref|ZP_01619695.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119457123|gb|EAW38249.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 250 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G ++ EI+EKL ++V TV ++ S KL +R QA +A+R G Sbjct: 189 LTERELEVLELIVGGCSNAEISEKLYVTVGTVKTHVRSILNKLCVEDRTQAAVRALRSGL 248 Query: 234 I 234 + Sbjct: 249 V 249 >gi|222055510|ref|YP_002537872.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32] gi|221564799|gb|ACM20771.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32] Length = 248 Score = 42.4 bits (98), Expect = 0.050, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L K ++ L++RE L G +S +I+ L +SV TV ++ + VKL+AV+R Sbjct: 174 LSKTKAPVNFELSKREIEVLNWVKKGKSSWDISVILAISVRTVKFHVENIMVKLNAVSRT 233 Query: 223 QAIAKAIRFGYI 234 A+A A+ G I Sbjct: 234 HAVAIALSAGVI 245 >gi|327462458|gb|EGF08783.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] gi|332362992|gb|EGJ40781.1| DNA-binding response regulator [Streptococcus sanguinis SK49] gi|332364570|gb|EGJ42339.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] gi|332366354|gb|EGJ44105.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 210 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 +PV L +GY++ TS E ++ A + + + A ++ +E + +LT R Sbjct: 90 YPV-LDAGAHGYMLKTSSAEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 149 ERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 >gi|313806422|gb|EFS44929.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] Length = 218 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE +G T++ IA +L +S TV A+L + KLD V+R++ R GY Sbjct: 156 LTDREREVAIAVAEGLTNDAIAARLNVSASTVKAHLSTIQTKLDVVSRVRIAVLVERAGY 215 Query: 234 IC 235 + Sbjct: 216 LA 217 >gi|290958642|ref|YP_003489824.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260648168|emb|CBG71276.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 13/109 (11%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK-KRSSAARNL-----T 175 +G+++ + LA+ V + A G ++IT+F +L + R SAA L T Sbjct: 100 SGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSKLVQAPRPSAATQLAYGELT 159 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +RET L L G ++ EIAE+L ++ T+ ++ VKL +R QA Sbjct: 160 DRETEVLVLIAQGLSNSEIAERLVVAESTIKTHVSRVLVKLGLRDRTQA 208 >gi|182440060|ref|YP_001827779.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780729|ref|ZP_08239994.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178468576|dbj|BAG23096.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326661062|gb|EGE45908.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 216 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE + L+L G ++ EIA L + TV ++ S KL A +R QA+ A G++ Sbjct: 154 TEREAAVLRLMARGLSNAEIAAALVVGTETVKTHVSSVLAKLGARDRTQAVIAAYESGFV 213 Query: 235 C 235 Sbjct: 214 A 214 >gi|134103684|ref|YP_001109345.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] gi|133916307|emb|CAM06420.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 218 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L G ++ E+A +L LS T+ ++G KLD +R+QA+ A G Sbjct: 153 LTEREREVLVLVAKGLSNAELASRLFLSEATIKTHVGRILSKLDIRDRVQAVVLAYETGL 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|126653823|ref|ZP_01725686.1| hypothetical protein BB14905_21773 [Bacillus sp. B14905] gi|126589660|gb|EAZ83797.1| hypothetical protein BB14905_21773 [Bacillus sp. B14905] Length = 229 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 69/147 (46%), Gaps = 6/147 (4%) Query: 85 LPIIWQSIQEETVIESSG-----QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 PII+ +I E+ +G +S++ A + P+ +G + GY+ T + Sbjct: 76 FPIIYSAIVEKKAKFCTGMDYLKNISIKYSISSQNNAFLIVPIFIGHYVFGYICSTQIDM 135 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 E +++ A VI + + + L++RE ++ G +++E+A+ + Sbjct: 136 DKITEKLLDDFTAFGNVIGQLI-IQARDHKKGSILSKRELEVMRQIALGDSTKEMADFMN 194 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIA 226 LS T+N Y+ SA KL A NR AI+ Sbjct: 195 LSELTINQYVKSAIKKLQAKNRTHAIS 221 >gi|158318665|ref|YP_001511173.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158114070|gb|ABW16267.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 244 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 30/55 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A L +RE LQL DG T+ +I +LGLS TV Y+ S KL +R QA Sbjct: 180 AMATLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQA 234 >gi|328945025|gb|EGG39181.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] Length = 210 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 +PV L +GY++ TS E ++ A + + + A ++ +E + +LT R Sbjct: 90 YPV-LDAGAHGYMLKTSSAEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 149 ERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 >gi|294501833|ref|YP_003565533.1| two-component response regulator DegU [Bacillus megaterium QM B1551] gi|295707182|ref|YP_003600257.1| two-component response regulator DegU [Bacillus megaterium DSM 319] gi|126540400|emb|CAL44587.1| DegU protein [Bacillus megaterium DSM 319] gi|294351770|gb|ADE72099.1| two-component response regulator DegU [Bacillus megaterium QM B1551] gi|294804841|gb|ADF41907.1| two-component response regulator DegU [Bacillus megaterium DSM 319] Length = 227 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ + K++ +R QA+ AI+ G+ Sbjct: 164 LTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGW 223 Query: 234 I 234 + Sbjct: 224 V 224 >gi|123967708|ref|YP_001008566.1| LuxR family regulatory protein [Prochlorococcus marinus str. AS9601] gi|126695511|ref|YP_001090397.1| LuxR family regulatory protein [Prochlorococcus marinus str. MIT 9301] gi|123197818|gb|ABM69459.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. AS9601] gi|126542554|gb|ABO16796.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus str. MIT 9301] Length = 92 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L DG T++EIA KL +S TV+ ++ + K + NR+ + A+ G Sbjct: 16 LSAREMEIIDLVADGLTNQEIAVKLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDNGK 75 Query: 234 IC 235 IC Sbjct: 76 IC 77 >gi|159898087|ref|YP_001544334.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891126|gb|ABX04206.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 257 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L+ G T+++IA+ L +S TV ++ S KL +R QA+ A+R G+ Sbjct: 167 LSDREIEVLEHIASGATNKDIADALKISTQTVKNHISSILRKLSLNDRTQAVLYALRRGW 226 Query: 234 I 234 I Sbjct: 227 I 227 >gi|88809905|ref|ZP_01125411.1| Transcriptional regulator, contains HTH motif [Synechococcus sp. WH 7805] gi|88786289|gb|EAR17450.1| Transcriptional regulator, contains HTH motif [Synechococcus sp. WH 7805] Length = 97 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE ++L +G T++EIAE+L +S TV+ ++ + K + NR+ + A+ G Sbjct: 19 LSARELEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMDHGK 78 Query: 234 IC 235 IC Sbjct: 79 IC 80 >gi|47569107|ref|ZP_00239795.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|47554178|gb|EAL12541.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] Length = 132 Score = 42.4 bits (98), Expect = 0.051, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LTERE+ L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 62 KKEQPLHEELTERESEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 121 Query: 225 IAKAIR 230 + A R Sbjct: 122 VIYAFR 127 >gi|307329696|ref|ZP_07608853.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306884636|gb|EFN15665.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 231 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G +++EIAE++ LS TV A++ A KL+A +R Q + A R G Sbjct: 158 LTPREREMVALVATGLSNQEIAEQMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTG 216 >gi|302548874|ref|ZP_07301216.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302466492|gb|EFL29585.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 225 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE + DG + EIA++L +S+ TV A+ GS KL NR+Q Sbjct: 166 LTERELETARAIADGLGNPEIAQRLRISIATVKAHTGSLFAKLTVENRVQ 215 >gi|254777627|ref|ZP_05219143.1| hypothetical protein MaviaA2_23561 [Mycobacterium avium subsp. avium ATCC 25291] Length = 218 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 8/114 (7%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK-----RSSAARNLTERETSC 181 G+V+ S L V A G Y V + L ++K R +A LT RE Sbjct: 103 GFVLKDSSAEELIRAVRAVARGEGYLDPAVTSRVLTTYRKAAPGPRGAAIAELTTRELDV 162 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L G G ++ EIA++L +S TV +++G KLD +R AI A G + Sbjct: 163 LTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA 216 >gi|296141810|ref|YP_003649053.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029944|gb|ADG80714.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 216 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 40/64 (62%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A LT +E + L+L G+G T+++IAE++ L+ TV ++ KL NR+QA + Sbjct: 145 SLAQAGLTGQEEAVLELLGEGLTNKQIAERMFLAEKTVRNHVTGVLAKLGVENRVQAALR 204 Query: 228 AIRF 231 A+++ Sbjct: 205 AVQW 208 >gi|254519325|ref|ZP_05131381.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] gi|226913074|gb|EEH98275.1| two-component system response regulator [Clostridium sp. 7_2_43FAA] Length = 226 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE + L G ++EIAEKL LS TV Y+ S K++ +R+QA AIR Sbjct: 158 LTNRELNILYEISKGLKNKEIAEKLFLSEKTVKNYITSIFKKIEVEDRVQATIYAIR 214 >gi|149925601|ref|ZP_01913865.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] gi|149825718|gb|EDM84926.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] Length = 237 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L++ G+ EIA+ LG+S++T++ Y+ KL +R A+ +A G Sbjct: 172 LSEREQQVLEMVAKGFMQAEIADILGVSINTISTYIKRIYKKLAVNSRTSAVHRANALGL 231 Query: 234 I 234 I Sbjct: 232 I 232 >gi|158520046|ref|YP_001527916.1| two component LuxR family transcriptional regulator [Desulfococcus oleovorans Hxd3] gi|158508872|gb|ABW65839.1| two component transcriptional regulator, LuxR family [Desulfococcus oleovorans Hxd3] Length = 214 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 8/95 (8%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY--QVITDFLE------LFKKRSSAARNLTERETSC 181 GY+I F LA V++ G Y I D + + + + LTERE Sbjct: 100 GYLIKDCAFEELARAVVVVHRGETYLSPAIADTVRKVLVTRIDQDPLTRVEELTERERQV 159 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LQ+ +G +++IAE L +SV TV Y S KL Sbjct: 160 LQMIAEGIKTKDIAESLHISVKTVETYRSSIMQKL 194 >gi|116253485|ref|YP_769323.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115258133|emb|CAK09234.1| putative LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 305 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 4/72 (5%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ ++R S LT+RE+ L G + +I E LGLS TVN +L VKL NR Sbjct: 236 EVLRQRFS----LTQRESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENR 291 Query: 222 IQAIAKAIRFGY 233 A KA Y Sbjct: 292 ASAAVKATHVLY 303 >gi|23465962|ref|NP_696565.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|312132566|ref|YP_003999905.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|317482474|ref|ZP_07941491.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|322691391|ref|YP_004220961.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|23326675|gb|AAN25201.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|311773506|gb|ADQ02994.1| Putative response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|316916134|gb|EFV37539.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|320456247|dbj|BAJ66869.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] Length = 241 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 7/78 (8%) Query: 152 ACYQVITDFLELFKKRS--SAARNL----TERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A + + D L + + RS AR L +RE + LA +GYT+ EIA ++ +S T Sbjct: 151 ASQKQLIDDLSVTRPRSRRDEARALLDALPDREREAVMLAAEGYTNAEIASRMFISERTA 210 Query: 206 NAYLGSATVKLDAVNRIQ 223 A+L SA KLD + R+Q Sbjct: 211 KAHLSSAANKLD-MGRVQ 227 >gi|117927726|ref|YP_872277.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648189|gb|ABK52291.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 225 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 17/114 (14%) Query: 129 NGYVIFTSEFLMLANEVI-----IEAHGACYQVITDFLELFKKRSSAARN--------LT 175 +GYV+ + NE++ + A G+ +T L + R A R LT Sbjct: 105 SGYVLKQ----IRGNEIVSAVRTVAAGGSLLDPVTTTRVLQRLRDQAERPEPGNPYAALT 160 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E+E L+L G+G T+ +I E+L L+ TV Y+ S KL R QA A+ Sbjct: 161 EQERRVLELIGEGLTNRQIGERLFLAEKTVKNYVSSILAKLGLQRRTQAAVLAV 214 >gi|312962962|ref|ZP_07777448.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311282731|gb|EFQ61326.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 833 Score = 42.4 bits (98), Expect = 0.052, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE LQL G ++ +IA++L +S+HTV + KL R QA+AKA G Sbjct: 772 LSQRELEVLQLIALGSSNLQIADRLFISLHTVKTHARRIHSKLGVERRTQAVAKAKTLGL 831 Query: 234 I 234 + Sbjct: 832 M 832 >gi|300778185|ref|ZP_07088043.1| LuxR family two component transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300503695|gb|EFK34835.1| LuxR family two component transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 209 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 4/76 (5%) Query: 163 LFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + KK+S+ N LT RE L A G T+ ++AEKL +S HTV ++ + K Sbjct: 132 VLKKKSADGLNQVPKLTRREKEILAEAAKGLTTNQMAEKLFISPHTVESHRKNLIEKFQT 191 Query: 219 VNRIQAIAKAIRFGYI 234 N AI AI +G I Sbjct: 192 SNLSSAIRLAIEYGLI 207 >gi|189466948|ref|ZP_03015733.1| hypothetical protein BACINT_03330 [Bacteroides intestinalis DSM 17393] gi|189435212|gb|EDV04197.1| hypothetical protein BACINT_03330 [Bacteroides intestinalis DSM 17393] Length = 255 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE LQL G S+EIA L +S+HTV+ + + KL N I+AI + G Sbjct: 193 HLTQRELEILQLIQKGLLSKEIAYNLRISIHTVHIHRQNLLHKLGVQNSIEAINAGLELG 252 >gi|163839051|ref|YP_001623456.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952527|gb|ABY22042.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 158 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L+ G G+T+++IA +LG++ TV ++ KLD V+R+QA Sbjct: 97 ELTARELEVLRAVGAGWTNQQIANRLGIAETTVKTHVSRIFNKLDLVSRVQA 148 >gi|29831078|ref|NP_825712.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608192|dbj|BAC72247.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 224 Score = 42.4 bits (98), Expect = 0.052, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA++L ++ TV ++G VKL +R QA A G Sbjct: 158 ELTERETEVLALIAQGMSNAEIADRLVVAEQTVKTHVGRILVKLSLRDRTQAAVFAYESG 217 Query: 233 YI 234 + Sbjct: 218 LV 219 >gi|322382401|ref|ZP_08056304.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153618|gb|EFX45997.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 230 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + LT+RE L+L +G +++ I E L +S TV ++ S K++ +R QA+ Sbjct: 162 DSPSSPLTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQKMEVDDRTQAVII 221 Query: 228 AIRFGYIC 235 AI+ G++ Sbjct: 222 AIKNGWVT 229 >gi|295697536|ref|YP_003590774.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295413138|gb|ADG07630.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 278 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE LQL +G ++ +IA+ L LS TV ++ S KL +R QA+ A+R G+ Sbjct: 215 LTKREFEVLQLLAEGRSNRDIAKALVLSEKTVKNHVASILDKLVVRDRTQAVLVALRRGW 274 Query: 234 IC 235 + Sbjct: 275 VT 276 >gi|290958644|ref|YP_003489826.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260648170|emb|CBG71278.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 10/93 (10%) Query: 149 AHGACYQVITDFLEL-------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 A G ++I +F L K+R +LTERET L L G ++ EIA+ L ++ Sbjct: 130 APGVTRRLIAEFSRLGTAPRAPLKERVG---DLTERETEVLSLIAQGLSNAEIAQSLVVA 186 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++G VKL +R QA A G + Sbjct: 187 EQTVKTHVGRILVKLGLRDRTQAAVFAYESGLV 219 >gi|256378098|ref|YP_003101758.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922401|gb|ACU37912.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 225 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L G ++ E+AE++ ++ TV +LG KL +R+QA+ A G Sbjct: 161 LTEREREVLVLVARGLSNVELAERMHVAEATVKTHLGRVLTKLGLRDRVQAVVLAYELGL 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|229541561|ref|ZP_04430621.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229325981|gb|EEN91656.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 227 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I + L +S TV ++ + KL +R QA+ AI+ G+ Sbjct: 164 LTPRECEVLQLLADGKSNRAIGDALYISEKTVKNHVSNILQKLKVKDRTQAVVTAIKNGW 223 Query: 234 I 234 + Sbjct: 224 V 224 >gi|219848672|ref|YP_002463105.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542931|gb|ACL24669.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 219 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 35/70 (50%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 Q+ T L + + LT RE L+L GYT++EI E L LS+ TV +L Sbjct: 140 QLATPTTSLPTPSAEPSIALTPRERDILRLLAQGYTNQEIGEALALSIGTVKNHLSVIFA 199 Query: 215 KLDAVNRIQA 224 KL +R QA Sbjct: 200 KLAVRDRTQA 209 >gi|166364716|ref|YP_001656989.1| two-component response regulator [Microcystis aeruginosa NIES-843] gi|159030578|emb|CAO88241.1| luxR [Microcystis aeruginosa PCC 7806] gi|166087089|dbj|BAG01797.1| two-component response regulator [Microcystis aeruginosa NIES-843] Length = 210 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L +G ++ EIAE+L LS +T+ ++ KL +R+QA A+R G Sbjct: 150 LSEREMEVLKLIVEGKSNAEIAEQLYLSTNTIKTHVRGIMNKLAVDDRVQAAVIALRSGI 209 Query: 234 I 234 + Sbjct: 210 V 210 >gi|260905137|ref|ZP_05913459.1| putative LuxR family transcriptional regulator [Brevibacterium linens BL2] Length = 293 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RET L G+++ IAE LGL TV +YL +A VKL A R +A++ A G Sbjct: 231 SLSPRETDILSHVALGWSNARIAEGLGLRESTVKSYLNTAMVKLSAGTRHEAVSIARSAG 290 Query: 233 YI 234 + Sbjct: 291 AL 292 >gi|89902955|ref|YP_525426.1| ATP-dependent transcription regulator LuxR [Rhodoferax ferrireducens T118] gi|89347692|gb|ABD71895.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Rhodoferax ferrireducens T118] Length = 894 Score = 42.4 bits (98), Expect = 0.053, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 34/68 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ A LTERE L L G +++E+A + +S TV +L S KL R QA+ Sbjct: 825 KTGVAGTLTERERDVLMLVASGQSNKEVARSMNISAETVKTHLKSIFGKLGVQQREQAVV 884 Query: 227 KAIRFGYI 234 A G I Sbjct: 885 LARAVGLI 892 >gi|332358064|gb|EGJ35897.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] Length = 210 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 3/113 (2%) Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 +PV L +GY++ TS E ++ A + + + A ++ +E + +LT R Sbjct: 90 YPV-LDAGAHGYMLKTSSAEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 149 ERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQ 201 >gi|237797654|ref|ZP_04586115.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020504|gb|EGI00561.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 240 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 ++R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 175 SSRGLTHRELEVLQWARDGKTAWEISMIREVSESTVKFHLKTIYSKLGVANRAQAVGEAL 234 Query: 230 RFGYI 234 G I Sbjct: 235 CRGLI 239 >gi|227547640|ref|ZP_03977689.1| transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227211895|gb|EEI79791.1| transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 252 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 7/78 (8%) Query: 152 ACYQVITDFLELFKKRS--SAARNL----TERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A + + D L + + RS AR L +RE + LA +GYT+ EIA ++ +S T Sbjct: 162 ASQKQLIDDLSVTRPRSRRDEARALLDALPDREREAVMLAAEGYTNAEIASRMFISERTA 221 Query: 206 NAYLGSATVKLDAVNRIQ 223 A+L SA KLD + R+Q Sbjct: 222 KAHLSSAANKLD-MGRVQ 238 >gi|197123919|ref|YP_002135870.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K] gi|220918688|ref|YP_002493992.1| transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] gi|196173768|gb|ACG74741.1| transcriptional regulator, LuxR family [Anaeromyxobacter sp. K] gi|219956542|gb|ACL66926.1| transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 178 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ A LT+RE L DG S E+AE+LG++ TV ++L + KL NR++ Sbjct: 115 ATPADGLTQREREVALLVADGLRSREVAERLGIASQTVKSHLKTIFDKLGVRNRVE 170 >gi|21240910|ref|NP_640492.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106187|gb|AAM35028.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 210 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F+ + + +ERE + L+L GY+++EIA L L+ TV Y+ + KL +R + Sbjct: 140 FRDQQAPRETFSEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGIRDRTR 199 Query: 224 AIAKAIRFGYI 234 A+ KAI I Sbjct: 200 AVLKAITLRVI 210 >gi|27377555|ref|NP_769084.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27350699|dbj|BAC47709.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 249 Score = 42.4 bits (98), Expect = 0.053, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE + L DG T IA KLG+S TV ++L KL+ NR IA+ R G Sbjct: 189 QLTDRENQIVGLVADGLTDGIIARKLGISYWTVRSHLDHVFEKLETPNRATLIARIHREG 248 >gi|317130322|ref|YP_004096604.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475270|gb|ADU31873.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 232 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ + K+ +R QA+ AI+ G+ Sbjct: 169 LTRRECEVLQLMTDGKSNRAIGEALYISEKTVKNHVSNILQKMGMNDRTQAVVDAIKNGW 228 Query: 234 I 234 + Sbjct: 229 V 229 >gi|84501129|ref|ZP_00999364.1| autoinducer-binding transcriptional regulator, LuxR family protein [Oceanicola batsensis HTCC2597] gi|84391196|gb|EAQ03614.1| autoinducer-binding transcriptional regulator, LuxR family protein [Oceanicola batsensis HTCC2597] Length = 269 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + AR LT+R+ LQ GDG T+ +IA +GL+ TV +L A L+ QA+ K Sbjct: 198 AGPARGLTKRQREALQWVGDGKTTADIALLMGLTSATVEKHLRLAREALNVETTAQAVLK 257 Query: 228 A 228 A Sbjct: 258 A 258 >gi|317495606|ref|ZP_07953974.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914420|gb|EFV35898.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 199 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+++ET L+ G +++EIA +L LS T Y+ + KLD NR +A+ KA G+ Sbjct: 139 LSKQETLLLKKVKHGLSNKEIAAELFLSEGTTRNYISNILTKLDCKNRTEAVKKATEKGW 198 Query: 234 I 234 I Sbjct: 199 I 199 >gi|291004781|ref|ZP_06562754.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 212 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L G ++ E+A +L LS T+ ++G KLD +R+QA+ A G Sbjct: 147 LTEREREVLVLVAKGLSNAELASRLFLSEATIKTHVGRILSKLDIRDRVQAVVLAYETGL 206 Query: 234 I 234 + Sbjct: 207 V 207 >gi|282864894|ref|ZP_06273948.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560319|gb|EFB65867.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 210 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 40/66 (60%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + A+ LT+RE LQL G+G ++++I+++L LS TV ++L KL +R Sbjct: 137 LMDRMRTPAQALTKRELEVLQLVGEGLSNQQISKRLFLSQATVKSHLVHIYAKLGVDSRT 196 Query: 223 QAIAKA 228 A+A A Sbjct: 197 SAVAAA 202 >gi|269836233|ref|YP_003318461.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785496|gb|ACZ37639.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 223 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 41/72 (56%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L K ++ + LT+RE + L+L +GY + +IAE+L L+ TV L + K+ +R Sbjct: 145 LTKTPTNTRQQLTQRELTLLRLLANGYNNRQIAEQLQLAESTVKNNLSALFQKIGVRDRT 204 Query: 223 QAIAKAIRFGYI 234 QA+ AI G + Sbjct: 205 QAVLFAISQGLV 216 >gi|126737738|ref|ZP_01753468.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. SK209-2-6] gi|126721131|gb|EBA17835.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. SK209-2-6] Length = 251 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 32/57 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT+R+ LQ GDG T+++IA +GL+ TV +L A L QA+ KA Sbjct: 184 RTLTKRQKEALQWVGDGKTTQDIALLMGLTAATVEKHLRLARESLSVETTAQAVLKA 240 >gi|170728214|ref|YP_001762240.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169813561|gb|ACA88145.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 221 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE + +QL G + EIA+ L +S HTV A++ S K + NR++ + A +G Sbjct: 156 LTKRERTIIQLVSSGARNREIADNLCISEHTVKAHISSIFRKTHSRNRVELLRWAQTYG 214 >gi|16330324|ref|NP_441052.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1652813|dbj|BAA17732.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 226 Score = 42.4 bits (98), Expect = 0.054, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE L+L +G +++EIA+ L LS +T+ ++ KL +R+QA A+R G Sbjct: 165 SLSEREIDVLKLIVEGKSNQEIAQTLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSG 224 Query: 233 YI 234 + Sbjct: 225 LV 226 >gi|303257078|ref|ZP_07343092.1| DNA-binding response regulator FixJ [Burkholderiales bacterium 1_1_47] gi|302860569|gb|EFL83646.1| DNA-binding response regulator FixJ [Burkholderiales bacterium 1_1_47] Length = 208 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R LT RE L L +G T++EIA++L LSV T+ + A+ KL A + + I +A+ Sbjct: 143 RQLTNREKEVLSLVAEGLTNKEIADRLELSVPTIKMHRSRASEKL-ATDSVAEITRAL 199 >gi|254417388|ref|ZP_05031130.1| HTH DNA binding domain family [Microcoleus chthonoplastes PCC 7420] gi|196175823|gb|EDX70845.1| HTH DNA binding domain family [Microcoleus chthonoplastes PCC 7420] Length = 94 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 40/69 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +S + +L++RE + L G T++EIA+ L +S TV+ ++ + K NR+ + Sbjct: 5 KSDKSVSLSDRELQIVDLVAAGLTNQEIAQDLEISKRTVDNHISNILQKTHTDNRVALVR 64 Query: 227 KAIRFGYIC 235 A+++G +C Sbjct: 65 WALQWGKVC 73 >gi|78045671|ref|YP_361846.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034101|emb|CAJ21746.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 210 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 38/71 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F+ + + ERE + L+L GY+++EIA L L+ TV Y+ + KL +R + Sbjct: 140 FRDQQAPRETFNEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTR 199 Query: 224 AIAKAIRFGYI 234 A+ KAI I Sbjct: 200 AVLKAITLRVI 210 >gi|306832945|ref|ZP_07466077.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|325977686|ref|YP_004287402.1| nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304424844|gb|EFM27978.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|325177614|emb|CBZ47658.1| Nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 198 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + L+++E LQL G T++EIA+ L LS TV Y+ S KL A NR Sbjct: 126 ELMETMMTQDNPLSQQEKRILQLISLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNR 185 Query: 222 IQAIAKAIRFGYI 234 ++A A G++ Sbjct: 186 VEAARIAEEHGWV 198 >gi|291301939|ref|YP_003513217.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571159|gb|ADD44124.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L G ++ EIA++L +S TV ++G KL +R+QA+ A G Sbjct: 160 LTEREREVLILVAKGMSNTEIAKELTVSETTVKTHVGHVLTKLGVRDRVQAVVLAYETGL 219 Query: 234 I 234 + Sbjct: 220 V 220 >gi|297562061|ref|YP_003681035.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846509|gb|ADH68529.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 218 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 37/68 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R A LT RET L+L G ++IA++LG+S TV ++ + KL NR++ Sbjct: 148 RSREPEAPELTPRETEVLRLVAKGLAYKQIAQRLGISHRTVQNHVQNTLTKLHLHNRVEL 207 Query: 225 IAKAIRFG 232 + AI G Sbjct: 208 VRYAIDRG 215 >gi|148240620|ref|YP_001226007.1| LuxR family transcriptional regulator [Synechococcus sp. WH 7803] gi|147849159|emb|CAK24710.1| Transcriptional regulator, luxR family [Synechococcus sp. WH 7803] Length = 92 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE ++L +G T++EIAE+L +S TV+ ++ + K + NR+ + A+ G Sbjct: 14 LSARELEIIELVSEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMDHGK 73 Query: 234 IC 235 IC Sbjct: 74 IC 75 >gi|126659693|ref|ZP_01730822.1| Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] gi|126619038|gb|EAZ89778.1| Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] Length = 90 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE + L G T+ EIA+KL +S TV+ ++ + K NR++ + A+++G Sbjct: 11 SLSGREMQIVDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTENRVELVRWALQWG 70 Query: 233 YIC 235 +C Sbjct: 71 KVC 73 >gi|125718640|ref|YP_001035773.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|323350296|ref|ZP_08085961.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|125498557|gb|ABN45223.1| Two-component response transcriptional regulator (CheY-like receiver and HTH DNA-binding domains), putative [Streptococcus sanguinis SK36] gi|322123481|gb|EFX95152.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|324991776|gb|EGC23708.1| DNA-binding response regulator [Streptococcus sanguinis SK353] gi|325697714|gb|EGD39599.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|327467206|gb|EGF12710.1| DNA-binding response regulator [Streptococcus sanguinis SK330] Length = 210 Score = 42.4 bits (98), Expect = 0.055, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 3/111 (2%) Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 +PV L +GY++ TS E ++ A + + + A ++ +E + +LT R Sbjct: 90 YPV-LDAGAHGYMLKTSSAEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 E L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A Sbjct: 149 ERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYA 199 >gi|328887358|emb|CCA60597.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 226 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 5/107 (4%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDG 188 I + ++ A + +I A G ++I +F + + + R +T+RE L L G G Sbjct: 119 ILAAVRVVAAGDALI-APGVTRRLIKEFTDRPRTAPAVPRRRAEGITDREREVLTLVGRG 177 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++ E+A +L +SV T Y+ KL+A +R+Q + A G + Sbjct: 178 LSNTEVAAELHISVATAKTYVTRLLAKLNARDRVQLVIIAYEAGLVS 224 >gi|262202633|ref|YP_003273841.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262085980|gb|ACY21948.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 216 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 32/53 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A +LTERE G ++ EIAE+L +S+ TV A++ KLDA NR+Q Sbjct: 153 AESLTERERDVAVELARGASNAEIAERLYMSLATVKAHISHIFTKLDATNRVQ 205 >gi|75812313|ref|YP_319932.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705069|gb|ABA24743.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 220 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 4/79 (5%) Query: 160 FLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 L++F + + + +LT+RE S L L G+++++I EKL + +TV + + K Sbjct: 134 LLKIFPTQKAKGKIFDDHLTQREISVLALIAAGFSNKQIGEKLFIGENTVKNHARNIYSK 193 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +RI AI K GYI Sbjct: 194 LGVDSRINAILKGSELGYI 212 >gi|21224033|ref|NP_629812.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|7801256|emb|CAB91120.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 237 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 9/115 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKR--SSAARNLTERET 179 G+++ + F L + V + A G ++I +F+ R AA +LT RET Sbjct: 111 GGFLLKDATFPELLHAVRVVAGGNALLSPEITKRLIAEFVHARGSRLPVPAAGDLTARET 170 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ EIA +L ++ HTV ++ KL+ +R QA+ A G + Sbjct: 171 EVLTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELRDRAQAVIVAYELGLV 225 >gi|152974963|ref|YP_001374480.1| two component LuxR family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023715|gb|ABS21485.1| two component transcriptional regulator, LuxR family [Bacillus cytotoxicus NVH 391-98] Length = 210 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 40/70 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 140 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199 Query: 225 IAKAIRFGYI 234 + A R I Sbjct: 200 VIYAFRHQLI 209 >gi|291455100|ref|ZP_06594490.1| response regulator [Streptomyces albus J1074] gi|291358049|gb|EFE84951.1| response regulator [Streptomyces albus J1074] Length = 222 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE ++L +G + EIA KL S TV + T +L NR A+A A+R G Sbjct: 161 GLTPREVDVVRLIAEGLDTGEIAGKLSYSERTVKNVIHGVTTRLHLRNRAHAVAFALREG 220 Query: 233 YI 234 YI Sbjct: 221 YI 222 >gi|289706045|ref|ZP_06502418.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557247|gb|EFD50565.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 227 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L+L G ++ EIA L +S TV A L KL+ +R+Q I +A + G Sbjct: 161 DLTERELGVLRLLARGQSNPEIAANLFVSESTVKANLTRIMAKLEVRDRVQLIIRAAQLG 220 Query: 233 YI 234 + Sbjct: 221 LV 222 >gi|288919771|ref|ZP_06414097.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288348871|gb|EFC83122.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 135 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 30/55 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A L +RE LQL DG T+ +I +LGLS TV Y+ S KL +R QA Sbjct: 71 AMATLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQA 125 >gi|326317523|ref|YP_004235195.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374359|gb|ADX46628.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 229 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT R+ L L DG ++ IA L LS HTV +L + KL+A NR++ IAK Sbjct: 166 GLTPRQGEILALVLDGMPNKPIASALHLSEHTVKEHLTAILQKLEARNRVELIAK 220 >gi|302559483|ref|ZP_07311825.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302477101|gb|EFL40194.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 220 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 4/90 (4%) Query: 149 AHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 A G ++I +F L + + R LTERET L L G ++ EIA +L ++ T Sbjct: 126 APGITRRLIAEFSRLDARPRTPLRQRVGELTERETEVLALIAQGLSNAEIAVRLVVAEQT 185 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++G VKL +R QA A G + Sbjct: 186 VKTHVGRILVKLGLRDRTQAAVFAYESGLV 215 >gi|152999376|ref|YP_001365057.1| response regulator receiver protein [Shewanella baltica OS185] gi|151363994|gb|ABS06994.1| response regulator receiver protein [Shewanella baltica OS185] Length = 221 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 45/188 (23%), Positives = 74/188 (39%), Gaps = 19/188 (10%) Query: 42 LDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS 101 LD RR + LD+ IP + + HF L + S+ +E+ + Sbjct: 41 LDKSRRSFYLITQKGAALDNKGIPLL-----ASRLVSHFPVALYQVERDSLDQESAM--- 92 Query: 102 GQLSVRLEGGLLPFAGIAFP-VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF 160 LL GI F RL G +E L ++ + Q + Sbjct: 93 ----------LLGIRGILFADQRLDLMLTGLRKMVAEELWYDRTLLSKVFRRVVQKLDGN 142 Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 E+ + + LT RE + +Q G ++EIA +L +S HTV A++ S K + N Sbjct: 143 NEMLSDTVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRN 202 Query: 221 RIQAIAKA 228 R++ + A Sbjct: 203 RVELLRWA 210 >gi|120611166|ref|YP_970844.1| two component LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120589630|gb|ABM33070.1| two component transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] Length = 229 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT R+ L L DG ++ IA L LS HTV +L + KL+A NR++ IAK Sbjct: 166 GLTPRQGEILALVLDGLPNKPIASSLHLSEHTVKEHLTAILQKLEARNRVELIAK 220 >gi|33860714|ref|NP_892275.1| LuxR family regulatory protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633656|emb|CAE18613.1| Bacterial regulatory protein, LuxR family [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 92 Score = 42.4 bits (98), Expect = 0.056, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L DG T++EIA +L +S TV+ ++ + K + NR+ + A+ G Sbjct: 16 LSSREMEIINLVADGLTNQEIAVRLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHGK 75 Query: 234 IC 235 IC Sbjct: 76 IC 77 >gi|331000968|ref|ZP_08324605.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] gi|329569927|gb|EGG51684.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] Length = 208 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R LT RE L L +G T++EIA++L LSV T+ + A+ KL A + + I +A+ Sbjct: 143 RQLTNREKEVLSLVAEGLTNKEIADRLELSVPTIKMHRSRASEKL-ATDSVAEITRAL 199 >gi|302531645|ref|ZP_07283987.1| two component transcriptional regulator [Streptomyces sp. AA4] gi|302440540|gb|EFL12356.1| two component transcriptional regulator [Streptomyces sp. AA4] Length = 202 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L+G G EI +L L+ TV YL S KL NR+ A A G+ Sbjct: 142 LTERELEVLRLSGAGLRPAEIGARLSLAEGTVRNYLSSTLTKLQVDNRVAAYRVAEEAGW 201 Query: 234 I 234 + Sbjct: 202 L 202 >gi|239983271|ref|ZP_04705795.1| response regulator [Streptomyces albus J1074] Length = 202 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE ++L +G + EIA KL S TV + T +L NR A+A A+R G Sbjct: 141 GLTPREVDVVRLIAEGLDTGEIAGKLSYSERTVKNVIHGVTTRLHLRNRAHAVAFALREG 200 Query: 233 YI 234 YI Sbjct: 201 YI 202 >gi|226305875|ref|YP_002765835.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184992|dbj|BAH33096.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 220 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIAE+L ++ TV ++G KLD +R QA+ A G Sbjct: 157 LTPREREVLELIARGLSNVEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGL 216 Query: 234 IC 235 + Sbjct: 217 VT 218 >gi|157693950|ref|YP_001488412.1| response regulator DegU [Bacillus pumilus SAFR-032] gi|157682708|gb|ABV63852.1| response regulator DegU [Bacillus pumilus SAFR-032] Length = 229 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R QA+ AI+ G+ Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGW 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|45259328|emb|CAE51186.1| RemP protein [Streptomyces resistomycificus] Length = 221 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 29/57 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L L D + IA++LG+S TV YL KL NR+Q A R Sbjct: 153 LTERERQILSLVADEQATHRIAKRLGISPKTVRNYLSRIYAKLGTQNRVQTALYAKR 209 >gi|315502217|ref|YP_004081104.1| ATP-dependent transcriptional regulator, malt-like, luxr family [Micromonospora sp. L5] gi|315408836|gb|ADU06953.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Micromonospora sp. L5] Length = 890 Score = 42.4 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 59/147 (40%), Gaps = 21/147 (14%) Query: 96 TVIESSGQLSVRLEGGLLPFAG------------IAFPVRLGFHKNGYVIFTSEFLMLA- 142 TV + +LS +++G L P V GF +++ +E LA Sbjct: 725 TVAQRLAELSEQVDGVLPPLVARFGRAAVDGSPDALLAVADGFADRELIVYAAEATALAL 784 Query: 143 ---NEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEI 194 V A G + + D L + S+ A L+ERE +LA DG TS I Sbjct: 785 HRTRHVRAGATGPIRERLADLLRRCDEISTPALRLLRPTLSEREWEIARLAADGVTSRAI 844 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNR 221 AE+L LS TV +L KL R Sbjct: 845 AERLYLSTRTVENHLQRVYSKLGVAGR 871 >gi|289626196|ref|ZP_06459150.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648347|ref|ZP_06479690.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. 2250] gi|330868455|gb|EGH03164.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 909 Score = 42.4 bits (98), Expect = 0.057, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 848 LSVRELGVLHLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKVLGL 907 Query: 234 I 234 + Sbjct: 908 L 908 >gi|297561045|ref|YP_003680019.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845493|gb|ADH67513.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 247 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%) Query: 155 QVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++I++F L + AR L T+RE L L G ++ E+AE L LS+ TV ++G Sbjct: 149 RLISEFARLPEPGRPPARALDGVTDREVEVLGLIARGLSNTELAEHLHLSLATVKTHIGR 208 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL A +R Q + A G + Sbjct: 209 LRAKLGARDRAQLVITAYETGLV 231 >gi|15806010|ref|NP_294711.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6458715|gb|AAF10563.1|AE001951_3 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 239 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L++A G T++EIA L +S TV +L + KL +R +A+ I+ G Sbjct: 173 DLSPRELEVLRVAASGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRG 232 Query: 233 YI 234 +I Sbjct: 233 WI 234 >gi|54027465|ref|YP_121707.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54018973|dbj|BAD60343.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 222 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L++ G ++++IA +LGLS TV ++ + KL NR++ AI G Sbjct: 162 LTERETEVLRMVAKGLSAKQIAARLGLSHRTVENHVQATLRKLQLANRVELTRYAIEQG 220 >gi|21219585|ref|NP_625364.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|8744963|emb|CAB95289.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] Length = 221 Score = 42.4 bits (98), Expect = 0.057, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 2/88 (2%) Query: 149 AHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + G ++I +F K+ ++ LTERE + L G G ++EEIA +L +S T Sbjct: 128 SPGVTRRLIAEFAVRSKEPAAPGEMARLTEREREVMALVGIGLSNEEIARRLVVSPLTAK 187 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ VKL A +R Q + A G + Sbjct: 188 THVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|325964374|ref|YP_004242280.1| LuxR family transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323470461|gb|ADX74146.1| two component transcriptional regulator, LuxR family [Arthrobacter phenanthrenivorans Sphe3] Length = 217 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I D+LE ++ + LT RE +L +G +++EIA+ L +S+ TV+ + Sbjct: 131 GAVTALIRDYLERDRRGDRMPNSILTPREEQITKLIAEGNSTKEIADALKISIKTVDRHR 190 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R+ AIR G I Sbjct: 191 ANVLQKLGLRDRLDLTRFAIRTGLI 215 >gi|312278646|gb|ADQ63303.1| Two-component system transcriptional regulator (CheY domain and HTH-like DNA-binding domain), putative [Streptococcus thermophilus ND03] Length = 200 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L++RE L + G T++EIAE L LS T+ Y+ + KLDA NR A+ Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTIRNYMTAILTKLDAGNRTDAV 190 >gi|269795459|ref|YP_003314914.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269097644|gb|ACZ22080.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 222 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 44/88 (50%), Gaps = 9/88 (10%) Query: 150 HGACYQVIT-----DFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGL 200 HG Q +T +F++ R AA LTERE L L G +++EIA +L + Sbjct: 124 HGTIDQTLTRRILREFVDRRSLRPVAAHRADGLLTEREREILLLLAQGMSNDEIARELVV 183 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKA 228 V TV ++L KL +R+QA+ A Sbjct: 184 EVSTVKSHLARMLPKLGVRSRLQAVVWA 211 >gi|269837643|ref|YP_003319871.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786906|gb|ACZ39049.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 234 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Query: 141 LANEVIIEAHGACYQVITDFLELFK---KRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L NE ++ +V+ F EL + S LT RE L G +++EIA Sbjct: 126 LINENVLSRPFVASRVLDQFRELAQIDEVSSGVFSPLTPREVEILDCVARGNSNKEIARL 185 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S TV ++ S KL +R QA+ A+R G+I Sbjct: 186 LNISDQTVKNHITSILRKLAVNDRTQAVIYALRHGWI 222 >gi|108763932|ref|YP_633456.1| LuxR family transcriptional regulator [Myxococcus xanthus DK 1622] gi|108467812|gb|ABF92997.1| transcriptional regulator, LuxR family [Myxococcus xanthus DK 1622] Length = 902 Score = 42.4 bits (98), Expect = 0.058, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ LTERE L+L G +++EI+E+ +++ T +L + KLD R AI K Sbjct: 834 SAPLEPLTERELQMLKLLAQGLSNQEISERSNVALSTTKWHLRNVFAKLDVTTRTAAIVK 893 Query: 228 A 228 A Sbjct: 894 A 894 >gi|317126112|ref|YP_004100224.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590200|gb|ADU49497.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 217 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L DG + EIA++L +S TV + S KL A +R +A+ KA+ G Sbjct: 150 LTDRERQVLSLLVDGLHNREIADRLHISSRTVERHCDSLYGKLGAGSRTEAVVKALSHGI 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|288924538|ref|ZP_06418483.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288344115|gb|EFC78699.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 214 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 30/55 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A L +RE LQL DG T+ +I +LGLS TV Y+ S KL +R QA Sbjct: 151 AMATLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQA 205 >gi|257057888|ref|YP_003135720.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587760|gb|ACU98893.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 216 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L+L G T+++IA++L +S TV ++ S KL NR++ AI G Sbjct: 153 LTERETEVLRLVAKGLTAKQIADRLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHG 211 >gi|226364726|ref|YP_002782508.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226243215|dbj|BAH53563.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 230 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G G+++ EI +LG+S TV +++G +KLD +R AI A G Sbjct: 157 ELTARELDVLALIGRGHSNSEIGRELGISGVTVKSHVGHIFLKLDLRDRAAAIVYAFDHG 216 Query: 233 YI 234 + Sbjct: 217 IV 218 >gi|24379934|ref|NP_721889.1| putative response regulator [Streptococcus mutans UA159] gi|290580086|ref|YP_003484478.1| putative response regulator [Streptococcus mutans NN2025] gi|24377915|gb|AAN59195.1|AE014986_6 putative response regulator [Streptococcus mutans UA159] gi|254996985|dbj|BAH87586.1| putative response regulator [Streptococcus mutans NN2025] Length = 198 Score = 42.4 bits (98), Expect = 0.058, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 41/72 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL ++ + + L+ERE LQL G +++ IAE+L LS T+ Y+ + KL+A NR Sbjct: 126 ELVEEVTFDSNPLSEREQEVLQLVAKGASNQTIAEQLFLSNGTIRNYMTAIFNKLNANNR 185 Query: 222 IQAIAKAIRFGY 233 A+ A G+ Sbjct: 186 TDAVRIARENGW 197 >gi|317404517|gb|EFV84926.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 83 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 27/68 (39%), Positives = 37/68 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ A L+ RE++ L + G TS E A L +S TVN +L +A KL R A+A Sbjct: 11 RAPAPVRLSPRESASLHWSAIGKTSWETARILDISESTVNFHLRNACRKLQVRGRRAAVA 70 Query: 227 KAIRFGYI 234 AIR G + Sbjct: 71 TAIRRGLL 78 >gi|213967183|ref|ZP_03395332.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301381082|ref|ZP_07229500.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302060741|ref|ZP_07252282.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302133226|ref|ZP_07259216.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928025|gb|EEB61571.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 910 Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 849 LSVRELGVLRLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILGL 908 Query: 234 I 234 + Sbjct: 909 L 909 >gi|171058317|ref|YP_001790666.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775762|gb|ACB33901.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 236 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L++ G G+ + EI L +SV+TVN Y+ KL +R +A +A R G Sbjct: 174 RLTGREEDVLRMMGKGHKAAEIGRLLAISVNTVNGYVREVYRKLGISSRAEAAIEATRRG 233 Query: 233 YI 234 + Sbjct: 234 LL 235 >gi|16080602|ref|NP_391429.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|154687664|ref|YP_001422825.1| DegU [Bacillus amyloliquefaciens FZB42] gi|221311500|ref|ZP_03593347.1| DegU [Bacillus subtilis subsp. subtilis str. 168] gi|221315827|ref|ZP_03597632.1| DegU [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320742|ref|ZP_03602036.1| DegU [Bacillus subtilis subsp. subtilis str. JH642] gi|221325027|ref|ZP_03606321.1| DegU [Bacillus subtilis subsp. subtilis str. SMY] gi|296330243|ref|ZP_06872724.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676152|ref|YP_003867824.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|308175281|ref|YP_003921986.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|321313096|ref|YP_004205383.1| two-component response regulator [Bacillus subtilis BSn5] gi|118438|sp|P13800|DEGU_BACSU RecName: Full=Transcriptional regulatory protein degU; AltName: Full=Protease production enhancer protein gi|143089|gb|AAA22545.1| iep protein [Bacillus subtilis] gi|143499|gb|AAA22733.1| degU protein (gtg start codon) [Bacillus subtilis] gi|143502|gb|AAA22735.1| protein kinase (put.); putative [Bacillus subtilis] gi|1762330|gb|AAC44938.1| transcriptional regulator of degradation enzymes [Bacillus subtilis subsp. subtilis str. 168] gi|2636075|emb|CAB15566.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|126363001|emb|CAM35818.1| two-component response regulator DegU [Bacillus amyloliquefaciens FZB42] gi|154353515|gb|ABS75594.1| DegU [Bacillus amyloliquefaciens FZB42] gi|206967377|gb|ACI22669.1| two-component response regulator DegU [Bacillus subtilis] gi|219937642|emb|CAJ97429.1| transcriptional regulatory protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296152511|gb|EFG93379.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414396|gb|ADM39515.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|307608145|emb|CBI44516.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|320019370|gb|ADV94356.1| two-component response regulator [Bacillus subtilis BSn5] gi|328913615|gb|AEB65211.1| Transcriptional regulatory protein degU [Bacillus amyloliquefaciens LL3] Length = 229 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R QA+ AI+ G+ Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGW 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|331018080|gb|EGH98136.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 910 Score = 42.4 bits (98), Expect = 0.059, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 849 LSVRELGVLRLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILGL 908 Query: 234 I 234 + Sbjct: 909 L 909 >gi|330975620|gb|EGH75686.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 704 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 643 LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKNHASHINNKLGVERRTQAVARAKTLGL 702 Query: 234 I 234 + Sbjct: 703 L 703 >gi|325926758|ref|ZP_08188066.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|325542839|gb|EGD14294.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 210 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 38/71 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F+ + + ERE + L+L GY+++EIA L L+ TV Y+ + KL +R + Sbjct: 140 FRDQQAPRETFNEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTR 199 Query: 224 AIAKAIRFGYI 234 A+ KAI I Sbjct: 200 AVLKAITLRVI 210 >gi|229493356|ref|ZP_04387145.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|229319672|gb|EEN85504.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 220 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIAE+L ++ TV ++G KLD +R QA+ A G Sbjct: 157 LTPREREVLELIARGLSNVEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGL 216 Query: 234 IC 235 + Sbjct: 217 VT 218 >gi|297202823|ref|ZP_06920220.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197717613|gb|EDY61647.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 217 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA ++ +L+ L + R +TERE L+L +G+T++EI E L +S TV + Sbjct: 131 GAERALVRSYLDRLHRGDDLPRRAVTEREEEILKLVAEGHTTKEIGELLFISAKTVERHR 190 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G I Sbjct: 191 ANLLHKLGMRDRLELTRYAIRAGLI 215 >gi|239916849|ref|YP_002956407.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281414690|ref|ZP_06246432.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239838056|gb|ACS29853.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 227 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L+L G ++ EIA L +S TV A L KL+ +R+Q I +A + G Sbjct: 161 DLTERELGVLRLLARGQSNPEIAANLFVSESTVKANLTRIMAKLEVRDRVQLIIRAAQLG 220 Query: 233 YI 234 + Sbjct: 221 LV 222 >gi|149186879|ref|ZP_01865189.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148829546|gb|EDL47987.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 226 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 42/99 (42%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 ++F ++ N+ + E EL ++ R L RE L G T+ EIA Sbjct: 126 TDFSVIENDNLFEFTATLQMAHRRLDELARQDEPIRRRLPRREVEILHWIAKGKTNAEIA 185 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG++ TV ++ KLD +R K R+G I Sbjct: 186 AILGVAAPTVATHIARMFQKLDVNDRAALAVKGFRYGII 224 >gi|313201574|ref|YP_004040232.1| LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|26005747|dbj|BAC41336.1| transcription regulator like protein EpsA [Methylobacillus sp. 12S] gi|312440890|gb|ADQ84996.1| transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 265 Score = 42.4 bits (98), Expect = 0.059, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 37/66 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L ++ + A L+ RE ++ +G T++EI L +S TV +L KLD +NR Sbjct: 192 DLHEEENEALEQLSSREIEIMEWVRNGKTNQEIGMILDISSFTVKNHLQRIFKKLDVLNR 251 Query: 222 IQAIAK 227 QA++K Sbjct: 252 AQAVSK 257 >gi|300865100|ref|ZP_07109925.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300336871|emb|CBN55075.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 210 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE+ L+L +GY++ EIA L LS +T+ ++ KL +R+QA A+R G Sbjct: 149 QLSQRESEVLKLMVEGYSNPEIAAALYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRAG 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|253575534|ref|ZP_04852871.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845181|gb|EES73192.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 200 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA G T+ EIA L LS TV Y+ KL+ +RI+A+ A G+ Sbjct: 140 LTAREQEILRLAAKGCTASEIAASLHLSYGTVRNYISEILNKLEVKSRIEAVRLAEENGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|297197789|ref|ZP_06915186.1| two component system response regulator [Streptomyces sviceus ATCC 29083] gi|197716622|gb|EDY60656.1| two component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G ++I +F K+ + A LTERE + L G G ++EEIA +L +S T + Sbjct: 130 GVTRRLIAEFAARSKEPEAEGALAGLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + VKL A +R Q + A G + Sbjct: 190 VSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|148553102|ref|YP_001260684.1| LuxR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148498292|gb|ABQ66546.1| transcriptional regulator, LuxR family [Sphingomonas wittichii RW1] Length = 254 Score = 42.4 bits (98), Expect = 0.060, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 163 LFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L K R+ A LT R+ CL+L G T E+ + LGLS T++ Y+ +A + Sbjct: 175 LVKGRAVKAHGAPLTPRQIDCLRLIAAGKTEWEMGKILGLSPSTIHEYVEAARRRYGVKT 234 Query: 221 RIQAIAKAIRFGYI 234 R Q + A R GY+ Sbjct: 235 RSQLVLAAARDGYV 248 >gi|28868366|ref|NP_790985.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28851603|gb|AAO54680.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 910 Score = 42.4 bits (98), Expect = 0.060, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 849 LSVRELGVLRLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKILGL 908 Query: 234 I 234 + Sbjct: 909 L 909 >gi|284046302|ref|YP_003396642.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950523|gb|ADB53267.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 244 Score = 42.0 bits (97), Expect = 0.060, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE + L G G T+ E+AE+L +S T ++ A KLDA +R Q + A G Sbjct: 178 LTDREREVVALVGAGLTNHELAERLVISPATAKTHVSRAMGKLDARDRAQLVVLAYESGL 237 Query: 234 I 234 + Sbjct: 238 V 238 >gi|116071519|ref|ZP_01468787.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116065142|gb|EAU70900.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 92 Score = 42.0 bits (97), Expect = 0.060, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE +QL +G T++EIA++L +S TV+ ++ + K + NR+ + ++ G Sbjct: 14 LSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWSMDNGK 73 Query: 234 IC 235 IC Sbjct: 74 IC 75 >gi|26991331|ref|NP_746756.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|24986392|gb|AAN70220.1|AE016661_6 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] Length = 279 Score = 42.0 bits (97), Expect = 0.060, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ERE L+ + G T+ ++A L LS TVN ++ S K +A N+ AIA A G Sbjct: 218 KMSERELEVLKWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRG 277 Query: 233 YI 234 +I Sbjct: 278 WI 279 >gi|302865653|ref|YP_003834290.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|302568512|gb|ADL44714.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] Length = 890 Score = 42.0 bits (97), Expect = 0.061, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 59/147 (40%), Gaps = 21/147 (14%) Query: 96 TVIESSGQLSVRLEGGLLPFAG------------IAFPVRLGFHKNGYVIFTSEFLMLA- 142 TV + +LS +++G L P V GF +++ +E LA Sbjct: 725 TVAQRLAELSEQVDGVLPPLVARFGRAAVDGSPDALLAVADGFADRELIVYAAEATALAL 784 Query: 143 ---NEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEI 194 V A G + + D L + S+ A L+ERE +LA DG TS I Sbjct: 785 HRTRHVRAGATGPIRERLADLLRRCDEISTPALRLLRPTLSEREWEIARLAADGVTSRAI 844 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNR 221 AE+L LS TV +L KL R Sbjct: 845 AERLFLSTRTVENHLQRVYSKLGVAGR 871 >gi|296332888|ref|ZP_06875348.1| YdfI [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673234|ref|YP_003864906.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150168|gb|EFG91057.1| YdfI [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411478|gb|ADM36597.1| two-component response regulator (paired with YdfH) [Bacillus subtilis subsp. spizizenii str. W23] Length = 213 Score = 42.0 bits (97), Expect = 0.061, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LE KK+SS LTE+E L+ G+ S+ IA LG+S TV + L S KL A + Sbjct: 137 LEQMKKQSSD-TQLTEKEVIVLKAIAKGFKSKAIAFDLGVSERTVKSRLTSIYNKLGANS 195 Query: 221 RIQAIAKAIRFGYIC 235 R +A+ A++ G + Sbjct: 196 RTEAVTIAMQRGILT 210 >gi|288555019|ref|YP_003426954.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288546179|gb|ADC50062.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 199 Score = 42.0 bits (97), Expect = 0.061, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE ++L +G ++ EIA +L L+ TV Y+ KLD NRI+AI++ G+ Sbjct: 138 LTNREKQVMELIAEGKSTNEIASELYLTNGTVRNYISVILDKLDVGNRIEAISRFKEKGW 197 >gi|126657363|ref|ZP_01728522.1| NarL subfamily protein [Cyanothece sp. CCY0110] gi|126621350|gb|EAZ92062.1| NarL subfamily protein [Cyanothece sp. CCY0110] Length = 210 Score = 42.0 bits (97), Expect = 0.061, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L +G ++ EIAE L LS +T+ ++ KL +R+QA A+R G Sbjct: 150 LSERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGL 209 Query: 234 I 234 + Sbjct: 210 V 210 >gi|52082083|ref|YP_080874.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52787473|ref|YP_093302.1| DegU [Bacillus licheniformis ATCC 14580] gi|319647951|ref|ZP_08002169.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2] gi|52005294|gb|AAU25236.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52349975|gb|AAU42609.1| DegU [Bacillus licheniformis ATCC 14580] gi|56310547|emb|CAE82205.1| two-component response regulator [Bacillus licheniformis] gi|106880136|emb|CAJ70739.1| two component response regulator [Bacillus licheniformis] gi|106880142|emb|CAJ70744.1| two component response regulator [Bacillus licheniformis] gi|317390292|gb|EFV71101.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2] Length = 229 Score = 42.0 bits (97), Expect = 0.061, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R QA+ AI+ G+ Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGW 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|303248220|ref|ZP_07334483.1| transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] gi|302490358|gb|EFL50269.1| transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] Length = 258 Score = 42.0 bits (97), Expect = 0.061, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L +G +S +IA LG+ TV ++ + KL AVNR Q +A A+R G Sbjct: 195 LSRREREVLDWLKEGKSSWDIAMVLGIRERTVRFHVANLMRKLGAVNRAQTVALALRRGL 254 Query: 234 I 234 I Sbjct: 255 I 255 >gi|298251645|ref|ZP_06975448.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546237|gb|EFH80105.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1081 Score = 42.0 bits (97), Expect = 0.061, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%) Query: 159 DFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 D L L ++R+ A L+ RE L L G +++EIA +L +++ TV ++ + L Sbjct: 1005 DHLALLRERTRAGEQILSPREREVLLLLSTGASNQEIANQLIITLGTVKRHVNTILATLQ 1064 Query: 218 AVNRIQAIAKA 228 NR QA+A+A Sbjct: 1065 VSNRTQAVARA 1075 >gi|269793167|ref|YP_003318071.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100802|gb|ACZ19789.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 211 Score = 42.0 bits (97), Expect = 0.061, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S L++RE L LA G S+EIA +L +S TV A+L S KL A N+ +A+ Sbjct: 135 SGPTEELSQREREVLLLASRGLASKEIASRLVISDRTVQAHLASIYGKLGARNKTEAMLL 194 Query: 228 AIRFGYI 234 ++ G + Sbjct: 195 GLKHGIL 201 >gi|254391946|ref|ZP_05007138.1| response regulator [Streptomyces clavuligerus ATCC 27064] gi|294817739|ref|ZP_06776381.1| response regulator [Streptomyces clavuligerus ATCC 27064] gi|197705625|gb|EDY51437.1| response regulator [Streptomyces clavuligerus ATCC 27064] gi|294322554|gb|EFG04689.1| response regulator [Streptomyces clavuligerus ATCC 27064] Length = 216 Score = 42.0 bits (97), Expect = 0.061, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + RE L+L DG + +I++KL S T+ L +L NR A+A A+R G Sbjct: 155 GMAPREVDVLRLIADGLDTRQISQKLAYSERTIKNILHGVMTRLQLSNRAHAVAFALREG 214 Query: 233 YI 234 YI Sbjct: 215 YI 216 >gi|158315847|ref|YP_001508355.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111252|gb|ABW13449.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 216 Score = 42.0 bits (97), Expect = 0.061, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 30/55 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A L +RE LQL DG T+ +I +LGLS TV Y+ S KL +R QA Sbjct: 152 AMATLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQA 206 >gi|108805405|ref|YP_645342.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766648|gb|ABG05530.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 207 Score = 42.0 bits (97), Expect = 0.061, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 37/72 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K+ + LT RE L+L G T+ E+A L +S TV ++ S KL A NR Sbjct: 134 VLKEMRGESEPLTPRELEVLRLVARGLTNREVARALFISERTVKFHVSSLLAKLRAENRT 193 Query: 223 QAIAKAIRFGYI 234 QA+A A G + Sbjct: 194 QAVAIARERGLL 205 >gi|293606534|ref|ZP_06688892.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292815157|gb|EFF74280.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 228 Score = 42.0 bits (97), Expect = 0.062, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT+R+ LQL G T EI + +G+SV TV ++ + KL+A N+ +A A++ Sbjct: 152 RELTQRQEEILQLLVQGKTMREIGQHVGISVATVKSHARTLYWKLNARNQAEAAYIAVQM 211 Query: 232 GYI 234 G + Sbjct: 212 GLV 214 >gi|228990549|ref|ZP_04150514.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM 12442] gi|228996650|ref|ZP_04156289.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17] gi|229004298|ref|ZP_04162099.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4] gi|228757159|gb|EEM06403.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4] gi|228763282|gb|EEM12190.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17] gi|228769075|gb|EEM17673.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM 12442] Length = 210 Score = 42.0 bits (97), Expect = 0.062, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 140 KKEQPLHEDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199 Query: 225 IAKAIR 230 + A R Sbjct: 200 VIYAFR 205 >gi|88855004|ref|ZP_01129669.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88815532|gb|EAR25389.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 221 Score = 42.0 bits (97), Expect = 0.062, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 11/127 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN- 173 +A +R G +G+++ +E + L V + A G V LE F + S A + Sbjct: 92 VARAIRAG--ASGFLVKDTEPVELIRAVRVVASGDALLSPGVTKRLLERFARGSQVAVDA 149 Query: 174 -----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +T+RE L L G G T+ EI KL LS T ++ KL A +R+Q + A Sbjct: 150 SVLSVITDREREVLALVGQGLTNAEIGVKLFLSPLTAKTHVSRIMAKLAARDRVQLVVIA 209 Query: 229 IRFGYIC 235 G + Sbjct: 210 YETGLVS 216 >gi|114561545|ref|YP_749058.1| two component transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] gi|114332838|gb|ABI70220.1| two component transcriptional regulator, LuxR family [Shewanella frigidimarina NCIMB 400] Length = 202 Score = 42.0 bits (97), Expect = 0.062, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L ++E L+LA +G ++ +IA +L ++ TV YL A KL+A NRI A A + G+ Sbjct: 142 LNDKERRALRLASEGLSTSDIASQLFIAEGTVRNYLSEAISKLNASNRIDAARIAKQKGW 201 Query: 234 I 234 + Sbjct: 202 L 202 >gi|293394993|ref|ZP_06639281.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera DSM 4582] gi|291422521|gb|EFE95762.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera DSM 4582] Length = 222 Score = 42.0 bits (97), Expect = 0.062, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY++ SE L + + A G + D+L ++ +LTERE LQ Sbjct: 115 DGYLLKDSEPEQLLTSIRLAAEGENVISDAVADYLSSRSEQHDPFADLTERELDVLQEVA 174 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G +++++A +L +S TV ++ + KLD +R+ A Sbjct: 175 RGMSNKQVAVQLHISEETVKVHIRNMLRKLDVRSRVAA 212 >gi|154243760|ref|YP_001409333.1| autoinducer-binding domain-containing protein [Xanthobacter autotrophicus Py2] gi|154162882|gb|ABS70097.1| Autoinducer-binding domain protein [Xanthobacter autotrophicus Py2] Length = 233 Score = 42.0 bits (97), Expect = 0.062, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 4/123 (3%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAA 171 +GI+ PVR F + S L E I+ A V ++ ++ +S Sbjct: 111 SGISIPVRTAFGHLSMLTLASHKPSLNLETDIDQIAAVTAVAQLHAKMEQQDAEPTASVE 170 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L ++ CL+ + +G T ++IA G+S TVN +L +A LDA + QA A A + Sbjct: 171 IDLKAKQALCLKWSAEGKTMKDIASIEGMSFATVNFHLNNARKALDAGSLAQATALATKL 230 Query: 232 GYI 234 I Sbjct: 231 KLI 233 >gi|325001951|ref|ZP_08123063.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 223 Score = 42.0 bits (97), Expect = 0.063, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 36/65 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A LTERET L+L G T+ +IA KL +S TV +++ + KL NR Q + Sbjct: 156 SPAVPALTERETEVLRLVAKGMTARQIAAKLVVSHRTVESHVQNTLRKLQLHNRSQLVRY 215 Query: 228 AIRFG 232 AI G Sbjct: 216 AIEQG 220 >gi|269839567|ref|YP_003324259.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269791297|gb|ACZ43437.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 218 Score = 42.0 bits (97), Expect = 0.063, Method: Compositional matrix adjust. Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 4/77 (5%) Query: 162 ELFKKRSSAARN---LTERETSCLQLAGDGYTS-EEIAEKLGLSVHTVNAYLGSATVKLD 217 E+ K A R LTERE L+L G TS +E+AE+L LS +TV +L + KL Sbjct: 134 EMSKPAGRAEREPEVLTEREQEILELLVQGVTSNKELAERLILSENTVKYHLRNILDKLH 193 Query: 218 AVNRIQAIAKAIRFGYI 234 NR Q +A A++ G + Sbjct: 194 LQNRTQVVAYALQHGLV 210 >gi|226306620|ref|YP_002766580.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|229493687|ref|ZP_04387472.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|226185737|dbj|BAH33841.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|229319648|gb|EEN85484.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 219 Score = 42.0 bits (97), Expect = 0.063, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G ++ EIA++L LS T+ +++G KLD +R+QA+ A G Sbjct: 155 LTEREREVLGHVATGLSNIEIAQQLYLSESTIKSHVGRILTKLDLRDRVQAVVLAYETGL 214 Query: 234 IC 235 + Sbjct: 215 VT 216 >gi|319950310|ref|ZP_08024229.1| two component transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] gi|319436002|gb|EFV91203.1| two component transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] Length = 250 Score = 42.0 bits (97), Expect = 0.063, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 37/68 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+S LT RET L+L G ++ EIA++L + TV ++ S KL +R+QA+ Sbjct: 179 RASELAGLTARETEVLRLVARGLSNAEIADELVVGEATVKTHVSSCLAKLHLRDRVQAVV 238 Query: 227 KAIRFGYI 234 A G + Sbjct: 239 LAYEVGLV 246 >gi|307324110|ref|ZP_07603319.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306890559|gb|EFN21536.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 241 Score = 42.0 bits (97), Expect = 0.063, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE ++ G T+EE+A L +++ TV +LG+ KL A NR++ A A G Sbjct: 172 LTQREREVVRRVARGRTNEEVAVDLHVTLSTVKTHLGNVQRKLAARNRVEIAAWAWEHGM 231 Query: 234 I 234 + Sbjct: 232 V 232 >gi|297159387|gb|ADI09099.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 42.0 bits (97), Expect = 0.063, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 LG G+++ + L V A GA + VIT+ R +AAR Sbjct: 99 LGGGATGFLLKAGDPHELIAGVRAVAGGAAFLSPKVARHVITELGGERLTRGAAARARTD 158 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G G ++ EIA +L L TV Y+ + +L+ NR+QA A G Sbjct: 159 VLTAREREVLALVGAGLSNAEIARRLHLVEGTVKGYVSAVLDRLEVGNRVQAAIVAYEAG 218 Query: 233 YIC 235 + Sbjct: 219 LVA 221 >gi|226314987|ref|YP_002774883.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097937|dbj|BAH46379.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 235 Score = 42.0 bits (97), Expect = 0.063, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 23/129 (17%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN-------- 173 +GY++ L + V + A G Y ++I +F L ++ +A R+ Sbjct: 105 SGYLLKEMGTSDLVDAVRVVASGGAYIHPKVTGKLIEEFRRLSEQEGTAERSFSVDESQA 164 Query: 174 --------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE LQL +G ++ I E L +S TV ++ S KL+ +R QA+ Sbjct: 165 IDPKVIESLTRREREVLQLMAEGKSNRAIGEFLFISEKTVKNHVSSILQKLNVQDRTQAV 224 Query: 226 AKAIRFGYI 234 +I+ G++ Sbjct: 225 VISIKNGWV 233 >gi|148242084|ref|YP_001227241.1| HTH DNA-binding domain-containing protein [Synechococcus sp. RCC307] gi|147850394|emb|CAK27888.1| HTH DNA-binding domain protein [Synechococcus sp. RCC307] Length = 75 Score = 42.0 bits (97), Expect = 0.063, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 36/70 (51%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + + KR LT RE LQL DG T+++I ++L ++ T ++ + KLD Sbjct: 1 MAITSKRYPDPLQLTRRECEVLQLLCDGLTNQQIGQRLHIAGSTARGHVQTIMQKLDVQG 60 Query: 221 RIQAIAKAIR 230 R A A+ IR Sbjct: 61 RTAAAAEGIR 70 >gi|108798589|ref|YP_638786.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119867689|ref|YP_937641.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|108769008|gb|ABG07730.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119693778|gb|ABL90851.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] Length = 163 Score = 42.0 bits (97), Expect = 0.063, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 8/114 (7%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-----NLTERETSC 181 G+V+ S L V A G Y V L +++ R +LT RE Sbjct: 48 GFVLKDSSAEELIRAVRAVARGDSYLDPAVTARVLNTYRRAPDMPRALTSVDLTTRELDV 107 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+L G GY++ EIA +L +S TV +++G +KL+ +R AI + G + Sbjct: 108 LRLIGRGYSNAEIATELHISEVTVKSHIGHIFLKLELRDRAAAIVYSYDHGIVA 161 >gi|239621245|ref|ZP_04664276.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515706|gb|EEQ55573.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 231 Score = 42.0 bits (97), Expect = 0.064, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 7/78 (8%) Query: 152 ACYQVITDFLELFKKRS--SAARNL----TERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A + + D L + + RS AR L +RE + LA +GYT+ EIA ++ +S T Sbjct: 141 ASQKQLIDDLSVTRPRSRRDEARALLDALPDREREAVMLAAEGYTNAEIASRMFISERTA 200 Query: 206 NAYLGSATVKLDAVNRIQ 223 A+L SA KLD + R+Q Sbjct: 201 KAHLSSAANKLD-MGRVQ 217 >gi|327405789|ref|YP_004346627.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Fluviicola taffensis DSM 16823] gi|327321297|gb|AEA45789.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Fluviicola taffensis DSM 16823] Length = 186 Score = 42.0 bits (97), Expect = 0.064, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++RE L+L G+++ EIAE+L +S++T+ + KL+ R QA+ A R G Sbjct: 124 ISKRELEVLELIAQGFSNHEIAERLFVSLNTIKTHSSKLFEKLEVNRRTQAVEVAKRLGI 183 Query: 234 I 234 I Sbjct: 184 I 184 >gi|290962363|ref|YP_003493545.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22] gi|260651889|emb|CBG75019.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22] Length = 234 Score = 42.0 bits (97), Expect = 0.064, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 8/109 (7%) Query: 135 TSEFLMLANEVIIEAHGACYQVITD-FLELFKKRSSAA----RNL---TERETSCLQLAG 186 T E L+ A ++ IT +E F ++ + A R+L T RE L+L Sbjct: 110 TPEHLVAAVRLVRSGDALLAPAITRRLVERFARQDAPATPRHRDLAALTPRERDVLRLLA 169 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G + E+A+ LGLS TV ++ KL +R+QA+ A R G + Sbjct: 170 GGLNNAELADHLGLSEATVKTHVARILAKLGLRDRVQAVIVAYRTGLVS 218 >gi|320333891|ref|YP_004170602.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755180|gb|ADV66937.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 228 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 42/85 (49%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + + + + + S L+ RE L++A G T++EIA L +S TV +L Sbjct: 138 HPSVARKVLERFSTNQTPSPPEETLSPRELEVLRIAATGRTNKEIARDLDISPRTVQVHL 197 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R +A+ I+ G+I Sbjct: 198 ANIFSKLGVGSRTEAVLYGIKRGWI 222 >gi|296130719|ref|YP_003637969.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022534|gb|ADG75770.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 252 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 31/59 (52%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L GDG + EIA +L S TV + T + NR A+A A+R G I Sbjct: 194 ERERQVLRLLGDGADTREIARRLSYSERTVKVVVQDLTRRFGLRNRTHAVAFAVRHGLI 252 >gi|86159866|ref|YP_466651.1| LuxR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85776377|gb|ABC83214.1| transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 175 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ A LT+RE L DG S E+AE+LG++ TV ++L + KL NR++ Sbjct: 112 ATPADGLTQREREVALLVADGLRSREVAERLGIASQTVKSHLKTIFDKLGVRNRVE 167 >gi|15896845|ref|NP_350194.1| regulatory protein [Clostridium acetobutylicum ATCC 824] gi|15026710|gb|AAK81534.1|AE007857_7 Regulatory protein related to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325511019|gb|ADZ22655.1| Positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 862 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ERE L++ DG +++EI L +S+ TV ++ + KL NR+QA+ KA Sbjct: 800 LSERELEVLEVLCDGNSNKEIGSILNISLSTVKTHMINIYSKLHVSNRLQAVEKA 854 >gi|32170705|dbj|BAC78370.1| putative two-component system response regulator [Streptomyces sp. WA46] Length = 222 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L G G+T+ EIA + LS TV ++G K+ A +RIQA+ Sbjct: 157 LTDREREILVAIGKGWTNGEIAARFVLSESTVKTHVGRVLTKIGARDRIQAV 208 >gi|152974058|ref|YP_001373575.1| two component LuxR family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022810|gb|ABS20580.1| two component transcriptional regulator, LuxR family [Bacillus cytotoxicus NVH 391-98] Length = 220 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 36/60 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 156 QLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLIGKLELRDRTQAAIYAVRYG 215 >gi|311070055|ref|YP_003974978.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310870572|gb|ADP34047.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 229 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R QA+ AI+ G+ Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVENHVSNILQKMNVNDRTQAVVVAIKNGW 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|256784889|ref|ZP_05523320.1| two-component system response regulator [Streptomyces lividans TK24] Length = 226 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 2/82 (2%) Query: 155 QVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 ++I +F+ R AA +LT RET L L G ++ EIA +L ++ HTV ++ Sbjct: 133 RLIAEFVHARGSRLPVPAAGDLTARETEVLTLIARGLSNAEIAGRLTITDHTVKTHINRL 192 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA+ A G + Sbjct: 193 FAKLELRDRAQAVIVAYELGLV 214 >gi|126651238|ref|ZP_01723448.1| probable transcriptional regulator, luxR family protein [Bacillus sp. B14905] gi|126592076|gb|EAZ86142.1| probable transcriptional regulator, luxR family protein [Bacillus sp. B14905] Length = 830 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + A LT+RE L DG T+ EIA++L LS TV YL + KL +R +AIA Sbjct: 768 AKAPSMLTQREKDIYDLLVDGITNREIAKRLHLSEGTVRVYLSTIYSKLGVNSRAKAIA 826 >gi|89095961|ref|ZP_01168855.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89089707|gb|EAR68814.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 227 Score = 42.0 bits (97), Expect = 0.065, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ + K++ +R QA+ AI+ G+ Sbjct: 164 LTRRECEVLQLLADGKSNRGIGEALFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGW 223 Query: 234 I 234 + Sbjct: 224 V 224 >gi|326331408|ref|ZP_08197698.1| two component transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325950664|gb|EGD42714.1| two component transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 222 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 57/120 (47%), Gaps = 11/120 (9%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR------ 172 +RLG +G+++ +E + L + + + A G V +E F AA Sbjct: 102 LRLG--ASGFLLKDAEPVALLDAIRVVADGGSLLAPTVTRRVIEEFGSSRRAANPHPRLG 159 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE + G ++ EIA +L +S TV ++ A VKL A +R Q + AI G Sbjct: 160 DLTEREREMVAWVATGRSNAEIAAELVVSPDTVRTHVSRAMVKLHARDRAQLVVFAIESG 219 >gi|325527580|gb|EGD04892.1| two component transcriptional regulator luxr family protein [Burkholderia sp. TJI49] Length = 257 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT R+ L L GY ++ IA L L+ TV+ ++G+ L+A NR AI KA+ Sbjct: 179 QRLTNRQRDVLSLLCVGYPTKVIASTLRLAEGTVDNHIGNVLRVLNAHNRAHAIYKAVAL 238 Query: 232 GYI 234 GY+ Sbjct: 239 GYL 241 >gi|332715487|ref|YP_004442953.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325062172|gb|ADY65862.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 492 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 38/66 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S++ ++LTERE L L DG + +E++++L LS HT+ ++ S K+ R A+ Sbjct: 421 SASLKDLTEREEQILSLICDGCSDKEMSDRLNLSKHTIRNHIASLYGKIGVNRRTAAVIW 480 Query: 228 AIRFGY 233 A G+ Sbjct: 481 ARERGF 486 >gi|291298070|ref|YP_003509348.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567290|gb|ADD40255.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT RE L L G G ++ EIA +LG+ TV ++L S KL +R+ A+ A Sbjct: 155 KALTARERDVLSLTGRGLSNNEIATELGIGYETVKSHLRSVMTKLRLRDRVHAVIVAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLL 217 >gi|268316682|ref|YP_003290401.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] gi|262334216|gb|ACY48013.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] Length = 234 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 26/44 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LT+RE + Q+ G GYT +EI E+L LS TV Y A KL Sbjct: 166 ELTDREMAVFQMLGQGYTIDEITERLNLSRKTVETYRRRAKEKL 209 >gi|153831751|ref|ZP_01984418.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01] gi|148872261|gb|EDL71078.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01] Length = 214 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LQ+ +G ++ EIA+ L +S HT+ ++L + K++ NR QA + A R Sbjct: 156 LTRREVQVLQMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKIEVKNRTQATSWAKR 212 >gi|126434190|ref|YP_001069881.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|126233990|gb|ABN97390.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 162 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 8/114 (7%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-----NLTERETSC 181 G+V+ S L V A G Y V L +++ R +LT RE Sbjct: 47 GFVLKDSSAEELIRAVRAVARGDSYLDPAVTARVLNTYRRAPDMPRALTSVDLTTRELDV 106 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+L G GY++ EIA +L +S TV +++G +KL+ +R AI + G + Sbjct: 107 LRLIGRGYSNAEIATELHISEVTVKSHIGHIFLKLELRDRAAAIVYSYDHGIVA 160 >gi|116073957|ref|ZP_01471219.1| Bacterial regulatory protein, LuxR family [Synechococcus sp. RS9916] gi|116069262|gb|EAU75014.1| Bacterial regulatory protein, LuxR family [Synechococcus sp. RS9916] Length = 92 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 40/67 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S + +L+ RE ++L +G T++EIAE+L +S TV+ ++ + K + NR+ + A Sbjct: 9 SMSVSLSGRELEIIELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGSKNRVALLNWA 68 Query: 229 IRFGYIC 235 + G IC Sbjct: 69 MDHGKIC 75 >gi|21229587|ref|NP_635504.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766463|ref|YP_241225.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|21111059|gb|AAM39428.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571795|gb|AAY47205.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] Length = 210 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 38/71 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F+ + + ERE + L+L GY+++EIA L L+ TV Y+ + KL +R + Sbjct: 140 FRDQQAPRETFNEREVAILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILDKLGTRDRTR 199 Query: 224 AIAKAIRFGYI 234 A+ KAI I Sbjct: 200 AVLKAITLRVI 210 >gi|330501190|ref|YP_004378059.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina NK-01] gi|328915476|gb|AEB56307.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina NK-01] Length = 476 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERET LQ G +++E+A LG+S TV ++ S KL R A KA+ G Sbjct: 416 LSERETQILQRISSGASNKEVARDLGISPSTVRTHVESVFRKLQCSTRAAATLKALTLGV 475 Query: 234 I 234 I Sbjct: 476 I 476 >gi|254388311|ref|ZP_05003546.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] gi|294814339|ref|ZP_06772982.1| Putative erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] gi|326442730|ref|ZP_08217464.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] gi|197702033|gb|EDY47845.1| erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] gi|294326938|gb|EFG08581.1| Putative erythropoiesis-stimulating protein [Streptomyces clavuligerus ATCC 27064] Length = 331 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 6/115 (5%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 PV G V+ T + ++ A + EA A L + + LT +++ Sbjct: 219 IPVSSDNTAAGAVVLTGQGMLTALCALFEATWAAAH------PLAESTTRDPHGLTPQQS 272 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L DG+T + +A++LG+S T +L+A +R +A +A++ G++ Sbjct: 273 VALHLLADGHTDDSVAKRLGVSPRTARRMANDLMERLEARSRFEAGVRAVQRGWL 327 >gi|172041269|ref|YP_001800983.1| LuxR family transcriptional regulator [Corynebacterium urealyticum DSM 7109] gi|171852573|emb|CAQ05549.1| putative transcriptional regulator (LuxR family) [Corynebacterium urealyticum DSM 7109] Length = 291 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 11/104 (10%) Query: 136 SEFLMLANEVIIEA-----HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 S+ MLA V E C Q+++ R L+ RE L G+T Sbjct: 193 SKLRMLAGRVEDETLRRDLEALCTQMVSPV------RVKQTTKLSARELDVLSCVALGHT 246 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E AE++G+ TV +YL S KL A R +A+ A R G + Sbjct: 247 NVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 290 >gi|163746352|ref|ZP_02153710.1| autoinducer-binding transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] gi|161380237|gb|EDQ04648.1| autoinducer-binding transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] Length = 251 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 3/88 (3%) Query: 144 EVIIEAHGACYQVITDFLEL---FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + I HG Q++ + L SS R+LT R+ L+ GDG T+++IA +GL Sbjct: 153 DAIWTEHGRDIQLMNEIAHLKILSLPYSSPNRSLTRRQLEVLEWVGDGKTTQDIALLMGL 212 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + TV +L A L QA+ KA Sbjct: 213 TAATVEKHLRLAREALSVETTAQAVLKA 240 >gi|148658579|ref|YP_001278784.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570689|gb|ABQ92834.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 221 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 37/57 (64%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ERE++ L+L +G T+ EIA +LGL+V TV A++ S KL +R A+ A R Sbjct: 146 LSERESAVLRLMVEGATNREIAVELGLAVKTVEAHVHSILRKLRQPSRRAALVWARR 202 >gi|254976785|ref|ZP_05273257.1| salavaricin two-component response regulator [Clostridium difficile QCD-66c26] gi|255094171|ref|ZP_05323649.1| salavaricin two-component response regulator [Clostridium difficile CIP 107932] gi|255315923|ref|ZP_05357506.1| salavaricin two-component response regulator [Clostridium difficile QCD-76w55] gi|255518582|ref|ZP_05386258.1| salavaricin two-component response regulator [Clostridium difficile QCD-97b34] gi|255651702|ref|ZP_05398604.1| salavaricin two-component response regulator [Clostridium difficile QCD-37x79] gi|306521501|ref|ZP_07407848.1| salavaricin two-component response regulator [Clostridium difficile QCD-32g58] Length = 200 Score = 42.0 bits (97), Expect = 0.066, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT E LQL G + IA++L +S T++ +L KLD + ++AI KAI+ Sbjct: 134 EDLTNMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDKLDVSSSVEAITKAIKM 193 Query: 232 GYI 234 GYI Sbjct: 194 GYI 196 >gi|326446553|ref|ZP_08221287.1| response regulator [Streptomyces clavuligerus ATCC 27064] Length = 206 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + RE L+L DG + +I++KL S T+ L +L NR A+A A+R G Sbjct: 145 GMAPREVDVLRLIADGLDTRQISQKLAYSERTIKNILHGVMTRLQLSNRAHAVAFALREG 204 Query: 233 YI 234 YI Sbjct: 205 YI 206 >gi|282863904|ref|ZP_06272961.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560982|gb|EFB66527.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 231 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 33/53 (62%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R+LTERE L+L DG ++ EIA +L +S+HTV ++ +K +R QA Sbjct: 170 RDLTEREVDVLRLIRDGLSNAEIAGELVVSLHTVKTHVSRVLMKTGCQSRAQA 222 >gi|119510573|ref|ZP_01629703.1| Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119464734|gb|EAW45641.1| Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 87 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S +L++RE + L G T+++IA KL +S TV+ ++ + K NR+ + Sbjct: 6 SQTPVSLSDRELQIIDLVAAGLTNQDIAVKLEISKRTVDNHISNILTKTQTENRVALVRW 65 Query: 228 AIRFGYIC 235 A+++G IC Sbjct: 66 ALQWGKIC 73 >gi|37223230|gb|AAQ90214.1| LuxR [Vibrio mimicus] gi|37223256|gb|AAQ90231.1| LuxR [Aliivibrio fischeri] Length = 224 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 8/145 (5%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE-GGLLPFAGIAFPVRLGFHKNGYV 132 D + + NS PI W + V + S + + GL+ G +FP+ + G + Sbjct: 81 DPIVDYSNSNHSPINWNIFENNAVNKKSPNVIKEAKTSGLI--TGFSFPIHTANNGFGML 138 Query: 133 IFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGD 187 F SE + + + A ++ ++ ++K + + +LT+RE CL A + Sbjct: 139 SFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACE 198 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSA 212 G +S +I++ LG S TV +L +A Sbjct: 199 GKSSWDISKILGCSERTVTFHLTNA 223 >gi|302338339|ref|YP_003803545.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301635524|gb|ADK80951.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 216 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE QL G GY + IAE L LS+ T+ Y KLD N + + +A+ + Sbjct: 152 RLSDREFEVFQLIGQGYDTRLIAESLCLSIKTIETYKSHLKTKLDLKNSTELMQRAVEW 210 >gi|300174919|dbj|BAJ10692.1| hypothetical bacteriocin immunity protein [Streptococcus thermophilus] Length = 117 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G+G +EIA KL +S T+ ++ + KL+ + I+AI KA + GY Sbjct: 56 LTDREKEILVFLGEGNKRKEIASKLFISDRTLTNHIQNILEKLEVDSTIRAIIKARKMGY 115 Query: 234 I 234 I Sbjct: 116 I 116 >gi|320007676|gb|ADW02526.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 281 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE + G T+ AE+LGL TV +YL SA KL A R++A+ A R G Sbjct: 219 RLAPREVDVVACVASGATNAVAAERLGLRPETVKSYLRSAMRKLGAHTRLEAVVAARRAG 278 Query: 233 YI 234 + Sbjct: 279 LL 280 >gi|269837395|ref|YP_003319623.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786658|gb|ACZ38801.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 249 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 7/89 (7%) Query: 153 CYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 ++V+++F +L A L+ RE L G +++EIAE L ++ TV Sbjct: 145 AWRVLSEFRQLTGDDGEAGPASDPKRLPLSVREVEVLDCVAQGLSNKEIAEALFITEQTV 204 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ S KL +R+QA+ A+R G++ Sbjct: 205 KNHMTSVLRKLQVNDRVQAVLCAVRNGWV 233 >gi|196228166|ref|ZP_03127033.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196227569|gb|EDY22072.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 213 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 45/82 (54%), Gaps = 2/82 (2%) Query: 155 QVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 +V LE+F K + ++ LTERET+ L+L +G ++IA++L L+ HT + + Sbjct: 130 RVARRVLEMFSKLNPQGKDYGLTERETAVLELMVEGLGKKQIADRLDLNQHTTDYVMRCI 189 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL A++ A++ G I Sbjct: 190 YKKLHVNGMTAAVSMALKEGII 211 >gi|182412471|ref|YP_001817537.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177839685|gb|ACB73937.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 225 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 4/76 (5%) Query: 155 QVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ L+L ++ AA + L+ +E L L DG T++E+AEKL LS +TV YL Sbjct: 137 EITARVLQLLREGPPAAGDSLAVLSAQERRVLALVADGLTNKEVAEKLRLSDNTVKNYLV 196 Query: 211 SATVKLDAVNRIQAIA 226 S KL R QA A Sbjct: 197 SVFEKLQVKRRSQAAA 212 >gi|126661670|ref|ZP_01732679.1| Two Component Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] gi|126617044|gb|EAZ87904.1| Two Component Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] Length = 201 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G + +IAEKL ++V TV ++ + KL +R QA +A+R G Sbjct: 140 LTERELDVLELIVGGCNNADIAEKLCITVGTVKTHVRNILNKLCVDDRTQAAVRALRSGL 199 Query: 234 I 234 + Sbjct: 200 V 200 >gi|260684735|ref|YP_003216020.1| salavaricin two-component response regulator [Clostridium difficile CD196] gi|260688393|ref|YP_003219527.1| salavaricin two-component response regulator [Clostridium difficile R20291] gi|260210898|emb|CBA66091.1| salavaricin two-component response regulator [Clostridium difficile CD196] gi|260214410|emb|CBE06831.1| salavaricin two-component response regulator [Clostridium difficile R20291] Length = 206 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT E LQL G + IA++L +S T++ +L KLD + ++AI KAI+ Sbjct: 140 EDLTNMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDKLDVSSSVEAITKAIKM 199 Query: 232 GYI 234 GYI Sbjct: 200 GYI 202 >gi|504484|gb|AAC44880.1| AcoK [Klebsiella pneumoniae] Length = 921 Score = 42.0 bits (97), Expect = 0.067, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE LQL +G ++EIA L +S TV ++ + KL +R QA+++A+ Sbjct: 860 LSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEM 917 >gi|330954455|gb|EGH54715.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 240 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 34/65 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ A+ Sbjct: 175 CSRGLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGGAL 234 Query: 230 RFGYI 234 G I Sbjct: 235 CRGLI 239 >gi|328543741|ref|YP_004303850.1| Two component transcriptional regulator, LuxR family [polymorphum gilvum SL003B-26A1] gi|326413485|gb|ADZ70548.1| Two component transcriptional regulator, LuxR family [Polymorphum gilvum SL003B-26A1] Length = 232 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 41/88 (46%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 I A A Y V L + A LT RE L GY EIA +LG+S TV Sbjct: 143 ISASIARYIVRNAQLPAGDEPCEPAIRLTPREADILWGIAKGYRYAEIAAQLGISPQTVT 202 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Y+ + KL NR +A+ +A++ G I Sbjct: 203 GYIKTIYRKLHVTNRGEAVFEAVQQGLI 230 >gi|146277748|ref|YP_001167907.1| autoinducer-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555989|gb|ABP70602.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 233 Score = 42.0 bits (97), Expect = 0.068, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQ G + +I + LG+S TV +L SA KL ++ +QA+ +AI G Sbjct: 169 RLSTREIEVLQWVAAGKSQMDIGDILGISHRTVEVHLRSAREKLGTLSTVQAVGRAIGLG 228 Query: 233 YI 234 + Sbjct: 229 LV 230 >gi|329924379|ref|ZP_08279496.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328940730|gb|EGG37047.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 201 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L G T+ +I++ L L+ TV YL SA KL+A +R QA+ A G+ Sbjct: 141 LSEREIEMLRLTKRGMTTGDISKALFLTRGTVRNYLSSAIQKLEADSRQQAVTIAEDKGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|218247412|ref|YP_002372783.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061251|ref|YP_003139139.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167890|gb|ACK66627.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256591417|gb|ACV02304.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 210 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L +G ++ EIAE L LS +T+ ++ KL +R+QA A+R G Sbjct: 150 LSERELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGL 209 Query: 234 I 234 + Sbjct: 210 V 210 >gi|328880752|emb|CCA53991.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 227 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G ++I +F K +AA LTERE + L G G ++ EIA +L +S T + Sbjct: 136 GVTRRLIEEFAARSKAPGAAASLGALTEREREVMALVGIGLSNGEIARRLVVSPLTAKTH 195 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + A VKL A +R Q + A G + Sbjct: 196 VSRAMVKLGARDRAQLVVLAYESGLV 221 >gi|322391513|ref|ZP_08064982.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145596|gb|EFX40988.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 210 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 2/97 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY++ T+ L + V A G A Q ++ +E + +LT RE LQL Sbjct: 99 GYMLKTASADELLHAVRKVAAGEFAIEQEVSKKVEYNRNHVELHEDLTARERDVLQLIAK 158 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY ++ IA++L +S+ TV ++ + KL +R QA Sbjct: 159 GYENQRIADELFISLKTVKTHVSNILAKLQVSDRTQA 195 >gi|320007637|gb|ADW02487.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 210 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 39/66 (59%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + A+ LT RE LQL G+G ++++I+++L LS TV ++L KL +R Sbjct: 137 LMDRMRTPAQALTRRELEVLQLVGEGLSNQQISKRLFLSQATVKSHLVHIYAKLGVDSRT 196 Query: 223 QAIAKA 228 A+A A Sbjct: 197 SAVAAA 202 >gi|302527637|ref|ZP_07279979.1| predicted protein [Streptomyces sp. AA4] gi|302436532|gb|EFL08348.1| predicted protein [Streptomyces sp. AA4] Length = 316 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 6/85 (7%) Query: 148 EAHGACYQVIT-----DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +A G ++V+ D + L R LT RE + L G+++E I+ LG++V Sbjct: 215 DADGVWWRVLARARRPDGVLLRISRVPDPGPLTGRELDVVGLVSRGWSNERISSALGITV 274 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAK 227 TV +++ S+ VKLD NR A+A+ Sbjct: 275 RTVRSHVESSLVKLDCPNRT-ALAR 298 >gi|227823159|ref|YP_002827131.1| putative two component transcriptional regulator [Sinorhizobium fredii NGR234] gi|227342160|gb|ACP26378.1| putative two component transcriptional regulator [Sinorhizobium fredii NGR234] Length = 213 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 19/123 (15%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVI-IEAHGACY------------------QVITDFLEL 163 RLGF + + + NE I + +G CY ++ + L Sbjct: 80 RLGFDPKIVLFADTNNPAVVNETIRLGVNGLCYHFEDPEILFATLTAVIKGRICIPYTAL 139 Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K + + LT RET L + +G+++ +IA + G+S +TV +L + KL+ NR Sbjct: 140 SKISNPPFQQLTARETELLGMLANGWSNTQIASRTGISENTVKYHLKNLYDKLEVRNRAM 199 Query: 224 AIA 226 A+A Sbjct: 200 AVA 202 >gi|300775044|ref|ZP_07084907.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] gi|300506859|gb|EFK37994.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] Length = 210 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE L+L G +EIA+K +S+ TV ++G+ KL N+++A+ K Sbjct: 151 LTEREKEILELLSQGLLYKEIADKKFISIDTVKKHVGNIYRKLHVNNKVEAVNK 204 >gi|260062757|ref|YP_003195837.1| DNA-binding response regulator [Robiginitalea biformata HTCC2501] gi|88784325|gb|EAR15495.1| DNA-binding response regulator [Robiginitalea biformata HTCC2501] Length = 201 Score = 42.0 bits (97), Expect = 0.069, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 6/79 (7%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +H QVI+ +F+++ A N +ERE ++ G G T + +AEKL ++ T+N + Sbjct: 122 SHDIAKQVIS----MFRRKHYA--NFSERENEIIECLGQGMTYKSMAEKLFVTTSTINFH 175 Query: 209 LGSATVKLDAVNRIQAIAK 227 + + +KLD ++ +A+ K Sbjct: 176 IQNIYLKLDVNSKSEALQK 194 >gi|329934840|ref|ZP_08284881.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329305662|gb|EGG49518.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 209 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ LT RE L+ A DG T +IA +L LS TV YL S K NR +A+ + Sbjct: 143 SAGPNPLTPRECDVLRSAADGATVADIAAELHLSESTVRNYLSSVIGKTGTRNRTEALRE 202 Query: 228 AIRFGYI 234 A G++ Sbjct: 203 ARHHGWL 209 >gi|313500551|gb|ADR61917.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 235 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ERE L+ + G T+ ++A L LS TVN ++ S K +A N+ AIA A G Sbjct: 174 KMSERELEVLKWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRG 233 Query: 233 YI 234 +I Sbjct: 234 WI 235 >gi|290509972|ref|ZP_06549342.1| LuxR family transcriptional regulator, maltose regulon positive regulatory protein [Klebsiella sp. 1_1_55] gi|289776688|gb|EFD84686.1| LuxR family transcriptional regulator, maltose regulon positive regulatory protein [Klebsiella sp. 1_1_55] Length = 921 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE LQL +G ++EIA L +S TV ++ + KL +R QA+++A+ Sbjct: 860 LSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEM 917 >gi|170727337|ref|YP_001761363.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169812684|gb|ACA87268.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 250 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE+ L + +G +S EI ++ TV +L + KL+ NR QAI AIR Sbjct: 187 AEKLTGRESEILAWSSEGKSSWEIGMICSITERTVKFHLKNIYKKLNVQNRAQAIVCAIR 246 Query: 231 FGYI 234 G I Sbjct: 247 LGLI 250 >gi|51891630|ref|YP_074321.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855319|dbj|BAD39477.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 198 Score = 42.0 bits (97), Expect = 0.070, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ G T+ EIAE+L +S TV ++ S KL +R QA A+R G Sbjct: 136 LTPRELDVLRALAHGLTNREIAERLVISETTVKTHISSILSKLQLTDRTQAALWAVREGL 195 Query: 234 I 234 + Sbjct: 196 V 196 >gi|297626956|ref|YP_003688719.1| Two-component system response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922721|emb|CBL57298.1| Two-component system response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 221 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 GA +I ++++ + + R LT RE L+L +G++ +EIAE L +S TV + Sbjct: 137 GAMSTIIREYVQRGQA-NEGDRLLTPREEEILKLIAEGHSGKEIAEMLFISPKTVERHRA 195 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R++ AIR G I Sbjct: 196 NLLEKLGMKDRLELTRYAIRVGLI 219 >gi|295130489|ref|YP_003581152.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|291375667|gb|ADD99521.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|313772396|gb|EFS38362.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313809915|gb|EFS47636.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313830246|gb|EFS67960.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834047|gb|EFS71761.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|314973252|gb|EFT17348.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314975927|gb|EFT20022.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314984055|gb|EFT28147.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|315096164|gb|EFT68140.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|327326081|gb|EGE67871.1| two-component system response regulator [Propionibacterium acnes HL096PA2] gi|327446037|gb|EGE92691.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327447984|gb|EGE94638.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|328760418|gb|EGF73986.1| two-component system response regulator [Propionibacterium acnes HL099PA1] Length = 237 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A Sbjct: 145 SKAEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALA 204 Query: 229 IRFGYI 234 G I Sbjct: 205 YESGLI 210 >gi|188579615|ref|YP_001923060.1| LuxR family transcriptional regulator [Methylobacterium populi BJ001] gi|179343113|gb|ACB78525.1| two component transcriptional regulator, LuxR family [Methylobacterium populi BJ001] Length = 222 Score = 42.0 bits (97), Expect = 0.071, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSS-----AARNLTERETSC 181 GYV+ S F +A+ V G Y + + ++ SS A L+ERE Sbjct: 103 RGYVLKRSAFQNIASAVRAVHAGGIYLDPALPERTAPHRRLSSSVDDAACSTLSERERDI 162 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G+TS+E+A++LG + + A KL +R Q + AI G++ Sbjct: 163 LRFVAFGFTSKEVADRLGATAKAIETQKARACTKLGLASRAQIVQFAILQGWL 215 >gi|331700043|ref|YP_004336282.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954732|gb|AEA28429.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 431 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL--GSATVKLDAVNRIQA 224 R++ A LTERE L L G ++EIA +LG+SVHTV ++ G + V LD A Sbjct: 166 RTATAPALTEREREILDLVAGGSANKEIARRLGISVHTVERHVANGYSFVGLDEGRLKDA 225 Query: 225 IAK 227 +A+ Sbjct: 226 VAE 228 >gi|221215548|ref|ZP_03588511.1| transcriptional regulator, LuxR family protein [Burkholderia multivorans CGD1] gi|221164536|gb|EED97019.1| transcriptional regulator, LuxR family protein [Burkholderia multivorans CGD1] Length = 261 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT R+ L L GY ++ IA L L+ TV+ ++G+ L+A NR AI KA+ GY Sbjct: 181 LTNRQRDVLSLLCVGYPTKVIASTLRLAEGTVDNHIGNVLRVLNAHNRAHAIYKAVALGY 240 Query: 234 I 234 + Sbjct: 241 L 241 >gi|254444034|ref|ZP_05057510.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198258342|gb|EDY82650.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 209 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 4/90 (4%) Query: 147 IEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 IEA A +VI ++ L ++RS A LT +E L+L G ++EIA LG++ T Sbjct: 118 IEAVYAGERVIPPAIKQRLLEQRSRPA--LTAKELEILELVVQGRRNKEIAADLGITEFT 175 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V +L + +KL +R +A KA+ G + Sbjct: 176 VKGHLKTVFLKLQVSDRTEAAIKAVSEGLV 205 >gi|257067453|ref|YP_003153708.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558271|gb|ACU84118.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 255 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 34/64 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA +TERE +L G +++I E+L +SV TV +LG KL NR+Q + Sbjct: 191 SAPEGITEREWDVARLVARGLANQQIGEQLFMSVATVKTHLGRLYHKLQVTNRVQLAIRV 250 Query: 229 IRFG 232 + G Sbjct: 251 LELG 254 >gi|224476942|ref|YP_002634548.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222421549|emb|CAL28363.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 205 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 5/92 (5%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 NE + EA +V+ +R+ LT+RE L L +GY+++EIA +++ Sbjct: 118 NESVFEA-----EVLVKMRNRMNQRAELYEMLTDREMEILLLIANGYSNQEIASASHITI 172 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ + KL+ +R QA+ A + I Sbjct: 173 KTVKTHVSNILSKLEVQDRTQAVIYAFQHDLI 204 >gi|163744865|ref|ZP_02152225.1| transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] gi|161381683|gb|EDQ06092.1| transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] Length = 245 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 7/89 (7%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 F +L + I + G + + E F K L+ RE + L GY+ ++ A + Sbjct: 150 FCLLMHRRIEDLTGTTPLPLPEAPETFAK-------LSPREAEVVNLLAHGYSRQQTAHR 202 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LS+HTV+ Y S KL NR QA A Sbjct: 203 CDLSIHTVSDYAKSGYRKLGIRNRAQAAA 231 >gi|148656116|ref|YP_001276321.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148568226|gb|ABQ90371.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 220 Score = 42.0 bits (97), Expect = 0.072, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 32/65 (49%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE L L GY + IA++L LS TV L KL NR QA A++ Sbjct: 149 AEQLTERERDILTLLAAGYDNRTIAQRLFLSEKTVGNRLSEIFQKLGVSNRTQAALVAVQ 208 Query: 231 FGYIC 235 G I Sbjct: 209 RGLIA 213 >gi|291486102|dbj|BAI87177.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 229 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R QA+ AI+ G+ Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGW 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|307329198|ref|ZP_07608364.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306885228|gb|EFN16248.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 190 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L + DG T+ E+A L LS TV YL +A K A NR +A+ A Sbjct: 127 ASPLTAREREVLHASADGSTNAELARALHLSPGTVRNYLSTAIQKTAARNRAEAVRIARE 186 Query: 231 FGYI 234 G++ Sbjct: 187 KGWL 190 >gi|291299414|ref|YP_003510692.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568634|gb|ADD41599.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 4/106 (3%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-AR--NLTERETSCLQLAGDGY 189 +F + ++ A E ++ A ++I +F++ + R A AR +LT RET L+L +G Sbjct: 115 LFDAVRVVAAGEALL-APTVTRRLIGEFVQSKQPRPVADARLASLTPRETEVLRLVAEGL 173 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++ E+A +L +S TV ++ KL +R QA+ A G + Sbjct: 174 SNPELAARLTVSEETVKTHVSRVLHKLGLRDRTQAVVAAYESGLVV 219 >gi|206577056|ref|YP_002240258.1| transcriptional regulator AcoK [Klebsiella pneumoniae 342] gi|206566114|gb|ACI07890.1| transcriptional regulator AcoK [Klebsiella pneumoniae 342] Length = 921 Score = 42.0 bits (97), Expect = 0.073, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE LQL +G ++EIA L +S TV ++ + KL +R QA+++A+ Sbjct: 860 LSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEM 917 >gi|221199714|ref|ZP_03572757.1| response regulator, LuxR family [Burkholderia multivorans CGD2M] gi|221208681|ref|ZP_03581681.1| response regulator, LuxR family [Burkholderia multivorans CGD2] gi|221171492|gb|EEE03939.1| response regulator, LuxR family [Burkholderia multivorans CGD2] gi|221179953|gb|EEE12357.1| response regulator, LuxR family [Burkholderia multivorans CGD2M] Length = 230 Score = 42.0 bits (97), Expect = 0.074, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT R+ L L GY ++ IA L L+ TV+ ++G+ L+A NR AI KA+ GY Sbjct: 150 LTNRQRDVLSLLCVGYPTKVIASTLRLAEGTVDNHIGNVLRVLNAHNRAHAIYKAVALGY 209 Query: 234 I 234 + Sbjct: 210 L 210 >gi|73538584|ref|YP_298951.1| regulatory protein, LuxR [Ralstonia eutropha JMP134] gi|72121921|gb|AAZ64107.1| regulatory protein, LuxR [Ralstonia eutropha JMP134] Length = 913 Score = 42.0 bits (97), Expect = 0.074, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 31/54 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +LT RE LQ+ G + IAEKL LS TV ++L KL A NR +A+A Sbjct: 851 SLTARELEVLQMLSAGLRNRAIAEKLFLSELTVKSHLRKINAKLGAQNRTEAVA 904 >gi|302332939|gb|ADL23132.1| response regulator [Staphylococcus aureus subsp. aureus JKD6159] Length = 200 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S+EI+EKL L+ TV Y + KL A NR A KA G+ Sbjct: 140 LTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSTIIDKLFADNRFDAWKKANEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|259649548|dbj|BAI41710.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 203 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL +A N LTERE + L G +S++IA L LS TV YL + KL N Sbjct: 129 ELVANMVTAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHN 188 Query: 221 RIQAIAKAIRFGYIC 235 RI+AI A R ++ Sbjct: 189 RIEAIEMAKRNKWLA 203 >gi|239628083|ref|ZP_04671114.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518229|gb|EEQ58095.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 268 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 33/53 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTERE ++L G ++++I EKL +S +TV ++ + KLD VNR Q + Sbjct: 196 LTEREEEIMELIISGISNQQIGEKLFISENTVKKHINNLYRKLDVVNRSQLMT 248 >gi|148272041|ref|YP_001221602.1| putative transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829971|emb|CAN00898.1| putative transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 539 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 37/60 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE + DG T +IA +L +S +TV +++ SA KLDA +R +A+ +A G+ Sbjct: 473 LTDRERLIVACLADGLTVTQIAARLFISPNTVKSHVRSAYRKLDATSRSEAVERARALGH 532 >gi|2873371|gb|AAC38168.1| CarR [Serratia marcescens] Length = 244 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T RET L L G T +E++ LG+S TV ++ ++ KL+ +N AI+KA+ Sbjct: 169 ITPRETEVLFLVSRGNTYKEVSRTLGISEATVKFHINNSVRKLNVINSRHAISKALELN 227 >gi|148549711|ref|YP_001269813.1| autoinducer-binding domain-containing protein [Pseudomonas putida F1] gi|148513769|gb|ABQ80629.1| transcriptional regulator, LuxR family [Pseudomonas putida F1] Length = 235 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ERE L+ + G T+ ++A L LS TVN ++ S K +A N+ AIA A G+ Sbjct: 175 MSERELEVLKWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGW 234 Query: 234 I 234 I Sbjct: 235 I 235 >gi|330005638|ref|ZP_08305316.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3] gi|328536204|gb|EGF62585.1| transcriptional regulator, LuxR family [Klebsiella sp. MS 92-3] Length = 841 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE LQL +G ++EIA L +S TV ++ + KL +R QA+++A+ Sbjct: 780 LSEREFQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSRALEM 837 >gi|289550890|ref|YP_003471794.1| DNA-binding response regulator, LuxR family [Staphylococcus lugdunensis HKU09-01] gi|315658392|ref|ZP_07911264.1| LuxR family DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|289180422|gb|ADC87667.1| DNA-binding response regulator, LuxR family [Staphylococcus lugdunensis HKU09-01] gi|315496721|gb|EFU85044.1| LuxR family DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 200 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G G +S+EIA KL LS TV Y + K++A NR +A KA G+ Sbjct: 140 LTHKEQIVLREIGLGLSSKEIANKLYLSDGTVRNYTSAIIDKMEADNRFEAWKKAFEKGW 199 Query: 234 I 234 + Sbjct: 200 V 200 >gi|258652817|ref|YP_003201973.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556042|gb|ACV78984.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 217 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE ++L +G++++EIA+ L +S TV+ + + KLD +R+ AIR G Sbjct: 155 LTPREADVVKLIAEGHSAQEIADCLSISPRTVDRHRANILEKLDLRDRVDLTRYAIRAGL 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|171915509|ref|ZP_02930979.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 209 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 ARN LT RE L+ GY+++EIA KL +S TV ++ + KL+ +R QA +A+ Sbjct: 141 ARNALTPRELQVLRHIVAGYSNKEIAAKLHMSEATVKLHISNTLDKLNVADRTQAAIEAV 200 Query: 230 RFGYI 234 + G + Sbjct: 201 KRGIV 205 >gi|78213914|ref|YP_382693.1| LuxR family transcriptional regulator [Synechococcus sp. CC9605] gi|78198373|gb|ABB36138.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9605] Length = 92 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE ++L +G T++EIA++L +S TV+ ++ + K + NR+ + A+ G Sbjct: 14 LSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMDNGK 73 Query: 234 IC 235 IC Sbjct: 74 IC 75 >gi|88798051|ref|ZP_01113638.1| Response regulator [Reinekea sp. MED297] gi|88779248|gb|EAR10436.1| Response regulator [Reinekea sp. MED297] Length = 200 Score = 42.0 bits (97), Expect = 0.075, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + R + LT R+ L+L G ++EIA ++ +S TV Y+ + D NR Sbjct: 127 VISARRDESITLTPRQLETLELLALGLPNKEIASQMTISPATVREYVSDLLIAFDCDNRT 186 Query: 223 QAIAKAIRFGYI 234 Q + KA + G+I Sbjct: 187 QLVLKAHQLGFI 198 >gi|290962712|ref|YP_003493894.1| two component response regulator [Streptomyces scabiei 87.22] gi|260652238|emb|CBG75371.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 216 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 6/85 (7%) Query: 156 VITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 V L L ++R+SAA L+ RE +L G T++EI+++L LS+ TV +L Sbjct: 128 VTVRLLRLLEERTSAAAGGVPGSALSARELEVARLVAVGRTNQEISDELCLSLSTVKTHL 187 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 G KL NR++ A A G + Sbjct: 188 GHIHHKLGVRNRVEVAAWAWANGTV 212 >gi|302528147|ref|ZP_07280489.1| predicted protein [Streptomyces sp. AA4] gi|302437042|gb|EFL08858.1| predicted protein [Streptomyces sp. AA4] Length = 240 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 39/77 (50%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H A + T + + R ++ LT RET L L G T+ EIAE +S TV +++ Sbjct: 145 HSAQFFPATPEPRIPRARRRSSDELTLRETQVLGLISIGLTNSEIAEAQSVSAETVRSHV 204 Query: 210 GSATVKLDAVNRIQAIA 226 + KL A NR A+A Sbjct: 205 KNVYRKLGARNRAHAVA 221 >gi|222086818|ref|YP_002545352.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221724266|gb|ACM27422.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 307 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 31/56 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT+RE+ L G ++ +I E LGLS TVN +L VKL NR A KA Sbjct: 245 SLTQRESEVLLWIAKGKSNRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 300 >gi|298241116|ref|ZP_06964923.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554170|gb|EFH88034.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 938 Score = 42.0 bits (97), Expect = 0.076, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G ++++IAE L ++ TV ++ KL+A NR QA+A+A G Sbjct: 874 LSAREQDVLHLLARGASNQDIAEALVVTPGTVKHHITHILSKLEATNRTQAVARAQALGL 933 Query: 234 I 234 + Sbjct: 934 L 934 >gi|297154431|gb|ADI04143.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 213 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE+ L+L +G ++ EI +L +S T+ Y+ KL NR+QA Sbjct: 152 LTERESQVLRLVAEGMSNAEIGRELHMSEKTIKTYVSRVLAKLGCSNRVQA 202 >gi|170077264|ref|YP_001733902.1| LuxR family transcriptional regulator [Synechococcus sp. PCC 7002] gi|169884933|gb|ACA98646.1| transcriptional regulator protein, LuxR family [Synechococcus sp. PCC 7002] Length = 91 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 2/71 (2%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K S AA L+ERE + L G T+ EIA +L +S TV+ ++ + K NR+ Sbjct: 5 KTASEAA--LSEREIEIVDLVAAGLTNHEIAARLDISKRTVDNHISNILTKTATDNRVSL 62 Query: 225 IAKAIRFGYIC 235 + A+++G +C Sbjct: 63 VRWALQWGKVC 73 >gi|149378247|ref|ZP_01895960.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Marinobacter algicola DG893] gi|149357474|gb|EDM45983.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Marinobacter algicola DG893] Length = 220 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + +LT R+ L L DG ++ I + L L+ HTV +L + LD NR + +A+ Sbjct: 154 SLSPEHLTPRQLEVLTLLADGLPNKRICQALDLTEHTVKTHLKAIFTHLDVHNRTECVAQ 213 Query: 228 AIRFGYI 234 A G + Sbjct: 214 ARALGLL 220 >gi|75812851|ref|YP_320468.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705607|gb|ABA25279.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 262 Score = 42.0 bits (97), Expect = 0.076, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + + +E + L+LA G + EIA + +S TV +YL ++ +KL +R+ AI +AIR G Sbjct: 159 DFSNKEITVLKLAAGGMKNNEIANVMYVSEGTVRSYLHNSFIKLGVKDRLNAIREAIRLG 218 Query: 233 YI 234 + Sbjct: 219 IL 220 >gi|328881870|emb|CCA55109.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 229 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E + RS LT RE L L G +++EIAE+L +S TV ++ A KL A +R Sbjct: 152 EAGRARSERLAALTAREREVLVLVAGGLSNDEIAERLDVSPLTVKTHVNRAMAKLGARDR 211 Query: 222 IQAIAKAIRFGYI 234 Q + A G + Sbjct: 212 AQLVVTAYESGLV 224 >gi|327190926|gb|EGE57980.1| putative two-component response regulator protein [Rhizobium etli CNPAF512] Length = 305 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ ++R S LT+RE+ L G + +I E LGLS TVN +L VKL NR Sbjct: 236 EVLRQRFS----LTQRESEVLLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENR 291 Query: 222 IQAIAKA 228 A KA Sbjct: 292 ASAAVKA 298 >gi|297159648|gb|ADI09360.1| putative response regulator [Streptomyces bingchenggensis BCW-1] Length = 221 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE + LA +G ++ EIAE+L +S TV +++ A KL A +R Q + A + G Sbjct: 159 LTAREREVMALAAEGMSNHEIAERLVVSPLTVRSHIHRAMTKLHARDRAQLVVVAYQSGL 218 Query: 234 I 234 + Sbjct: 219 V 219 >gi|311898779|dbj|BAJ31187.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 234 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 36/67 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R S LT+RE L L G ++ EIAE+L +S TV ++ + K +R QA+ Sbjct: 163 RRPSLPDGLTQREAEVLALIAAGLSNAEIAERLFVSPATVKTHINNLFAKTAVRDRAQAV 222 Query: 226 AKAIRFG 232 A A R G Sbjct: 223 AYAFRHG 229 >gi|307141914|gb|ADN34749.1| transcriptional activator CmrR [Pseudomonas sp. CMR12a] Length = 235 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ G G TS EI+ L +S +TVN ++ ++ +KL A N+ A+ +A G Sbjct: 174 LTSREKEVLKWTGSGKTSFEISCLLAISENTVNFHIKNSILKLSAANKTAAVIQAFLTGQ 233 Query: 234 I 234 + Sbjct: 234 L 234 >gi|288920973|ref|ZP_06415266.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288347607|gb|EFC81891.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 226 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + LA +G++++EIA KL +S T ++ A KLDA +R Q + A + G Sbjct: 159 TLTAREREVMILAAEGHSNQEIAAKLVISPLTARTHVHRAMAKLDARDRAQLVVIAYQTG 218 Query: 233 YI 234 + Sbjct: 219 LL 220 >gi|269836639|ref|YP_003318867.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785902|gb|ACZ38045.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 237 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 8/115 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSS-----AARNLTERETS 180 + Y++ SE + + + A G Q+ T L F++ S LTERE Sbjct: 120 DAYLLKNSESSKVIDAIRAVARGESVIEPQLATKLLNEFRRISEFREEETVAGLTEREIQ 179 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+L G +++EIA +L L+ TV L KLD +R QA A+ G I Sbjct: 180 LLRLVASGMSNKEIAAELSLAESTVKNRLSLLFEKLDVKDRTQAAIYALSHGLIT 234 >gi|260436694|ref|ZP_05790664.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] gi|260414568|gb|EEX07864.1| transcriptional regulator, LuxR family [Synechococcus sp. WH 8109] Length = 92 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE ++L +G T++EIA++L +S TV+ ++ + K + NR+ + A+ G Sbjct: 14 LSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMDNGK 73 Query: 234 IC 235 IC Sbjct: 74 IC 75 >gi|258513942|ref|YP_003190164.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257777647|gb|ACV61541.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 824 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 4/83 (4%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 IIE AC ++E + + LTERE L LA +G EIA +L +S TV Sbjct: 740 IIELLEAC----EHYIESLSRAPESTVTLTERELEVLTLAAEGLRRNEIAARLYVSGTTV 795 Query: 206 NAYLGSATVKLDAVNRIQAIAKA 228 +L + KL+ R A+ KA Sbjct: 796 KTHLANIYRKLEVGGRTAAVKKA 818 >gi|258508232|ref|YP_003170983.1| LuxR family two-component response regulator [Lactobacillus rhamnosus GG] gi|257148159|emb|CAR87132.1| Two-component response regulator, LuxR family [Lactobacillus rhamnosus GG] Length = 202 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL +A N LTERE + L G +S++IA L LS TV YL + KL N Sbjct: 128 ELVANMVTAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHN 187 Query: 221 RIQAIAKAIRFGYIC 235 RI+AI A R ++ Sbjct: 188 RIEAIEMAKRNKWLA 202 >gi|256829789|ref|YP_003158517.1| two component LuxR family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256578965|gb|ACU90101.1| two component transcriptional regulator, LuxR family [Desulfomicrobium baculatum DSM 4028] Length = 219 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 3/78 (3%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKL 198 + NE+ I A ++ D+L + R+S NLT RE ++L DG S EIAE L Sbjct: 120 MKNEMFISPKLAKI-IVEDYLLVNHHRNSLPPLHNLTSREKEIVKLIIDGNKSREIAEIL 178 Query: 199 GLSVHTVNAYLGSATVKL 216 +S+ TVN + + VKL Sbjct: 179 FISIKTVNKHRSNILVKL 196 >gi|269925421|ref|YP_003322044.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789081|gb|ACZ41222.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 224 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 7/112 (6%) Query: 130 GYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTERETSCL 182 GY++ + + N V A+G +V++ F + + LT+RE L Sbjct: 109 GYILKDAHADEVVNAVKAVANGESVLAPSIAKKVLSRFTSPSTQPEHPSPVLTDRELDVL 168 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +LA G +++ IA++L LS TV +L + K +R +A+ A++ G I Sbjct: 169 RLAAKGESNKAIAQQLHLSPRTVQVHLSNIFNKFGVASRTEAVLHALKLGLI 220 >gi|254464296|ref|ZP_05077707.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium Y4I] gi|206685204|gb|EDZ45686.1| transcriptional regulator, LuxR family [Rhodobacterales bacterium Y4I] Length = 251 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S R+LT+R+ LQ GDG T+++IA +GL+ T+ +L A L QA+ K Sbjct: 180 ASPKRSLTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARESLAVETTAQAVLK 239 Query: 228 A 228 A Sbjct: 240 A 240 >gi|152994993|ref|YP_001339828.1| response regulator receiver protein [Marinomonas sp. MWYL1] gi|150835917|gb|ABR69893.1| response regulator receiver protein [Marinomonas sp. MWYL1] Length = 304 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 32/59 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT+RE+ L +G T+ EIAE L +S TVN +L KL NR A A+R Sbjct: 241 DLTDRESEVLHWIANGKTNREIAEILEMSPRTVNKHLEQIFPKLGVENRTSAAGVALRV 299 >gi|85711325|ref|ZP_01042384.1| Response regulator, LuxR family protein (CheY, HTH domains) [Idiomarina baltica OS145] gi|85694826|gb|EAQ32765.1| Response regulator, LuxR family protein (CheY, HTH domains) [Idiomarina baltica OS145] Length = 198 Score = 42.0 bits (97), Expect = 0.078, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E L+LA DG + IA++L ++ T YL A K+ A NR++A A G+ Sbjct: 138 LTEKERKALRLAADGLATSAIAKQLFIAEGTARNYLSEAIAKVGAKNRVEAARIAQLKGW 197 Query: 234 I 234 + Sbjct: 198 L 198 >gi|329944777|ref|ZP_08292856.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328529913|gb|EGF56803.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 235 Score = 41.6 bits (96), Expect = 0.078, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + A +G T+EEIA +L +S TV A+L SA ++ A NR+ A R G Sbjct: 173 GLSRRELDVITAAAEGLTTEEIAGRLYISASTVKAHLRSAQERVGARNRVHLAVLAERAG 232 Query: 233 YI 234 + Sbjct: 233 LL 234 >gi|289768783|ref|ZP_06528161.1| two-component system response regulator [Streptomyces lividans TK24] gi|289698982|gb|EFD66411.1| two-component system response regulator [Streptomyces lividans TK24] Length = 332 Score = 41.6 bits (96), Expect = 0.078, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 9/115 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKR--SSAARNLTERET 179 G+++ + F L + V + A G ++I +F+ R AA +LT RET Sbjct: 206 GGFLLKDATFPELLHAVRVVAGGNALLSPEITKRLIAEFVHARGSRLPVPAAGDLTARET 265 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ EIA +L ++ HTV ++ KL+ +R QA+ A G + Sbjct: 266 EVLTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELRDRAQAVIVAYELGLV 320 >gi|302544370|ref|ZP_07296712.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461988|gb|EFL25081.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 232 Score = 41.6 bits (96), Expect = 0.078, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L G ++ EIA +L LS TV ++G KL+ +R+Q + A G Sbjct: 164 RLTEREREVMMLVAQGLSNGEIAGRLVLSEATVKTHVGRILTKLELRDRVQVVVMAYETG 223 Query: 233 YI 234 + Sbjct: 224 LV 225 >gi|271970494|ref|YP_003344690.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513669|gb|ACZ91947.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 217 Score = 41.6 bits (96), Expect = 0.078, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G G ++ EIA + +S HTV ++ + KL +R+QA+ A G Sbjct: 154 LTARERETLELLGRGLSNAEIAATMVVSEHTVKTHVSNVLTKLGLRDRVQAVITAYETGL 213 Query: 234 I 234 I Sbjct: 214 I 214 >gi|226946038|ref|YP_002801111.1| transcriptional regulatory protein AcoK, LuxR family [Azotobacter vinelandii DJ] gi|226720965|gb|ACO80136.1| transcriptional regulatory protein AcoK, LuxR family [Azotobacter vinelandii DJ] Length = 900 Score = 41.6 bits (96), Expect = 0.078, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 36/56 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +L+ERE+ L+L G +++EIA L +SV TV +L + KL +R +A+++A Sbjct: 838 SLSERESQTLRLVAAGQSNKEIARTLDISVETVKWHLKNLYGKLQVTSRTRAMSRA 893 >gi|323358243|ref|YP_004224639.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323274614|dbj|BAJ74759.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 222 Score = 41.6 bits (96), Expect = 0.079, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LTERE+ L+L + ++ EIA +L + TV ++ + KL A +R+QA+ A Sbjct: 157 SLAEPLTERESEVLKLVAEALSNAEIAARLFIGEATVKTHVSNVLQKLGARDRVQAVVLA 216 Query: 229 IRFG 232 R G Sbjct: 217 HRHG 220 >gi|159900552|ref|YP_001546799.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893591|gb|ABX06671.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 250 Score = 41.6 bits (96), Expect = 0.079, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ RE L+L G T++EIA +L +S TV ++ S KL +R QA+ A++ G+ Sbjct: 178 MSPREIEVLELVAAGQTNKEIAARLEISNQTVKNHISSILRKLAVNDRTQAVVFALQRGW 237 Query: 234 I 234 I Sbjct: 238 I 238 >gi|326772247|ref|ZP_08231532.1| two-component system response regulator [Actinomyces viscosus C505] gi|326638380|gb|EGE39281.1| two-component system response regulator [Actinomyces viscosus C505] Length = 230 Score = 41.6 bits (96), Expect = 0.080, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%) Query: 164 FKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 F +R N LTERE +QL G ++ EIA +L + TV ++L K+ Sbjct: 154 FARRQGRVENREALGVLTEREREVVQLLAGGMSNAEIAAELVVETSTVKSHLTRILPKIG 213 Query: 218 AVNRIQAIAKAIRFGYI 234 A +R+QA+ A R G + Sbjct: 214 ARDRVQAVVWAFRNGLV 230 >gi|240142370|ref|YP_002966880.1| LuxR type transcriptional regulator [Methylobacterium extorquens AM1] gi|240012314|gb|ACS43539.1| LuxR type transcriptional regulator [Methylobacterium extorquens AM1] Length = 242 Score = 41.6 bits (96), Expect = 0.080, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L A G +S + AE + ++ T A+ +AT KL A NR QA+ +A++ + Sbjct: 180 LTQREQEVLTWAALGKSSRDTAEIMQITERTALAHAVNATHKLGAANRTQAVVRAMQSKF 239 Query: 234 I 234 I Sbjct: 240 I 240 >gi|226355486|ref|YP_002785226.1| response regulator NarL [Deinococcus deserti VCD115] Length = 218 Score = 41.6 bits (96), Expect = 0.080, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L++A G T++EIA L +S TV +L + KL +R +A+ I+ G Sbjct: 152 DLSPRELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRG 211 Query: 233 YI 234 +I Sbjct: 212 WI 213 >gi|229918078|ref|YP_002886724.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] gi|229469507|gb|ACQ71279.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] Length = 211 Score = 41.6 bits (96), Expect = 0.080, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE LQL +G +++ IA++L +S+ TV ++ + KLD +R QA+ A + Sbjct: 147 SLTAREREILQLMAEGKSNQVIADELFISLKTVKTHVSNILTKLDVYDRTQAVVYAFQHN 206 Query: 233 YIC 235 + Sbjct: 207 LVS 209 >gi|297582619|ref|YP_003698399.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141076|gb|ADH97833.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 208 Score = 41.6 bits (96), Expect = 0.080, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L L G+G +++EIA+ L ++V TV ++ KLD +R QA Sbjct: 146 LTKREREVLALLGEGKSNQEIADTLFIAVKTVKTHVSHILAKLDLQDRTQA 196 >gi|17227478|ref|NP_478660.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134944|dbj|BAB77499.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 223 Score = 41.6 bits (96), Expect = 0.080, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 31/60 (51%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TER+ L+L G ++IA+++ LSV TV Y K NR +AI + GYI Sbjct: 156 TERQIQVLRLLAQGLVFQDIAKEMFLSVSTVKQYASDLYSKWHVKNRYEAIKRGAMLGYI 215 >gi|229588916|ref|YP_002871035.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229360782|emb|CAY47640.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 235 Score = 41.6 bits (96), Expect = 0.080, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE+ L+ G G T+ E++ LG S T+N ++ +A+ KL + +R QA+ A+ G Sbjct: 172 SLTLRESEVLKWTGVGKTTWEMSCILGCSERTINFHIANASRKLGSFSRRQAVGVALAQG 231 Query: 233 YI 234 I Sbjct: 232 LI 233 >gi|167622115|ref|YP_001672409.1| two component LuxR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167352137|gb|ABZ74750.1| two component transcriptional regulator, LuxR family [Shewanella halifaxensis HAW-EB4] Length = 213 Score = 41.6 bits (96), Expect = 0.080, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 57/115 (49%), Gaps = 10/115 (8%) Query: 124 LGFHKNGYVIFTSE--------FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 + F+ +GY++ SE L L E +I + Q++ L K+ S LT Sbjct: 96 IKFNTDGYLLKDSEPEELIEKIHLALQGEFVISS--PLTQILAQSLRSGGKKVSQLEELT 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +RE ++L G +++EIA KLG++ TV ++ + KL +R++ + A+ Sbjct: 154 QRELQIVKLIASGKSNKEIANKLGITDSTVKVHVKNLLKKLTLKSRVEVVLWAVE 208 >gi|154503122|ref|ZP_02040182.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149] gi|153796116|gb|EDN78536.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149] Length = 206 Score = 41.6 bits (96), Expect = 0.080, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 32/52 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +++ERE ++L DG +++EIA +L LS TV YL S KLD +R Q Sbjct: 147 DISERELEIIRLIADGLSNKEIASRLFLSEGTVRNYLSSILDKLDLRDRTQV 198 >gi|146305270|ref|YP_001185735.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina ymp] gi|145573471|gb|ABP83003.1| putative metal dependent phosphohydrolase [Pseudomonas mendocina ymp] Length = 474 Score = 41.6 bits (96), Expect = 0.080, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERET LQ G +++E+A LG+S TV ++ S KL R A KA+ G Sbjct: 414 LSERETQILQRISSGASNKEVARDLGISPSTVRTHVESVFRKLQCSTRAAATLKALTLGV 473 Query: 234 I 234 I Sbjct: 474 I 474 >gi|294629076|ref|ZP_06707636.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292832409|gb|EFF90758.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 213 Score = 41.6 bits (96), Expect = 0.081, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L + DG T +IA +L LS TV YL +A K NR +A+ +A + G+ Sbjct: 153 LTARECDVLNASADGATVADIASRLHLSESTVRNYLSAAIGKTGTRNRTEALREARQRGW 212 Query: 234 I 234 + Sbjct: 213 L 213 >gi|300775501|ref|ZP_07085362.1| possible transcriptional regulator [Chryseobacterium gleum ATCC 35910] gi|300505528|gb|EFK36665.1| possible transcriptional regulator [Chryseobacterium gleum ATCC 35910] Length = 223 Score = 41.6 bits (96), Expect = 0.081, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 36/72 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E ++ L+ E ++ +G++++EIAEKL LS T++ Y+ T KL + Sbjct: 147 EYMDRQKKGQEELSPSEIQLMRFCYEGFSNKEIAEKLNLSTRTIDTYINRLTEKLGLKTK 206 Query: 222 IQAIAKAIRFGY 233 + I + GY Sbjct: 207 LHLIRFCVENGY 218 >gi|184201824|ref|YP_001856031.1| NarL family two-component response regulator [Kocuria rhizophila DC2201] gi|183582054|dbj|BAG30525.1| putative NarL family two-component response regulator [Kocuria rhizophila DC2201] Length = 299 Score = 41.6 bits (96), Expect = 0.081, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L G+G ++ EI ++L LS TV ++ KLDA +R+QA+ A G Sbjct: 235 TLTAREREVFELIGEGCSNGEIMQRLFLSEPTVKTHVSHILSKLDARDRVQAVVIAYETG 294 Query: 233 YI 234 + Sbjct: 295 VV 296 >gi|171912672|ref|ZP_02928142.1| two-component response regulator [Verrucomicrobium spinosum DSM 4136] Length = 210 Score = 41.6 bits (96), Expect = 0.081, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE L G +++EIA LGLS TV ++ + KL A +R QA+ +AIR G + Sbjct: 149 SPREREVLAQMAKGRSNKEIASVLGLSEETVKRHVSNVLEKLGAQDRTQAVTEAIRRGLL 208 >gi|52081142|ref|YP_079933.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52786522|ref|YP_092351.1| hypothetical protein BLi02787 [Bacillus licheniformis ATCC 14580] gi|52004353|gb|AAU24295.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52349024|gb|AAU41658.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 214 Score = 41.6 bits (96), Expect = 0.081, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 57/114 (50%), Gaps = 11/114 (9%) Query: 129 NGYVIFTSEFLMLANEVIIEAH--------GACYQVITDFLELFKKRSSAARNLTERETS 180 +GYV+ S + +L + I+E + +I +L K+ ++ LT RE Sbjct: 100 HGYVLKNSHYRLLY-QAIVEVYRSNLFYKTSVSQDIIDQWLNSEPKKPTSV--LTVREKE 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ GY ++EIA+KL +SV TV + + KLD ++ + I AI+ Y+ Sbjct: 157 ILRFIVLGYANKEIADKLSISVKTVENHKTNMMQKLDLDSKHELIQYAIKNKYL 210 >gi|30019588|ref|NP_831219.1| two-component response regulator yvqC [Bacillus cereus ATCC 14579] gi|206968465|ref|ZP_03229421.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218232967|ref|YP_002366221.1| DNA-binding response regulator [Bacillus cereus B4264] gi|296502111|ref|YP_003663811.1| two-component response regulator yvqC [Bacillus thuringiensis BMB171] gi|29895132|gb|AAP08420.1| Two-component response regulator yvqC [Bacillus cereus ATCC 14579] gi|206737385|gb|EDZ54532.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218160924|gb|ACK60916.1| DNA-binding response regulator [Bacillus cereus B4264] gi|296323163|gb|ADH06091.1| two-component response regulator yvqC [Bacillus thuringiensis BMB171] gi|326939160|gb|AEA15056.1| two-component response regulator yvqC [Bacillus thuringiensis serovar chinensis CT-43] Length = 210 Score = 41.6 bits (96), Expect = 0.081, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 140 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 199 Query: 225 IAKAIR 230 + A R Sbjct: 200 VIYAFR 205 >gi|17232904|ref|NP_489442.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134894|dbj|BAB77450.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 223 Score = 41.6 bits (96), Expect = 0.081, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 31/60 (51%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TER+ L+L G ++IA+++ LSV TV Y K NR +AI + GYI Sbjct: 156 TERQIQVLRLLAQGLVFQDIAKEMFLSVSTVKQYASDLYSKWHVKNRYEAIKRGAMLGYI 215 >gi|284043079|ref|YP_003393419.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947300|gb|ADB50044.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 229 Score = 41.6 bits (96), Expect = 0.082, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 37/68 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A LTERE L+L G ++ EIAE+L ++ TV ++ +KL +R+QA+ Sbjct: 153 RPPALDELTERELEVLELIACGLSNAEIAERLVVAQTTVKTHVARVLMKLGLRDRVQAVV 212 Query: 227 KAIRFGYI 234 A G + Sbjct: 213 LAYEAGVV 220 >gi|10954765|ref|NP_066700.1| hypothetical protein pRi1724_p120 [Agrobacterium rhizogenes] gi|10567429|dbj|BAB16238.1| riorf119 [Agrobacterium rhizogenes] Length = 224 Score = 41.6 bits (96), Expect = 0.082, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 73/179 (40%), Gaps = 17/179 (9%) Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLLPF--------- 115 N E + D +L S + P+I ++ + ET ++ R L F Sbjct: 41 NSYPEEWQDIYLGSHYSRIDPVITEAKRRMETFSWTADDWPARGSSELRRFRDQAIEHGI 100 Query: 116 -AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF--LELFKKRSSAA- 171 +G+ PV F + F S N +++ A V+ L++ + A Sbjct: 101 RSGLTIPVEGSFGSTMMLTFASSEKKAENGKVLDGQKATRAVLAIHYRLKIIAATTIVAP 160 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA--VNRIQAIAK 227 R L+ RE CL A G ++ E A G++ TV YL A KLDA V + AIAK Sbjct: 161 KRLLSPREAMCLMWAAKGKSAPETAMLTGINARTVQHYLDKAREKLDAATVPHLVAIAK 219 >gi|17158788|ref|NP_478299.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134737|dbj|BAB77295.1| alr7652 [Nostoc sp. PCC 7120] Length = 262 Score = 41.6 bits (96), Expect = 0.082, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + + +E + L+LA G + EIA + +S TV +YL ++ +KL +R+ AI +AIR G Sbjct: 159 DFSNKEITVLKLAAGGMKNNEIANVMYVSEGTVRSYLHNSFIKLGVKDRLNAIREAIRLG 218 Query: 233 YI 234 + Sbjct: 219 IL 220 >gi|315271266|gb|ACO45472.2| putative response regulator, NarL [Deinococcus deserti VCD115] Length = 231 Score = 41.6 bits (96), Expect = 0.082, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L++A G T++EIA L +S TV +L + KL +R +A+ I+ G Sbjct: 165 DLSPRELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRG 224 Query: 233 YI 234 +I Sbjct: 225 WI 226 >gi|298243182|ref|ZP_06966989.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556236|gb|EFH90100.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1019 Score = 41.6 bits (96), Expect = 0.082, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ LT RE L+L G TS +IAEKL +S+ TVN ++ S KL +R A Sbjct: 952 STVLAGLTTREIEVLRLLATGMTSAQIAEKLVISILTVNTHVRSIYSKLGVTSRSAATRY 1011 Query: 228 AI 229 A+ Sbjct: 1012 AL 1013 >gi|258539446|ref|YP_003173945.1| LuxR family two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|257151122|emb|CAR90094.1| Two-component response regulator, LuxR family [Lactobacillus rhamnosus Lc 705] Length = 202 Score = 41.6 bits (96), Expect = 0.082, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL +A N LTERE + L G +S++IA L LS TV YL + KL N Sbjct: 128 ELVANMVTAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHN 187 Query: 221 RIQAIAKAIRFGYIC 235 RI+AI A R ++ Sbjct: 188 RIEAIEMAKRNKWLA 202 >gi|302873358|ref|YP_003841991.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium cellulovorans 743B] gi|307688472|ref|ZP_07630918.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Clostridium cellulovorans 743B] gi|302576215|gb|ADL50227.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium cellulovorans 743B] Length = 895 Score = 41.6 bits (96), Expect = 0.082, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L++RE LQ G T+ EIAEK +S++TV +L + KLD +R +A+ KA Sbjct: 835 LSKREIEILQSLEQGATNSEIAEKSFVSINTVKTHLLNIYTKLDVHSRTRAVVKA 889 >gi|239637010|ref|ZP_04678004.1| two-component response regulator [Staphylococcus warneri L37603] gi|239597360|gb|EEQ79863.1| two-component response regulator [Staphylococcus warneri L37603] Length = 200 Score = 41.6 bits (96), Expect = 0.082, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S++IA+KL LS T+ Y S KL+A NR A A G+ Sbjct: 140 LTHKEQVVLREIGNGLSSKDIADKLYLSNGTIRNYTSSIIDKLEAENRFDAWKIATNNGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|219683566|ref|YP_002469949.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|219621216|gb|ACL29373.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] Length = 224 Score = 41.6 bits (96), Expect = 0.082, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 140 MLANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +L+ + +++++G Y+ E L + A +++ E + ++L +G ++ IAE+ Sbjct: 129 LLSGQPLLKSNGMPYETPQQAHERLLMQGKPAIMSMSPNEQAVMELCSEGLSTRTIAEET 188 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 G S TV Y+ A KL A +R +A+A R Sbjct: 189 GDSESTVKTYISRAMRKLRAKSRAEAVASWSR 220 >gi|297585551|ref|YP_003701331.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297144008|gb|ADI00766.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 199 Score = 41.6 bits (96), Expect = 0.082, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 37/64 (57%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTERE ++L +G +++ IAE L L+ TV Y+ + KL+ NR Sbjct: 126 ELIDEVYRSENPLTEREKEVMKLMAEGMSTKLIAETLFLTNGTVRNYISTILDKLEVDNR 185 Query: 222 IQAI 225 I+AI Sbjct: 186 IEAI 189 >gi|37676043|ref|NP_936439.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] gi|37200583|dbj|BAC96409.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] Length = 219 Score = 41.6 bits (96), Expect = 0.082, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LQ G ++ EIA+ L +S HT+ ++L + K+D NR QA A A R Sbjct: 161 LTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKR 217 >gi|330466013|ref|YP_004403756.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328808984|gb|AEB43156.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 232 Score = 41.6 bits (96), Expect = 0.083, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 30/51 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE + G G T+ EIA +L +SV TV AY+ +LD NR+Q Sbjct: 171 GLTERERAVAVALGRGRTNAEIAAELFMSVATVKAYVSRLLTRLDLNNRVQ 221 >gi|284041874|ref|YP_003392214.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946095|gb|ADB48839.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 981 Score = 41.6 bits (96), Expect = 0.083, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +T RE L L +G T+ +IAE L ++ T + ++ KLDA NR +A A A Sbjct: 917 AELGITAREREVLTLLAEGRTNRQIAETLVIAEKTASVHVSRILAKLDARNRGEAAAIAR 976 Query: 230 RFG 232 R G Sbjct: 977 RLG 979 >gi|229822282|ref|YP_002883808.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229568195|gb|ACQ82046.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 216 Score = 41.6 bits (96), Expect = 0.083, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT RE L+L GY++ EIAE L L+ TV ++ + +KL +R +A+ +A+ Sbjct: 153 QELTSRELEILRLLAAGYSNREIAEALHLAEGTVKNHVSTVLLKLGTRDRTRAVLRALHH 212 Query: 232 GYI 234 G + Sbjct: 213 GLL 215 >gi|220913015|ref|YP_002488324.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219859893|gb|ACL40235.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 242 Score = 41.6 bits (96), Expect = 0.083, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 35/67 (52%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A + LT RE QL G ++ EIA L +S TV ++G KL A +R+QA+ A Sbjct: 173 AAVQRLTTREREVFQLIAQGRSNPEIAAGLFVSEATVKTHVGHILAKLGARDRVQAVVIA 232 Query: 229 IRFGYIC 235 G + Sbjct: 233 YETGVVT 239 >gi|319893682|ref|YP_004150557.1| Two-component response regulator [Staphylococcus pseudintermedius HKU10-03] gi|317163378|gb|ADV06921.1| Two-component response regulator [Staphylococcus pseudintermedius HKU10-03] Length = 200 Score = 41.6 bits (96), Expect = 0.084, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Query: 172 RN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 RN LT++E L+ G G TS+EIA+ L LS T+ Y + KL A NR A KA Sbjct: 137 RNPLTDKEQLVLKEIGKGLTSKEIAQTLYLSDGTIRNYTSTIIDKLQADNRFDAWKKAHD 196 Query: 231 FGYI 234 G+I Sbjct: 197 KGWI 200 >gi|229552033|ref|ZP_04440758.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229314610|gb|EEN80583.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 203 Score = 41.6 bits (96), Expect = 0.084, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL +A N LTERE + L G +S++IA L LS TV YL + KL N Sbjct: 129 ELVANMVTAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHN 188 Query: 221 RIQAIAKAIRFGYIC 235 RI+AI A R ++ Sbjct: 189 RIEAIEMAKRNKWLA 203 >gi|227540152|ref|ZP_03970201.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] gi|227240013|gb|EEI90028.1| conserved hypothetical protein [Sphingobacterium spiritivorum ATCC 33300] Length = 465 Score = 41.6 bits (96), Expect = 0.084, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 34/52 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L +G +++E+ EKL +S++TV ++ + +KLD +R QA+ Sbjct: 404 LTEREMDVLMGLWEGLSNQELGEKLFISLNTVKYHVSNLYIKLDIKSRTQAL 455 >gi|24371949|ref|NP_715991.1| LuxR family DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24345792|gb|AAN53436.1|AE015483_2 DNA-binding response regulator, LuxR family [Shewanella oneidensis MR-1] Length = 198 Score = 41.6 bits (96), Expect = 0.084, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L ++E L+ A +G ++ EIA+ L ++ TV YL A KL+A NRI A A + G+ Sbjct: 138 LNDKERRALRFASEGKSTAEIADMLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGW 197 Query: 234 I 234 + Sbjct: 198 L 198 >gi|51892059|ref|YP_074750.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855748|dbj|BAD39906.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 230 Score = 41.6 bits (96), Expect = 0.084, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L G T+++IAE+L +S+ TV A+ + KLD + ++ AI+ G Sbjct: 164 QLTEREREVLTLIAHGLTNQQIAERLFISIKTVQAHRANLMEKLDLHDAVELTKFAIKSG 223 Query: 233 YI 234 + Sbjct: 224 LL 225 >gi|33866798|ref|NP_898357.1| transcriptional regulator [Synechococcus sp. WH 8102] gi|33639399|emb|CAE08783.1| possible transcriptional regulator [Synechococcus sp. WH 8102] Length = 91 Score = 41.6 bits (96), Expect = 0.084, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE ++L +G T++EIA++L +S TV+ ++ + K + NR+ + A+ G Sbjct: 14 LSAREIEIIELVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMDNGK 73 Query: 234 IC 235 IC Sbjct: 74 IC 75 >gi|332520649|ref|ZP_08397111.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4] gi|332044002|gb|EGI80197.1| regulatory protein LuxR [Lacinutrix algicola 5H-3-7-4] Length = 212 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE + L + +T++EIA+KL LS HT+ +Y + KL+ N AI+ GY+ Sbjct: 154 REVEVISLIAEEFTTQEIADKLFLSKHTIESYRKNLITKLNVRNLAGLTKYAIKKGYVS 212 >gi|297197881|ref|ZP_06915278.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297146901|gb|EDY61655.2| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 256 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET+ L L GD T+ I +LG+S TV+ ++ + KL +R+ + A R G Sbjct: 188 LTPRETTVLLLLGDALTAVSIGRRLGISERTVHKHIANIYRKLGTHDRVSTVLHAQRLGL 247 Query: 234 I 234 + Sbjct: 248 V 248 >gi|284045055|ref|YP_003395395.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949276|gb|ADB52020.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 364 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RET L+ G G ++IA +L LS TV +L + KL AV+R QA+ A G+ Sbjct: 304 LSARETEVLKRLGQGKVYKQIAHELELSTSTVRTHLHNIYGKLGAVDRAQAVLIATERGW 363 Query: 234 I 234 I Sbjct: 364 I 364 >gi|228951917|ref|ZP_04114015.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807840|gb|EEM54361.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 206 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 136 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 195 Query: 225 IAKAIR 230 + A R Sbjct: 196 VIYAFR 201 >gi|297563570|ref|YP_003682544.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848018|gb|ADH70038.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 219 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G ++ EIA L +S TV ++ KLD +R+QA+ A R G Sbjct: 158 LTPRELEVLRLIANGLSNGEIAASLFISQETVKTFVSRILTKLDLRDRVQAVVYAYRQGL 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|322436726|ref|YP_004218938.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321164453|gb|ADW70158.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 209 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L DG +++IA L ++ TVN ++ + + KL A +R A+ A+R G Sbjct: 146 KLTDRELDVLKLIRDGRRNKQIASDLKIAEATVNFHIKNISQKLQANDRTHAVMIALRRG 205 Query: 233 YI 234 + Sbjct: 206 LL 207 >gi|296331918|ref|ZP_06874383.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673530|ref|YP_003865202.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150996|gb|EFG91880.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411774|gb|ADM36893.1| two-component response regulator (paired with YfiJ) [Bacillus subtilis subsp. spizizenii str. W23] Length = 220 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 38/68 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K++ +LTERE L G G ++EIAEKL ++ TV ++ + KL +R QA Sbjct: 149 KEKPKELLDLTEREMEVLAELGYGLNNKEIAEKLFITEGTVKNHVSNIISKLSVRDRTQA 208 Query: 225 IAKAIRFG 232 ++R+G Sbjct: 209 AIYSVRYG 216 >gi|190893145|ref|YP_001979687.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190698424|gb|ACE92509.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] Length = 305 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ ++R S LT+RE+ L G + +I E LGLS TVN +L VKL NR Sbjct: 236 EVLRQRFS----LTQRESEVLLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENR 291 Query: 222 IQAIAKA 228 A KA Sbjct: 292 ASAAVKA 298 >gi|183602522|ref|ZP_02963887.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|241190596|ref|YP_002967990.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196002|ref|YP_002969557.1| two-component system response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218163|gb|EDT88809.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|240248988|gb|ACS45928.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250556|gb|ACS47495.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178334|gb|ADC85580.1| hypothetical protein BIF_00316 [Bifidobacterium animalis subsp. lactis BB-12] gi|295793583|gb|ADG33118.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis V9] Length = 228 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 1/92 (1%) Query: 140 MLANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +L+ + +++++G Y+ E L + A +++ E + ++L +G ++ IAE+ Sbjct: 133 LLSGQPLLKSNGMPYETPQQAHERLLMQGKPAIMSMSPNEQAVMELCSEGLSTRTIAEET 192 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 G S TV Y+ A KL A +R +A+A R Sbjct: 193 GDSESTVKTYISRAMRKLRAKSRAEAVASWSR 224 >gi|126348327|emb|CAJ90048.1| putative two component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 221 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 2/84 (2%) Query: 153 CYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++I +F K+ ++A LTERE + L G G ++EEIA +L +S T ++ Sbjct: 132 TRRLIAEFAARSKEPAAAGELARLTEREREVMALVGIGLSNEEIARRLVVSPLTAKTHVS 191 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 VKL A +R Q + A G + Sbjct: 192 RTMVKLGARDRAQLVVLAYESGLV 215 >gi|83594724|ref|YP_428476.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577638|gb|ABC24189.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 260 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+ A G TS EIAE G+S +V +L +A KL ++ A+ KA+ G Sbjct: 188 LSPREQEMLRWAALGKTSWEIAEIAGISTKSVEFHLDNAKKKLGTYSKTHAVVKALTLGL 247 Query: 234 IC 235 + Sbjct: 248 VT 249 >gi|27367916|ref|NP_763443.1| transcriptional regulator VpsT [Vibrio vulnificus CMCP6] gi|27359489|gb|AAO08433.1| Transcriptional regulator VpsT [Vibrio vulnificus CMCP6] Length = 210 Score = 41.6 bits (96), Expect = 0.085, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LQ G ++ EIA+ L +S HT+ ++L + K+D NR QA A A R Sbjct: 152 LTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKR 208 >gi|318061908|ref|ZP_07980629.1| two component system response regulator [Streptomyces sp. SA3_actG] gi|318078461|ref|ZP_07985793.1| two component system response regulator [Streptomyces sp. SA3_actF] Length = 224 Score = 41.6 bits (96), Expect = 0.086, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LTERET L L G ++ EIAE L L+ TV ++ KL +R QA+ A Sbjct: 157 KALTERETEVLTLVARGRSNAEIAESLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYES 216 Query: 232 GYIC 235 G + Sbjct: 217 GLVA 220 >gi|37223205|gb|AAQ90198.1| LuxR [Aliivibrio fischeri] Length = 222 Score = 41.6 bits (96), Expect = 0.086, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 61/126 (48%), Gaps = 8/126 (6%) Query: 86 PIIWQSIQEETVI-ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT-SEFLMLAN 143 PI W +++T+ ES + E GL+ G +FP+ + G + F S+ + + Sbjct: 91 PINWNVFEKKTIKKESPNVIKEAQESGLI--TGFSFPIHTASNGFGMLSFAHSDKDIYTD 148 Query: 144 EVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + + A ++ ++ ++K R + LT+RE CL A +G ++ +I++ LG Sbjct: 149 SLFLHASTNVPLMLPSLVDNYQKINLTRKKSDSILTKREKECLAWASEGKSTWDISKILG 208 Query: 200 LSVHTV 205 S TV Sbjct: 209 CSERTV 214 >gi|67924631|ref|ZP_00518043.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501] gi|67853530|gb|EAM48877.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501] Length = 90 Score = 41.6 bits (96), Expect = 0.086, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L L G T+ EIA+KL +S TV+ ++ + K NR++ + +++G Sbjct: 11 SLSGREMQILDLVSTGLTNLEIAQKLEISKRTVDNHISNILTKTKTDNRVELVRWGLQWG 70 Query: 233 YIC 235 +C Sbjct: 71 KVC 73 >gi|333026466|ref|ZP_08454530.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332746318|gb|EGJ76759.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 212 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 3/90 (3%) Query: 149 AHGACYQVITDFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A ++I DF A + LTERET L L G ++ EIAE L L+ TV Sbjct: 119 APSVTRRLIADFARQRPAPGKPALRLKALTERETEVLTLVARGRSNAEIAESLVLAEQTV 178 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++ KL +R QA+ A G + Sbjct: 179 KTHVSRVLTKLGLRDRAQAVVFAYESGLVA 208 >gi|328885551|emb|CCA58790.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 249 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L DG +++EIA +L +S TV ++ + K +R QA+ A + G Sbjct: 180 GLTERETEVLVLVADGLSNQEIAGRLRISTATVKTHINNLFAKTGVRDRAQAVRYAYQHG 239 Query: 233 YI 234 + Sbjct: 240 LV 241 >gi|319947541|ref|ZP_08021771.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319746229|gb|EFV98492.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 211 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%) Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 +PV L GY++ TS E ++ A + + A ++ +E K +LT R Sbjct: 91 YPV-LDAGAKGYMLKTSSAEEILRAIHKVEQGELAIETEVSQKVEYRKNHVELHDDLTAR 149 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 150 ERDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLVS 207 >gi|294813520|ref|ZP_06772163.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] gi|326442073|ref|ZP_08216807.1| response regulator receiver protein [Streptomyces clavuligerus ATCC 27064] gi|294326119|gb|EFG07762.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] Length = 252 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L+L G + IAE+LG+ V TV ++ S KL +R QA+ A G Sbjct: 183 GLTPRETEVLRLIATGLDNTGIAEELGIGVQTVKNHITSVFAKLGLRDRAQAVISAYESG 242 Query: 233 YIC 235 + Sbjct: 243 LVS 245 >gi|239983155|ref|ZP_04705679.1| LuxR family transcriptional regulator [Streptomyces albus J1074] gi|291454986|ref|ZP_06594376.1| LuxR-family transcriptional regulator [Streptomyces albus J1074] gi|291357935|gb|EFE84837.1| LuxR-family transcriptional regulator [Streptomyces albus J1074] Length = 275 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G T+ +A +LG+ TV YL SA KL A R++A+ A R G Sbjct: 214 LTPREVDVLVCVAGGATNAAVAGRLGVRPETVKGYLRSAMRKLGAHTRLEAVVAARRQGL 273 Query: 234 I 234 + Sbjct: 274 L 274 >gi|228938652|ref|ZP_04101257.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228957814|ref|ZP_04119555.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228971533|ref|ZP_04132157.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978144|ref|ZP_04138522.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407] gi|229126854|ref|ZP_04255866.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4] gi|229144139|ref|ZP_04272554.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24] gi|229149739|ref|ZP_04277969.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550] gi|229177946|ref|ZP_04305318.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W] gi|229189620|ref|ZP_04316635.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876] gi|228593884|gb|EEK51688.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876] gi|228605434|gb|EEK62883.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W] gi|228633770|gb|EEK90369.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550] gi|228639358|gb|EEK95773.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24] gi|228656794|gb|EEL12620.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4] gi|228781616|gb|EEM29816.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407] gi|228788192|gb|EEM36147.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228801896|gb|EEM48772.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228821028|gb|EEM67048.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 206 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 136 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 195 Query: 225 IAKAIR 230 + A R Sbjct: 196 VIYAFR 201 >gi|297560098|ref|YP_003679072.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844546|gb|ADH66566.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 229 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE + G ++ EIAE+L +S+ TV A++ SA KLD R+Q Sbjct: 168 LTEREREVAEAVTAGLSNAEIAERLYMSMGTVKAHVSSALTKLDLSGRVQ 217 >gi|220909912|ref|YP_002485223.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866523|gb|ACL46862.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 245 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +A LT+RE L+L G+++ EIA KL ++V TV ++ + KL A +R QA A+ Sbjct: 180 SADPLTQRELEVLELIVKGHSNAEIASKLYITVGTVKTHVRNILNKLCADDRTQAAVLAL 239 Query: 230 RFGYIC 235 R G + Sbjct: 240 RSGLVT 245 >gi|218296777|ref|ZP_03497483.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] gi|218242866|gb|EED09400.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] Length = 207 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +EL ++ + A L+ RE L+L G + +E+AEKLG+S TV Y KL + Sbjct: 135 MELVRESAEEA-PLSPREEEVLRLLAQGLSHKEVAEKLGISEKTVATYRERGMEKLGLAS 193 Query: 221 RIQAIAKAIRFGYI 234 R + + A R G+I Sbjct: 194 RSELLRYAARKGWI 207 >gi|144899411|emb|CAM76275.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 189 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 1/86 (1%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A G +V T E + A LT RE L A G T+ E + LG+S TV + Sbjct: 103 ADGGIVKVFTKVSE-GRSTQDPAPALTAREREVLLWAAQGKTAWETSAILGISSKTVEFH 161 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+ KL A + Q I A R G + Sbjct: 162 LGNCGRKLGAATKAQTILAAARRGLL 187 >gi|52842163|ref|YP_095962.1| transcriptional regulator LuxR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|40644088|emb|CAE46907.1| putative transcriptional regulator [Legionella pneumophila] gi|52629274|gb|AAU28015.1| transcriptional regulator LuxR [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 223 Score = 41.6 bits (96), Expect = 0.087, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE C+ L G +++EI L LS T+ +Y+ + K+D N+ + + KA+ GY Sbjct: 147 LTDREHECVFLLIRGKSAKEIGALLSLSKRTIESYIENIKNKMDCRNKAEILVKAVLNGY 206 >gi|319948854|ref|ZP_08022967.1| regulatory protein, LuxR [Dietzia cinnamea P4] gi|319437456|gb|EFV92463.1| regulatory protein, LuxR [Dietzia cinnamea P4] Length = 203 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L L G ++E+IA LS++TV +Y+ A K+ R QA+A A++ G Sbjct: 139 GLSPREAEMLALIAQGLSNEDIATACYLSINTVKSYIRDAYRKIGVTTRPQAVAWALKNG 198 Query: 233 Y 233 + Sbjct: 199 F 199 >gi|302529844|ref|ZP_07282186.1| hypothetical protein SSMG_06226 [Streptomyces sp. AA4] gi|302438739|gb|EFL10555.1| hypothetical protein SSMG_06226 [Streptomyces sp. AA4] Length = 212 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L L DG + EIAE+L S T+ + + V+ D NR A+A A+R G Sbjct: 151 RLQSREVEILGLLADGLGTVEIAERLAYSERTIKNIISTLLVRFDLRNRSHAVAYALRTG 210 Query: 233 YI 234 I Sbjct: 211 II 212 >gi|298241780|ref|ZP_06965587.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554834|gb|EFH88698.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 236 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 38/66 (57%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A + LT RE L+L +G T++EIA+KL +S+ TV A+ + KL + Q + A Sbjct: 167 KALQTLTGREMEVLKLVAEGSTNQEIADKLVISIKTVQAHRSNMMEKLGLHDITQLVRFA 226 Query: 229 IRFGYI 234 + +G I Sbjct: 227 LHYGLI 232 >gi|169827849|ref|YP_001698007.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168992337|gb|ACA39877.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 145 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L ERE + LQL +G T+ EI+++L L+ T+ YL ++ KL +R QA A G+ Sbjct: 85 LNEREVAVLQLVKEGLTTHEISKQLFLTKGTIRNYLSTSIQKLQVESRQQAAQIASDKGW 144 Query: 234 I 234 + Sbjct: 145 L 145 >gi|149928347|ref|ZP_01916588.1| hypothetical protein LMED105_00475 [Limnobacter sp. MED105] gi|149822932|gb|EDM82177.1| hypothetical protein LMED105_00475 [Limnobacter sp. MED105] Length = 203 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +TER+ S L G ++ EIA+ LGLS TV ++ S +L+A NR++A Sbjct: 135 ITERQVSVLYRISKGESNHEIAQNLGLSPETVKTHVRSILARLNARNRLEA 185 >gi|56696847|ref|YP_167209.1| ATP-dependent transcription regulator LuxR [Ruegeria pomeroyi DSS-3] gi|56678584|gb|AAV95250.1| autoinducer-binding transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 249 Score = 41.6 bits (96), Expect = 0.088, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 32/57 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT R+ LQ GDG T+++IA +GL+ TV +L A L QA+ KA Sbjct: 182 RSLTRRQREALQWVGDGKTTQDIAILMGLTAATVEKHLRLAREALSVETTAQAVLKA 238 >gi|325918348|ref|ZP_08180482.1| ATP-dependent transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] gi|325535427|gb|EGD07289.1| ATP-dependent transcriptional regulator [Xanthomonas vesicatoria ATCC 35937] Length = 922 Score = 41.6 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 39/65 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A+ +ERE L GY++++IA L LS +TV +L + KLDA +R A+A+A+ Sbjct: 844 ASDVFSERELEVLAQLARGYSNKQIARHLHLSQNTVKFHLKNLYRKLDARSRESALAQAL 903 Query: 230 RFGYI 234 + G + Sbjct: 904 QRGVL 908 >gi|294813229|ref|ZP_06771872.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441661|ref|ZP_08216395.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325828|gb|EFG07471.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 36/70 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R+ LTERE + L G ++ EIA +L LS TV ++G KL+ +R+Q Sbjct: 148 EPRNKEVDRLTEREREVMMLVAQGLSNGEIAGRLVLSEATVKTHVGRILTKLNLRDRVQV 207 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 208 VVLAYETGLV 217 >gi|288924067|ref|ZP_06418126.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288344590|gb|EFC79060.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 171 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 30/55 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A L +RE LQL DG T+ +I +LGLS TV Y+ S KL +R QA Sbjct: 107 AMATLNQREREILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQA 161 >gi|210633863|ref|ZP_03297878.1| hypothetical protein COLSTE_01795 [Collinsella stercoris DSM 13279] gi|210159032|gb|EEA90003.1| hypothetical protein COLSTE_01795 [Collinsella stercoris DSM 13279] Length = 862 Score = 41.6 bits (96), Expect = 0.089, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 3/84 (3%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 +++ Y V L+L + AA L +RE C+++A G TS +IA +LG+ TV Sbjct: 295 LDSSSGQYPVPEMALQLQRAFPDAA--LADRERHCIEMALAGMTSAQIAAELGIKSVTVR 352 Query: 207 AYLGSATVKLDAVNRIQAIAKAIR 230 +YL A KL V+ ++A+A +R Sbjct: 353 SYLVRAYRKL-GVSDLKALAGCVR 375 >gi|85706357|ref|ZP_01037451.1| nitrate/nitrite regulatory protein [Roseovarius sp. 217] gi|85669130|gb|EAQ23997.1| nitrate/nitrite regulatory protein [Roseovarius sp. 217] Length = 216 Score = 41.6 bits (96), Expect = 0.089, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L DG T+ +I+ +LGLS +TV YL + KLD +R AIAK + Sbjct: 156 SLTRREHEILGLLVDGLTNFQISARLGLSENTVKYYLKAIYQKLDVNSRGGAIAKYVAGT 215 Query: 233 Y 233 Y Sbjct: 216 Y 216 >gi|318059598|ref|ZP_07978321.1| LuxR family transcriptional regulator [Streptomyces sp. SA3_actG] gi|318077946|ref|ZP_07985278.1| LuxR family transcriptional regulator [Streptomyces sp. SA3_actF] Length = 946 Score = 41.6 bits (96), Expect = 0.090, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 165 KKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + RS A R LTE+E +L G TS+E+A +L LS TV+A+L + KLD +R Q Sbjct: 878 RGRSRAVRVGLTEQEMYVARLVATGATSKEVAGRLFLSPRTVDAHLRAVFRKLDISSRKQ 937 >gi|330720547|gb|EGG98827.1| two component transcriptional regulator2C LuxR family protein [gamma proteobacterium IMCC2047] Length = 151 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 2/86 (2%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + G Y V ++FLEL ++ + LT+RE L + G ++EIAE L +S TV+ + Sbjct: 63 SQGGRY-VASEFLELIQQGQQVS-ALTDRELQVLNMIVAGKINKEIAEALFISPKTVDKH 120 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 S KL+ + Q +A+A++ G I Sbjct: 121 RTSLMSKLEVHSVAQLLARALKDGLI 146 >gi|297243640|ref|ZP_06927571.1| response regulator of two-component system [Gardnerella vaginalis AMD] gi|296888391|gb|EFH27132.1| response regulator of two-component system [Gardnerella vaginalis AMD] Length = 260 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 39/67 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +SA LT+RE L G +++EIA+KL +S+ TV ++ K+DA +R+QA+ Sbjct: 192 NSAIPELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIDARDRVQAVVF 251 Query: 228 AIRFGYI 234 A G + Sbjct: 252 AYENGLV 258 >gi|284047067|ref|YP_003397407.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951288|gb|ADB54032.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 200 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L +G ++ IA+ L+ TV YL SA KL A R++A A G+ Sbjct: 140 LTERELEVLRLVREGLSAGAIADAAHLAPGTVRNYLSSAMAKLAAPTRVEAARIAWEEGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|300771877|ref|ZP_07081748.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300761263|gb|EFK58088.1| DNA-binding response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 459 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 34/52 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L +G +++E+ EKL +S++TV ++ + +KLD +R QA+ Sbjct: 398 LTEREMDVLMGLWEGLSNQELGEKLFISLNTVKYHVSNLYIKLDIKSRTQAL 449 >gi|256395183|ref|YP_003116747.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361409|gb|ACU74906.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 224 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LTERE L L G ++EEIA++L LS T ++ + VKL A +R Q + A Sbjct: 156 KALTEREREVLALVAAGLSNEEIADRLVLSPLTAKTHVSRSMVKLGARDRAQLVVLAYES 215 Query: 232 G 232 G Sbjct: 216 G 216 >gi|254385641|ref|ZP_05000964.1| two component system response regulator [Streptomyces sp. Mg1] gi|194344509|gb|EDX25475.1| two component system response regulator [Streptomyces sp. Mg1] Length = 224 Score = 41.6 bits (96), Expect = 0.090, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 5/91 (5%) Query: 149 AHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 A +++ F + +S RN LTERE + L G ++ EIA +L LS Sbjct: 127 APSTTRRLLDRFAPMLPTTTSEPRNKEIERLTEREREVMLLVAQGLSNGEIAARLVLSEA 186 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++G KL +R+Q + A G + Sbjct: 187 TVKTHVGRILTKLGLRDRVQVVVLAYETGLV 217 >gi|322516517|ref|ZP_08069435.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322124986|gb|EFX96400.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 200 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L++RE L + G T++EIAE L LS TV Y+ + KL+A NR +A+ Sbjct: 139 LSQREQEVLAMVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLNAGNRTEAV 190 >gi|320162421|ref|YP_004175646.1| putative LysR family transcriptional regulator [Anaerolinea thermophila UNI-1] gi|319996275|dbj|BAJ65046.1| putative LysR family transcriptional regulator [Anaerolinea thermophila UNI-1] Length = 455 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+L G +++EIA+ L +S +TV +L + K+ V+R +A AIR G Sbjct: 9 LSEREIEILRLVATGASNKEIAQALSISPNTVKVHLRNIFAKIGVVSRTEATLYAIRNG 67 >gi|298253154|ref|ZP_06976946.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis 5-1] gi|297532549|gb|EFH71435.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis 5-1] Length = 246 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F+ L K RS + L +E + L G T+ +IA +LGL +T+N ++ KL Sbjct: 147 FIRLSKSRSRSV--LPPQELKIMDLLSKGCTTNQIAAQLGLMPNTINTHIHRIYKKLHVS 204 Query: 220 NRIQAIA 226 NR+QAI+ Sbjct: 205 NRVQAIS 211 >gi|297531388|ref|YP_003672663.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297254640|gb|ADI28086.1| two component transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 224 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I L +S TV ++ S KL+ +R QA+ AI+ G+ Sbjct: 161 LTRRECEVLQLLADGKSNRAIGGALYISEKTVKNHVSSILQKLNVNDRTQAVVVAIKNGW 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|296452018|ref|ZP_06893733.1| salavaricin two component response regulator [Clostridium difficile NAP08] gi|296879587|ref|ZP_06903566.1| salavaricin two component response regulator [Clostridium difficile NAP07] gi|296259209|gb|EFH06089.1| salavaricin two component response regulator [Clostridium difficile NAP08] gi|296429390|gb|EFH15258.1| salavaricin two component response regulator [Clostridium difficile NAP07] Length = 206 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT E LQL G + IA++L +S T++ +L KLD + ++AI KAI+ Sbjct: 140 EDLTSMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDKLDVSSSVEAITKAIQM 199 Query: 232 GYI 234 GYI Sbjct: 200 GYI 202 >gi|56965136|ref|YP_176868.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56911380|dbj|BAD65907.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 209 Score = 41.6 bits (96), Expect = 0.091, Method: Compositional matrix adjust. Identities = 27/105 (25%), Positives = 53/105 (50%), Gaps = 3/105 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLA 185 YV+ TS + +A + +G +V + F + LT+RE L+L Sbjct: 99 TSYVLKTSSAMQIAEAIRKTYNGESVLDAKVQGQMISAFTANVPLHQALTKRELEILKLM 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +G T+++I+E+L +++ TV ++ KL+ +R QA+ A++ Sbjct: 159 SEGKTNQQISEELYITIKTVKTHVSHILAKLEVEDRTQAVIYALK 203 >gi|268316683|ref|YP_003290402.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] gi|262334217|gb|ACY48014.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] Length = 242 Score = 41.6 bits (96), Expect = 0.092, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 26/43 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LT+RE + QL G GY+ EEI ++L LS TV Y A KL Sbjct: 177 LTDREMAVFQLLGQGYSIEEIMQRLNLSRKTVETYRRRAKEKL 219 >gi|302531265|ref|ZP_07283607.1| response regulator [Streptomyces sp. AA4] gi|302440160|gb|EFL11976.1| response regulator [Streptomyces sp. AA4] Length = 218 Score = 41.6 bits (96), Expect = 0.092, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G ++ EIAE L LS TV ++G KLD +R+QA+ A G Sbjct: 153 LTDREREVLVLIAKGMSNVEIAETLFLSEATVKTHVGRILSKLDLRDRVQAVVLAYETG 211 >gi|237794891|ref|YP_002862443.1| transcriptional regulator, LuxR family [Clostridium botulinum Ba4 str. 657] gi|229263459|gb|ACQ54492.1| transcriptional regulator, LuxR family [Clostridium botulinum Ba4 str. 657] Length = 865 Score = 41.6 bits (96), Expect = 0.092, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 45/85 (52%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L N+ IE I + +++ + LTERE +++ +G ++++I ++L + Sbjct: 770 LKNDKDIELTSKEDNFIKNLIDIMEPEKVKGELLTEREKEVMEILFEGASNKQIGKRLNI 829 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAI 225 S+ TV ++ + KL NR+QA+ Sbjct: 830 SLATVKTHMINIYSKLQVSNRVQAV 854 >gi|182416174|ref|YP_001821240.1| LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177843388|gb|ACB77640.1| transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 102 Score = 41.6 bits (96), Expect = 0.092, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L + GDG ++ AE+LG+S HTVN + + KL ++ Q + A++ GYI Sbjct: 16 EQMVLSIVGDGSDDQQAAERLGISPHTVNTHRKAIMAKLKLHHKGQLMLYALQHGYI 72 >gi|294498204|ref|YP_003561904.1| two-component response regulator LiaR [Bacillus megaterium QM B1551] gi|294348141|gb|ADE68470.1| two-component response regulator LiaR [Bacillus megaterium QM B1551] Length = 208 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 41/80 (51%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V + +K S LT RE L L G T++EIA++L +++ TV ++ + Sbjct: 128 EVTGKMMSKMRKPSLPHEELTAREMEILLLMTQGKTNQEIADELFIALKTVKTHVSNLLS 187 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLD +R QA+ A + + Sbjct: 188 KLDVQDRTQAVIYAFKHKLV 207 >gi|269965326|ref|ZP_06179446.1| putative transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] gi|269829972|gb|EEZ84201.1| putative transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] Length = 218 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L++ +G ++ EIA+ L +S HT+ ++L + KL+ NR QA + A R Sbjct: 160 LTRREVQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKR 216 >gi|159900998|ref|YP_001547245.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894037|gb|ABX07117.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 213 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE S L G +++EIA L L+ TV Y+ + KL +R QA AI+ G Sbjct: 149 SLTERERSVLDGIVGGLSNKEIARSLHLTEGTVKGYVSTILTKLAVADRTQAALYAIKHG 208 Query: 233 Y 233 + Sbjct: 209 F 209 >gi|50842410|ref|YP_055637.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|50840012|gb|AAT82679.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|315105495|gb|EFT77471.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] Length = 218 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A Sbjct: 145 SKAEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALA 204 Query: 229 IRFGYI 234 G I Sbjct: 205 YESGLI 210 >gi|21225375|ref|NP_631154.1| transcriptional regulator [Streptomyces coelicolor A3(2)] gi|256783604|ref|ZP_05522035.1| transcriptional regulator [Streptomyces lividans TK24] gi|289767486|ref|ZP_06526864.1| transcriptional regulator [Streptomyces lividans TK24] gi|7688309|emb|CAB89765.1| putative transcriptional regulator [Streptomyces coelicolor A3(2)] gi|289697685|gb|EFD65114.1| transcriptional regulator [Streptomyces lividans TK24] Length = 932 Score = 41.6 bits (96), Expect = 0.093, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R SAAR LTE+E + +LA +G T+ EI +L +S HTV +L VKL R + Sbjct: 862 RGSAAR-LTEQELNVARLAREGLTNREIGARLFISAHTVEYHLRKVFVKLGIKRRTE 917 >gi|307825893|ref|ZP_07656108.1| two component transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] gi|307733012|gb|EFO03874.1| two component transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] Length = 214 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + L G T +E++E L LS TVN Y KL N ++ I AI+FGY Sbjct: 149 LSQREAEVVTLILQGKTIKEMSEMLVLSDKTVNTYRYRLYSKLHVKNDVELIRLAIKFGY 208 Query: 234 I 234 I Sbjct: 209 I 209 >gi|295696562|ref|YP_003589800.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295412164|gb|ADG06656.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 220 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G ++ EIA++L +S HTV ++ + KL NR+QA A AIR G Sbjct: 151 LTSRELEVLGYLSTGASNREIAKQLFISEHTVRNHIQNILGKLHLTNRVQAAAYAIRQG 209 >gi|182411868|ref|YP_001816934.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177839082|gb|ACB73334.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 234 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 35/59 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE QL G+GY + +IA KL LSV T+++Y +KL + + + AI++ Sbjct: 169 TLSDREMEVFQLIGNGYGTRQIASKLNLSVKTIDSYREHLKLKLRLESGTELVRHAIQW 227 >gi|168182481|ref|ZP_02617145.1| transcriptional regulator, LuxR family [Clostridium botulinum Bf] gi|182674457|gb|EDT86418.1| transcriptional regulator, LuxR family [Clostridium botulinum Bf] Length = 865 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 22/85 (25%), Positives = 45/85 (52%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L N+ IE I + +++ + LTERE +++ +G ++++I ++L + Sbjct: 770 LKNDKDIELTSKEDNFIKNLIDIMEPEKVKGELLTEREKEVMEILFEGASNKQIGKRLNI 829 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAI 225 S+ TV ++ + KL NR+QA+ Sbjct: 830 SLATVKTHMINIYSKLQVSNRVQAV 854 >gi|119960873|ref|YP_948224.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119947732|gb|ABM06643.1| putative two-component system response regulator [Arthrobacter aurescens TC1] Length = 237 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 34/68 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++A LT RE QL G ++ EIA L LS TV ++G KL A +R+Q + Sbjct: 167 AAAVERLTAREREVFQLIAQGQSNPEIAAGLFLSEATVKTHVGHILAKLGARDRVQVVVI 226 Query: 228 AIRFGYIC 235 A G + Sbjct: 227 AYETGVVA 234 >gi|91223299|ref|ZP_01258565.1| putative transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|91192112|gb|EAS78375.1| putative transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] Length = 210 Score = 41.6 bits (96), Expect = 0.093, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L++ +G ++ EIA+ L +S HT+ ++L + KL+ NR QA + A R Sbjct: 152 LTRREVQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKR 208 >gi|326334186|ref|ZP_08200409.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae bacterium Broad-1] gi|325947977|gb|EGD40094.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae bacterium Broad-1] Length = 212 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 9/110 (8%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------LTERETS 180 GY++ S +A + + A G + +E FK+ + R+ LT+RE Sbjct: 96 GYLLKDSSIDQVAQAIRVVADGQSLISPSMAAKLMEEFKQMARPDRSPVPGPKLTDRELE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L L G + EIA++L +S +TV ++ + KL A +R++A+ A+R Sbjct: 156 VLGLVAKGLNNREIAKRLFISENTVKNHVRNILEKLQAHSRMEAVMYAVR 205 >gi|313801796|gb|EFS43030.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|314962915|gb|EFT07015.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] Length = 218 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A Sbjct: 145 SKAEQLTAREIEVAKLGARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALA 204 Query: 229 IRFGYI 234 G I Sbjct: 205 YESGLI 210 >gi|290954780|ref|YP_003485962.1| luxR family regulator [Streptomyces scabiei 87.22] gi|260644306|emb|CBG67389.1| putative luxR family regulator [Streptomyces scabiei 87.22] Length = 196 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT R+ S L+ G T EEIA++L LS TV Y+ S K+ A NRI A+ A + Sbjct: 136 LTLRQLSVLEHLDRGDTMEEIADRLCLSEGTVRNYISSVVAKMGARNRIDALRIARDLQW 195 Query: 234 I 234 I Sbjct: 196 I 196 >gi|226228812|ref|YP_002762918.1| putative NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226092003|dbj|BAH40448.1| putative NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 207 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 33/66 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT RE L L G +++ I L +S TV ++ + KLDA +R A+ A Sbjct: 140 SGEEGLTSRELQILHLVAGGLSNKRITSSLAISEDTVKGHVSNILSKLDANDRTHAVTLA 199 Query: 229 IRFGYI 234 IR G I Sbjct: 200 IRRGVI 205 >gi|168699457|ref|ZP_02731734.1| two-component transcriptional regulator, LuxR family protein [Gemmata obscuriglobus UQM 2246] Length = 213 Score = 41.6 bits (96), Expect = 0.094, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+ GY++++IA +L +SV +V Y G A KL +R+ + A+R G Sbjct: 149 GLSEREVEVLKQLTAGYSNKQIAARLEVSVKSVETYKGRAMEKLGIRSRVGLVQFAVRQG 208 Query: 233 YIC 235 ++ Sbjct: 209 WLS 211 >gi|256397512|ref|YP_003119076.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363738|gb|ACU77235.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 239 Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 4/92 (4%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + A +++ F + S A LT+RE L L G ++ EIA KL LS Sbjct: 143 VVAPSTTRRLLDKFAPMLPSESEPAPPELTVLTDREHEVLLLVAQGMSNAEIAGKLFLSE 202 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++G +KL +R+QA+ A G + Sbjct: 203 ATVKTHVGRILMKLGLRDRVQAVVLAYETGLV 234 >gi|149916071|ref|ZP_01904594.1| hypothetical protein RAZWK3B_00550 [Roseobacter sp. AzwK-3b] gi|149810145|gb|EDM69993.1| hypothetical protein RAZWK3B_00550 [Roseobacter sp. AzwK-3b] Length = 79 Score = 41.6 bits (96), Expect = 0.095, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L + E L++ +G+ ++EIA KL ++ V + LDA NR A+AKAIR G Sbjct: 19 LPDTEEKTLRMIAEGHINKEIALKLDVTEMHVKMIVRRICKALDARNRAHAVAKAIRLGL 78 Query: 234 I 234 I Sbjct: 79 I 79 >gi|320158186|ref|YP_004190564.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O] gi|319933498|gb|ADV88361.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O] Length = 214 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LQ G ++ EIA+ L +S HT+ ++L + K+D NR QA A A R Sbjct: 156 LTRREIQVLQFLKAGGSNMEIADSLFISEHTIKSHLYNIFRKIDVKNRTQATAWAKR 212 >gi|312200653|ref|YP_004020714.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231989|gb|ADP84844.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 203 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S LT RE L A DG T +IA +L LS TV YL +A K A NR++A+ Sbjct: 137 ASGPSPLTGRERDVLVAARDGATVADIAGRLFLSEGTVRNYLSAAIAKTGARNRLEALRT 196 Query: 228 AIRFGYI 234 A G++ Sbjct: 197 AEESGWL 203 >gi|237785039|ref|YP_002905744.1| LuxR family transcriptional regulator [Corynebacterium kroppenstedtii DSM 44385] gi|237757951|gb|ACR17201.1| transcriptional regulator, LuxR family [Corynebacterium kroppenstedtii DSM 44385] Length = 279 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 11/104 (10%) Query: 136 SEFLMLANEV-----IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 S+ MLAN V E C Q++ R L+ RE L G+T Sbjct: 181 SKLRMLANRVESDDLRQELEQLCDQMVQPV------RVKQTTKLSARELDVLACVALGHT 234 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E AE++G+ TV +YL S KL A R +A+ A R G + Sbjct: 235 NVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIGAL 278 >gi|189218591|ref|YP_001939232.1| LuxR family transcriptional regulator [Methylacidiphilum infernorum V4] gi|189185449|gb|ACD82634.1| Transcriptional regulator LuxR family [Methylacidiphilum infernorum V4] Length = 251 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 37/67 (55%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ K + + LT RE L+ DG T+ EI+ L +S TV +L + +KLD NR Sbjct: 177 EVEKPAKESPQALTARELEILKWIMDGKTNWEISCILKISEATVKFHLKNIFLKLDVQNR 236 Query: 222 IQAIAKA 228 QA+A A Sbjct: 237 CQAVATA 243 >gi|153206810|ref|ZP_01945651.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat Q177'] gi|165924176|ref|ZP_02220008.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334] gi|212212538|ref|YP_002303474.1| response regulator [Coxiella burnetii CbuG_Q212] gi|212218401|ref|YP_002305188.1| response regulator [Coxiella burnetii CbuK_Q154] gi|120577173|gb|EAX33797.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat Q177'] gi|165916380|gb|EDR34984.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334] gi|212010948|gb|ACJ18329.1| response regulator [Coxiella burnetii CbuG_Q212] gi|212012663|gb|ACJ20043.1| response regulator [Coxiella burnetii CbuK_Q154] Length = 214 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 11/132 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFK 165 +EG LLP + VR G++ +S+ L + G Y I + L L K Sbjct: 84 MEGDLLPMRLLEVGVR------GFITKSSDTTELEQAIRAVYKGQRYISSAIANRLALSK 137 Query: 166 KRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++A + L++RE L L G +E IA++L ++ TVN++ KL N + Sbjct: 138 TTTAATSPFKKLSDREMEVLLLLAKGKKAEAIAKQLHITGKTVNSHRYRIFEKLGVKNDV 197 Query: 223 QAIAKAIRFGYI 234 + I A+++G + Sbjct: 198 ELIKLAVQYGLV 209 >gi|170721041|ref|YP_001748729.1| LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169759044|gb|ACA72360.1| transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 82 Score = 41.6 bits (96), Expect = 0.096, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G +S EI + L TVN ++G+ K D R+ A+ KAIR+G Sbjct: 19 LTPREQQVLLWCAYGKSSWEIGQILQCQESTVNFHVGNILRKFDVSTRVAAVIKAIRYGM 78 Query: 234 I 234 + Sbjct: 79 L 79 >gi|326799448|ref|YP_004317267.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326550212|gb|ADZ78597.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 209 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 9/78 (11%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 CYQ E+F K S +L +RE L+LA T ++IA K+ LS+ T++ Y + Sbjct: 135 CYQ------EMFNKDSI---DLKDREREFLELACSDLTYQQIASKMFLSIKTIDGYRAAL 185 Query: 213 TVKLDAVNRIQAIAKAIR 230 K +R+ + +AIR Sbjct: 186 FEKFQVKSRVGLVLEAIR 203 >gi|297191011|ref|ZP_06908409.1| two component system DNA binding response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297150723|gb|EDY65386.2| two component system DNA binding response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 213 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 38/66 (57%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + A LT+RE LQL GDG ++ +I+++L LS TV ++L KL +R Sbjct: 140 LMDRMRTPAEALTKRELEVLQLVGDGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRT 199 Query: 223 QAIAKA 228 A+A A Sbjct: 200 SAVAAA 205 >gi|239931777|ref|ZP_04688730.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] Length = 182 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + A Sbjct: 115 SKAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYA 174 Query: 229 IRFG 232 I G Sbjct: 175 IERG 178 >gi|229108996|ref|ZP_04238597.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15] gi|228674465|gb|EEL29708.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15] Length = 196 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 126 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 185 Query: 225 IAKAIR 230 + A R Sbjct: 186 VIYAFR 191 >gi|255657144|ref|ZP_05402553.1| salavaricin two-component response regulator [Clostridium difficile QCD-23m63] Length = 200 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT E LQL G + IA++L +S T++ +L KLD + ++AI KAI+ Sbjct: 134 EDLTSMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDKLDVSSSVEAITKAIQM 193 Query: 232 GYI 234 GYI Sbjct: 194 GYI 196 >gi|162453707|ref|YP_001616074.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] gi|161164289|emb|CAN95594.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] Length = 242 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R+ LT RE L + G T+ EIA++L +S+ TV A++ S KL A NR++ Sbjct: 173 RAQPGEALTAREEEVLLIVARGRTNAEIADELHISLSTVKAHVASLMTKLGARNRVE 229 >gi|283782679|ref|YP_003373433.1| transcriptional regulator, LuxR family [Gardnerella vaginalis 409-05] gi|283441376|gb|ADB13842.1| transcriptional regulator, LuxR family [Gardnerella vaginalis 409-05] Length = 246 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 2/67 (2%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F+ L K RS + L +E + L G T+ +IA +LGL +T+N ++ KL Sbjct: 147 FIRLSKSRSRSV--LPPQELKIMDLLSKGCTTNQIAAQLGLMPNTINTHIHRIYKKLHVS 204 Query: 220 NRIQAIA 226 NR+QAI+ Sbjct: 205 NRVQAIS 211 >gi|271963063|ref|YP_003337259.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506238|gb|ACZ84516.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 215 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G G T++EIA KL +S T ++ +KL A +R Q + A G Sbjct: 150 LTDREREVLSLVGTGMTNDEIAGKLFMSPATAKTHVSRTMMKLHARDRAQLVVIAYESGL 209 Query: 234 I 234 + Sbjct: 210 V 210 >gi|237722799|ref|ZP_04553280.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|229447321|gb|EEO53112.1| transcriptional regulator [Bacteroides sp. 2_2_4] Length = 257 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 31/51 (60%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 T RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI Sbjct: 197 TNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAI 247 >gi|228907170|ref|ZP_04071032.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL 200] gi|228852502|gb|EEM97294.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL 200] Length = 199 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 129 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 188 Query: 225 IAKAIR 230 + A R Sbjct: 189 VIYAFR 194 >gi|86358918|ref|YP_470810.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86283020|gb|ABC92083.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 305 Score = 41.6 bits (96), Expect = 0.097, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ ++R + LT+RE+ L G + +I E LGLS TVN +L VKL NR Sbjct: 236 EMLRQRFA----LTQRESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENR 291 Query: 222 IQAIAKA 228 A KA Sbjct: 292 ASAAVKA 298 >gi|330888767|gb|EGH21428.1| regulatory protein, LuxR [Pseudomonas syringae pv. mori str. 301020] Length = 74 Score = 41.6 bits (96), Expect = 0.098, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 39/68 (57%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +E+ + S A+NLT+RE L+ + +G T+ +IA L L T++ ++ SA K+ N Sbjct: 1 MEIKFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCN 60 Query: 221 RIQAIAKA 228 + A +A Sbjct: 61 KTAAAVQA 68 >gi|330868990|gb|EGH03699.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. 0893_23] gi|331011382|gb|EGH91438.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 74 Score = 41.6 bits (96), Expect = 0.098, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 39/68 (57%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +E+ + S A+NLT+RE L+ + +G T+ +IA L L T++ ++ SA K+ N Sbjct: 1 MEIKFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCN 60 Query: 221 RIQAIAKA 228 + A +A Sbjct: 61 KTAAAVQA 68 >gi|320322629|gb|EFW78722.1| regulatory protein, LuxR [Pseudomonas syringae pv. glycinea str. B076] Length = 77 Score = 41.6 bits (96), Expect = 0.098, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 39/68 (57%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +E+ + S A+NLT+RE L+ + +G T+ +IA L L T++ ++ SA K+ N Sbjct: 4 MEIKFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCN 63 Query: 221 RIQAIAKA 228 + A +A Sbjct: 64 KTAAAVQA 71 >gi|311900106|dbj|BAJ32514.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 244 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 31/58 (53%) Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L DG + EIA KL S T+ + + T + NR A+A A+R GYI Sbjct: 187 REVDVLRLVADGMDTGEIAVKLLYSERTIKNIIHTVTTRFQLRNRAHAVAYALREGYI 244 >gi|313105659|ref|ZP_07791923.1| hypothetical protein PA39016_000100019 [Pseudomonas aeruginosa 39016] gi|310878425|gb|EFQ37019.1| hypothetical protein PA39016_000100019 [Pseudomonas aeruginosa 39016] Length = 128 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 14/94 (14%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + I AHG T FL + L+ RE C+ G TS+E+A LG+ Sbjct: 1 MTTTATITAHG-----FTGFL---------GKGLSLRELQCVLGIAAGRTSKELARDLGM 46 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV + +AT KL R +A+A+R G I Sbjct: 47 QPGTVGKRVLAATTKLGVTRRAALVAEAMRRGLI 80 >gi|307727417|ref|YP_003910630.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1003] gi|307587942|gb|ADN61339.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 220 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 47/108 (43%), Gaps = 6/108 (5%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-----AARNLTERETSCLQL 184 GYV S +L V I A A Y + D + R++ R L+ RE L+L Sbjct: 104 GYVTKASAPDVLVEAVRIVARRASY-LSPDISQALALRNAFSEGPPGRQLSAREFEVLRL 162 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 GYT IAEKLGLS TV + K A N +Q A R G Sbjct: 163 LVQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGADNGVQLAQMASRLG 210 >gi|289425275|ref|ZP_06427052.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289154253|gb|EFD02941.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|313792254|gb|EFS40355.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313838624|gb|EFS76338.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|315078129|gb|EFT50180.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|327453031|gb|EGE99685.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] Length = 218 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A Sbjct: 145 SKAEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALA 204 Query: 229 IRFGYI 234 G I Sbjct: 205 YESGLI 210 >gi|282854131|ref|ZP_06263468.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282583584|gb|EFB88964.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|313813050|gb|EFS50764.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|314923106|gb|EFS86937.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314966874|gb|EFT10973.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981217|gb|EFT25311.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315091787|gb|EFT63763.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315103290|gb|EFT75266.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327327699|gb|EGE69475.1| two-component system response regulator [Propionibacterium acnes HL103PA1] Length = 218 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A Sbjct: 145 SKAEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALA 204 Query: 229 IRFGYI 234 G I Sbjct: 205 YESGLI 210 >gi|257482151|ref|ZP_05636192.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625831|ref|ZP_06458785.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647709|ref|ZP_06479052.1| regulatory protein, LuxR [Pseudomonas syringae pv. aesculi str. 2250] gi|330987557|gb|EGH85660.1| regulatory protein, LuxR [Pseudomonas syringae pv. lachrymans str. M301315] Length = 77 Score = 41.6 bits (96), Expect = 0.098, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 39/68 (57%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +E+ + S A+NLT+RE L+ + +G T+ +IA L L T++ ++ SA K+ N Sbjct: 4 MEIKFSQPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCN 63 Query: 221 RIQAIAKA 228 + A +A Sbjct: 64 KTAAAVQA 71 >gi|88801325|ref|ZP_01116853.1| putative nitrate/nitrite DNA-binding response regulator [Polaribacter irgensii 23-P] gi|88781983|gb|EAR13160.1| putative nitrate/nitrite DNA-binding response regulator [Polaribacter irgensii 23-P] Length = 221 Score = 41.6 bits (96), Expect = 0.098, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE + L+L ++ EIAEK+ +S HTV +Y KL+ N + A+++ Sbjct: 160 SLTEREKNVLRLVSKELSTSEIAEKMNISHHTVESYRKKLLRKLNVKNSVGLAIYAVKYN 219 Query: 233 YI 234 + Sbjct: 220 LV 221 >gi|291443200|ref|ZP_06582590.1| LuxR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291346147|gb|EFE73051.1| LuxR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 920 Score = 41.6 bits (96), Expect = 0.099, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 6/87 (6%) Query: 147 IEAHGACYQVITDFLELF-----KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 I A C +V ++ E + KK A L+++E +LA +GYT++EIA++L ++ Sbjct: 834 IGAEALCARVAPEYREKYPVSARKKSPKALSALSKQERRVAELASEGYTNQEIADQLFIT 893 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228 TV +L KL+ V R Q ++++ Sbjct: 894 KSTVEQHLTRVFRKLN-VQRRQELSQS 919 >gi|284041827|ref|YP_003392167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946048|gb|ADB48792.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 220 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R+LTERE L+L G ++ E+A L LS TV ++ S KL +R+QA+ A Sbjct: 153 RDLTERELDVLRLVAQGLSNAELAAYLVLSEATVKTHVSSVLRKLGLRDRVQAVVLAYDV 212 Query: 232 G 232 G Sbjct: 213 G 213 >gi|239816173|ref|YP_002945083.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239802750|gb|ACS19817.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 262 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ G S+EI+ +LG+S TVNA++ + KL +R QA++ A G Sbjct: 201 TLTAREREVLRFVARGCVSKEISVRLGISGQTVNAHIKNIYKKLHVHSRAQAVSLATHTG 260 Query: 233 YI 234 + Sbjct: 261 QL 262 >gi|196232781|ref|ZP_03131632.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196223241|gb|EDY17760.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 215 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L+L G G T+ EIA KL L + T++ Y K+D N + + AIR+ Sbjct: 152 RLTDRELEVLELIGRGRTTREIATKLELGIATIDTYRARIKEKMDFNNASELLHFAIRW 210 >gi|254381144|ref|ZP_04996509.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194340054|gb|EDX21020.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 219 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE L L G G ++ EIA +L +S+ T YL KLDA +R+Q + A G Sbjct: 155 ITAREREVLTLVGRGLSNTEIAGELCISIATAKTYLTRLLAKLDARDRVQLVILAYEAGL 214 Query: 234 IC 235 + Sbjct: 215 VA 216 >gi|17230043|ref|NP_486591.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|75906706|ref|YP_321002.1| LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|17131643|dbj|BAB74250.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|75700431|gb|ABA20107.1| transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 87 Score = 41.6 bits (96), Expect = 0.099, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + L G T++EIA KL +S TV+ ++ + K NR+ + A+++G Sbjct: 12 LSDRELQIIDLVAAGLTNQEIAAKLEISKRTVDNHISNILDKTRTENRVALVRWALQWGK 71 Query: 234 IC 235 +C Sbjct: 72 VC 73 >gi|239939770|ref|ZP_04691707.1| LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239986253|ref|ZP_04706917.1| LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 887 Score = 41.6 bits (96), Expect = 0.100, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 6/87 (6%) Query: 147 IEAHGACYQVITDFLELF-----KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 I A C +V ++ E + KK A L+++E +LA +GYT++EIA++L ++ Sbjct: 801 IGAEALCARVAPEYREKYPVSARKKSPKALSALSKQERRVAELASEGYTNQEIADQLFIT 860 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKA 228 TV +L KL+ V R Q ++++ Sbjct: 861 KSTVEQHLTRVFRKLN-VQRRQELSQS 886 >gi|284035632|ref|YP_003385562.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283814925|gb|ADB36763.1| two component transcriptional regulator, LuxR family [Spirosoma linguale DSM 74] Length = 218 Score = 41.6 bits (96), Expect = 0.100, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 5/79 (6%) Query: 156 VITDFLELFKK-----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ +++ KK R+ L+ +E LQ DG +S EIAEKL LSV TV+ + Sbjct: 135 ILSGYMQQLKKGDRHGRAERQSKLSNKEKEILQFLVDGMSSREIAEKLQLSVRTVDNHRA 194 Query: 211 SATVKLDAVNRIQAIAKAI 229 + +L N + + A+ Sbjct: 195 NMMRRLQVRNAAELVRMAV 213 >gi|326383391|ref|ZP_08205078.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326197797|gb|EGD54984.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 219 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A LT+RET L+ G +S +IA +L +S TV ++G+A KL NR++ A Sbjct: 152 AAVPTLTQRETEVLRHVAKGLSSRQIATRLEISPRTVENHVGAALRKLQLGNRVELTRYA 211 Query: 229 IRFG 232 I G Sbjct: 212 IEHG 215 >gi|307324677|ref|ZP_07603883.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889559|gb|EFN20539.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 28/64 (43%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 166 KRSS--AARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +RSS AAR LTERE + DG + EIA++L +SV TV A+ S KL Sbjct: 152 RRSSREAARKQLSALTERERETARAIADGLGNPEIAQRLHISVATVKAHTSSLFAKLAVE 211 Query: 220 NRIQ 223 NR+Q Sbjct: 212 NRVQ 215 >gi|298241134|ref|ZP_06964941.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554188|gb|EFH88052.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 220 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 8/115 (6%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLT 175 VR G H GY++ + + + V + A G A + + +E + S A LT Sbjct: 96 VRAGAH--GYLLKGAGLDEVLHAVRVVAAGGSLLEPAVTERLLGSMEQLLRSGSIAEMLT 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ERE L G++++ I ++L L+ TV + KL A NR QA+AKA++ Sbjct: 154 ERERMILTYMAQGFSNKMIGQELHLAERTVKFHTTILFQKLQASNRAQAVAKALQ 208 >gi|298250649|ref|ZP_06974453.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548653|gb|EFH82520.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 219 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L+L G + EIA++L +S+ TV AYL S KL +R + IA A + G Sbjct: 149 RLTNREFAVLRLIIQGTRNSEIAQRLAISIKTVEAYLTSLYGKLGVQSRAEVIALAQKQG 208 Query: 233 YI 234 + Sbjct: 209 LL 210 >gi|297195878|ref|ZP_06913276.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152976|gb|EFH32075.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 221 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 7/105 (6%) Query: 137 EFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGY 189 E L+ A ++E G ++I +F K + A LTERE + L G G Sbjct: 111 EELLRAVRAVVEGDALLSPGVTRRLIAEFAARSKGPAEAQGLGELTEREREVMALVGIGL 170 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EEIA +L +S T ++ VKL A +R Q + A G + Sbjct: 171 SNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|229819768|ref|YP_002881294.1| LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565681|gb|ACQ79532.1| transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 967 Score = 41.6 bits (96), Expect = 0.10, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L DG ++ +I E+L +S TV+ ++ + KL R +A+ A R G Sbjct: 903 LTDRERDVLRLVADGLSNRQIGERLYISPKTVSVHISNLLAKLGVARRAEAVDVAHRRGL 962 Query: 234 I 234 + Sbjct: 963 L 963 >gi|269956412|ref|YP_003326201.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305093|gb|ACZ30643.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 234 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G ++ EIA L ++ TV Y+ KLD +R+QA+ A + G Sbjct: 158 LTPRELDVLRLLAEGLSNAEIAAALVITRETVKTYVSRILTKLDLRDRVQAVVWAYQTGL 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|225351360|ref|ZP_03742383.1| hypothetical protein BIFPSEUDO_02954 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157704|gb|EEG70987.1| hypothetical protein BIFPSEUDO_02954 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 233 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L ERE + LA +G+T+ EI+EK+ +S TV A++ SA KL + R+Q Sbjct: 171 LPEREREAVILAAEGFTNAEISEKMFISERTVKAHISSAADKL-CMGRVQ 219 >gi|225021584|ref|ZP_03710776.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii ATCC 33806] gi|305681229|ref|ZP_07404036.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|224945575|gb|EEG26784.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii ATCC 33806] gi|305659434|gb|EFM48934.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 215 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 39/80 (48%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +VI +F +S++ LT RE C+ G ++ EIA L L TV +L SA Sbjct: 135 RVIAEFTRRKSIFTSSSEVLTPRELDCVAQLCQGMSNNEIATTLFLEPSTVKTHLSSAMA 194 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 K NR+Q + A R G + Sbjct: 195 KTGTHNRVQLVIWAFRNGVV 214 >gi|189460662|ref|ZP_03009447.1| hypothetical protein BACCOP_01304 [Bacteroides coprocola DSM 17136] gi|189432621|gb|EDV01606.1| hypothetical protein BACCOP_01304 [Bacteroides coprocola DSM 17136] Length = 250 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE L L G G +S+EIAE+L LS+HTV+ + + KL N QA A Sbjct: 190 LSRREKEILILIGRGKSSKEIAEELSLSIHTVSRHRQNILQKLQVSNSAQAFGIA 244 >gi|149201851|ref|ZP_01878825.1| nitrate/nitrite regulatory protein [Roseovarius sp. TM1035] gi|149144899|gb|EDM32928.1| nitrate/nitrite regulatory protein [Roseovarius sp. TM1035] Length = 213 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L DG T+ +I+ +LGLS +TV YL + KLD +R AIAK + Sbjct: 153 SLTRREHEILGLLVDGLTNFQISARLGLSENTVKYYLKAIYQKLDVNSRGGAIAKYVAGT 212 Query: 233 Y 233 Y Sbjct: 213 Y 213 >gi|139473330|ref|YP_001128045.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|134271576|emb|CAM29801.1| response regulator protein [Streptococcus pyogenes str. Manfredo] Length = 213 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 129 NGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS + N + +++ A + ++ + LT RE L L Sbjct: 101 KGYMLKTSSAAEILNAIRKVLKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 161 KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFR 204 >gi|56965096|ref|YP_176828.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56911340|dbj|BAD65867.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 201 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +RE L+ +G ++E IA + LS+ TV YL SA KL+ NR A+ A G+ Sbjct: 141 LNDREQEMLRRVRNGESTETIASAMHLSLGTVRNYLSSAMQKLETTNRHDALRIAEEKGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|254785114|ref|YP_003072542.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237684126|gb|ACR11390.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 220 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 33/51 (64%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L+L DG T+ +I+E L +S HTV ++L + K+ NR++A Sbjct: 158 LTKREKQILKLIKDGATNADISEALSVSEHTVKSHLYNVYKKIGVRNRLEA 208 >gi|229043280|ref|ZP_04191002.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676] gi|229078723|ref|ZP_04211277.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2] gi|228704596|gb|EEL57028.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2] gi|228726141|gb|EEL77376.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676] Length = 199 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 129 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 188 Query: 225 IAKAIR 230 + A R Sbjct: 189 VIYAFR 194 >gi|225871059|ref|YP_002747006.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|225700463|emb|CAW94880.1| response regulator protein [Streptococcus equi subsp. equi 4047] Length = 213 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS + N + A G A + ++ ++ + LT RE L L Sbjct: 101 KGYMLKTSSAAEILNAIRKVAKGELAIETEVDKKIKAHDQQPNLHEELTAREYDILHLLA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 GY ++ IA++L +S+ TV ++ + KL +R QA+ A R Sbjct: 161 KGYDNQTIADELFISLKTVKTHVSNILAKLQVDDRTQAVVYAFR 204 >gi|83716740|ref|YP_439002.1| LuxR family transcriptional regulator [Burkholderia thailandensis E264] gi|167577397|ref|ZP_02370271.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167615548|ref|ZP_02384183.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257142109|ref|ZP_05590371.1| LuxR family transcriptional regulator [Burkholderia thailandensis E264] gi|83650565|gb|ABC34629.1| transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 230 Score = 41.6 bits (96), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE CL G +S IA L +S +TV+ ++ +A KL+ +R A KA R G Sbjct: 167 HLTDREQMCLTWVARGKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQG 226 Query: 233 YI 234 I Sbjct: 227 LI 228 >gi|328754436|gb|EGF68052.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] Length = 218 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A Sbjct: 145 SKAEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALA 204 Query: 229 IRFGYI 234 G I Sbjct: 205 YESGLI 210 >gi|260175087|ref|ZP_05761499.1| LuxR family transcriptional regulator [Bacteroides sp. D2] gi|293371808|ref|ZP_06618218.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC 3f] gi|315923316|ref|ZP_07919556.1| transcriptional regulator [Bacteroides sp. D2] gi|292633260|gb|EFF51831.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CMC 3f] gi|313697191|gb|EFS34026.1| transcriptional regulator [Bacteroides sp. D2] Length = 257 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 31/51 (60%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 T RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI Sbjct: 197 TNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAI 247 >gi|52426340|ref|YP_089477.1| CitB protein [Mannheimia succiniciproducens MBEL55E] gi|52308392|gb|AAU38892.1| CitB protein [Mannheimia succiniciproducens MBEL55E] Length = 225 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K ++ + LT+RE +L G ++EI E+LGLS TV+A+ +A KLD N ++ Sbjct: 159 KNNNPIQQLTKRELEICELLIRGLGAKEIGEQLGLSFKTVHAHRANAMSKLDVKNNVE 216 >gi|33865919|ref|NP_897478.1| DNA-binding response regulator [Synechococcus sp. WH 8102] gi|33633089|emb|CAE07900.1| possible DNA-binding response regulator [Synechococcus sp. WH 8102] Length = 235 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE G S IA+ LG+S+ TV ++G+A KL A +R Q A+ +G Sbjct: 170 ELTQRELDVAAAVARGLKSNAIADLLGISLETVKTHVGNAMDKLGARDRTQMAVTALLYG 229 Query: 233 YI 234 I Sbjct: 230 LI 231 >gi|116749099|ref|YP_845786.1| two component LuxR family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116698163|gb|ABK17351.1| two component transcriptional regulator, LuxR family [Syntrophobacter fumaroxidans MPOB] Length = 218 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 13/117 (11%) Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACY-------QVITDFLELFK--KRSSAARNLTER 177 +GYV+ T LMLA E + G Y +VI +LE K K S++ LT+R Sbjct: 102 DGYVLKDATHSELMLAIECVFS--GKSYLSPSISEKVIEGYLEGRKTIKSSTSWDTLTQR 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L++ +GY +++IA+ L +S TV + + KLD + A A+ G I Sbjct: 160 EKEILKMIAEGYKNKDIADYLCISAKTVEKHRANLMKKLDLHSASSLTAFAMEKGLI 216 >gi|313764565|gb|EFS35929.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313807407|gb|EFS45894.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313816106|gb|EFS53820.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818453|gb|EFS56167.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313820216|gb|EFS57930.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313822975|gb|EFS60689.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313827995|gb|EFS65709.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|314915562|gb|EFS79393.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918484|gb|EFS82315.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314919972|gb|EFS83803.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314925444|gb|EFS89275.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314931985|gb|EFS95816.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314955854|gb|EFT00254.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314958335|gb|EFT02438.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314960110|gb|EFT04212.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314978316|gb|EFT22410.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314987819|gb|EFT31910.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314990039|gb|EFT34130.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315084426|gb|EFT56402.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315085766|gb|EFT57742.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315088816|gb|EFT60792.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315098426|gb|EFT70402.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101218|gb|EFT73194.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315108440|gb|EFT80416.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327332048|gb|EGE73785.1| two-component system response regulator [Propionibacterium acnes HL096PA3] gi|327453760|gb|EGF00415.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328753578|gb|EGF67194.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] Length = 218 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A Sbjct: 145 SKAEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALA 204 Query: 229 IRFGYI 234 G I Sbjct: 205 YESGLI 210 >gi|309792094|ref|ZP_07686568.1| two-component system response regulator [Oscillochloris trichoides DG6] gi|308225901|gb|EFO79655.1| two-component system response regulator [Oscillochloris trichoides DG6] Length = 215 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L +++E+AE + ++ TV +++ S KL NR+QA+ A+R G I Sbjct: 153 TPRELDVLRLMATSRSNKEMAEAMTVTEETVRSHIKSILNKLRQPNRMQAVLMALRLGII 212 >gi|239929935|ref|ZP_04686888.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291438269|ref|ZP_06577659.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291341164|gb|EFE68120.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 4/90 (4%) Query: 149 AHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 A G ++I +F L + + + +LTERET L L G ++ EIA +L ++ T Sbjct: 126 APGITRRLIAEFSRLAPEPRTPLKERVGDLTERETEVLALIARGLSNAEIAVRLVVAEQT 185 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++G VKL +R QA A G + Sbjct: 186 VKTHVGRILVKLGLRDRTQAAVFAYESGLV 215 >gi|254510855|ref|ZP_05122922.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacteraceae bacterium KLH11] gi|221534566|gb|EEE37554.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacteraceae bacterium KLH11] Length = 250 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 32/57 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT+R+ LQ GDG T+++IA +GL+ TV +L A L QA+ KA Sbjct: 183 RALTKRQREALQWVGDGKTTQDIALLMGLTAATVEKHLRLAREALSVETTAQAVLKA 239 >gi|332525929|ref|ZP_08402070.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332109480|gb|EGJ10403.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 242 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 4/88 (4%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + A +V+ L+ KR LT RE LQ +G ++ I + L +S HTV Sbjct: 159 VHAQETAARVMMPKLDSLPKRP----KLTPREREVLQWTREGKSAWAIGQILSMSEHTVV 214 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +A KL+ ++ A+ KA+ G + Sbjct: 215 FHLRNAMTKLEVSSKHSAVLKAMEIGLL 242 >gi|327443251|gb|EGE89905.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] Length = 218 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A Sbjct: 145 SKAEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALA 204 Query: 229 IRFGYI 234 G I Sbjct: 205 YESGLI 210 >gi|315080757|gb|EFT52733.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] Length = 228 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A Sbjct: 145 SKAEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALA 204 Query: 229 IRFGYI 234 G I Sbjct: 205 YESGLI 210 >gi|167589242|ref|ZP_02381630.1| transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 56 Score = 41.2 bits (95), Expect = 0.10, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ A +G T+ EI LGL+ T+N ++ + KLDA N+ A+ KA+ G I Sbjct: 1 MRWAAEGKTAYEIGIILGLTERTINFHISRSIAKLDASNKTNAVVKAVLMGLI 53 >gi|163851095|ref|YP_001639138.1| response regulator receiver [Methylobacterium extorquens PA1] gi|240138277|ref|YP_002962749.1| two-component transcriptional regulator, LuxR family [Methylobacterium extorquens AM1] gi|254560788|ref|YP_003067883.1| two-component LuxR family transcriptional regulator [Methylobacterium extorquens DM4] gi|163662700|gb|ABY30067.1| response regulator receiver [Methylobacterium extorquens PA1] gi|240008246|gb|ACS39472.1| two-component transcriptional regulator, LuxR family [Methylobacterium extorquens AM1] gi|254268066|emb|CAX23938.1| two-component transcriptional regulator, LuxR family [Methylobacterium extorquens DM4] Length = 222 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSS-----AARNLTERETSC 181 GYV+ S F +A+ V G Y + + ++ SS A L+ERE Sbjct: 103 RGYVLKRSAFQNIASAVRAVHAGGIYLDPALPERTAPHRRLSSSVDEAACSTLSERERDI 162 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G+TS+E+A++LG + + A KL +R Q + AI G++ Sbjct: 163 LRFVAFGFTSKEVADRLGATPKAIETQKARACTKLGLASRAQIVQFAILQGWL 215 >gi|239930359|ref|ZP_04687312.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438712|ref|ZP_06578102.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341607|gb|EFE68563.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 223 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L + G G+T+ EIA + L+ TV ++G K + +RIQA+ Sbjct: 160 LTEREREILTVIGKGWTNTEIATRFHLAESTVKTHVGRILAKTGSRDRIQAV 211 >gi|291302711|ref|YP_003513989.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571931|gb|ADD44896.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 219 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query: 167 RSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 R++ AR LT+RE L L G G ++ EIA++L + TV AY+ + +L+ NR+ Sbjct: 143 RAATARTKIDKLTDREREVLALVGAGCSNAEIAKRLHVVEGTVKAYVSAILTRLEVRNRV 202 Query: 223 QAIAKAIRFGYIC 235 QA A G + Sbjct: 203 QAAIIAYEAGLVT 215 >gi|212640294|ref|YP_002316814.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212561774|gb|ACJ34829.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 199 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT E LQ+ D TS +I+E+L +S T+ +L S KL ++R A+A+A Sbjct: 133 STKHGLTNIEIDILQMLADDQTSVQISERLKISKRTMERHLSSIFEKLGVLSRTGAVAEA 192 Query: 229 IRFGYI 234 +R I Sbjct: 193 LRLQLI 198 >gi|161520265|ref|YP_001583692.1| two component LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353558|ref|YP_001949185.1| two-component system nitrate/nitrite response regulator [Burkholderia multivorans ATCC 17616] gi|160344315|gb|ABX17400.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189337580|dbj|BAG46649.1| two-component system nitrate/nitrite response regulator [Burkholderia multivorans ATCC 17616] Length = 209 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 37/68 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R +A LT R+ L+ +G ++ IA++LGLS TV A++ + L +NR QA A Sbjct: 142 RHAAGAPLTPRQIEVLRYLAEGVPNKVIADRLGLSEKTVKAHITAIFRTLHVLNRTQAAA 201 Query: 227 KAIRFGYI 234 + G I Sbjct: 202 AGRKAGLI 209 >gi|108805868|ref|YP_645805.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108767111|gb|ABG05993.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 226 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ LQL G T EI+++L LS TV ++G+ LDA ++++A+A+A G Sbjct: 163 TLTPRQLDVLQLISRGKTVREISQELYLSEATVRNHVGAVLRALDAHSQLEAVARARELG 222 Query: 233 YI 234 + Sbjct: 223 LL 224 >gi|21219768|ref|NP_625547.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289773037|ref|ZP_06532415.1| two-component system response regulator [Streptomyces lividans TK24] gi|9368908|emb|CAB99140.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289703236|gb|EFD70665.1| two-component system response regulator [Streptomyces lividans TK24] Length = 220 Score = 41.2 bits (95), Expect = 0.10, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+L G ++ EIA +L + TV +++ + KL A +R QA+ A G++ Sbjct: 158 TEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESGFV 217 Query: 235 C 235 Sbjct: 218 A 218 >gi|312864942|ref|ZP_07725172.1| response regulator receiver domain protein [Streptococcus downei F0415] gi|311099562|gb|EFQ57776.1| response regulator receiver domain protein [Streptococcus downei F0415] Length = 213 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 2/107 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY++ TS + N + A G A + ++ + +LT RE L L Sbjct: 102 GYMLKTSSAAEILNSIRKVAQGQVAIETEVDQKIKYHDQHPDLHDDLTARERDVLALLAK 161 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 162 GYDNQTIADELFISLKTVKTHVSNILAKLNVEDRTQAVVYAFQHNLV 208 >gi|299147639|ref|ZP_07040703.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_23] gi|298514426|gb|EFI38311.1| transcriptional regulator, LuxR family [Bacteroides sp. 3_1_23] Length = 257 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 31/51 (60%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 T RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI Sbjct: 197 TNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAI 247 >gi|297162410|gb|ADI12122.1| transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 166 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L+L +GY + +IA KL S T+ L + +L+ NR A+A A+R G Sbjct: 105 GLAAREIEVLRLVAEGYDTADIAMKLSYSERTIKNVLHAVMTRLNLRNRSHAVAYALRQG 164 Query: 233 YI 234 I Sbjct: 165 LI 166 >gi|269959807|ref|ZP_06174185.1| nitrate/nitrite response regulator NarP [Vibrio harveyi 1DA3] gi|269835420|gb|EEZ89501.1| nitrate/nitrite response regulator NarP [Vibrio harveyi 1DA3] Length = 204 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 7/123 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAAR 172 A I VR G +GY++ +E L E++ +AH A Q + +L + + Sbjct: 84 ADIEAIVRSG--ADGYLLKDTEPDELV-ELLKQAHEGDKAYSQAVAKYLNEREGQEDVFD 140 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-RF 231 LT+RET LQ G+ +++IA++L +S TV ++ S KL +R A + RF Sbjct: 141 TLTDRETQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKKLKVPSRTAATVLYLERF 200 Query: 232 GYI 234 G I Sbjct: 201 GEI 203 >gi|290960425|ref|YP_003491607.1| LuxR family transcriptional regulator [Streptomyces scabiei 87.22] gi|260649951|emb|CBG73067.1| putative LuxR family regulator [Streptomyces scabiei 87.22] Length = 224 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RET L L +G T E +L ++ HTV YLG +L A N + A A A G+ Sbjct: 62 LSQRETDVLTLIANGETYETAGAQLEVTAHTVRQYLGRIYGRLGARNAVHAAAIATHQGW 121 Query: 234 I 234 + Sbjct: 122 L 122 >gi|260222153|emb|CBA31434.1| hypothetical protein Csp_F37510 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 222 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 51/113 (45%), Gaps = 10/113 (8%) Query: 124 LGFHKNGYVI---FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTER 177 L GYV +SE L+ V A G Y + D LF S + LT Sbjct: 103 LALGATGYVPKNESSSELLLAIRRV---AQGRRY-ISNDIASLFVDDSVTEATEIKLTNS 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ET+ LQL G+G TS EIA KL +S TV + + KL N + A AIR Sbjct: 159 ETTILQLVGEGLTSREIALKLNISEGTVRKHRENLRSKLGIRNSAEMAAYAIR 211 >gi|294056650|ref|YP_003550308.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293615983|gb|ADE56138.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 208 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ RE L L G +++++A+KL +S+ TV ++ + KL +R Q + AIR Sbjct: 143 QDLSARELQVLHLVAAGSSNKDVADKLSISLPTVKMHMTNIMKKLSVYDRTQLVIAAIRK 202 Query: 232 GYI 234 G + Sbjct: 203 GIV 205 >gi|256789144|ref|ZP_05527575.1| two-component system response regulator [Streptomyces lividans TK24] Length = 216 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+L G ++ EIA +L + TV +++ + KL A +R QA+ A G++ Sbjct: 154 TEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESGFV 213 Query: 235 C 235 Sbjct: 214 A 214 >gi|218529947|ref|YP_002420763.1| LuxR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218522250|gb|ACK82835.1| two component transcriptional regulator, LuxR family [Methylobacterium chloromethanicum CM4] Length = 222 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 7/113 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSS-----AARNLTERETSC 181 GYV+ S F +A+ V G Y + + ++ SS A L+ERE Sbjct: 103 RGYVLKRSAFQNIASAVRAVHAGGIYLDPALPERTAPHRRLSSSVDEAACSTLSERERDI 162 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G+TS+E+A++LG + + A KL +R Q + AI G++ Sbjct: 163 LRFVAFGFTSKEVADRLGATPKAIETQKARACTKLGLASRAQIVQFAILQGWL 215 >gi|148912803|ref|YP_001293382.1| Conserved hypothetical protein; putative transcriptional regulator, LuxR family [Pseudomonas phage F10] Length = 127 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 41/88 (46%), Gaps = 14/88 (15%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 I AHG T FL + L+ RE C+ G TS+E+A LG+ TV Sbjct: 6 ITAHG-----FTGFL---------GKGLSLRELQCVLGIAAGRTSKELARDLGMQPGTVG 51 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +AT KL R +A+A+R G I Sbjct: 52 KRVLAATTKLGVTRRAALVAEAMRRGLI 79 >gi|38230162|gb|AAR14178.1| AHL receptor-like protein [Aeromonas veronii] Length = 75 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 22/40 (55%), Positives = 26/40 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 LTERET CL A +G TS EIA LG++ TVN +L T Sbjct: 33 LTERETECLFWASEGKTSGEIACILGITERTVNYHLNPVT 72 >gi|99081053|ref|YP_613207.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040] gi|99037333|gb|ABF63945.1| transcriptional regulator, LuxR family [Ruegeria sp. TM1040] Length = 251 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT+R+ LQ GDG T+++IA +GL+ T+ +L A L QA+ KA Sbjct: 184 RGLTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARATLSVETTAQAVLKA 240 >gi|307946995|ref|ZP_07662330.1| putative transcriptional regulatory protein SgaR [Roseibium sp. TrichSKD4] gi|307770659|gb|EFO29885.1| putative transcriptional regulatory protein SgaR [Roseibium sp. TrichSKD4] Length = 216 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 42/75 (56%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A Q++ FL++ + S LT+RE + L+ G ++ ++A + G+S +TV +L + Sbjct: 127 AAGQMVFPFLDVRELHSDPIHLLTKREKALLEALSKGLSNRQLASEFGISANTVKFHLSN 186 Query: 212 ATVKLDAVNRIQAIA 226 KL +R QA+A Sbjct: 187 LYEKLSVTSRTQAVA 201 >gi|255308234|ref|ZP_05352405.1| salavaricin two-component response regulator [Clostridium difficile ATCC 43255] Length = 200 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT E LQL G + IA++L +S T++ +L KLD + ++AI KAI+ Sbjct: 134 EDLTSMEKRILQLICSGKKRKIIADELYISERTLSNHLQHIYDKLDVSSSVEAITKAIQM 193 Query: 232 GYI 234 GYI Sbjct: 194 GYI 196 >gi|197105485|ref|YP_002130862.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] gi|196478905|gb|ACG78433.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] Length = 255 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+ A G T EI + +S TV ++ +A+ KL R QA+ +A G Sbjct: 184 HLTRREIQVLKWAAAGKTDAEIGRIVSISTPTVRFHITNASRKLGVAGRAQAVHRAATLG 243 Query: 233 YI 234 Y+ Sbjct: 244 YL 245 >gi|271969982|ref|YP_003344178.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513157|gb|ACZ91435.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 215 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A+ LT RET +Q G T++EIA++L +S+ TV Y+ KL +R++ +A A Sbjct: 149 AQPLTARETEIVQAIARGRTNQEIADELFISLSTVKGYVSGIMAKLGVRSRVKIVAWA 206 >gi|134103488|ref|YP_001109149.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005968|ref|ZP_06563941.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916111|emb|CAM06224.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 217 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 11/117 (9%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN----LTER 177 +G+++ T + L V A G Y +VI D R AARN L+ER Sbjct: 97 SGFLLKTGDPRELVLGVRAAADGGAYLSPPVARRVIRDLGGPRLSREVAARNRIEGLSER 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L L G G ++ EIA ++ + TV AY+ + L NR+QA A G + Sbjct: 157 ERQVLALVGAGLSNAEIARRVHVVEGTVKAYVSAILNHLGFRNRVQAAILAYEAGLV 213 >gi|50956580|gb|AAT90827.1| acylhomoserine lactone dependent transcriptional activator [uncultured proteobacterium QS1] Length = 223 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQ G G E+A +S HTV ++ + KL+ +N QA+ +AIR G Sbjct: 163 LSAREIEILQWVGKGKAYFEVAIICAISEHTVKFHISKISTKLNVLNAKQAVYEAIRRGI 222 Query: 234 I 234 I Sbjct: 223 I 223 >gi|322386825|ref|ZP_08060449.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321269107|gb|EFX52043.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 199 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ +E L+ A G +++EIAEKL LS T+ Y+ + KL A NR +A+ A G+ Sbjct: 139 LSHQELLVLEAAATGLSNKEIAEKLYLSNGTIRNYMSTILTKLAADNRTEAVRIAQEQGW 198 Query: 234 I 234 I Sbjct: 199 I 199 >gi|317124103|ref|YP_004098215.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588191|gb|ADU47488.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 238 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 3/72 (4%) Query: 166 KRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +R AAR LTERE L G ++ E+A +L +S TV +LGSA KL NR Sbjct: 167 QRLDAARLVGTLTERERDVLAGLARGLSNAELARELFVSETTVKTHLGSAFAKLGVDNRA 226 Query: 223 QAIAKAIRFGYI 234 QA A R G + Sbjct: 227 QAAVLADRAGLL 238 >gi|167623909|ref|YP_001674203.1| two component LuxR family transcriptional regulator [Shewanella halifaxensis HAW-EB4] gi|167353931|gb|ABZ76544.1| two component transcriptional regulator, LuxR family [Shewanella halifaxensis HAW-EB4] Length = 222 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT R+ LQL +GY++ EIAE++ +S+ TV + +L+ + + AIR Sbjct: 154 LTSRQRQILQLIAEGYSTREIAERMSVSIKTVETHRAHIMSRLNIFDIAGLVRFAIRCKL 213 Query: 234 IC 235 IC Sbjct: 214 IC 215 >gi|331005380|ref|ZP_08328764.1| Transcriptional activator protein vanR [gamma proteobacterium IMCC1989] gi|330420834|gb|EGG95116.1| Transcriptional activator protein vanR [gamma proteobacterium IMCC1989] Length = 271 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%) Query: 153 CYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +Q T FL L K + LT++E L+ G + EI +K+ +S HTV+ Y+ S Sbjct: 187 AHQFNTCFLSLTKHELIQKKIPLTQKEEEILKWISKGLSKPEIGDKMNISSHTVSYYMRS 246 Query: 212 ATVKLDAVNRIQAIAKAIR 230 K+ N + + KAI+ Sbjct: 247 IFKKMGTNNTVSTVIKAIK 265 >gi|316931973|ref|YP_004106955.1| autoinducer-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599687|gb|ADU42222.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 242 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 14/140 (10%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 S ++ +++ + Q +RL G P+ G V F E + ++ Sbjct: 98 SPAQKRLLDEASQYGIRL--------GFTVPIHDGHGPVAAVTFAGNQREAQFERFVTSN 149 Query: 151 GACYQVITDFLELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 Q++ F +R A+ L+ RE CL+ A G ++ +I LG+S HT Sbjct: 150 PRMLQLMAMFFHSHVRRKLASDLRVDGAALSAREFECLEWAARGKSAWDIGRILGISHHT 209 Query: 205 VNAYLGSATVKLDAVNRIQA 224 +YL +A KL +QA Sbjct: 210 AISYLNNAKAKLGVRTVVQA 229 >gi|311741323|ref|ZP_07715147.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311303493|gb|EFQ79572.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 217 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + S L+ERE QL G ++ EIAE+L +S+ TV ++ K+D NR+ IA Sbjct: 153 QPSGLAELSERENEIAQLVAQGLSNAEIAEQLFISLTTVKTHMKHILAKIDGTNRVH-IA 211 Query: 227 KAIRFG 232 A+ G Sbjct: 212 IAVLGG 217 >gi|225351362|ref|ZP_03742385.1| hypothetical protein BIFPSEUDO_02956 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157706|gb|EEG70989.1| hypothetical protein BIFPSEUDO_02956 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 220 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 NLTERE +QL +GY + EIA KL LS TV + K + NR + Sbjct: 161 NLTERERDVMQLVAEGYDNREIAAKLFLSEGTVRNRISDILAKTNVTNRTK 211 >gi|221633170|ref|YP_002522395.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum DSM 5159] gi|221156902|gb|ACM06029.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum DSM 5159] Length = 261 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G +++EIAE L ++ TV ++ S KL A +R+ I A+R G+ Sbjct: 190 LTVRELQVLDCVAQGMSNKEIAEALFITEQTVKNHMTSILRKLGAQDRVDVILAAVRQGW 249 Query: 234 IC 235 + Sbjct: 250 VA 251 >gi|218658799|ref|ZP_03514729.1| conjugal transfer transcriptional regulator protein [Rhizobium etli IE4771] Length = 108 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA--VNRIQAIAK 227 R L+ RE +CL A G T+ E A G++ TV YL A K DA V ++ AIAK Sbjct: 46 RTLSPREMTCLLWATKGKTAPETAMLTGINARTVQHYLDKAREKFDAQSVPQLVAIAK 103 >gi|120401374|ref|YP_951203.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] gi|119954192|gb|ABM11197.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] Length = 392 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G +++EIA++L ++ TV +++ K AVNR QAIA A+ G Sbjct: 333 TLTEREADVFDLMVTGASNQEIADRLVITEGTVKSHVKHILRKYGAVNRAQAIAWALNGG 392 >gi|57866798|ref|YP_188469.1| LuxR family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|57637456|gb|AAW54244.1| DNA-binding response regulator, LuxR family [Staphylococcus epidermidis RP62A] Length = 200 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S+EIA KL LS TV Y + K+++ +R +A KA G+ Sbjct: 140 LTHKEQVVLREIGNGLSSKEIASKLYLSNGTVRNYTSTIIDKMNSDHRFEAWKKANEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|291440146|ref|ZP_06579536.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343041|gb|EFE69997.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 201 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 37/64 (57%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + A Sbjct: 134 SKAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYA 193 Query: 229 IRFG 232 I G Sbjct: 194 IERG 197 >gi|238062472|ref|ZP_04607181.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237884283|gb|EEP73111.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 226 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 35/66 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + LTERE L L DG ++ EI ++ LS TV ++ + KL NR++A A Sbjct: 155 AVQRLTEREREVLTLLADGLSNSEIGGRMFLSAGTVKDHVSAILTKLGVDNRVRAALLAE 214 Query: 230 RFGYIC 235 R G + Sbjct: 215 RAGLLS 220 >gi|297561144|ref|YP_003680118.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845592|gb|ADH67612.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 218 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE+ L L G T+ EIA++L L TV ++ KL +R QA+ A G Sbjct: 151 TLTQRESQTLTLMAQGLTNAEIADRLFLGTETVKTHVSHILTKLGVRDRTQAVIAAYDSG 210 Query: 233 YI 234 I Sbjct: 211 LI 212 >gi|222153503|ref|YP_002562680.1| response regulator protein [Streptococcus uberis 0140J] gi|222114316|emb|CAR42990.1| response regulator protein [Streptococcus uberis 0140J] Length = 213 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 2/104 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS + N + A G A + ++ ++ + LT RE L L Sbjct: 101 KGYMLKTSSAAEILNAIQKVAKGQLAIETEVDKKIKAHDRKPNLHDELTAREYDILYLLA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 161 KGYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFR 204 >gi|167840217|ref|ZP_02466901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia thailandensis MSMB43] Length = 230 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE CL G +S IA L +S +TV+ ++ +A KL+ +R A KA R G Sbjct: 167 HLTDREQMCLTWVARGKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQG 226 Query: 233 YI 234 I Sbjct: 227 LI 228 >gi|29654353|ref|NP_820045.1| LuxR family DNA-binding response regulator [Coxiella burnetii RSA 493] gi|161830925|ref|YP_001596685.1| LuxR family transcriptional regulator [Coxiella burnetii RSA 331] gi|29541620|gb|AAO90559.1| response regulator [Coxiella burnetii RSA 493] gi|161762792|gb|ABX78434.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 331] Length = 214 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 11/132 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFK 165 +EG LLP + VR G++ +S+ L + G Y I + L L K Sbjct: 84 MEGDLLPMRLLEVGVR------GFITKSSDTTELEQAIRAVYKGQRYISSAIANRLALSK 137 Query: 166 KRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++A + L++RE L L G +E IA++L ++ TVN++ KL N + Sbjct: 138 TTTAATCPFKKLSDREMEVLLLLAKGKKAEAIAKQLHITGKTVNSHRYRIFEKLGVKNDV 197 Query: 223 QAIAKAIRFGYI 234 + I A+++G + Sbjct: 198 ELIKLAVQYGLV 209 >gi|328883545|emb|CCA56784.1| two component transcriptional regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 210 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 35/60 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE +++ G T ++IA +LG+S HTV+ Y+ KL N+ + + A+ +G+ Sbjct: 150 LSVRERQVIRMLTHGLTHDQIARRLGISRHTVDTYVKRMRSKLGLGNKAELVRAAMAYGW 209 >gi|325001678|ref|ZP_08122790.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1] Length = 128 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G + IA +L LSVHTV ++ + KLDA ++++A+ A R G Sbjct: 54 HLTPRERDVLGSLARGRDATRIAHELALSVHTVRDHVRALLGKLDARSQLEAVVTAERLG 113 Query: 233 YIC 235 + Sbjct: 114 LVA 116 >gi|318040647|ref|ZP_07972603.1| two component LuxR family transcriptional regulator [Synechococcus sp. CB0101] Length = 248 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%) Query: 165 KKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 KK+S+A ++ T RE S LQL +G ++EIA +L S+ V Y+ K +R + Sbjct: 177 KKQSAAVKHEFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFTKTGTASRTE 236 Query: 224 AIAKAIRFGYI 234 + A+ G + Sbjct: 237 LVRYALEHGLV 247 >gi|311896181|dbj|BAJ28589.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 222 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L L G G+++EEIA +L +S+ T ++G KL A +R Q + A G + Sbjct: 158 TEREREVLALVGLGFSNEEIAAELHVSLSTAKTHIGRLLQKLAARDRAQLVIAAYESGLV 217 >gi|307325089|ref|ZP_07604293.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889235|gb|EFN20217.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 222 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 32/53 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +LTERE L G G+T+ EIA + ++ TV ++G K+ A +RIQA+ Sbjct: 156 SLTEREREILVAIGKGWTNGEIAARFVVAESTVKTHVGRVLAKIGARDRIQAV 208 >gi|298247093|ref|ZP_06970898.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549752|gb|EFH83618.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 202 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +RE L+L +G +++EIA+ L ++ T+ YL KL+A +R QAI A + G+ Sbjct: 141 LNKRELEVLRLLAEGRSNQEIADTLIVAKSTIKWYLKQIYSKLNAHSRTQAIVCARQIGF 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|296388063|ref|ZP_06877538.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 827 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L L G +++EI E+L +S+HTV + KL R QA+A+A G Sbjct: 766 LSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGL 825 Query: 234 I 234 + Sbjct: 826 L 826 >gi|295134645|ref|YP_003585321.1| two-component system response regulator [Zunongwangia profunda SM-A87] gi|294982660|gb|ADF53125.1| two-component system response regulator [Zunongwangia profunda SM-A87] Length = 208 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 A + +IE G C++ + ++ K++SA +ERE LQ T +EIA K+ LS Sbjct: 117 ALDSVIET-GYCFE--KELIQELGKKTSAKEQFSEREIEFLQYVCTEMTYKEIAAKMSLS 173 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T++ Y + KL +R+ AI+ Y Sbjct: 174 PKTIDGYRENLFTKLQIRSRVGLAVYAIKNNY 205 >gi|199597520|ref|ZP_03210949.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|199591543|gb|EDY99620.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] Length = 202 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL +A N LTERE + L G +S++IA L LS TV YL + KL N Sbjct: 128 ELVANMITAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHN 187 Query: 221 RIQAIAKAIRFGYIC 235 RI+AI A R ++ Sbjct: 188 RIEAIEMAKRNKWLA 202 >gi|150249482|gb|ABR67760.1| CmnR [Saccharothrix mutabilis subsp. capreolus] Length = 237 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L+ G G ++ EIA + +S TV +++ KL+ +R+QA A R G Sbjct: 160 SLTEREGQVLRAIGQGRSNREIAREFEVSETTVKSHVSRVLAKLELRDRVQAALLAWRLG 219 Query: 233 YIC 235 + Sbjct: 220 LVT 222 >gi|56696641|ref|YP_167002.1| LuxR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56678378|gb|AAV95044.1| transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 258 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L DG +E+IA + +S TV +L SA KL A R A+ +A++ G Sbjct: 190 LSRREREALHLLADGLRNEQIAAAMKISEVTVRMHLKSARDKLRAPTREAALVRAMQMGL 249 Query: 234 IC 235 + Sbjct: 250 LS 251 >gi|15598616|ref|NP_252110.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|9949559|gb|AAG06808.1|AE004763_3 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Length = 827 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L L G +++EI E+L +S+HTV + KL R QA+A+A G Sbjct: 766 LSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGL 825 Query: 234 I 234 + Sbjct: 826 L 826 >gi|113969495|ref|YP_733288.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-4] gi|113884179|gb|ABI38231.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-4] Length = 225 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 7/112 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCL 182 NG+++ L + I A G + + LE ++ S+ A++ L+ERE L Sbjct: 115 NGFLLKDVSLDKLLEAIEIVAQGG-HLIEPSVLEQMQQSSATAQSGPTHYLLSEREREIL 173 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++++EIA + L+ TV ++ + KLD +R QA+ K ++ I Sbjct: 174 GFMAGGFSNKEIANAVFLAEGTVKNHVSTILAKLDCRDRTQAVLKGLQLSLI 225 >gi|116051440|ref|YP_789727.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115586661|gb|ABJ12676.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 827 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L L G +++EI E+L +S+HTV + KL R QA+A+A G Sbjct: 766 LSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGL 825 Query: 234 I 234 + Sbjct: 826 L 826 >gi|328463247|gb|EGF34958.1| LuxR family two-component response regulator [Lactobacillus rhamnosus MTCC 5462] Length = 201 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL +A N LTERE + L G +S++IA L LS TV YL + KL N Sbjct: 128 ELVANMVTAESNPLTERELAVLGEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHN 187 Query: 221 RIQAIAKAIRFGYI 234 RI+AI A R ++ Sbjct: 188 RIEAIEMAKRNKWL 201 >gi|319400052|gb|EFV88292.1| response regulator [Staphylococcus epidermidis FRI909] Length = 200 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S+EIA KL LS TV Y + K+++ +R +A KA G+ Sbjct: 140 LTHKEQVVLREIGNGLSSKEIANKLYLSNGTVRNYTSTIIDKMNSDHRFEAWKKANEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|302540779|ref|ZP_07293121.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458397|gb|EFL21490.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 239 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 2/60 (3%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA--IAKAIR 230 L+ RE L+L GDG T+ +IAE+L L+ TV + S KL RIQA IA+ IR Sbjct: 174 RLSPREREILELIGDGLTNRQIAERLFLAEKTVKNRISSILSKLGVGRRIQAAVIAERIR 233 >gi|242242602|ref|ZP_04797047.1| response regulator [Staphylococcus epidermidis W23144] gi|242233950|gb|EES36262.1| response regulator [Staphylococcus epidermidis W23144] Length = 200 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S+EIA KL LS TV Y + K+++ +R +A KA G+ Sbjct: 140 LTHKEQVVLREIGNGLSSKEIANKLYLSNGTVRNYTSTIIDKMNSDHRFEAWKKANEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|218890380|ref|YP_002439244.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218770603|emb|CAW26368.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 827 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L L G +++EI E+L +S+HTV + KL R QA+A+A G Sbjct: 766 LSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGL 825 Query: 234 I 234 + Sbjct: 826 L 826 >gi|153004672|ref|YP_001378997.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028245|gb|ABS26013.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 218 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L +G +++E+AE LG+SV T ++ KL NR + + A++ G Sbjct: 154 LTDREKQVLKLVAEGRSNKEVAEVLGISVKTAMSHREHVMEKLQVHNRTELVRFALKKGV 213 Query: 234 I 234 I Sbjct: 214 I 214 >gi|54026217|ref|YP_120459.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54017725|dbj|BAD59095.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 230 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 36/70 (51%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R LT RE L+L G G + EIA +LG+S TV +++G KLD +R AI Sbjct: 155 RRDDRLAELTAREYEVLELIGRGRVNAEIATELGISEVTVKSHVGHIFGKLDLRDRAAAI 214 Query: 226 AKAIRFGYIC 235 A G + Sbjct: 215 VFAFDHGVVS 224 >gi|21225370|ref|NP_631149.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256783610|ref|ZP_05522041.1| two-component system response regulator [Streptomyces lividans TK24] gi|289767492|ref|ZP_06526870.1| two-component system response regulator [Streptomyces lividans TK24] gi|7688304|emb|CAB89760.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289697691|gb|EFD65120.1| two-component system response regulator [Streptomyces lividans TK24] Length = 225 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + LA G +++EIA+ L +S TV +++ A KL+A +R Q + A + G Sbjct: 159 LTEREREVMALAALGKSNQEIADHLVVSPLTVRSHVSRAMTKLNARDRAQLVVIAYQSGL 218 Query: 234 I 234 + Sbjct: 219 V 219 >gi|88798765|ref|ZP_01114348.1| two-component system regulatory protein [Reinekea sp. MED297] gi|88778528|gb|EAR09720.1| two-component system regulatory protein [Reinekea sp. MED297] Length = 224 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%) Query: 155 QVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +VI F EL K+ S LT+RE L+L GY+++EI+ + S T+ + Sbjct: 139 RVIKGFTELQKEGQSKVEKEPVQDPLTQREIEILRLMAGGYSNKEISRAIFKSEGTIKNH 198 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL +R +A+ KA+ G I Sbjct: 199 VSNILAKLGVRDRTRAVLKALELGVI 224 >gi|254242106|ref|ZP_04935428.1| hypothetical protein PA2G_02835 [Pseudomonas aeruginosa 2192] gi|126195484|gb|EAZ59547.1| hypothetical protein PA2G_02835 [Pseudomonas aeruginosa 2192] Length = 827 Score = 41.2 bits (95), Expect = 0.11, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L L G +++EI E+L +S+HTV + KL R QA+A+A G Sbjct: 766 LSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGL 825 Query: 234 I 234 + Sbjct: 826 L 826 >gi|312792317|ref|YP_004025240.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179457|gb|ADQ39627.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 215 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 19/115 (16%) Query: 124 LGFHKNGYVIFTSE--------FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-- 173 L F +GY++ +S+ + +L +V+ + A + I++ L+ K+ SS + N Sbjct: 95 LSFGADGYILKSSDAQHIIDTIYAVLDGKVVFDREIALF--ISNTLK--KEASSFSGNVN 150 Query: 174 -----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE ++L GY+++EIA L +S TV Y+ S KL NR Q Sbjct: 151 VLKNELTERELDIVKLIAQGYSNKEIANLLFISEGTVRNYISSILQKLQLQNRTQ 205 >gi|300787377|ref|YP_003767668.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796891|gb|ADJ47266.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 215 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 55/124 (44%), Gaps = 1/124 (0%) Query: 112 LLPFAGIAFPVR-LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 L +AG A VR LG GYV+ L V A G L + S Sbjct: 89 LTSYAGRADAVRALGAGARGYVLKAGPPEELFRAVRSAAAGGLGLAPEIVDGLVGQVVSP 148 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE ++L G ++ IAE L LS TV +L KL A NR A+++A+R Sbjct: 149 DPDLTTREIEVIRLLASGRSNRAIAEALFLSEATVKTHLVRIYRKLGADNRAAAVSEAVR 208 Query: 231 FGYI 234 G + Sbjct: 209 RGLL 212 >gi|254788088|ref|YP_003075517.1| response regulator receiver domain-containing protein [Teredinibacter turnerae T7901] gi|237687530|gb|ACR14794.1| response regulator receiver domain protein [Teredinibacter turnerae T7901] Length = 303 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 32/58 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE+ L G T+ EI + LG S T+N +L KL+ NR A AKA+++ Sbjct: 244 LTTRESEVLLWLARGKTNREIGQILGTSPRTINKHLEQIYKKLEVENRTTAAAKALQY 301 >gi|225570961|ref|ZP_03779984.1| hypothetical protein CLOHYLEM_07065 [Clostridium hylemonae DSM 15053] gi|225160423|gb|EEG73042.1| hypothetical protein CLOHYLEM_07065 [Clostridium hylemonae DSM 15053] Length = 851 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 7/94 (7%) Query: 143 NEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 +EV++ AH C++ I L+ S L++++T L L GY + EI++ GL Sbjct: 762 SEVLLAAHAMSKCHKGIAAQLD-----SRRPVKLSKQQTLMLSLLSQGYKNAEISDITGL 816 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ T+ ++ A KL N + A+ KA G+I Sbjct: 817 AIPTIKSHTSIAYHKLGVNNALDAVLKARELGFI 850 >gi|195978655|ref|YP_002123899.1| TCS response regulator YvqC-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975360|gb|ACG62886.1| TCS response regulator YvqC-like [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 197 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS + N + A G A + ++ ++ LT RE L L Sbjct: 85 KGYMLKTSSAAEILNAIRKVAKGELAIETEVDKKIKAHDQQPDLHEELTAREYDILHLLA 144 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 GY ++ IA++L +S+ TV ++ + KL +R QA+ A R Sbjct: 145 KGYDNQTIADELFISLKTVKTHVSNILAKLQVDDRTQAVVYAFR 188 >gi|160873996|ref|YP_001553312.1| LuxR family transcriptional regulator [Shewanella baltica OS195] gi|160859518|gb|ABX48052.1| transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|315266225|gb|ADT93078.1| transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 221 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 19/188 (10%) Query: 42 LDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS 101 LD RR + LD+ IP + + HF L + S+ +E+ + Sbjct: 41 LDKSRRSFYLITQKGAALDNKGIPLL-----ASRLVSHFPVALYQVERDSLDQESAM--- 92 Query: 102 GQLSVRLEGGLLPFAGIAFP-VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF 160 LL G+ F RL G +E L ++ + Q + Sbjct: 93 ----------LLGIRGLLFADQRLDLMLTGLRKMVAEELWYDRTLLSKVFRRVVQKLDGN 142 Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 E+ + + LT RE + +Q G ++EIA +L +S HTV A++ S K + N Sbjct: 143 NEMLSDTVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRN 202 Query: 221 RIQAIAKA 228 R++ + A Sbjct: 203 RVELLRWA 210 >gi|134291839|ref|YP_001115608.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135028|gb|ABO59353.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 239 Score = 41.2 bits (95), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 33/66 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A L+ RE L +G T+ E+A L L+ V ++ +A KLDA N+ A KA Sbjct: 170 SGAMRLSLREKEVLHWTAEGKTAAEVAAILQLTERNVGFHIQNAMDKLDATNKTHATVKA 229 Query: 229 IRFGYI 234 G I Sbjct: 230 AMLGLI 235 >gi|330987825|gb|EGH85928.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 126 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L ERE SCL G T +EIA+ GLS +V + S KL R +A+A R G Sbjct: 16 GLAERELSCLLAVAAGQTDKEIAKHDGLSPRSVKGRIESCMHKLGVYKRPALVAEAFRRG 75 Query: 233 YI 234 I Sbjct: 76 LI 77 >gi|325067026|ref|ZP_08125699.1| LuxR family two component transcriptional regulator [Actinomyces oris K20] Length = 203 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L A G + EIA +L L TV YL SA K A NR +A A G+ Sbjct: 143 LTEREKEVLLAAATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGW 202 Query: 234 I 234 + Sbjct: 203 L 203 >gi|320106955|ref|YP_004182545.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925476|gb|ADV82551.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 208 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 38/65 (58%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +A L+ERE L+ G +++ +A+KL +S TV ++ S KL A +R A+ A+ Sbjct: 142 SADALSEREIQVLREVSAGSSNKSVADKLFISEDTVKGHMKSILAKLQANDRTHAVMIAV 201 Query: 230 RFGYI 234 + G+I Sbjct: 202 KRGFI 206 >gi|295703554|ref|YP_003596629.1| two-component response regulator LiaR [Bacillus megaterium DSM 319] gi|294801213|gb|ADF38279.1| two-component response regulator LiaR [Bacillus megaterium DSM 319] Length = 208 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 40/76 (52%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V + +K S LT RE L L G T++EIA++L +++ TV ++ + Sbjct: 128 EVTGKMMSKMRKPSLPHEELTAREMEILLLMTQGKTNQEIADELFIALKTVKTHVSNLLS 187 Query: 215 KLDAVNRIQAIAKAIR 230 KLD +R QA+ A + Sbjct: 188 KLDVQDRTQAVIYAFK 203 >gi|229069092|ref|ZP_04202384.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185] gi|228714037|gb|EEL65920.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185] Length = 151 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK +LTERE L L +G +++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 81 KKEQPLHDDLTEREFEILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQA 140 Query: 225 IAKAIR 230 + A R Sbjct: 141 VIYAFR 146 >gi|213691136|ref|YP_002321722.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522597|gb|ACJ51344.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457193|dbj|BAJ67814.1| hypothetical protein BLIJ_0220 [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 222 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE + ++ G +++IAE+L LS +TV Y A KL A NR +A+ K R+ Sbjct: 160 RLSERERAVMRFFAKGMKADDIAERLDLSRNTVMTYSHRALRKLHAENREEAMEKCGRY 218 >gi|206975855|ref|ZP_03236766.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962901|ref|YP_002341479.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222098883|ref|YP_002532941.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229142155|ref|ZP_04270680.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST26] gi|206745949|gb|EDZ57345.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217063637|gb|ACJ77887.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221242942|gb|ACM15652.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228641444|gb|EEK97750.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST26] Length = 215 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGV 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|107102954|ref|ZP_01366872.1| hypothetical protein PaerPA_01004023 [Pseudomonas aeruginosa PACS2] Length = 827 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L L G +++EI E+L +S+HTV + KL R QA+A+A G Sbjct: 766 LSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGL 825 Query: 234 I 234 + Sbjct: 826 L 826 >gi|78062461|ref|YP_372369.1| two component LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77970346|gb|ABB11725.1| two component transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 215 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ +G ++ IA LG++ TV +LG+ KL +R QA+A A R G Sbjct: 151 LTARELEVLRCLAEGGSNARIAATLGITEKTVKTHLGNVMSKLHLSDRTQAVALAWREGL 210 Query: 234 IC 235 + Sbjct: 211 MA 212 >gi|27467920|ref|NP_764557.1| two-component response regulator [Staphylococcus epidermidis ATCC 12228] gi|251810754|ref|ZP_04825227.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282876246|ref|ZP_06285113.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366714|ref|ZP_06613390.1| response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315465|gb|AAO04599.1|AE016747_96 two-component response regulator [Staphylococcus epidermidis ATCC 12228] gi|251805914|gb|EES58571.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281295271|gb|EFA87798.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319015|gb|EFE59385.1| response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329728307|gb|EGG64745.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU144] gi|329736225|gb|EGG72497.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU028] gi|329736598|gb|EGG72864.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU045] Length = 200 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S+EIA KL LS TV Y + K+++ +R +A KA G+ Sbjct: 140 LTHKEQVVLREIGNGLSSKEIASKLYLSNGTVRNYTSTIIDKMNSDHRFEAWKKANEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|317476127|ref|ZP_07935379.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] gi|316907765|gb|EFV29467.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] Length = 255 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 34/58 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G S+EIA+ L +S++TVN++ + KL A N +AI A R Sbjct: 192 LTNRELEVLRLMKQGLLSKEIADTLQISINTVNSHRQNILQKLKANNSAEAINFAQRL 249 >gi|320106469|ref|YP_004182059.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924990|gb|ADV82065.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 210 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 53/107 (49%), Gaps = 6/107 (5%) Query: 130 GYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY+I + L+ A + H QVI++ L NL++RE LQL Sbjct: 106 GYLIKGMPHDALIRAMHRVHTGHRFLPQVISEAL----SSRVPGSNLSQREQEVLQLLFA 161 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIAE+L + TV ++ ++L+ +R QA+ + ++ G + Sbjct: 162 GKSNREIAEELQIKETTVKTHVSVILMRLNVEDRTQAVVEGLKRGLV 208 >gi|282861615|ref|ZP_06270679.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563431|gb|EFB68969.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 236 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G+ + EIA+K S TV L +L NR A+ A+R G Sbjct: 175 TLTTREADMLRLVAEGFDTAEIAQKTSYSERTVKNVLHEVATRLHLRNRAHAVGYALRNG 234 Query: 233 YI 234 I Sbjct: 235 LI 236 >gi|260220323|emb|CBA27745.1| hypothetical protein Csp_A03820 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 267 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 35/78 (44%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H A QVI + A LTERE L+ G T+ EI L +S TV ++ Sbjct: 182 HQAPGQVIAPVTYTNGNLPTEADVLTEREAEILKWVALGKTNPEIGSILEISAFTVKNHM 241 Query: 210 GSATVKLDAVNRIQAIAK 227 KLD NR QA+ K Sbjct: 242 QRVFKKLDVSNRAQAVGK 259 >gi|255323701|ref|ZP_05364829.1| transcriptional response regulator, receiver domain [Corynebacterium tuberculostearicum SK141] gi|255299191|gb|EET78480.1| transcriptional response regulator, receiver domain [Corynebacterium tuberculostearicum SK141] Length = 217 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + S L+ERE QL G ++ EIAE+L +S+ TV ++ K+D NR+ IA Sbjct: 153 QPSGLAELSERENEIAQLVAQGLSNAEIAEQLFISLTTVKTHMKHILAKIDGTNRVH-IA 211 Query: 227 KAIRFG 232 A+ G Sbjct: 212 IAVLGG 217 >gi|160934711|ref|ZP_02082097.1| hypothetical protein CLOLEP_03586 [Clostridium leptum DSM 753] gi|156866164|gb|EDO59536.1| hypothetical protein CLOLEP_03586 [Clostridium leptum DSM 753] Length = 212 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 155 QVITDFLELFK---KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 +++T EL + K AAR ++ RE + L G +++EIAE L LS TV YL + Sbjct: 128 EIVTKLPELMQSGDKFDFAARGVSPRELDVISLVAKGLSNKEIAEALFLSEGTVRNYLSA 187 Query: 212 ATVKLDAVNRIQ 223 KL+ +R Q Sbjct: 188 VLDKLELRDRTQ 199 >gi|149182102|ref|ZP_01860586.1| DegU [Bacillus sp. SG-1] gi|148850204|gb|EDL64370.1| DegU [Bacillus sp. SG-1] Length = 225 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R QA+ I+ G+ Sbjct: 162 LTRRECEVLQMLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVTGIKNGW 221 Query: 234 I 234 + Sbjct: 222 V 222 >gi|118593080|ref|ZP_01550467.1| transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] gi|118434387|gb|EAV41041.1| transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] Length = 233 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 31/56 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE CL L G + IA +LG+ TV +LG+A KL A R A+A A Sbjct: 174 SLTPRELECLSLIASGLRVKAIAAELGIQPVTVELHLGNARKKLGAATREHAVALA 229 >gi|152984927|ref|YP_001347090.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960085|gb|ABR82110.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 827 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L L G +++EI E+L +S+HTV + KL R QA+A+A G Sbjct: 766 LSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGL 825 Query: 234 I 234 + Sbjct: 826 L 826 >gi|53716260|ref|YP_106160.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|53722590|ref|YP_111575.1| N-acylhomoserine lactone-dependent regulatory protein [Burkholderia pseudomallei K96243] gi|67640560|ref|ZP_00439362.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei GB8 horse 4] gi|76818021|ref|YP_335776.1| LuxR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|124383134|ref|YP_001025820.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10229] gi|126442943|ref|YP_001063209.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 668] gi|126446904|ref|YP_001077903.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei NCTC 10247] gi|126457976|ref|YP_001076161.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106a] gi|134281979|ref|ZP_01768685.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 305] gi|167002385|ref|ZP_02268175.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei PRL-20] gi|167724282|ref|ZP_02407518.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei DM98] gi|167743255|ref|ZP_02416029.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 14] gi|167820433|ref|ZP_02452113.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 91] gi|167828803|ref|ZP_02460274.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 9] gi|167850259|ref|ZP_02475767.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei B7210] gi|167898862|ref|ZP_02486263.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 7894] gi|167907182|ref|ZP_02494387.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei NCTC 13177] gi|167915548|ref|ZP_02502639.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 112] gi|167923392|ref|ZP_02510483.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei BCC215] gi|217425142|ref|ZP_03456637.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 576] gi|226195987|ref|ZP_03791573.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pakistan 9] gi|237510506|ref|ZP_04523221.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242313819|ref|ZP_04812836.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106b] gi|254176584|ref|ZP_04883242.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei ATCC 10399] gi|254185131|ref|ZP_04891720.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1655] gi|254186897|ref|ZP_04893413.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pasteur 52237] gi|254194457|ref|ZP_04900889.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei S13] gi|254201028|ref|ZP_04907393.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei FMH] gi|254204993|ref|ZP_04911346.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei JHU] gi|254264301|ref|ZP_04955166.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1710a] gi|254301416|ref|ZP_04968860.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 406e] gi|254359112|ref|ZP_04975384.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei 2002721280] gi|52213004|emb|CAH39042.1| putative N-acylhomoserine lactone-dependent regulatory protein [Burkholderia pseudomallei K96243] gi|52422230|gb|AAU45800.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|76582494|gb|ABA51968.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] gi|126222434|gb|ABN85939.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 668] gi|126231744|gb|ABN95157.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106a] gi|126239758|gb|ABO02870.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei NCTC 10247] gi|134246508|gb|EBA46596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 305] gi|147748640|gb|EDK55715.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei FMH] gi|147754579|gb|EDK61643.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei JHU] gi|148028299|gb|EDK86259.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei 2002721280] gi|156105360|gb|ABU49179.1| BpsR3 [Burkholderia pseudomallei] gi|157810944|gb|EDO88114.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 406e] gi|157934581|gb|EDO90251.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pasteur 52237] gi|160697626|gb|EDP87596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei ATCC 10399] gi|169651208|gb|EDS83901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei S13] gi|184215723|gb|EDU12704.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1655] gi|217391747|gb|EEC31774.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 576] gi|225931880|gb|EEH27881.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pakistan 9] gi|235002711|gb|EEP52135.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238521303|gb|EEP84756.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei GB8 horse 4] gi|242137058|gb|EES23461.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106b] gi|243061949|gb|EES44135.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei PRL-20] gi|254215303|gb|EET04688.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1710a] gi|261827149|gb|ABM99449.2| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] Length = 230 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE CL G +S IA L +S +TV+ ++ +A KL+ +R A KA R G Sbjct: 167 HLTDREQMCLTWVARGKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQG 226 Query: 233 YI 234 I Sbjct: 227 LI 228 >gi|330468505|ref|YP_004406248.1| LuxR response regulator receiver [Verrucosispora maris AB-18-032] gi|328811476|gb|AEB45648.1| LuxR response regulator receiver [Verrucosispora maris AB-18-032] Length = 192 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ A +G +EIA +L L+ TV +L + K NR++A+ +A R G+ Sbjct: 132 LTRREAEVLRAAAEGLPLKEIARRLFLAHGTVRNHLSAVMRKTGTRNRMEAVWQARRHGW 191 Query: 234 I 234 I Sbjct: 192 I 192 >gi|312136161|ref|YP_004003499.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor owensensis OL] gi|311776212|gb|ADQ05699.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor owensensis OL] Length = 213 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 12/111 (10%) Query: 124 LGFHKNGYVIFTSE--------FLMLANEVIIEAHGACYQVITDFLELFKKRS---SAAR 172 L F +GY++ +S+ +L +V+I+ A + V + F+ S + + Sbjct: 95 LSFGADGYILKSSDAQHIIDTIHAVLDGKVVIDKETALF-VANSLKKDFQNHSINENKLK 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 NL+ERE +L GY++++I++ L +S TV Y+ S KL+ NR Q Sbjct: 154 NLSERELEIARLIAQGYSNKDISKILFISEGTVRNYISSILEKLELKNRTQ 204 >gi|189219460|ref|YP_001940101.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Methylacidiphilum infernorum V4] gi|161075723|gb|ABX56609.1| transcriptional regulator [Methylacidiphilum infernorum V4] gi|189186318|gb|ACD83503.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Methylacidiphilum infernorum V4] Length = 227 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++S L++RE QL G G +S +IA++L LS+ TV AY S KL + + + Sbjct: 155 KTSPLGKLSDRELEVFQLIGKGLSSRQIADQLHLSIKTVEAYRASIKQKLKLQSGTELVH 214 Query: 227 KAIRF 231 AI + Sbjct: 215 YAISW 219 >gi|172064983|ref|YP_001815695.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997225|gb|ACB68142.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 239 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 33/67 (49%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A L+ RE L +G T+ E+A L LS V ++ +A KLDA N+ A K Sbjct: 169 PSGAMRLSLREKQVLHWTAEGKTAAEVAVILQLSERNVGFHIQNAIDKLDAANKTHATVK 228 Query: 228 AIRFGYI 234 A G I Sbjct: 229 AAMLGLI 235 >gi|302519720|ref|ZP_07272062.1| LOW QUALITY PROTEIN: two component system response regulator [Streptomyces sp. SPB78] gi|302428615|gb|EFL00431.1| LOW QUALITY PROTEIN: two component system response regulator [Streptomyces sp. SPB78] Length = 140 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LTERET L L G ++ EIAE L L+ TV ++ KL +R QA+ A Sbjct: 73 KALTERETEVLTLVARGRSNTEIAESLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYES 132 Query: 232 GYIC 235 G + Sbjct: 133 GLVA 136 >gi|58583150|ref|YP_202166.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427744|gb|AAW76781.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 214 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 154 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQL 213 Query: 234 I 234 + Sbjct: 214 V 214 >gi|67922881|ref|ZP_00516379.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67855305|gb|EAM50566.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 221 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 7/91 (7%) Query: 151 GACY---QVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 GA Y Q+ L+ K +S L+ERE L+L +G ++ +IAE L LS + Sbjct: 131 GATYLDPQIARLVLDNLKPPTSEPNQNISLLSERELEVLKLIVEGKSNNQIAEDLYLSTN 190 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ ++ KL +R+QA A+R G + Sbjct: 191 TIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 221 >gi|325920818|ref|ZP_08182719.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325548715|gb|EGD19668.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 213 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQL 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|325914881|ref|ZP_08177216.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325538972|gb|EGD10633.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 213 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQL 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|297624881|ref|YP_003706315.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297166061|gb|ADI15772.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 227 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L+L G +++EIA LG+S TV L KL NR QA A+R G Sbjct: 160 ELTEREATILRLLAQGASNQEIAVSLGVSEKTVRNRLSEIFSKLRLNNRTQAALYALREG 219 >gi|254776539|ref|ZP_05218055.1| response regulator receiver domain-containing protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 167 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+ G ++++IAEKL LS TV ++ + KL NR++ AI G Sbjct: 103 RLTDRETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHG 162 >gi|218674106|ref|ZP_03523775.1| two component transcriptional regulator, LuxR family protein [Rhizobium etli GR56] Length = 305 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 30/56 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT+RE+ L G + +I E LGLS TVN +L VKL NR A KA Sbjct: 243 SLTQRESEVLLWIAKGKANRDIGEILGLSARTVNKHLEQIYVKLGVENRASAAVKA 298 >gi|321313453|ref|YP_004205740.1| two-component response regulator YxjM [Bacillus subtilis BSn5] gi|320019727|gb|ADV94713.1| two-component response regulator (YxjM) [Bacillus subtilis BSn5] Length = 218 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A T+RE LQ G +E+IAEKL +S TV ++ K +A +R QA+ AIR Sbjct: 154 AEPFTKRELEVLQQMAYGLRNEDIAEKLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIR 213 Query: 231 FGYI 234 G + Sbjct: 214 NGIV 217 >gi|319652028|ref|ZP_08006149.1| LuxR family Two component transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317396319|gb|EFV77036.1| LuxR family Two component transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 217 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 1/84 (1%) Query: 152 ACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A +++ +++ K+ ++ NL ++RE L L G+++++IAE+L +SV TV + G Sbjct: 130 ATKRLMEEYIGSVKQGNTDTFNLLSDREKEVLTLIAKGFSNKDIAEQLVISVKTVETHKG 189 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL R + +A A++ G + Sbjct: 190 NLMEKLQMKTRPELVAYALKKGLL 213 >gi|298248918|ref|ZP_06972722.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546922|gb|EFH80789.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 788 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+R+ L+L +G T +EIAE+L +S TVNA+L K+ R A A+ Sbjct: 727 QLTQRQVEILRLLAEGLTDKEIAERLCISPRTVNAHLNKIYPKIHVSTRSAATRYAV 783 >gi|225868023|ref|YP_002743971.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225701299|emb|CAW98303.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 213 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS + N + A G A + ++ ++ LT RE L L Sbjct: 101 KGYMLKTSSAAEILNAIRKVAKGELAIETEVDKKIKAHDQQPDLHEELTAREYDILHLLA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 GY ++ IA++L +S+ TV ++ + KL +R QA+ A R Sbjct: 161 KGYDNQTIADELFISLKTVKTHVSNILAKLQVDDRTQAVVYAFR 204 >gi|163760528|ref|ZP_02167609.1| hypothetical protein HPDFL43_11556 [Hoeflea phototrophica DFL-43] gi|162282143|gb|EDQ32433.1| hypothetical protein HPDFL43_11556 [Hoeflea phototrophica DFL-43] Length = 77 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T E CL+L G++ ++I L L+ V + L +KL A NR+ +AKA R G Sbjct: 1 MTRTEMKCLRLCAIGWSDQKIGLHLELTASEVASVLSVVMLKLRAPNRLAGLAKASRLGL 60 Query: 234 I 234 + Sbjct: 61 L 61 >gi|149914675|ref|ZP_01903205.1| nitrate/nitrite regulatory protein [Roseobacter sp. AzwK-3b] gi|149811468|gb|EDM71303.1| nitrate/nitrite regulatory protein [Roseobacter sp. AzwK-3b] Length = 224 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 5/88 (5%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 ++E H V +D L+ + S L+ RE L L DG T+ +I+ +LGLS +TV Sbjct: 142 LVEGHSI---VPSDILK--RLTSDNTDTLSRREHEILALLVDGLTNFQISARLGLSENTV 196 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 YL + KLD +R AIAK + Y Sbjct: 197 KYYLKAIYQKLDVNSRGAAIAKYVAGNY 224 >gi|42784585|ref|NP_981832.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42740517|gb|AAS44440.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 215 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGV 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|186687224|ref|YP_001870367.1| two component LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186469527|gb|ACC85326.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 217 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ E + L DG +++ IAE+L ++ TV ++ KLD +R+ A+ +A + G Sbjct: 148 HLSATEMQIISLMADGSSNKLIAERLFITESTVKGHINKIFAKLDVKDRVNALIEASKLG 207 Query: 233 YI 234 YI Sbjct: 208 YI 209 >gi|302550880|ref|ZP_07303222.1| two component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468498|gb|EFL31591.1| two component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 228 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G++++EIAE+L +S TV ++ A KL A +R Q + A G Sbjct: 162 SLTGREREVLVLVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESG 221 Query: 233 YI 234 + Sbjct: 222 LV 223 >gi|218232786|ref|YP_002370188.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218160743|gb|ACK60735.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 215 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|29834041|ref|NP_828675.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29611166|dbj|BAC75210.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 223 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 29/52 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE S L LA G + EIA L LS TV Y+ + T K A NRI AI Sbjct: 163 LTRRELSVLSLAAGGASVAEIAGSLHLSHGTVRNYMSAITRKTGARNRIDAI 214 >gi|228924157|ref|ZP_04087433.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835647|gb|EEM81012.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 214 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 154 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 213 Query: 234 I 234 + Sbjct: 214 V 214 >gi|296141417|ref|YP_003648660.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029551|gb|ADG80321.1| transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 286 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT RE L G T+ E+A++L + TV AYL SA KL R +++ +A Sbjct: 223 RPLTAREVDVLAQVALGCTNAEVAQRLSIGAETVKAYLRSAGQKLGTRTRFESVTRARSL 282 Query: 232 GYI 234 G + Sbjct: 283 GLL 285 >gi|94314741|ref|YP_587950.1| LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358593|gb|ABF12681.1| Transcriptional regulator, LuxR family, ATP-dependent [Cupriavidus metallidurans CH34] Length = 914 Score = 41.2 bits (95), Expect = 0.12, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 E+ K R +A A LT RE LQ+ G+ + IAEK+ +S T+ ++L KL A + Sbjct: 840 EVNKARGAAIAEPLTTREQEVLQMLAAGHRNRVIAEKMFVSELTIKSHLRKINAKLGAQS 899 Query: 221 RIQAIAKAIRFGYI 234 R +A+A G + Sbjct: 900 RTEAVAIGRSLGLL 913 >gi|186687174|ref|YP_001870317.1| two component LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186469477|gb|ACC85276.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 210 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L++RE L+L G G ++EIA++L LS TV Y+ KL+ +RIQA Sbjct: 151 LSKREIGVLKLVGQGRNNQEIAQELHLSEGTVKNYVTQILNKLEMRDRIQA 201 >gi|328555254|gb|AEB25746.1| two-component response regulator [Bacillus amyloliquefaciens TA208] Length = 229 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R QA+ AI+ G+ Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGW 225 >gi|328542321|ref|YP_004302430.1| N-acyl homoserine lactone transcriptional regulator, LuxR-like protein [polymorphum gilvum SL003B-26A1] gi|326412068|gb|ADZ69131.1| Putative N-acyl homoserine lactone transcriptional regulator, LuxR-like protein [Polymorphum gilvum SL003B-26A1] Length = 230 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 32/63 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE CL G ++ EI+ LG+S TV +L + K+ N A+ KAI G Sbjct: 167 SLTRRERECLLWIAAGKSAWEISRILGISARTVYFHLDNVRAKMGVTNVYHAVVKAIMEG 226 Query: 233 YIC 235 I Sbjct: 227 MIS 229 >gi|311070407|ref|YP_003975330.1| two-component response regulator YxjM [Bacillus atrophaeus 1942] gi|310870924|gb|ADP34399.1| two-component response regulator (YxjM) [Bacillus atrophaeus 1942] Length = 218 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A T+RE LQ G +EEIA+KL +S TV ++ K +A +R QA+ AIR Sbjct: 154 AEPFTKRELEVLQQMAYGLRNEEIADKLFVSESTVKTHVHRILQKCEAQDRTQAVVFAIR 213 Query: 231 FGYI 234 G + Sbjct: 214 NGIV 217 >gi|307326279|ref|ZP_07605475.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887942|gb|EFN18932.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 224 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ RE ++L G T++EI ++L LS+ TV YLG K+ A NR++ A A Sbjct: 157 AVGLSARELDIVRLIAVGRTNQEICDELFLSLSTVKTYLGRVQSKIAARNRVEIAAWAWE 216 Query: 231 FGYI 234 G + Sbjct: 217 HGAV 220 >gi|302344447|ref|YP_003808976.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301641060|gb|ADK86382.1| transcriptional regulator, LuxR family [Desulfarculus baarsii DSM 2075] Length = 221 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L G T+ EIA L +S HTV ++G+ KL +R A A R G Sbjct: 161 LSGREMEVLRLVASGMTNNEIARALCISPHTVKTHVGNIFNKLGVNDRAMAAVTAARMG 219 >gi|228911248|ref|ZP_04075053.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 200] gi|228848424|gb|EEM93273.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 200] Length = 215 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|229105997|ref|ZP_04236618.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-28] gi|228677392|gb|EEL31648.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-28] Length = 215 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|218515979|ref|ZP_03512819.1| probable two-component response regulator protein [Rhizobium etli 8C-3] Length = 209 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 4/67 (5%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ ++R S LT+RE+ L G + +I E LGLS TVN +L VKL NR Sbjct: 140 EVLRQRFS----LTQRESEVLLWIAKGKPNRDIGEILGLSARTVNKHLEQIYVKLGVENR 195 Query: 222 IQAIAKA 228 A KA Sbjct: 196 ASAAVKA 202 >gi|148240680|ref|YP_001226067.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147849219|emb|CAK24770.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 230 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ R+ L L +G ++ IA++L +S +TV +L ++LD NR A++ A+R Sbjct: 167 KTLSGRQLEILALVAEGLSNRVIAQQLQISSNTVRDHLSEIMLRLDVNNRASAVSSALRR 226 Query: 232 GYI 234 G + Sbjct: 227 GLM 229 >gi|148655092|ref|YP_001275297.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148567202|gb|ABQ89347.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 242 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 4/98 (4%) Query: 141 LANEVIIEAHGACYQVITDFLELF---KKRSSAA-RNLTERETSCLQLAGDGYTSEEIAE 196 L N+ +I +V+ F EL +R+SA LT RE L G +++EIA Sbjct: 127 LINDSVIAKPHVATRVLHQFRELAATEDERTSALFAPLTSREIEILDCIARGLSNKEIAS 186 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S TV ++ S KL +R A+ AI+ G+I Sbjct: 187 QLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRGWI 224 >gi|54297872|ref|YP_124241.1| hypothetical protein lpp1927 [Legionella pneumophila str. Paris] gi|53751657|emb|CAH13079.1| hypothetical protein lpp1927 [Legionella pneumophila str. Paris] Length = 223 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE C+ L G +++ I L LS TV +Y+ + K+D N+ + + KA+ GY Sbjct: 147 LTEREHECVFLLIRGKSAKGIGALLSLSKRTVESYIENIKNKMDCRNKAEILVKAVSNGY 206 >gi|300788348|ref|YP_003768639.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797862|gb|ADJ48237.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 223 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G ++ EIAE+L LS TV ++G KL+ +R+QA+ A G Sbjct: 159 RLTERELEVLTKLARGLSNAEIAEELVLSEGTVKTHVGRILNKLELRDRVQAVVLAYDIG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|300725937|ref|ZP_07059399.1| transcriptional regulator [Prevotella bryantii B14] gi|299776788|gb|EFI73336.1| transcriptional regulator [Prevotella bryantii B14] Length = 214 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 27/141 (19%) Query: 97 VIESSGQLSVRLEGGLLP--FAGIAFPVRLGFHKNGYVI-FTSEFLMLANEVIIEAHGAC 153 +I SS Q SV L+ LP I F +R + Y+ +E L+++ EV E Sbjct: 91 IIASSSQFSVLLKESSLPEIHEAIMFAMR----NHRYICQRMTEMLLVSREVTPEKEQI- 145 Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 NLT+ E L+ G T++EIAEK S HTVN + + Sbjct: 146 -------------------NLTKTEIEILKDIALGMTTKEIAEKRFSSFHTVNTHRKNIF 186 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL+ N +A A+R G + Sbjct: 187 RKLNVNNVHEATKYALRAGLV 207 >gi|294627058|ref|ZP_06705648.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598720|gb|EFF42867.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 213 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQL 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|229164358|ref|ZP_04292288.1| Two component transcriptional regulator, LuxR [Bacillus cereus R309803] gi|228619101|gb|EEK75997.1| Two component transcriptional regulator, LuxR [Bacillus cereus R309803] Length = 215 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|30023441|ref|NP_835072.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|228961674|ref|ZP_04123282.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pakistani str. T13001] gi|229051082|ref|ZP_04194629.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH676] gi|229112824|ref|ZP_04242356.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-15] gi|229130659|ref|ZP_04259615.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-Cer4] gi|229147955|ref|ZP_04276296.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST24] gi|296505833|ref|YP_003667533.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] gi|29899002|gb|AAP12273.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|228635605|gb|EEK92094.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST24] gi|228652998|gb|EEL08880.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-Cer4] gi|228670658|gb|EEL25970.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-15] gi|228722293|gb|EEL73691.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH676] gi|228798024|gb|EEM45029.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pakistani str. T13001] gi|296326885|gb|ADH09813.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] Length = 215 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|16331921|ref|NP_442649.1| protein kinase [Synechocystis sp. PCC 6803] gi|1001838|dbj|BAA10720.1| putative protein kinase [Synechocystis sp. PCC 6803] Length = 369 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + L G +IAE+L +S TV ++ KL+A NR QAI +A G+ Sbjct: 309 LSEREKEIVSLLAQGLRDRDIAEELHISESTVKFHVNGTLHKLNAKNRYQAIYQATVQGF 368 Query: 234 I 234 I Sbjct: 369 I 369 >gi|23015369|ref|ZP_00055147.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 209 Score = 41.2 bits (95), Expect = 0.12, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G + EIA++LG+++ TV + KLD N + A AIR G Sbjct: 148 LTAREREVLQLIARGNKNREIADELGIAIKTVETHRTKIMQKLDLHNSAELAAYAIRRGL 207 Query: 234 I 234 I Sbjct: 208 I 208 >gi|329936313|ref|ZP_08286078.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304109|gb|EGG47990.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L L +G ++ IA + G+S H V ++ + K + NR QA++ A++ G Sbjct: 168 QLTPREQAVLGLIAEGLSNRMIAHRFGISEHGVKRHVANLLAKFNCSNRAQAVSVALQQG 227 Query: 233 YIC 235 + Sbjct: 228 LLA 230 >gi|319791965|ref|YP_004153605.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315594428|gb|ADU35494.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 237 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA L+ RE L+L G+++ +IAE + LSV+T+ + S KL +R QA+ +A Sbjct: 171 SAPARLSPRELKVLRLIAQGWSNRQIAEAVYLSVNTIEFHAKSIYRKLAVKSRTQAVHEA 230 Query: 229 IRFGYI 234 ++ G + Sbjct: 231 MQHGLL 236 >gi|312959972|ref|ZP_07774486.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311285756|gb|EFQ64323.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 89 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 39/70 (55%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L ++ S + + LT E L+ A +G T EI++ S TV +L + KLD NR+ Sbjct: 18 LRRRLSLSGKPLTPSELEILRWASEGKTVWEISQIRATSQATVKFHLRNIYGKLDVSNRV 77 Query: 223 QAIAKAIRFG 232 QA+ +A+R G Sbjct: 78 QAMNEAVRQG 87 >gi|229821170|ref|YP_002882696.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567083|gb|ACQ80934.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 223 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 28/49 (57%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 TERE DG ++ EIA +L LS +V +L SA KL VNR+Q Sbjct: 159 TERERDVADAVADGLSNGEIAARLYLSTSSVKTHLSSALTKLGLVNRVQ 207 >gi|229118901|ref|ZP_04248248.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-3] gi|228664557|gb|EEL20052.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-3] Length = 215 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|166031115|ref|ZP_02233944.1| hypothetical protein DORFOR_00800 [Dorea formicigenerans ATCC 27755] gi|166028962|gb|EDR47719.1| hypothetical protein DORFOR_00800 [Dorea formicigenerans ATCC 27755] Length = 207 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 43/72 (59%), Gaps = 3/72 (4%) Query: 155 QVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+I+ EL +++S+ A +TE+E + ++L DG +++EIA ++ LS T+ Y+ Sbjct: 126 QIISRLPELLERKSAFDYATYEITEKERAVMKLVADGKSNKEIAGEMFLSEGTIRNYISG 185 Query: 212 ATVKLDAVNRIQ 223 KL+ +R Q Sbjct: 186 ILDKLNLRDRTQ 197 >gi|163800334|ref|ZP_02194235.1| nitrate/nitrite response regulator protein [Vibrio sp. AND4] gi|159175777|gb|EDP60571.1| nitrate/nitrite response regulator protein [Vibrio sp. AND4] Length = 210 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 7/121 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR 172 A I VR G +GY++ +E L ++ +AH A Q I ++L K + + Sbjct: 90 ADITAIVRSG--ADGYLLKDTEPDELVG-LLKQAHKGDKAYSQAIAEYLIANKGQENVFD 146 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-RF 231 LT+RET L+ GY ++EIAE L +S TV ++ S KL +R A + RF Sbjct: 147 TLTDRETQILKEVSRGYRNKEIAEHLFISESTVKVHMKSLLKKLKMPSRTAATVLYLERF 206 Query: 232 G 232 G Sbjct: 207 G 207 >gi|28901301|ref|NP_800956.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153835889|ref|ZP_01988556.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|260900615|ref|ZP_05909010.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] gi|28809814|dbj|BAC62789.1| putative transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|149750643|gb|EDM61388.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|308106917|gb|EFO44457.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] gi|328469239|gb|EGF40185.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 218 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L++ +G ++ EIA+ L +S HT+ ++L + KL+ NR QA + A R Sbjct: 160 LTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKR 216 >gi|258541258|ref|YP_003186691.1| LuxR family transcriptional regulator [Acetobacter pasteurianus IFO 3283-01] gi|256632336|dbj|BAH98311.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-01] gi|256635393|dbj|BAI01362.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-03] gi|256638448|dbj|BAI04410.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-07] gi|256641502|dbj|BAI07457.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-22] gi|256644557|dbj|BAI10505.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-26] gi|256647612|dbj|BAI13553.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-32] gi|256650665|dbj|BAI16599.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653656|dbj|BAI19583.1| two component response regulator LuxR [Acetobacter pasteurianus IFO 3283-12] Length = 299 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RE L G T+ +IAE L +S TVN +L + +K+ NR A A+ ++ Sbjct: 238 NLTAREAEVLFWIAKGKTNRDIAEILSISHRTVNKHLEQSYIKIGVENRAAATARVLQAL 297 Query: 233 YI 234 +I Sbjct: 298 FI 299 >gi|229035051|ref|ZP_04188998.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1271] gi|228728236|gb|EEL79265.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1271] Length = 215 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|297199099|ref|ZP_06916496.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|297147291|gb|EDY59218.2| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 224 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 159 APELTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 218 Query: 231 FG 232 G Sbjct: 219 RG 220 >gi|223934727|ref|ZP_03626647.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896682|gb|EEF63123.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 210 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A NL+ RE L+L G+ +EI +KL + TV Y+ + K+ +R++A+AK Sbjct: 148 AENLSPREQEVLELLALGFIYKEIGDKLNIGTETVRTYVKNICQKMHVRSRLEAVAK 204 >gi|94969470|ref|YP_591518.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94551520|gb|ABF41444.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 215 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L+L G+G +++ IA++L + TV +++ + KL A +R A+ +R G Sbjct: 147 HLTERELDVLRLIGEGNSNKLIADQLSIGEATVKSHVTNILSKLGASDRAHAVTIGLRRG 206 Query: 233 YI 234 I Sbjct: 207 II 208 >gi|78046817|ref|YP_362992.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|289669198|ref|ZP_06490273.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325927244|ref|ZP_08188501.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|78035247|emb|CAJ22892.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542364|gb|EGD13849.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 213 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQL 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|47177072|ref|YP_015683.1| hypothetical protein pHCG3_p118 [Oligotropha carboxidovorans OM5] gi|47115463|emb|CAG28516.1| probable TraR [Oligotropha carboxidovorans OM5] Length = 239 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 8/123 (6%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-- 173 +G++ P+R F + SE + I + A V L + ++ R Sbjct: 117 SGLSIPIRTPFGGTAILTLASEQRRVDFAGIQDTVRAMNAVAFAHAHLNRVAAAPCRRTK 176 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE +CL A G T EIA+ L + V TV YL A KL N IA A+R Sbjct: 177 YELTPREVTCLTWASLGKTMSEIADLLQIDVRTVRNYLDLAREKLGGSN----IAHAVRL 232 Query: 232 GYI 234 + Sbjct: 233 AVM 235 >gi|85702824|ref|ZP_01033928.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. 217] gi|85671752|gb|EAQ26609.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. 217] Length = 202 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 37/74 (50%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 DFLE + +LT RET L DG +++EIA L + TV +L + + KL A Sbjct: 127 DFLESGDTEAEGKVHLTPRETDVLVGVLDGKSNKEIARDLDIQEVTVKLHLKTLSRKLGA 186 Query: 219 VNRIQAIAKAIRFG 232 NR QA A G Sbjct: 187 KNRTQAAMIARDMG 200 >gi|239926785|ref|ZP_04683738.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291435114|ref|ZP_06574504.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291338009|gb|EFE64965.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 224 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 31/54 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LTERET L L G ++ EIA+ L L+ TV ++ KLD +R QA+ Sbjct: 158 KALTERETEVLTLVARGQSNGEIAQTLVLAEQTVKTHVSRILTKLDLRDRAQAV 211 >gi|206563380|ref|YP_002234143.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198039420|emb|CAR55386.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 215 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ +G ++ IA LG++ TV +LG+ KL +R QA+A A R G Sbjct: 151 LTARELEVLRCLAEGGSNARIAATLGITEKTVKTHLGNVMSKLHLSDRTQAVALAWREGL 210 Query: 234 IC 235 + Sbjct: 211 MA 212 >gi|194292793|ref|YP_002008700.1| two component response regulator transcriptional regulator protein [Cupriavidus taiwanensis LMG 19424] gi|193226697|emb|CAQ72648.1| putative TWO COMPONENT RESPONSE REGULATOR TRANSCRIPTION REGULATOR PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 226 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L GYT E A LGLSVHTV +++ + KL +R +A+ +A + G Sbjct: 163 LSVRENEILDLISRGYTYAETARYLGLSVHTVQSHIKNIYGKLAVRSRGEAVFEAAKLGL 222 Query: 234 I 234 + Sbjct: 223 L 223 >gi|218437044|ref|YP_002375373.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218169772|gb|ACK68505.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 229 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EI +KL LS TV Y+ S K + NR A+ +RF Sbjct: 168 LTEREKQVLELLAQGLSNVEIGQKLHLSPRTVEKYVSSLLRKTETNNR----AELVRFA 222 >gi|21241983|ref|NP_641565.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107378|gb|AAM36101.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 214 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 154 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQL 213 Query: 234 I 234 + Sbjct: 214 V 214 >gi|84624990|ref|YP_452362.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166711074|ref|ZP_02242281.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188575549|ref|YP_001912478.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|289665304|ref|ZP_06486885.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|84368930|dbj|BAE70088.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520001|gb|ACD57946.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 213 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQL 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|75760127|ref|ZP_00740188.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900537|ref|YP_002448948.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903890|ref|ZP_04068005.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 4222] gi|228968544|ref|ZP_04129531.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar sotto str. T04001] gi|74492399|gb|EAO55554.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542579|gb|ACK94973.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228791148|gb|EEM38763.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar sotto str. T04001] gi|228855799|gb|EEN00344.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 4222] Length = 215 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|110633153|ref|YP_673361.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284137|gb|ABG62196.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 82 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL+ RE ++L G T++EIA+KL +S TV Y+ KL A NR++ + A G Sbjct: 6 NLSVREDQIVRLLLLGRTNKEIAQKLKISEKTVKHYMSLLMQKLQARNRVEVVLAAQELG 65 >gi|328882053|emb|CCA55292.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 201 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L A DG T +IA L LS TV YL SA K NR++A+ A + G+ Sbjct: 141 LTARERDALAAAVDGATIADIAAALHLSESTVRNYLSSAIGKTGTRNRMEAVRAARQQGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|328765792|gb|EGF75911.1| hypothetical protein BATDEDRAFT_93225 [Batrachochytrium dendrobatidis JAM81] Length = 152 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + G T++EIA +G+S TV Y+ A KL+A NR +A+ R G Sbjct: 91 LSNREFEVMNKISYGETTKEIASSMGISELTVKQYVKLALKKLNAANRAHGVAELFRLG 149 >gi|327330788|gb|EGE72534.1| two-component system response regulator [Propionibacterium acnes HL097PA1] Length = 83 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A Sbjct: 10 SKAEQLTAREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALA 69 Query: 229 IRFGYI 234 G I Sbjct: 70 YESGLI 75 >gi|322388622|ref|ZP_08062222.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321140542|gb|EFX36047.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 199 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L G +++EIA+KL LS TV Y+ + KL A NR Sbjct: 127 ELMEVMMTHPNPLTEQEVAVLHGVAQGLSNQEIADKLYLSNGTVRNYMTNILSKLGASNR 186 Query: 222 IQAIAKAIRFGYI 234 +A A G++ Sbjct: 187 TEAAKTAEEEGWL 199 >gi|326201001|ref|ZP_08190873.1| transcriptional regulator, LuxR family [Clostridium papyrosolvens DSM 2782] gi|325988569|gb|EGD49393.1| transcriptional regulator, LuxR family [Clostridium papyrosolvens DSM 2782] Length = 256 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 5/109 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLA 185 G + S + L E+II YQV T+ +E+ KR + +E++ L+L Sbjct: 144 GSIAVASTGIPLKKELIIITELLAYQV-TNEVEVAGQGMAKRLVSQMKFSEKQLLVLKLL 202 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T + +A G+S++TV + KLD N I A+ KA+++ I Sbjct: 203 AKGMTEKAVAIDSGISINTVRYHKKIIFRKLDTGNVIDAVVKALKYNLI 251 >gi|289577632|ref|YP_003476259.1| LuxR family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|297543934|ref|YP_003676236.1| LuxR family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527345|gb|ADD01697.1| transcriptional regulator, LuxR family [Thermoanaerobacter italicus Ab9] gi|296841709|gb|ADH60225.1| transcriptional regulator, LuxR family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 260 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 2/107 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGD 187 GY+ ++ +A+EV + ++ +++ ++ K++ + L + + L L Sbjct: 151 GYIDISTIDKKIADEVSMVKKLLAEKIASEYEKIVKEKELNEIKIKLNDNQIKILALEAK 210 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY +IAE LG+ V TV + KL N +A+AKAI+ G I Sbjct: 211 GYRELDIAEALGIGVVTVKYHKRKIVEKLGVKNIKEAVAKAIKLGLI 257 >gi|229176087|ref|ZP_04303581.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3] gi|228607431|gb|EEK64759.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3] Length = 215 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|194364877|ref|YP_002027487.1| two component LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347681|gb|ACF50804.1| two component transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 213 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQL 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|116070777|ref|ZP_01468046.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116066182|gb|EAU71939.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 228 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G T +EIAE L +S T Y L+ NR+QA+ K +R G Sbjct: 165 RLTPREYEVLDRLARGMTDKEIAEALVVSEQTARTYTKRLLKTLEVNNRVQAVLKGMRCG 224 Query: 233 YI 234 + Sbjct: 225 MV 226 >gi|89068253|ref|ZP_01155663.1| transcriptional regulator, LuxR family protein [Oceanicola granulosus HTCC2516] gi|89046170|gb|EAR52228.1| transcriptional regulator, LuxR family protein [Oceanicola granulosus HTCC2516] Length = 202 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT E L++ DG ++IA +LG+S V L +A KL+A QA A FG Sbjct: 141 NLTAAELEALRMVKDGQRVKQIAHELGVSEGAVKQRLKNAKRKLNAATSAQAATMATEFG 200 Query: 233 YI 234 I Sbjct: 201 LI 202 >gi|302533152|ref|ZP_07285494.1| two-component system response regulator [Streptomyces sp. C] gi|302442047|gb|EFL13863.1| two-component system response regulator [Streptomyces sp. C] Length = 216 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + L+L G T+ EI+ +L + TV +++ + KL A +R QA+ A G+ Sbjct: 153 LTEREEAVLRLMARGLTNVEISRELIVGTETVKSHVSAVLGKLGARDRTQAVIAAYESGF 212 Query: 234 IC 235 + Sbjct: 213 VS 214 >gi|239992911|ref|ZP_04713435.1| two-component system regulatory protein [Alteromonas macleodii ATCC 27126] Length = 214 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E L+L GY+++EIA+ + S T+ + S KL +R +A+ KA+ G Sbjct: 154 LTEKEVEILRLIAAGYSNKEIADAMFKSTGTIKNQVSSIMAKLGVRDRTRAVLKALEQGV 213 Query: 234 I 234 I Sbjct: 214 I 214 >gi|228942557|ref|ZP_04105092.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975490|ref|ZP_04136045.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982123|ref|ZP_04142415.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis Bt407] gi|228777661|gb|EEM25936.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis Bt407] gi|228784284|gb|EEM32308.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817150|gb|EEM63240.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943209|gb|AEA19105.1| two-component response regulator yhcZ [Bacillus thuringiensis serovar chinensis CT-43] Length = 215 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|229099838|ref|ZP_04230762.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-29] gi|228683584|gb|EEL37538.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-29] Length = 215 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|206970021|ref|ZP_03230974.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229193664|ref|ZP_04320607.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 10876] gi|206734598|gb|EDZ51767.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228589817|gb|EEK47693.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 10876] Length = 215 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|153832308|ref|ZP_01984975.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01] gi|148871619|gb|EDL70474.1| DNA-binding HTH domain-containing protein [Vibrio harveyi HY01] Length = 217 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/57 (43%), Positives = 34/57 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G ++ +IA+ L +S HTV ++L S KL+ NR+QAIA A R Sbjct: 158 LTRREMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAIAWAKR 214 >gi|126731865|ref|ZP_01747669.1| putative two-component response regulator [Sagittula stellata E-37] gi|126707692|gb|EBA06754.1| putative two-component response regulator [Sagittula stellata E-37] Length = 217 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 37/76 (48%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I + L + LT+RET L L G + E+A +LGL+ TV +Y+ S KL Sbjct: 131 IMEHFSLTGPSAPPTHGLTDRETEVLALISRGLRNSEVARELGLAETTVASYIKSIYGKL 190 Query: 217 DAVNRIQAIAKAIRFG 232 +R +A A R G Sbjct: 191 GISSRAEASWHATRLG 206 >gi|108805421|ref|YP_645358.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766664|gb|ABG05546.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 232 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L L G T+ EIA +L +S T +++ + KL +R QA+A+A Sbjct: 159 AEELTAREREVLVLMARGRTNPEIARELVISRGTAKSHVQNIIRKLGVSDRTQAVARAFE 218 Query: 231 FGYI 234 G I Sbjct: 219 LGLI 222 >gi|323357049|ref|YP_004223445.1| ATP-dependent transcriptional regulator [Microbacterium testaceum StLB037] gi|323273420|dbj|BAJ73565.1| ATP-dependent transcriptional regulator [Microbacterium testaceum StLB037] Length = 780 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 20/43 (46%), Positives = 28/43 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LT RE +QLA G+++ EIA +L LSV TV ++L A +L Sbjct: 718 LTAREREVVQLAAAGFSNAEIAARLNLSVRTVESHLHHARTRL 760 >gi|312876261|ref|ZP_07736247.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor lactoaceticus 6A] gi|311796907|gb|EFR13250.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor lactoaceticus 6A] Length = 215 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 19/115 (16%) Query: 124 LGFHKNGYVIFTSE--------FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-- 173 L F +GY++ +S+ + +L +V+ + A + I++ L+ K+ SS + N Sbjct: 95 LSFGADGYILKSSDAQHIIDTIYAVLDGKVVFDREIALF--ISNTLK--KEASSFSGNVN 150 Query: 174 -----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE ++L GY+++EIA L +S TV Y+ S KL NR Q Sbjct: 151 VLKNELTERELDIVKLIAQGYSNKEIANLLFISEGTVRNYISSILQKLQLQNRTQ 205 >gi|309812367|ref|ZP_07706122.1| putative nitrate/nitrite response regulator protein NarL [Dermacoccus sp. Ellin185] gi|308433672|gb|EFP57549.1| putative nitrate/nitrite response regulator protein NarL [Dermacoccus sp. Ellin185] Length = 237 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A LT RE+ L++ G S++IA +LGLS TV+ ++ + KL NR++ Sbjct: 174 ASALTPRESEVLRMVAKGLASKQIASRLGLSSRTVDNHVAATLRKLHLANRVE 226 >gi|326792209|ref|YP_004310030.1| LuxR family transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326542973|gb|ADZ84832.1| two component transcriptional regulator, LuxR family [Clostridium lentocellum DSM 5427] Length = 210 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E KKR + + TERE ++ DG+T+++IA+ L +S TV Y+ + K NR Sbjct: 141 EALKKRENPY-DFTEREVQIAEMMKDGFTNKQIAKTLYISEGTVKNYVSNIYAKTQTENR 199 Query: 222 IQA 224 ++A Sbjct: 200 VEA 202 >gi|229199533|ref|ZP_04326194.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1293] gi|228583938|gb|EEK42095.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1293] Length = 215 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|300778489|ref|ZP_07088347.1| LuxR family transcriptional regulator GerE [Chryseobacterium gleum ATCC 35910] gi|300503999|gb|EFK35139.1| LuxR family transcriptional regulator GerE [Chryseobacterium gleum ATCC 35910] Length = 245 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+ RE L+ G+GY S+EIA+ L +SV+TV+ + + KL N QA Sbjct: 189 LSPRELEVLKFVGEGYASKEIADMLSISVNTVSRHRQNILEKLKVKNSTQA 239 >gi|209886605|ref|YP_002290462.1| response regulator [Oligotropha carboxidovorans OM5] gi|209874801|gb|ACI94597.1| response regulator [Oligotropha carboxidovorans OM5] Length = 229 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RET L+L G G E A LGL+ HTV Y+ KL+ +R +A +A R G Sbjct: 168 SLTARETDVLRLLGRGLRVAETARVLGLTPHTVAGYVKVIYRKLNISSRAEAAIEANRRG 227 >gi|313108775|ref|ZP_07794763.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310881265|gb|EFQ39859.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 740 Score = 41.2 bits (95), Expect = 0.13, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L L G +++EI E+L +S+HTV + KL R QA+A+A G Sbjct: 679 LSCRELAVLGLIAQGCSNQEIGEQLFISLHTVKTHARRINGKLGVARRTQAVARAKALGL 738 Query: 234 I 234 + Sbjct: 739 L 739 >gi|326771785|ref|ZP_08231070.1| two-component system response regulator TcsR2 [Actinomyces viscosus C505] gi|326637918|gb|EGE38819.1| two-component system response regulator TcsR2 [Actinomyces viscosus C505] Length = 203 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L A G + EIA +L L TV YL SA K A NR +A A G+ Sbjct: 143 LTEREKEVLLAAATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGW 202 Query: 234 I 234 + Sbjct: 203 L 203 >gi|300859114|ref|YP_003784097.1| LuxR family transcriptional regulator [Corynebacterium pseudotuberculosis FRC41] gi|300686568|gb|ADK29490.1| LuxR-family transcription regulator [Corynebacterium pseudotuberculosis FRC41] Length = 279 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L G+T+ E AE++G+ TV +YL S KL A R +A+ A R G Sbjct: 217 KLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 276 Query: 233 YI 234 + Sbjct: 277 AL 278 >gi|295134050|ref|YP_003584726.1| two-component response regulator [Zunongwangia profunda SM-A87] gi|294982065|gb|ADF52530.1| two-component response regulator [Zunongwangia profunda SM-A87] Length = 214 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L R ++ LT+RE LQL +T++EIA+ L LS HT+ +Y + KL+ N Sbjct: 143 LTNSRKASEIRLTQREKEVLQLIAKEHTTQEIADMLFLSKHTIESYRKNLINKLEVRN 200 >gi|291301186|ref|YP_003512464.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570406|gb|ADD43371.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%) Query: 151 GACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 A ++I + + R++A R+ LT RET L+ G T+ EIA L + TV Sbjct: 128 AAARRLIERYHRAARPRATAVRHRVDRLTPRETDVLRHLALGATNAEIAASLSMRESTVK 187 Query: 207 AYLGSATVKLDAVNRIQA 224 A++ LD NR+QA Sbjct: 188 AHVTRILATLDVTNRVQA 205 >gi|330876121|gb|EGH10270.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 240 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 ++R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 175 SSRGLTLRELEVLQWARDGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEAL 234 Query: 230 RFGYI 234 G I Sbjct: 235 CRGLI 239 >gi|319652400|ref|ZP_08006516.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317395862|gb|EFV76584.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 210 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE + L+ G+G ++ EIAE+L +S TV KLD +R Q AIR Sbjct: 149 SLTPRERAILKCIGEGLSNNEIAERLAISTGTVKNNTSQILTKLDLRDRTQLAIYAIRHN 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|297583277|ref|YP_003699057.1| LuxR family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141734|gb|ADH98491.1| transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 219 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 4/64 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV--KLDAVNRIQAIAKAIRF 231 L + E L+ +G + + IAE+ G S+ T+ YL S + DA++R A+ KAIR Sbjct: 150 LNQTEKYVLEGLANGQSPKTIAEEKGCSLSTI--YLASMNIVRHFDAIDRTDAVVKAIRQ 207 Query: 232 GYIC 235 Y+C Sbjct: 208 NYLC 211 >gi|288904712|ref|YP_003429933.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|306830715|ref|ZP_07463880.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977633|ref|YP_004287349.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731437|emb|CBI12989.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] gi|304427223|gb|EFM30330.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177561|emb|CBZ47605.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 214 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 2/104 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS + N + A G A + ++ + +LT RE L+L Sbjct: 102 KGYMLKTSSAAEILNAIQKVARGELAIETEVDKKIKAHDMQPELHEDLTARERDILRLLA 161 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 162 KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFK 205 >gi|254522679|ref|ZP_05134734.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219720270|gb|EED38795.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 201 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 35/55 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 141 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKA 195 >gi|196233033|ref|ZP_03131881.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196222840|gb|EDY17362.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 212 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L L G+++ EI LG++ T A++ + VKL+A +R +A+ A + G Sbjct: 146 RLSPREVETLDLLARGFSNREIGSALGVTERTAKAHVQAILVKLEAADRAEAVDAAYKRG 205 Query: 233 YI 234 + Sbjct: 206 LL 207 >gi|87309030|ref|ZP_01091168.1| two-component system response regulator-like protein (Nar family protein) [Blastopirellula marina DSM 3645] gi|87288373|gb|EAQ80269.1| two-component system response regulator-like protein (Nar family protein) [Blastopirellula marina DSM 3645] Length = 221 Score = 41.2 bits (95), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + L+ RE QL G G TS IA++L LSVHT+ ++ KL R+Q + +A+ Sbjct: 155 ALQRLSNRELEIFQLIGRGMTSGVIAKQLHLSVHTIESHREKIRRKLRVKGRVQLMQEAL 214 Query: 230 RF 231 + Sbjct: 215 NW 216 >gi|311898876|dbj|BAJ31284.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 246 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A Sbjct: 180 SAYRELSGREVEVLRLVAEGQSNKAIGVAMGLSALTVKSHLARIARKLGTGDRAGMVAVA 239 Query: 229 IRFGYI 234 +R G I Sbjct: 240 LRTGII 245 >gi|302206808|gb|ADL11150.1| Hypothetical protein CpC231_1689 [Corynebacterium pseudotuberculosis C231] gi|308277060|gb|ADO26959.1| Hypothetical protein CpI19_1705 [Corynebacterium pseudotuberculosis I19] Length = 279 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L G+T+ E AE++G+ TV +YL S KL A R +A+ A R G Sbjct: 217 KLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 276 Query: 233 YI 234 + Sbjct: 277 AL 278 >gi|294666925|ref|ZP_06732155.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603297|gb|EFF46718.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 213 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQL 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|327405216|ref|YP_004346054.1| LuxR family transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327320724|gb|AEA45216.1| transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 259 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R SA LTERE L+L G T +IA+K+ ++ TV Y +L N ++A+A Sbjct: 192 RKSAKPTLTEREIEILRLHAQGLTINQIADKIFVAPDTVKYYRRRIFERLSVTNIVEALA 251 Query: 227 KAI 229 A+ Sbjct: 252 YAV 254 >gi|308176214|ref|YP_003915620.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743677|emb|CBT74649.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 224 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%) Query: 149 AHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 A +VI++F SA +LT RE L +G ++ EIAE+L + + TV Sbjct: 128 APAVTRRVISEFARRRAPAARESADADLTPREREVLAALAEGSSNAEIAEQLFIEIGTVK 187 Query: 207 AYLGSATVKLDAVNRIQAIAKA 228 ++ S +KL +R+QAI A Sbjct: 188 THVSSIILKLGVRDRVQAIVWA 209 >gi|302867778|ref|YP_003836415.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315505818|ref|YP_004084705.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302570637|gb|ADL46839.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412437|gb|ADU10554.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 208 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%) Query: 167 RSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R+ A R +LT RE L L DG ++ EIA++L + V TV ++ S K + NR++ Sbjct: 141 RAGAPRRTADLTAREQDVLDLVADGLSNTEIADRLHIGVTTVKTHITSLMTKTGSANRVR 200 >gi|229056740|ref|ZP_04196143.1| Sensory transduction protein ydfI [Bacillus cereus AH603] gi|228720587|gb|EEL72150.1| Sensory transduction protein ydfI [Bacillus cereus AH603] Length = 207 Score = 40.8 bits (94), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 NLTE+E L+ GY ++EIA +G++ TV AYL + KL +R +A+A +I Sbjct: 144 NLTEKELFVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSI 200 >gi|302561891|ref|ZP_07314233.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] gi|302479509|gb|EFL42602.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] Length = 220 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L G T+ EIA KL + TV +++ + KL A +R QA+ A G++ Sbjct: 158 TGREGEVLRLMARGLTNAEIAAKLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGFV 217 Query: 235 C 235 Sbjct: 218 A 218 >gi|256830668|ref|YP_003159396.1| LuxR family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256579844|gb|ACU90980.1| transcriptional regulator, LuxR family [Desulfomicrobium baculatum DSM 4028] Length = 335 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 38/58 (65%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +L++RE L + G T+++IA+KL LS++TV +++ + K+D NR+QA A R Sbjct: 270 DLSQREQEILLMLAAGATNKDIAQKLFLSLNTVKSHIYNIYKKIDVPNRLQASLWAAR 327 >gi|153832913|ref|ZP_01985580.1| nitrate/nitrite response regulator protein NarP [Vibrio harveyi HY01] gi|148870836|gb|EDL69735.1| nitrate/nitrite response regulator protein NarP [Vibrio harveyi HY01] Length = 210 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 7/123 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAAR 172 A I VR G +GY++ +E L E++ +AH A Q + +L + + Sbjct: 90 ADIEAIVRSG--ADGYLLKDTEPDELV-ELLKQAHEGDKAYSQAVAKYLNEREGQEDVFD 146 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-RF 231 LT+RET LQ G+ +++IA++L +S TV ++ S KL +R A + RF Sbjct: 147 TLTDRETQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKKLKVPSRTAATVLYLERF 206 Query: 232 GYI 234 G I Sbjct: 207 GEI 209 >gi|290955970|ref|YP_003487152.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260645496|emb|CBG68584.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + K + LT RE L L G T+++I+E+L LS HTV ++ A K+ R Q Sbjct: 148 WAKETERLAELTPREREMLVLVASGLTNDDISERLQLSRHTVKTHVNRAMTKIGVSERAQ 207 Query: 224 AIAKAIRFGYI 234 + A G + Sbjct: 208 LVTIAYESGLV 218 >gi|260362858|ref|ZP_05775727.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030] gi|260880146|ref|ZP_05892501.1| putative transcriptional regulator [Vibrio parahaemolyticus AN-5034] gi|260895263|ref|ZP_05903759.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466] gi|308085787|gb|EFO35482.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466] gi|308092058|gb|EFO41753.1| putative transcriptional regulator [Vibrio parahaemolyticus AN-5034] gi|308112231|gb|EFO49771.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030] Length = 214 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L++ +G ++ EIA+ L +S HT+ ++L + KL+ NR QA + A R Sbjct: 156 LTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWAKR 212 >gi|257482053|ref|ZP_05636094.1| regulatory protein, LuxR [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 687 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 626 LSVRELGVLHLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKVLGL 685 Query: 234 I 234 + Sbjct: 686 L 686 >gi|302544315|ref|ZP_07296657.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461933|gb|EFL25026.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 229 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 2/107 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGD 187 G+++ +E L N V A G + L + S LTERET L + Sbjct: 101 GFLLKNAEADDLRNAVKAAAAGQIHVSPAAISRLMGQVREPSGPEQLTERETEVLTMLAR 160 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++EIA L + TV Y+ KL +R QA A++ G + Sbjct: 161 GKANKEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLV 207 >gi|238060490|ref|ZP_04605199.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237882301|gb|EEP71129.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 226 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G +++EIAE++ LS TV A++ A KL+A +R Q + A + G Sbjct: 158 LTAREREMVALVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYQTG 216 >gi|190573276|ref|YP_001971121.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011198|emb|CAQ44808.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 213 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQL 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|21230586|ref|NP_636503.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769421|ref|YP_244183.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992608|ref|YP_001904618.1| Two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|21112164|gb|AAM40427.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574753|gb|AAY50163.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734368|emb|CAP52578.1| Two-component system regulatory protein [Xanthomonas campestris pv. campestris] Length = 213 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQL 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|326329284|ref|ZP_08195609.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325952859|gb|EGD44874.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 231 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ LT+RE L+ G+T+ EIAE+L +S TV +++G KLD +R A Sbjct: 160 RAVEVSELTDRELEVLRGLASGWTNSEIAERLVISELTVKSHIGRIFAKLDLRDR----A 215 Query: 227 KAIRFGY 233 AI F Y Sbjct: 216 AAIVFAY 222 >gi|325277459|ref|ZP_08143066.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097402|gb|EGB95641.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 82 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 33/67 (49%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT RE L G +S EI + L TVN ++ + K D R+ A+ K Sbjct: 13 ADAPVRLTPREQQVLLWCAYGKSSWEIGQILACKESTVNFHVSNILRKFDVPTRVAAVIK 72 Query: 228 AIRFGYI 234 AIR+G + Sbjct: 73 AIRYGML 79 >gi|297159287|gb|ADI08999.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 225 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 10/114 (8%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----------LTERET 179 GY++ ++ +A+ + A G + +E+ + AR+ LT RE Sbjct: 106 GYLLKSASGDEIADAIRSAAEGETLIPASTLVEVLARHRETARSSAQQTERLESLTPREQ 165 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G + +AE+L +S TV ++ KL+ ++++A+AKA +G+ Sbjct: 166 EILTLMSQGLDNRAVAERLSISYATVRTHVRKILEKLEVRSQLEAVAKAADWGF 219 >gi|222066054|emb|CAX21482.1| ppoR luxR family protein [Pseudomonas putida] Length = 235 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ERE L+ + G T+ ++A L LS TVN ++ S K +A N+ AIA A G Sbjct: 174 KMSERELEVLRWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNASNKAGAIAIAALRG 233 Query: 233 YI 234 +I Sbjct: 234 WI 235 >gi|164511465|emb|CAN89666.1| putative LuxR family regulator [Streptomyces collinus] Length = 109 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 32/64 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +A L+ RE L G T IA ++GLS HTV+ Y+ K VNRIQ A Sbjct: 42 SALTLSPREQEVLAHLAQGCTYRIIARRMGLSPHTVDTYVRRLRGKTGLVNRIQLAHLAF 101 Query: 230 RFGY 233 + GY Sbjct: 102 QLGY 105 >gi|28869252|ref|NP_791871.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852493|gb|AAO55566.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|330964604|gb|EGH64864.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016917|gb|EGH96973.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 240 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 ++R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 175 SSRGLTLRELEVLQWARDGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEAL 234 Query: 230 RFGYI 234 G I Sbjct: 235 CRGLI 239 >gi|38234459|ref|NP_940226.1| putative transcriptional regulator [Corynebacterium diphtheriae NCTC 13129] gi|38200722|emb|CAE50418.1| Putative transcriptional regulator [Corynebacterium diphtheriae] Length = 281 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L G+T+ E AE++G+ TV +YL S KL A R +A+ A R G Sbjct: 219 KLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 278 Query: 233 YI 234 + Sbjct: 279 AL 280 >gi|152965549|ref|YP_001361333.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151360066|gb|ABS03069.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 200 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 3/109 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRS--SAARNLTERETSCLQLA 185 N V+ +S A + A CY V T + F+ R + +L+ERE LQ Sbjct: 91 NRCVVLSSNADPFAVRGAVAAGVRCYLVTTRPEGVGFEGRGGENGVDSLSEREIEVLQHV 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++++ LGLS TV ++L KL +R + +A +R G I Sbjct: 151 ADGRSNKDTGAALGLSALTVKSHLARIARKLGTGDRAEMVAITLRAGVI 199 >gi|326330415|ref|ZP_08196723.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|325951690|gb|EGD43722.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] Length = 362 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 29/74 (39%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 163 LFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L R AAR LT RE L G T+ EIA++L +S TV +++ KL Sbjct: 282 LPPPRQPAARGAMSGLTAREQDVFALLVSGATNPEIADRLTVSETTVKSHVKHILRKLRV 341 Query: 219 VNRIQAIAKAIRFG 232 NR +AIAK +R G Sbjct: 342 SNRAEAIAKYVRGG 355 >gi|302331370|gb|ADL21564.1| LuxR family transcriptional regulator [Corynebacterium pseudotuberculosis 1002] Length = 279 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L G+T+ E AE++G+ TV +YL S KL A R +A+ A R G Sbjct: 217 KLSARELDVLSCVALGHTNVEAAEEMGIGAETVKSYLRSVMRKLGAHTRYEAVNAARRIG 276 Query: 233 YI 234 + Sbjct: 277 AL 278 >gi|285017693|ref|YP_003375404.1| two-component system regulatory protein, luxr family [Xanthomonas albilineans GPE PC73] gi|283472911|emb|CBA15416.1| probable two-component system regulatory protein, luxr family [Xanthomonas albilineans] Length = 213 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 5/74 (6%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 Q+ DF+ L + LT+RET L+L G++++EIA LG++ T+ ++ + Sbjct: 139 QMRNDFVSLDRPDP-----LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILS 193 Query: 215 KLDAVNRIQAIAKA 228 KL +R +A+ KA Sbjct: 194 KLGVRDRTRAVLKA 207 >gi|260575093|ref|ZP_05843094.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2] gi|259022715|gb|EEW26010.1| transcriptional regulator, LuxR family [Rhodobacter sp. SW2] Length = 267 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 RNLT+R+ L+ DG T+++I++ + +SV V +L A L+ QA+AKA Sbjct: 185 RNLTDRQRQALEWVADGKTTQDISQLMRISVAMVEKHLRLAREALEVDTTAQAVAKA 241 >gi|257790333|ref|YP_003180939.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|317489781|ref|ZP_07948280.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|257474230|gb|ACV54550.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|316911127|gb|EFV32737.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 213 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE++ ++L +G ++EIA +L LS TV ++ + KLD NR Q + + R Sbjct: 154 GLTERESAIVELVAEGLDNKEIAARLYLSEGTVRNHISAILQKLDLKNRTQLVVRYYR 211 >gi|224282918|ref|ZP_03646240.1| two component transcriptional regulator, LuxR family protein [Bifidobacterium bifidum NCIMB 41171] gi|311064202|ref|YP_003970927.1| two-component transcriptional regulator [Bifidobacterium bifidum PRL2010] gi|310866521|gb|ADP35890.1| Two-component transcriptional regulator [Bifidobacterium bifidum PRL2010] Length = 226 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F +L + A ++ RE L L G T IA++LG+ TV + S+ KL+A Sbjct: 145 FDQLAHETPKRADLVSNREVQVLDLMSRGLTDLSIAKRLGIKAATVRKHAQSSMQKLNAE 204 Query: 220 NRIQAIAK 227 NR+QA+ K Sbjct: 205 NRVQAVLK 212 >gi|182677961|ref|YP_001832107.1| two component LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633844|gb|ACB94618.1| two component transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 309 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 31/58 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 NLT RE L G ++ +I E LGLS TV+ +L K+ NR+ A A AI+ Sbjct: 247 NLTSREAEVLTWVARGKSNRDIGEILGLSPRTVDKHLEQVYAKIGVENRVAATALAIQ 304 >gi|331267046|ref|YP_004326676.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|326683718|emb|CBZ01336.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 199 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 41/73 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L+ G +++EIA++L LS TV Y+ + KLDA NR Sbjct: 127 ELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNR 186 Query: 222 IQAIAKAIRFGYI 234 +A A G++ Sbjct: 187 TEAANIATESGWL 199 >gi|296330376|ref|ZP_06872857.1| two-component response regulator (YvfT) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676019|ref|YP_003867691.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152644|gb|EFG93512.1| two-component response regulator (YvfT) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414263|gb|ADM39382.1| two-component response regulator (paired with YvfT) [Bacillus subtilis subsp. spizizenii str. W23] Length = 200 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+LA G T+++I +L LS TV Y+ KLDA NR +A + A G+ Sbjct: 140 LTVREQEILRLAALGKTTKDITLELYLSQGTVRNYISEIIQKLDAKNRTEAASIAEEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|239944210|ref|ZP_04696147.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990666|ref|ZP_04711330.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447682|ref|ZP_06587072.1| two-component system regulator [Streptomyces roseosporus NRRL 15998] gi|291350629|gb|EFE77533.1| two-component system regulator [Streptomyces roseosporus NRRL 15998] Length = 224 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERET L L G ++ EIA +L ++ TV ++G VKL +R QA A G Sbjct: 158 DLTERETEVLTLIASGLSNAEIARQLIVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 217 Query: 233 YI 234 + Sbjct: 218 LV 219 >gi|218289507|ref|ZP_03493735.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218240375|gb|EED07557.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 210 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE+ L+ G +++EIA++L +S TV A+L KL +R A AIR G Sbjct: 149 QLTPRESQILRQVTKGLSNKEIADRLQISERTVKAHLQHIFDKLGVQDRTSAAVLAIRHG 208 Query: 233 YI 234 ++ Sbjct: 209 WM 210 >gi|222110965|ref|YP_002553229.1| two component LuxR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221730409|gb|ACM33229.1| two component transcriptional regulator, LuxR family [Acidovorax ebreus TPSY] Length = 262 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 14/110 (12%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA-----------RNLT 175 GY++ S F V+ A+G + L+ F +AA L+ Sbjct: 144 GYLVKNSWFGSYPQAVLQVANGGASITPNLARRLLQRFDPSGAAAPHAQRRVEQETERLS 203 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +RE L++ GYTS EI +L +S TVN ++ + KL R QA+ Sbjct: 204 QREKEVLRMVASGYTSAEIGNRLFISSLTVNTHIKNIYRKLQVRTRAQAV 253 >gi|118465644|ref|YP_883262.1| response regulator receiver domain-containing protein [Mycobacterium avium 104] gi|118166931|gb|ABK67828.1| response regulator receiver domain [Mycobacterium avium 104] Length = 221 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+ G ++++IAEKL LS TV ++ + KL NR++ AI G Sbjct: 157 RLTDRETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHG 216 >gi|41409373|ref|NP_962209.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398193|gb|AAS05823.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 221 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+ G ++++IAEKL LS TV ++ + KL NR++ AI G Sbjct: 157 RLTDRETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHG 216 >gi|254414589|ref|ZP_05028354.1| Sigma-70, region 4 family [Microcoleus chthonoplastes PCC 7420] gi|196178437|gb|EDX73436.1| Sigma-70, region 4 family [Microcoleus chthonoplastes PCC 7420] Length = 217 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 37/66 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S+A LT+RE L L G +++EI E L ++ TV ++ + KLD +R QA A Sbjct: 150 SSANPLTQREQEILALIAAGKSNQEIGELLHIATGTVRVHVHAILQKLDVRDRTQAAVLA 209 Query: 229 IRFGYI 234 I+ G + Sbjct: 210 IQKGLV 215 >gi|220920878|ref|YP_002496179.1| two component LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945484|gb|ACL55876.1| two component transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 232 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE ++L G+T++EIA KLG++ ++ Y A+ KLD R + + A+ G Sbjct: 160 SLTNREREVIRLIALGFTNKEIAGKLGITAKSIETYRTRASEKLDIRTRAKIVQYAMAQG 219 Query: 233 Y 233 + Sbjct: 220 W 220 >gi|149912597|ref|ZP_01901131.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] gi|149813003|gb|EDM72829.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] Length = 206 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query: 166 KRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KR A R LT RE+ ++ G T+ +I+ +L +S TV Y+GS K A NR++ Sbjct: 138 KRKEAERLRLTARESQVVRHLMQGMTNGQISVELNISEKTVKHYVGSLKDKFGAANRLEV 197 Query: 225 IAKAIRFG 232 + +A R G Sbjct: 198 VLEAQRLG 205 >gi|118470646|ref|YP_887553.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118171933|gb|ABK72829.1| DNA-binding response regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 219 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 10/114 (8%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-ACYQ------VITDFLELFKKRSS---AARNLTERE 178 GY++ ++ LA+ V A G A + V+ ++ + ++ + A LTERE Sbjct: 103 TGYLVKSASRTELADAVRATAEGRAVFTPGLAGLVLGEYRRIAQQPAQEGPATPTLTERE 162 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T L+ G T+++IA +L LS TV ++ + KL NR++ AI G Sbjct: 163 TEILRYVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHG 216 >gi|330961312|gb|EGH61572.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 240 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +R LT RE LQ A DG + EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 176 SRGLTHRELETLQWARDGKNAWEISVIRDISEATVKYHLKAIYAKLGVANRAQAVGEALC 235 Query: 231 FGYI 234 G I Sbjct: 236 RGLI 239 >gi|295696008|ref|YP_003589246.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295411610|gb|ADG06102.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 223 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L +GY+++E+A+ L + V TV ++ + KL +R QA+ A + G Sbjct: 157 QLTDREREVLLLLAEGYSNQEVADALHIGVKTVKFHVTNILDKLQVEDRTQAVIYAYKHG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|83593270|ref|YP_427022.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576184|gb|ABC22735.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 254 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L + G E+A++LG++ T +LG+A KL A QA+A+A+ G Sbjct: 165 HLTNRERESLIWSARGCQVGEVADRLGVADRTAEHHLGAARRKLMARTTAQAVARALAMG 224 Query: 233 YI 234 + Sbjct: 225 LL 226 >gi|313499034|gb|ADR60400.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 127 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L RE L G T++EIA ++ +S TV + +A KL+A RI+A+ KA+R Sbjct: 15 KALAPRELEALLWVAQGLTTKEIARQMAVSPGTVANRIEAALFKLEAGRRIEAVTKAMR 73 >gi|303257286|ref|ZP_07343300.1| transcriptional regulatory protein FixJ [Burkholderiales bacterium 1_1_47] gi|302860777|gb|EFL83854.1| transcriptional regulatory protein FixJ [Burkholderiales bacterium 1_1_47] Length = 218 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +L N+VI EA + K+ + R+LT RE +LA DG T++EI+ L Sbjct: 120 LLLNKVIAEASQKSLSTQPKNSQR-KEEYARYRSLTPREKEIFKLAADGKTNKEISSLLN 178 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAI 225 +++ TV + G+A KL+ + ++A+ Sbjct: 179 IALPTVKMHRGNAFDKLNVHSSVEAL 204 >gi|297161527|gb|ADI11239.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+L G ++ EIA++L ++ TV ++ + KL +R QA+ A G Sbjct: 160 RLSEREAEVLRLMTTGLSNAEIADRLTVAPATVKTHVATVLAKLGVRDRTQAVIAAYECG 219 Query: 233 YI 234 ++ Sbjct: 220 FV 221 >gi|270264592|ref|ZP_06192857.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041275|gb|EFA14374.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 210 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY++ SE L + A G + D+L ++ LTERE LQ Sbjct: 103 DGYLLKDSEPEQLLEHIRAAAEGQNVISDAVADYLSSRSEQHDPFAELTERELDVLQEVA 162 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G +++++A +L +S TV ++ + KLD +R+ A Sbjct: 163 RGMSNKQVAAQLHISEETVKVHIRNMLRKLDVRSRVAA 200 >gi|254228707|ref|ZP_04922130.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262396571|ref|YP_003288424.1| transcriptional regulator VpsT [Vibrio sp. Ex25] gi|151938654|gb|EDN57489.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262340165|gb|ACY53959.1| transcriptional regulator VpsT [Vibrio sp. Ex25] Length = 210 Score = 40.8 bits (94), Expect = 0.14, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L++ +G ++ EIA+ L +S HT+ ++L + KL+ NR QA + A R Sbjct: 152 LTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATSWARR 208 >gi|329948190|ref|ZP_08295062.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328522923|gb|EGF50028.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 215 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 6/75 (8%) Query: 164 FKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 F +R + N LTERE +QL G ++ EIA L + TV ++L K+ Sbjct: 139 FARRQGRSENHEALGVLTEREREVIQLLASGMSNAEIAAALVVETSTVKSHLTRILPKIG 198 Query: 218 AVNRIQAIAKAIRFG 232 A +R+QA+ A R G Sbjct: 199 ARDRVQAVVWAYRNG 213 >gi|15890276|ref|NP_355948.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15158472|gb|AAK88733.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 492 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 38/66 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S++ ++LT+RE L L DG + +E++++L LS HT+ ++ S K+ R A+ Sbjct: 421 SASLKDLTDREEQILSLICDGSSDKEMSDRLNLSKHTIRNHIASLYGKIGVNRRTAAVIW 480 Query: 228 AIRFGY 233 A G+ Sbjct: 481 ARERGF 486 >gi|19553213|ref|NP_601215.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62390849|ref|YP_226251.1| response regulator [Corynebacterium glutamicum ATCC 13032] gi|21324779|dbj|BAB99402.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41326187|emb|CAF20350.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 210 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G ++ EI +KL L+ TV +++G KLD +R A+A+A + G Sbjct: 150 LSAREIEVLSLVAQGQSNREIGKKLFLTEATVKSHMGHVFNKLDVTSRTAAVAEARQRGI 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|326797312|ref|YP_004315132.1| LuxR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326548076|gb|ADZ93296.1| transcriptional regulator, LuxR family [Marinomonas mediterranea MMB-1] Length = 254 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H AC + +K SS LT RE L G T+ EI+ LG+S +TV ++ Sbjct: 178 HSACSAAS----RIQRKSSSPINVLTSREREVLNWISSGKTNGEISMILGISPNTVKNHV 233 Query: 210 GSATVKLDAVNRIQAIA 226 S KL+A NR+ A A Sbjct: 234 ASILGKLNAPNRLAATA 250 >gi|311896318|dbj|BAJ28726.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 241 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 47/83 (56%), Gaps = 5/83 (6%) Query: 153 CYQVITDFLELFKKRSS-----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 +++T+F + ++RS A LT+RE L+L G + EIA++L +S +TV Sbjct: 152 AAKLLTEFKSMIQRRSDDRELLPAPRLTDRELEVLKLVATGMNNREIAKELFISENTVKN 211 Query: 208 YLGSATVKLDAVNRIQAIAKAIR 230 ++ + KL +R++A+ A+R Sbjct: 212 HVRNILEKLQLHSRMEAVVYAMR 234 >gi|310287361|ref|YP_003938619.1| two component transcriptional regulator, LuxR family protein [Bifidobacterium bifidum S17] gi|309251297|gb|ADO53045.1| two component transcriptional regulator, LuxR family protein [Bifidobacterium bifidum S17] Length = 240 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F +L + A ++ RE L L G T IA++LG+ TV + S+ KL+A Sbjct: 159 FDQLAHETPKRADLVSNREVQVLDLMSRGLTDLSIAKRLGIKAATVRKHAQSSMQKLNAE 218 Query: 220 NRIQAIAK 227 NR+QA+ K Sbjct: 219 NRVQAVLK 226 >gi|291486493|dbj|BAI87568.1| hypothetical protein BSNT_05953 [Bacillus subtilis subsp. natto BEST195] Length = 218 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A T+RE LQ G +E+IAEKL +S TV ++ K +A +R QA+ AIR Sbjct: 154 AEPFTKRELEVLQQMAYGLRNEDIAEKLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIR 213 Query: 231 FGYI 234 G + Sbjct: 214 NGIV 217 >gi|291300164|ref|YP_003511442.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569384|gb|ADD42349.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 219 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE + L DG ++ +IA +L L V TV ++ + KL+ NR+QA A R G Sbjct: 152 TLTDRERAVLVHLADGLSNADIAARLYLGVGTVKDHVSAILAKLEVANRVQAALLAERAG 211 Query: 233 YI 234 + Sbjct: 212 LL 213 >gi|317129617|ref|YP_004095899.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474565|gb|ADU31168.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 207 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 12/102 (11%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFL-----ELFKKRSSAARN--LTERETSCL 182 Y++ TS ANE I+EA ++ + F ++F + S ++ LT RE L Sbjct: 101 SYILKTSS----ANE-IVEAIRKAHKGVPTFQGQVTQKMFHQMRSKPKHEELTNREREVL 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G G T+++IAE L + + TV ++ KL+ +R QA Sbjct: 156 ALIGQGKTNKDIAETLHIGIKTVKTHVSHILSKLEVEDRTQA 197 >gi|254387412|ref|ZP_05002655.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194346200|gb|EDX27166.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 201 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L A DG T ++A ++ LS TV +L S K NR++A+ A R G+ Sbjct: 141 LTARERDVLNAAADGATVADVAARVSLSESTVRNHLSSVIGKTGTRNRMEALRAARRQGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|325830372|ref|ZP_08163829.1| response regulator receiver domain protein [Eggerthella sp. HGA1] gi|325487839|gb|EGC90277.1| response regulator receiver domain protein [Eggerthella sp. HGA1] Length = 213 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 35/58 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE++ ++L +G ++EIA +L LS TV ++ + KLD NR Q + + R Sbjct: 154 GLTERESAIVELVAEGLDNKEIAARLYLSEGTVRNHISAILQKLDLKNRTQLVVRYYR 211 >gi|293374136|ref|ZP_06620470.1| transcriptional regulator, LuxR family [Turicibacter sanguinis PC909] gi|325837421|ref|ZP_08166403.1| spore germination protein GerE [Turicibacter sp. HGF1] gi|292647239|gb|EFF65215.1| transcriptional regulator, LuxR family [Turicibacter sanguinis PC909] gi|325490953|gb|EGC93251.1| spore germination protein GerE [Turicibacter sp. HGF1] Length = 70 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L T+ EIAE+L +S TV ++ + +KL+ R QAI + ++ G Sbjct: 8 LTKREQEIFNLLVRNMTTSEIAEELKISEKTVRNHISNVILKLNVKGRSQAIIELLKLGV 67 Query: 234 I 234 I Sbjct: 68 I 68 >gi|297195058|ref|ZP_06912456.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197721552|gb|EDY65460.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 223 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T+RE L L G G ++ EIA++L +S T A++G KL A +R+Q + A G Sbjct: 158 GVTDREREVLTLIGRGLSNGEIADRLCISPATAKAHVGRLFTKLAARDRVQLVIIAYELG 217 Query: 233 YI 234 + Sbjct: 218 LV 219 >gi|126650765|ref|ZP_01722981.1| two-component response regulator [Bacillus sp. B14905] gi|126592430|gb|EAZ86448.1| two-component response regulator [Bacillus sp. B14905] Length = 201 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LF K + L ERE + LQL +G T+ EI+++L L+ T+ YL + KL +R Sbjct: 133 LFMKEQNP---LNEREIAVLQLVKEGLTTHEISKQLFLTKGTIRNYLSTTIQKLQVESRQ 189 Query: 223 QAIAKAIRFGYI 234 QA A G++ Sbjct: 190 QAAQIASDKGWL 201 >gi|154707512|ref|YP_001424377.1| response regulator [Coxiella burnetii Dugway 5J108-111] gi|154356798|gb|ABS78260.1| response regulator [Coxiella burnetii Dugway 5J108-111] Length = 214 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 11/132 (8%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFK 165 +EG LLP + VR G++ +S+ L + G Y I + L L K Sbjct: 84 MEGDLLPMRLLEVGVR------GFITKSSDTTELEQAIRAVYKGQRYISSAIANRLALSK 137 Query: 166 KRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++A + L++RE L L G +E IA++L ++ TVN++ KL N + Sbjct: 138 TTTAATSPFKKLSDREMEVLLLLAKGKKAEVIAKQLHITGKTVNSHRYRIFEKLGVKNDV 197 Query: 223 QAIAKAIRFGYI 234 + I A+++G + Sbjct: 198 ELIKLAVQYGLV 209 >gi|87309029|ref|ZP_01091167.1| two-component system response regulator-like protein (Nar family protein) [Blastopirellula marina DSM 3645] gi|87288372|gb|EAQ80268.1| two-component system response regulator-like protein (Nar family protein) [Blastopirellula marina DSM 3645] Length = 220 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 34/64 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S LT RE + G G TS EIA +L LSVHTV+ + K+ A + + I + Sbjct: 152 SDPINRLTNREREIFTMIGHGQTSAEIASQLNLSVHTVDTHRERLCRKISAKSSAELIRR 211 Query: 228 AIRF 231 A+++ Sbjct: 212 AMQW 215 >gi|324998336|ref|ZP_08119448.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1] Length = 224 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 10/90 (11%) Query: 150 HGACYQVITDFLELFKKRSSA-------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 H +VIT+F ++R + LT RE+ ++L G ++ EIA++L + + Sbjct: 128 HAVTRRVITEFA---RRRPAPDELPPVPVTPLTPRESEIVRLLARGMSNAEIADELVVEL 184 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 TV ++LG A K+ A +R+Q + A R G Sbjct: 185 STVKSHLGRAMAKIGARDRVQTVVWAYRSG 214 >gi|256396097|ref|YP_003117661.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362323|gb|ACU75820.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 339 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 28/46 (60%) Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +L GYT E +A +LG+SV T ++ + LDAV+R QA +A Sbjct: 285 KLMAQGYTDEAVARRLGMSVRTCRRHIAALMGSLDAVSRFQAGVRA 330 >gi|167566223|ref|ZP_02359139.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia oklahomensis EO147] gi|167573334|ref|ZP_02366208.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia oklahomensis C6786] Length = 230 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE CL G +S IA L +S +TV+ ++ +A KL+ +R A KA R G Sbjct: 167 HLTDREQICLTWVARGKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQG 226 Query: 233 YI 234 I Sbjct: 227 LI 228 >gi|145588751|ref|YP_001155348.1| two component LuxR family transcriptional regulator [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047157|gb|ABP33784.1| two component transcriptional regulator, LuxR family [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 197 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 1/81 (1%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 YQ + D + L + + LT+R+ L +G +++ IA L +S TV +LG Sbjct: 118 YQSLCDLMGLNPDEAELTQ-LTDRQKEILAHISNGDSNKMIAYSLNISEQTVKVHLGEIF 176 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 K+ NR QA+ KA G++ Sbjct: 177 KKIKVFNRTQAVIKAKENGWV 197 >gi|328886584|emb|CCA59823.1| hypothetical protein SVEN_6537 [Streptomyces venezuelae ATCC 10712] Length = 967 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LTE E +L G G +++E A KL LSV TV A L KLD +R Q +A A+ Sbjct: 907 ALSTLTEAELRLARLVGQGASNQEAAAKLYLSVKTVEARLTRIYQKLDVRSRAQ-LATAL 965 Query: 230 R 230 R Sbjct: 966 R 966 >gi|329117459|ref|ZP_08246176.1| response regulator receiver domain protein [Streptococcus parauberis NCFD 2020] gi|326907864|gb|EGE54778.1| response regulator receiver domain protein [Streptococcus parauberis NCFD 2020] Length = 213 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS + N + A G A + ++ K LT RE L L Sbjct: 101 KGYMLKTSSAAEILNAIKKVAKGQLAIETEVDKKIKEHDKNPELHEELTAREFDILYLLA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 GY ++ IA++L +S+ TV ++ + KLD +R QA+ A + Sbjct: 161 KGYDNQTIADELFISLKTVKTHVSNILSKLDVDDRTQAVVYAFQ 204 >gi|323357983|ref|YP_004224379.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323274354|dbj|BAJ74499.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 201 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L A DG + +IA + LS TV +L SA K NR A+ A+ G+ Sbjct: 141 LTERETDVLSAARDGGSIADIARTVHLSEGTVKNHLSSAIGKTGGRNRADAVRVAVERGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|163749108|ref|ZP_02156358.1| transcriptional regulator, LuxR family protein [Shewanella benthica KT99] gi|161331178|gb|EDQ02067.1| transcriptional regulator, LuxR family protein [Shewanella benthica KT99] Length = 221 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE + +Q+ G ++EIA +L +S HTV A++ S K + NR++ + A Sbjct: 156 LTKRERTIIQIVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210 >gi|84495104|ref|ZP_00994223.1| putative two component system response regulator [Janibacter sp. HTCC2649] gi|84384597|gb|EAQ00477.1| putative two component system response regulator [Janibacter sp. HTCC2649] Length = 224 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 13/125 (10%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRS-----SAARN 173 VR+G +G+++ +E L V A G +V + F RS AAR Sbjct: 96 VRIG--ASGFLVKDTEPTELLRGVRAVAGGDALLSPRVTRRLIGEFASRSRDTSMPAARE 153 Query: 174 L---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L T+RE + L G+G +++EIA +L +S T ++ A VKL A +R Q + A Sbjct: 154 LALLTDREREIVGLVGEGLSNDEIATRLVVSPATAKTHVSRAMVKLHARDRAQLVVLAYE 213 Query: 231 FGYIC 235 G + Sbjct: 214 SGLVT 218 >gi|323127832|gb|ADX25129.1| Two-component response regulator yvqC [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 213 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 148 LTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFR 204 >gi|313140077|ref|ZP_07802270.1| two component transcriptional regulator [Bifidobacterium bifidum NCIMB 41171] gi|313132587|gb|EFR50204.1| two component transcriptional regulator [Bifidobacterium bifidum NCIMB 41171] Length = 220 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F +L + A ++ RE L L G T IA++LG+ TV + S+ KL+A Sbjct: 139 FDQLAHETPKRADLVSNREVQVLDLMSRGLTDLSIAKRLGIKAATVRKHAQSSMQKLNAE 198 Query: 220 NRIQAIAK 227 NR+QA+ K Sbjct: 199 NRVQAVLK 206 >gi|302562273|ref|ZP_07314615.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] gi|302479891|gb|EFL42984.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] Length = 220 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L DG ++ EIA L +S TV ++ KL +R+QA+ A R G Sbjct: 159 LTPRELEVLRLIADGLSNSEIAAALLISQETVKTFVSRILAKLGLRDRVQAVVYAYRRG 217 >gi|302530143|ref|ZP_07282485.1| response regulator [Streptomyces sp. AA4] gi|302439038|gb|EFL10854.1| response regulator [Streptomyces sp. AA4] Length = 204 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L+L +GY +EEIA KL S TV L + NR A+A A+R G Sbjct: 143 GLASRECDVLRLVAEGYGTEEIATKLCYSERTVKNVLYGLMTRCGLNNRAHAVAYALRAG 202 Query: 233 YI 234 I Sbjct: 203 AI 204 >gi|251783082|ref|YP_002997385.1| putative two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391712|dbj|BAH82171.1| putative two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 215 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 150 LTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFR 206 >gi|257057781|ref|YP_003135613.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587653|gb|ACU98786.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 226 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 5/110 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLA 185 GYV+ +E +A V G + + L +R ++ + +LT RE L L Sbjct: 115 GYVLKDAEPEEVATAVRAAVKGEVH-LDAAVARLLARRMASPQVGVTSLTARERDILVLV 173 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G G ++ EIA++L +S T ++ + KL +R QA AIR G + Sbjct: 174 GQGLSNREIADRLVISERTARTHVSNVLSKLQLSSRTQAALLAIREGLVS 223 >gi|261406817|ref|YP_003243058.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283280|gb|ACX65251.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 225 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET LQL G + EI+ L +S T ++ KL A++R QA+ AIR Sbjct: 164 LTERETEVLQLLAYGKRNHEISAILCISEGTTKTHIHHIMQKLGALDRTQAVVTAIRMKL 223 Query: 234 I 234 + Sbjct: 224 V 224 >gi|163938916|ref|YP_001643800.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861113|gb|ABY42172.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 214 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 36/60 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A NLT++E L+ GY ++EIA +G++ TV AYL + KL +R +A+A +I Sbjct: 148 AENNLTDKELFVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSI 207 >gi|298251564|ref|ZP_06975367.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546156|gb|EFH80024.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1171 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S +LT+RE L+L G +++EIA+ L + + TV ++ + KL A +R QAI++ Sbjct: 1105 SVPGASLTQREQEVLRLLATGASNQEIAQTLVIELPTVKKHVSNLLGKLRASSRTQAISR 1164 Query: 228 A 228 A Sbjct: 1165 A 1165 >gi|120403820|ref|YP_953649.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119956638|gb|ABM13643.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 207 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 8/111 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-ACYQ------VITDFLELFKKRSSAARNLTERETSC 181 GY++ ++ L + V A G A + V+ +F + ++ S A LTERET Sbjct: 95 TGYLVKSASKQELGDAVRATAQGRAVFTPGLAGLVLGEFRRI-ERDSPAGPTLTERETEI 153 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ G T+++IA +L LS TV ++ + KL NR++ AI G Sbjct: 154 LRHVAKGLTAKQIASRLSLSHRTVENHVQATFRKLQIGNRVELARYAIEHG 204 >gi|330895505|gb|EGH27816.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str. M301072PT] gi|330981863|gb|EGH79966.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 77 Score = 40.8 bits (94), Expect = 0.15, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + S A+NLT+RE L+ + +G T+ +IA L L T++ ++ SA K+ N+ A Sbjct: 10 QPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAV 69 Query: 227 KA 228 +A Sbjct: 70 QA 71 >gi|319787738|ref|YP_004147213.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466250|gb|ADV27982.1| two component transcriptional regulator, LuxR family [Pseudoxanthomonas suwonensis 11-1] Length = 213 Score = 40.8 bits (94), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 153 LTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQL 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|227518222|ref|ZP_03948271.1| LuxR family response regulator [Enterococcus faecalis TX0104] gi|229548209|ref|ZP_04436934.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200] gi|293382160|ref|ZP_06628103.1| DNA-binding response regulator VraR [Enterococcus faecalis R712] gi|293388529|ref|ZP_06633033.1| DNA-binding response regulator VraR [Enterococcus faecalis S613] gi|307268836|ref|ZP_07550203.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307272676|ref|ZP_07553924.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307275104|ref|ZP_07556258.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307278542|ref|ZP_07559614.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307287394|ref|ZP_07567453.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307290831|ref|ZP_07570725.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312900387|ref|ZP_07759697.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312902923|ref|ZP_07762120.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312905744|ref|ZP_07764766.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312909060|ref|ZP_07767920.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312952200|ref|ZP_07771078.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|227074318|gb|EEI12281.1| LuxR family response regulator [Enterococcus faecalis TX0104] gi|229306688|gb|EEN72684.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200] gi|291080443|gb|EFE17807.1| DNA-binding response regulator VraR [Enterococcus faecalis R712] gi|291082133|gb|EFE19096.1| DNA-binding response regulator VraR [Enterococcus faecalis S613] gi|306498140|gb|EFM67663.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306501567|gb|EFM70863.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306504779|gb|EFM73977.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306508222|gb|EFM77338.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|306510671|gb|EFM79693.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306514840|gb|EFM83388.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310628223|gb|EFQ11506.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310629856|gb|EFQ13139.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310633695|gb|EFQ16978.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311290622|gb|EFQ69178.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311292477|gb|EFQ71033.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315028155|gb|EFT40087.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315032281|gb|EFT44213.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315036239|gb|EFT48171.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315145424|gb|EFT89440.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315148783|gb|EFT92799.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315151677|gb|EFT95693.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315154523|gb|EFT98539.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315156392|gb|EFU00409.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] gi|315160117|gb|EFU04134.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] gi|315163264|gb|EFU07281.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315165932|gb|EFU09949.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315169340|gb|EFU13357.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315171806|gb|EFU15823.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315174757|gb|EFU18774.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315576264|gb|EFU88455.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315578904|gb|EFU91095.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315582755|gb|EFU94946.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|329573313|gb|EGG54926.1| response regulator protein VraR [Enterococcus faecalis TX1467] Length = 206 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--RNLTERETSCLQL 184 GY++ TS +A+ + G +V +E K+ +LT RE L L Sbjct: 96 GYLLKTSTAHEIADAIRATYRGERVLEPEVTHKMMERLTKKQEPVLHEDLTNREHEILML 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G +++EIA++L +++ TV ++ + KLD +R QA A + G Sbjct: 156 IAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHG 203 >gi|222151857|ref|YP_002561017.1| two-component response regulator VraR [Macrococcus caseolyticus JCSC5402] gi|222120986|dbj|BAH18321.1| two-component response regulator VraR [Macrococcus caseolyticus JCSC5402] Length = 207 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L GY+++EIA+ +++ TV ++ + KL+ +R QA+ A + Sbjct: 146 LTEREKEILLLIAKGYSNQEIADASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDL 205 Query: 234 I 234 I Sbjct: 206 I 206 >gi|163753720|ref|ZP_02160843.1| Regulatory protein [Kordia algicida OT-1] gi|161325934|gb|EDP97260.1| Regulatory protein [Kordia algicida OT-1] Length = 146 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L++RE L L +G++++EIA L +S T+ ++ + KLD R QAI KA Sbjct: 84 LSKREYEVLCLLAEGHSNKEIASLLSVSESTIKTHVSNVYTKLDVKRRTQAIQKA 138 >gi|159900171|ref|YP_001546418.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893210|gb|ABX06290.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 221 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 7/69 (10%) Query: 169 SAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 SA RN LTERE L+L G+++ EIA+ L +S TV ++ + KL +R Sbjct: 140 SAPRNNDPDAEALTEREMDVLRLIARGHSNREIADSLIISEKTVKTHVSNILSKLHLADR 199 Query: 222 IQAIAKAIR 230 QA A+R Sbjct: 200 TQAAIYALR 208 >gi|52082354|ref|YP_081145.1| putative transcriptional regulator YdfI [Bacillus licheniformis ATCC 14580] gi|52787743|ref|YP_093572.1| YdfI [Bacillus licheniformis ATCC 14580] gi|319648225|ref|ZP_08002442.1| sensory transduction protein ydfI [Bacillus sp. BT1B_CT2] gi|52005565|gb|AAU25507.1| putative transcriptional regulator YdfI [Bacillus licheniformis ATCC 14580] gi|52350245|gb|AAU42879.1| YdfI [Bacillus licheniformis ATCC 14580] gi|317389860|gb|EFV70670.1| sensory transduction protein ydfI [Bacillus sp. BT1B_CT2] Length = 212 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LE KK+SS LTE+E L+ G S+ IA LG+S TV + L S KL A + Sbjct: 137 LERMKKQSSD-TQLTEKEVIVLKAIAKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANS 195 Query: 221 RIQAIAKAIRFGYIC 235 R +A+ A++ G + Sbjct: 196 RTEAVTIAMQRGVLT 210 >gi|325277764|ref|ZP_08143325.1| response regulator receiver protein [Pseudomonas sp. TJI-51] gi|324097102|gb|EGB95387.1| response regulator receiver protein [Pseudomonas sp. TJI-51] Length = 210 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE G ++ EIAE+LG+SV TV+ Y G +L A + + + AI G Sbjct: 140 SLTPRERDVFVPLAQGLSNREIAERLGISVKTVDLYRGRVMKRLQAASLAELVGMAIACG 199 Query: 233 YI 234 + Sbjct: 200 AV 201 >gi|271966260|ref|YP_003340456.1| ATPase-like protein [Streptosporangium roseum DSM 43021] gi|270509435|gb|ACZ87713.1| ATPase-like protein [Streptosporangium roseum DSM 43021] Length = 957 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 33/53 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A L+ R++ +LA G T++EIA ++ LS TV+ +LG A KL A +R + Sbjct: 894 AEGLSARQSQVARLAAKGLTNQEIARQMFLSPKTVDKHLGVAMRKLGARSRTE 946 >gi|118473454|ref|YP_884735.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118174741|gb|ABK75637.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length = 930 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ S+ LT +E +LA DG T++EI +L +S HTV +L VKL +R Q Sbjct: 864 KQPVSSGDELTAQEAQIARLAADGLTNQEIGSQLFISTHTVEWHLRKVFVKLGIGSRRQ 922 >gi|17233235|ref|NP_490325.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17135757|dbj|BAB78303.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 218 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ E + L G++++ IAE+L ++ TV ++ KLD +R+ A+ A + G Sbjct: 149 HLSNTEMQIISLMAAGFSNKHIAEQLFITQSTVKGHINKIFAKLDVADRVNALIVASKLG 208 Query: 233 YI 234 YI Sbjct: 209 YI 210 >gi|319939666|ref|ZP_08014025.1| response regulator [Streptococcus anginosus 1_2_62CV] gi|319811255|gb|EFW07561.1| response regulator [Streptococcus anginosus 1_2_62CV] Length = 210 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 +PV L GY++ TS + ++ A + + A ++ +E + +LT R Sbjct: 90 YPV-LDAGAKGYMLKTSSADDILRAVRKVAKGELAIETEVSQKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 E L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A Sbjct: 149 ERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYA 199 >gi|315030865|gb|EFT42797.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] Length = 206 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--RNLTERETSCLQL 184 GY++ TS +A+ + G +V +E K+ +LT RE L L Sbjct: 96 GYLLKTSTAHEIADAIRATYRGERVLEPEVTHKMMERLTKKQEPVLHEDLTNREHEILML 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G +++EIA++L +++ TV ++ + KLD +R QA A + G Sbjct: 156 IAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHG 203 >gi|299538340|ref|ZP_07051623.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298725927|gb|EFI66519.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 210 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L G ++EIA++L +++ TV ++ + KL+ +R QA+ A + G Sbjct: 148 QLTEREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNG 207 >gi|297162731|gb|ADI12443.1| regulatory protein LuxR [Streptomyces bingchenggensis BCW-1] Length = 865 Score = 40.8 bits (94), Expect = 0.16, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 1/58 (1%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LTE E L DG+++ A +LG+SV+TV +L + KLD +R+Q +A +R Sbjct: 794 SLTEAERRVALLIADGHSNRSAAAELGVSVNTVGTHLRAVFAKLDVQSRVQ-LANTLR 850 >gi|241764600|ref|ZP_04762616.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241365963|gb|EER60589.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 263 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +++ A L+ RE L++ GYTS EI +L +S TVN ++ + KL R QA Sbjct: 194 RRQPDDADRLSAREKEILRMVASGYTSTEIGSRLLISCMTVNTHIRNIYRKLQVRTRAQA 253 Query: 225 I 225 + Sbjct: 254 V 254 >gi|255608035|ref|XP_002538833.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus communis] gi|223510221|gb|EEF23550.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus communis] Length = 234 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 31/60 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE CL+ G T +IA LG+S T ++ A KL A R QA+A+ + G Sbjct: 173 TLTHRELECLRWVAAGKTDLQIARLLGVSQTTARTHIDQARRKLGARTRSQAVARLVLSG 232 >gi|78184554|ref|YP_376989.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78168848|gb|ABB25945.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 228 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G T +EIAE L +S T Y L+ NR+QA+ K +R G Sbjct: 166 LTPREYEVLDRLARGMTDKEIAEALVVSEQTSRTYTKRLLKTLEVNNRVQAVLKGMRCGM 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|329935654|ref|ZP_08285461.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304915|gb|EGG48786.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 224 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 33/64 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT+RET L L G ++ EIAE L L+ TV ++ KL +R QA+ A Sbjct: 158 KGLTQRETEVLTLVARGLSNSEIAETLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYES 217 Query: 232 GYIC 235 G + Sbjct: 218 GLVA 221 >gi|291446388|ref|ZP_06585778.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291349335|gb|EFE76239.1| transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 337 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T R +++ G T E +A KLGLS TV + T +L A +R QA A+R G++ Sbjct: 276 TGRHRELVRMLSGGLTDEAMARKLGLSERTVRRLVSELTERLGAASRFQAGVCAVRLGWL 335 >gi|239933481|ref|ZP_04690434.1| two component system DNA binding response regulator [Streptomyces ghanaensis ATCC 14672] gi|291441852|ref|ZP_06581242.1| two component system DNA binding response regulator [Streptomyces ghanaensis ATCC 14672] gi|291344747|gb|EFE71703.1| two component system DNA binding response regulator [Streptomyces ghanaensis ATCC 14672] Length = 211 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L L DG +++ + +L L+ TV ++L KL+ +R A+A A G Sbjct: 149 LTRRETEVLALVADGLSNQAVGNRLHLTEGTVKSHLARIYAKLNVDSRTAAVATATDLGL 208 Query: 234 I 234 I Sbjct: 209 I 209 >gi|256393536|ref|YP_003115100.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359762|gb|ACU73259.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 208 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE ++L +G ++EIA KL S T+ L +L+ NR +A A R G Sbjct: 144 GLSSREVDVIRLVSEGMETKEIAAKLCYSERTIKGVLHDVMTRLELRNRAHVVAHAAREG 203 Query: 233 YI 234 Y+ Sbjct: 204 YL 205 >gi|32967994|gb|AAP92509.1| transcriptional regulator [Streptomyces vinaceus] Length = 236 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L L GDG ++ EIA L +S TV +++ KL+ +R+ A R G Sbjct: 168 LSEREQQVLLLVGDGRSNREIARTLRVSEATVKSHVSRVLAKLELRDRVHAAQLVWRLG 226 >gi|332712354|ref|ZP_08432281.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332348828|gb|EGJ28441.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 243 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L +G ++ IAE+L ++V TV ++ + KL A +R QA +A+R G Sbjct: 182 LTERELEVLRLIVEGCSNALIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 241 Query: 234 I 234 + Sbjct: 242 V 242 >gi|328881828|emb|CCA55067.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 223 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 158 APQLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 217 Query: 231 FG 232 G Sbjct: 218 RG 219 >gi|315221997|ref|ZP_07863908.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315188963|gb|EFU22667.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 210 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 +PV L GY++ TS + ++ A + + A ++ +E + +LT R Sbjct: 90 YPV-LDAGAKGYMLKTSSADDILRAVRKVAKGELAIETEVSQKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 E L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A Sbjct: 149 ERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYA 199 >gi|260599500|ref|YP_003212071.1| transcriptional regulatory protein entR [Cronobacter turicensis z3032] gi|260218677|emb|CBA34025.1| Transcriptional regulatory protein entR [Cronobacter turicensis z3032] Length = 201 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 30/48 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE L+ +G ++EEIA K+G++V TV Y + +KL A NR Sbjct: 141 LTLREERILEWWSEGMSNEEIARKMGIAVKTVYTYKRNIRMKLGADNR 188 >gi|229155851|ref|ZP_04283952.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228627458|gb|EEK84184.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 211 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 38/68 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K++ S LT+RE LQ G +++EIA +L ++ TV ++ + KL+ +R QA Sbjct: 142 KEKESPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQA 201 Query: 225 IAKAIRFG 232 A++ G Sbjct: 202 ALYAVKHG 209 >gi|196229471|ref|ZP_03128336.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226703|gb|EDY21208.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 225 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 14/103 (13%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS------SAARNLTERETS 180 H+N + + +LA +V + +TD L KK S SA + LT+RE Sbjct: 111 HENSQTLLGAMQQVLAGKVYLSPQ------MTD--SLLKKMSGQDVSVSAMKRLTDRELE 162 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 QL G G T+ EIAE L L + TV+ Y KL N Q Sbjct: 163 VFQLIGAGKTTREIAEILNLGMTTVDTYRTRIKEKLGLRNGTQ 205 >gi|163740079|ref|ZP_02147482.1| response regulator [Phaeobacter gallaeciensis BS107] gi|161386628|gb|EDQ10994.1| response regulator [Phaeobacter gallaeciensis BS107] Length = 265 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 5/84 (5%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 AN +A GA + L +A L+ RE L L G TS+E A +S Sbjct: 171 ANPYEPDAEGAGFD-----RPLIAPPPAALTRLSPREREVLYLFSQGLTSKECAAVCKIS 225 Query: 202 VHTVNAYLGSATVKLDAVNRIQAI 225 HTV+ Y S KL+ NR++AI Sbjct: 226 PHTVSEYANSIYRKLNVRNRVEAI 249 >gi|116696235|ref|YP_841811.1| response regulator [Ralstonia eutropha H16] gi|113530734|emb|CAJ97081.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 224 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L GYT E A LGLSVHTV +++ + KL +R +A+ +A + G Sbjct: 161 LSVRENEILDLISRGYTYAETARYLGLSVHTVQSHIKNIYGKLAVRSRGEAVFEAAKLGL 220 Query: 234 I 234 + Sbjct: 221 L 221 >gi|91776759|ref|YP_546515.1| LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710746|gb|ABE50674.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 272 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE LQ G ++ EIA L +S TV ++ + KLD NR A AKA R G Sbjct: 210 ITPREKEILQWVHTGKSNWEIATILEISPLTVKNHMQNILRKLDVQNRSHAAAKAYRLGL 269 Query: 234 I 234 I Sbjct: 270 I 270 >gi|88861227|ref|ZP_01135860.1| putative transcriptional regulator, LuxR family protein [Pseudoalteromonas tunicata D2] gi|88816820|gb|EAR26642.1| putative transcriptional regulator, LuxR family protein [Pseudoalteromonas tunicata D2] Length = 218 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE + + L G ++EIA++L +S HTV +L SA K NRI+ ++ A Sbjct: 155 LTKREKAIIVLMSKGCKNKEIADELSISPHTVKTHLYSAFRKTKCRNRIELLSWA 209 >gi|315505229|ref|YP_004084116.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315411848|gb|ADU09965.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 212 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 34/73 (46%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + LT RET L L DG ++ I +L L+ TV ++L KL +R Sbjct: 138 RLMNRLRTPGTALTRRETEVLALVADGLSNHSIGTRLHLTEGTVKSHLARIYAKLGVDSR 197 Query: 222 IQAIAKAIRFGYI 234 A+A A G I Sbjct: 198 TAAVASATELGLI 210 >gi|239942915|ref|ZP_04694852.1| erythropoiesis-stimulating protein [Streptomyces roseosporus NRRL 15998] gi|239989375|ref|ZP_04710039.1| erythropoiesis-stimulating protein [Streptomyces roseosporus NRRL 11379] Length = 331 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T R +++ G T E +A KLGLS TV + T +L A +R QA A+R G++ Sbjct: 270 TGRHRELVRMLSGGLTDEAMARKLGLSERTVRRLVSELTERLGAASRFQAGVCAVRLGWL 329 >gi|126728912|ref|ZP_01744727.1| hypothetical protein SSE37_08793 [Sagittula stellata E-37] gi|126710842|gb|EBA09893.1| hypothetical protein SSE37_08793 [Sagittula stellata E-37] Length = 273 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 29/58 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 AA LT R+ CLQ DG T +I + G++ T+ +L A L QAIAK Sbjct: 200 AAARLTPRQRECLQWVADGKTQADITQITGMAASTIERHLSRARDHLRVETTAQAIAK 257 >gi|328951348|ref|YP_004368683.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328451672|gb|AEB12573.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 217 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 30/55 (54%) Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E LQL G +++EIA+ LGLS TV L KL A NR QA A+R G Sbjct: 156 ELEILQLLAQGCSNQEIADALGLSEKTVRNRLSEVFAKLGAQNRTQAALFAVRAG 210 >gi|294628886|ref|ZP_06707446.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14] gi|292832219|gb|EFF90568.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14] Length = 222 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 157 APRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 216 Query: 231 FG 232 G Sbjct: 217 RG 218 >gi|332666515|ref|YP_004449303.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332335329|gb|AEE52430.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 236 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 35/55 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L+LA G++++EIAE+L SV TV A+ + KL A N ++ KA Sbjct: 176 LTKREIQILKLAISGHSNKEIAEQLDKSVRTVEAHRFNLMKKLKAKNLMELSVKA 230 >gi|329939465|ref|ZP_08288801.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301694|gb|EGG45588.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 223 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 34/70 (48%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R LTERE + L G ++ EIA +L LS TV ++G KL +R+Q Sbjct: 148 RPRHEGLERLTEREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQV 207 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 208 VVLAYETGLV 217 >gi|297155349|gb|ADI05061.1| two-component system regulator [Streptomyces bingchenggensis BCW-1] Length = 237 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L GY + +A+ L +S TV +L A KL+ +R QA+A + FG Sbjct: 160 TLTMREAEVLKLVAKGYGNSTVAKILHISEATVKTHLNRAMGKLEISSRAQAVALSYEFG 219 Query: 233 YI 234 + Sbjct: 220 LV 221 >gi|157375088|ref|YP_001473688.1| putative nitrate/nitrite response regulator; NarL [Shewanella sediminis HAW-EB3] gi|157317462|gb|ABV36560.1| putative nitrate/nitrite response regulator; NarL [Shewanella sediminis HAW-EB3] Length = 213 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 6/112 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTER 177 + F+ +GY++ SE L ++ + G Q++ L K+ S +LT+R Sbjct: 96 IKFNTDGYLLKDSEPEELIEKINLAIQGEFVISNPLTQIMARSLRPNSKKVSPLESLTQR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 E L+L G ++++IA KLG++ TV ++ + KL +R++A A+ Sbjct: 156 ELQNLKLIAAGKSNKDIANKLGIAETTVKVHVKNLLKKLGLKSRVEAAVWAV 207 >gi|149916047|ref|ZP_01904570.1| response regulator receiver [Roseobacter sp. AzwK-3b] gi|149810121|gb|EDM69969.1| response regulator receiver [Roseobacter sp. AzwK-3b] Length = 123 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%) Query: 166 KRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KR A R LT RE+ ++ G T+ +I+ +L +S TV Y+GS K A NR++ Sbjct: 55 KRKEAERLRLTARESQVVRHLMQGMTNGQISVELNISEKTVKHYVGSLKDKFGAANRLEV 114 Query: 225 IAKAIRFG 232 + +A R G Sbjct: 115 VLEAQRLG 122 >gi|87161199|ref|YP_493917.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509499|ref|YP_001575158.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294848325|ref|ZP_06789072.1| response regulator [Staphylococcus aureus A9754] gi|87127173|gb|ABD21687.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160368308|gb|ABX29279.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294825125|gb|EFG41547.1| response regulator [Staphylococcus aureus A9754] gi|315198575|gb|EFU28904.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320143881|gb|EFW35653.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 200 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S+EI+EKL L+ TV Y KL A NR A KA G+ Sbjct: 140 LTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIIDKLFADNRFDAWKKANEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|150018604|ref|YP_001310858.1| two component LuxR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905069|gb|ABR35902.1| two component transcriptional regulator, LuxR family [Clostridium beijerinckii NCIMB 8052] Length = 220 Score = 40.8 bits (94), Expect = 0.16, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 30/50 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +NLTERE QL DGYT+ +IAE L +S TV Y+ + K + +R Sbjct: 159 KNLTEREIEICQLLSDGYTNSQIAEFLYISEGTVKNYISTIYDKTEIKDR 208 >gi|297156827|gb|ADI06539.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 222 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT+RE ++L G T++EIA +L LS T ++ KLD +R Q + A Sbjct: 153 RALTDREREVMRLVAAGLTNDEIAARLVLSPATAKTHVSRIMTKLDVRDRSQLVVLAYES 212 Query: 232 GYIC 235 G + Sbjct: 213 GMVS 216 >gi|302868391|ref|YP_003837028.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302571250|gb|ADL47452.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 212 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 34/72 (47%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + LT RET L L DG ++ I +L L+ TV ++L KL +R Sbjct: 139 LMNRLRTPGTALTRRETEVLALVADGLSNHSIGTRLHLTEGTVKSHLARIYAKLGVDSRT 198 Query: 223 QAIAKAIRFGYI 234 A+A A G I Sbjct: 199 AAVASATELGLI 210 >gi|254819243|ref|ZP_05224244.1| response regulator receiver domain-containing protein [Mycobacterium intracellulare ATCC 13950] Length = 211 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 9/113 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-ACYQ------VITDFLELFKKRSS--AARNLTERET 179 GY++ ++ LA V A G A + V+ ++ + + + A +LTERET Sbjct: 94 TGYLVKSASKSELAQAVTATAAGRAVFTPGLAGLVLGEYRRIAQSKDDGPARPSLTERET 153 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ G ++++IA KL LS TV ++ + KL NR++ AI G Sbjct: 154 EVLRYVAKGLSAKQIAMKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHG 206 >gi|224536867|ref|ZP_03677406.1| hypothetical protein BACCELL_01743 [Bacteroides cellulosilyticus DSM 14838] gi|224521533|gb|EEF90638.1| hypothetical protein BACCELL_01743 [Bacteroides cellulosilyticus DSM 14838] Length = 215 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L+ +G S EIA KL +SV+TV + +KL+A N + KAI+ G Sbjct: 153 LSKREQEVLKCISEGLKSNEIATKLYISVNTVEFHRKQIMLKLEAKNASDMLIKAIKSGV 212 Query: 234 I 234 + Sbjct: 213 L 213 >gi|221141983|ref|ZP_03566476.1| hypothetical protein SauraJ_10180 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302751153|gb|ADL65330.1| response regulator [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 200 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/63 (41%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT +E L+ G+G +S+EI+EKL L+ TV Y KL A NR A KA Sbjct: 138 KPLTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIIDKLFADNRFDAWKKANEK 197 Query: 232 GYI 234 G+I Sbjct: 198 GWI 200 >gi|218129935|ref|ZP_03458739.1| hypothetical protein BACEGG_01518 [Bacteroides eggerthii DSM 20697] gi|217988045|gb|EEC54370.1| hypothetical protein BACEGG_01518 [Bacteroides eggerthii DSM 20697] Length = 217 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Query: 166 KRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +RS R LT+RE L+ +G ++EIA+ L +S +TV+ + KLDA N Sbjct: 142 RRSDEGRREELTQRELDVLKCISEGKNTQEIAQDLCVSTNTVDTHRRHLLDKLDAKNVAD 201 Query: 224 AIAKAIRFGYI 234 I AI G I Sbjct: 202 LIMTAISRGII 212 >gi|297201227|ref|ZP_06918624.1| two-component system regulator [Streptomyces sviceus ATCC 29083] gi|197712910|gb|EDY56944.1| two-component system regulator [Streptomyces sviceus ATCC 29083] Length = 227 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 4/90 (4%) Query: 149 AHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 A G ++I +F L + + + LTERET L L G ++ EIA +L ++ T Sbjct: 133 APGITRRLIAEFSRLDHRPRAPLKTRVGELTERETEVLALIAQGLSNAEIAGRLVVAEQT 192 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++G VKL +R QA A G + Sbjct: 193 VKTHVGRILVKLGLRDRTQAAVFAYESGLV 222 >gi|194476794|ref|YP_002048973.1| possible transcriptional regulator [Paulinella chromatophora] gi|171191801|gb|ACB42763.1| possible transcriptional regulator [Paulinella chromatophora] Length = 90 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL+ RE ++L G T++EIA L +S TV+ ++ + K NRI+ + AI G Sbjct: 13 NLSGREVELIELLATGLTNQEIATHLMISKRTVDNHICNIFTKTGVNNRIKLLNWAIDSG 72 Query: 233 YIC 235 IC Sbjct: 73 RIC 75 >gi|260466536|ref|ZP_05812725.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029685|gb|EEW30972.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 517 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 39/66 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +++ +LT RE+ + L DG ++ IA +L LS HTV ++ + +KLD +R A Sbjct: 445 KVKAAEPASLTVRESEVVNLIADGKSNAAIAAELRLSEHTVKRHVANILLKLDLPSRAAA 504 Query: 225 IAKAIR 230 A ++R Sbjct: 505 AAFSVR 510 >gi|257876663|ref|ZP_05656316.1| regulatory protein [Enterococcus casseliflavus EC20] gi|325571030|ref|ZP_08146602.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|257810829|gb|EEV39649.1| regulatory protein [Enterococcus casseliflavus EC20] gi|325156115|gb|EGC68301.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 209 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Query: 155 QVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +V T ++ R+ +LT RE L L +G +++EIA+ L +++ TV ++ + Sbjct: 128 EVTTKMMDRLTNRTPILHEDLTNREQEVLLLIAEGKSNQEIADSLFITLKTVKTHVSNIL 187 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA A + G I Sbjct: 188 SKLEVEDRTQATIYAFKHGLI 208 >gi|229089048|ref|ZP_04220402.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-44] gi|228694270|gb|EEL47892.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-44] Length = 215 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLQLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|254382064|ref|ZP_04997426.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194340971|gb|EDX21937.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 222 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G G ++ EIA +L +S HTV +++G+ KL +RIQA+ A G Sbjct: 158 LTARERETLLHLGRGRSNAEIAAELTVSEHTVKSHVGNVLAKLGLRDRIQAVICAYETGL 217 Query: 234 I 234 I Sbjct: 218 I 218 >gi|311897623|dbj|BAJ30031.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 331 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A + +E + L++ GYT E IA+++G+S T + + +LDA +R +A A++ Sbjct: 264 ADGMPPQELAVLKMLSQGYTDEAIAKRMGVSPRTARRFAANLMERLDARSRFEAGVHAVQ 323 Query: 231 FGYI 234 G++ Sbjct: 324 DGWL 327 >gi|306832892|ref|ZP_07466025.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|304424967|gb|EFM28100.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] Length = 214 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 2/104 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS + N + A G A + ++ + +LT RE L+L Sbjct: 102 KGYMLKTSSAAEILNAIQKVARGELAIETEVDKKIKAHDMQPELHDDLTARERDILRLLA 161 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + Sbjct: 162 KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFK 205 >gi|298241309|ref|ZP_06965116.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554363|gb|EFH88227.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 220 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 31/60 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L T+ EI E+L LS TV ++ + KL R QAI +A G+ Sbjct: 159 LTEREQEILALIAQHLTNSEITERLALSPKTVRNHVSNIFSKLQVATRAQAIIRAREAGW 218 >gi|298248552|ref|ZP_06972357.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551211|gb|EFH85077.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 226 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 12/118 (10%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA---------RNLTE 176 GY++ S+ ++ + A G + I L+ +RS++A LTE Sbjct: 102 RGYLLKESDVEVVLQAIERAARGEMLVQPETIRRVLDYAARRSASALLPAGSIHEVQLTE 161 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G ++EI +LG++ TV +YL S KL+ +R A+ AI G + Sbjct: 162 REQEVLSALAAGERNKEIGARLGITRRTVESYLNSLYAKLNVDSRAAAVMVAIERGLL 219 >gi|156741561|ref|YP_001431690.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232889|gb|ABU57672.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 242 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 4/98 (4%) Query: 141 LANEVIIEAHGACYQVITDFLELF---KKRSSAA-RNLTERETSCLQLAGDGYTSEEIAE 196 L N+ +I +V+ F EL +R+SA LT RE L G +++EIA Sbjct: 127 LINDSVIAKPHVATRVLHQFRELAATEDERTSALFAPLTSREIEILDCIARGLSNKEIAT 186 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S TV ++ S KL +R A+ AI+ G+I Sbjct: 187 QLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRGWI 224 >gi|4928929|gb|AAD33777.1|AF139177_4 putative two component response regulator [Streptomyces lividans] Length = 199 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 29/52 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L LA G EIA +L LS TV Y+ +A K+ A NR+ AI Sbjct: 139 LTTRELGVLTLASQGAPIAEIAARLHLSRGTVRNYMATAVRKVGARNRVDAI 190 >gi|17231260|ref|NP_487808.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75907780|ref|YP_322076.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|3603297|gb|AAC82626.1| two-component response regulator OrrA [Nostoc sp. PCC 7120] gi|17132902|dbj|BAB75467.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75701505|gb|ABA21181.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 240 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G ++ +IAEKL ++V TV ++ + KL A +R QA +A+R G Sbjct: 179 LTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 238 Query: 234 IC 235 + Sbjct: 239 VA 240 >gi|302524687|ref|ZP_07277029.1| predicted protein [Streptomyces sp. AA4] gi|302433582|gb|EFL05398.1| predicted protein [Streptomyces sp. AA4] Length = 499 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 37/114 (32%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRS-SAARNLTERETSC 181 GYV+ S L V A G + +V+T + E RS A LT RE+ Sbjct: 122 GYVLKDSPAEDLIRAVRAVAMGEAWLDPAVTGRVLTTYREAASARSVMPAGVLTPRESDV 181 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G T EIA LG+S TV A+ KL +R AI A G + Sbjct: 182 LTAVARGLTDAEIAGTLGISTTTVEAHYERVCAKLRLRDRAAAIVYAFDHGLVA 235 >gi|258653745|ref|YP_003202901.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556970|gb|ACV79912.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 293 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT+ E + G T+ IAE+L LS HTV+A+L VKLD +R++ A++ Sbjct: 230 SLTDAERRVVSWVAGGMTNRRIAEELHLSRHTVDAHLKHVYVKLDIHSRVELTVLAMQ 287 >gi|300779182|ref|ZP_07089040.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] gi|300504692|gb|EFK35832.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] Length = 212 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE LQL G TS IAE+L LS TV+ + + K A N + I +A++ G Sbjct: 150 LTKREKQILQLVAQGKTSNMIAEELFLSPLTVDTHRKNLLQKFHAKNSTELINRAMQQGM 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|29833613|ref|NP_828247.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29610737|dbj|BAC74782.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 220 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G ++ EIA +L + TV +++ + KL A +R QA+ A G+ Sbjct: 157 LTDREGEVLRLMARGLSNAEIAGQLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESGF 216 Query: 234 IC 235 + Sbjct: 217 VA 218 >gi|30267736|gb|AAP21668.1| Shy21 [Streptomyces hygroscopicus subsp. yingchengensis] Length = 426 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Query: 167 RSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 RSS+A+ LT +E LQLAG G T+ +IA+ L +S TV +L A KLD +R Sbjct: 348 RSSSAKEGWHALTAQERQVLQLAGQGLTNRQIAQALFISPRTVGYHLYKAYPKLDIQSRR 407 Query: 223 Q 223 Q Sbjct: 408 Q 408 >gi|94984662|ref|YP_604026.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554943|gb|ABF44857.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 228 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 42/85 (49%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H A + + + + + L+ RE L++A G T++EIA L +S TV +L Sbjct: 139 HPAVARKVLERFSTHQTPTPPEDALSPRELEVLRVAATGRTNKEIARDLDISPRTVQVHL 198 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R +A+ I+ G+I Sbjct: 199 ANIFSKLGVGSRTEAVLYGIKRGWI 223 >gi|319785858|ref|YP_004145333.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317464370|gb|ADV26102.1| two component transcriptional regulator, LuxR family [Pseudoxanthomonas suwonensis 11-1] Length = 221 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT ++ LQ+ G+G +++IA LG+S T+ A++ + KL NR QA+ A R Sbjct: 147 RELTPQQFRVLQMLGEGRLNKQIAYDLGVSEATIKAHVTAVLRKLGVGNRTQAVLMAGRL 206 >gi|299536834|ref|ZP_07050141.1| two component transcriptional regulator, LuxR family protein [Lysinibacillus fusiformis ZC1] gi|298727658|gb|EFI68226.1| two component transcriptional regulator, LuxR family protein [Lysinibacillus fusiformis ZC1] Length = 201 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LF K + L ERE + LQL G T+ EI+++L L+ T+ YL ++ KL +R Sbjct: 133 LFMKEQNP---LNEREIAVLQLVKKGLTTNEISKQLFLTKGTIRNYLSTSIQKLQVESRQ 189 Query: 223 QAIAKAIRFGYI 234 QA A G++ Sbjct: 190 QAAQVAGEKGWL 201 >gi|302528623|ref|ZP_07280965.1| predicted protein [Streptomyces sp. AA4] gi|302437518|gb|EFL09334.1| predicted protein [Streptomyces sp. AA4] Length = 324 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 13/84 (15%) Query: 145 VIIEAHGAC--YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 V+IEA C +++ F + ++ LT RE +Q DG +++IA +L LSV Sbjct: 248 VVIEA---CTGKRLLPSFCDWYR--------LTPRERQVVQHLCDGAAAKQIARRLDLSV 296 Query: 203 HTVNAYLGSATVKLDAVNRIQAIA 226 HTVN +L + K A R + +A Sbjct: 297 HTVNEHLKAVFRKTAASGRDELVA 320 >gi|239981289|ref|ZP_04703813.1| two component system DNA binding response regulator [Streptomyces albus J1074] gi|291453147|ref|ZP_06592537.1| two component system DNA binding response regulator [Streptomyces albus J1074] gi|291356096|gb|EFE82998.1| two component system DNA binding response regulator [Streptomyces albus J1074] Length = 211 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 48/106 (45%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 GY++ + LA V A G L ++ + L+ RET L L +G Sbjct: 104 TGYLLKDAPPEELAEAVRTAAAGRTTLAPAVADRLLRRMRTPGTALSRRETEVLGLVAEG 163 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ I+E+L LS TV ++L KL +R A+A A+ G I Sbjct: 164 MSNLRISERLHLSQATVKSHLVHIYAKLGVDSRTAAVAAALERGLI 209 >gi|66047505|ref|YP_237346.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|289675883|ref|ZP_06496773.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5] gi|302188577|ref|ZP_07265250.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642] gi|63258212|gb|AAY39308.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|330938127|gb|EGH41849.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B] gi|330952935|gb|EGH53195.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] gi|330969528|gb|EGH69594.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 77 Score = 40.8 bits (94), Expect = 0.17, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + S A+NLT+RE L+ + +G T+ +IA L L T++ ++ SA K+ N+ A Sbjct: 10 QPSPAKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAV 69 Query: 227 KA 228 +A Sbjct: 70 QA 71 >gi|312137865|ref|YP_004005201.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|325673369|ref|ZP_08153061.1| response regulator [Rhodococcus equi ATCC 33707] gi|311887204|emb|CBH46513.1| LuxR family two component system response regulator [Rhodococcus equi 103S] gi|325555959|gb|EGD25629.1| response regulator [Rhodococcus equi ATCC 33707] Length = 212 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 35/69 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + RSS R LTERE L L G+ + I+ +L LS TV ++ + KL +R A Sbjct: 142 RARSSVFRELTEREHEVLDLIARGHDNATISRRLVLSPKTVRNHVSNVLTKLGVPDRSTA 201 Query: 225 IAKAIRFGY 233 I +A G Sbjct: 202 IVRAREAGM 210 >gi|302549529|ref|ZP_07301871.1| two component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467147|gb|EFL30240.1| two component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 221 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 G ++I +F K+ ++A +LTERE + L G G ++ EIA +L +S T + Sbjct: 130 GVTRRLIGEFAARSKEPAAADALASLTEREREVMALVGIGLSNGEIARRLVVSPLTAKTH 189 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + VKL+A +R Q + A G + Sbjct: 190 VSRTMVKLNARDRAQLVVLAYESGLV 215 >gi|302546104|ref|ZP_07298446.1| transcriptional regulatory protein DegU [Streptomyces hygroscopicus ATCC 53653] gi|302463722|gb|EFL26815.1| transcriptional regulatory protein DegU [Streptomyces himastatinicus ATCC 53653] Length = 228 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 163 APQLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 222 Query: 231 FG 232 G Sbjct: 223 AG 224 >gi|291299471|ref|YP_003510749.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568691|gb|ADD41656.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 216 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERET L G+G ++ EI ++L LS TV Y+ +KL NR QA Sbjct: 153 ELTERETEVLARLGEGLSNAEIGKRLYLSEATVKGYVSRLLLKLGCDNRTQA 204 >gi|123965433|ref|YP_001010514.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] gi|123199799|gb|ABM71407.1| two-component response regulator [Prochlorococcus marinus str. MIT 9515] Length = 242 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++TD L ++ S N T RE S LQL +G ++EIA KL S+ V Y+ +K Sbjct: 163 MLTDQNPLNQENSIDIPNFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIK 222 Query: 216 LDAVNRIQAIAKAI 229 +R + + A+ Sbjct: 223 TSTSSRTELVRYAL 236 >gi|91794822|ref|YP_564473.1| response regulator receiver [Shewanella denitrificans OS217] gi|91716824|gb|ABE56750.1| two component transcriptional regulator, LuxR family [Shewanella denitrificans OS217] Length = 207 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L ++E L+LA +G ++ +IA L + TV YL A KL+A NRI A A + G+ Sbjct: 147 LNDKERRALRLASEGKSTADIAASLFIVEGTVRNYLSEAIAKLNAANRIDAARIARQKGW 206 Query: 234 I 234 + Sbjct: 207 L 207 >gi|34498054|ref|NP_902269.1| LuxR family two-component response regulator [Chromobacterium violaceum ATCC 12472] gi|34103909|gb|AAQ60269.1| probable two-component response regulator, LuxR family [Chromobacterium violaceum ATCC 12472] Length = 217 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G + +IAE L +++ TV + + KLDA N ++ AIR G Sbjct: 157 LTMRENQVLKLIAEGMRNRDIAESLKITIKTVETHRLNLMRKLDAHNAVELTNWAIRLG 215 >gi|88860703|ref|ZP_01135340.1| DNA-binding response regulator, LuxR family protein [Pseudoalteromonas tunicata D2] gi|88817298|gb|EAR27116.1| DNA-binding response regulator, LuxR family protein [Pseudoalteromonas tunicata D2] Length = 198 Score = 40.8 bits (94), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+++E L+LA +G ++ +IA L ++ T YL A KL+A+NRI A A + G+ Sbjct: 138 LSDKERQALRLAAEGKSTHDIAAALYIAEGTARNYLSEAISKLNAMNRIDAARIARQKGW 197 Query: 234 I 234 + Sbjct: 198 L 198 >gi|332702953|ref|ZP_08423041.1| two component transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] gi|332553102|gb|EGJ50146.1| two component transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] Length = 225 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%) Query: 155 QVITDFLELFKKRS----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +V+ LE +R+ SA +LT+RE ++L DG+TS IA KL ++ TV + Sbjct: 135 KVVQKLLEFSTRRAQMTDSAYGSLTQREQQIMRLLADGWTSSAIAGKLFITRKTVENHRA 194 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N + A R G I Sbjct: 195 NIMSKLGLKNLADLVRYAARLGLI 218 >gi|282862547|ref|ZP_06271609.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562886|gb|EFB68426.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 218 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L ++ +I+ +L ++ TV +LG+ KL A +R++A+ KA+ G Sbjct: 154 LTRREMEILTLVSKAMSNRQISRRLTIAEGTVKRHLGTIFTKLGARSRLEAVNKAVSIGL 213 Query: 234 I 234 I Sbjct: 214 I 214 >gi|304381102|ref|ZP_07363756.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|269940821|emb|CBI49203.1| response regulator protein [Staphylococcus aureus subsp. aureus TW20] gi|304340411|gb|EFM06351.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|329314000|gb|AEB88413.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus T0131] Length = 200 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S+EI+EKL L+ TV Y KL A NR A KA G+ Sbjct: 140 LTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIIDKLFADNRFDAWKKANEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|311114585|ref|YP_003985806.1| two component system response regulator [Gardnerella vaginalis ATCC 14019] gi|310946079|gb|ADP38783.1| two component system response regulator [Gardnerella vaginalis ATCC 14019] Length = 243 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L G +++EIA+KL +S+ TV ++ K+DA +R+QA+ A G Sbjct: 182 DLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIDARDRVQAVVFAYENG 241 Query: 233 YI 234 + Sbjct: 242 LV 243 >gi|221200509|ref|ZP_03573551.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] gi|221206190|ref|ZP_03579204.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221174202|gb|EEE06635.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221179850|gb|EEE12255.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] Length = 209 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 37/68 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R +A LT R+ L+ +G ++ IA++LGLS TV A++ + L +NR QA A Sbjct: 142 RHAAGAPLTPRQIEVLRYLAEGVPNKVIADRLGLSEKTVKAHITAIFRTLHVLNRTQAAA 201 Query: 227 KAIRFGYI 234 + G I Sbjct: 202 AGRKAGLI 209 >gi|221126751|ref|XP_002164776.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 202 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 51/113 (45%), Gaps = 10/113 (8%) Query: 124 LGFHKNGYVI---FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---SAARNLTER 177 L GYV +SE L+ V A G Y + D LF S + LT Sbjct: 83 LALGATGYVPKNESSSELLLAIRRV---AQGRRY-ISNDIASLFVDDSVTEATEIKLTNS 138 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ET+ LQL G+G TS EIA KL +S TV + + KL N + A AIR Sbjct: 139 ETTILQLVGEGLTSREIALKLNISEGTVRKHRENLRSKLGIRNSAEMAAYAIR 191 >gi|159898252|ref|YP_001544499.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus ATCC 23779] gi|159891291|gb|ABX04371.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 870 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 35/55 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ERE L L G +++ IA++L LS++TV A++ + KL NR A+AKA Sbjct: 810 LSERELEVLGLIAAGLSNQAIADQLYLSLYTVKAHVRNIYGKLSVNNRTLAVAKA 864 >gi|57234205|ref|YP_181778.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224653|gb|AAW39710.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] Length = 232 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 7/107 (6%) Query: 135 TSEFLMLANEVIIEAHGACYQVITD-FLELFKKRSSAA------RNLTERETSCLQLAGD 187 TSE L+ + ++ H +++ +E + ++S+ A LT RE L L Sbjct: 107 TSEELVRSVREAVQGHRYLSSPLSEKAIEAYMEKSAEATSLDPYETLTIREREVLHLVAQ 166 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+T EIAE+L +S TV + + KLD N+ Q + A++ G I Sbjct: 167 GHTCAEIAERLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213 >gi|163943094|ref|YP_001647978.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229014574|ref|ZP_04171690.1| Two component transcriptional regulator, LuxR [Bacillus mycoides DSM 2048] gi|229065062|ref|ZP_04200357.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH603] gi|229136229|ref|ZP_04264978.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST196] gi|229170116|ref|ZP_04297805.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH621] gi|163865291|gb|ABY46350.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] gi|228613347|gb|EEK70483.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH621] gi|228647209|gb|EEL03295.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST196] gi|228716204|gb|EEL67920.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH603] gi|228746726|gb|EEL96613.1| Two component transcriptional regulator, LuxR [Bacillus mycoides DSM 2048] Length = 215 Score = 40.4 bits (93), Expect = 0.17, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHMSSILSKLHLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|317476845|ref|ZP_07936088.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316907020|gb|EFV28731.1| response regulator receiver domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 217 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Query: 166 KRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +RS R LT+RE L+ +G ++EIA+ L +S +TV+ + KLDA N Sbjct: 142 RRSDEGRREELTQRELDVLKCISEGKNTQEIAQDLCVSTNTVDTHRRHLLDKLDAKNVAD 201 Query: 224 AIAKAIRFGYI 234 I AI G I Sbjct: 202 LIMTAISRGII 212 >gi|289767748|ref|ZP_06527126.1| two-component system response regulator [Streptomyces lividans TK24] gi|289697947|gb|EFD65376.1| two-component system response regulator [Streptomyces lividans TK24] Length = 202 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 29/52 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L LA G EIA +L LS TV Y+ +A K+ A NR+ AI Sbjct: 142 LTTRELGVLTLASQGAPIAEIAARLHLSRGTVRNYMATAVRKVGARNRVDAI 193 >gi|271962124|ref|YP_003336320.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505299|gb|ACZ83577.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 213 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 39/76 (51%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 +V+T F + +A LTERE L+L G + EIA L LS TV ++ + Sbjct: 129 ARRVLTYFAGMPDPSRTAFPELTEREREVLELVAQGRGNNEIAGILFLSGKTVRNHVSNI 188 Query: 213 TVKLDAVNRIQAIAKA 228 +KL +R QAI +A Sbjct: 189 FMKLQVADRAQAIVRA 204 >gi|172040517|ref|YP_001800231.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171851821|emb|CAQ04797.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 234 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 39/74 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L + ++ LT RE L L G+G ++ +IA L L+ TV ++L KL A NR Sbjct: 161 KLMGQMTNPTEALTPRELEVLALVGEGKSNRDIARHLVLTEATVKSHLSHVFRKLGANNR 220 Query: 222 IQAIAKAIRFGYIC 235 A+A A + G I Sbjct: 221 TSAVAVARQRGIIA 234 >gi|160895826|ref|YP_001561408.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361410|gb|ABX33023.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 245 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L G+T +E+A +LG+S HTV ++ KL +R Q + A++ G+ Sbjct: 180 LSARELEVLRLVARGHTLDEVARQLGVSRHTVRTFVRRIYGKLQVSSRTQMMHVALQRGW 239 Query: 234 IC 235 + Sbjct: 240 LA 241 >gi|46447447|ref|YP_008812.1| hypothetical protein pc1813 [Candidatus Protochlamydia amoebophila UWE25] gi|46401088|emb|CAF24537.1| unknown protein [Candidatus Protochlamydia amoebophila UWE25] Length = 263 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE+ ++ +GY + IA KL LS TV Y+ + KL ++++ I KA Sbjct: 199 LTPRESDLVKFLSNGYPAHYIATKLELSKRTVENYIVTIKCKLGCTSKVELIQKA 253 >gi|28895408|ref|NP_801758.1| two-component response regulator [Streptococcus pyogenes SSI-1] gi|50914724|ref|YP_060696.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS10394] gi|71904035|ref|YP_280838.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|94988957|ref|YP_597058.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94990957|ref|YP_599057.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS10270] gi|94992850|ref|YP_600949.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS2096] gi|94994837|ref|YP_602935.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS10750] gi|28810654|dbj|BAC63591.1| putative two-component response regulator [Streptococcus pyogenes SSI-1] gi|50903798|gb|AAT87513.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS10394] gi|71803130|gb|AAX72483.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|94542465|gb|ABF32514.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94544465|gb|ABF34513.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS10270] gi|94546358|gb|ABF36405.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS2096] gi|94548345|gb|ABF38391.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS10750] Length = 215 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 150 LTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFR 206 >gi|317507118|ref|ZP_07964879.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254612|gb|EFV13921.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 214 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LTE+E L L G+G T+ +IAE++ L+ TV Y+ KL R QA A+R Sbjct: 154 SLTEQERVLLDLIGEGLTNRQIAERMFLAEKTVRNYVSKLLAKLGVERRTQAAVLAVR 211 >gi|307328222|ref|ZP_07607400.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886056|gb|EFN17064.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 232 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 33/69 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + S LTERET L + G ++EIA L + TV Y+ KL +R QA Sbjct: 142 REPSGPEQLTERETEVLTMLARGKANKEIAHDLRIGQQTVKTYVSHILTKLGVHSRTQAA 201 Query: 226 AKAIRFGYI 234 A++ G + Sbjct: 202 VYAVQSGLV 210 >gi|307328780|ref|ZP_07607951.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306885588|gb|EFN16603.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 217 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +T RE L L G G +++EIA++L L V TV ++ S K NRI+ A+R Sbjct: 152 APAITPREREVLGLLGVGLSNKEIADRLHLGVTTVKTHVASLMTKTGRDNRIRLAVLAVR 211 Query: 231 FG 232 G Sbjct: 212 AG 213 >gi|256783866|ref|ZP_05522297.1| two-component system response regulator [Streptomyces lividans TK24] Length = 194 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 29/52 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L LA G EIA +L LS TV Y+ +A K+ A NR+ AI Sbjct: 134 LTTRELGVLTLASQGAPIAEIAARLHLSRGTVRNYMATAVRKVGARNRVDAI 185 >gi|271968448|ref|YP_003342644.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270511623|gb|ACZ89901.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 215 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 155 QVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++IT F++ R+ +AR +LT RE +++ G ++ EI +L L+ TV A++ Sbjct: 132 RLITSFVDKAPSRAESARGRLASLTAREEDVIRVLARGLSNAEIGRELKLTEATVKAHVS 191 Query: 211 SATVKLDAVNRIQA 224 KL NR+QA Sbjct: 192 RLLAKLGLANRVQA 205 >gi|225020347|ref|ZP_03709539.1| hypothetical protein CORMATOL_00354 [Corynebacterium matruchotii ATCC 33806] gi|224946736|gb|EEG27945.1| hypothetical protein CORMATOL_00354 [Corynebacterium matruchotii ATCC 33806] Length = 223 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G +++EIA++L +S+HT ++G+ KL A +R Q + G Sbjct: 159 LTIREREVLRLVTKGLSNQEIADELVISIHTTKTHVGNIMTKLGAHDRAQLVIVGYESGL 218 Query: 234 IC 235 + Sbjct: 219 VA 220 >gi|189467258|ref|ZP_03016043.1| hypothetical protein BACINT_03644 [Bacteroides intestinalis DSM 17393] gi|189435522|gb|EDV04507.1| hypothetical protein BACINT_03644 [Bacteroides intestinalis DSM 17393] Length = 250 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 2/60 (3%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA--IAKAIRF 231 L+ERE LQL G S++IA+ L +S++TVN + + KL N I+A IAK + Sbjct: 190 LSEREKEILQLINKGKMSKDIAQTLSISINTVNRHRQNILEKLQVNNSIEACRIAKELHL 249 >gi|163743438|ref|ZP_02150817.1| response regulator [Phaeobacter gallaeciensis 2.10] gi|161383268|gb|EDQ07658.1| response regulator [Phaeobacter gallaeciensis 2.10] Length = 265 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 5/84 (5%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 AN +A GA + L +A L+ RE L L G TS+E A +S Sbjct: 171 ANPSEPDAEGAGFD-----RPLIAPPPTALTRLSPREREVLYLFSQGLTSKECAAVCKIS 225 Query: 202 VHTVNAYLGSATVKLDAVNRIQAI 225 HTV+ Y S KL+ NR++AI Sbjct: 226 PHTVSEYANSIYRKLNVRNRVEAI 249 >gi|116493461|ref|YP_805196.1| DNA-binding response regulator [Pediococcus pentosaceus ATCC 25745] gi|116103611|gb|ABJ68754.1| DNA-binding response regulator (Rec-wHTH domains) [Pediococcus pentosaceus ATCC 25745] Length = 191 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 38/67 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SS L+ERE S L+ A G ++ +A+KL LS TV YL + KL NR++AI Sbjct: 124 SSNKNPLSEREMSVLKAAVSGDATKVMAQKLFLSEGTVRNYLSAIFSKLGVHNRLEAIEV 183 Query: 228 AIRFGYI 234 A + +I Sbjct: 184 AKKNKWI 190 >gi|1429258|emb|CAA67717.1| unnamed protein product [Bacillus subtilis subsp. subtilis str. 168] Length = 218 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A T+RE LQ G +E+IAEKL +S TV ++ K +A +R QA+ AIR Sbjct: 154 AEPFTKRELEVLQQMAYGLRNEDIAEKLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIR 213 Query: 231 FGYI 234 G + Sbjct: 214 NGIV 217 >gi|116626889|ref|YP_829045.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116230051|gb|ABJ88760.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 215 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE QL +G +++EIA +L LS+HTV + KLD + + + A+R G Sbjct: 153 SLTGRERQVYQLLAEGNSNKEIANRLNLSLHTVETHRWHIMEKLDLHSTAELVLSAVRRG 212 Query: 233 YIC 235 + Sbjct: 213 LVT 215 >gi|260463507|ref|ZP_05811707.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259030832|gb|EEW32108.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 220 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 33/53 (62%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R LTER++ L+L +G +++E+A +L L TV ++ KL+A NR +A Sbjct: 153 RQLTERQSEILRLVAEGLSNKEVALRLDLQEKTVKHHMTGVLSKLNARNRTEA 205 >gi|229547584|ref|ZP_04436309.1| LuxR family response regulator [Enterococcus faecalis TX1322] gi|256852497|ref|ZP_05557873.1| LuxR family DNA-binding response regulator [Enterococcus faecalis T8] gi|229307274|gb|EEN73261.1| LuxR family response regulator [Enterococcus faecalis TX1322] gi|256712351|gb|EEU27383.1| LuxR family DNA-binding response regulator [Enterococcus faecalis T8] Length = 210 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--RNLTERETSCLQL 184 GY++ TS +A+ + G +V +E K+ +LT RE L L Sbjct: 100 GYLLKTSTAHEIADAIRATYRGERVLEPEVTHKMMERLTKKQEPVLHEDLTNREHEILML 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G +++EIA++L +++ TV ++ + KLD +R QA A + G Sbjct: 160 IAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHG 207 >gi|158338160|ref|YP_001519337.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308401|gb|ABW30018.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 238 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G ++ IA+KL +SV TV ++ S KL A +R QA +A+R G Sbjct: 177 LTDRELEVLELIVAGCSNAVIADKLYISVGTVKTHVRSILNKLCADDRTQAAVRALRSGL 236 Query: 234 I 234 + Sbjct: 237 V 237 >gi|148557613|ref|YP_001265195.1| putative PAS/PAC sensor protein [Sphingomonas wittichii RW1] gi|148502803|gb|ABQ71057.1| putative PAS/PAC sensor protein [Sphingomonas wittichii RW1] Length = 222 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 30/57 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L RE CL G T+ E A LGLS TV +L +A +L A N++ A AIR Sbjct: 162 LRSRERECLVWLSLGKTAWETAAILGLSQRTVEYHLNNAVARLGAANKVHAAVIAIR 218 >gi|29377375|ref|NP_816529.1| LuxR family DNA-binding response regulator [Enterococcus faecalis V583] gi|227554359|ref|ZP_03984406.1| LuxR family response regulator [Enterococcus faecalis HH22] gi|255970859|ref|ZP_05421445.1| regulatory protein [Enterococcus faecalis T1] gi|255974434|ref|ZP_05425020.1| regulatory protein [Enterococcus faecalis T2] gi|256618304|ref|ZP_05475150.1| regulatory protein [Enterococcus faecalis ATCC 4200] gi|256761234|ref|ZP_05501814.1| regulatory protein [Enterococcus faecalis T3] gi|256958147|ref|ZP_05562318.1| regulatory protein [Enterococcus faecalis DS5] gi|256960293|ref|ZP_05564464.1| regulatory protein [Enterococcus faecalis Merz96] gi|256962729|ref|ZP_05566900.1| regulatory protein [Enterococcus faecalis HIP11704] gi|257077420|ref|ZP_05571781.1| regulatory protein [Enterococcus faecalis JH1] gi|257080715|ref|ZP_05575076.1| LuxR family DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|257083389|ref|ZP_05577750.1| LuxR family DNA-binding response regulator [Enterococcus faecalis Fly1] gi|257088053|ref|ZP_05582414.1| regulatory protein [Enterococcus faecalis D6] gi|257091132|ref|ZP_05585493.1| LuxR family DNA-binding response regulator [Enterococcus faecalis CH188] gi|257417079|ref|ZP_05594073.1| regulatory protein [Enterococcus faecalis AR01/DG] gi|257417793|ref|ZP_05594787.1| luxR family DNA-binding response regulator [Enterococcus faecalis T11] gi|257420589|ref|ZP_05597579.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|294779660|ref|ZP_06745051.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300861047|ref|ZP_07107134.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|29344842|gb|AAO82599.1| DNA-binding response regulator, LuxR family [Enterococcus faecalis V583] gi|227176505|gb|EEI57477.1| LuxR family response regulator [Enterococcus faecalis HH22] gi|255961877|gb|EET94353.1| regulatory protein [Enterococcus faecalis T1] gi|255967306|gb|EET97928.1| regulatory protein [Enterococcus faecalis T2] gi|256597831|gb|EEU17007.1| regulatory protein [Enterococcus faecalis ATCC 4200] gi|256682485|gb|EEU22180.1| regulatory protein [Enterococcus faecalis T3] gi|256948643|gb|EEU65275.1| regulatory protein [Enterococcus faecalis DS5] gi|256950789|gb|EEU67421.1| regulatory protein [Enterococcus faecalis Merz96] gi|256953225|gb|EEU69857.1| regulatory protein [Enterococcus faecalis HIP11704] gi|256985450|gb|EEU72752.1| regulatory protein [Enterococcus faecalis JH1] gi|256988745|gb|EEU76047.1| LuxR family DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|256991419|gb|EEU78721.1| LuxR family DNA-binding response regulator [Enterococcus faecalis Fly1] gi|256996083|gb|EEU83385.1| regulatory protein [Enterococcus faecalis D6] gi|256999944|gb|EEU86464.1| LuxR family DNA-binding response regulator [Enterococcus faecalis CH188] gi|257158907|gb|EEU88867.1| regulatory protein [Enterococcus faecalis ARO1/DG] gi|257159621|gb|EEU89581.1| luxR family DNA-binding response regulator [Enterococcus faecalis T11] gi|257162413|gb|EEU92373.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|294453317|gb|EFG21728.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300850086|gb|EFK77836.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|323478876|gb|ADX78315.1| response regulator [Enterococcus faecalis 62] gi|327536064|gb|AEA94898.1| DNA-binding response regulator [Enterococcus faecalis OG1RF] Length = 210 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 5/108 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--RNLTERETSCLQL 184 GY++ TS +A+ + G +V +E K+ +LT RE L L Sbjct: 100 GYLLKTSTAHEIADAIRATYRGERVLEPEVTHKMMERLTKKQEPVLHEDLTNREHEILML 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G +++EIA++L +++ TV ++ + KLD +R QA A + G Sbjct: 160 IAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHG 207 >gi|16080942|ref|NP_391770.1| two-component response regulator YxjM [Bacillus subtilis subsp. subtilis str. 168] gi|221311860|ref|ZP_03593707.1| hypothetical protein Bsubs1_20996 [Bacillus subtilis subsp. subtilis str. 168] gi|221316184|ref|ZP_03597989.1| hypothetical protein BsubsN3_20907 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321096|ref|ZP_03602390.1| hypothetical protein BsubsJ_20855 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325380|ref|ZP_03606674.1| hypothetical protein BsubsS_21006 [Bacillus subtilis subsp. subtilis str. SMY] gi|20141933|sp|P55184|YXJL_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yxjL gi|1783236|dbj|BAA11713.1| yxjL [Bacillus subtilis] gi|2636426|emb|CAB15917.1| two-component response regulator [YxjM] [Bacillus subtilis subsp. subtilis str. 168] Length = 218 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A T+RE LQ G +E+IAEKL +S TV ++ K +A +R QA+ AIR Sbjct: 154 AEPFTKRELEVLQQMAYGLRNEDIAEKLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIR 213 Query: 231 FGYI 234 G + Sbjct: 214 NGIV 217 >gi|19746547|ref|NP_607683.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21910902|ref|NP_665170.1| putative two-component response regulator [Streptococcus pyogenes MGAS315] gi|56808638|ref|ZP_00366364.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Streptococcus pyogenes M49 591] gi|209559762|ref|YP_002286234.1| Putative two-component response regulator [Streptococcus pyogenes NZ131] gi|306826950|ref|ZP_07460250.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] gi|19748758|gb|AAL98182.1| putative two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21905108|gb|AAM79973.1| putative two-component response regulator [Streptococcus pyogenes MGAS315] gi|209540963|gb|ACI61539.1| Putative two-component response regulator [Streptococcus pyogenes NZ131] gi|304430968|gb|EFM33977.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] Length = 213 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 148 LTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFR 204 >gi|329934424|ref|ZP_08284503.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|329306020|gb|EGG49875.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] Length = 227 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A LT RE L+L G T+ EIA LG++V TV +++ + KL+ +R+QA A Sbjct: 153 AALETLTAREHDVLRLIASGLTNAEIAGHLGIAVGTVKSHVNAVLRKLELRDRVQATILA 212 Query: 229 IRFG 232 G Sbjct: 213 YDLG 216 >gi|290962906|ref|YP_003494088.1| response regulator [Streptomyces scabiei 87.22] gi|260652432|emb|CBG75565.1| putative response regulator [Streptomyces scabiei 87.22] Length = 219 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R +TERE L+L +G++S EIA L +SV TV + + KL +R+ AIR Sbjct: 155 RPITEREEEILKLVAEGHSSREIARLLVISVKTVERHRANLLHKLGLRDRLDLTRYAIRT 214 Query: 232 G 232 G Sbjct: 215 G 215 >gi|238064268|ref|ZP_04608977.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237886079|gb|EEP74907.1| LuxR family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 152 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A N+++RE + L+L DG + EIA++L S TV + + T + NR A+A A+R Sbjct: 89 ASNISDRERAVLRLLADGRETGEIAQELCYSTRTVTSVVHDITRRFRLRNRAHAVAFALR 148 Query: 231 FGYI 234 G + Sbjct: 149 AGML 152 >gi|228994130|ref|ZP_04154030.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] gi|228765582|gb|EEM14236.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] Length = 215 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILGKLNLSDRTQAALYAVKNGV 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|225874876|ref|YP_002756335.1| two-component system regulatory protein [Acidobacterium capsulatum ATCC 51196] gi|225794100|gb|ACO34190.1| two-component system regulatory protein [Acidobacterium capsulatum ATCC 51196] Length = 216 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 8/102 (7%) Query: 129 NGYV--IFTSEFLMLANEVIIEAH-GACYQVITDFLELF-----KKRSSAARNLTERETS 180 GYV T E L+ A EV++ A +V++ F++ K TERE Sbjct: 97 KGYVENQATPEQLLQAIEVVLSGSIWAPRRVLSKFVDRMLHFSAKPVRRHTSQFTEREQQ 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L+L ++ EIAE LG+ TV AY+ + K+ NR+ Sbjct: 157 VLRLLVAARSNREIAETLGIEARTVKAYVKTLMAKVGVDNRV 198 >gi|219848256|ref|YP_002462689.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542515|gb|ACL24253.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 236 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 49/98 (50%), Gaps = 4/98 (4%) Query: 141 LANEVIIEAHGACYQVITDFLEL--FKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAE 196 L N+ ++ +V+ F EL ++ SA+ LT RE L G +++EIA Sbjct: 129 LINDAVLARPNVAARVLHQFRELAATEEEDSASLFAPLTSREIEILDCIARGLSNKEIAN 188 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S TV ++ S KL +R A+ AI+ G+I Sbjct: 189 ELSISGQTVKNHITSILSKLQVNDRTMAVIVAIKKGWI 226 >gi|70729533|ref|YP_259271.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68343832|gb|AAY91438.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 211 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L GYT+ EIAE+LG+S+ T++ Y ++ A + + + AI G Sbjct: 144 SLTPREKDVLLPLVQGYTNREIAEQLGVSIKTIDLYRSRVMKRMQAEHLPELVGMAIAAG 203 Query: 233 YI 234 + Sbjct: 204 LV 205 >gi|56708828|ref|YP_164869.1| LuxR family transcriptional regulator [Ruegeria pomeroyi DSS-3] gi|56680513|gb|AAV97178.1| transcriptional regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 391 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 35/56 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +L+E E + +L +G T+++IAE+ G S+ T+N+ + S K + NR QAI A Sbjct: 325 DLSEAECAVFELMAEGKTNKQIAEERGRSLDTINSQVKSILSKSNCDNRTQAIRMA 380 >gi|329940650|ref|ZP_08289931.1| response regulator [Streptomyces griseoaurantiacus M045] gi|329300711|gb|EGG44608.1| response regulator [Streptomyces griseoaurantiacus M045] Length = 287 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L G T+ +AE+LG+ TV AYL SA KL A R +A+ A + G Sbjct: 225 GLSPREVDVLAWVAVGATNAGVAERLGVRPETVKAYLRSAMRKLGARTRGEAVVAARQAG 284 Query: 233 YI 234 + Sbjct: 285 AL 286 >gi|293604654|ref|ZP_06687055.1| LuxR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gi|292816941|gb|EFF76021.1| LuxR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 218 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 8/108 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN-----LT 175 LG +GY + L+ + + G + ++ L+L +R+ + + LT Sbjct: 91 LGAGAHGYCHSYAPAAALSQALEVVLSGGIWMGRSLVARLLKLVTERAQDSHSWDNGVLT 150 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ERE + + A G + +IAE LG++ TV A+L + KL +R+Q Sbjct: 151 EREITVARYAASGQANAQIAEALGITERTVKAHLSAVFEKLGVSDRLQ 198 >gi|284043929|ref|YP_003394269.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948150|gb|ADB50894.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 221 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G T+ EIA L ++ TV ++GS KLD +R AI A G Sbjct: 154 LTEREHDVLRLMARGATNAEIAATLFVAEATVKTHVGSIFSKLDVRDRAAAIVYAYDHGV 213 Query: 234 IC 235 I Sbjct: 214 IA 215 >gi|269126698|ref|YP_003300068.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311656|gb|ACY98030.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 229 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%) Query: 165 KKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++R+ AA + L+ E + L G G ++ EI +L +SV TV AY+ KLD NR+Q Sbjct: 152 RERARAALQRLSPGERAVALLIGQGRSNGEIGRELSMSVATVKAYVSRVLTKLDLNNRVQ 211 >gi|240172696|ref|ZP_04751355.1| two component LuxR family transcriptional regulator [Mycobacterium kansasii ATCC 12478] Length = 215 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 4/106 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL--ELFKKRSSAARNLTERETSCLQL 184 +G++ S+ + N V+ A GA Y I L E+ ++ A LTERE + + Sbjct: 105 SGFLTKESDSDEIVNAVVRCAEGASYLPAGIAGGLAGEVTRRGRGATTLLTEREAQVITM 164 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 DG + +IA +L L+ T+ ++ S KL +R A+A+A+R Sbjct: 165 MADGLSVPQIASRLHLARSTIKTHVHSLYEKLGVSDRGAAVAEAMR 210 >gi|229000199|ref|ZP_04159768.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] gi|229007721|ref|ZP_04165313.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228753589|gb|EEM03035.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228759531|gb|EEM08508.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] Length = 215 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILGKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|256376371|ref|YP_003100031.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920674|gb|ACU36185.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 956 Score = 40.4 bits (93), Expect = 0.18, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +L+ RE +L +G T+ EIAE+L LS TV A+L KL +R+ + + Sbjct: 897 SLSGREREVARLVSEGLTNREIAERLSLSAKTVEAHLARVFTKLGVRSRVGVVQR 951 >gi|32141311|ref|NP_733711.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|432994|gb|AAA21390.1| potential response regulator for aerial mycelium production [Streptomyces coelicolor A3(2)] gi|24413915|emb|CAD55386.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 202 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/52 (46%), Positives = 29/52 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L LA G EIA +L LS TV Y+ +A K+ A NR+ AI Sbjct: 142 LTTRELGVLTLASQGAPIAEIAARLHLSRGTVRNYMATAVRKVGARNRVDAI 193 >gi|269963001|ref|ZP_06177338.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832244|gb|EEZ86366.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 217 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G ++ +IA+ L +S HTV ++L S KL+ NR+QA+A A R Sbjct: 158 LTRREMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAVAWAKR 214 >gi|253316462|ref|ZP_04839675.1| hypothetical protein SauraC_10021 [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 200 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S+EI+EKL L+ TV Y KL A NR A KA G+ Sbjct: 140 LTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIIDKLFADNRFDAWKKANEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|56962495|ref|YP_174221.1| two-component response regulator of nitrate reduction [Bacillus clausii KSM-K16] gi|56908733|dbj|BAD63260.1| two-component response regulator of nitrate reduction [Bacillus clausii KSM-K16] Length = 215 Score = 40.4 bits (93), Expect = 0.18, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 5/74 (6%) Query: 162 ELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 E KK S A L++RE L L G+ ++EIAEKL +SV TV A+ KL Sbjct: 136 EFIKKDSERAEQDLFNGLSQREVEILPLIAKGFGNKEIAEKLYVSVKTVEAHKAKIMEKL 195 Query: 217 DAVNRIQAIAKAIR 230 + +R + + A++ Sbjct: 196 NLKSRPELVEYALK 209 >gi|330468676|ref|YP_004406419.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811647|gb|AEB45819.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 227 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L G + EIAE++ ++ TV ++G KL +R+QA+ A G Sbjct: 156 QLTEREREILLLVAQGLANAEIAERVHVAEATVKTHVGRILAKLQLRDRVQAVVLAYESG 215 Query: 233 YIC 235 + Sbjct: 216 LVV 218 >gi|307327120|ref|ZP_07606309.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887201|gb|EFN18198.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 236 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ EIA +L +S HTV ++G+ KL +RIQA+ A G Sbjct: 154 LTARERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETGL 213 Query: 234 I 234 I Sbjct: 214 I 214 >gi|296448320|ref|ZP_06890211.1| transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] gi|296254166|gb|EFH01302.1| transcriptional regulator, LuxR family [Methylosinus trichosporium OB3b] Length = 254 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT R+ L+ G T+ EI+ LG+SV V ++ T KL NR QA+A+A Sbjct: 194 LTPRQIEILEWLRQGKTNWEISVILGMSVDNVKYHVKQITRKLQVANRTQAVAEA 248 >gi|305679871|ref|ZP_07402681.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|305660491|gb|EFM49988.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 223 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G +++EIA++L +S+HT ++G+ KL A +R Q + G Sbjct: 159 LTIREREVLRLVTKGLSNQEIADELVISIHTTKTHVGNIMTKLGAHDRAQLVIVGYESGL 218 Query: 234 IC 235 + Sbjct: 219 VA 220 >gi|91790738|ref|YP_551689.1| LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91700618|gb|ABE46791.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 231 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 8/135 (5%) Query: 105 SVRLEGGLLPF--AGIAFPVRLGFHKNG---YVIFTSEFLMLANEVIIEAHGACYQVITD 159 + R E L+P+ AG VR+G G +F + + L+ V+ E ++ Sbjct: 100 ATRNEPWLVPWVEAGCLGIVRVGMEMPGDKQIEVFAASWNKLSRPVVAEF---VLDLVAV 156 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + ++ + LT ++ L L+ G ++ E A LG++ TVN +L + K Sbjct: 157 WPQIKRYVLPPLSGLTAQQVKVLNLSLHGLSARECAASLGVTERTVNFHLATIQEKFGTQ 216 Query: 220 NRIQAIAKAIRFGYI 234 N+ ++I+KAI G I Sbjct: 217 NKQESISKAIWLGAI 231 >gi|322689424|ref|YP_004209158.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|320460760|dbj|BAJ71380.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 241 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 7/78 (8%) Query: 152 ACYQVITDFLELFKKRS--SAARNL----TERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A + + D L + + RS AR L +RE + LA +GYT+ EIA ++ +S T Sbjct: 151 ASQKQLIDDLSVTRPRSRRDEARALLDALPDREREAVMLAAEGYTNAEIASRMFISERTA 210 Query: 206 NAYLGSATVKLDAVNRIQ 223 +L SA KLD + R+Q Sbjct: 211 KVHLSSAANKLD-MGRVQ 227 >gi|294812452|ref|ZP_06771095.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441089|ref|ZP_08215823.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325051|gb|EFG06694.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 236 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 32/54 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT RET L+L G ++ EIAE+L ++ TV ++G KL +R QA+ Sbjct: 169 KELTPRETEVLELIAQGLSNLEIAERLVVAEQTVKTHIGRILAKLRLRDRAQAV 222 >gi|293401509|ref|ZP_06645652.1| transcriptional regulator DegU [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305147|gb|EFE46393.1| transcriptional regulator DegU [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 83 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L Y++ EIA+++G+S TV ++ + +KL R QA+ + ++ G Sbjct: 21 LTPREKEVFELLIANYSTREIAKRMGISDKTVRNHISNVMLKLGVKGRAQAVVELLKLG 79 >gi|228955660|ref|ZP_04117658.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072878|ref|ZP_04206076.1| Two component transcriptional regulator, LuxR [Bacillus cereus F65185] gi|229082623|ref|ZP_04215086.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock4-2] gi|229153573|ref|ZP_04281751.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1550] gi|228630177|gb|EEK86828.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1550] gi|228701055|gb|EEL53578.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock4-2] gi|228710221|gb|EEL62197.1| Two component transcriptional regulator, LuxR [Bacillus cereus F65185] gi|228804029|gb|EEM50650.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 215 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++E+A L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEVASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|254393534|ref|ZP_05008669.1| luxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] gi|294811039|ref|ZP_06769682.1| LuxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] gi|326439619|ref|ZP_08214353.1| luxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] gi|197707156|gb|EDY52968.1| luxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] gi|294323638|gb|EFG05281.1| LuxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L+L G+G T+ +I +L L+ TV ++ KL RIQA A +F Sbjct: 163 GLTEREREILELIGEGLTNRQIGARLYLAEKTVKNHISRLLAKLGVERRIQAAVLATQF 221 >gi|78185167|ref|YP_377602.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78169461|gb|ABB26558.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 227 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 39/66 (59%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +S A L++RE+ L+ G +++E+AE L +S T+ +++ + KL +R QA+ Sbjct: 161 KSIALAGLSDRESEVLEALCQGMSNKEMAEVLFVSPETIKSHVSTVIGKLGVKDRTQAVI 220 Query: 227 KAIRFG 232 AIR G Sbjct: 221 SAIRAG 226 >gi|15924312|ref|NP_371846.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15926903|ref|NP_374436.1| hypothetical protein SA1159 [Staphylococcus aureus subsp. aureus N315] gi|21282938|ref|NP_646026.1| hypothetical protein MW1209 [Staphylococcus aureus subsp. aureus MW2] gi|49486166|ref|YP_043387.1| response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57650324|ref|YP_186208.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus COL] gi|88195044|ref|YP_499844.1| hypothetical protein SAOUHSC_01314 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267810|ref|YP_001246753.1| two component LuxR family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150393872|ref|YP_001316547.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151221446|ref|YP_001332268.1| two-component response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|156979642|ref|YP_001441901.1| hypothetical protein SAHV_1311 [Staphylococcus aureus subsp. aureus Mu3] gi|253731954|ref|ZP_04866119.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733432|ref|ZP_04867597.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255006110|ref|ZP_05144711.2| hypothetical protein SauraM_06565 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795621|ref|ZP_05644600.1| response regulator protein [Staphylococcus aureus A9781] gi|258416023|ref|ZP_05682291.1| two-component system response regulator [Staphylococcus aureus A9763] gi|258420460|ref|ZP_05683402.1| response regulator receiver [Staphylococcus aureus A9719] gi|258434764|ref|ZP_05688838.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|258444660|ref|ZP_05692989.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|258447506|ref|ZP_05695650.1| two-component system response regulator [Staphylococcus aureus A6300] gi|258449347|ref|ZP_05697450.1| two component transcriptional regulator [Staphylococcus aureus A6224] gi|258451721|ref|ZP_05699745.1| two component transcriptional regulator [Staphylococcus aureus A5948] gi|258454728|ref|ZP_05702692.1| two-component system response regulator [Staphylococcus aureus A5937] gi|262048198|ref|ZP_06021085.1| hypothetical protein SAD30_1974 [Staphylococcus aureus D30] gi|262051375|ref|ZP_06023598.1| hypothetical protein SA930_2097 [Staphylococcus aureus 930918-3] gi|269202943|ref|YP_003282212.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|282892812|ref|ZP_06301047.1| response regulator [Staphylococcus aureus A8117] gi|282920590|ref|ZP_06328311.1| response regulator [Staphylococcus aureus A9765] gi|282929137|ref|ZP_06336717.1| response regulator [Staphylococcus aureus A10102] gi|284024324|ref|ZP_06378722.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus 132] gi|295406263|ref|ZP_06816070.1| response regulator [Staphylococcus aureus A8819] gi|296275358|ref|ZP_06857865.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MR1] gi|297208024|ref|ZP_06924455.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244491|ref|ZP_06928374.1| response regulator [Staphylococcus aureus A8796] gi|300912108|ref|ZP_07129551.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|13701120|dbj|BAB42415.1| SA1159 [Staphylococcus aureus subsp. aureus N315] gi|14247093|dbj|BAB57484.1| similar to two-component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|21204377|dbj|BAB95074.1| MW1209 [Staphylococcus aureus subsp. aureus MW2] gi|49244609|emb|CAG43040.1| response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57284510|gb|AAW36604.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus COL] gi|87202602|gb|ABD30412.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740879|gb|ABQ49177.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JH9] gi|149946324|gb|ABR52260.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150374246|dbj|BAF67506.1| two-component response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|156721777|dbj|BAF78194.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|253724364|gb|EES93093.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728486|gb|EES97215.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257789593|gb|EEV27933.1| response regulator protein [Staphylococcus aureus A9781] gi|257839171|gb|EEV63647.1| two-component system response regulator [Staphylococcus aureus A9763] gi|257843408|gb|EEV67815.1| response regulator receiver [Staphylococcus aureus A9719] gi|257849125|gb|EEV73107.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|257850153|gb|EEV74106.1| conserved hypothetical protein [Staphylococcus aureus A8115] gi|257853697|gb|EEV76656.1| two-component system response regulator [Staphylococcus aureus A6300] gi|257857335|gb|EEV80233.1| two component transcriptional regulator [Staphylococcus aureus A6224] gi|257860552|gb|EEV83376.1| two component transcriptional regulator [Staphylococcus aureus A5948] gi|257863111|gb|EEV85875.1| two-component system response regulator [Staphylococcus aureus A5937] gi|259160750|gb|EEW45771.1| hypothetical protein SA930_2097 [Staphylococcus aureus 930918-3] gi|259163764|gb|EEW48319.1| hypothetical protein SAD30_1974 [Staphylococcus aureus D30] gi|262075233|gb|ACY11206.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|282589240|gb|EFB94335.1| response regulator [Staphylococcus aureus A10102] gi|282594252|gb|EFB99239.1| response regulator [Staphylococcus aureus A9765] gi|282764809|gb|EFC04934.1| response regulator [Staphylococcus aureus A8117] gi|285817001|gb|ADC37488.1| DNA-binding response regulator [Staphylococcus aureus 04-02981] gi|294968851|gb|EFG44873.1| response regulator [Staphylococcus aureus A8819] gi|296887267|gb|EFH26169.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178521|gb|EFH37767.1| response regulator [Staphylococcus aureus A8796] gi|300886354|gb|EFK81556.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|312829719|emb|CBX34561.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315131121|gb|EFT87105.1| hypothetical protein CGSSa03_06249 [Staphylococcus aureus subsp. aureus CGS03] gi|320140851|gb|EFW32698.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|329727328|gb|EGG63784.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus 21172] gi|329730892|gb|EGG67268.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus 21189] gi|329733681|gb|EGG70009.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus 21193] Length = 200 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S+EI+EKL L+ TV Y KL A NR A KA G+ Sbjct: 140 LTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIIDKLFADNRFDAWKKANEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|325971781|ref|YP_004247972.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy] gi|324027019|gb|ADY13778.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy] Length = 295 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 33/50 (66%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++TERE + +QL G T++EIA +LG+S +TVN ++ + K +RI Sbjct: 236 HITEREFAVIQLISKGLTNKEIASQLGISANTVNNHVANIYGKTQVRSRI 285 >gi|269795934|ref|YP_003315389.1| luxR family transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269098119|gb|ACZ22555.1| transcriptional regulator, luxR family [Sanguibacter keddieii DSM 10542] Length = 903 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LA G +S EIAE+L LSV TV+++L K NR + + A+R Sbjct: 845 LTRREQEIAGLAAGGLSSREIAERLVLSVRTVDSHLSRVFAKAGVKNR-RELGAALR 900 >gi|291298173|ref|YP_003509451.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567393|gb|ADD40358.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 220 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE + LA G +EEIAE+L +S T ++ A +KL +R Q + A G Sbjct: 154 LTNREREVVVLAAQGLNNEEIAERLVISPTTAKTHISRAMIKLACRDRTQLVVYAYESGL 213 Query: 234 IC 235 I Sbjct: 214 IT 215 >gi|182624556|ref|ZP_02952339.1| salavaricin two-component response regulator [Clostridium perfringens D str. JGS1721] gi|177910364|gb|EDT72745.1| salavaricin two-component response regulator [Clostridium perfringens D str. JGS1721] Length = 201 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L G G + IA+ + +S T+ ++ + KL+ + I+AI KA + GY Sbjct: 140 LTEREKEILSLLGKGERRKNIAKTIYISERTLTNHIQNILEKLEVDSTIKAIIKAQKLGY 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|168180051|ref|ZP_02614715.1| DNA-binding response regulator, LuxR family [Clostridium botulinum NCTC 2916] gi|182669120|gb|EDT81096.1| DNA-binding response regulator, LuxR family [Clostridium botulinum NCTC 2916] Length = 217 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 20/115 (17%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--------VITDFL-------ELFKKRS 168 L F +GY++ S +NE+I E AC + V + + EL Sbjct: 96 LKFGASGYLLKDS-----SNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKELNDDDI 150 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S NLTERE + ++ +G +++EIAEK+ LS T+ + + KLD +R Q Sbjct: 151 SLKYNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQ 205 >gi|153940488|ref|YP_001390741.1| LuxR family DNA-binding response regulator [Clostridium botulinum F str. Langeland] gi|152936384|gb|ABS41882.1| DNA-binding response regulator, LuxR family [Clostridium botulinum F str. Langeland] gi|295318814|gb|ADF99191.1| DNA-binding response regulator, LuxR family [Clostridium botulinum F str. 230613] Length = 217 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 20/115 (17%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--------VITDFL-------ELFKKRS 168 L F +GY++ S +NE+I E AC + V + + EL Sbjct: 96 LKFGASGYLLKDS-----SNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKELNDDDI 150 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S NLTERE + ++ +G +++EIAEK+ LS T+ + + KLD +R Q Sbjct: 151 SLKYNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQ 205 >gi|157371727|ref|YP_001479716.1| two component LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157323491|gb|ABV42588.1| two component transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 210 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY++ SE L + A G + D+L ++ LTERE LQ Sbjct: 103 DGYLLKDSEPEQLLEHIRAAAEGKNVISDAVADYLSSRSEQHDPFAELTERELDVLQEVA 162 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G +++++A +L +S TV ++ + KLD +R+ A Sbjct: 163 RGLSNKQVAAQLHISEETVKVHIRNMLRKLDVRSRVAA 200 >gi|21221817|ref|NP_627596.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|256787004|ref|ZP_05525435.1| two component system response regulator [Streptomyces lividans TK24] gi|289770897|ref|ZP_06530275.1| two component system response regulator [Streptomyces lividans TK24] gi|4585835|emb|CAB40929.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] gi|289701096|gb|EFD68525.1| two component system response regulator [Streptomyces lividans TK24] Length = 224 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 35/70 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R + LTERE + L G ++ EIA +L LS TV ++G KL +R+Q Sbjct: 148 EPRQKELQRLTEREREVMVLVAQGMSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQV 207 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 208 VVLAYETGLV 217 >gi|84502331|ref|ZP_01000479.1| two-component response regulator [Oceanicola batsensis HTCC2597] gi|84389691|gb|EAQ02410.1| two-component response regulator [Oceanicola batsensis HTCC2597] Length = 213 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G G + E+A +LG++V TV Y+ KL +R +A A R G Sbjct: 150 LTDREREVLGLIGRGLRNAEVAAELGIAVSTVAGYVKDTYRKLGISSRAEAAWHATRLG 208 >gi|333023954|ref|ZP_08452018.1| putative CitB protein [Streptomyces sp. Tu6071] gi|332743806|gb|EGJ74247.1| putative CitB protein [Streptomyces sp. Tu6071] Length = 77 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A LT R+T ++LA G T++E A +LG+S TV+ +L A ++ A + + Sbjct: 9 SDVAHALTPRQTEVVRLAALGLTAKETARRLGISKTTVDEHLTEARRRVGASTKSHLVGL 68 Query: 228 AIRFGYI 234 A+ G + Sbjct: 69 AVAAGIV 75 >gi|226308488|ref|YP_002768448.1| LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226187605|dbj|BAH35709.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 292 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + G + EIAE+L LSV T+ Y+ + KLD +R +A+ +A R G Sbjct: 231 LSPREREVMGYVALGLRNAEIAERLSLSVETIKTYMRNLMGKLDVRSRHEAVVEARRQGL 290 Query: 234 I 234 I Sbjct: 291 I 291 >gi|167035632|ref|YP_001670863.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166862120|gb|ABZ00528.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 235 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ERE L+ + G T+ ++A L LS TVN ++ S K +A N+ AIA A G+ Sbjct: 175 MSERELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRGW 234 Query: 234 I 234 I Sbjct: 235 I 235 >gi|90423532|ref|YP_531902.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90105546|gb|ABD87583.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 242 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE C++L G+ ++IA L LS + YL SA KL A QAIA A+ Sbjct: 180 LSKREKQCIELLAKGFLPKQIAALLDLSESAIRLYLCSARRKLQASTTSQAIAIALSLEL 239 Query: 234 I 234 I Sbjct: 240 I 240 >gi|282862196|ref|ZP_06271259.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563221|gb|EFB68760.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 233 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 168 APQLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 227 Query: 231 FG 232 G Sbjct: 228 TG 229 >gi|209518938|ref|ZP_03267749.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. H160] gi|209500661|gb|EEA00706.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. H160] Length = 913 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 39/69 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R + L+ RE+ + L G +++EIA LG++ TV +++ S +KL+ R A+ Sbjct: 842 QRDADREALSARESEIVGLIAQGQSNKEIARSLGIAPETVKSHVKSIFLKLEVDKRAHAV 901 Query: 226 AKAIRFGYI 234 ++A G + Sbjct: 902 SRAQALGLL 910 >gi|186681901|ref|YP_001865097.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464353|gb|ACC80154.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 240 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G ++ +IAEKL ++V TV ++ + KL A +R QA +A+R G Sbjct: 179 LTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 238 Query: 234 IC 235 + Sbjct: 239 VA 240 >gi|288960054|ref|YP_003450394.1| two-component response regulator [Azospirillum sp. B510] gi|288912362|dbj|BAI73850.1| two-component response regulator [Azospirillum sp. B510] Length = 310 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 30/60 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L +G + +I E LG+S TVN +L KL NR A A AIR Sbjct: 245 ALGLTAREAEVLLWIANGKPNRDIGEILGISPRTVNKHLEQVFAKLGVENRASAAALAIR 304 >gi|229488619|ref|ZP_04382485.1| response regulator receiver protein [Rhodococcus erythropolis SK121] gi|229324123|gb|EEN89878.1| response regulator receiver protein [Rhodococcus erythropolis SK121] Length = 288 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + G + EIAE+L LSV T+ Y+ + KLD +R +A+ +A R G Sbjct: 227 LSPREREVMGYVALGLRNAEIAERLSLSVETIKTYMRNLMGKLDVRSRHEAVVEARRQGL 286 Query: 234 I 234 I Sbjct: 287 I 287 >gi|226359781|ref|YP_002777559.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226238266|dbj|BAH48614.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 849 Score = 40.4 bits (93), Expect = 0.19, Method: Composition-based stats. Identities = 16/43 (37%), Positives = 29/43 (67%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +R++ + LT R+ + L G+T++EIAE+LG+S+ TV + Sbjct: 800 RRATETKPLTRRQREVVALVSQGFTNKEIAERLGVSIRTVEGH 842 >gi|119492940|ref|ZP_01623970.1| transcriptional regulatory protein [Lyngbya sp. PCC 8106] gi|119452866|gb|EAW34040.1| transcriptional regulatory protein [Lyngbya sp. PCC 8106] Length = 121 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 7/88 (7%) Query: 142 ANEVIIEAH--GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +NEVI E++ G Y +L + +S + L++RE +L +G ++ IA++LG Sbjct: 30 SNEVIFESNIDGTRY-----YLVRCQPKSDQSVQLSQREQEIAKLVAEGLPNKCIAKELG 84 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S TV+ YL KL+ NR AK Sbjct: 85 ISQWTVSTYLRRIFGKLNVTNRAAMTAK 112 >gi|89098238|ref|ZP_01171123.1| two-component response regulator involved in degradative enzyme [Bacillus sp. NRRL B-14911] gi|89087095|gb|EAR66211.1| two-component response regulator involved in degradative enzyme [Bacillus sp. NRRL B-14911] Length = 217 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 12/128 (9%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 L+ G+ G P L +NG + F E M + +I++ + D + F KR Sbjct: 98 LKKGVKGIVGYDSP--LDILRNG-IKFVKEGGMYFDAMIVKEY--------DIMPSFDKR 146 Query: 168 S-SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE QL T++EIAE L ++ TV+ ++ K + A+A Sbjct: 147 EMQQIPGLTRREWEIFQLTVKDMTNQEIAESLSINQSTVSVHIKGIVKKTGSKTIRGAVA 206 Query: 227 KAIRFGYI 234 K +R+G++ Sbjct: 207 KGLRYGWL 214 >gi|297622936|ref|YP_003704370.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164116|gb|ADI13827.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 478 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+L +G +EEIA LGLS +TV Y+ + K+ R +A+ A G Sbjct: 401 DLTARERQVLELIAEGQKNEEIALALGLSKNTVRNYVANLYAKIGVQGRAEAVIWARERG 460 Query: 233 YI 234 I Sbjct: 461 VI 462 >gi|302869712|ref|YP_003838349.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315503806|ref|YP_004082693.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302572571|gb|ADL48773.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315410425|gb|ADU08542.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 215 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERET L+L G + ++IA++L LS TV ++ + KL NR++ AI Sbjct: 151 APRLTERETEVLRLVAKGLSYKQIADRLSLSHRTVQNHVQNTLGKLQLHNRVELTRYAIE 210 Query: 231 FG 232 G Sbjct: 211 RG 212 >gi|269128235|ref|YP_003301605.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313193|gb|ACY99567.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 253 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 5/83 (6%) Query: 153 CYQVITDFLELFKK-----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++IT+F L K+ + A LTERE L+L G + EIA++L +S +TV Sbjct: 164 ASKLITEFAALAKRSEERQQQVPAPKLTEREMEVLRLVARGLGNREIAKELFISENTVKN 223 Query: 208 YLGSATVKLDAVNRIQAIAKAIR 230 ++ + KL +R++A+ A+R Sbjct: 224 HVRNILEKLQLHSRMEAVVYAVR 246 >gi|254884986|ref|ZP_05257696.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|319640388|ref|ZP_07995112.1| transcriptional regulator [Bacteroides sp. 3_1_40A] gi|254837779|gb|EET18088.1| transcriptional regulator [Bacteroides sp. 4_3_47FAA] gi|317387991|gb|EFV68846.1| transcriptional regulator [Bacteroides sp. 3_1_40A] Length = 256 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + A LT RE L+L G+ S+EIA+KL +S+HTV+ + + KL N ++AI Sbjct: 190 NPAFGLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLGVQNSLEAI 246 >gi|256389975|ref|YP_003111539.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356201|gb|ACU69698.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 208 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L + DG T +IA +L LS TV YL + K A NR +A+ A + G+ Sbjct: 148 LTPRERDVLAASADGSTIADIARRLHLSEGTVRNYLSACIQKTAARNRTEAVRTAQQRGW 207 Query: 234 I 234 + Sbjct: 208 L 208 >gi|73662256|ref|YP_301037.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494771|dbj|BAE18092.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 207 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 45/95 (47%), Gaps = 6/95 (6%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +LA E II H VI E K+ A L++RE+ L G T++EIAE L Sbjct: 119 VLAGEKII--HPQAQHVI----ETVSKKPHYANKLSKRESEVLTEMAKGKTNKEIAETLF 172 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S T+ ++ KL +R QA A++ I Sbjct: 173 VSEKTIKTHVSHIFSKLQVTDRTQAAIYAMQNNLI 207 >gi|152966411|ref|YP_001362195.1| response regulator receiver protein [Kineococcus radiotolerans SRS30216] gi|151360928|gb|ABS03931.1| response regulator receiver protein [Kineococcus radiotolerans SRS30216] Length = 151 Score = 40.4 bits (93), Expect = 0.19, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL +G + +IAE+LG S +T+ +L + K + A+ A R G Sbjct: 70 RLTAREAETLQLVAEGLSGAQIAERLGRSANTIAQHLATIRRKYGVRSSTAAVEAARRAG 129 Query: 233 YI 234 ++ Sbjct: 130 HL 131 >gi|298242939|ref|ZP_06966746.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555993|gb|EFH89857.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 928 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L L G ++++IAE L +++ TV ++ KL NR+QA+A+A + Sbjct: 864 LSERELEVLHLIARGDSNQKIAEMLMITLDTVKRHVTHIFEKLGVSNRVQAVARARALDW 923 Query: 234 I 234 + Sbjct: 924 L 924 >gi|293607367|ref|ZP_06689706.1| LuxR family DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] gi|292814211|gb|EFF73353.1| LuxR family DNA-binding response regulator [Achromobacter piechaudii ATCC 43553] Length = 212 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT R+ L+L DG ++EI+E+L ++ TV ++ + L +NR QA A R Sbjct: 146 RTLTPRQQEVLRLMCDGLRNKEISERLCMTEKTVKTHVSAILAALGVLNRTQATLVARRG 205 Query: 232 G 232 G Sbjct: 206 G 206 >gi|302547687|ref|ZP_07300029.1| putative two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302465305|gb|EFL28398.1| putative two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 235 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE ++ G T+EE+A L +++ TV +LG+ KL A NR++ A A G Sbjct: 170 LTQRELDVVRRVARGRTNEEVAADLYVTLSTVKTHLGNVQRKLAARNRVEIAAWAWENG- 228 Query: 234 IC 235 IC Sbjct: 229 IC 230 >gi|72162216|ref|YP_289873.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71915948|gb|AAZ55850.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 236 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L+L G G T+ EIA +L L TV ++G KL +R+QA+ Sbjct: 160 RLTRREREVLRLLGRGLTNAEIARQLVLGETTVKTHVGRVLAKLGLRDRVQAV 212 >gi|15614660|ref|NP_242963.1| two-component response regulator [Bacillus halodurans C-125] gi|10174716|dbj|BAB05816.1| two-component response regulator [Bacillus halodurans C-125] Length = 210 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 32/58 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE + L+ G+G ++E+AE+LGLSV TV KL +R Q AIR Sbjct: 149 TLTPREIAILKCIGEGLNNKEVAERLGLSVGTVKNQTSQILDKLALRDRTQLAIYAIR 206 >gi|29828913|ref|NP_823547.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|15824126|dbj|BAB69292.1| two-compnent system regulatory protein [Streptomyces avermitilis] gi|29606018|dbj|BAC70082.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 218 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L ++ +I+ +L ++ TV +LG+ KL A +R++A+ KA+ G Sbjct: 154 LTRREIEILTLVSKAMSNRQISRRLTIAEGTVKRHLGTIFTKLGARSRLEAVNKAVSIGL 213 Query: 234 I 234 I Sbjct: 214 I 214 >gi|306431674|emb|CBM41479.1| N-acyl homoserine lactone sensor/regulator [Erwinia toletana] Length = 245 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 5/89 (5%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVH 203 ++IEAH + + +E K ++ +++ ++RE L A G T EIA LG+ + Sbjct: 150 LLIEAHEKITSLYKNIIESEKNKAINKKDIFSQRENEILYWASIGKTYPEIAVILGIKIS 209 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 TV ++G+ KL +N AIR G Sbjct: 210 TVKFHIGNVVKKLGVLNA----KHAIRLG 234 >gi|257869647|ref|ZP_05649300.1| regulatory protein [Enterococcus gallinarum EG2] gi|257803811|gb|EEV32633.1| regulatory protein [Enterococcus gallinarum EG2] Length = 209 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 4/107 (3%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN-LTERETSCLQLA 185 GY++ TS +A+ + G +V T ++ R+ + LT RE L L Sbjct: 100 GYLLKTSTAHEIADAIRATQRGERVLEPEVTTKMMDRLTNRTPILHDDLTNREKEVLLLI 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +G +++EIA++L +++ TV ++ + KL+ +R QA A + G Sbjct: 160 AEGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHG 206 >gi|257069626|ref|YP_003155881.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560444|gb|ACU86291.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 222 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + R LT+RET L G G ++ +I +L +S TV A++ KLD NR+Q Sbjct: 146 QDRHPGLEQLTDRETEVLGAVGAGLSNAQIGMRLFMSEATVKAHVSKIFAKLDCTNRVQ 204 >gi|315499018|ref|YP_004087822.1| transcriptional regulator, luxr family [Asticcacaulis excentricus CB 48] gi|315417030|gb|ADU13671.1| transcriptional regulator, LuxR family [Asticcacaulis excentricus CB 48] Length = 132 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ A ++ RE + L G +++EIA KL +S HTV ++ KL A R A+ Sbjct: 64 QAQTALGISARELTVLHELAAGQSNKEIARKLSVSPHTVKTHVARLYDKLQATRRTDAVR 123 Query: 227 KAIRFGYI 234 KA G I Sbjct: 124 KARELGLI 131 >gi|237880797|gb|ACR33055.1| response regulator [Actinoplanes garbadinensis] Length = 231 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 32/53 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + L++RE S L+L G G T+ EI+ +L LS TV ++ KL NR+QA Sbjct: 162 KQLSDREQSILRLLGAGLTNAEISRQLFLSAATVKEHVSVILSKLGVANRVQA 214 >gi|269838161|ref|YP_003320389.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269787424|gb|ACZ39567.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 983 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L DG T ++AE+L LS TV+ +L S KL +R A A RF Sbjct: 923 LTPREVEVLRLVADGLTDAQVAERLFLSPRTVSQHLRSIYNKLGVSSR----AAATRFA 977 >gi|256376144|ref|YP_003099804.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920447|gb|ACU35958.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 214 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%) Query: 151 GACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G +++ +F R+ A R L T RE + G G ++ IA +L LS TV Sbjct: 129 GVTRRLLLEFAAEPDGRTEARRRLSGLTPREREVAEAVGRGASNAGIARELFLSESTVKV 188 Query: 208 YLGSATVKLDAVNRIQ 223 ++G KLDA NR Q Sbjct: 189 HIGRIMAKLDAANRTQ 204 >gi|213967475|ref|ZP_03395623.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301386436|ref|ZP_07234854.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302058672|ref|ZP_07250213.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302131192|ref|ZP_07257182.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927776|gb|EEB61323.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 240 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/65 (40%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 ++R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 175 SSRCLTLRELEVLQWARDGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEAL 234 Query: 230 RFGYI 234 G I Sbjct: 235 CRGLI 239 >gi|297196049|ref|ZP_06913447.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197723312|gb|EDY67220.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +I ++L+ ++ + + LT RE L+L +G +S++IAE L +SV TV + Sbjct: 133 GAVTALIRNYLDRARQGHETPDQILTAREEEVLKLVAEGRSSKDIAEILFISVKTVQRHR 192 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R+ AIR G I Sbjct: 193 ANLLRKLGLRDRLDLTRYAIRAGLI 217 >gi|172039086|ref|YP_001805587.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700540|gb|ACB53521.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 265 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G + +IAEKL ++V TV ++ + KL +R QA +A+R G Sbjct: 204 LTDREFDVLELIVGGCNNADIAEKLCITVGTVKTHVRNILNKLCVDDRTQAAVRALRSGL 263 Query: 234 I 234 + Sbjct: 264 V 264 >gi|158339385|ref|YP_001520562.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158309626|gb|ABW31243.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 208 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE LQL G +++EIA L +S TV ++ + KL +R QA+ A++ G Sbjct: 144 DLTERELEVLQLLSKGNSNQEIAAALTISEGTVKFHINNILSKLGVKDRTQAVIMALKKG 203 >gi|86359865|ref|YP_471756.1| conjugal transfer transcriptional regulator protein [Rhizobium etli CFN 42] gi|28453858|gb|AAO43545.1| transcriptional activator protein TraR [Rhizobium etli CFN 42] gi|86283967|gb|ABC93029.1| conjugal transfer transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 239 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA--VNRIQAIAK 227 R L+ RE +CL A G T+ E A G++ TV YL A K DA V ++ AIAK Sbjct: 177 RTLSPREMTCLLWATKGKTAPETAMLTGINARTVQHYLDKAREKFDAQSVPQLVAIAK 234 >gi|13475464|ref|NP_107028.1| two-component regulator [Mesorhizobium loti MAFF303099] gi|14026216|dbj|BAB52814.1| two-component regulator [Mesorhizobium loti MAFF303099] Length = 223 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 41/74 (55%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +E + + + + LT+RE LQL G+G +++EIA L +SV TV ++ + KL Sbjct: 137 MERNTRPAESTKALTQREGEVLQLIGNGLSNKEIALDLSVSVATVKHHVHNILQKLKLPR 196 Query: 221 RIQAIAKAIRFGYI 234 R QA+ + +I Sbjct: 197 RTQAMRRVREAPWI 210 >gi|86140863|ref|ZP_01059422.1| transcriptional regulator, LuxR family protein [Leeuwenhoekiella blandensis MED217] gi|85832805|gb|EAQ51254.1| transcriptional regulator, LuxR family protein [Leeuwenhoekiella blandensis MED217] Length = 208 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 3/83 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLA 185 +GY++ S L N + A G + L F++ SA LT+R+ L+L Sbjct: 99 SGYILKNSSLQTLKNAIETVAEGTPFFDSQIDLRAFEENHSATSKSGLLTKRQLEILRLI 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAY 208 G TS EIA++L + VHTV+ + Sbjct: 159 AQGKTSREIADELFIGVHTVDTH 181 >gi|301382983|ref|ZP_07231401.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato Max13] gi|302062866|ref|ZP_07254407.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato K40] gi|302131657|ref|ZP_07257647.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 247 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ELF +A L+ RET L+ G EIAE +S TV ++ + + KL+ Sbjct: 177 ELFP--PTANCKLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTA 234 Query: 222 IQAIAKAIRFGYI 234 QA+ KAI+ G + Sbjct: 235 KQAVYKAIKMGMV 247 >gi|302867924|ref|YP_003836561.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315505671|ref|YP_004084558.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302570783|gb|ADL46985.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412290|gb|ADU10407.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 222 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L+L G ++ E+AE L LS TV ++ KL +R+QA+ A G Sbjct: 154 TLTRRETEVLRLLAGGLSNAELAEALHLSEATVKTHVARILAKLRLRDRVQAVVVAYETG 213 Query: 233 YIC 235 + Sbjct: 214 LVS 216 >gi|257867775|ref|ZP_05647428.1| regulatory protein [Enterococcus casseliflavus EC30] gi|257874102|ref|ZP_05653755.1| regulatory protein [Enterococcus casseliflavus EC10] gi|257801858|gb|EEV30761.1| regulatory protein [Enterococcus casseliflavus EC30] gi|257808266|gb|EEV37088.1| regulatory protein [Enterococcus casseliflavus EC10] Length = 209 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%) Query: 155 QVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +V T ++ R+ +LT RE L L +G +++EIA+ L +++ TV ++ + Sbjct: 128 EVTTKMMDRLTNRTPILHEDLTNREQEVLLLIAEGKSNQEIADALFITLKTVKTHVSNIL 187 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL+ +R QA A + G I Sbjct: 188 SKLEVEDRTQATIYAFKHGLI 208 >gi|223038804|ref|ZP_03609096.1| transcriptional regulator, LuxR family protein [Campylobacter rectus RM3267] gi|222879777|gb|EEF14866.1| transcriptional regulator, LuxR family protein [Campylobacter rectus RM3267] Length = 204 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S+ NLT +E QL G T++EI E L ++V TV A++G+ K A +RI I Sbjct: 140 SNLLENLTNKEKEIAQLVYKGLTNQEIGEILQITVRTVKAHVGTIFEKTGAKDRINLI 197 >gi|218460663|ref|ZP_03500754.1| two component transcriptional regulator, LuxR family protein [Rhizobium etli Kim 5] Length = 61 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 23/54 (42%), Positives = 28/54 (51%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 T+RE+ L G + +I E LGLS TVN +L VKL NR A KA Sbjct: 1 TQRESEVLLWISKGKATRDIGEILGLSARTVNTHLEQIYVKLGVENRASAAVKA 54 >gi|28871016|ref|NP_793635.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato str. DC3000] gi|13182979|gb|AAK15017.1|AF234628_3 PsmR [Pseudomonas syringae pv. maculicola] gi|28854266|gb|AAO57330.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato str. DC3000] Length = 247 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ELF +A L+ RET L+ G EIAE +S TV ++ + + KL+ Sbjct: 177 ELFP--PTANCKLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTA 234 Query: 222 IQAIAKAIRFGYI 234 QA+ KAI+ G + Sbjct: 235 KQAVYKAIKMGMV 247 >gi|308235176|ref|ZP_07665913.1| response regulator receiver domain protein [Gardnerella vaginalis ATCC 14018] Length = 240 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L G +++EIA+KL +S+ TV ++ K+DA +R+QA+ A G Sbjct: 179 DLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIDARDRVQAVVFAYENG 238 Query: 233 YI 234 + Sbjct: 239 LV 240 >gi|302334932|ref|YP_003800139.1| transcriptional regulator, LuxR family [Olsenella uli DSM 7084] gi|301318772|gb|ADK67259.1| transcriptional regulator, LuxR family [Olsenella uli DSM 7084] Length = 245 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R LT+RE ++L G +++ +AE+L +S HTV ++ S KL+ NR Q Sbjct: 185 RRLTKREREVMRLVCVGMSNQRVAEELFISEHTVKLHVSSILKKLNLANRTQ 236 >gi|297161015|gb|ADI10727.1| transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 257 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L L G+T+++ A KLG+S T+ +L K + +R A+A +R Sbjct: 193 LTERENQVLALIATGHTNDQAARKLGISPRTIRKHLEGVFSKANVPSRAAAVAWWLR 249 >gi|229181658|ref|ZP_04308983.1| Two component transcriptional regulator, LuxR [Bacillus cereus 172560W] gi|228601854|gb|EEK59350.1| Two component transcriptional regulator, LuxR [Bacillus cereus 172560W] Length = 215 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++E+A L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEVASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|196233724|ref|ZP_03132564.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196222238|gb|EDY16768.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 208 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V++ F L + + + LT RE L L G +EIA++LG+S TV A+L + Sbjct: 133 KVVSHF-HLARPANPEMQTLTPREHEILTLLARGLHYKEIADQLGISTSTVRAHLHTIYG 191 Query: 215 KLDAVNRIQAIAK 227 KL +R +A+ K Sbjct: 192 KLHVQSRTEAVVK 204 >gi|16077897|ref|NP_388711.1| two-component response regulator YfiJ [Bacillus subtilis subsp. subtilis str. 168] gi|221308666|ref|ZP_03590513.1| hypothetical protein Bsubs1_04608 [Bacillus subtilis subsp. subtilis str. 168] gi|221312990|ref|ZP_03594795.1| hypothetical protein BsubsN3_04559 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317916|ref|ZP_03599210.1| hypothetical protein BsubsJ_04503 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322189|ref|ZP_03603483.1| hypothetical protein BsubsS_04599 [Bacillus subtilis subsp. subtilis str. SMY] gi|81818210|sp|P94439|YFIK_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yfiK gi|1817535|dbj|BAA11401.1| YfiK [Bacillus subtilis] gi|2633154|emb|CAB12659.1| two-component response regulator [YfiJ] [Bacillus subtilis subsp. subtilis str. 168] Length = 220 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L G G ++EIAEKL ++ TV ++ + KL +R QA ++R+G Sbjct: 157 DLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVRYG 216 >gi|328884160|emb|CCA57399.1| Helix-turn-helix, type 11 domain protein [Streptomyces venezuelae ATCC 10712] Length = 340 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 C+Q + E + + L++++ + L + G E+IA LG+S+ TV+ L Sbjct: 251 CWQAAARYGE--EPGENGGDGLSDQQRAALHMLASGIKDEQIARSLGVSLRTVSRLLSEV 308 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 +L A +R +A KA R G + Sbjct: 309 MQELGAASRFEAGVKAARLGLL 330 >gi|289167132|ref|YP_003445399.1| response regulator [Streptococcus mitis B6] gi|288906697|emb|CBJ21531.1| response regulator [Streptococcus mitis B6] Length = 199 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G++++EIA+KL LS TV Y+ + KL A NR +A A G+ Sbjct: 139 LTEQEIAVLKGIAQGFSNQEIADKLYLSNGTVRNYVTNILSKLHAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|150003225|ref|YP_001297969.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|294776005|ref|ZP_06741501.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] gi|149931649|gb|ABR38347.1| transcriptional regulator [Bacteroides vulgatus ATCC 8482] gi|294450143|gb|EFG18647.1| transcriptional regulator, LuxR family [Bacteroides vulgatus PC510] Length = 256 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 35/57 (61%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + A LT RE L+L G+ S+EIA+KL +S+HTV+ + + KL N ++AI Sbjct: 190 NPAFGLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLGVQNSLEAI 246 >gi|118465118|ref|YP_884392.1| two-component system response regulator [Mycobacterium avium 104] gi|118166405|gb|ABK67302.1| two-component system response regulator [Mycobacterium avium 104] Length = 218 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 8/114 (7%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRS-----SAARNLTERETSC 181 G+V+ S L V A G Y V + L ++K + +A LT RE Sbjct: 103 GFVLKDSSAEELIRAVRAVARGEGYLDPAVTSRVLTTYRKAAPGPHGAAIAELTTRERDV 162 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L G G ++ EIA++L +S TV +++G KLD +R AI A G + Sbjct: 163 LTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA 216 >gi|121610317|ref|YP_998124.1| regulatory protein LuxR [Verminephrobacter eiseniae EF01-2] gi|121554957|gb|ABM59106.1| regulatory protein, LuxR [Verminephrobacter eiseniae EF01-2] Length = 913 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 34/56 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 A LT RE L++ G+ + +AEKL +S TV ++L + KLDA +R +A+A Sbjct: 849 AEALTPRELDVLRMLAMGHRNRVLAEKLFVSEFTVKSHLRRISAKLDAQSRTEAVA 904 >gi|120405019|ref|YP_954848.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] gi|119957837|gb|ABM14842.1| response regulator receiver protein [Mycobacterium vanbaalenii PYR-1] Length = 864 Score = 40.4 bits (93), Expect = 0.20, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 3/64 (4%) Query: 169 SAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +AAR L T RE +L G ++ IAE+L LSV TV ++ A KLD +R +A Sbjct: 799 AAARPLPLTPREREIAELVAAGLSNRHIAEQLVLSVRTVEGHVYRACFKLDVADR-DELA 857 Query: 227 KAIR 230 K IR Sbjct: 858 KLIR 861 >gi|163848177|ref|YP_001636221.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526082|ref|YP_002570553.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669466|gb|ABY35832.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449961|gb|ACM54227.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 236 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Query: 141 LANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 L N+ ++ +V+ F EL + +S LT RE L G +++EIA Sbjct: 129 LINDAVLAHPNVAARVLHQFRELAATDEEDGASLFAPLTSREIEILDCIARGLSNKEIAS 188 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S TV ++ S KL +R A+ AI+ G+I Sbjct: 189 ELSISSQTVKNHITSILAKLQVNDRTMAVIVAIKKGWI 226 >gi|320161029|ref|YP_004174253.1| putative two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994882|dbj|BAJ63653.1| putative two-component response regulator [Anaerolinea thermophila UNI-1] Length = 356 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +S +LTERE L L G T+ EIAE L +S +TV +L S KL+ R A+A Sbjct: 290 KSDDLSSLTEREREVLLLLAQGLTNREIAEALVISNNTVKRHLKSIFSKLNIHTRSAAVA 349 Query: 227 K 227 K Sbjct: 350 K 350 >gi|304404930|ref|ZP_07386590.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345809|gb|EFM11643.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 237 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R +AA LT+RE L+ G +++EI KLG+S +TV +L + KL NR+Q Sbjct: 171 RRTAATPLTDREKEILERVAYGDSNKEIGAKLGISENTVKNHLKNILQKLHLDNRVQ 227 >gi|167621653|ref|YP_001672161.1| ATP-dependent transcription regulator LuxR [Caulobacter sp. K31] gi|167351776|gb|ABZ74502.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Caulobacter sp. K31] Length = 182 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E + +Q +G+++ +IAEK +S TV ++ + KL NR+QA+ KA + G Sbjct: 121 LTRKELAMIQRIKEGFSNRDIAEKHRISEDTVKWHIRNIFSKLQVKNRVQALLKAEQIGI 180 Query: 234 I 234 + Sbjct: 181 L 181 >gi|94499701|ref|ZP_01306238.1| two-component system regulatory protein [Oceanobacter sp. RED65] gi|94428455|gb|EAT13428.1| two-component system regulatory protein [Oceanobacter sp. RED65] Length = 211 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ ET L+L GY++ EIA + + TV + S KLD +R QA+ +AI G Sbjct: 150 ELSTSETQVLRLVAAGYSNNEIASTVFKAQGTVRNQISSILEKLDVRDRTQAVMRAIELG 209 Query: 233 YI 234 I Sbjct: 210 LI 211 >gi|84387471|ref|ZP_00990490.1| response regulator [Vibrio splendidus 12B01] gi|84377724|gb|EAP94588.1| response regulator [Vibrio splendidus 12B01] Length = 210 Score = 40.4 bits (93), Expect = 0.20, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 4/99 (4%) Query: 129 NGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ +E L E++ +AH A V++ +L + R+ LTERE LQ Sbjct: 101 DGYLLKDTEPDELI-ELLKQAHHGDKAYSSVVSRYLNDAESRNDIFDQLTEREMQILQEV 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY +++IA+ L +S TV ++ S KL +R A Sbjct: 160 AKGYRNKQIADHLFISESTVKVHMKSLLKKLQVPSRTAA 198 >gi|327439322|dbj|BAK15687.1| DNA-binding HTH domain-containing protein [Solibacillus silvestris StLB046] Length = 73 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE +L Y++ EI+ KLG+S TV ++ + KL +R QAI + +R Sbjct: 10 LTKREREIFELLIKDYSTREISTKLGISEKTVRNHISNTIQKLGVSSRTQAILELLRL 67 >gi|300771307|ref|ZP_07081183.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300761977|gb|EFK58797.1| response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 209 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Query: 165 KKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 KK + RN +T RE LQ A G TS EIA+ L +S HTV ++ + K N Sbjct: 135 KKTAEGLRNVPKITRREKEILQEAAKGLTSTEIADVLFISSHTVESHRKNLIEKFKVKNI 194 Query: 222 IQAIAKAIRFGYI 234 I A+ +G I Sbjct: 195 ASVIGLALEYGLI 207 >gi|119964371|ref|YP_947127.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1] gi|119951230|gb|ABM10141.1| putative transcriptional regulator, LuxR family [Arthrobacter aurescens TC1] Length = 910 Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 23/53 (43%), Positives = 30/53 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 S A LTERE +LAG G ++ EIA +G+SV TV +L KL +R Sbjct: 851 SDAPVLTERERQIAKLAGKGVSNREIAMDIGVSVRTVEGHLYQVFTKLGVSSR 903 >gi|327390805|gb|EGE89145.1| bacterial regulatory s, luxR family protein [Streptococcus pneumoniae GA04375] Length = 72 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + Sbjct: 7 LTARERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQ 63 >gi|322383770|ref|ZP_08057521.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151982|gb|EFX44925.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 213 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L DG T+++IAE+L +S+ TV ++ + +K + +R Q A R G+ Sbjct: 149 LTIREKEVLLLIADGKTNKDIAEELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHRKGW 208 Query: 234 I 234 + Sbjct: 209 V 209 >gi|119715674|ref|YP_922639.1| response regulator receiver [Nocardioides sp. JS614] gi|119536335|gb|ABL80952.1| response regulator receiver [Nocardioides sp. JS614] Length = 213 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 9/111 (8%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------LTERET 179 +GY++ S +A V + A G + ++ FK+ S R+ LTERE Sbjct: 96 SGYLLKDSSIEEVAQAVRVVADGQSLISPSMAVKLIDEFKQMSRPERDHVPGLRLTEREL 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+L G + EIA++L +S +TV ++ + KL +R++A+ A++ Sbjct: 156 EVLRLVAKGMNNREIAKELFISENTVKNHVRNILEKLQLHSRMEAVMYAVK 206 >gi|322386960|ref|ZP_08060584.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321269242|gb|EFX52178.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 210 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 120 FPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 +PV L GY++ TS + ++ A + + A ++ +E + +LT R Sbjct: 90 YPV-LDAGARGYMLKTSSADEILHAVRKVAKGEFAIETEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 E L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A Sbjct: 149 ERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYA 199 >gi|256394916|ref|YP_003116480.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361142|gb|ACU74639.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 895 Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S + LT RE L G T+ IAEKL LSV TV ++L KLD NR A+ +A Sbjct: 824 STSAPLTAREREIANLVSTGMTNTAIAEKLFLSVRTVESHLRQIYRKLDVPNR-AALTRA 882 Query: 229 I 229 + Sbjct: 883 L 883 >gi|258655123|ref|YP_003204279.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558348|gb|ACV81290.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 209 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L +R+ LT RE L++ DG ++ IA +LG++ TV A+L S ++ +R Sbjct: 138 LDSRRAPQPNLLTAREEQVLRMVADGLANKMIARRLGITERTVKAHLTSVYQRIGVTDRT 197 Query: 223 QA 224 QA Sbjct: 198 QA 199 >gi|227540526|ref|ZP_03970575.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227239608|gb|EEI89623.1| response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 209 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 3/73 (4%) Query: 165 KKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 KK + RN +T RE LQ A G TS EIA+ L +S HTV ++ + K N Sbjct: 135 KKTAEGLRNVPKITRREKEILQEAAKGLTSTEIADVLFISSHTVESHRKNLIEKFKVKNI 194 Query: 222 IQAIAKAIRFGYI 234 I A+ +G I Sbjct: 195 ASVIGLALEYGLI 207 >gi|254389093|ref|ZP_05004323.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702810|gb|EDY48622.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 207 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 32/54 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT RET L+L G ++ EIAE+L ++ TV ++G KL +R QA+ Sbjct: 140 KELTPRETEVLELIAQGLSNLEIAERLVVAEQTVKTHIGRILAKLRLRDRAQAV 193 >gi|126732495|ref|ZP_01748294.1| autoinducer-binding transcriptional regulator, LuxR family protein [Sagittula stellata E-37] gi|126707134|gb|EBA06201.1| autoinducer-binding transcriptional regulator, LuxR family protein [Sagittula stellata E-37] Length = 253 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT R+ L+ GDG T ++IA+ +GL+ T+ +L A L+ QA+AKA Sbjct: 186 QTLTPRQREALEWVGDGKTMQDIAQIMGLTQATIEKHLRLARETLNVETTAQAVAKA 242 >gi|332669606|ref|YP_004452614.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338644|gb|AEE45227.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 224 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ +G ++ EIA++L LS TV ++G KL +R+QA+ A G Sbjct: 159 GLTPREVEVLREVAEGLSNGEIADRLFLSEATVKTHVGRILAKLRVRDRVQAVVVAYETG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|159037234|ref|YP_001536487.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916069|gb|ABV97496.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 245 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 30/51 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ERE G G ++ EIA +L +SV TV AY+ VKLD NR+Q Sbjct: 184 TLSEREREVAIALGQGRSNAEIAGELFMSVATVKAYVSRLLVKLDLNNRVQ 234 >gi|156977745|ref|YP_001448651.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116] gi|156529339|gb|ABU74424.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116] Length = 217 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G ++ +IA+ L +S HTV ++L S KL+ NR+QA+A A R Sbjct: 158 LTRREMQVLTALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAVAWAKR 214 >gi|149912607|ref|ZP_01901141.1| two component transcriptional regulator, LuxR [Roseobacter sp. AzwK-3b] gi|149813013|gb|EDM72839.1| two component transcriptional regulator, LuxR [Roseobacter sp. AzwK-3b] Length = 217 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTE E L+ A +G T++ IA ++GL+ TV ++ + KL A NR+QA+ A Sbjct: 155 LTEIELLILKFAAEGMTNKSIASQVGLNETTVKMHMRAICRKLRASNRVQAVVIA 209 >gi|89053644|ref|YP_509095.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1] gi|88863193|gb|ABD54070.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1] Length = 243 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 11/155 (7%) Query: 86 PIIWQSIQEETVIESSGQLSVRLE----GGLLPFAGIAFPVRLGFHKNGYVI--FTSEFL 139 P W IQ+ +I S Q L+ GL G+AF V +N YV F + Sbjct: 84 PFYWHEIQD--LIPPSAQTDAYLDRLRASGL--GDGLAFYVFGPGLRNAYVGLGFGRPVV 139 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 L E I EL + A L+ RE L G ++ IAE L Sbjct: 140 DLPPEQIFRLQCVAQAGHLRVCELSDQAPKEA-ALSPREKQVLDWIAKGKSNSVIAEILA 198 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S HTV+A++ S KLD +R A + + G + Sbjct: 199 MSPHTVDAHVRSIYRKLDVTDRTSAALRGVGSGVL 233 >gi|25010384|ref|NP_734779.1| hypothetical protein gbs0310 [Streptococcus agalactiae NEM316] gi|77408096|ref|ZP_00784843.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77413304|ref|ZP_00789499.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|23094736|emb|CAD45955.1| unknown [Streptococcus agalactiae NEM316] gi|77160618|gb|EAO71734.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77173280|gb|EAO76402.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 213 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS + N + A G A + ++ K + LT RE L L Sbjct: 101 KGYMLKTSSAAEILNAIRKVARGEQAIENEVDKKIKAHDKCPALHEGLTARERDILNLLA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A Sbjct: 161 KGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYA 202 >gi|325926289|ref|ZP_08187643.1| ATP-dependent transcriptional regulator [Xanthomonas perforans 91-118] gi|325543323|gb|EGD14752.1| ATP-dependent transcriptional regulator [Xanthomonas perforans 91-118] Length = 923 Score = 40.4 bits (93), Expect = 0.21, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +ERE L GY++++IA L LS +TV +L + KLDA +R A+A+A++ G Sbjct: 849 FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRESALAQALQRGL 908 Query: 234 I 234 + Sbjct: 909 L 909 >gi|291483274|dbj|BAI84349.1| hypothetical protein BSNT_01381 [Bacillus subtilis subsp. natto BEST195] Length = 220 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L G G ++EIAEKL ++ TV ++ + KL +R QA ++R+G Sbjct: 157 DLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVRYG 216 >gi|239942209|ref|ZP_04694146.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988676|ref|ZP_04709340.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445663|ref|ZP_06585053.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348610|gb|EFE75514.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 226 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L G ++ EIA +L LS TV ++G KL+ +R+Q + A G Sbjct: 158 KLTEREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETG 217 Query: 233 YI 234 + Sbjct: 218 LV 219 >gi|269954904|ref|YP_003324693.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269303585|gb|ACZ29135.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 220 Score = 40.4 bits (93), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE ++L G ++++IA++L LS+ TV YL KLD +R Q A R G Sbjct: 156 LSQREVDVVRLVALGRSNQQIADELVLSLETVRTYLRRMFAKLDVNDRTQLAVLAYRAGL 215 Query: 234 I 234 + Sbjct: 216 L 216 >gi|321314554|ref|YP_004206841.1| two-component response regulator YfiJ [Bacillus subtilis BSn5] gi|320020828|gb|ADV95814.1| two-component response regulator (YfiJ) [Bacillus subtilis BSn5] Length = 220 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L G G ++EIAEKL ++ TV ++ + KL +R QA ++R+G Sbjct: 157 DLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSVRYG 216 >gi|319744296|gb|EFV96660.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 217 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS + N + A G A + ++ K + LT RE L L Sbjct: 105 KGYMLKTSSAAEILNAIRKVARGEQAIENEVDKKIKAHDKCPALHEGLTARERDILNLLA 164 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A Sbjct: 165 KGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYA 206 >gi|256826142|ref|YP_003150102.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256689535|gb|ACV07337.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 222 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L L G T++EI ++L L++ T+ ++G+ K + +R+Q A+R Sbjct: 156 ADELTPRECDILALVARGRTNQEICDELWLTMPTIKTHIGNLRAKTQSRDRVQLALFALR 215 Query: 231 FG 232 G Sbjct: 216 VG 217 >gi|282903902|ref|ZP_06311790.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|282905667|ref|ZP_06313522.1| response regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282908637|ref|ZP_06316458.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|283958086|ref|ZP_06375537.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|297591202|ref|ZP_06949840.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|282327455|gb|EFB57747.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330959|gb|EFB60473.1| response regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282595520|gb|EFC00484.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|283790235|gb|EFC29052.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|297576088|gb|EFH94804.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|315194237|gb|EFU24630.1| hypothetical protein CGSSa00_06038 [Staphylococcus aureus subsp. aureus CGS00] Length = 200 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S+EI+EKL L+ TV Y KL A NR A KA G+ Sbjct: 140 LTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVRIDKLFADNRFDAWKKANEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|167465455|ref|ZP_02330544.1| two-component response regulator LiaR [Paenibacillus larvae subsp. larvae BRL-230010] Length = 220 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L DG T+++IAE+L +S+ TV ++ + +K + +R Q A R G+ Sbjct: 156 LTIREKEVLLLIADGKTNKDIAEELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHRKGW 215 Query: 234 I 234 + Sbjct: 216 V 216 >gi|157377077|ref|YP_001475677.1| LuxR family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157319451|gb|ABV38549.1| transcriptional regulator, LuxR family [Shewanella sediminis HAW-EB3] Length = 221 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE + +QL G ++EIA L +S HTV A++ S K + NR++ + A Sbjct: 156 LTKRERTIIQLVSSGARNKEIAHNLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210 >gi|219849670|ref|YP_002464103.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543929|gb|ACL25667.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 216 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE L G ++ EIA++L +S TV ++ S KLD +R QAI +A Sbjct: 155 LTEREMDVLHGIAAGKSNREIADQLCISEGTVKNHVSSLLAKLDVRDRTQAIIRA 209 >gi|78049092|ref|YP_365267.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78037522|emb|CAJ25267.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 923 Score = 40.4 bits (93), Expect = 0.22, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +ERE L GY++++IA L LS +TV +L + KLDA +R A+A+A++ G Sbjct: 849 FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRESALAQALQRGL 908 Query: 234 I 234 + Sbjct: 909 L 909 >gi|323443974|gb|EGB01585.1| hypothetical protein SAO46_0084 [Staphylococcus aureus O46] Length = 200 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S+EI+EKL L+ TV Y KL A NR A KA G+ Sbjct: 140 LTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIIDKLFADNRFDAWKKANEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|313888654|ref|ZP_07822319.1| response regulator receiver domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845383|gb|EFR32779.1| response regulator receiver domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 195 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G T +EIA+KL +S T+ +L + KL A N I+A A+ GY Sbjct: 131 LTKREEEILIEVLSGLTKKEIADKLYISERTLYNHLANIYAKLGAKNAIEAYKIALELGY 190 Query: 234 I 234 I Sbjct: 191 I 191 >gi|295690538|ref|YP_003594231.1| LuxR family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432441|gb|ADG11613.1| transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 137 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query: 162 ELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 E F++ +A R LT +E L+ G +++E+A LGLS +TV ++ + KL+ Sbjct: 62 ETFQRNDAALRALGLTGQEVRVLERLAAGRSNKEMARDLGLSPNTVKTHVANLYGKLEVS 121 Query: 220 NRIQAIAKA 228 R QAI KA Sbjct: 122 RRTQAIGKA 130 >gi|225022693|ref|ZP_03711885.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii ATCC 33806] gi|305682229|ref|ZP_07405033.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] gi|224944601|gb|EEG25810.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii ATCC 33806] gi|305658702|gb|EFM48205.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] Length = 223 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 38/68 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A LT RET L+L G T++EIA+ +S+ TV ++ +K ++ +R+ A+ Sbjct: 146 SPAVAELTPRETVILRLIALGLTNQEIADHEYVSMATVKTHVRHILMKTNSRDRVHAVLF 205 Query: 228 AIRFGYIC 235 A R G + Sbjct: 206 AYRTGVVS 213 >gi|222151813|ref|YP_002560973.1| two-component response regulator [Macrococcus caseolyticus JCSC5402] gi|222120942|dbj|BAH18277.1| two-component response regulator [Macrococcus caseolyticus JCSC5402] Length = 210 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 6/110 (5%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVI-TDFLELFKKRSSAA--RN-LTERETSCLQL 184 +GY + SE L N I+ A Q+ D +++ K + A RN L++RE L+ Sbjct: 102 DGYEMKDSEPKALIN--TIKQIAAGEQIFHPDVMKVRKSGMNLAHLRNPLSKRELEVLKA 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T++EIAEKL +S TV ++ KL+ +R QA +++ I Sbjct: 160 MSEGLTNKEIAEKLFVSEKTVKTHVSHIFAKLEVGDRTQASMYGVKYKLI 209 >gi|148239235|ref|YP_001224622.1| two component system response regulator [Synechococcus sp. WH 7803] gi|147847774|emb|CAK23325.1| Possible two component system response regulator [Synechococcus sp. WH 7803] Length = 227 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L++ G T++EIA L +S TV ++ S K+ +R QA+ KAI+ G Sbjct: 167 ELSDREMEVLKVLSCGMTNKEIAVTLFVSAETVKTHVSSIIGKMGVKDRTQAVIKAIKAG 226 >gi|318057517|ref|ZP_07976240.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318081139|ref|ZP_07988471.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] Length = 226 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 160 APRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 219 Query: 231 FG 232 G Sbjct: 220 QG 221 >gi|297155663|gb|ADI05375.1| response regulator receiver protein [Streptomyces bingchenggensis BCW-1] Length = 221 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G G ++ EIA L +S HTV ++ + KL +R+QA+ A G Sbjct: 154 LTARERETLRLLGCGLSNAEIAAALVVSEHTVKTHVSNILTKLGLRDRVQAVIAAYETGM 213 Query: 234 I 234 + Sbjct: 214 V 214 >gi|290963132|ref|YP_003494314.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260652658|emb|CBG75791.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 228 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G G +++EIAE+L ++ TV + A KL A +R Q + A G Sbjct: 157 TLTPREREVLTLVGSGLSNDEIAERLFVTPVTVKTHANRAMTKLGARDRAQLVVIAYETG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|239929933|ref|ZP_04686886.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291438267|ref|ZP_06577657.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291341162|gb|EFE68118.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 13/109 (11%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLEL------FKKRSSAARNLT 175 +G+++ + LA+ V + A G ++IT+F +L +A +LT Sbjct: 100 SGFLLKDASARQLADGVRVVASGEALLAPSVTRRLITEFSKLSETPRLMPSAQAAYGDLT 159 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ERET L L G ++ EIAE+L ++ T+ ++ VKL +R QA Sbjct: 160 ERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLRDRTQA 208 >gi|157693715|ref|YP_001488177.1| response regulator [Bacillus pumilus SAFR-032] gi|194015458|ref|ZP_03054074.1| response regulator [Bacillus pumilus ATCC 7061] gi|157682473|gb|ABV63617.1| response regulator [Bacillus pumilus SAFR-032] gi|194012862|gb|EDW22428.1| response regulator [Bacillus pumilus ATCC 7061] Length = 211 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L DG +++ IAE+L +++ TV ++ + KLD +R QA A R Sbjct: 150 LTAREMEILKLIADGKSNKVIAEELFITIKTVKTHITNILSKLDVEDRTQAAVYAHRHKL 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|325105483|ref|YP_004275137.1| two component transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] gi|324974331|gb|ADY53315.1| two component transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] Length = 219 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 39/71 (54%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ F E ++ + ++LT RE L+ GY +EI +KL +SV TV ++ + Sbjct: 144 KVVASFQEHKVIKNDSCKDLTNREFEILEFLSRGYRYKEIGDKLFISVETVRKHINNVYK 203 Query: 215 KLDAVNRIQAI 225 KL + I+AI Sbjct: 204 KLQVNSAIEAI 214 >gi|170756196|ref|YP_001781032.1| LuxR family DNA-binding response regulator [Clostridium botulinum B1 str. Okra] gi|169121408|gb|ACA45244.1| DNA-binding response regulator, LuxR family [Clostridium botulinum B1 str. Okra] Length = 217 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 20/115 (17%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--------VITDFL-------ELFKKRS 168 L F +GY++ S +NE+I E AC + V + + EL Sbjct: 96 LKFGASGYLLKDS-----SNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKELNDDDI 150 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S NLTERE + ++ +G++++EIAE++ LS T+ + + KLD +R Q Sbjct: 151 SLKYNLTEREINIIRQIANGFSNKEIAEEIYLSEGTIKNNISTILSKLDLRDRTQ 205 >gi|168484073|ref|ZP_02709025.1| DNA-binding response regulator [Streptococcus pneumoniae CDC1873-00] gi|172042589|gb|EDT50635.1| DNA-binding response regulator [Streptococcus pneumoniae CDC1873-00] gi|332199429|gb|EGJ13506.1| response regulator [Streptococcus pneumoniae GA47368] Length = 199 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G++++EI +KL LS TV Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIVQGFSNQEIVDKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|156976607|ref|YP_001447513.1| transcriptional dual regulator NarL [Vibrio harveyi ATCC BAA-1116] gi|156528201|gb|ABU73286.1| hypothetical protein VIBHAR_05381 [Vibrio harveyi ATCC BAA-1116] Length = 204 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 7/123 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAAR 172 A I VR G +GY++ +E L + ++ +AH A Q + +L + + Sbjct: 84 ADIEAIVRSG--ADGYLLKDTEPDELVD-LLKQAHEGDKAYSQAVAKYLNEREGQEDVFD 140 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-RF 231 LT+RET LQ G+ +++IA++L +S TV ++ S KL +R A + RF Sbjct: 141 TLTDRETQILQEVARGFRNKQIADRLFISESTVKVHMKSLLKKLKVPSRTAATVLYLERF 200 Query: 232 GYI 234 G I Sbjct: 201 GEI 203 >gi|170726983|ref|YP_001761009.1| two component LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169812330|gb|ACA86914.1| two component transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 213 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 12/120 (10%) Query: 124 LGFHKNGYVIFTSE--------FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 + F+ +GY++ SE L + E +I A +++ L K SS NLT Sbjct: 96 IKFNTDGYLLKDSEPEELIEKINLAIQGEFVISA--PLTKILARSLRPESKASSPLENLT 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI--RFGY 233 +RE L+L G ++++IA LG++ TV ++ + KL +R++A A+ + G+ Sbjct: 154 QRELQNLKLIASGKSNKDIANTLGIAETTVKVHVKNLLKKLGLKSRVEAAVWAVEHKIGH 213 >gi|92115421|ref|YP_575349.1| LuxR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91798511|gb|ABE60650.1| transcriptional regulator, LuxR family [Chromohalobacter salexigens DSM 3043] Length = 238 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE + L G G ++ EIA++L +S HTV ++L + K+ NRIQA+ A Sbjct: 163 LTHRELEIIGLLGTGASNTEIADQLFVSEHTVKSHLYNIFRKIKVHNRIQAMNWA 217 >gi|323441106|gb|EGA98813.1| hypothetical protein SAO11_0173 [Staphylococcus aureus O11] Length = 200 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S+EI+EKL L+ TV Y KL A NR A KA G+ Sbjct: 140 LTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIIDKLFADNRFDAWKKANEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|262370436|ref|ZP_06063762.1| two component transcriptional regulator [Acinetobacter johnsonii SH046] gi|262314778|gb|EEY95819.1| two component transcriptional regulator [Acinetobacter johnsonii SH046] Length = 228 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L L G ++ EIAE+L +S +TV +++ KL R +A++ A G Sbjct: 167 QLTNRETEILNLVAQGLSNREIAEQLFVSRYTVESHIKHIYRKLSVSKRTKAVSTARSLG 226 Query: 233 YI 234 + Sbjct: 227 IL 228 >gi|260433688|ref|ZP_05787659.1| autoinducer-binding transcriptional regulator, LuxR family [Silicibacter lacuscaerulensis ITI-1157] gi|260417516|gb|EEX10775.1| autoinducer-binding transcriptional regulator, LuxR family [Silicibacter lacuscaerulensis ITI-1157] Length = 251 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT+R+ L+ GDG T+++IA +GL+ TV +L A L QA+ KA Sbjct: 184 RALTKRQREALEWVGDGKTTQDIALLMGLTTATVEKHLRLAREALSVETTAQAVLKA 240 >gi|258652577|ref|YP_003201733.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555802|gb|ACV78744.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 352 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + ++ +TERE L L +G T +IA++L +S HTV+ ++ +A VKL Sbjct: 277 RPHATGPDAITEREREILALVAEGLTDPQIAQRLVVSPHTVHRHIANARVKL 328 >gi|149275963|ref|ZP_01882108.1| response regulator [Pedobacter sp. BAL39] gi|149233391|gb|EDM38765.1| response regulator [Pedobacter sp. BAL39] Length = 220 Score = 40.4 bits (93), Expect = 0.22, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 9/101 (8%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLE---LFKKRS----SAARNLTERET 179 NGY+ SE L N + + Y +++ L+ L K + AA +LT+RE Sbjct: 102 NGYIAKNSELTELKNAIEATYNNGFYFNELVLKTLQSGSLLNKNNVKGFDAASSLTQREK 161 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L+L D T+ EIAE L +S+ TV+ + + VK A N Sbjct: 162 EILRLICDECTTAEIAEALSISLRTVDGHRNNLLVKTGAKN 202 >gi|299137741|ref|ZP_07030922.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298600382|gb|EFI56539.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 212 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L++RE LQL G ++ EIAE+L + TV +++ ++L+ +R QA+ + ++ G Sbjct: 149 HLSQREQEVLQLLFAGKSNREIAEELAIKEATVKSHVSVILMRLNVSDRTQAVVEGLKRG 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|257425387|ref|ZP_05601812.1| response regulator receiver [Staphylococcus aureus subsp. aureus 55/2053] gi|257428048|ref|ZP_05604446.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257430679|ref|ZP_05607061.1| response regulator receiver [Staphylococcus aureus subsp. aureus 68-397] gi|257433439|ref|ZP_05609797.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436281|ref|ZP_05612328.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|282910905|ref|ZP_06318708.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282914111|ref|ZP_06321898.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282919033|ref|ZP_06326768.1| response regulator [Staphylococcus aureus subsp. aureus C427] gi|282924216|ref|ZP_06331890.1| response regulator [Staphylococcus aureus subsp. aureus C101] gi|293501141|ref|ZP_06666992.1| response regulator [Staphylococcus aureus subsp. aureus 58-424] gi|293510101|ref|ZP_06668809.1| response regulator [Staphylococcus aureus subsp. aureus M809] gi|293526691|ref|ZP_06671376.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|257271844|gb|EEV03982.1| response regulator receiver [Staphylococcus aureus subsp. aureus 55/2053] gi|257274889|gb|EEV06376.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257278807|gb|EEV09426.1| response regulator receiver [Staphylococcus aureus subsp. aureus 68-397] gi|257281532|gb|EEV11669.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257284563|gb|EEV14683.1| two component transcriptional regulator [Staphylococcus aureus subsp. aureus M876] gi|282313603|gb|EFB43996.1| response regulator [Staphylococcus aureus subsp. aureus C101] gi|282316843|gb|EFB47217.1| response regulator [Staphylococcus aureus subsp. aureus C427] gi|282322179|gb|EFB52503.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282325510|gb|EFB55819.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|290920763|gb|EFD97826.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|291096146|gb|EFE26407.1| response regulator [Staphylococcus aureus subsp. aureus 58-424] gi|291467045|gb|EFF09563.1| response regulator [Staphylococcus aureus subsp. aureus M809] gi|312438277|gb|ADQ77348.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] Length = 200 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S+EI+EKL L+ TV Y KL A NR A KA G+ Sbjct: 140 LTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVRIDKLFADNRFDAWKKANEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|114765358|ref|ZP_01444475.1| autoinducer-binding transcriptional regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114542338|gb|EAU45367.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 255 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 ++LT+R+ L+ GDG T ++IA +GL+ T+ +L A L+ QA+AKA Sbjct: 188 QSLTKRQREALEWVGDGKTMQDIAAIMGLTQATIEKHLRLAREALNVETTAQAVAKA 244 >gi|332140533|ref|YP_004426271.1| putative LuxR-family transcriptional regulator [Alteromonas macleodii str. 'Deep ecotype'] gi|327550555|gb|AEA97273.1| putative LuxR-family transcriptional regulator [Alteromonas macleodii str. 'Deep ecotype'] Length = 198 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++LT RE L DG +++EIA +LG++ TV Y+G+ K A +RI + + F Sbjct: 132 KSLTNRERDVLSCILDGLSNKEIARELGITERTVKEYVGTLLNKFQAKDRISLLLRLGEF 191 Query: 232 GYI 234 ++ Sbjct: 192 SHL 194 >gi|258650774|ref|YP_003199930.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553999|gb|ACV76941.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 230 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 58/129 (44%), Gaps = 11/129 (8%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFK--K 166 A I +RLG G+++ TS ML + + A G +VI + + + Sbjct: 94 AAIDGALRLG--AAGFLLKTSPPEMLLDAIRRVAAGGGQLDPMVVPRVIAGYAAAPRMGE 151 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ LT RET LQL G+ + EIA L L TV +LG KL +R +AIA Sbjct: 152 RAPELDRLTPRETEVLQLVARGHNNAEIAALLHLGETTVKTHLGRVLDKLGLRDRNKAIA 211 Query: 227 KAIRFGYIC 235 A G + Sbjct: 212 FAYDSGLVT 220 >gi|298490276|ref|YP_003720453.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298232194|gb|ADI63330.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 240 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G ++ +IAEKL ++V TV ++ + KL A +R QA +A+R G Sbjct: 179 LTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 238 Query: 234 I 234 + Sbjct: 239 V 239 >gi|258510526|ref|YP_003183960.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477252|gb|ACV57571.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 231 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 3/81 (3%) Query: 155 QVITDFLELFKKR---SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++I +F + R S + LTERE LQ G +++EIA L +S +TV ++ Sbjct: 140 KMIAEFSRTAETRMPSSESVTELTEREREVLQYLSAGASNKEIARALFISENTVRNHVRH 199 Query: 212 ATVKLDAVNRIQAIAKAIRFG 232 KL NR QA A A+R G Sbjct: 200 ILDKLHLSNRAQAAAYAVRNG 220 >gi|271965654|ref|YP_003339850.1| ATPase-like protein [Streptosporangium roseum DSM 43021] gi|270508829|gb|ACZ87107.1| ATPase-like protein [Streptosporangium roseum DSM 43021] Length = 963 Score = 40.0 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R A +L+ R+ +LA G T++EIA ++ LS TV+ +LG+A K A +R + Sbjct: 896 RDGANDSLSARQQQVARLAAAGLTNQEIAREMFLSPKTVDKHLGAAMRKFGARSRTE 952 >gi|297196862|ref|ZP_06914259.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197711546|gb|EDY55580.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 856 Score = 40.0 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 32/64 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE S L+ T EI + LS++TV AY S KL +R A+A A Sbjct: 793 AEELTDRELSILRALQGSATQREIGAAMFLSINTVKAYNKSLYRKLGVASRQDAVAAARE 852 Query: 231 FGYI 234 G I Sbjct: 853 LGMI 856 >gi|329940979|ref|ZP_08290259.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329300273|gb|EGG44171.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 255 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ A LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + Sbjct: 187 TARAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRY 246 Query: 228 AIRFG 232 AI G Sbjct: 247 AIERG 251 >gi|325922114|ref|ZP_08183907.1| ATP-dependent transcriptional regulator [Xanthomonas gardneri ATCC 19865] gi|325547411|gb|EGD18472.1| ATP-dependent transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 923 Score = 40.0 bits (92), Expect = 0.23, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +ERE L GY++++IA L LS +TV +L + KLDA +R A+A+A++ G Sbjct: 849 FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRESALAQALQRGL 908 Query: 234 I 234 + Sbjct: 909 L 909 >gi|322374953|ref|ZP_08049467.1| DNA-binding response regulator [Streptococcus sp. C300] gi|321280453|gb|EFX57492.1| DNA-binding response regulator [Streptococcus sp. C300] Length = 199 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 41/73 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L+ G +++EIA++L LS TV Y+ + KLDA NR Sbjct: 127 ELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNR 186 Query: 222 IQAIAKAIRFGYI 234 +A A G++ Sbjct: 187 TEAANIAKESGWL 199 >gi|315093205|gb|EFT65181.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] Length = 218 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT RE +L G ++ +IAE+L +S TV ++ + +K D +R+Q +A A Sbjct: 145 SKAEQLTAREIEVAKLVARGLSNAQIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALA 204 Query: 229 IRFGYI 234 G I Sbjct: 205 YESGLI 210 >gi|297155229|gb|ADI04941.1| two-component regulator [Streptomyces bingchenggensis BCW-1] Length = 181 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G+T+ EIAE+L L+ TV +++ K+ A +R+Q + A G Sbjct: 117 RLTEREREVLTGVATGWTNTEIAERLCLAESTVKSHVSRILTKIGARDRVQVVIFAYDVG 176 Query: 233 YI 234 + Sbjct: 177 LV 178 >gi|237711747|ref|ZP_04542228.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] gi|229454442|gb|EEO60163.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] Length = 262 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +LT RE L+L G+ S+EIA+KL +S+HTV+ + + KL N ++AI Sbjct: 200 SLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLGVHNSLEAI 252 >gi|118470159|ref|YP_884886.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118171446|gb|ABK72342.1| transcriptional regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 272 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 2/60 (3%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA--KAIRF 231 LT RE L++ G T+ EIAE+L ++VHTV +++ + KL R QA A + +R+ Sbjct: 206 LTRREIEILRMLEAGRTNREIAEQLCIAVHTVKSHVHNLLAKLGVSTRAQAAALSRTMRY 265 >gi|120556773|ref|YP_961124.1| response regulator receiver protein [Marinobacter aquaeolei VT8] gi|120326622|gb|ABM20937.1| two component transcriptional regulator, LuxR family [Marinobacter aquaeolei VT8] Length = 301 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE+ L +G T+ EI + L +S TVN +L K++ NR A A AIR Sbjct: 239 DLTLRESDVLLWIANGKTNREIGQILEMSPRTVNKHLEQVFRKMNVENRTAAAANAIRV 297 >gi|226365530|ref|YP_002783313.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244020|dbj|BAH54368.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 228 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE LQL G ++ +I E+L +S TV ++ + KLD R +A+ +A + G Sbjct: 167 GLTERELEVLQLLAKGLSNAKIGERLFISATTVKFHVSNIMRKLDVGRRAEAVYEAGKLG 226 Query: 233 YI 234 I Sbjct: 227 LI 228 >gi|148271887|ref|YP_001221448.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829817|emb|CAN00738.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 226 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 55/115 (47%), Gaps = 9/115 (7%) Query: 129 NGYVIFTSEF--LMLANEVIIEAHGACYQVITD--FLELFKKRSSAARN-----LTERET 179 G+V+ +E + A + E A V T E ++R+++A + LT RE Sbjct: 111 RGFVLKDAEPEEFIQAMRALAEGRAALDGVTTRRVMAEFTRRRAASAVHPGTEVLTPREQ 170 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++L GDG +++EI +L + TV ++L KL +R+Q + R G + Sbjct: 171 DIVRLLGDGLSNDEIGGRLVIETSTVKSHLTRIMTKLGTRDRLQTVVWGYRSGLL 225 >gi|15675498|ref|NP_269672.1| putative two-component response regulator [Streptococcus pyogenes M1 GAS] gi|71911145|ref|YP_282695.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|13622694|gb|AAK34393.1| putative two-component response regulator [Streptococcus pyogenes M1 GAS] gi|71853927|gb|AAZ51950.1| two-component response regulator [Streptococcus pyogenes MGAS5005] Length = 213 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 148 LTAREYDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVGDRTQAVVYAFR 204 >gi|50084356|ref|YP_045866.1| putative transcriptional regulator [Acinetobacter sp. ADP1] gi|49530332|emb|CAG68044.1| putative transcriptional regulator, luxR family [Acinetobacter sp. ADP1] Length = 246 Score = 40.0 bits (92), Expect = 0.23, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 54/125 (43%), Gaps = 11/125 (8%) Query: 116 AGIAFPV--RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS----S 169 +G+ P+ R G G + F + L + C +T F E+ KRS Sbjct: 125 SGVQVPIFGRTGLE--GAISFAGKLSDLGADFRFILQSVC---VTAFREIQSKRSLNLLR 179 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE L+ G EIAE L +S TV +L S KL+ + QAIA A+ Sbjct: 180 ENSVLTQREKEILKWTAVGRKQSEIAEILKISERTVENHLRSIRKKLEVKSTGQAIASAL 239 Query: 230 RFGYI 234 G I Sbjct: 240 LKGEI 244 >gi|299137407|ref|ZP_07030589.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298600812|gb|EFI56968.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 206 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+ G +++ +AE+L +S TV ++ S KL A +R A+ A++ G+ Sbjct: 144 LSEREIEVLRSVASGNSNKLVAEQLAVSEATVKGHMKSILSKLGAQDRTHAVTIALKRGF 203 Query: 234 IC 235 I Sbjct: 204 IL 205 >gi|298252261|ref|ZP_06976064.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546853|gb|EFH80721.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1056 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ +E L L G ++ EIAE L +SV+TV ++ S KLD +RI+A A A R Sbjct: 996 LSTQEQRVLALLAAGRSNPEIAETLIISVNTVKGHVKSIYRKLDVNSRIEASAAASRLKL 1055 Query: 234 I 234 I Sbjct: 1056 I 1056 >gi|326775725|ref|ZP_08234990.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326656058|gb|EGE40904.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 213 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + A LT RE LQL G+G ++ +I+++L LS TV ++L KL +R Sbjct: 139 RLMDRMRTPAEALTRRELEVLQLVGEGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSR 198 Query: 222 IQAIAKA 228 A+A A Sbjct: 199 TSAVAAA 205 >gi|270293402|ref|ZP_06199611.1| DNA-binding response regulator [Streptococcus sp. M143] gi|270278251|gb|EFA24099.1| DNA-binding response regulator [Streptococcus sp. M143] Length = 199 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G +++EIA++L LS TV Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|260577934|ref|ZP_05845864.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] gi|258603954|gb|EEW17201.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] Length = 227 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE LQL G +++EIA+KL +S+ TV ++G K + +R+ A+ Sbjct: 157 LTPRELEILQLIALGLSNQEIADKLYISLPTVKTHVGRVLTKTQSRDRVHAV 208 >gi|111023025|ref|YP_705997.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110822555|gb|ABG97839.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 228 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE LQL G ++ +I E+L +S TV ++ + KLD R +A+ +A + G Sbjct: 167 GLTERELEVLQLLAKGLSNAKIGERLFISATTVKFHVSNIMRKLDVGRRAEAVYEAGKLG 226 Query: 233 YI 234 I Sbjct: 227 LI 228 >gi|29899136|gb|AAP03103.1| putative 2-component system response regulator [Streptomyces griseochromogenes] Length = 222 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A+ L+ERET ++ G T++E+A +L +S+ TV ++L + KL NR++ A A Sbjct: 152 AQQLSERETQVIRAIARGRTNQEVAAELFISLSTVKSHLATIQNKLQVRNRVEIAAWA 209 >gi|54025004|ref|YP_119246.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54016512|dbj|BAD57882.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 218 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + LA G +++EIAE++ +S T ++ A KL A +R Q + +A G Sbjct: 152 GLTTREREAVVLAARGLSNDEIAERMVISPLTAKTHINRAMTKLHARDRAQLVIRAYESG 211 Query: 233 YIC 235 + Sbjct: 212 LVA 214 >gi|294630642|ref|ZP_06709202.1| two-component system response regulator [Streptomyces sp. e14] gi|292833975|gb|EFF92324.1| two-component system response regulator [Streptomyces sp. e14] Length = 223 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 QRLTEREREVMTLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|237725811|ref|ZP_04556292.1| transcriptional regulator [Bacteroides sp. D4] gi|265753165|ref|ZP_06088734.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] gi|229435619|gb|EEO45696.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4] gi|263236351|gb|EEZ21846.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] Length = 256 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 34/53 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +LT RE L+L G+ S+EIA+KL +S+HTV+ + + KL N ++AI Sbjct: 194 SLTGREMEILRLIQRGFLSKEIADKLCISIHTVHIHRQNLLRKLGVHNSLEAI 246 >gi|255035483|ref|YP_003086104.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254948239|gb|ACT92939.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 207 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G GYT+++IA +L +S HTV ++ + K N + A G Sbjct: 146 LTRREKEILELIGQGYTTQQIAAELFISTHTVESHRKNLKEKFGVPNTATVVRMAAELGL 205 Query: 234 I 234 + Sbjct: 206 M 206 >gi|196230226|ref|ZP_03129089.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196225823|gb|EDY20330.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 211 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/73 (28%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 QV+ F E + + + +L+ RE L+L GY +EIA++L + + TV ++ + Sbjct: 133 QVVQHFHE-EGRLARESHHLSPREAEVLELLAAGYIYKEIADRLQIGLETVRTHVKNICA 191 Query: 215 KLDAVNRIQAIAK 227 K+ +R++A+A+ Sbjct: 192 KMHVRSRVEAVAR 204 >gi|182437898|ref|YP_001825617.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778534|ref|ZP_08237799.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178466414|dbj|BAG20934.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658867|gb|EGE43713.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 226 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L G ++ EIA +L LS TV ++G KL+ +R+Q + A G Sbjct: 158 KLTEREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYETG 217 Query: 233 YI 234 + Sbjct: 218 LV 219 >gi|159901290|ref|YP_001547537.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894329|gb|ABX07409.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 208 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 36/58 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L G G ++ EIA +L +++ TV ++ + KL A NR +A++ A+R Sbjct: 144 SLTPRELEVLHLLGRGRSNGEIALELDIALRTVKVHVQNILGKLGATNRTEAVSIAVR 201 >gi|148379355|ref|YP_001253896.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A str. ATCC 3502] gi|153934107|ref|YP_001383731.1| LuxR family DNA-binding response regulator [Clostridium botulinum A str. ATCC 19397] gi|153937750|ref|YP_001387280.1| LuxR family DNA-binding response regulator [Clostridium botulinum A str. Hall] gi|148288839|emb|CAL82923.1| two-component response regulator [Clostridium botulinum A str. ATCC 3502] gi|152930151|gb|ABS35651.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A str. ATCC 19397] gi|152933664|gb|ABS39163.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A str. Hall] gi|322805695|emb|CBZ03260.1| two-component response regulator [Clostridium botulinum H04402 065] Length = 217 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 20/115 (17%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--------VITDFL-------ELFKKRS 168 L F +GY++ S +NE+I E AC + V + + EL Sbjct: 96 LKFGASGYLLKDS-----SNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKELNDDDI 150 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S NLTERE + ++ +G +++EIAEK+ LS T+ + + KLD +R Q Sbjct: 151 SLRYNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQ 205 >gi|307706263|ref|ZP_07643077.1| competence protein A [Streptococcus mitis SK321] gi|307618354|gb|EFN97507.1| competence protein A [Streptococcus mitis SK321] Length = 198 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G T +++ +K+ +S TV+ +L + KL NR +AI A + GY Sbjct: 135 LTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVTNRQEAIHIAEQLGY 194 >gi|300741753|ref|ZP_07071774.1| two-component system response regulator [Rothia dentocariosa M567] gi|300380938|gb|EFJ77500.1| two-component system response regulator [Rothia dentocariosa M567] Length = 250 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ RE L+L G ++ EI+ L LS T+ ++ KLDA +R+QA+ A Sbjct: 187 QTLSPREHEVLRLIAQGLSNVEISRALVLSEATIKTHVSHVLAKLDARDRVQAVIMAYEA 246 Query: 232 GYIC 235 G + Sbjct: 247 GIVS 250 >gi|226305629|ref|YP_002765589.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184746|dbj|BAH32850.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 226 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Query: 143 NEVIIEAHGA--CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + +IEA Q + LE S LT RE L+ G ++ EIA K + Sbjct: 123 GDAVIEARATRRLLQHVGPLLEGSAPESQLPEELTPREVEVLEAMAYGLSNSEIAAKFHV 182 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV ++G K + +R+QA+ A + G + Sbjct: 183 SETTVKTHVGRVLSKTHSRDRVQAVVFAFQIGLV 216 >gi|156741128|ref|YP_001431257.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232456|gb|ABU57239.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 222 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 8/84 (9%) Query: 153 CYQVITDFLELFKKRSSAARN--------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 +V+ +FL L +A LTERE L+ G +++EIA L ++ T Sbjct: 130 ARKVVAEFLRLAVSAPAAPERMTPKSPNALTERELDVLKALARGMSNKEIAAALVITEGT 189 Query: 205 VNAYLGSATVKLDAVNRIQAIAKA 228 V ++ + KLD +R QA+ KA Sbjct: 190 VKTHISNILAKLDVRDRTQAVLKA 213 >gi|188990306|ref|YP_001902316.1| HTH-type transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|167732066|emb|CAP50258.1| HTH-type transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 921 Score = 40.0 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +ERE L GY++++IA L LS +TV +L + KLDA +R A+A+A++ G Sbjct: 849 FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNVYRKLDARSREGALAQALQRGL 908 Query: 234 I 234 + Sbjct: 909 L 909 >gi|91788405|ref|YP_549357.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91697630|gb|ABE44459.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 230 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+ GYTS EI +L +S TVN ++ + KL +R QA+ A G Sbjct: 169 KLSDREKEVLKAVAAGYTSGEIGSRLMISCQTVNTHIKNIYRKLQVRSRAQAVNFAAHRG 228 Query: 233 YI 234 + Sbjct: 229 LL 230 >gi|21232702|ref|NP_638619.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767223|ref|YP_241985.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|21114513|gb|AAM42543.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66572555|gb|AAY47965.1| transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] Length = 921 Score = 40.0 bits (92), Expect = 0.24, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +ERE L GY++++IA L LS +TV +L + KLDA +R A+A+A++ G Sbjct: 849 FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNVYRKLDARSREGALAQALQRGL 908 Query: 234 I 234 + Sbjct: 909 L 909 >gi|329938110|ref|ZP_08287561.1| two-component system regulator [Streptomyces griseoaurantiacus M045] gi|329302599|gb|EGG46489.1| two-component system regulator [Streptomyces griseoaurantiacus M045] Length = 223 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G G ++ EIA++L +S TV +L KLD +R QA+ A G Sbjct: 159 LTTREVEVLGLIGRGLSNLEIADRLYISEATVKTHLNRTMTKLDLDSRAQAVVVAYETGL 218 Query: 234 IC 235 + Sbjct: 219 VT 220 >gi|315612509|ref|ZP_07887422.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] gi|315315490|gb|EFU63529.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] Length = 199 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G +++EIA++L LS TV Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|312143766|ref|YP_003995212.1| transcriptional regulator, LuxR family [Halanaerobium sp. 'sapolanicus'] gi|311904417|gb|ADQ14858.1| transcriptional regulator, LuxR family [Halanaerobium sp. 'sapolanicus'] Length = 255 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K+S NLT+RE L+L G +++EIA +L +S++TV ++ K +RI+ I Sbjct: 190 KKSGNQYNLTDREKQVLKLIIQGMSNQEIAAELFISINTVKKHISHLFNKCKVSSRIELI 249 >gi|297243051|ref|ZP_06926989.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis AMD] gi|296889262|gb|EFH27996.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis AMD] Length = 217 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 37/60 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ +E+ ++L G +++EIA++L + V TVN +L KL +R+QA+A ++ + Sbjct: 156 LSPQESEIMRLCKQGSSTKEIADQLNVKVSTVNTHLRRIYGKLQVKSRMQALAALAKYSH 215 >gi|320011731|gb|ADW06581.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 223 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 33/67 (49%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LTERE L+L G ++ EIA L +S TV ++G KL +R+QA Sbjct: 152 PDALHTLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLSLRDRVQAAVY 211 Query: 228 AIRFGYI 234 A G + Sbjct: 212 AYESGLV 218 >gi|258424826|ref|ZP_05687700.1| response regulator [Staphylococcus aureus A9635] gi|257844990|gb|EEV69030.1| response regulator [Staphylococcus aureus A9635] gi|298694623|gb|ADI97845.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus ED133] Length = 200 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+ G+G +S+EI+EKL L+ TV Y KL A NR A KA G+ Sbjct: 140 LTPKEQIVLREIGNGLSSKEISEKLFLTDGTVRNYTSVIIDKLFADNRFDAWKKANEKGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|226364631|ref|YP_002782413.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226243120|dbj|BAH53468.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 222 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ A LTERET L+ G ++++IA KL LS TV ++ + KL NR++ Sbjct: 154 EQGPAVPKLTERETEVLRFVAKGLSAKQIATKLSLSHRTVENHVQATLRKLQLANRVELT 213 Query: 226 AKAIRFG 232 AI G Sbjct: 214 RYAIEQG 220 >gi|225875065|ref|YP_002756524.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] gi|225792729|gb|ACO32819.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] Length = 213 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT RET L++ G T++EI G+S +T ++ S KL+ +R +A AI Sbjct: 147 QELTRRETEILEMLAKGLTNKEIGRVFGISENTARNHVNSIIQKLEVSDRTEAATTAILR 206 Query: 232 GYI 234 G I Sbjct: 207 GII 209 >gi|149012406|ref|ZP_01833437.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147763462|gb|EDK70398.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] Length = 199 Score = 40.0 bits (92), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G +++EIA++L LS TV Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|326789547|ref|YP_004307368.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium lentocellum DSM 5427] gi|326540311|gb|ADZ82170.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium lentocellum DSM 5427] Length = 252 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +L+ERE +QL DG ++ EI EKL +S+ TV + + K NR Q + Sbjct: 196 DLSEREGEVVQLVNDGCSNSEIGEKLSISISTVKKHFYNIYNKTGVKNRTQLLV 249 >gi|297561441|ref|YP_003680415.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845889|gb|ADH67909.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 226 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ERE G ++ EIAE L +SV V A +G KLDA NR+ +A A+R Sbjct: 161 LSEREREVALAVSRGLSNTEIAEDLFMSVSNVKAVVGRVMAKLDAPNRVL-VANAVR 216 >gi|284028348|ref|YP_003378279.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283807641|gb|ADB29480.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 210 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 36/67 (53%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L K+ S LTERE L L G ++ E+A++L +S TV ++L KL R Sbjct: 134 LVKRAGSPGPVLTEREVEILGLLATGQSNRELAKRLFVSEATVKSHLSHIYTKLGVDTRA 193 Query: 223 QAIAKAI 229 A+A+AI Sbjct: 194 AAVARAI 200 >gi|254464427|ref|ZP_05077838.1| response regulator receiver protein, putative [Rhodobacterales bacterium Y4I] gi|206685335|gb|EDZ45817.1| response regulator receiver protein, putative [Rhodobacterales bacterium Y4I] Length = 211 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT L++ +G +EIAE LG+ + TV A +A LDA Q I++ I+FG Sbjct: 150 TLTTPVKDVLRMMCNGCKDQEIAENLGVKLETVRARRRTAMQALDAKTSAQLISQVIKFG 209 Query: 233 YI 234 I Sbjct: 210 LI 211 >gi|169630442|ref|YP_001704091.1| LuxR family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169242409|emb|CAM63437.1| Putative transcriptional regulator, LuxR family [Mycobacterium abscessus] Length = 889 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ +S+ + LT +E ++AG G T++EIA +L +S HTV +L K +R Q Sbjct: 826 KRSASSEKALTAQEAQIARMAGQGLTNQEIAAQLFISSHTVEWHLRKVFAKRGITSRRQ 884 >gi|84684208|ref|ZP_01012110.1| two-component response regulator [Maritimibacter alkaliphilus HTCC2654] gi|84667961|gb|EAQ14429.1| two-component response regulator [Rhodobacterales bacterium HTCC2654] Length = 215 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L L G + E+A +LGL+ TV Y+ + KL +R +A A R G Sbjct: 149 KLTDRETDVLALISRGLRNAEVARELGLAESTVAGYIKTIYRKLGISSRAEAAWHATRLG 208 >gi|330720530|gb|EGG98815.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [gamma proteobacterium IMCC2047] Length = 238 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%) Query: 163 LFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L KK + AA+ +L+ R+ L L G +++ IAE+LGL+ TV ++ KL+ N Sbjct: 162 LQKKVADAAQISSLSRRQLEVLGLIISGKSNQAIAEELGLTTPTVKMHVSGIFKKLNVSN 221 Query: 221 RIQAIAK 227 R +A+AK Sbjct: 222 RTEAVAK 228 >gi|317125782|ref|YP_004099894.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589870|gb|ADU49167.1| transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 978 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L +G ++ EI E+L LS +T ++ S K A NR +A A G Sbjct: 914 LTEREVDVLRLVAEGLSNREIGERLFLSANTAANHVRSILGKTAAPNRTKAAIFATEHGL 973 Query: 234 I 234 + Sbjct: 974 L 974 >gi|297161250|gb|ADI10962.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 238 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 G ++ TD R A R LTERE L+L G + ++IAE+L +S TV ++ Sbjct: 153 GEYRRLATDPAPAAPDRPVAPR-LTEREKEVLRLVAKGLSYKQIAERLVISHRTVQNHVQ 211 Query: 211 SATVKLDAVNRIQAIAKAIRFG 232 + KL NR++ + AI G Sbjct: 212 NTLGKLQLHNRVELVRYAIERG 233 >gi|225872958|ref|YP_002754415.1| two-component system regulatory protein [Acidobacterium capsulatum ATCC 51196] gi|225792212|gb|ACO32302.1| two-component system regulatory protein [Acidobacterium capsulatum ATCC 51196] Length = 216 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L+ G ++ IAE+L +S TV +++ + KL A +R A+ A+R GY Sbjct: 152 LSKRELEILRQVAAGLPNKLIAERLSISPDTVKSHIANILSKLGANDRTHAVTLAVRRGY 211 >gi|209523263|ref|ZP_03271819.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209496414|gb|EDZ96713.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 220 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 9/73 (12%) Query: 160 FLELFKKRSSAARN---------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 F ++ RS A+R+ LT RE L+L G GY++ EIA++L +S TV ++ Sbjct: 130 FEKVMAARSKASRDEPLPDNLQDLTPRELEVLRLIGKGYSNREIAQELFISERTVKNHVS 189 Query: 211 SATVKLDAVNRIQ 223 S L+ +R Q Sbjct: 190 SILSSLNLRDRTQ 202 >gi|254446726|ref|ZP_05060201.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198256151|gb|EDY80460.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 222 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQ +G+++++IAE L +SV T+ A+ + KLDA + ++ A G Sbjct: 147 LSNREREVLQAVAEGFSTKQIAEMLEVSVKTIEAHRANLMKKLDARSAVELTRCAFELGI 206 Query: 234 I 234 I Sbjct: 207 I 207 >gi|297193492|ref|ZP_06910890.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718233|gb|EDY62141.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L + G G+T+ EIA + L+ TV ++ K A +R+QA+ Sbjct: 160 RLTEREREILTVIGQGWTNTEIASRFHLAESTVKTHVSRILAKTGARDRVQAV 212 >gi|297583338|ref|YP_003699118.1| LuxR family transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141795|gb|ADH98552.1| transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 232 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+ E LQL DG+ + +IAE + L+ TV+ + KL A +R A+ + I+ G Sbjct: 167 HLTKNEKQVLQLVLDGHNNRKIAELMFLAPSTVSTTISHLLKKLGANDRTDAMVQLIKRG 226 Query: 233 YI 234 ++ Sbjct: 227 WV 228 >gi|187922148|ref|YP_001893790.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187713342|gb|ACD14566.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 206 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 35/68 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A+R LT + CL G TS EIA+ LG S +TV+ ++G A L+ +R A Sbjct: 137 RCRASRLLTPCQIVCLTWVARGKTSAEIAKILGRSHYTVDYHIGKAMQALNMCSRTAAAV 196 Query: 227 KAIRFGYI 234 A G I Sbjct: 197 YASVQGII 204 >gi|288574415|ref|ZP_06392772.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570156|gb|EFC91713.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 211 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L A G +S+E+A L +S TV +L S KL A N+ +A+ A+++G Sbjct: 143 DLSPREREVLLFAARGLSSKEVASHLFISERTVQTHLASIYDKLGAHNKTEAMLLALKYG 202 Query: 233 YIC 235 + Sbjct: 203 LLT 205 >gi|224476907|ref|YP_002634513.1| putative two-component response regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222421514|emb|CAL28328.1| putative two-component response regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 209 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 38/79 (48%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 ++E + + + +E K+ L+ RET L+ G T++EIAE L +S TV Sbjct: 121 VLEGNKIIHPEVQKVIEDVAKKPHHINKLSNRETEVLKEMAKGKTNKEIAEALYVSEKTV 180 Query: 206 NAYLGSATVKLDAVNRIQA 224 ++ KL +R QA Sbjct: 181 KTHVSHIFSKLQVTDRTQA 199 >gi|170728356|ref|YP_001762382.1| ATP-dependent transcription regulator LuxR [Shewanella woodyi ATCC 51908] gi|169813703|gb|ACA88287.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Shewanella woodyi ATCC 51908] Length = 896 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 4/64 (6%) Query: 166 KRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 K+S A+N L+ RE L G+T+++I+ LG+S +TV +L + KL +NR Sbjct: 826 KKSHQAQNNPWHLSSREQQICPLLSQGFTNKQISTTLGISENTVKFHLKNLFQKLGVINR 885 Query: 222 IQAI 225 QA+ Sbjct: 886 QQAV 889 >gi|110833289|ref|YP_692148.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis SK2] gi|110646400|emb|CAL15876.1| DNA-binding response regulator, LuxR family [Alcanivorax borkumensis SK2] Length = 216 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K S + +LT+RE L++ G + +IA L LS HT+ ++ + K++A NR+QA Sbjct: 149 KTFSRSEVSLTDREVEVLKVMATGAKNSDIACSLNLSPHTIKTHIYNIFKKINASNRLQA 208 Query: 225 I 225 + Sbjct: 209 V 209 >gi|58425447|gb|AAW74484.1| transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] Length = 1005 Score = 40.0 bits (92), Expect = 0.25, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +ERE L GY++++IA +L LS +TV +L + KLDA +R A+A+A Sbjct: 929 FSERELEVLAQLARGYSNKQIARRLHLSENTVKFHLKNLYRKLDARSRESALAQA 983 >gi|328885463|emb|CCA58702.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 222 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 10/117 (8%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNL---TERE 178 +G+++ +E + L + V + A G ++I +F ++R + L TERE Sbjct: 101 SGFLVKDTEPMELLHAVRVVARGDALIAPAVTRRLIAEFAGRAERRPDPSPRLNALTERE 160 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L G G +++EIA +L LS T ++ KL +R Q + A G I Sbjct: 161 REVLGLVGAGLSNDEIAGRLVLSPATAKTHVSRIMTKLAVRDRAQLVILAYESGMIT 217 >gi|311696551|gb|ADP99424.1| two-component response regulator [marine bacterium HP15] Length = 279 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 30/58 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE+ L +G T+ EI + L +S TVN +L KL NR A A AIR Sbjct: 218 LTLRESDVLLWIANGKTNREIGQILDMSPRTVNKHLEQVFRKLGVENRTAAAASAIRL 275 >gi|307330474|ref|ZP_07609617.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883899|gb|EFN14942.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + A Sbjct: 159 PAVPQLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYA 218 Query: 229 IRFG 232 I G Sbjct: 219 IERG 222 >gi|319762877|ref|YP_004126814.1| regulatory protein luxr [Alicycliphilus denitrificans BC] gi|330824956|ref|YP_004388259.1| two component LuxR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117438|gb|ADU99926.1| regulatory protein LuxR [Alicycliphilus denitrificans BC] gi|329310328|gb|AEB84743.1| two component transcriptional regulator, LuxR family [Alicycliphilus denitrificans K601] Length = 264 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 14/110 (12%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA-----------RNLT 175 GY++ S F V+ A+G + L+ F + ++ A L+ Sbjct: 146 GYLVKNSWFGSYPQAVLQVANGGASITPHLARRLLQRFDRAAAPATHEQQQDERETERLS 205 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +RE L++ GYTS EI +L +S TVN ++ + KL R QA+ Sbjct: 206 QREKEVLRMVASGYTSAEIGTRLLISSLTVNTHIKNIYRKLQVRTRAQAV 255 >gi|332668949|ref|YP_004451957.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332337987|gb|AEE44570.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 226 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L+L +G ++ EIA +L +S TV ++G+ KL A +R+QA+ Sbjct: 160 LTPRELDVLRLVAEGASNVEIAAELVVSEATVKTHVGNVFAKLGARDRVQAV 211 >gi|318060318|ref|ZP_07979041.1| LuxR family two component transcriptional regulator [Streptomyces sp. SA3_actG] gi|318079909|ref|ZP_07987241.1| LuxR family two component transcriptional regulator [Streptomyces sp. SA3_actF] Length = 222 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L L +G T+ +IA +LG+ TV A++ L+ NR+QA Sbjct: 155 LTPRERDVLALLAEGETNADIARRLGMRESTVKAHVSRILTALEVTNRVQA 205 >gi|299531936|ref|ZP_07045336.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|298720111|gb|EFI61068.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 214 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE L+L DG T+ EIAE L LS +TV ++ + KL +R +A+++A Sbjct: 153 LSAREIQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEA 207 >gi|264680819|ref|YP_003280729.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|262211335|gb|ACY35433.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] Length = 214 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE L+L DG T+ EIAE L LS +TV ++ + KL +R +A+++A Sbjct: 153 LSAREIQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEA 207 >gi|256420108|ref|YP_003120761.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256035016|gb|ACU58560.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 234 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 35/69 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K LT RE L+L G ++EIA +L LS +T+ + + +KL N + Sbjct: 165 RKHEDLISKLTPREKDILKLTVKGLNNKEIAAELNLSRYTIETHRKNIRIKLKVRNTTEL 224 Query: 225 IAKAIRFGY 233 IA A + GY Sbjct: 225 IALARKVGY 233 >gi|284032185|ref|YP_003382116.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811478|gb|ADB33317.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 222 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++ EI ++LG++ TV ++ + KLDA +R+QA A G Sbjct: 153 RLTPREREVLALLAAGRSNAEIGDELGVATGTVKTHVNALLSKLDARDRVQATIIAYDTG 212 Query: 233 YI 234 + Sbjct: 213 LV 214 >gi|240145753|ref|ZP_04744354.1| nitrate/nitrite response regulator protein NarL [Roseburia intestinalis L1-82] gi|257202169|gb|EEV00454.1| nitrate/nitrite response regulator protein NarL [Roseburia intestinalis L1-82] gi|291536999|emb|CBL10111.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Roseburia intestinalis M50/1] Length = 213 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 6/112 (5%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTERETSCL 182 NGY++ SE L ++ +G Y V+ + SS +LT RE L Sbjct: 100 NGYLLKDSESAELKKAILAVVNGEDYIQPSLIPVLNSKMLDRDSDSSKIESLTRRELEVL 159 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ G ++EIAE L +S TV ++ + K+ +R QA AIR I Sbjct: 160 KMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRTQAAVFAIRNNLI 211 >gi|119513102|ref|ZP_01632155.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119462236|gb|EAW43220.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 240 Score = 40.0 bits (92), Expect = 0.25, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 38/61 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G ++ +IAEKL ++V TV ++ + KL A +R QA +A+R G Sbjct: 179 LTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSGL 238 Query: 234 I 234 + Sbjct: 239 V 239 >gi|330828126|ref|YP_004391078.1| putative csgAB operon transcriptional regulatory protein [Aeromonas veronii B565] gi|328803262|gb|AEB48461.1| Probable csgAB operon transcriptional regulatory protein [Aeromonas veronii B565] Length = 215 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 4/81 (4%) Query: 155 QVITDFLELFKKRSS-AARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ + +E +++ +S RN LT RE ++ G ++ EIA+ L +S HTV ++L Sbjct: 128 HLLCELVEYYRQGNSYLQRNDTLLTAREQEIIRYLMTGASNVEIADSLFVSEHTVKSHLY 187 Query: 211 SATVKLDAVNRIQAIAKAIRF 231 + KL+ NRIQA++ A + Sbjct: 188 NVFKKLNVKNRIQAVSWAKEY 208 >gi|293364262|ref|ZP_06610988.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307702507|ref|ZP_07639461.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|291317108|gb|EFE57535.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307623919|gb|EFO02902.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] Length = 199 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G +++EIA++L LS TV Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|289168290|ref|YP_003446559.1| response regulator [Streptococcus mitis B6] gi|288907857|emb|CBJ22697.1| response regulator [Streptococcus mitis B6] Length = 198 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G T +++ +K+ +S TV+ +L + KL NR +AI A + GY Sbjct: 135 LTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVANRQEAIHIAEQLGY 194 >gi|256393385|ref|YP_003114949.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359611|gb|ACU73108.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 206 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 161 LELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 LEL SA N LT+RE L A DG ++ IA +L LS TV YL A K A Sbjct: 132 LELAVAALSAVDNPLTDREREVLVKAMDGSPTKAIAAELFLSNGTVRNYLSRAISKTGAR 191 Query: 220 NRIQAIAKAIRFGYI 234 +RI+A+ A G+I Sbjct: 192 SRIEAVRIARDEGWI 206 >gi|226225845|ref|YP_002759951.1| putative NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226089036|dbj|BAH37481.1| putative NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 231 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L++ +GYT+ EI E L +S TV+ Y KL +R + A++ G Sbjct: 166 KLTDREQVVLKMVAEGYTAPEIGEHLTISPKTVDTYKQRIGEKLGLTHRTDYVKFALKLG 225 Query: 233 YI 234 + Sbjct: 226 LL 227 >gi|124005623|ref|ZP_01690462.1| DNA-binding response regulator, LuxR family [Microscilla marina ATCC 23134] gi|123988691|gb|EAY28297.1| DNA-binding response regulator, LuxR family [Microscilla marina ATCC 23134] Length = 222 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 9/84 (10%) Query: 155 QVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 Q++ D L+ +KR+ A+ N+T RE L+L YT++EIA++L +S+HTV Sbjct: 135 QIMLDGLK--RKRNFVAKPKIDGQVNITPREQEVLELILKEYTTQEIADRLFVSIHTVET 192 Query: 208 YLGSATVKLDAVNRIQAIAKAIRF 231 + K N + + +A++ Sbjct: 193 HRKKLFNKFGVKNVVGLVVRALQM 216 >gi|111022138|ref|YP_705110.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821668|gb|ABG96952.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 222 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITD-----FLELFKKRSSAARN--------LT 175 +GY++ ++ + L + V A A V T L +++ SSA + LT Sbjct: 106 SGYLVKSASVVELLDAV--RATAAGQAVFTPGLAGLVLGEYRRMSSAPADEQGLAVPRLT 163 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ERET L+ G ++++IA KL LS TV ++ + KL NR++ AI G Sbjct: 164 ERETEVLRFVAKGLSAKQIATKLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQG 220 >gi|330467719|ref|YP_004405462.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810690|gb|AEB44862.1| two component transcriptional regulator, LuxR family protein [Verrucosispora maris AB-18-032] Length = 211 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + ++LTERE L+L GY++ EIA L L+ TV ++ KL A +R A+ + Sbjct: 144 APTVQSLTEREREVLRLVAHGYSNREIAGALFLAEGTVKNHVSMILTKLGARDRTNAVLR 203 Query: 228 AIRFGYI 234 A+ G + Sbjct: 204 ALHEGIL 210 >gi|326330390|ref|ZP_08196699.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|326330395|ref|ZP_08196703.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|325951670|gb|EGD43702.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|325951816|gb|EGD43847.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] Length = 363 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 32/54 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+L G T+ IA +L +S TV +++ KL AVNR QAIA+ Sbjct: 304 LTSRERDVLELMAVGATNPMIASELVISASTVKSHVRHILRKLGAVNRAQAIAR 357 >gi|322412404|gb|EFY03312.1| Two-component response regulator yvqC [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 213 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 148 LTAREYDILYLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFR 204 >gi|320449777|ref|YP_004201873.1| response regulator receiver [Thermus scotoductus SA-01] gi|320149946|gb|ADW21324.1| response regulator receiver [Thermus scotoductus SA-01] Length = 198 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L++RE + + L GYT ++AE+LG+SV T + Y G A KL Sbjct: 138 LSDRERAVVALLAQGYTLSQVAERLGISVKTASTYKGRALNKL 180 >gi|322437503|ref|YP_004219593.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321165396|gb|ADW71099.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 207 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L+ +R+ A +LT RE+ L G +++EIA++LG++ TV ++ S K+ A + Sbjct: 132 LDRLAERTPAV-DLTPRESEVLVCITQGRSNQEIADELGIAEKTVRIHVSSLLDKMGARD 190 Query: 221 RIQAIAKAIRFGYI 234 R QA A++ G + Sbjct: 191 RTQATIYALQRGLV 204 >gi|302552999|ref|ZP_07305341.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] gi|302470617|gb|EFL33710.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] Length = 221 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 54/109 (49%), Gaps = 13/109 (11%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLEL------FKKRSSAARNLT 175 +G+++ + LA+ V + A G ++IT+F +L +A +LT Sbjct: 100 SGFLLKDASARQLADGVRVVASGEALLAPSVTRRLITEFSKLSETPRLMPSAQAAYGDLT 159 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ERET L L G ++ EIAE+L ++ T+ ++ VKL +R QA Sbjct: 160 ERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLRDRTQA 208 >gi|256396212|ref|YP_003117776.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362438|gb|ACU75935.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 241 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T+RE L L G G ++ EIAE+L +S T A++ KL A +R+Q + A G Sbjct: 176 GVTDREREVLTLVGRGLSNGEIAEELFISAATAKAHVARLFTKLGARDRVQLVITAYEAG 235 Query: 233 YIC 235 + Sbjct: 236 LVA 238 >gi|296132098|ref|YP_003639345.1| transcriptional regulator, LuxR family [Thermincola sp. JR] gi|296030676|gb|ADG81444.1| transcriptional regulator, LuxR family [Thermincola potens JR] Length = 285 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L G T+ EIA +G+SV TV Y KL N+I + KA G Sbjct: 223 TLSNRERQIFSLIAKGQTAGEIAGTIGISVTTVKTYRKRIYKKLGIKNKIDCLNKARELG 282 Query: 233 YI 234 Y+ Sbjct: 283 YL 284 >gi|317129803|ref|YP_004096085.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474751|gb|ADU31354.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 210 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L +G ++EIA++L +++ TV ++ + KL+ +R QA+ A + Sbjct: 148 QLTEREMEVLKLMTEGKANQEIADELYIALKTVKVHVSNILNKLEVHDRTQAVIYAFKNN 207 Query: 233 YI 234 I Sbjct: 208 LI 209 >gi|269960068|ref|ZP_06174445.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835367|gb|EEZ89449.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 225 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 32/60 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G ++ EI+ L +S TV +L + KLD NR A++KAI G+ Sbjct: 163 LTTRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLDVHNRTHAVSKAIELGW 222 >gi|302518123|ref|ZP_07270465.1| two-component system response regulator [Streptomyces sp. SPB78] gi|318059111|ref|ZP_07977834.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079115|ref|ZP_07986447.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|333028198|ref|ZP_08456262.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|302427018|gb|EFK98833.1| two-component system response regulator [Streptomyces sp. SPB78] gi|332748050|gb|EGJ78491.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 223 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 36/70 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ S + LTERE L+L G ++ EIA L +S TV ++G KL +R+QA Sbjct: 149 EQPPSTLQTLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQA 208 Query: 225 IAKAIRFGYI 234 A G + Sbjct: 209 AVFAYESGLV 218 >gi|23098524|ref|NP_691990.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776750|dbj|BAC13025.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 215 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L G G T++EIA++L L++ TV Y+ S K + +R Q A+R G Sbjct: 152 QLSERERVITALIGSGLTNKEIADELFLTIGTVKNYITSILQKTEQRDRTQLAIFAVRHG 211 >gi|330878281|gb|EGH12430.1| transcriptional regulator PsyR [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 247 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RET L+ G EIAE +S TV ++ + + KL+ QA+ KAI+ G Sbjct: 186 KLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAVYKAIKMG 245 Query: 233 YI 234 + Sbjct: 246 MV 247 >gi|326444132|ref|ZP_08218866.1| transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 201 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L LA +G + IA L L+ TV YL +A K A NR+ AI + FG+ Sbjct: 141 LSARELRVLALAAEGESVSSIANALHLASGTVRNYLAAAIRKTGARNRLDAIRLSREFGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|321157306|emb|CBW39288.1| Response regulator [Streptococcus pneumoniae] Length = 198 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G T +++ +K+ +S TV+ +L + KL NR +AI A + GY Sbjct: 135 LTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVTNRQEAIHIAEQLGY 194 >gi|282860391|ref|ZP_06269457.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564127|gb|EFB69663.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 222 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +LTERE L + G G+T+ EIA +L L+ TV ++ K + +R+QA+ Sbjct: 158 SLTEREREILTVIGQGWTNTEIATRLHLAESTVKTHVTRILAKTGSRDRVQAV 210 >gi|239945308|ref|ZP_04697245.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239991767|ref|ZP_04712431.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291448770|ref|ZP_06588160.1| two component system DNA binding response regulator [Streptomyces roseosporus NRRL 15998] gi|291351717|gb|EFE78621.1| two component system DNA binding response regulator [Streptomyces roseosporus NRRL 15998] Length = 217 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + A LT RE LQL G+G ++ +I+++L LS TV ++L KL +R Sbjct: 143 RLMDRMRTPAEALTRRELEVLQLVGEGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSR 202 Query: 222 IQAIAKA 228 A+A A Sbjct: 203 TSAVAAA 209 >gi|84685343|ref|ZP_01013241.1| DNA-binding response regulator, LuxR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84666500|gb|EAQ12972.1| DNA-binding response regulator, LuxR family protein [Rhodobacterales bacterium HTCC2654] Length = 203 Score = 40.0 bits (92), Expect = 0.26, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 2/85 (2%) Query: 141 LANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 L N V A G Y V DF+ ++ + A L ERE L+ +G +++EIA L Sbjct: 110 LVNAVRFMAMGEQY-VPVDFMTAKEEAKHPLAEKLAEREMQVLKGLTEGKSNKEIARDLD 168 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQA 224 L+ T+ YL + K+D NR QA Sbjct: 169 LTEPTIKLYLKTLYRKIDVNNRTQA 193 >gi|262089625|gb|ACY24722.1| NarL-family response regulator [uncultured organism] Length = 205 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L GY+ + A +LG++ +T +YL + KL+ +R +A KAI G Sbjct: 145 LSAREHKLLALVARGYSVQRAANELGITYNTAASYLKNVYQKLEVGSRAEATRKAIHMGL 204 Query: 234 I 234 + Sbjct: 205 V 205 >gi|326776667|ref|ZP_08235932.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326657000|gb|EGE41846.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 225 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LTERET L L G ++ EI+ +L ++ TV ++G VKL +R QA A Sbjct: 158 KELTERETEVLTLIAGGLSNAEISRQLIVAEQTVKTHVGRILVKLGVRDRTQAAVFAYES 217 Query: 232 GYI 234 G + Sbjct: 218 GLV 220 >gi|258622070|ref|ZP_05717096.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258585394|gb|EEW10117.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 224 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L G ++ EI+ L +S TV +L + KL+ NR AIAKAI G+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221 >gi|163735511|ref|ZP_02142943.1| DNA-binding response regulator, LuxR family protein [Roseobacter litoralis Och 149] gi|161391131|gb|EDQ15468.1| DNA-binding response regulator, LuxR family protein [Roseobacter litoralis Och 149] Length = 221 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 42/75 (56%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A +++ FL++ + +S L+ +E + L G T+ E+A++L +S +TV +L + Sbjct: 128 AAGKMVFPFLDVRELQSDPIHLLSRKERATLDALSKGLTNRELAKELSISTNTVKFHLTN 187 Query: 212 ATVKLDAVNRIQAIA 226 KL NR QAIA Sbjct: 188 LYEKLSVKNRAQAIA 202 >gi|154685055|ref|YP_001420216.1| YdfI [Bacillus amyloliquefaciens FZB42] gi|154350906|gb|ABS72985.1| YdfI [Bacillus amyloliquefaciens FZB42] Length = 211 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 156 VITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++ F E+ +R++A LT++E L+ G+ S+ IA LG+S TV A L S Sbjct: 128 ILRRFREMKMERANANETQLTDKEIIVLEAVAQGHKSKAIAFDLGISERTVKARLTSIYN 187 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL A +R +A+ A++ G + Sbjct: 188 KLGADSRTEAVTIAMQKGIL 207 >gi|21231619|ref|NP_637536.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768259|ref|YP_243021.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991396|ref|YP_001903406.1| Two-component system regulatory protein, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|21113311|gb|AAM41460.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573591|gb|AAY49001.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733156|emb|CAP51354.1| Two-component system regulatory protein, LuxR family [Xanthomonas campestris pv. campestris] Length = 213 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RET L L G ++++I LG+S TV A++ + KL +R A+ A+R G Sbjct: 149 LSARETEVLNLVATGCSNKQIGNALGISEETVKAHMKNILCKLGVRDRTHAVTVALRRGI 208 Query: 234 I 234 + Sbjct: 209 L 209 >gi|20808107|ref|NP_623278.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|254479031|ref|ZP_05092387.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|20516692|gb|AAM24882.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] gi|214035027|gb|EEB75745.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 208 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 15/110 (13%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDF-LELFKKRSSAARNL 174 ++LG GY++ +E+ L V +G Y Q I D EL +K L Sbjct: 94 LKLGVE--GYILKDAEYDDLIKAVRTIYNGGVYIHPSLMQEIEDSNEELLRKE------L 145 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 T RE L+L GY+++EIA+KL LS TV ++ + KL +R QA Sbjct: 146 TPREIEILKLLSQGYSNKEIAQKLFLSEKTVKNHVYNIFRKLGVKDRTQA 195 >gi|60683534|ref|YP_213678.1| transcriptional regulator GerE [Bacteroides fragilis NCTC 9343] gi|60494968|emb|CAH09784.1| putative transcriptional regulator GerE, LuxR family [Bacteroides fragilis NCTC 9343] Length = 278 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA- 224 ++ +R L++RE + LQL G TS EIA +L +S +TV+ + + KL N I+A Sbjct: 209 EKQDCSRLLSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEAC 268 Query: 225 -IAKAIRF 231 IAK ++ Sbjct: 269 RIAKELKL 276 >gi|332523779|ref|ZP_08400031.1| response regulator receiver domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332315043|gb|EGJ28028.1| response regulator receiver domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 198 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL ++ + + L+ RE + L G ++ EIA+KL LS TV YL KL+A NR Sbjct: 126 ELIEEVTFSTNPLSPREQEVMSLVVQGASNHEIAQKLFLSNGTVRNYLTCVFTKLNANNR 185 Query: 222 IQAIAKAIRFGYI 234 +A G+I Sbjct: 186 TEAAKIVQEKGWI 198 >gi|288917777|ref|ZP_06412139.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288350833|gb|EFC85048.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 308 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE + L+L +G+ ++EI +L S TV L T + NR A+A A+R G Sbjct: 247 GLSERELTVLRLVAEGHDTQEIGRRLNYSERTVKNVLQDVTRRFGLRNRSHAVAFALRQG 306 Query: 233 YI 234 + Sbjct: 307 LL 308 >gi|118471285|ref|YP_888706.1| regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118172572|gb|ABK73468.1| putative regulatory protein [Mycobacterium smegmatis str. MC2 155] Length = 943 Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LT+ E + +QL +G T+ +AE L LS HTV ++ +A KL +R Q Sbjct: 884 SLTDSELTVVQLIAEGATNRAVAEHLQLSPHTVKTHVRNAFAKLGVTSRAQ 934 >gi|75910296|ref|YP_324592.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704021|gb|ABA23697.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 237 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L DG ++ IAEKL +SV TV ++ + KL +R Q +A+R G Sbjct: 176 LTRRELDVLKLIVDGCSNAVIAEKLYVSVGTVKTHVRNILNKLCVSDRTQIAVRALRAGL 235 Query: 234 IC 235 + Sbjct: 236 VA 237 >gi|120597637|ref|YP_962211.1| response regulator receiver protein [Shewanella sp. W3-18-1] gi|146294224|ref|YP_001184648.1| response regulator receiver protein [Shewanella putrefaciens CN-32] gi|120557730|gb|ABM23657.1| transcriptional regulator, LuxR family [Shewanella sp. W3-18-1] gi|145565914|gb|ABP76849.1| transcriptional regulator, LuxR family [Shewanella putrefaciens CN-32] Length = 209 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 19/188 (10%) Query: 42 LDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS 101 LD RR + LD+ IP + + HF L + S+ +E+ + Sbjct: 29 LDKSRRSFYLITQKGSALDNKGIPLL-----ASRLVSHFPVALYQVERDSLDQESAM--- 80 Query: 102 GQLSVRLEGGLLPFAGIAFP-VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF 160 LL GI F R+ G +E L ++ + Q + Sbjct: 81 ----------LLGIRGILFADQRMDLMLTGLRKMVAEELWYDRTLLSKMFRRVVQKLEGN 130 Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 E+ + + LT RE + +Q G ++EIA +L +S HTV A++ S K + N Sbjct: 131 NEMPSDTVAMLQMLTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRN 190 Query: 221 RIQAIAKA 228 R++ + A Sbjct: 191 RVELLRWA 198 >gi|315605340|ref|ZP_07880383.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315312909|gb|EFU60983.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 232 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ A LT RET L+ G T +IA L LS TV ++ SA +K+DA R +A + Sbjct: 166 SAGASPLTARETDVLREVEGGGTIADIAHALTLSQGTVRNHVSSAMLKMDARTRAEAASL 225 Query: 228 AIRFGYI 234 A G++ Sbjct: 226 ARSAGWL 232 >gi|311900005|dbj|BAJ32413.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 223 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G ++ EIA +L +S TV ++G KL +R+QA A G Sbjct: 158 LTEREVEVLRLVARGLSNAEIAAELFVSETTVKTHVGHVLTKLQLRDRVQAAVYAYESGL 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|302536520|ref|ZP_07288862.1| predicted protein [Streptomyces sp. C] gi|302445415|gb|EFL17231.1| predicted protein [Streptomyces sp. C] Length = 224 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A L+ RE L L ++ +IA +LG++ TV +L + KL+AV+R+ A+ K Sbjct: 148 APAPSGLSPREREVLTLVAHAMSNRQIASELGVAEGTVKRHLRNIFEKLEAVSRVDAVNK 207 Query: 228 AI 229 AI Sbjct: 208 AI 209 >gi|225155470|ref|ZP_03723961.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224803771|gb|EEG22003.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 225 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LE R+ +++LT RE LQL +G ++++A +LG+S+ TV + KLD Sbjct: 143 LETGTPRAKPSQSLTTREAEVLQLVAEGAANKQVAAELGISIKTVEKHRQQLMNKLD 199 >gi|217972053|ref|YP_002356804.1| LuxR family transcriptional regulator [Shewanella baltica OS223] gi|217497188|gb|ACK45381.1| transcriptional regulator, LuxR family [Shewanella baltica OS223] Length = 221 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE + +Q G ++EIA +L +S HTV A++ S K + NR++ + A Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210 >gi|148821388|ref|YP_001286142.1| LuxR family two component transcriptional regulator [Mycobacterium tuberculosis F11] gi|167970318|ref|ZP_02552595.1| transcriptional regulator, LuxR family protein [Mycobacterium tuberculosis H37Ra] gi|215406188|ref|ZP_03418369.1| LuxR family two component transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215414060|ref|ZP_03422719.1| LuxR family two component transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215425401|ref|ZP_03423320.1| LuxR family two component transcriptional regulator [Mycobacterium tuberculosis T92] gi|215433115|ref|ZP_03431034.1| LuxR family two component transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|215448474|ref|ZP_03435226.1| LuxR family two component transcriptional regulator [Mycobacterium tuberculosis T85] gi|218755931|ref|ZP_03534727.1| LuxR family two component transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|219555992|ref|ZP_03535068.1| LuxR family two component transcriptional regulator [Mycobacterium tuberculosis T17] gi|253797117|ref|YP_003030118.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 1435] gi|254233582|ref|ZP_04926908.1| hypothetical protein TBCG_00193 [Mycobacterium tuberculosis C] gi|254366646|ref|ZP_04982690.1| hypothetical two component transcriptional regulatory protein (probably luxR-family) [Mycobacterium tuberculosis str. Haarlem] gi|254549134|ref|ZP_05139581.1| two component system transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289552447|ref|ZP_06441657.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 605] gi|289747962|ref|ZP_06507340.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|308394867|ref|ZP_07491786.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu012] gi|124603375|gb|EAY61650.1| hypothetical protein TBCG_00193 [Mycobacterium tuberculosis C] gi|134152158|gb|EBA44203.1| hypothetical two component transcriptional regulatory protein (probably luxR-family) [Mycobacterium tuberculosis str. Haarlem] gi|148719915|gb|ABR04540.1| two component transcriptional regulatory protein, luxR-family [Mycobacterium tuberculosis F11] gi|253318620|gb|ACT23223.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 1435] gi|289437079|gb|EFD19572.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 605] gi|289688490|gb|EFD55978.1| transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|308367544|gb|EFP56395.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu012] gi|323717184|gb|EGB26393.1| two component system transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326905951|gb|EGE52884.1| two component system transcriptional regulator [Mycobacterium tuberculosis W-148] gi|328456904|gb|AEB02327.1| two component system transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 232 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A L ERE + L+L DG ++ ++A +L T+ + +L NR A+A Sbjct: 166 TPCAAALAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAH 225 Query: 228 AIRFGYI 234 A+R G I Sbjct: 226 ALRAGLI 232 >gi|298246164|ref|ZP_06969970.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553645|gb|EFH87510.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 465 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%) Query: 165 KKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++R AR+ LT RE L+L G ++EIA +L +S TVN +L + K++ R Sbjct: 391 RERERGARSEVLTTRELEVLRLLVRGLRNKEIAARLYVSERTVNFHLANIYQKMNVSGRT 450 Query: 223 QAIAKAIRFGYI 234 +A++KA+ G + Sbjct: 451 EALSKALAQGLV 462 >gi|297161877|gb|ADI11589.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 223 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVAKGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|262173265|ref|ZP_06040942.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451] gi|261890623|gb|EEY36610.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451] Length = 224 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L G ++ EI+ L +S TV +L + KL+ NR AIAKAI G+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221 >gi|284034471|ref|YP_003384402.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283813764|gb|ADB35603.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 242 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G ++ EIA+++ +S TV A++ A KL+A +R Q +A A R G Sbjct: 171 LTPREREMVALVATGLSNLEIADRMYVSPFTVRAHVQRAMTKLEARDRAQLVAIAYRTG 229 >gi|108799996|ref|YP_640193.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119869121|ref|YP_939073.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|108770415|gb|ABG09137.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119695210|gb|ABL92283.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] Length = 218 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +A LTERET L+ G T+++IA +L LS TV ++ + KL NR++ AI Sbjct: 153 SAPTLTERETEVLRHVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAI 212 Query: 230 RFG 232 G Sbjct: 213 EHG 215 >gi|332298491|ref|YP_004440413.1| two component transcriptional regulator, LuxR family [Treponema brennaborense DSM 12168] gi|332181594|gb|AEE17282.1| two component transcriptional regulator, LuxR family [Treponema brennaborense DSM 12168] Length = 927 Score = 40.0 bits (92), Expect = 0.27, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 A RNL+ RE +L D Y++++IAE+LG++V TV ++ K NR + I Sbjct: 866 AKRNLSPREIEIGELLYDNYSNKQIAERLGIAVSTVATHIQHIYEKCSVRNRNEWI 921 >gi|304406021|ref|ZP_07387679.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345264|gb|EFM11100.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 201 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 36/60 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + L L DG +++EI+++L ++ T+ Y+ KL NR++AI + G+ Sbjct: 140 LTEREKAVLVLIADGKSTKEISKELFITTGTIRNYISVILNKLGVGNRVEAIKQFKEKGW 199 >gi|288919627|ref|ZP_06413956.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288349025|gb|EFC83273.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 218 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+R+ LT+RE L+L G T+ EIA +L +S+ T ++ S K+ A NR++ Sbjct: 147 KRRTQPIEPLTQREEEVLKLVAVGRTNAEIAAELFISLTTAKTHVASLLAKIGARNRVE 205 >gi|270158837|ref|ZP_06187494.1| transcriptional regulator [Legionella longbeachae D-4968] gi|289166371|ref|YP_003456509.1| regulatory protein, luxR family [Legionella longbeachae NSW150] gi|269990862|gb|EEZ97116.1| transcriptional regulator [Legionella longbeachae D-4968] gi|288859544|emb|CBJ13509.1| putative regulatory protein, luxR family [Legionella longbeachae NSW150] Length = 228 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT ++ CL G T ++I +KL LS TV +L +A KL NR + IA A++ Sbjct: 164 LTAKQIDCLYHLVKGLTIKQIGQKLNLSPRTVEDHLNAAKNKLHCHNRAELIAAALQIPL 223 Query: 234 I 234 I Sbjct: 224 I 224 >gi|262164556|ref|ZP_06032294.1| transcriptional regulator LuxR family [Vibrio mimicus VM223] gi|262026936|gb|EEY45603.1| transcriptional regulator LuxR family [Vibrio mimicus VM223] Length = 224 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L G ++ EI+ L +S TV +L + KL+ NR AIAKAI G+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221 >gi|308235090|ref|ZP_07665827.1| transcriptional regulator, LuxR family protein [Gardnerella vaginalis ATCC 14018] gi|311115225|ref|YP_003986446.1| hypothetical protein HMPREF0421_21341 [Gardnerella vaginalis ATCC 14019] gi|310946719|gb|ADP39423.1| conserved hypothetical protein [Gardnerella vaginalis ATCC 14019] Length = 217 Score = 40.0 bits (92), Expect = 0.27, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 37/60 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ +E+ ++L G +++EIA++L + V TVN +L KL +R+QA+A ++ + Sbjct: 156 LSPQESEIMRLCKQGSSTKEIADQLNVKVSTVNTHLRRIYGKLQVKSRMQALAALAKYSH 215 >gi|331085012|ref|ZP_08334099.1| hypothetical protein HMPREF0987_00402 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408712|gb|EGG88177.1| hypothetical protein HMPREF0987_00402 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 208 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE S ++L DG ++ EIAE L L TV YL S KL+ +R Q Sbjct: 148 QLTSREFSIIELVADGRSNREIAEALYLGEGTVRNYLSSILEKLELRDRTQ 198 >gi|319892883|ref|YP_004149758.1| Two-component response regulator-like protein [Staphylococcus pseudintermedius HKU10-03] gi|317162579|gb|ADV06122.1| Two-component response regulator-like protein [Staphylococcus pseudintermedius HKU10-03] Length = 208 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY + E LM + E +++ ++ ++ + L++RET L+ Sbjct: 101 DGYEMKDVDPEALMTSIETVLQGDKVIHKDAQQVMDTVITKPHMLNKLSKRETEVLKEMA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G T++EIAE L +S T+ ++ KL+ +R QA Sbjct: 161 KGKTNKEIAETLFVSEKTIKTHVSHIFSKLEVTDRTQA 198 >gi|290955347|ref|YP_003486529.1| two-component system regulator [Streptomyces scabiei 87.22] gi|260644873|emb|CBG67959.1| putative two-component system regulator [Streptomyces scabiei 87.22] Length = 236 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT RE L+L +G ++ E+AE LG++ T ++ K+ A +R QA+ A R Sbjct: 166 RGLTAREAQVLRLIAEGLSNAELAELLGIAESTAKTHVKRVLHKIGARDRAQAVVLAYRS 225 Query: 232 GYI 234 G + Sbjct: 226 GLM 228 >gi|229158972|ref|ZP_04287029.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 4342] gi|228624583|gb|EEK81353.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 4342] Length = 215 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|15839575|ref|NP_334612.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|13879689|gb|AAK44426.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis CDC1551] Length = 256 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A L ERE + L+L DG ++ ++A +L T+ + +L NR A+A Sbjct: 190 TPCAAALAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAH 249 Query: 228 AIRFGYI 234 A+R G I Sbjct: 250 ALRAGLI 256 >gi|330836949|ref|YP_004411590.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM 17374] gi|329748852|gb|AEC02208.1| transcriptional regulator, LuxR family [Spirochaeta coccoides DSM 17374] Length = 299 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 35/53 (66%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 A ++TERE S ++L +G T++EIA +L +S +TVN ++ + K + +RI Sbjct: 235 APYHITEREFSVIKLIANGRTNKEIAMELNISTNTVNNHVANIFSKTEVRSRI 287 >gi|323464084|gb|ADX76237.1| two-component response regulator [Staphylococcus pseudintermedius ED99] Length = 208 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 23/88 (26%), Positives = 43/88 (48%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 E LM + E +++ ++ ++ + L++RET L+ G T++EIAE Sbjct: 111 EALMTSIETVLQGDKVIHKDAQQVMDTVITKPHMLNKLSKRETEVLKEMAKGKTNKEIAE 170 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L +S T+ ++ KL+ +R QA Sbjct: 171 TLFVSEKTIKTHVSHIFSKLEVTDRTQA 198 >gi|311896469|dbj|BAJ28877.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 170 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ EI +L L V TV ++ + KL A +R QA+ A G Sbjct: 103 GLTGREGEVLRLMARGLSNAEIGAQLHLGVQTVKTHVSAVLGKLGARDRTQAVIAAYESG 162 Query: 233 YIC 235 ++ Sbjct: 163 FVT 165 >gi|294787329|ref|ZP_06752582.1| Two Component Transcriptional Regulator, LuxR family [Parascardovia denticolens F0305] gi|315227111|ref|ZP_07868898.1| LuxR family two component transcriptional regulator [Parascardovia denticolens DSM 10105] gi|294484685|gb|EFG32320.1| Two Component Transcriptional Regulator, LuxR family [Parascardovia denticolens F0305] gi|315119561|gb|EFT82694.1| LuxR family two component transcriptional regulator [Parascardovia denticolens DSM 10105] Length = 213 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 HK+ + +A + G +Q D + + + R L+ RE ++L Sbjct: 109 IHKDSPQTILTAVRRVAAGQPLSYEGIRFQTPRD--SFLRIKEAKTRELSPREVEVVELW 166 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 GY+ +EI E+L LS TV +L + KL A N Sbjct: 167 SQGYSLQEIGERLSLSPTTVRTHLQHSCDKLGAAN 201 >gi|170749447|ref|YP_001755707.1| two component LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170655969|gb|ACB25024.1| two component transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 222 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +A L+ RET L+L G++++EIA + LSV ++ Y A KL R + I A Sbjct: 152 SAEALSPRETDVLRLIAQGFSNKEIARRFDLSVKSIETYKARAAEKLGLRTRAEIIRYAA 211 Query: 230 RFGYI 234 G++ Sbjct: 212 AHGWL 216 >gi|17232908|ref|NP_489446.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134898|dbj|BAB77454.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 237 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L DG ++ IAEKL +SV TV ++ + KL +R Q +A+R G Sbjct: 176 LTRRELDVLKLIVDGCSNAVIAEKLYVSVGTVKTHVRNILNKLCVSDRTQIAVRALRAGL 235 Query: 234 IC 235 + Sbjct: 236 VA 237 >gi|253566600|ref|ZP_04844053.1| transcriptional regulator GerE [Bacteroides sp. 3_2_5] gi|251944772|gb|EES85247.1| transcriptional regulator GerE [Bacteroides sp. 3_2_5] Length = 278 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA- 224 ++ +R L++RE + LQL G TS EIA +L +S +TV+ + + KL N I+A Sbjct: 209 EKQDCSRLLSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEAC 268 Query: 225 -IAKAIRF 231 IAK ++ Sbjct: 269 RIAKELKL 276 >gi|297563788|ref|YP_003682761.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848237|gb|ADH70255.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 232 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE ++ G T+ E+A +L ++V TV +L S KL A NR++ A A R G Sbjct: 170 GLTVRELDIVRAVARGLTNTEVAGELFVTVSTVKTHLASVQAKLGARNRVEVAAWAYRNG 229 Query: 233 Y 233 + Sbjct: 230 H 230 >gi|119491420|ref|ZP_01623439.1| NarL subfamily protein [Lyngbya sp. PCC 8106] gi|119453415|gb|EAW34578.1| NarL subfamily protein [Lyngbya sp. PCC 8106] Length = 209 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 2/107 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 GY++ +E L N + G Y +L ++ S+ L+ERE L+ G Sbjct: 104 KGYLLKDTEPDELLNAIRTVHRGQKYIPPDVGAKLVQRLSNP--ELSERELEVLRSLAQG 161 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++ +IA L + TV +++ KLD +R QA+ A++ G +C Sbjct: 162 MSNADIATALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKRGIVC 208 >gi|111222013|ref|YP_712807.1| putative two-compnent system regulatory protein [Frankia alni ACN14a] gi|111149545|emb|CAJ61238.1| putative Two-compnent system regulatory protein ( two-component system response regulator) [Frankia alni ACN14a] Length = 240 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 36/55 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L++RE +++ + T+ +IA +LG++ TV ++ + +KL AV+R+ A+ KA Sbjct: 157 LSKREMEVIEIVAEAATNMQIARRLGITEDTVKRHVSNILMKLGAVSRLDAVKKA 211 >gi|325002788|ref|ZP_08123900.1| two component transcriptional regulator, LuxR family protein [Pseudonocardia sp. P1] Length = 225 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G G+T+ EIA +L +S T ++G KL A +R+Q + A G Sbjct: 161 LTGREREVLALVGRGHTNGEIAAQLVISPATARTHVGRLLTKLGARDRVQLVVIAHETGL 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|310643281|ref|YP_003948039.1| transcriptional regulatory protein degu (protease production enhancerprotein) [Paenibacillus polymyxa SC2] gi|309248231|gb|ADO57798.1| Transcriptional regulatory protein DegU (Protease production enhancerprotein) [Paenibacillus polymyxa SC2] Length = 216 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 13/113 (11%) Query: 129 NGYVIFTS--EFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------LTER 177 +GYV+ + E L+LA I G Y ++ T + F K+ + ++ L++R Sbjct: 100 SGYVLKNAPDEELLLAIRTI--HGGGTYIHPKMATSLVREFIKKDTTSQTEDPYEILSKR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E L L GY ++E+AEKL +SV TV A KL+ +R + + A++ Sbjct: 158 ELEILPLVAKGYGNKEVAEKLFISVKTVEANKAKIMEKLNLKSRPELVQYALK 210 >gi|308231489|ref|ZP_07412623.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu001] gi|308369330|ref|ZP_07417366.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu002] gi|308370340|ref|ZP_07421139.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu003] gi|308371615|ref|ZP_07425507.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu004] gi|308372832|ref|ZP_07430042.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu005] gi|308373913|ref|ZP_07434085.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu006] gi|308375096|ref|ZP_07442660.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu007] gi|308376332|ref|ZP_07438447.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu008] gi|308378574|ref|ZP_07483048.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu009] gi|308379720|ref|ZP_07487281.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu010] gi|308380921|ref|ZP_07491499.2| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu011] gi|308217119|gb|EFO76518.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu001] gi|308328057|gb|EFP16908.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu002] gi|308332337|gb|EFP21188.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu003] gi|308336088|gb|EFP24939.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu004] gi|308339719|gb|EFP28570.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu005] gi|308343725|gb|EFP32576.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu006] gi|308347445|gb|EFP36296.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu007] gi|308351495|gb|EFP40346.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu008] gi|308352073|gb|EFP40924.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu009] gi|308356023|gb|EFP44874.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu010] gi|308359978|gb|EFP48829.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu011] Length = 213 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A L ERE + L+L DG ++ ++A +L T+ + +L NR A+A Sbjct: 147 TPCAAALAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAH 206 Query: 228 AIRFGYI 234 A+R G I Sbjct: 207 ALRAGLI 213 >gi|293394394|ref|ZP_06638693.1| sensor histidine kinase [Serratia odorifera DSM 4582] gi|291423083|gb|EFE96313.1| sensor histidine kinase [Serratia odorifera DSM 4582] Length = 212 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +CY + K RS + R L++RE LQ G++++ IA++L LS T++ Y Sbjct: 126 ASCYGTGIAAIAPEKNRSESQRLATLSDRELVVLQYLARGWSNKAIADELLLSNKTISTY 185 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 KLDA N + IA A R + Sbjct: 186 KTRLLAKLDARNLVDLIALAERHALV 211 >gi|264678688|ref|YP_003278595.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|262209201|gb|ACY33299.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] Length = 223 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S L+ERE L+L GY+S EI+ +L +S TV+ ++ + KL A R A+ A Sbjct: 158 SKEEKLSEREIEILKLIACGYSSPEISTQLKISTMTVSTHVKNMYRKLQAKTRAHAVKAA 217 Query: 229 IRFGYI 234 G I Sbjct: 218 SLRGLI 223 >gi|258626786|ref|ZP_05721594.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580926|gb|EEW05867.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 224 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L G ++ EI+ L +S TV +L + KL+ NR AIAKAI G+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221 >gi|302552462|ref|ZP_07304804.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470080|gb|EFL33173.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 223 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +LT+RE L + G G+T+ EIA + L+ TV ++G K + +RIQA+ Sbjct: 159 SLTDREREILTVIGRGWTNTEIATRFHLAESTVKTHVGRILAKTGSRDRIQAV 211 >gi|221069868|ref|ZP_03545973.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220714891|gb|EED70259.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 230 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE L+L DG T+ EIAE L LS +TV ++ + KL +R +A+++A Sbjct: 169 LSTRELQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEA 223 >gi|34541106|ref|NP_905585.1| LuxR family DNA-binding response regulator [Porphyromonas gingivalis W83] gi|34397422|gb|AAQ66484.1| DNA-binding response regulator, LuxR family [Porphyromonas gingivalis W83] Length = 227 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE +Q DGY+++E AEK+ LS TV + + KL N + I A++ G Sbjct: 164 LTQREKEVVQYLCDGYSAKETAEKMHLSYRTVETHRSNILHKLGFTNAAELIRYAVKSGL 223 Query: 234 I 234 + Sbjct: 224 V 224 >gi|30265432|ref|NP_847809.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530989|ref|YP_022338.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49188248|ref|YP_031501.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481286|ref|YP_039401.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145220|ref|YP_086677.1| response regulator [Bacillus cereus E33L] gi|65317392|ref|ZP_00390351.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|118480442|ref|YP_897593.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165871317|ref|ZP_02215966.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635732|ref|ZP_02394042.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640431|ref|ZP_02398695.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688212|ref|ZP_02879423.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708051|ref|ZP_02898499.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651955|ref|ZP_02934538.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568889|ref|ZP_03021791.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036150|ref|ZP_03103550.1| DNA-binding response regulator [Bacillus cereus W] gi|196041030|ref|ZP_03108327.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196045422|ref|ZP_03112653.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218906592|ref|YP_002454426.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225867394|ref|YP_002752772.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227818179|ref|YP_002818188.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228918025|ref|ZP_04081555.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930420|ref|ZP_04093421.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936698|ref|ZP_04099489.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949137|ref|ZP_04111407.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124916|ref|ZP_04254092.1| Two component transcriptional regulator, LuxR [Bacillus cereus 95/8201] gi|229187641|ref|ZP_04314778.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC 6E1] gi|229603380|ref|YP_002869624.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687146|ref|ZP_05151004.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724071|ref|ZP_05185856.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254735533|ref|ZP_05193240.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254742202|ref|ZP_05199889.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755887|ref|ZP_05207919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761599|ref|ZP_05213619.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301056878|ref|YP_003795089.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30260110|gb|AAP29295.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47506137|gb|AAT34813.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49182175|gb|AAT57551.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49332842|gb|AAT63488.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978689|gb|AAU20239.1| response regulator [Bacillus cereus E33L] gi|118419667|gb|ABK88086.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164712984|gb|EDR18512.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511651|gb|EDR87033.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528841|gb|EDR91598.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170127024|gb|EDS95903.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667905|gb|EDT18657.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082659|gb|EDT67723.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190559956|gb|EDV13939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195991317|gb|EDX55285.1| DNA-binding response regulator [Bacillus cereus W] gi|196023629|gb|EDX62305.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028198|gb|EDX66808.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218537324|gb|ACK89722.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225787376|gb|ACO27593.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227004175|gb|ACP13918.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228595795|gb|EEK53478.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC 6E1] gi|228658546|gb|EEL14210.1| Two component transcriptional regulator, LuxR [Bacillus cereus 95/8201] gi|228810578|gb|EEM56929.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822907|gb|EEM68748.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829267|gb|EEM74903.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841613|gb|EEM86727.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267788|gb|ACQ49425.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300379047|gb|ADK07951.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 215 Score = 40.0 bits (92), Expect = 0.28, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|320532007|ref|ZP_08032900.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135771|gb|EFW27826.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 203 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L A G + EIA +L L TV YL SA K A NR +A A G+ Sbjct: 143 LTDREKEVLLAAATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGW 202 Query: 234 I 234 + Sbjct: 203 L 203 >gi|319793244|ref|YP_004154884.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315595707|gb|ADU36773.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 229 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 37/65 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A L+ RE+ L L G+T E+ ++G+S TV +++ + KLD N+ +A+ +A Sbjct: 164 APERLSPRESEVLGLVSRGFTYVEVGAQMGVSASTVQSHIRNIYGKLDVHNKSEAVFEAR 223 Query: 230 RFGYI 234 G++ Sbjct: 224 NLGWL 228 >gi|308070133|ref|YP_003871738.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681] gi|305859412|gb|ADM71200.1| Transcriptional regulatory protein degU [Paenibacillus polymyxa E681] Length = 216 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 13/113 (11%) Query: 129 NGYVIFTS--EFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------LTER 177 +GYV+ + E L+LA I G Y ++ T + F K+ + +++ L++R Sbjct: 100 SGYVLKNAPDEELLLAIRTI--HGGGTYIHPKMATSLVREFIKKDTTSQSEDPYEILSKR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E L L GY ++E+AEKL +SV TV A KL+ +R + + A++ Sbjct: 158 ELEILPLVAKGYGNKEVAEKLFISVKTVEANKAKIMEKLNLRSRPELVQYALK 210 >gi|294815787|ref|ZP_06774430.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294328386|gb|EFG10029.1| Transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 224 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L LA +G + IA L L+ TV YL +A K A NR+ AI + FG+ Sbjct: 164 LSARELRVLALAAEGESVSSIANALHLASGTVRNYLAAAIRKTGARNRLDAIRLSREFGW 223 Query: 234 I 234 + Sbjct: 224 L 224 >gi|289668036|ref|ZP_06489111.1| transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 923 Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +ERE L GY++++IA L LS +TV +L + KLDA +R A+A+A+ G Sbjct: 849 FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSRENALAQALERGL 908 Query: 234 I 234 + Sbjct: 909 L 909 >gi|94495569|ref|ZP_01302149.1| hypothetical protein SKA58_05955 [Sphingomonas sp. SKA58] gi|94424957|gb|EAT09978.1| hypothetical protein SKA58_05955 [Sphingomonas sp. SKA58] Length = 263 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 27/43 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LTE+E L+L G+ ++ IA LGLSVHT+N L A KL Sbjct: 15 LTEKEKQTLRLMVRGHDAKSIARSLGLSVHTINERLRDARRKL 57 >gi|126435625|ref|YP_001071316.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|126235425|gb|ABN98825.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 218 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +A LTERET L+ G T+++IA +L LS TV ++ + KL NR++ AI Sbjct: 153 SAPTLTERETEVLRHVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAI 212 Query: 230 RFG 232 G Sbjct: 213 EHG 215 >gi|72163434|ref|YP_291091.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71917166|gb|AAZ57068.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 223 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTE+E +L G+G T+ EI E++ L+ TV Y+ S KLD R Q Sbjct: 155 KLTEQERRIFELIGEGLTNREIGERVFLAEKTVKNYVSSILAKLDMQRRTQ 205 >gi|76667926|dbj|BAE45354.1| two component response regulater [Bacillus subtilis] Length = 229 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQ+ DG ++ I E L +S V ++ + K++ +R QA+ AI+ G+ Sbjct: 166 LTRRECEVLQMLADGKSNRGIGESLFISEKAVKNHVSNILQKINVNDRTQAVVVAIKNGW 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|15607336|ref|NP_214709.1| two component transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|31791373|ref|NP_853866.1| LuxR family two component transcriptional regulator [Mycobacterium bovis AF2122/97] gi|121636107|ref|YP_976330.1| LuxR family two component transcriptional regulator [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148659959|ref|YP_001281482.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|224988580|ref|YP_002643267.1| putative two component transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|260185058|ref|ZP_05762532.1| two component system transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis CPHL_A] gi|260203340|ref|ZP_05770831.1| two component system transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis K85] gi|289445726|ref|ZP_06435470.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis CPHL_A] gi|289568096|ref|ZP_06448323.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis T17] gi|289572775|ref|ZP_06453002.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis K85] gi|289748671|ref|ZP_06508049.1| two component system transcriptional regulator [Mycobacterium tuberculosis T92] gi|289756260|ref|ZP_06515638.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289760298|ref|ZP_06519676.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|289764311|ref|ZP_06523689.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|294994668|ref|ZP_06800359.1| two component system transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis 210] gi|297632675|ref|ZP_06950455.1| two component system transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis KZN 4207] gi|297729649|ref|ZP_06958767.1| two component system transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis KZN R506] gi|298527587|ref|ZP_07014996.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|313656975|ref|ZP_07813855.1| two component system transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis KZN V2475] gi|2909593|emb|CAA17317.1| POSSIBLE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) [Mycobacterium tuberculosis H37Rv] gi|31616958|emb|CAD93065.1| PUTATIVE TWO COMPONENT TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR-FAMILY) [Mycobacterium bovis AF2122/97] gi|121491754|emb|CAL70216.1| Putative two component transcriptional regulatory protein (probably luxR-family) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148504111|gb|ABQ71920.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|224771693|dbj|BAH24499.1| putative two component transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289418684|gb|EFD15885.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis CPHL_A] gi|289537206|gb|EFD41784.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis K85] gi|289541849|gb|EFD45498.1| two component system transcriptional regulator, luxR-family [Mycobacterium tuberculosis T17] gi|289689258|gb|EFD56687.1| two component system transcriptional regulator [Mycobacterium tuberculosis T92] gi|289696847|gb|EFD64276.1| transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289711817|gb|EFD75833.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|289715862|gb|EFD79874.1| transcriptional regulator [Mycobacterium tuberculosis T85] gi|298497381|gb|EFI32675.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] Length = 211 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A L ERE + L+L DG ++ ++A +L T+ + +L NR A+A Sbjct: 145 TPCAAALAEREVAVLRLLADGLSTHQVAVQLNYCERTIKNIVHDIVTRLKLRNRTHAVAH 204 Query: 228 AIRFGYI 234 A+R G I Sbjct: 205 ALRAGLI 211 >gi|47568528|ref|ZP_00239227.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|228988639|ref|ZP_04148725.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47554770|gb|EAL13122.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|228771090|gb|EEM19570.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 215 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|324329359|gb|ADY24619.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 215 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|312884751|ref|ZP_07744452.1| LuxR family transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309367664|gb|EFP95215.1| LuxR family transcriptional regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 211 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 51/98 (52%), Gaps = 2/98 (2%) Query: 130 GYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G++ +S+ L N + ++E + + + DF + + +LT ++ L + D Sbjct: 103 GFIPKSSDMRALVNALNQVLEGNMFFPETVADFGSEKNRLAEKIASLTPQQHKVLGMLSD 162 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 G +++IA +L +S T+ A++ + KLD NR QA+ Sbjct: 163 GLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAV 200 >gi|289642549|ref|ZP_06474692.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289507637|gb|EFD28593.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 407 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 35/57 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT RE+ L+L G T+ IAE L ++ TV +++ KL AVNR QAIA ++ Sbjct: 342 DLTARESEVLELMVAGATNSVIAETLVIAEETVKSHVKHILRKLGAVNRSQAIAGSL 398 >gi|87301837|ref|ZP_01084671.1| possible transcriptional regulator [Synechococcus sp. WH 5701] gi|87283405|gb|EAQ75360.1| possible transcriptional regulator [Synechococcus sp. WH 5701] Length = 89 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 4/79 (5%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++D L + RSS L+ERE ++ G T++EIA +L +S TV+ ++ + K Sbjct: 1 MSDRDNLIQLRSS----LSERELEIIERVATGLTNQEIALELMISKRTVDNHVSNIFTKT 56 Query: 217 DAVNRIQAIAKAIRFGYIC 235 A NR+ + A+ G IC Sbjct: 57 GAKNRVALLNWAMDNGKIC 75 >gi|325661231|ref|ZP_08149858.1| hypothetical protein HMPREF0490_00591 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472738|gb|EGC75949.1| hypothetical protein HMPREF0490_00591 [Lachnospiraceae bacterium 4_1_37FAA] Length = 208 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE S ++L DG ++ EIAE L L TV YL S KL+ +R Q Sbjct: 148 QLTSREFSIIELVADGRSNREIAEALYLGEGTVRNYLSSILEKLELRDRTQ 198 >gi|320160834|ref|YP_004174058.1| putative NarL family two-component system response regulator [Anaerolinea thermophila UNI-1] gi|319994687|dbj|BAJ63458.1| putative NarL family two-component system response regulator [Anaerolinea thermophila UNI-1] Length = 222 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 37/65 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ +SA NL+++E L L +G T+ EIA+ L L TV Y+ S KL NR +A Sbjct: 150 EEEASAFANLSQQEKHVLLLVSEGKTNREIAKALFLGEGTVRNYVSSILSKLGVSNRAEA 209 Query: 225 IAKAI 229 A A+ Sbjct: 210 AAYAV 214 >gi|307708433|ref|ZP_07644899.1| SalR [Streptococcus mitis NCTC 12261] gi|307615532|gb|EFN94739.1| SalR [Streptococcus mitis NCTC 12261] Length = 198 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G T +++ +K+ +S TV+ +L + KL NR +AI A + GY Sbjct: 135 LTPREIEILELVRNGLTIDDVCDKVYVSKRTVSNHLANIFSKLGVANRQEAIHIAEQLGY 194 >gi|295840223|ref|ZP_06827156.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|295827842|gb|EFG65645.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 206 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 51/115 (44%), Gaps = 5/115 (4%) Query: 122 VRLGFHKN--GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 +R FH GYV E LA V A G + T L K S L++RE Sbjct: 95 LRRAFHAGAGGYVDKYGETGDLAAVVRKVAAGGRHLDETLAFGLLKVSES---PLSDREL 151 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LA +G + IA L L+ TV YL +A K A NR+ AI A G++ Sbjct: 152 RVLGLAAEGESVAAIAGHLHLAAGTVRNYLAAAIRKTGARNRLDAIRLAKEAGWL 206 >gi|302529224|ref|ZP_07281566.1| two component system response regulator [Streptomyces sp. AA4] gi|302438119|gb|EFL09935.1| two component system response regulator [Streptomyces sp. AA4] Length = 213 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Query: 153 CYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++T F S+ R LT RE G G ++ EIA LGLS TV +LG Sbjct: 130 TRRLLTHFASAATPTSARTRLEPLTPREREVAVAVGQGSSNAEIARALGLSEATVKVHLG 189 Query: 211 SATVKLDAVNRIQ 223 K +A NR Q Sbjct: 190 RIMAKTEAANRTQ 202 >gi|239980581|ref|ZP_04703105.1| two-component system response regulator [Streptomyces albus J1074] gi|291452439|ref|ZP_06591829.1| two-component system response regulator [Streptomyces albus J1074] gi|291355388|gb|EFE82290.1| two-component system response regulator [Streptomyces albus J1074] Length = 228 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 4/91 (4%) Query: 149 AHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 A G ++IT+F L ++ + LTERET L G ++ EIA++L ++ T Sbjct: 131 APGVTRRLITEFSRLAERPQAPGPGQYGELTERETEVLVQIAQGLSNAEIADRLFVAEST 190 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 V ++ VKL +R QA A G + Sbjct: 191 VKTHVSRILVKLSLRDRTQAAVFAYEAGLVT 221 >gi|152999817|ref|YP_001365498.1| two component LuxR family transcriptional regulator [Shewanella baltica OS185] gi|151364435|gb|ABS07435.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS185] Length = 216 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L G++++EIA + L+ TV ++ + KLD +R QA+ K ++ Sbjct: 156 LSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLAL 215 Query: 234 I 234 I Sbjct: 216 I 216 >gi|42781357|ref|NP_978604.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737279|gb|AAS41212.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC 10987] Length = 211 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 39/70 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K++ + LT+RE L+ G +++EIA L ++ TV ++ + KL+ +R QA Sbjct: 142 KEKENPFSMLTKREQEVLREIAQGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQA 201 Query: 225 IAKAIRFGYI 234 A+++G I Sbjct: 202 ALYAVKYGVI 211 >gi|24372453|ref|NP_716495.1| LuxR family transcriptional regulator [Shewanella oneidensis MR-1] gi|24346436|gb|AAN53940.1|AE015531_6 transcriptional regulator, LuxR family [Shewanella oneidensis MR-1] Length = 255 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE + +Q G ++EIA +L +S HTV A++ S K + NR++ + A Sbjct: 190 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 244 >gi|114046728|ref|YP_737278.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-7] gi|113888170|gb|ABI42221.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 225 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 6/81 (7%) Query: 160 FLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 LE ++ S+ A++ L+ERE L G++++EIA + L+ TV ++ + Sbjct: 145 VLEQMQQSSATAQSVPTHDLLSEREREILGFMAGGFSNKEIANAVFLAEGTVKNHVSTIL 204 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KLD +R QA+ K ++ I Sbjct: 205 TKLDCRDRTQAVLKGLQLSLI 225 >gi|300790995|ref|YP_003771286.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800509|gb|ADJ50884.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 261 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ RE LQL +G + IA+ L LSV TV ++ S KL A +R A+ A R Sbjct: 176 AMPLSRREYQVLQLVAEGLENSAIAKLLFLSVETVRTHVKSILRKLSARDRTHAVTIAFR 235 Query: 231 FGYI 234 G + Sbjct: 236 SGIL 239 >gi|289662128|ref|ZP_06483709.1| transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 923 Score = 40.0 bits (92), Expect = 0.29, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +ERE L GY++++IA L LS +T+ +L + KLDA +R A+A+A++ G Sbjct: 849 FSERELEVLAQLARGYSNKQIARCLHLSENTIKFHLKNLYRKLDARSRENALAQALQRGL 908 Query: 234 I 234 + Sbjct: 909 L 909 >gi|260905221|ref|ZP_05913543.1| two component system response regulator [Brevibacterium linens BL2] Length = 260 Score = 40.0 bits (92), Expect = 0.29, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L L G T+ EIA L ++V TV ++ KLD +R QA+ A G Sbjct: 193 DLTDREREILVLVARGQTNTEIAATLFIAVQTVKTHVSRILYKLDIRDRAQAVIAAYESG 252 Query: 233 YIC 235 + Sbjct: 253 LVV 255 >gi|313202129|ref|YP_004040787.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|312441445|gb|ADQ85551.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 232 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 7/109 (6%) Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARN---LTERETSC 181 +GY++ E L + + +I +T+ L+ L + R+ A + LT+RE Sbjct: 122 DGYLLKDMEPEDLCASLKKVISGMTVIQDSLTEVLKQALLEPRTRKADDDVALTDREQEI 181 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LQ DG ++ IA KLG+S TV ++ KL +R++A A R Sbjct: 182 LQCLADGLNNKTIARKLGISDTTVKVHIKHLLSKLKLTSRLEAAVWAHR 230 >gi|259418825|ref|ZP_05742742.1| response regulator receiver protein [Silicibacter sp. TrichCH4B] gi|259345047|gb|EEW56901.1| response regulator receiver protein [Silicibacter sp. TrichCH4B] Length = 151 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Query: 165 KKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++R+S A N LT RE L +G ++ IA +LGLS HTV ++ KL NR Sbjct: 75 QQRASKAGNIRLTTREAQVLSCVAEGKQNKLIANRLGLSEHTVKLHIHHVIAKLGVNNRT 134 Query: 223 QA 224 +A Sbjct: 135 EA 136 >gi|256370998|ref|YP_003108822.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] gi|256007582|gb|ACU53149.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] Length = 216 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE+ L L G ++ +IA++L L TV +L S KL R +AIA A+R Sbjct: 154 GLTQRESEILDLVVKGLSNRDIAQRLFLGEETVKTHLSSIYRKLKVKGRAEAIAVALR 211 >gi|83716526|ref|YP_439048.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83650351|gb|ABC34415.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 223 Score = 40.0 bits (92), Expect = 0.30, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 32/66 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S LT RE L+L DG + EIA L +S TV+ + KL A N I Sbjct: 150 ASPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHW 209 Query: 228 AIRFGY 233 A R+GY Sbjct: 210 AYRYGY 215 >gi|330985566|gb|EGH83669.1| LuxR transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 247 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ELF + A L+ RET L+ G + EIAE +S TV ++ + + KL+ Sbjct: 177 ELFPQ--PAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTA 234 Query: 222 IQAIAKAIRFGYI 234 QA+ KAI G + Sbjct: 235 KQAVYKAINMGMV 247 >gi|313890015|ref|ZP_07823651.1| response regulator receiver domain protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121606|gb|EFR44709.1| response regulator receiver domain protein [Streptococcus pseudoporcinus SPIN 20026] Length = 213 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY++ TS + N + A G A + ++ + LT RE L L Sbjct: 102 GYMLKTSSAAEILNAIRKVAKGQLAIETEVDKKIKAHNQHPDLHEELTAREYDILYLLAK 161 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 162 GYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFR 204 >gi|269795973|ref|YP_003315428.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098158|gb|ACZ22594.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 247 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE G ++ EIAE++ LS+ TV +++ SA KLD NRIQ Sbjct: 188 LSNRERDVASAVAQGLSNTEIAEQMYLSMGTVKSHISSALTKLDFSNRIQ 237 >gi|253573801|ref|ZP_04851144.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847329|gb|EES75334.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 215 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ RE L L GY ++EIAE L +SV TV A+ KL+ +R + + AI+ Sbjct: 153 LSTREVEILPLVAKGYGNKEIAEMLHISVKTVEAHKAKIMEKLNLKSRPELVEYAIK 209 >gi|271961694|ref|YP_003335890.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504869|gb|ACZ83147.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 204 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE+ L+L +G + EIA +L LS TV +L + KL+A +R A+ A G+ Sbjct: 144 LTPRESDVLRLTAEGAEATEIAARLFLSAGTVRNHLTAIVSKLNARSRTDAVRIAGDAGW 203 Query: 234 I 234 I Sbjct: 204 I 204 >gi|229094522|ref|ZP_04225591.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-42] gi|228688906|gb|EEL42736.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-42] Length = 215 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|171915529|ref|ZP_02930999.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 234 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 33/72 (45%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 +I F E K LT RET L+ G +E+A +L LS TV YL K Sbjct: 151 LIQSFQEPPKTEKPPIPGLTPRETQILERLAQGMVPKEVAFELSLSYETVRDYLKGVYQK 210 Query: 216 LDAVNRIQAIAK 227 L +R +A+ K Sbjct: 211 LHVRSRTEAVIK 222 >gi|217974227|ref|YP_002358978.1| LuxR family two component transcriptional regulator [Shewanella baltica OS223] gi|217499362|gb|ACK47555.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS223] Length = 216 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L G++++EIA + L+ TV ++ + KLD +R QA+ K ++ Sbjct: 156 LSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLAL 215 Query: 234 I 234 I Sbjct: 216 I 216 >gi|120401269|ref|YP_951098.1| regulatory protein LuxR [Mycobacterium vanbaalenii PYR-1] gi|119954087|gb|ABM11092.1| regulatory protein, LuxR [Mycobacterium vanbaalenii PYR-1] Length = 884 Score = 39.7 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +T+RE L G+ T+ EIAE+LG+SV T++ +L KL +R Q +A+ R Sbjct: 824 ITDREREIAVLVGESLTNREIAERLGVSVRTIDGHLYRIFAKLSIEDREQ-LARLFR 879 >gi|319427568|gb|ADV55642.1| transcriptional regulator of curli operon, CsgD [Shewanella putrefaciens 200] Length = 221 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE + +Q G ++EIA +L +S HTV A++ S K + NR++ + A Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210 >gi|300117929|ref|ZP_07055696.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298724793|gb|EFI65468.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 215 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|182413369|ref|YP_001818435.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840583|gb|ACB74835.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 229 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%) Query: 157 ITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 I D L K R S + LT+RE QL G G ++ +IA++L LS TV+ + G Sbjct: 145 ILDSLSGRKPRGSQSPIEKLTDREFEVFQLIGQGKSTRDIAKQLHLSSKTVDVHRGHIKE 204 Query: 215 KLDAVNRIQAIAKAIRF 231 KL+ + + A+R+ Sbjct: 205 KLELKDTTSLVRHAVRW 221 >gi|167577459|ref|ZP_02370333.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] Length = 214 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 32/66 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S LT RE L+L DG + EIA L +S TV+ + KL A N I Sbjct: 141 ASPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHW 200 Query: 228 AIRFGY 233 A R+GY Sbjct: 201 AYRYGY 206 >gi|158317367|ref|YP_001509875.1| ATP-dependent transcription regulator LuxR [Frankia sp. EAN1pec] gi|158112772|gb|ABW14969.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Frankia sp. EAN1pec] Length = 1383 Score = 39.7 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 34/64 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R A L+ERE + L T+ EIA ++ +SV+TV +L S KLD R A Sbjct: 1314 EHRPEPAERLSERELAVLSYLPTMLTTAEIAAEMYVSVNTVKTHLKSIYRKLDVARRRDA 1373 Query: 225 IAKA 228 + +A Sbjct: 1374 VHRA 1377 >gi|160874438|ref|YP_001553754.1| two component LuxR family transcriptional regulator [Shewanella baltica OS195] gi|160859960|gb|ABX48494.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|315266674|gb|ADT93527.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 216 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L G++++EIA + L+ TV ++ + KLD +R QA+ K ++ Sbjct: 156 LSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLAL 215 Query: 234 I 234 I Sbjct: 216 I 216 >gi|90417180|ref|ZP_01225107.1| transcriptional regulator, LuxR family protein [marine gamma proteobacterium HTCC2207] gi|90330956|gb|EAS46217.1| transcriptional regulator, LuxR family protein [marine gamma proteobacterium HTCC2207] Length = 275 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 30/44 (68%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LT+RET +QL G++++ IAE+LG+S TV + ++ KLD Sbjct: 201 LTDRETQVVQLFLHGHSTKSIAERLGISPETVKLHRKNSYAKLD 244 >gi|319900177|ref|YP_004159905.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P 36-108] gi|319415208|gb|ADV42319.1| transcriptional regulator, LuxR family [Bacteroides helcogenes P 36-108] Length = 248 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +R L++R+ + L GY S++IA+KL +SVHTV+ + L+ N A+ A+R Sbjct: 185 SRLLSQRQLEIVSLLAKGYGSKQIADKLCISVHTVSRHRQDILSLLNVTNTAAAVEIALR 244 Query: 231 FGYI 234 I Sbjct: 245 MNLI 248 >gi|312140502|ref|YP_004007838.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311889841|emb|CBH49158.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 220 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ EIAE+L ++ TV ++G KL +R QA+ A G Sbjct: 156 TLTPREREVLELIAAGLSNVEIAERLFVAEQTVKTHVGKVLSKLSLRDRAQAVVMAYESG 215 Query: 233 YIC 235 + Sbjct: 216 LVT 218 >gi|300786429|ref|YP_003766720.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299795943|gb|ADJ46318.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 202 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L A G T EIA +L LS TV Y+ +A K A NR++A+ A G+ Sbjct: 142 LTARERDVLITARSGATIAEIASRLYLSEGTVRNYVSAAIAKTGARNRVEAVRMADERGW 201 Query: 234 I 234 + Sbjct: 202 L 202 >gi|257056771|ref|YP_003134603.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586643|gb|ACU97776.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 923 Score = 39.7 bits (91), Expect = 0.30, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 34/56 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +R L+ ++ QL DG T++EIA +L +S TV+ +L + KLD +R+Q A Sbjct: 865 SRGLSPQQERIAQLVADGATNKEIATQLFISHRTVDHHLRNIFAKLDVRSRVQLAA 920 >gi|229020635|ref|ZP_04177369.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1273] gi|229026848|ref|ZP_04183176.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1272] gi|228734456|gb|EEL85122.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1272] gi|228740659|gb|EEL90923.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1273] Length = 215 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIAAVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|153837454|ref|ZP_01990121.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|149749254|gb|EDM60039.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|328470183|gb|EGF41094.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 217 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G ++ +IA+ L +S HTV ++L S KL+ NR+QAI A R Sbjct: 158 LTRREMQVLSALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKR 214 >gi|82703694|ref|YP_413260.1| LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82411759|gb|ABB75868.1| transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 257 Score = 39.7 bits (91), Expect = 0.30, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 33/56 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +T+RET L+ G ++ EIA+ L +S TV ++ KLD NR A+AKA+ Sbjct: 196 ITDRETEILRHVQAGKSNHEIAQLLYISPLTVKNHIQKILKKLDVNNRAHAVAKAM 251 >gi|318060430|ref|ZP_07979153.1| transcriptional regulator [Streptomyces sp. SA3_actG] gi|318081237|ref|ZP_07988569.1| transcriptional regulator [Streptomyces sp. SA3_actF] Length = 197 Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust. Identities = 40/115 (34%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 122 VRLGFHKN--GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 +R FH GYV E LA V A G + T L + S L++RE Sbjct: 86 LRRAFHAGAGGYVDKYGETGDLAAVVRKVAAGGRHLDETLAFGLLRVAES---PLSDREL 142 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S L LA +G + IA L L+ TV YL +A K A NR+ AI A G++ Sbjct: 143 SVLGLAAEGESVAGIAGGLHLAAGTVRNYLAAAIRKTGARNRLDAIRLAKEAGWL 197 >gi|270261276|ref|ZP_06189549.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044760|gb|EFA17851.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 238 Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 28/43 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LT RE L+ +G TSEEIA +GLS TVN ++G++ KL Sbjct: 178 LTLREKDILRWCSEGKTSEEIAMLMGLSERTVNFHIGNSIKKL 220 >gi|167615608|ref|ZP_02384243.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|257142156|ref|ZP_05590418.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 214 Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 32/66 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S LT RE L+L DG + EIA L +S TV+ + KL A N I Sbjct: 141 ASPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHW 200 Query: 228 AIRFGY 233 A R+GY Sbjct: 201 AYRYGY 206 >gi|163800211|ref|ZP_02194112.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] gi|159175654|gb|EDP60448.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] Length = 222 Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 35/55 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE + L G ++++IA++L +S +TV +L + K+D NR+QA+ A Sbjct: 157 LTKREQQIITLLSSGASNQQIADQLLVSENTVKTHLHNIFKKIDVKNRVQALIWA 211 >gi|304409402|ref|ZP_07391022.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307303760|ref|ZP_07583513.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|304351920|gb|EFM16318.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306912658|gb|EFN43081.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] Length = 216 Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L G++++EIA + L+ TV ++ + KLD +R QA+ K ++ Sbjct: 156 LSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLAL 215 Query: 234 I 234 I Sbjct: 216 I 216 >gi|282864347|ref|ZP_06273403.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560834|gb|EFB66380.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 223 Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 33/67 (49%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LTERE L+L G ++ EIA L +S TV ++G KL +R+QA Sbjct: 152 PDALHTLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLRLRDRVQAAVY 211 Query: 228 AIRFGYI 234 A G + Sbjct: 212 AYESGLV 218 >gi|205372380|ref|ZP_03225194.1| response regulator receiver [Bacillus coahuilensis m4-4] Length = 210 Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 33/54 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE LQ +G ++++I++KL L+ TV Y+ KLD +RI A+ K Sbjct: 153 LSEREGQILQAIANGLSNKQISQKLFLTEGTVKNYVSKIYAKLDVQDRIGALNK 206 >gi|325962656|ref|YP_004240562.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323468743|gb|ADX72428.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 846 Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 32/54 (59%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ A +LT RE ++LA G T EIA++L +SV TV +L VKL +R Sbjct: 784 AAPAVHLTRREQDIVELAVQGLTDREIAQRLMVSVRTVEGHLYRTYVKLGVRSR 837 >gi|319900090|ref|YP_004159818.1| two component transcriptional regulator, LuxR family [Bacteroides helcogenes P 36-108] gi|319415121|gb|ADV42232.1| two component transcriptional regulator, LuxR family [Bacteroides helcogenes P 36-108] Length = 217 Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 30/60 (50%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQ G + EIA+ L +S +TV + K DA N I + KA+ G+I Sbjct: 155 TRREQEVLQAVAKGLNTREIADLLKVSENTVETFRRRLIFKFDAKNAIDMVLKAVSQGWI 214 >gi|311894021|dbj|BAJ26429.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 224 Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G+T+ EIA +L LS TV ++G K+ A +R+QA+ A G Sbjct: 158 LTGREREILLAVARGWTNGEIAARLVLSESTVKTHVGRVLAKIGARDRVQAVILAYDLG 216 >gi|325675879|ref|ZP_08155563.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|325553850|gb|EGD23528.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 222 Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ EIAE+L ++ TV ++G KL +R QA+ A G Sbjct: 158 TLTPREREVLELIAAGLSNVEIAERLFVAEQTVKTHVGKVLSKLSLRDRAQAVVMAYESG 217 Query: 233 YIC 235 + Sbjct: 218 LVT 220 >gi|320008415|gb|ADW03265.1| transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 1015 Score = 39.7 bits (91), Expect = 0.31, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE +L GYT+ IAE+L +S T + ++ + KL+ +R +A A A RF Sbjct: 952 LTSREQEVHRLVAAGYTNRRIAEELYISPKTASVHVSNILAKLNVSSRGEAAALAHRF 1009 >gi|126173479|ref|YP_001049628.1| two component LuxR family transcriptional regulator [Shewanella baltica OS155] gi|125996684|gb|ABN60759.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS155] Length = 216 Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L G++++EIA + L+ TV ++ + KLD +R QA+ K ++ Sbjct: 156 LSEREREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLAL 215 Query: 234 I 234 I Sbjct: 216 I 216 >gi|260775603|ref|ZP_05884500.1| DNA-binding HTH domain-containing protein [Vibrio coralliilyticus ATCC BAA-450] gi|260608784|gb|EEX34949.1| DNA-binding HTH domain-containing protein [Vibrio coralliilyticus ATCC BAA-450] Length = 215 Score = 39.7 bits (91), Expect = 0.31, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + + A +LT RE L+ G ++ +IAE L +S TV ++L KL NR+ Sbjct: 144 VLSQTAPATVDLTSREIQILRCLKTGASNMQIAEDLFISEFTVKSHLYQIFKKLSVKNRV 203 Query: 223 QAIAKA 228 QAIA A Sbjct: 204 QAIAWA 209 >gi|332523307|ref|ZP_08399559.1| response regulator receiver domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332314571|gb|EGJ27556.1| response regulator receiver domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 213 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY++ TS + N + A G A + ++ + LT RE L L Sbjct: 102 GYMLKTSSAAEILNAIRKVAKGQLAIETEVDKKIKAHNQHPDLHEELTAREYDILYLLAK 161 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R Sbjct: 162 GYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFR 204 >gi|304411116|ref|ZP_07392732.1| transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307301761|ref|ZP_07581519.1| transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|304350651|gb|EFM15053.1| transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306913799|gb|EFN44220.1| transcriptional regulator, LuxR family [Shewanella baltica BA175] Length = 221 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE + +Q G ++EIA +L +S HTV A++ S K + NR++ + A Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210 >gi|260461687|ref|ZP_05809933.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319785241|ref|YP_004144717.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032328|gb|EEW33593.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317171129|gb|ADV14667.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 241 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 32/54 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE CL+ A DG ++ +I++ L +S TV +L +A KL QA+A+ Sbjct: 179 LTPREFECLKWAADGKSAWDISQILSVSKRTVTFHLENAKAKLGVRTINQAVAR 232 >gi|302552997|ref|ZP_07305339.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] gi|302470615|gb|EFL33708.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] Length = 227 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERET L L G ++ EIA L ++ TV ++G VKL +R QA A G Sbjct: 161 DLTERETEVLALIAQGLSNAEIARHLFVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 220 Query: 233 YI 234 + Sbjct: 221 LV 222 >gi|256395654|ref|YP_003117218.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361880|gb|ACU75377.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 224 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ +LT RE G T++EIA++L LS TV ++ KL +R+QA+ Sbjct: 157 SAPLESLTRREREVFDQMVSGLTNKEIAQQLALSETTVKTHVVRILAKLAVRDRVQAVIY 216 Query: 228 AIRFGYI 234 A GYI Sbjct: 217 AYETGYI 223 >gi|254486014|ref|ZP_05099219.1| transcription regulator, LuxR family, putative [Roseobacter sp. GAI101] gi|214042883|gb|EEB83521.1| transcription regulator, LuxR family, putative [Roseobacter sp. GAI101] Length = 248 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 6/153 (3%) Query: 86 PIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV--IFTSEFLML 141 P W Q+ ++ + L E G+ P GIAF V +N V F L Sbjct: 90 PFYWSDAQDLDDLQPAEIAYLDKLKEAGIWP--GIAFQVFGPESRNAAVGMCFEPGAPRL 147 Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + ++E A F L S L+ RE L+ G ++ +A+ +G+S Sbjct: 148 SPDALLELQLASQCAHQRFCALTDGPKSPYARLSPRELEVLRWIAQGKSNSVMADIMGIS 207 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 HTV+ KL+ +R +A + I G + Sbjct: 208 RHTVDTITRRMFEKLEVTDRTRAAVRGISAGLL 240 >gi|254476478|ref|ZP_05089864.1| autoinducer-binding transcriptional regulator, LuxR family [Ruegeria sp. R11] gi|214030721|gb|EEB71556.1| autoinducer-binding transcriptional regulator, LuxR family [Ruegeria sp. R11] Length = 252 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT R+ LQ GDG T+++IA +GL+ TV +L A L A+ KA Sbjct: 184 RSLTRRQREALQWVGDGKTTQDIAVLMGLTTATVEKHLRLAREALSVETTAHAVLKA 240 >gi|254444518|ref|ZP_05057994.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198258826|gb|EDY83134.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 216 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 36/64 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S LT+RE +QL G G ++ EIAE L LSV T+ ++ KL+ N + + Sbjct: 147 ASPVDRLTDRELEVVQLIGRGLSTREIAESLHLSVKTIESHRAHVKEKLNLRNATELVQF 206 Query: 228 AIRF 231 ++++ Sbjct: 207 SVQW 210 >gi|94311470|ref|YP_584680.1| ATP-dependent transcription regulator LuxR [Cupriavidus metallidurans CH34] gi|93355322|gb|ABF09411.1| putative ATP-dependent transcriptional regulator, LuxR-family [Cupriavidus metallidurans CH34] Length = 925 Score = 39.7 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +RS+ R L+ERE L+L +++ +A L +S TV +L + +KL R +A+ Sbjct: 847 RRSTPIRTLSEREAEVLKLIAQAMSNKMVARTLSISPETVKWHLKNIYIKLGVSGRDEAV 906 Query: 226 A 226 A Sbjct: 907 A 907 >gi|319941648|ref|ZP_08015972.1| hypothetical protein HMPREF9464_01191 [Sutterella wadsworthensis 3_1_45B] gi|319804878|gb|EFW01732.1| hypothetical protein HMPREF9464_01191 [Sutterella wadsworthensis 3_1_45B] Length = 207 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 30/47 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LT+RE +++ GY+++E+A + G+S TV + GSA KL+ N Sbjct: 146 LTQREREVIRMVAQGYSNKEVAAEFGISEKTVQVHRGSAYRKLELHN 192 >gi|256420485|ref|YP_003121138.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256035393|gb|ACU58937.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 208 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L L +G T+ EIAEKL +S TVN++ KL+ N I A+ Sbjct: 147 LTRREKEVLSLISEGNTNAEIAEKLFISADTVNSHRKKLLAKLEVKNTAMLIKYAV 202 >gi|297562533|ref|YP_003681507.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846981|gb|ADH69001.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 222 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 29/53 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE + L G G ++EEIA L LS T ++ A VKL +R Q + Sbjct: 155 GLTEREREVVALVGGGLSNEEIAAHLVLSPATAKTHVSRAMVKLGVRDRAQLV 207 >gi|326392384|ref|ZP_08213800.1| regulatory protein LuxR [Thermoanaerobacter ethanolicus JW 200] gi|325991576|gb|EGD50152.1| regulatory protein LuxR [Thermoanaerobacter ethanolicus JW 200] Length = 66 Score = 39.7 bits (91), Expect = 0.32, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L + +T L L GY +IA+ LG+ V TV + KL+ N +A+ KAI+ G Sbjct: 3 LNDSQTKILALEAKGYRESDIAKVLGIGVVTVKYHKRKIVEKLEVKNLKEAVVKAIKLGL 62 Query: 234 I 234 I Sbjct: 63 I 63 >gi|323703023|ref|ZP_08114679.1| two component transcriptional regulator, LuxR family [Desulfotomaculum nigrificans DSM 574] gi|323532036|gb|EGB21919.1| two component transcriptional regulator, LuxR family [Desulfotomaculum nigrificans DSM 574] Length = 213 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 2/84 (2%) Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E ++++ A ++ E+ K SS + LTE++ S +L G + EIAE+L LS + Sbjct: 125 ETVLDSQVAA-SIVNKLKEVPNKNSSLSL-LTEQQISIAKLVAQGLKNREIAEQLYLSEN 182 Query: 204 TVNAYLGSATVKLDAVNRIQAIAK 227 T+ ++ + KL+ NRI +AK Sbjct: 183 TIKFHIQNIMRKLNVNNRIALVAK 206 >gi|303256175|ref|ZP_07342191.1| two component transcriptional regulator, LuxR family [Burkholderiales bacterium 1_1_47] gi|331001230|ref|ZP_08324856.1| transcriptional regulator, LuxR family [Parasutterella excrementihominis YIT 11859] gi|302860904|gb|EFL83979.1| two component transcriptional regulator, LuxR family [Burkholderiales bacterium 1_1_47] gi|329568957|gb|EGG50753.1| transcriptional regulator, LuxR family [Parasutterella excrementihominis YIT 11859] Length = 228 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 15/104 (14%) Query: 146 IIEAHGA-----CYQVITDFLE----------LFKKRSSAARNLTERETSCLQLAGDGYT 190 I+ AHG+ +V+ D L + R + A L+ RET L L G + Sbjct: 122 ILRAHGSPMSPTAARVLVDALRRKPTVKPVVSVAASRPAVANPLSPRETEVLNLLARGMS 181 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI+ L +S HTV A++ KL +R +A+ +A + G + Sbjct: 182 FAEISSVLNISCHTVTAHIKKIYRKLQVHSRGEAVYEAAQLGIL 225 >gi|296877409|ref|ZP_06901446.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] gi|296431570|gb|EFH17380.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] Length = 199 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ +E + L+ G +++EIA++L LS T+ Y+ + KLDA NR +A A G+ Sbjct: 139 LSPQEKAVLKEVAKGASNQEIADRLFLSNGTIRNYMSAILTKLDAENRTEAAKIAQEKGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|294632670|ref|ZP_06711229.1| LuxR family two component transcriptional regulator [Streptomyces sp. e14] gi|292830451|gb|EFF88801.1| LuxR family two component transcriptional regulator [Streptomyces sp. e14] Length = 201 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT R+ L+L DG+ +E IA L S HTV + +L NR A+A A+R G Sbjct: 141 LTGRQLDVLRLMADGHGNEAIAATLHCSRHTVKNVIYELMGQLQVRNRAHAVAHALRTGL 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|229821508|ref|YP_002883034.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567421|gb|ACQ81272.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 225 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++EIA +L + TV ++ + KL +R+QA+A A R G Sbjct: 162 LTERELVVLRLLARGLNNDEIAAELVVGRATVKTHVSNVLAKLQLRDRVQAVAYAYRHG 220 >gi|226314223|ref|YP_002774119.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226097173|dbj|BAH45615.1| probable transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 858 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 5/77 (6%) Query: 157 ITDFLELF-----KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + L LF K+++ LT +E L + +G +++ IA++LG ++ TV YL Sbjct: 770 VNQLLSLFPKKMEKRKAPLIEPLTGKEMIILSMLAEGASNKMIADELGNTLGTVKVYLHR 829 Query: 212 ATVKLDAVNRIQAIAKA 228 KL NR QA+ KA Sbjct: 830 IYGKLGVTNRTQALLKA 846 >gi|148239259|ref|YP_001224646.1| two component system response regulator [Synechococcus sp. WH 7803] gi|147847798|emb|CAK23349.1| Two component system response regulator [Synechococcus sp. WH 7803] Length = 235 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE G + IA LGLSV TV +++G+A KL A +R Q A+ +G Sbjct: 170 ELTPRELEVAAGVARGLKNNAIATLLGLSVETVKSHVGNAMDKLGARDRTQMAVTALLYG 229 Query: 233 YI 234 I Sbjct: 230 LI 231 >gi|121053812|gb|ABM47010.1| response regulator [Amycolatopsis orientalis] Length = 222 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT+RE L L G++++EIA +L +S TV +++ K + +R QA+ A + G Sbjct: 159 NLTKREAHVLTLIAAGHSNKEIAAELFVSETTVKSHINRIFAKTGSRDRAQAVRYAYQAG 218 Query: 233 YI 234 Y+ Sbjct: 219 YV 220 >gi|145225590|ref|YP_001136268.1| two component LuxR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315445943|ref|YP_004078822.1| LuxR family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145218076|gb|ABP47480.1| two component transcriptional regulator, LuxR family [Mycobacterium gilvum PYR-GCK] gi|315264246|gb|ADU00988.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. Spyr1] Length = 209 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + LT+RE+ L L +G ++ IA KL + TV +L S KL +R A+A A+ Sbjct: 144 ARQGLTQRESEILALVVNGLSNRAIAAKLIIGDETVKTHLSSIYRKLGVSDRTAAVATAL 203 Query: 230 RFG 232 R G Sbjct: 204 REG 206 >gi|84687579|ref|ZP_01015454.1| transcriptional regulator, LuxR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84664369|gb|EAQ10858.1| transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2654] Length = 183 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 3/84 (3%) Query: 151 GACYQ-VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA ++ I F +L + R + LTERE +G T++EIA LG+S TV + Sbjct: 102 GAPFEKAIWTFADLSEVRPTI--TLTERERQVAARLAEGLTAKEIARVLGISHRTVETHR 159 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 VK+ A N ++ +A+ F + Sbjct: 160 AKLLVKMKAKNSLELVARLAGFPF 183 >gi|322392560|ref|ZP_08066020.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321144552|gb|EFX39953.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 199 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L G +++EIA++L LS TV Y+ + KL A NR Sbjct: 127 ELMEVMMTHPNPLTEQEVAVLHGVAQGLSNQEIADQLYLSNGTVRNYMTNILSKLGASNR 186 Query: 222 IQAIAKAIRFGYI 234 +A A G++ Sbjct: 187 TEAAKTAEEEGWL 199 >gi|303237319|ref|ZP_07323889.1| transcriptional regulator, LuxR family [Prevotella disiens FB035-09AN] gi|302482706|gb|EFL45731.1| transcriptional regulator, LuxR family [Prevotella disiens FB035-09AN] Length = 251 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 32/56 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L E LQL+ G+T EIAE++ SV T+ Y SA KL N +AIAK++ Sbjct: 191 LKAEEIEVLQLSVTGFTMGEIAERMCKSVDTIKFYKRSAFKKLGVENITEAIAKSM 246 >gi|269925915|ref|YP_003322538.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789575|gb|ACZ41716.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 226 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G +++EIA ++ +S TV ++ S KL +R QA+ A++ G+ Sbjct: 160 LTSREVEILDCIARGMSNKEIARQMSISDQTVKNHITSILRKLAVNDRTQAVIYALKRGW 219 Query: 234 I 234 I Sbjct: 220 I 220 >gi|145300854|ref|YP_001143695.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853626|gb|ABO91947.1| transcriptional regulator, LuxR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 200 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 9/96 (9%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAA-RN---LTERETSCLQLAGDGYTSEEIA 195 +L E I H C D + ++K RN LT RE ++ G ++ EIA Sbjct: 109 VLQGEYWIPRHLLC-----DLVNYYRKGGEHHLRNQTLLTAREQEIIRYLMTGASNTEIA 163 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L +S HT+ ++L + KL+ NR+QA++ A + Sbjct: 164 DSLFVSEHTIKSHLYNVFKKLNVRNRLQAVSWAKEY 199 >gi|84503539|ref|ZP_01001590.1| DNA-binding response regulator, LuxR family protein [Oceanicola batsensis HTCC2597] gi|84388029|gb|EAQ01077.1| DNA-binding response regulator, LuxR family protein [Oceanicola batsensis HTCC2597] Length = 196 Score = 39.7 bits (91), Expect = 0.32, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE ++ GY+++EIA +LG+ TV ++ + + KL+A NR A +A G Sbjct: 135 SLTPREVEVVRGIAAGYSNKEIARELGVQEVTVKLHVKTLSRKLEARNRTHAAMRARDLG 194 Query: 233 YI 234 + Sbjct: 195 LV 196 >gi|260426159|ref|ZP_05780138.1| autoinducer-binding transcriptional regulator, LuxR family [Citreicella sp. SE45] gi|260420651|gb|EEX13902.1| autoinducer-binding transcriptional regulator, LuxR family [Citreicella sp. SE45] Length = 255 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 ++LT+R+ L+ GDG T ++IA +GL+ T+ +L A L+ QA+AKA Sbjct: 188 QSLTKRQREALEWVGDGKTMQDIAAIMGLTQATIEKHLRLAREALNVETTAQAVAKA 244 >gi|114799870|ref|YP_759311.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114740044|gb|ABI78169.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC 15444] Length = 876 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 169 SAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 SAAR LT RE L+L G ++ EI+E+LG S TV ++ + KL+A NR+ Sbjct: 803 SAAREHPLGLTRREQDVLRLIVKGCSNREISEELGRSPRTVEHHVSAVLSKLNAQNRMAV 862 Query: 225 IAK 227 + + Sbjct: 863 MLR 865 >gi|159899994|ref|YP_001546241.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus ATCC 23779] gi|159893033|gb|ABX06113.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 877 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 37/55 (67%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ERE L+L G+++ EIAE+L +++ TV ++ + KL+A +R +A+A A Sbjct: 816 LSEREIEVLKLLALGHSNAEIAERLVIAIGTVKRHVNNLLGKLNARSRTEAVAIA 870 >gi|13473840|ref|NP_105408.1| two-component system response regulator [Mesorhizobium loti MAFF303099] gi|14024591|dbj|BAB51194.1| two-component system response regulator [Mesorhizobium loti MAFF303099] Length = 220 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R LTER+T L+L +G +++E+A +L L TV ++ KL+ NR +A Sbjct: 153 RQLTERQTEILRLVAEGLSNKEVALRLELQEKTVKHHMTGVLSKLNVRNRTEA 205 >gi|110633760|ref|YP_673968.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284744|gb|ABG62803.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 241 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 30/58 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L RE CL G S++IA L LS +TV +YL +A KL QA+A A R Sbjct: 178 TLAPRERECLLWTARGKDSKDIAGILDLSEYTVRSYLRTARQKLQCRTLSQAVATATR 235 >gi|213965869|ref|ZP_03394060.1| two-component system response regulator [Corynebacterium amycolatum SK46] gi|213951447|gb|EEB62838.1| two-component system response regulator [Corynebacterium amycolatum SK46] Length = 227 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ +IAE+L L+ TV ++L KLD +R A+A+A G Sbjct: 165 LTPRELEVLELVARGMSNRKIAEQLVLTEATVKSHLVHIFTKLDVSSRTAAVARAQELGM 224 Query: 234 I 234 + Sbjct: 225 L 225 >gi|118917992|dbj|BAF40420.1| PsyR [Pseudomonas syringae pv. tabaci] Length = 247 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ELF + + L+ RET L+ G + EIAE +S TV ++ + + KL+ Sbjct: 177 ELFPQPTQC--KLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTA 234 Query: 222 IQAIAKAIRFGYI 234 QA+ KAI G + Sbjct: 235 KQAVYKAINMGMV 247 >gi|126175697|ref|YP_001051846.1| response regulator receiver protein [Shewanella baltica OS155] gi|125998902|gb|ABN62977.1| transcriptional regulator, LuxR family [Shewanella baltica OS155] Length = 249 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE + +Q G ++EIA +L +S HTV A++ S K + NR++ + A Sbjct: 184 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVELLRWA 238 >gi|110636531|ref|YP_676738.1| two component LuxR family transcriptional regulator [Cytophaga hutchinsonii ATCC 33406] gi|110279212|gb|ABG57398.1| two component transcriptional regulator, LuxR family [Cytophaga hutchinsonii ATCC 33406] Length = 215 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 36/69 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S A LT+RE L+ G +++ IA+KL +SV TV + + KLD N + I Sbjct: 147 KASQIAETLTKRELEVLKEVSMGLSTKLIADKLFISVRTVETHRINLMKKLDVHNSAELI 206 Query: 226 AKAIRFGYI 234 KA+ I Sbjct: 207 KKAMDLNII 215 >gi|307705686|ref|ZP_07642533.1| DNA-binding response regulator [Streptococcus mitis SK597] gi|307620766|gb|EFN99855.1| DNA-binding response regulator [Streptococcus mitis SK597] Length = 199 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G +++EIA++L LS TV Y+ + KLDA NR A A G+ Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLDASNRTDAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|229091257|ref|ZP_04222475.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228692023|gb|EEL45764.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 209 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K+ + LT+RE LQ G +++EIA +L ++ TV ++ + KL+ +R QA Sbjct: 141 KKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAA 200 Query: 226 AKAIRFG 232 A++ G Sbjct: 201 LYAVKHG 207 >gi|284990174|ref|YP_003408728.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063419|gb|ADB74357.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 201 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ RE L+ A DG T +IA +L LS TV YL SA K A R++A A Sbjct: 138 ATPLSTREADVLREAADGATVADIARRLFLSEGTVRNYLSSAIGKTGARTRVEAARVAAD 197 Query: 231 FGYI 234 G++ Sbjct: 198 KGWL 201 >gi|254437674|ref|ZP_05051168.1| Sigma-70, region 4 family [Octadecabacter antarcticus 307] gi|198253120|gb|EDY77434.1| Sigma-70, region 4 family [Octadecabacter antarcticus 307] Length = 171 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 3/103 (2%) Query: 129 NGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQLA 185 G T++ M +EV I G VI + + L + + R++T+R+ LQ Sbjct: 55 KGATALTAKIGMTQDEVEEIWAECGDEITVINNVMHLKIQTLPYSQRHMTKRQREVLQWV 114 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 GDG T+++IA L L+ T+ +L A LD QA+ KA Sbjct: 115 GDGKTTQDIAILLELTPATIEKHLRLARETLDVETTAQAVLKA 157 >gi|182413030|ref|YP_001818096.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840244|gb|ACB74496.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 239 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L ++RS+ LTERE L + GDG + + +E+LG+S TV + + KL Sbjct: 137 LQERRSTTLDALTEREQIVLSVIGDGSDNAQASERLGISAKTVGTHREAIMRKLGLHQIG 196 Query: 223 QAIAKAIRFGYI 234 Q + A++ GY+ Sbjct: 197 QLMLYALQNGYV 208 >gi|167464268|ref|ZP_02329357.1| two component transcriptional regulator, LuxR family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383996|ref|ZP_08057726.1| two-component response regulator YfiJ-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151473|gb|EFX44660.1| two-component response regulator YfiJ-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 225 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 5/67 (7%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR--- 230 LT RET + GY +++IA +L +S +TV ++ + KL+ NR+Q A A++ Sbjct: 158 LTARETEIVAHVSKGYNNKQIALRLSISENTVKNHMKNILDKLNLENRVQLTAYAVKHQL 217 Query: 231 --FGYIC 235 +G+I Sbjct: 218 THYGHIS 224 >gi|126650153|ref|ZP_01722386.1| two-component response regulator [Bacillus sp. B14905] gi|126593325|gb|EAZ87287.1| two-component response regulator [Bacillus sp. B14905] Length = 210 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 36/60 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L L G ++EIA++L +++ TV ++ + KL+ +R QA+ A + G Sbjct: 148 HLTDREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNG 207 >gi|120402226|ref|YP_952055.1| regulatory protein LuxR [Mycobacterium vanbaalenii PYR-1] gi|119955044|gb|ABM12049.1| regulatory protein, LuxR [Mycobacterium vanbaalenii PYR-1] Length = 930 Score = 39.7 bits (91), Expect = 0.33, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT +ET +LA +G+T++EI +L +S HT +L VKL +R Q Sbjct: 873 LTAQETQIARLAAEGFTNQEIGAQLFISAHTAEWHLRKVFVKLGITSRRQ 922 >gi|83945712|ref|ZP_00958057.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633] gi|83850913|gb|EAP88773.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633] Length = 210 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 30/60 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G G + E A LGLS HT+ ++ S KL R +A A R G Sbjct: 149 DLTPRERDVLSLIGRGLRNAEAASALGLSEHTIAGHIKSVYSKLGISTRAEAALLASRLG 208 >gi|303238517|ref|ZP_07325051.1| transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302593915|gb|EFL63629.1| transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 274 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 37/59 (62%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + LTE++ + + + G++ E+IA++L LS+ T+ + KL+A +R+ A+ KA+ Sbjct: 201 SHKLTEKQIAIISMIAQGFSDEQIAQELSLSLATIKYHNQLIFKKLNANSRVDAVVKAL 259 >gi|291575300|gb|ADE10225.1| LigR1 [Actinoplanes liguriensis] Length = 217 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + L++RE + L L G G T+ EIA +L +S TV Y+ KL NR+QA Sbjct: 150 KQLSDREQAVLGLIGQGLTNAEIAGRLFISDSTVKEYVSVILRKLGVANRVQA 202 >gi|299134770|ref|ZP_07027962.1| two component transcriptional regulator, LuxR family [Afipia sp. 1NLS2] gi|298590580|gb|EFI50783.1| two component transcriptional regulator, LuxR family [Afipia sp. 1NLS2] Length = 210 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 31/61 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT RE L DG +IA KL LSV TV+ + + +K DA + + A+R Sbjct: 144 RRLTPREREIFDLLVDGRKISDIARKLDLSVKTVSTHKTNILLKFDAATVVDLVHYAMRH 203 Query: 232 G 232 G Sbjct: 204 G 204 >gi|297195101|ref|ZP_06912499.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152625|gb|EFH31883.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 218 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G T+ EIA ++G+ T ++ + K+ A +R QA+ A G Sbjct: 154 RLTGREAEVLRLMATGLTNAEIAGRMGVGPATTKTHVAAVLGKIGARDRTQAVIAAYESG 213 Query: 233 YIC 235 +I Sbjct: 214 FIS 216 >gi|302559531|ref|ZP_07311873.1| two-component system response regulator TcsR2 [Streptomyces griseoflavus Tu4000] gi|302477149|gb|EFL40242.1| two-component system response regulator TcsR2 [Streptomyces griseoflavus Tu4000] Length = 202 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 32/62 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L +G + +IA LSV TV YL + KL A NR+ A+ A G+ Sbjct: 141 LTEREVEVLARVAEGADTTQIAATTSLSVGTVRNYLTTIVNKLGARNRVDALRIARDNGW 200 Query: 234 IC 235 + Sbjct: 201 LA 202 >gi|256391489|ref|YP_003113053.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256357715|gb|ACU71212.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 253 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ RE L L G T +IA +LG+S TV+ +L A VKL R+QA + Sbjct: 196 KVSPREADVLDLLCRGLTDRQIATRLGISPRTVDKHLEHAYVKLGVRCRVQAATR 250 >gi|256380943|ref|YP_003104603.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255925246|gb|ACU40757.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 234 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 37/68 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S R L+ RE LQL DG ++ +A+ L +SV TV ++ + KL A +R A++ Sbjct: 162 SGTRRALSRREYEVLQLIADGLENQSVADALYVSVETVRTHVKNILRKLRARDRTHAVSL 221 Query: 228 AIRFGYIC 235 A + G + Sbjct: 222 AYQAGLLS 229 >gi|145295913|ref|YP_001138734.1| hypothetical protein cgR_1838 [Corynebacterium glutamicum R] gi|140845833|dbj|BAF54832.1| hypothetical protein [Corynebacterium glutamicum R] Length = 210 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + L G ++ EI +KL L+ TV +++G KLD +R A+A+A + G Sbjct: 150 LSAREIEVVSLVAQGQSNREIGKKLFLTEATVKSHMGHVFNKLDVTSRTAAVAEARQRGI 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|118589407|ref|ZP_01546813.1| putative two-component response regulator protein [Stappia aggregata IAM 12614] gi|118438107|gb|EAV44742.1| putative two-component response regulator protein [Stappia aggregata IAM 12614] Length = 304 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 31/60 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G ++++I E LGLS TVN +L VKL NR A +A Y Sbjct: 243 LTQREAEVLIWIAKGKSNKDIGEILGLSPRTVNKHLEQIFVKLGVENRASAAVRAAEVIY 302 >gi|146320266|ref|YP_001199977.1| response regulator [Streptococcus suis 98HAH33] gi|223933224|ref|ZP_03625215.1| two component transcriptional regulator, LuxR family [Streptococcus suis 89/1591] gi|253751279|ref|YP_003024420.1| response regulator protein [Streptococcus suis SC84] gi|253753180|ref|YP_003026320.1| response regulator protein [Streptococcus suis P1/7] gi|253755003|ref|YP_003028143.1| response regulator protein [Streptococcus suis BM407] gi|330832254|ref|YP_004401079.1| response regulator [Streptococcus suis ST3] gi|145691072|gb|ABP91577.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Streptococcus suis 98HAH33] gi|223898154|gb|EEF64524.1| two component transcriptional regulator, LuxR family [Streptococcus suis 89/1591] gi|251815568|emb|CAZ51151.1| response regulator protein [Streptococcus suis SC84] gi|251817467|emb|CAZ55208.1| response regulator protein [Streptococcus suis BM407] gi|251819425|emb|CAR44899.1| response regulator protein [Streptococcus suis P1/7] gi|292557848|gb|ADE30849.1| regulatory protein, LuxR: Response regulator receiver [Streptococcus suis GZ1] gi|319757560|gb|ADV69502.1| response regulator [Streptococcus suis JS14] gi|329306477|gb|AEB80893.1| response regulator [Streptococcus suis ST3] Length = 213 Score = 39.7 bits (91), Expect = 0.33, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 11/122 (9%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDF---LELFKKRSSAARN 173 +PV L GY++ TS A+E++ Y + T+ +E K+ + Sbjct: 93 YPV-LEAGARGYMLKTSS----ADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDD 147 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L GY ++ IA++ +S+ TV ++ + KL +R QA+ A + G Sbjct: 148 LTAREREILTLLAKGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGL 207 Query: 234 IC 235 + Sbjct: 208 VA 209 >gi|320536217|ref|ZP_08036263.1| response regulator receiver domain protein [Treponema phagedenis F0421] gi|320146919|gb|EFW38489.1| response regulator receiver domain protein [Treponema phagedenis F0421] Length = 201 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +L ERE L+L DG ++EIA++L LS T+ Y+ S KL +R Q + Sbjct: 143 DLNEREADILELIADGLNNKEIAQRLYLSEGTIRNYVSSILEKLALRDRTQLVV 196 >gi|311895674|dbj|BAJ28082.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 341 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 3/87 (3%) Query: 151 GACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 G + + D F +R+ A + + T+ L+L G++ + IA KL +S+ T Sbjct: 252 GTLHDRMWDTAAAFIRRADEAAPRLDAGDLRTAILELLSAGHSDDAIARKLAISLRTCRR 311 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ LDA R QA +A+R G + Sbjct: 312 HVSELLTTLDARTRFQAGVEAVRLGLV 338 >gi|302340566|ref|YP_003805772.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301637751|gb|ADK83178.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 214 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++LT+RE +L GY + EIA++L ++ TV Y+ S KL NR + I A R Sbjct: 153 KDLTKREKEIFKLISRGYDNTEIADELCIAYQTVRNYVSSIISKLGIKNRYEIIKLANRM 212 >gi|289649319|ref|ZP_06480662.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 247 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ELF + A L+ RET L+ G + EIAE +S TV ++ + + KL+ Sbjct: 177 ELFPQ--PAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTA 234 Query: 222 IQAIAKAIRFGYI 234 QA+ KAI G + Sbjct: 235 KQAVYKAINMGMV 247 >gi|312200594|ref|YP_004020655.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231930|gb|ADP84785.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 214 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA-----RNLTERETS 180 +G+V+ SE L + + A G V +E F +R LT+RE Sbjct: 101 SGFVLKDSEPADLLRAIRVVAAGESLLSPAVTRRVIEAFARRPVGPGAPDLDGLTDRERE 160 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + L G G +++EIA +L +S T ++ VKL A +R Q Sbjct: 161 VMGLVGHGLSNDEIAARLVISPATARTHVSRVMVKLGARDRAQ 203 >gi|302518567|ref|ZP_07270909.1| two-component system regulator [Streptomyces sp. SPB78] gi|302427462|gb|EFK99277.1| two-component system regulator [Streptomyces sp. SPB78] Length = 226 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 162 RLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQG 221 >gi|254515317|ref|ZP_05127378.1| regulatory protein, LuxR [gamma proteobacterium NOR5-3] gi|219677560|gb|EED33925.1| regulatory protein, LuxR [gamma proteobacterium NOR5-3] Length = 203 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/51 (45%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L G GY + E+AE LG+S TV A L S KL +R+Q Sbjct: 142 GLTPREEEVALLVGRGYNNRELAEALGVSERTVKANLTSIFDKLGLRDRVQ 192 >gi|94495868|ref|ZP_01302447.1| hypothetical protein SKA58_14837 [Sphingomonas sp. SKA58] gi|94424560|gb|EAT09582.1| hypothetical protein SKA58_14837 [Sphingomonas sp. SKA58] Length = 163 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 32/51 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+E E CL+L G+ S+EIA +L +S HTV+ + ++ K + +R +A Sbjct: 8 LSEGEKQCLRLVAQGFNSKEIARQLHVSEHTVDQRVRTSLRKFNVPSRKEA 58 >gi|309777119|ref|ZP_07672083.1| putative transcriptional regulator, LuxR family [Erysipelotrichaceae bacterium 3_1_53] gi|308915128|gb|EFP60904.1| putative transcriptional regulator, LuxR family [Erysipelotrichaceae bacterium 3_1_53] Length = 550 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + LTERE + GY+ +E+AE GL V+T+ +Y+ KL+ NR + Sbjct: 487 RDYNSYGLTERELELVDYVLKGYSRKEMAEASGLKVNTIGSYMKKLYRKLNIHNRTELKE 546 Query: 227 KAIR 230 + I+ Sbjct: 547 RFIK 550 >gi|295705373|ref|YP_003598448.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294803032|gb|ADF40098.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 213 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G ++ +I+ +L +S HTV ++L + KL NR+Q + A + G Sbjct: 152 LSARELEVLQLVAKGLSNRDISAQLFISEHTVKSHLKNILSKLHLENRVQLTSYAFQNGL 211 Query: 234 I 234 + Sbjct: 212 M 212 >gi|264677722|ref|YP_003277628.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|299530281|ref|ZP_07043706.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|262208234|gb|ACY32332.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|298721652|gb|EFI62584.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 253 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 15/116 (12%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKR--------SSAARNLTERE 178 GY++ S F V+ +G + L+ + KR S + L+ RE Sbjct: 138 GYLVKNSWFGNYPQAVLQVVNGGASITPSLARRLLQRYDKRPATGAVPGSGMSDRLSSRE 197 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L++ G TS EI +L +S TVN ++ + KL R A+A+RF Y+ Sbjct: 198 CEVLRMVASGNTSAEIGVQLEISTMTVNTHIKNIYRKLQVRTR----AQAVRFAYL 249 >gi|239930061|ref|ZP_04687014.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438397|ref|ZP_06577787.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341292|gb|EFE68248.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 227 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE S L L G T+ EI +LG++V TV +++ + KL +R+QA A G Sbjct: 157 GLTARERSVLALVASGLTNAEIGGQLGITVGTVKSHVNALLRKLGLRDRVQATILAYDLG 216 >gi|229017580|ref|ZP_04174475.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229023797|ref|ZP_04180282.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228737482|gb|EEL87992.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228743723|gb|EEL93828.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 211 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 38/68 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK+ + LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA Sbjct: 142 KKKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQA 201 Query: 225 IAKAIRFG 232 A++ G Sbjct: 202 ALYAVKHG 209 >gi|227822540|ref|YP_002826512.1| putative transcriptional regulator, MerR family [Sinorhizobium fredii NGR234] gi|227341541|gb|ACP25759.1| putative transcriptional regulator, MerR family [Sinorhizobium fredii NGR234] Length = 224 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ E+ CL L G+ + IA+ +G+ + K DA NR QA+AKA+ G Sbjct: 160 HLSPIESECLGLMAAGHPAARIAQLMGMDITAALTLESGIIRKFDAQNRFQAVAKAVLAG 219 Query: 233 YIC 235 I Sbjct: 220 MIA 222 >gi|256379888|ref|YP_003103548.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924191|gb|ACU39702.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 218 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 3/62 (4%) Query: 166 KRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +R A R LT+RE L+L G G ++ ++ ++L +S TV Y+ KL NR+ Sbjct: 144 RRQEAMRQVQRLTDREVEVLELLGLGMSNADVGQRLHMSEATVKTYVSRLLAKLGLTNRV 203 Query: 223 QA 224 QA Sbjct: 204 QA 205 >gi|62737761|gb|AAX98178.1| response regulator [Streptomyces aizunensis] Length = 201 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 48/106 (45%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GY++ S L V A G + +LF+ R L++RE LQL G Sbjct: 96 GYLLKGSSRDELVQAVKAAARGETVLTPSLAPKLFRARVVEPPALSDREREVLQLVSLGL 155 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 T+ +I +L +S TV +L + KL +R A+ A++ G + Sbjct: 156 TNADIGRQLFISEATVKTHLLRSFKKLSVSDRTAAVITALKLGLLS 201 >gi|78062243|ref|YP_372151.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383] gi|77970128|gb|ABB11507.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. 383] Length = 913 Score = 39.7 bits (91), Expect = 0.34, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 39/68 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R++ L+ RE ++L G +++EIA LG++ TV +++ S +KL+ R +A+A Sbjct: 839 RAAQRDMLSVRERDIVELIAHGQSNKEIARTLGIAPETVKSHIKSLFMKLEVDKRARAVA 898 Query: 227 KAIRFGYI 234 A G + Sbjct: 899 VAQSLGLL 906 >gi|315180871|gb|ADT87785.1| response repressor in two-component regulatory system with UhpB [Vibrio furnissii NCTC 11218] Length = 202 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 2/85 (2%) Query: 141 LANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 L V A+G CY L L KK + A LT+RE ++ +G + +A +L Sbjct: 108 LVQAVRTSANGGCYLTPDIALRLATPKKAAVQADQLTKREKEVCRMLAEGLDVKTVAAQL 167 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQ 223 GLS TV+ + +A KL N ++ Sbjct: 168 GLSYKTVHVHRANAMDKLGVKNNVE 192 >gi|312796856|ref|YP_004029778.1| transcriptional regulator, LuxR family [Burkholderia rhizoxinica HKI 454] gi|312168631|emb|CBW75634.1| Transcriptional regulator, LuxR family [Burkholderia rhizoxinica HKI 454] Length = 294 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +++S++ L+ R+ L+L G T++ IA LG+S TV +LG+ KL A NR A Sbjct: 161 RRQSASPGLLSPRQEQILRLVHMGATNKSIARALGISEGTVKIHLGAIFEKLGATNRAAA 220 Query: 225 IA 226 +A Sbjct: 221 VA 222 >gi|312196703|ref|YP_004016764.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228039|gb|ADP80894.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 225 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A N+TERE L L +G + +IA++L +S TV ++L S K + R+Q + A Sbjct: 157 AGNVTEREREVLVLVAEGLANADIADRLSISPLTVKSHLSSLLAKHNLATRVQLVVLAYE 216 Query: 231 FGYIC 235 G + Sbjct: 217 SGLVI 221 >gi|229818603|ref|YP_002880129.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564516|gb|ACQ78367.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 221 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 56/126 (44%), Gaps = 11/126 (8%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----- 172 +A +R G +G+++ +E L V + A G T L + + + R Sbjct: 92 VAEAIRAG--ASGFLVKDTEPAELVRAVRVAAAGDALLSPTVTRRLLAQVAESTRAVKAV 149 Query: 173 ----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT+RE L +G +++EIA KL LS TV ++ KL A +R Q + A Sbjct: 150 PGLDHLTDREREVLVTVAEGLSNDEIAAKLFLSPSTVKTHVSRTMTKLAARDRAQLVVAA 209 Query: 229 IRFGYI 234 G + Sbjct: 210 YESGLV 215 >gi|53717636|ref|YP_106110.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|53722543|ref|YP_111528.1| two-component response regulator [Burkholderia pseudomallei K96243] gi|76819257|ref|YP_335719.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|52212957|emb|CAH38995.1| putative two-component response regulator [Burkholderia pseudomallei K96243] gi|52423606|gb|AAU47176.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|76583730|gb|ABA53204.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] Length = 223 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 32/66 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S LT RE L+L DG + EIA L +S TV+ + KL A N I Sbjct: 150 ASPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHW 209 Query: 228 AIRFGY 233 A R+GY Sbjct: 210 AYRYGY 215 >gi|88706477|ref|ZP_01104181.1| two component system response regulator [Congregibacter litoralis KT71] gi|88699189|gb|EAQ96304.1| two component system response regulator [Congregibacter litoralis KT71] Length = 225 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 31/60 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ GDG ++EIA LG+ TV ++ S KL +R QA+ A G Sbjct: 155 RLTGREQEALRCVGDGMNNQEIARHLGIGPATVKTHVSSLLSKLGLRDRAQAVVFAYESG 214 >gi|86138888|ref|ZP_01057460.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. MED193] gi|85824535|gb|EAQ44738.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseobacter sp. MED193] Length = 251 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT R+ L+ GDG T+++IA +GL+ T+ +L A L QA+ KA Sbjct: 184 RSLTNRQREALEWVGDGKTTQDIALLMGLTPATIEKHLRLARSSLSVETTAQAVLKA 240 >gi|83952281|ref|ZP_00961013.1| nitrate/nitrite regulatory protein [Roseovarius nubinhibens ISM] gi|83837287|gb|EAP76584.1| nitrate/nitrite regulatory protein [Roseovarius nubinhibens ISM] Length = 219 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 2/78 (2%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 V TD L +S A L+ RE L L DG T+ +I+ +LGLS +TV YL + K Sbjct: 144 VPTDILRRLTNDTSDA--LSRREHEILGLLVDGLTNFQISARLGLSENTVKYYLKAIYQK 201 Query: 216 LDAVNRIQAIAKAIRFGY 233 L +R AIAK + Y Sbjct: 202 LGVNSRGGAIAKYVAGTY 219 >gi|219669440|ref|YP_002459875.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539700|gb|ACL21439.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 204 Score = 39.7 bits (91), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 2/62 (3%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F L KK S A +LT RE Q+ GYT++EIA++L +S +T ++ S KL+ Sbjct: 136 FERLVKKNS--ADDLTAREKIIYQMMRKGYTNKEIAKQLSISTNTARNHVSSIMHKLNIS 193 Query: 220 NR 221 +R Sbjct: 194 SR 195 >gi|294667407|ref|ZP_06732625.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292602848|gb|EFF46281.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 923 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +ERE L GY++++IA L LS +TV +L + KLDA +R A+A+A++ G Sbjct: 849 FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSREGALAQALQRGL 908 Query: 234 I 234 + Sbjct: 909 L 909 >gi|294627134|ref|ZP_06705722.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598567|gb|EFF42716.1| transcriptional regulator [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 926 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +ERE L GY++++IA L LS +TV +L + KLDA +R A+A+A++ G Sbjct: 852 FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSREGALAQALQRGL 911 Query: 234 I 234 + Sbjct: 912 L 912 >gi|257055202|ref|YP_003133034.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256585074|gb|ACU96207.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 203 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+ A G T IAE+ L+ TV YL SA KL R +A +A G+ Sbjct: 143 LTERELELLRYAHTGSTVGAIAERARLAPGTVRNYLSSAMSKLGVSTRYEAARRAWEEGW 202 Query: 234 I 234 I Sbjct: 203 I 203 >gi|271967702|ref|YP_003341898.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510877|gb|ACZ89155.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 227 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ A +G EIA++L LS TV YL K+ A R++A+ A G+ Sbjct: 141 LTTRELEVLKAAAEGAPVREIADRLFLSGGTVRNYLSRILAKIGARTRVEAVTIAREAGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|221068174|ref|ZP_03544279.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220713197|gb|EED68565.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 253 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L+ RE L++ G TS EI L +S TVN ++ + KL ++++ A+ Sbjct: 187 SDMSDRLSSRECEVLRMVASGNTSAEIGASLEISTMTVNTHIKNIYRKL----QVRSRAQ 242 Query: 228 AIRFGYI 234 A+RF Y+ Sbjct: 243 AVRFAYL 249 >gi|166710233|ref|ZP_02241440.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 222 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 148 RDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|21244146|ref|NP_643728.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21109777|gb|AAM38264.1| transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] Length = 923 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +ERE L GY++++IA L LS +TV +L + KLDA +R A+A+A++ G Sbjct: 849 FSERELEVLAQLARGYSNKQIARCLHLSENTVKFHLKNLYRKLDARSREGALAQALQRGL 908 Query: 234 I 234 + Sbjct: 909 L 909 >gi|13488505|ref|NP_109512.1| two-component response regulator [Mesorhizobium loti MAFF303099] gi|14028259|dbj|BAB54851.1| two-component response regulator [Mesorhizobium loti MAFF303099] Length = 230 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R LTER+T L+L +G +++E+A +L L TV ++ KL+ NR +A Sbjct: 153 RQLTERQTEILRLVAEGLSNKEVALRLELQEKTVKHHMTGVLSKLNVRNRTEA 205 >gi|117921851|ref|YP_871043.1| LuxR family transcriptional regulator [Shewanella sp. ANA-3] gi|117614183|gb|ABK49637.1| transcriptional regulator, LuxR family [Shewanella sp. ANA-3] Length = 221 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + +Q G ++EIA +L +S HTV A++ S K + NR++ Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVE 205 >gi|120554504|ref|YP_958855.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8] gi|120324353|gb|ABM18668.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8] Length = 916 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L++RE L L G ++EIAE++ ++ TV A++ + KL R +A+AKA Sbjct: 847 AEPLSQREQEVLALIHQGLANKEIAERMSVAPATVKAHIRNLYGKLGVSRRTEALAKARE 906 Query: 231 FGYI 234 G + Sbjct: 907 VGLL 910 >gi|326381529|ref|ZP_08203223.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] gi|326199776|gb|EGD56956.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] Length = 209 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K ++AA +LT RE L DG ++ EIA++L +S TV ++ + KL +R QA Sbjct: 140 RKATAAAESLTPRELEVLLTVADGKSNGEIADELFVSEQTVKTHVSNMLTKLGLRDRAQA 199 Query: 225 I 225 + Sbjct: 200 V 200 >gi|322390963|ref|ZP_08064469.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321142338|gb|EFX37810.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 199 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ +E + L+ G +++EIA++L LS T+ Y+ + KLDA NR +A A G+ Sbjct: 139 LSPQEKAVLKEVAKGASNQEIADRLFLSNGTIRNYMSTILTKLDAENRTEAAKIAHEKGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|297159346|gb|ADI09058.1| putative two component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 233 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE + L G ++ EIA +L LS TV ++G KL+ +R+Q + A G Sbjct: 161 RLTDREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLELRDRVQVVVMAYESG 220 Query: 233 YI 234 + Sbjct: 221 LV 222 >gi|297192920|ref|ZP_06910318.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151558|gb|EFH31236.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A G Sbjct: 156 RLTEREREVMMLVAQGLSNGEIAGRLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETG 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|294500004|ref|YP_003563704.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349941|gb|ADE70270.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 213 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G ++ +I+ +L +S HTV ++L + KL NR+Q + A + G Sbjct: 152 LSARELEVLQLVAKGLSNRDISAQLFISEHTVKSHLKNILSKLHLENRVQLTSYAFQNGL 211 Query: 234 I 234 + Sbjct: 212 M 212 >gi|320011002|gb|ADW05852.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 226 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 9/81 (11%) Query: 164 FKKRSSAARN---------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 F +R AA + LT RE L+L G +++EIA +L L+ TV ++G Sbjct: 142 FARRKPAAPSGGPALRLNGLTPREREVLELIARGLSNQEIAARLVLAEQTVKTHIGRVLA 201 Query: 215 KLDAVNRIQAIAKAIRFGYIC 235 KL +R QA+ A G + Sbjct: 202 KLGLRDRAQAVIFAYESGLVT 222 >gi|295402434|ref|ZP_06812387.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|312112712|ref|YP_003991028.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975525|gb|EFG51150.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|311217813|gb|ADP76417.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 210 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 36/70 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK LT RE L L G T++EIA++L ++V TV ++ + KL +R QA Sbjct: 140 KKELLPHEELTNREMEVLLLMAQGKTNQEIADELFIAVKTVKVHVSNILSKLGVQDRTQA 199 Query: 225 IAKAIRFGYI 234 + A + + Sbjct: 200 VIYAFKHSLV 209 >gi|217969732|ref|YP_002354966.1| LuxR family transcriptional regulator [Thauera sp. MZ1T] gi|217507059|gb|ACK54070.1| two component transcriptional regulator, LuxR family [Thauera sp. MZ1T] Length = 226 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 35/66 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AA LT R+T L+L G G ++EIA +L LSV TV A+ +L + + +A Sbjct: 149 AASVLTPRQTEILELIGSGLGTKEIARRLDLSVKTVEAHRAQIMERLGVRDIANLLLEAA 208 Query: 230 RFGYIC 235 R G I Sbjct: 209 RRGLIT 214 >gi|254283973|ref|ZP_04958941.1| transcriptional regulator, LuxR family [gamma proteobacterium NOR51-B] gi|219680176|gb|EED36525.1| transcriptional regulator, LuxR family [gamma proteobacterium NOR51-B] Length = 206 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 32/60 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G G ++EIAE LG+S TV A+L + KL+ +R+Q R Y Sbjct: 146 LTHREYEVAALVGKGANNKEIAELLGVSERTVKAHLTAIFEKLELRDRVQLALAVNRLPY 205 >gi|163743111|ref|ZP_02150493.1| Possible LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161383528|gb|EDQ07915.1| Possible LuxR family protein [Phaeobacter gallaeciensis 2.10] Length = 205 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 35/68 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S + E+ ++L GY EIAE+LG+ + TV +A ++A + Q I+ Sbjct: 138 RESCRYTIKEKSKDVIRLMCTGYQDREIAERLGVKLETVRQRRQTAMQAVEATSTAQLIS 197 Query: 227 KAIRFGYI 234 I++G I Sbjct: 198 LVIKYGLI 205 >gi|298249917|ref|ZP_06973721.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547921|gb|EFH81788.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 219 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 32/52 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L++RE L+L DG ++ EIA+KL +S TV ++ + KL V+R QA Sbjct: 153 QLSDRELDVLRLIADGCSNSEIAQKLIISEKTVKGHVSNILGKLHMVDRTQA 204 >gi|297618086|ref|YP_003703245.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145923|gb|ADI02680.1| two component transcriptional regulator, LuxR family [Syntrophothermus lipocalidus DSM 12680] Length = 213 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 QV + + ++R LT+RE L+L GY+++E+A L +S TV +L S Sbjct: 133 QVAKELVRQNRRRDEM--KLTKRERDVLELLVKGYSNKEVAAALFISEKTVKNHLTSIFR 190 Query: 215 KLDAVNRIQAIAKAIR 230 KL+ +R QA+ A++ Sbjct: 191 KLEVKDRTQAVIYALK 206 >gi|282862429|ref|ZP_06271491.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562768|gb|EFB68308.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 247 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 31/59 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G+G T+ EIAE+L L+ TV + + KL RIQA A R Sbjct: 177 RLTPRERQILDLIGEGLTNREIAERLFLAEKTVKNRISAILAKLGVGRRIQAAMLAGRI 235 >gi|240169124|ref|ZP_04747783.1| transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 1092 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT E + L G+G ++++IA +L +S TV +L KLD +R+Q +A+R Sbjct: 1033 SLTPAEREVVSLVGEGLSNKDIAARLFVSPRTVQTHLTHVYTKLDLNSRVQLAQEAVR 1090 >gi|237801455|ref|ZP_04589916.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024314|gb|EGI04371.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 77 Score = 39.7 bits (91), Expect = 0.35, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + S A+NLT+RE L+ + +G T+ IA L L T++ ++ SA K+ N+ A Sbjct: 10 QPSPAKNLTQREIEVLKWSAEGKTAGAIAIILCLKERTIHFHIASAIQKMGVCNKTAAAV 69 Query: 227 KAIRFG 232 +A G Sbjct: 70 RAAMSG 75 >gi|228928225|ref|ZP_04091266.1| Lipoprotein-releasing system ATP-binding protein LolD 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229122706|ref|ZP_04251916.1| Lipoprotein-releasing system ATP-binding protein LolD 1 [Bacillus cereus 95/8201] gi|228660757|gb|EEL16387.1| Lipoprotein-releasing system ATP-binding protein LolD 1 [Bacillus cereus 95/8201] gi|228831272|gb|EEM76868.1| Lipoprotein-releasing system ATP-binding protein LolD 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 129 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL DGY +EIA L S T++ ++ KL+ + ++A+ K I+ GYI Sbjct: 68 EKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKLGYI 124 >gi|78060156|ref|YP_366731.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77964706|gb|ABB06087.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 237 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 26/48 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LTERE+ +L GYT +++A LG+ V TV +L K NR Sbjct: 182 LTERESDVARLVAAGYTDKDVARTLGIGVPTVRTHLRRVMAKKGVANR 229 >gi|87123539|ref|ZP_01079390.1| response regulator like protein [Synechococcus sp. RS9917] gi|86169259|gb|EAQ70515.1| response regulator like protein [Synechococcus sp. RS9917] Length = 231 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ER+ L L +G ++ EIA +L ++ +TV +L +L NR A++ A+R Sbjct: 170 LSERQLEILALVAEGLSNREIATQLQITANTVRDHLSEIMQRLGVGNRASAVSSALRLRL 229 Query: 234 I 234 I Sbjct: 230 I 230 >gi|86146693|ref|ZP_01065014.1| response regulator [Vibrio sp. MED222] gi|218676377|ref|YP_002395196.1| Nitrate/nitrite response regulator protein homolog [Vibrio splendidus LGP32] gi|85835540|gb|EAQ53677.1| response regulator [Vibrio sp. MED222] gi|218324645|emb|CAV26216.1| Nitrate/nitrite response regulator protein homolog [Vibrio splendidus LGP32] Length = 210 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 4/99 (4%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ +E L E++ +AH A V+ +L R+ LTERE LQ Sbjct: 101 DGYLLKDTEPDELI-ELLKQAHSGDKAYSSVVARYLNDADSRNDIFDQLTEREMQILQEV 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY +++IA+ L +S TV ++ S KL +R A Sbjct: 160 AKGYRNKQIADHLFISESTVKVHMKSLLKKLQVPSRTAA 198 >gi|67641422|ref|ZP_00440201.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|126444300|ref|YP_001063145.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126447142|ref|YP_001077967.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|126456927|ref|YP_001076095.1| LuxR family DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134281974|ref|ZP_01768680.1| BipB protein [Burkholderia pseudomallei 305] gi|166999878|ref|ZP_02265708.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|167725537|ref|ZP_02408773.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] gi|167743182|ref|ZP_02415956.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167820355|ref|ZP_02452035.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|167828726|ref|ZP_02460197.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167850181|ref|ZP_02475689.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] gi|167898791|ref|ZP_02486192.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167907119|ref|ZP_02494324.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] gi|167915473|ref|ZP_02502564.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|167923317|ref|ZP_02510408.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] gi|217425144|ref|ZP_03456639.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 576] gi|226196039|ref|ZP_03791625.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237507699|ref|ZP_04520414.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242312836|ref|ZP_04811853.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254176376|ref|ZP_04883034.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254185184|ref|ZP_04891773.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1655] gi|254186839|ref|ZP_04893355.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254204939|ref|ZP_04911292.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254263032|ref|ZP_04953897.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254301472|ref|ZP_04968916.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 406e] gi|126223791|gb|ABN87296.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126230695|gb|ABN94108.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|126239996|gb|ABO03108.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|134246503|gb|EBA46591.1| BipB protein [Burkholderia pseudomallei 305] gi|147754525|gb|EDK61589.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|157811119|gb|EDO88289.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157934523|gb|EDO90193.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|160697418|gb|EDP87388.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|184215776|gb|EDU12757.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1655] gi|217391749|gb|EEC31776.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 576] gi|225931932|gb|EEH27933.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|234999904|gb|EEP49328.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238522359|gb|EEP85804.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|242136075|gb|EES22478.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|243064182|gb|EES46368.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|254214034|gb|EET03419.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 214 Score = 39.7 bits (91), Expect = 0.35, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 32/66 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S LT RE L+L DG + EIA L +S TV+ + KL A N I Sbjct: 141 ASPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHW 200 Query: 228 AIRFGY 233 A R+GY Sbjct: 201 AYRYGY 206 >gi|302537227|ref|ZP_07289569.1| two-component system response regulator [Streptomyces sp. C] gi|302446122|gb|EFL17938.1| two-component system response regulator [Streptomyces sp. C] Length = 242 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G G ++ EIA L +S HTV +++G+ KL +RIQA+ A G Sbjct: 158 LTARERETLLHLGRGLSNAEIAAALVVSEHTVKSHVGNVLSKLGLRDRIQAVICAYETGL 217 Query: 234 I 234 I Sbjct: 218 I 218 >gi|289666156|ref|ZP_06487737.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289670749|ref|ZP_06491824.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 222 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 148 RDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|229012624|ref|ZP_04169797.1| Response regulator receiver [Bacillus mycoides DSM 2048] gi|228748647|gb|EEL98499.1| Response regulator receiver [Bacillus mycoides DSM 2048] Length = 215 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 32/57 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE LQL G + EIA+ L +S TV ++ + KLD +R QA AIR Sbjct: 154 LTKREIDVLQLLAYGKQNHEIAKILYVSEGTVKTHIHNILQKLDVTDRTQAAVMAIR 210 >gi|116625514|ref|YP_827670.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228676|gb|ABJ87385.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 191 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 4/59 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQ+ +G T++EIA L LSV+TV+A+ G KL+ + +I + +RF Sbjct: 130 LSSREREVLQMLAEGKTNKEIAVVLNLSVYTVDAHRGRIMEKLN----LHSINELVRFA 184 >gi|88706284|ref|ZP_01103990.1| two-component system response regulator [Congregibacter litoralis KT71] gi|88699435|gb|EAQ96548.1| two-component system response regulator [Congregibacter litoralis KT71] Length = 222 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 39/69 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ LT RE L + G +++EIA++L +S TV + GS +KL+ + Q + Sbjct: 151 RKGQQGETLTGRERQVLNMIVMGKSNKEIAQELNISPKTVEKHRGSVMLKLEVHSVAQLM 210 Query: 226 AKAIRFGYI 234 A+A++ G I Sbjct: 211 ARALKDGLI 219 >gi|113969064|ref|YP_732857.1| LuxR family transcriptional regulator [Shewanella sp. MR-4] gi|113883748|gb|ABI37800.1| transcriptional regulator, LuxR family [Shewanella sp. MR-4] Length = 221 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + +Q G ++EIA +L +S HTV A++ S K + NR++ Sbjct: 156 LTSRERTIIQFVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVE 205 >gi|158315190|ref|YP_001507698.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158110595|gb|ABW12792.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 226 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 6/90 (6%) Query: 151 GACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 A +I+ FL + ++A N LT RE + L +GY++ EIA++L +S T Sbjct: 131 AATRVLISRFLATPEPAATATVNPVALAALTAREREVMALVAEGYSNHEIADRLVISPLT 190 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ A KL+A +R Q + A + G + Sbjct: 191 ARTHVHRAMAKLNARDRAQLVVIAYQSGLL 220 >gi|329954461|ref|ZP_08295552.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] gi|328527429|gb|EGF54426.1| response regulator receiver domain protein [Bacteroides clarus YIT 12056] Length = 217 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Query: 166 KRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 KRS R LT RE L+ +G ++EIA++L +S +TV+ + KLDA N Sbjct: 142 KRSDEGRREELTLRELDVLKRISEGKNTQEIAQELCVSTNTVDTHRRHLMDKLDARNVAD 201 Query: 224 AIAKAIRFGYI 234 I AI G I Sbjct: 202 LIMTAISKGII 212 >gi|325917495|ref|ZP_08179701.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325536289|gb|EGD08079.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 222 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 148 RDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|239979247|ref|ZP_04701771.1| putative two-component system response regulator [Streptomyces albus J1074] Length = 227 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L+L G ++ EIAE+L L+ TV ++ KL +R QA+ A G Sbjct: 159 GLTPRETEVLELVARGLSNLEIAEQLVLAEQTVKTHISRILSKLGIRDRAQAVIAAYESG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|229590001|ref|YP_002872120.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361867|emb|CAY48766.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 221 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA LTERE L+ G T+ +I + LGLS TVN +L VKL R A + A Sbjct: 158 SARFQLTEREVEVLRWVACGKTNRDIGDILGLSPRTVNKHLEHVYVKLGVETRTAATSVA 217 Query: 229 I 229 + Sbjct: 218 L 218 >gi|227494681|ref|ZP_03924997.1| response regulator DegU family protein [Actinomyces coleocanis DSM 15436] gi|226831863|gb|EEH64246.1| response regulator DegU family protein [Actinomyces coleocanis DSM 15436] Length = 216 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 42/95 (44%), Gaps = 13/95 (13%) Query: 145 VIIEAHGA----CYQVITDFLELFKKRSSAAR---------NLTERETSCLQLAGDGYTS 191 V+ HGA + I D L +R+ R +LT E L L GDG ++ Sbjct: 110 VLKTVHGAEITEVIRAIADGRVLLDERTVTRRKADHGDPTADLTPAERKVLNLIGDGLSN 169 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 EI EKLG++ TV ++ S K+ R Q A Sbjct: 170 REIGEKLGVAEKTVKNHITSLLAKMGLQRRTQVAA 204 >gi|182437703|ref|YP_001825422.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778339|ref|ZP_08237604.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178466219|dbj|BAG20739.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658672|gb|EGE43518.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 221 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L + G G+++ EIA +L L+ TV ++ K A +R+QA+ Sbjct: 158 LTEREREILTVIGQGWSNSEIAARLHLAESTVKTHVTRILAKTGARDRVQAV 209 >gi|110834848|ref|YP_693707.1| LuxR family DNA-binding response regulator [Alcanivorax borkumensis SK2] gi|110647959|emb|CAL17435.1| DNA-binding response regulator, LuxR family [Alcanivorax borkumensis SK2] Length = 301 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LEL K A ++T RE+ L G T+ EIA+ L LS TVN +L KL N Sbjct: 230 LELLK----TALHVTHRESQVLVWIAHGKTNREIAQILELSPRTVNKHLEQIFRKLGVEN 285 Query: 221 RIQAIAKAIRF 231 R A A I++ Sbjct: 286 RTAAAAMVIQY 296 >gi|117919601|ref|YP_868793.1| two component LuxR family transcriptional regulator [Shewanella sp. ANA-3] gi|117611933|gb|ABK47387.1| two component transcriptional regulator, LuxR family [Shewanella sp. ANA-3] Length = 225 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 6/81 (7%) Query: 160 FLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 LE ++ S+ A++ L+ERE L G++++EIA + L+ TV ++ + Sbjct: 145 VLEQMQQSSATAQSGPTHDLLSEREREILGFMAGGFSNKEIANAVFLAEGTVKNHVSTIL 204 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KLD +R QA+ K ++ I Sbjct: 205 AKLDCRDRTQAVLKGLQLSLI 225 >gi|328883635|emb|CCA56874.1| putative two-component system response transcriptional regulator [Streptomyces venezuelae ATCC 10712] Length = 219 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 31/59 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NLTE+E L L G+G T+ I E+L L+ T+ Y+ S KL R QA A R Sbjct: 156 NLTEQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVARL 214 >gi|291451125|ref|ZP_06590515.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291354074|gb|EFE80976.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 223 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L+L G ++ EIAE+L L+ TV ++ KL +R QA+ A G Sbjct: 155 GLTPRETEVLELVARGLSNLEIAEQLVLAEQTVKTHISRILSKLGIRDRAQAVIAAYESG 214 Query: 233 YI 234 + Sbjct: 215 LV 216 >gi|289642814|ref|ZP_06474951.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289507383|gb|EFD28345.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 233 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LT RE L+L +G + EIA KL +S +TV ++ + KL +R++A+ A+R Sbjct: 167 APHLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVR 226 Query: 231 FG 232 G Sbjct: 227 QG 228 >gi|262275905|ref|ZP_06053714.1| nitrate/nitrite response regulator protein [Grimontia hollisae CIP 101886] gi|262219713|gb|EEY71029.1| nitrate/nitrite response regulator protein [Grimontia hollisae CIP 101886] Length = 209 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEF--LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY++ SE L++ + + A + + +LE + +S LTERE L+L Sbjct: 101 DGYLLKDSEPEELVMQLKSAMTGEKAYSEQVRTYLEKSRDHTSPLSVLTERERQILRLVA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G +++IAE L +S TV +L + KL +R+ A Sbjct: 161 KGLRNKQIAETLYISEATVKVHLKNLLKKLGVESRVAA 198 >gi|302537555|ref|ZP_07289897.1| two-component system response regulator [Streptomyces sp. C] gi|302446450|gb|EFL18266.1| two-component system response regulator [Streptomyces sp. C] Length = 220 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 157 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 216 Query: 232 GYI 234 G I Sbjct: 217 GII 219 >gi|240142741|ref|YP_002967254.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Methylobacterium extorquens AM1] gi|240012688|gb|ACS43913.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Methylobacterium extorquens AM1] Length = 220 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RET L+L G++++EIA ++ LSV +V Y A KL R + I A G+ Sbjct: 154 LSPRETEVLRLIAQGFSNKEIARRIDLSVKSVETYKARAAEKLGLRTRAEIIRYAAAQGW 213 Query: 234 I 234 + Sbjct: 214 L 214 >gi|239942450|ref|ZP_04694387.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988915|ref|ZP_04709579.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445905|ref|ZP_06585295.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348852|gb|EFE75756.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 221 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L + G G+++ EIA +L L+ TV ++ K A +R+QA+ Sbjct: 158 LTEREREILTVIGQGWSNTEIAARLHLAESTVKTHVTRILAKTGARDRVQAV 209 >gi|239932265|ref|ZP_04689218.1| two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440629|ref|ZP_06580019.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343524|gb|EFE70480.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 223 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|291302714|ref|YP_003513992.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571934|gb|ADD44899.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 218 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 7/114 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSC 181 +GY++ +E L + V + A G +VI F + + LT+RET Sbjct: 101 SGYLVKDAEPHELLHGVRVVARGDGLLSASVTRRVIESFADTTATDAPDIDGLTDRETEV 160 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L G ++ EIA +L +S T ++ KL A +R Q + A G + Sbjct: 161 LGLVARGLSNAEIAGRLSMSPATAKTHVNRTMTKLGARDRAQLVIFAYETGLVV 214 >gi|226357955|ref|YP_002787695.1| transcriptional regulator, LuxR family [Deinococcus deserti VCD115] gi|226320198|gb|ACO48191.1| putative transcriptional regulator, LuxR family [Deinococcus deserti VCD115] Length = 763 Score = 39.7 bits (91), Expect = 0.36, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 5/81 (6%) Query: 157 ITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 I +L L +R+S A LT RE + L G + + +A+ LG+S+ TV+ ++G Sbjct: 677 IDRWLNLPLERNSPATPPAQGGLTSRERDVVALVAAGMSDKRVAQVLGISMGTVSKHVGH 736 Query: 212 ATVKLDAVNRIQAIAKAIRFG 232 KL+ NR++ AI G Sbjct: 737 VLEKLELRNRVELARWAIEHG 757 >gi|242279313|ref|YP_002991442.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242122207|gb|ACS79903.1| two component transcriptional regulator, LuxR family [Desulfovibrio salexigens DSM 2638] Length = 217 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G +++ IAE++ +S TV ++ S KL NR++A A+R G Sbjct: 155 LTPRELDTLKLVAKGKSNKAIAEEMFVSEATVRTHMTSILSKLHLANRVEATLYALREG 213 >gi|116250340|ref|YP_766178.1| two-component response regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254988|emb|CAK06062.1| putative two-component response regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 215 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 3/62 (4%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +++ L + G+G +++IA +LG+S T+ A++ + +KLD +R QA+ I+ G Sbjct: 151 TLTPQQSRVLTMLGEGLLNKQIAYELGVSEATIKAHVSAILLKLDVDSRTQAV---IQLG 207 Query: 233 YI 234 I Sbjct: 208 KI 209 >gi|21244897|ref|NP_644479.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|294626449|ref|ZP_06705049.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667013|ref|ZP_06732241.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|21110608|gb|AAM39015.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|292599248|gb|EFF43385.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603230|gb|EFF46653.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 222 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 148 RDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|28900213|ref|NP_799868.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260365852|ref|ZP_05778348.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] gi|260880775|ref|ZP_05893130.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|260896515|ref|ZP_05905011.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|28808524|dbj|BAC61701.1| putative transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|308089272|gb|EFO38967.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|308092579|gb|EFO42274.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|308114985|gb|EFO52525.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] Length = 217 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G ++ +IA+ L +S HTV ++L S KL+ NR+QAI A R Sbjct: 158 LTRREMQVLSALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKR 214 >gi|333027751|ref|ZP_08455815.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332747603|gb|EGJ78044.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 216 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 152 RLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQG 211 >gi|325927987|ref|ZP_08189208.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|325541672|gb|EGD13193.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 222 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 148 RDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|297203085|ref|ZP_06920482.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197712083|gb|EDY56117.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 220 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 157 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 216 Query: 232 GYI 234 G I Sbjct: 217 GII 219 >gi|121606967|ref|YP_984296.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595936|gb|ABM39375.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 246 Score = 39.7 bits (91), Expect = 0.36, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G+T++EIA L +S HTV Y+ KL ++ +AI +A + G Sbjct: 184 LSSREMEVLQLITRGFTADEIARLLQVSSHTVQTYVRRIYSKLKVRSKAEAIYEARQQGI 243 Query: 234 I 234 + Sbjct: 244 L 244 >gi|297156497|gb|ADI06209.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 219 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 156 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 215 Query: 232 GYI 234 G I Sbjct: 216 GII 218 >gi|302561540|ref|ZP_07313882.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302479158|gb|EFL42251.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 223 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|84625936|ref|YP_453308.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188579161|ref|YP_001916090.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|84369876|dbj|BAE71034.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188523613|gb|ACD61558.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 222 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 148 RDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|78049832|ref|YP_366007.1| LuxR family two-component response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038262|emb|CAJ26007.1| two-component system response regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 222 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 148 RDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|299138245|ref|ZP_07031424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298599491|gb|EFI55650.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 162 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 14/134 (10%) Query: 105 SVRLEGGLLPFAGIAFPVRLGFH--KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE 162 SV L L+ AF + LGF +N I + ++ EV++ A E Sbjct: 38 SVELYSALVAILFAAFGIWLGFRITRNRETIRET---VVVREVLVPAEAPAP-------E 87 Query: 163 LFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 F ++ + L T RE L L G+++ EIA +L +S +TV + A KL A Sbjct: 88 PFAPNTAQQQTLGITARELETLTLIARGFSNREIATQLFVSENTVKTHCARAFDKLGAAR 147 Query: 221 RIQAIAKAIRFGYI 234 R QA+ + G + Sbjct: 148 RTQAVQRGKELGLL 161 >gi|320010128|gb|ADW04978.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 219 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G ++ EIA L +S TV ++ KL +R+QA+ A R G Sbjct: 158 LTPRELEVLRLIAEGLSNSEIAASLVISRETVKTFVSRILTKLGLRDRVQAVVYAYRQGL 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|257791491|ref|YP_003182097.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257475388|gb|ACV55708.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 214 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 7/108 (6%) Query: 130 GYVI--FTSEFLMLANEVIIEAHGACYQVITDFL--ELF---KKRSSAARNLTERETSCL 182 GYV+ TSE L+ A + E + +T L +L ++ + + L+ RE L Sbjct: 101 GYVLKNSTSEELIAAVHAVAEGGSYIHPKMTAMLTKQLVAGGEEEDRSYQQLSNRELEIL 160 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 QL G+T++EI+E++ LSV TV A+ KL R + A+R Sbjct: 161 QLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKTRADLVDYALR 208 >gi|239928247|ref|ZP_04685200.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291436576|ref|ZP_06575966.1| two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|302557677|ref|ZP_07310019.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|89274975|gb|ABD65938.1| two-component response regulator [Streptomyces fungicidicus] gi|291339471|gb|EFE66427.1| two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|302475295|gb|EFL38388.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 220 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 157 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 216 Query: 232 GYI 234 G I Sbjct: 217 GII 219 >gi|71733308|ref|YP_273861.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553861|gb|AAZ33072.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. phaseolicola 1448A] gi|320327729|gb|EFW83737.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. glycinea str. race 4] Length = 233 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ELF + A L+ RET L+ G + EIAE +S TV ++ + + KL+ Sbjct: 163 ELFPQ--PAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTA 220 Query: 222 IQAIAKAIRFGYI 234 QA+ KAI G + Sbjct: 221 KQAVYKAINIGMV 233 >gi|21233483|ref|NP_639400.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770447|ref|YP_245209.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|21115332|gb|AAM43282.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575779|gb|AAY51189.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] Length = 222 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 148 RDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|21224361|ref|NP_630140.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|256784453|ref|ZP_05522884.1| two-component regulator [Streptomyces lividans TK24] gi|289768332|ref|ZP_06527710.1| two-component system response regulator [Streptomyces lividans TK24] gi|3169043|emb|CAA19241.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|289698531|gb|EFD65960.1| two-component system response regulator [Streptomyces lividans TK24] Length = 220 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 157 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 216 Query: 232 GYI 234 G I Sbjct: 217 GII 219 >gi|307328232|ref|ZP_07607410.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886066|gb|EFN17074.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 219 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G ++ EIA L +S TV ++ KL +R+QA+ A R G Sbjct: 158 LTPRELEVLRLIANGLSNSEIAATLVISQETVKTFVSRILAKLGLRDRVQAVVYAYRQGL 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|302555046|ref|ZP_07307388.1| luxR family two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472664|gb|EFL35757.1| luxR family two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 233 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +L+ RE L L GDG T+ EI +KL LS TV ++ KL R+QA Sbjct: 164 SLSPREREILALIGDGLTNREIGKKLYLSEKTVKNHISRLLAKLGVQRRVQA 215 >gi|302546669|ref|ZP_07299011.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|307330767|ref|ZP_07609903.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|302464287|gb|EFL27380.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] gi|306883570|gb|EFN14620.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 223 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|302545230|ref|ZP_07297572.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462848|gb|EFL25941.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERET L L G ++ EIA +L ++ TV ++G +KL +R QA A G Sbjct: 159 DLTERETEVLALIAQGLSNAEIATRLVVAEQTVKTHVGRILLKLGLRDRTQAAVFAYESG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|223041628|ref|ZP_03611826.1| transcriptional regulatory protein UhpA [Actinobacillus minor 202] gi|223017557|gb|EEF15970.1| transcriptional regulatory protein UhpA [Actinobacillus minor 202] Length = 201 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +S LT+RE +L G+ ++EIA+KL LS TV+ + +A KL+ N ++ Sbjct: 134 RHNSPIEQLTKREREICELLIQGFDAKEIADKLNLSFKTVHVHRANAMSKLNVKNNVE 191 >gi|94968718|ref|YP_590766.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550768|gb|ABF40692.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 208 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 4/116 (3%) Query: 122 VRLGFHK--NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 VRL NGY++ ++ L L V A+G V+ +E + + + LT RE Sbjct: 93 VRLALEAGANGYILKSAIDLDLIQAVRRVANGET--VLDPKVEKPTLKGNKSMGLTNREL 150 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 LQL G +++EIA L LSV+TV+ + + L N + + AI+ G + Sbjct: 151 EILQLIVSGKSNKEIASDLSLSVNTVSVHRANIMEGLGIHNTAELVVYAIKNGLVT 206 >gi|89894764|ref|YP_518251.1| hypothetical protein DSY2018 [Desulfitobacterium hafniense Y51] gi|89334212|dbj|BAE83807.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 228 Score = 39.7 bits (91), Expect = 0.37, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 34/54 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+L G S+EIAE L ++ TV+ ++G+ +KL+ +R++ + K Sbjct: 171 LTSREVEILKLVVTGLRSKEIAENLRITKRTVDYHIGNILLKLEVKSRMEIVLK 224 >gi|329940179|ref|ZP_08289461.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301005|gb|EGG44901.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 219 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 156 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 215 Query: 232 GYI 234 G I Sbjct: 216 GII 218 >gi|317484063|ref|ZP_07942996.1| luxR family Bacterial regulatory protein [Bilophila wadsworthia 3_1_6] gi|316924707|gb|EFV45860.1| luxR family Bacterial regulatory protein [Bilophila wadsworthia 3_1_6] Length = 282 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 39/65 (60%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 +I +++ + SS A +LT +E L+L +G ++++IA KL LSV T++ + S K Sbjct: 199 MIISYVDGNAEASSKADSLTPKEKMVLKLIAEGNSNKDIAAKLNLSVKTIDTHRTSFMKK 258 Query: 216 LDAVN 220 LD N Sbjct: 259 LDLHN 263 >gi|313897472|ref|ZP_07831015.1| response regulator receiver domain protein [Clostridium sp. HGF2] gi|312957842|gb|EFR39467.1| response regulator receiver domain protein [Clostridium sp. HGF2] Length = 210 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 35/67 (52%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + D L+ K + + +L ERE +QL G ++E+A+ L LS TV YL S KL Sbjct: 130 LPDLLKQHTKETLCSYDLNERELHFIQLVAKGLNNKELAQTLFLSEGTVRNYLSSLLEKL 189 Query: 217 DAVNRIQ 223 +R Q Sbjct: 190 QLRDRTQ 196 >gi|254461366|ref|ZP_05074782.1| DNA-binding response regulator, LuxR family [Rhodobacterales bacterium HTCC2083] gi|255262610|ref|ZP_05341952.1| DNA-binding response regulator, LuxR family [Thalassiobium sp. R2A62] gi|206677955|gb|EDZ42442.1| DNA-binding response regulator, LuxR family [Rhodobacteraceae bacterium HTCC2083] gi|255104945|gb|EET47619.1| DNA-binding response regulator, LuxR family [Thalassiobium sp. R2A62] Length = 216 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 42/75 (56%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A Q++ FL++ + +S LT+RE + L+ G ++ ++A + +S +TV +L + Sbjct: 127 AAGQMVFPFLDVRELQSDPIHQLTKREKALLEALSRGLSNRQLAAEFEISANTVKFHLSN 186 Query: 212 ATVKLDAVNRIQAIA 226 KL +R QA+A Sbjct: 187 LYEKLSVTSRTQAVA 201 >gi|186681434|ref|YP_001864630.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463886|gb|ACC79687.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 239 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++S + LT RE L+L G + EIA++L L+V TV ++ KL +R QA Sbjct: 170 EKSIVSYPLTHREMDVLELIVAGCDNAEIAKRLYLTVGTVKTHVRGILNKLCVADRTQAA 229 Query: 226 AKAIRFGYI 234 +A+R G + Sbjct: 230 VRALRAGLV 238 >gi|317475733|ref|ZP_07934992.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] gi|316908116|gb|EFV29811.1| luxR family Bacterial regulatory protein [Bacteroides eggerthii 1_2_48FAA] Length = 70 Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE LQ G + EIA LG+S +TV + K A N I + KA+ G++ Sbjct: 8 TKREQDVLQAVAKGLNTHEIAHLLGISENTVETFRKKLLSKFGAKNAIDLVVKAVSQGWV 67 >gi|325675648|ref|ZP_08155332.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|325553619|gb|EGD23297.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 222 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S ++T RE L+ G ++ EIA+K +S TV ++G K + +R+QA+ A Sbjct: 148 SLPEDMTPREIEVLEAMAHGLSNSEIAQKFVVSEATVKTHVGRVLSKTGSRDRVQAVVYA 207 Query: 229 IRFGYI 234 + G + Sbjct: 208 FQVGLV 213 >gi|282866538|ref|ZP_06275581.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282558585|gb|EFB64144.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 220 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 157 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 216 Query: 232 GYI 234 G I Sbjct: 217 GII 219 >gi|229051230|ref|ZP_04194758.1| Response regulator receiver [Bacillus cereus AH676] gi|228722128|gb|EEL73545.1| Response regulator receiver [Bacillus cereus AH676] Length = 214 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 32/57 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE LQL G + EIA+ L +S TV ++ + KLD +R QA AIR Sbjct: 153 LTKREIDVLQLLAYGKQNHEIAKILFVSDGTVKTHIHNILQKLDVTDRTQAAVMAIR 209 >gi|254412403|ref|ZP_05026177.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180713|gb|EDX75703.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 271 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G ++ IAEKL ++V TV ++ + KL +R QA A+R G Sbjct: 210 LTERELEVLELIVAGASNAAIAEKLYITVGTVKTHVRNILNKLCVDDRTQAAVHALRSGL 269 Query: 234 IC 235 I Sbjct: 270 IT 271 >gi|150397182|ref|YP_001327649.1| two component LuxR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150028697|gb|ABR60814.1| two component transcriptional regulator, LuxR family [Sinorhizobium medicae WSM419] Length = 226 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 V++ E +R + + LT RE +LA G S EIA +LG++ TV +L S K Sbjct: 146 VVSRIRERDAERRAVLQKLTPRELEISRLAASGLRSREIAARLGIAPGTVKLHLHSVYGK 205 Query: 216 LDAVNRIQ--AIAKAIRFGY 233 L+ R++ +A+ ++ G+ Sbjct: 206 LNLTTRVELANLAQRLQLGH 225 >gi|37521252|ref|NP_924629.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212248|dbj|BAC89624.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 210 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G T++EIA L + TV A++ + K+ A +R QA AIR G Sbjct: 147 LTARELEVLHLVVKGQTNKEIAASLFIGEGTVRAHMNNILAKMGAHDRTQAATLAIRRGL 206 Query: 234 I 234 + Sbjct: 207 V 207 >gi|152968160|ref|YP_001363944.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151362677|gb|ABS05680.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 32/63 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++ EIA +L +S TV Y+ KL +R+QA+ A R G Sbjct: 162 GLTPREVEVLGLIARGLSNAEIAAELVISHETVKTYVSRILAKLGLRDRVQAVVLAYRTG 221 Query: 233 YIC 235 + Sbjct: 222 LVA 224 >gi|302554896|ref|ZP_07307238.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472514|gb|EFL35607.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 157 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 216 Query: 232 GYI 234 G I Sbjct: 217 GII 219 >gi|239945114|ref|ZP_04697051.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239991577|ref|ZP_04712241.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291448577|ref|ZP_06587967.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291351524|gb|EFE78428.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 220 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 157 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 216 Query: 232 GYI 234 G I Sbjct: 217 GII 219 >gi|183982964|ref|YP_001851255.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183176290|gb|ACC41400.1| transcriptional regulatory protein [Mycobacterium marinum M] Length = 1078 Score = 39.7 bits (91), Expect = 0.38, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 6/86 (6%) Query: 149 AHGACYQV--ITDFLELF----KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 AHGA + D+L+ K+ +S LT E + ++L G G ++++IA++L LS Sbjct: 989 AHGAAFSAEEAIDYLQHRRGERKRATSGWAALTRAELNVVRLVGQGLSNKDIAQRLFLSP 1048 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKA 228 TV +L KL +R+Q +A Sbjct: 1049 RTVQTHLTHVYTKLGFNSRVQLAQQA 1074 >gi|241202973|ref|YP_002974069.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856863|gb|ACS54530.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 215 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 3/62 (4%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +++ L + G+G +++IA +LG+S T+ A++ + +KLD +R QA+ I+ G Sbjct: 151 TLTPQQSRVLTMLGEGLLNKQIAYELGVSEATIKAHVSAILLKLDVDSRTQAV---IQLG 207 Query: 233 YI 234 I Sbjct: 208 KI 209 >gi|29833213|ref|NP_827847.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29610335|dbj|BAC74382.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 223 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|56459266|ref|YP_154547.1| response regulator [Idiomarina loihiensis L2TR] gi|56178276|gb|AAV80998.1| Response regulator, LuxR family (CheY-HTH) [Idiomarina loihiensis L2TR] Length = 214 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LT +E ++L G ++EIAE L +S HTV +L S K A NR++ Sbjct: 153 SLTPQELKVIELVATGARNKEIAEHLNISAHTVKTHLSSIFRKTGARNRVE 203 >gi|56415510|ref|YP_152585.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197364436|ref|YP_002144073.1| hypothetical protein SSPA3234 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129767|gb|AAV79273.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095913|emb|CAR61490.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 200 Score = 39.7 bits (91), Expect = 0.38, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D+L + S + L+ R+ LQ+ G ++++I L +S TV A+L S +LD Sbjct: 127 DWLNSTELESRDIKALSARQREILQMLAAGESNKQIGRALNISTRTVKAHLESLYRRLDV 186 Query: 219 VNRIQA 224 NR QA Sbjct: 187 KNRTQA 192 >gi|320095298|ref|ZP_08026990.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319977771|gb|EFW09422.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 222 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G+++ + LA+ V A G T +E + +S LTERE+ L+ G Sbjct: 120 TGFMVKDAPVDQLADAVRRVAKGLRVVDPTLAVETLSRGTS---PLTERESDVLRAVSTG 176 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T +IA ++ LS TV ++ SA +K +A R +A+ A G++ Sbjct: 177 GTIADIAREMRLSQGTVRNHVSSAMLKTEARTRAEAVRIATESGWL 222 >gi|312863730|ref|ZP_07723968.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] gi|311101266|gb|EFQ59471.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] Length = 214 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%) Query: 130 GYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY++ TS + N + + A + + ++ +LT RE L L Sbjct: 103 GYMLKTSSATEILNSIRKVYRGEEAIETEVDNKIKYHDSHPDLHDDLTARERDILALLAK 162 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 GY ++ IA +L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 163 GYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVS 210 >gi|300694626|ref|YP_003750599.1| transcription regulator protein, luxr family [Ralstonia solanacearum PSI07] gi|299076663|emb|CBJ36001.1| putative transcription regulator protein, LuxR family [Ralstonia solanacearum PSI07] Length = 252 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 35/74 (47%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 HGA + + +K S A LTERE L G G ++ EIA+ + S TV YL Sbjct: 159 HGALLRAVASVENDLQKASQALATLTEREREVALLIGQGRSNAEIAQLVCKSESTVKHYL 218 Query: 210 GSATVKLDAVNRIQ 223 S K NR++ Sbjct: 219 SSIMDKTGCENRVR 232 >gi|291571364|dbj|BAI93636.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 216 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 33/52 (63%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++LT RE L+L G GY++ EIA++L +S TV ++ S +L+ +R Q Sbjct: 152 QDLTPRELEVLRLIGKGYSNREIAQELFISERTVKNHVSSILSRLNLRDRTQ 203 >gi|182435268|ref|YP_001822987.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326775907|ref|ZP_08235172.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178463784|dbj|BAG18304.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656240|gb|EGE41086.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 220 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 157 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 216 Query: 232 GYI 234 G I Sbjct: 217 GII 219 >gi|167840151|ref|ZP_02466835.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 214 Score = 39.7 bits (91), Expect = 0.39, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 31/65 (47%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT RE L+L DG + EIA L +S TV+ + KL A N I A Sbjct: 142 SPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWA 201 Query: 229 IRFGY 233 R+GY Sbjct: 202 YRYGY 206 >gi|320007816|gb|ADW02666.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 220 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 157 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 216 Query: 232 GYI 234 G I Sbjct: 217 GII 219 >gi|307325178|ref|ZP_07604382.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889324|gb|EFN20306.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 219 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 156 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 215 Query: 232 GYI 234 G I Sbjct: 216 GII 218 >gi|291444045|ref|ZP_06583435.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346992|gb|EFE73896.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 214 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 149 APQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 208 Query: 231 FG 232 G Sbjct: 209 RG 210 >gi|302533532|ref|ZP_07285874.1| two-component system response regulator [Streptomyces sp. C] gi|302442427|gb|EFL14243.1| two-component system response regulator [Streptomyces sp. C] Length = 223 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|163761326|ref|ZP_02168401.1| hypothetical protein HPDFL43_21749 [Hoeflea phototrophica DFL-43] gi|162281483|gb|EDQ31779.1| hypothetical protein HPDFL43_21749 [Hoeflea phototrophica DFL-43] Length = 75 Score = 39.3 bits (90), Expect = 0.39, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT E +CL+ + + E+ + LS V++ + +A +KL+ NR+ AIAKA R G Sbjct: 10 LTTIELNCLRGVAEAKSELEVGLECELSPAEVSSIISTAVIKLNCPNRVAAIAKAARLGL 69 Query: 234 I 234 + Sbjct: 70 L 70 >gi|330830262|ref|YP_004393214.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Aeromonas veronii B565] gi|328805398|gb|AEB50597.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Aeromonas veronii B565] Length = 196 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 5/76 (6%) Query: 149 AHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A G CY ++ +K +S++R+ LT RE QL G + IAE+LGLS TV+ Sbjct: 116 AQGGCYLTP----DIAQKLASSSRDPLTNREREIAQLLAQGLEVKAIAEQLGLSPKTVHV 171 Query: 208 YLGSATVKLDAVNRIQ 223 + + KL N ++ Sbjct: 172 HRANLMDKLKVSNNVE 187 >gi|317490641|ref|ZP_07949111.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325831510|ref|ZP_08164764.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1] gi|316910265|gb|EFV31904.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325486764|gb|EGC89212.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1] Length = 214 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 7/108 (6%) Query: 130 GYVI--FTSEFLMLANEVIIEAHGACYQVITDFL--ELF---KKRSSAARNLTERETSCL 182 GYV+ TSE L+ A + E + +T L +L ++ + + L+ RE L Sbjct: 101 GYVLKNSTSEELIAAVHAVAEGGSYIHPKMTAMLTKQLVAGGEEEDRSYQQLSNRELEIL 160 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 QL G+T++EI+E++ LSV TV A+ KL R + A+R Sbjct: 161 QLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKTRADLVDYALR 208 >gi|298251689|ref|ZP_06975492.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546281|gb|EFH80149.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +E+ +LG++ TV +YL S KL+ +R A+A AI G Sbjct: 157 HLTAREREVLAGIASGERGKEVGARLGITRRTVESYLNSIYTKLNVDSRAAAVAIAIEHG 216 Query: 233 YI 234 + Sbjct: 217 LL 218 >gi|297579900|ref|ZP_06941827.1| predicted protein [Vibrio cholerae RC385] gi|297535546|gb|EFH74380.1| predicted protein [Vibrio cholerae RC385] Length = 224 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L G ++ EI+ L +S TV +L + KL+ NR AIAKAI G+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221 >gi|290961118|ref|YP_003492300.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260650644|emb|CBG73760.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 215 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 150 APQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 209 Query: 231 FG 232 G Sbjct: 210 RG 211 >gi|254000165|ref|YP_003052228.1| two component LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986844|gb|ACT51701.1| two component transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] Length = 232 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 7/109 (6%) Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARN---LTERETSC 181 +GY++ E L + + +I +T+ L+ L + R+ A + LT+RE Sbjct: 122 DGYLLKDMEPEDLCASLKKVISGMTVIQDSLTEVLKQALLEPRTRKADDDVALTDREQEI 181 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LQ DG ++ IA KLG+S TV ++ KL +R++A A R Sbjct: 182 LQCLADGLNNKTIARKLGISDTTVKVHIKHLLSKLKLTSRLEAAVWAHR 230 >gi|297191334|ref|ZP_06908732.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720655|gb|EDY64563.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 220 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 157 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 216 Query: 232 GYI 234 G I Sbjct: 217 GII 219 >gi|196228529|ref|ZP_03127396.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196227932|gb|EDY22435.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 209 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 52/117 (44%), Gaps = 4/117 (3%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 I VR G GYV+ ++E + + I HG L R+ ++ R Sbjct: 94 IHLAVRAG--AAGYVLKSAERGEII-QAIRAVHGGKSYFSPGLEALLHDRARKV-EISPR 149 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L A G ++EI + LG+S TV ++ KLDA +R A+ AI+ G I Sbjct: 150 EREVLVRAAAGERNKEIGDHLGISEATVKVFMARIFQKLDARDRAHAVVIAIKRGII 206 >gi|56476411|ref|YP_158000.1| LuxR family transcriptional regulator [Aromatoleum aromaticum EbN1] gi|56312454|emb|CAI07099.1| putative LuxR-family transcriptional regulator [Aromatoleum aromaticum EbN1] Length = 207 Score = 39.3 bits (90), Expect = 0.39, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R NL+ RE+ + G +++EIA KLG++ TV A+LG+ KL +R+Q + Sbjct: 136 RGPLPANLSARESEVARETAAGLSNKEIASKLGITERTVKAHLGAIFDKLGVRDRLQLVL 195 Query: 227 K 227 + Sbjct: 196 R 196 >gi|328885874|emb|CCA59113.1| two-component regulator [Streptomyces venezuelae ATCC 10712] Length = 221 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 158 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 217 Query: 232 GYI 234 G I Sbjct: 218 GII 220 >gi|313834382|gb|EFS72096.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] Length = 218 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE +G T++ IA +L +S TV A+L + KLD +R++ R GY Sbjct: 156 LTDREREVAIAVAEGLTNDAIAARLNVSASTVKAHLSTIQTKLDVDSRVRIAVLVERAGY 215 Query: 234 IC 235 + Sbjct: 216 LA 217 >gi|304399203|ref|ZP_07381070.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304353257|gb|EFM17637.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 215 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL DG T++ IA KL +S TV ++ K++ +R++A A++ G Sbjct: 155 LTRREREILQLISDGMTNKAIARKLDISESTVKVHVKYLLKKMNLKSRLEAAVWALQNG 213 >gi|298486193|ref|ZP_07004256.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159200|gb|EFI00258.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|306431677|emb|CBM41481.1| N-acyl homoserine lactone sensor/regulator [Pseudomonas savastanoi pv. savastanoi] Length = 247 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ELF + A L+ RET L+ G + EIAE +S TV ++ + + KL+ Sbjct: 177 ELFPQ--PAQCKLSTRETGVLKWMAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTA 234 Query: 222 IQAIAKAIRFGYI 234 QA+ KAI G + Sbjct: 235 KQAVYKAINMGMV 247 >gi|290958798|ref|YP_003489980.1| two component response regulator [Streptomyces scabiei 87.22] gi|260648324|emb|CBG71435.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 256 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ EIA +L +S HTV ++G+ KL +R+QA+ A G Sbjct: 167 LTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRVQAVICAYETGL 226 Query: 234 IC 235 I Sbjct: 227 IA 228 >gi|240948096|ref|ZP_04752506.1| CitB protein [Actinobacillus minor NM305] gi|240297576|gb|EER48068.1| CitB protein [Actinobacillus minor NM305] Length = 201 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + +S LT+RE +L G+ ++EIA+KL LS TV+ + +A KL+ N ++ Sbjct: 134 RNNSPIEQLTKREREICELLIQGFDAKEIADKLNLSFKTVHVHRANAMSKLNVKNNVE 191 >gi|291302519|ref|YP_003513797.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571739|gb|ADD44704.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 220 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 29/50 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+++E + G ++ EI + L LS TV AY+ SA KLD NRIQ Sbjct: 161 LSDKERDVARAVAKGLSNSEIGQSLYLSSGTVKAYVSSALSKLDLTNRIQ 210 >gi|255598987|ref|XP_002537125.1| conserved hypothetical protein [Ricinus communis] gi|223517394|gb|EEF25258.1| conserved hypothetical protein [Ricinus communis] Length = 277 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%) Query: 168 SSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 S+ ARN L++RE L+ G T+ EI + +S T+ ++ + KLD NR Sbjct: 202 STTARNGRIKPLSKRELEVLEWLQAGKTNWEIGNIMQVSPLTIKNHVQNILRKLDVENRS 261 Query: 223 QAIAKAIRFGYI 234 QA +KA++ G I Sbjct: 262 QAASKALKLGLI 273 >gi|182435087|ref|YP_001822806.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463603|dbj|BAG18123.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 213 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + + A LT RE LQL G+G ++ I+++L LS TV ++L KL +R Sbjct: 139 RLMDRMRTPAEALTRRELEVLQLVGEGLSNLRISKRLFLSQATVKSHLVHIYAKLGVDSR 198 Query: 222 IQAIAKA 228 A+A A Sbjct: 199 TSAVAAA 205 >gi|168184300|ref|ZP_02618964.1| DNA-binding response regulator, LuxR family [Clostridium botulinum Bf] gi|237794731|ref|YP_002862283.1| LuxR family DNA-binding response regulator [Clostridium botulinum Ba4 str. 657] gi|182672663|gb|EDT84624.1| DNA-binding response regulator, LuxR family [Clostridium botulinum Bf] gi|229261330|gb|ACQ52363.1| DNA-binding response regulator, LuxR family [Clostridium botulinum Ba4 str. 657] Length = 217 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 20/115 (17%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--------VITDFL-------ELFKKRS 168 L F +GY++ S +NE+I E AC + V + + EL Sbjct: 96 LKFGASGYLLKDS-----SNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKELNDDDI 150 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S NLTERE + ++ +G +++EIAE++ LS T+ + + KLD +R Q Sbjct: 151 SLKYNLTEREINIIRQIANGLSNKEIAERIYLSEGTIKNNISTILSKLDLRDRTQ 205 >gi|55821406|ref|YP_139848.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55737391|gb|AAV61033.1| response regulator (homolog to RR03 Spn) [Streptococcus thermophilus LMG 18311] Length = 214 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 2/108 (1%) Query: 130 GYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY++ TS + N + + A + + ++ + +LT RE L L Sbjct: 103 GYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPNLHDDLTARERDILALLAK 162 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 GY ++ IA +L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 163 GYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVS 210 >gi|302537693|ref|ZP_07290035.1| predicted protein [Streptomyces sp. C] gi|302446588|gb|EFL18404.1| predicted protein [Streptomyces sp. C] Length = 323 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+E++ + L++ G E++A LG+S+ TV+ L ++ A +R +A +A R G+ Sbjct: 262 LSEQQRAALKMLASGMKDEKVARNLGVSLRTVSRMLSELMQEMGASSRFEAGVRAQRLGW 321 Query: 234 I 234 + Sbjct: 322 L 322 >gi|298252720|ref|ZP_06976514.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis 5-1] gi|297533084|gb|EFH71968.1| response regulator (CheY receiver/HTH DNA-binding) [Gardnerella vaginalis 5-1] Length = 160 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L++RE ++L G+T++EI ++L ++ TV ++ A KL NR Q IA+ + Sbjct: 96 SLSKREKEVIELFATGFTADEICKQLHITKGTVETFINRACRKLHVKNRNQLIAELLHEQ 155 Query: 233 Y 233 Y Sbjct: 156 Y 156 >gi|311113859|ref|YP_003985081.1| DegU family transcriptional regulator [Rothia dentocariosa ATCC 17931] gi|310945353|gb|ADP41647.1| transcriptional regulatory protein DegU [Rothia dentocariosa ATCC 17931] Length = 241 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 34/64 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ RE L+L G ++ EI+ L LS T+ ++ KLDA +R+QA+ A Sbjct: 178 QTLSPREHEVLRLIAQGLSNVEISRALVLSEATIKTHVSHVLSKLDARDRVQAVIMAYEA 237 Query: 232 GYIC 235 G + Sbjct: 238 GIVS 241 >gi|253999547|ref|YP_003051610.1| LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986226|gb|ACT51083.1| transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] Length = 265 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE ++ +G T++EI L +S TV +L KLD +NR QA++K Sbjct: 204 LSSREIEIMEWVRNGKTNQEIGMILDISSFTVKNHLQRIFKKLDVLNRAQAVSK 257 >gi|254523232|ref|ZP_05135287.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219720823|gb|EED39348.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 216 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE + L+L GY+++EIA L L+ TV Y+ + KL +R +A+ KAI I Sbjct: 158 EREVAILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 216 >gi|29828772|ref|NP_823406.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29605877|dbj|BAC69941.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 220 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 157 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 216 Query: 232 GYI 234 G I Sbjct: 217 GII 219 >gi|15806567|ref|NP_295281.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6459320|gb|AAF11120.1|AE001999_4 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 225 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 7/82 (8%) Query: 152 ACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A +++ DF RS R +LT +ET+ LQL G ++++IA + G+S TV ++ Sbjct: 141 AARRLVRDF------RSPEMRESLTPKETAVLQLLARGQSNKDIAAEQGVSEATVKTHVS 194 Query: 211 SATVKLDAVNRIQAIAKAIRFG 232 KL +R QA A+++G Sbjct: 195 RLLSKLGLDSRTQAALYALKYG 216 >gi|94313908|ref|YP_587117.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357760|gb|ABF11848.1| two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 237 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE+ L L GYT EIA L +SV+TV A++ + KL +R +A+ +A + G Sbjct: 174 LSARESEILDLVARGYTYAEIARHLSISVNTVAAHIRNIYGKLAVNSRSEAVFEAHKLGL 233 Query: 234 I 234 + Sbjct: 234 L 234 >gi|330466045|ref|YP_004403788.1| ATP-dependent transcriptional regulator, malt-like, luxr family protein [Verrucosispora maris AB-18-032] gi|328809016|gb|AEB43188.1| ATP-dependent transcriptional regulator, malt-like, luxr family protein [Verrucosispora maris AB-18-032] Length = 882 Score = 39.3 bits (90), Expect = 0.40, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 6/78 (7%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + +A+E + G C V T L +A LTERE +LA DG TS IAE+L Sbjct: 787 IAVASERLAVLLGCCDLVQTPALR------AATPVLTEREWQVARLAADGETSRAIAEQL 840 Query: 199 GLSVHTVNAYLGSATVKL 216 LS TV +L KL Sbjct: 841 FLSARTVENHLQRVYTKL 858 >gi|269837581|ref|YP_003319809.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786844|gb|ACZ38987.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 211 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G +++EIA +L +S TV ++L KLD +R A+ A+ G Sbjct: 147 LTPREIDVLRLVAQGASNKEIAARLSISQATVKSHLIHIFDKLDVDDRTAAVTVALERGI 206 Query: 234 I 234 I Sbjct: 207 I 207 >gi|229820103|ref|YP_002881629.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566016|gb|ACQ79867.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 208 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%) Query: 152 ACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +V+ D L ++R++ LT E L+L +G T+ +IAE+LG++ TV + Sbjct: 120 AAGRVLLDERSLTRRRAAHEDPTSALTPSERRVLELVAEGLTNRDIAERLGVAEKTVKNH 179 Query: 209 LGSATVKLDAVNRIQAIA 226 + S K+ R QA+A Sbjct: 180 VTSMLSKMGLQRRTQAVA 197 >gi|145596642|ref|YP_001160939.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305979|gb|ABP56561.1| response regulator receiver [Salinispora tropica CNB-440] Length = 235 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +TERE L L G G ++ EIA++L LS TV Y+ KL A +R+ + A G Sbjct: 154 GITEREREVLTLVGRGLSNSEIADELRLSHATVKTYITRLLSKLGARDRVHLVIAAYEAG 213 >gi|58584166|ref|YP_203182.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58428760|gb|AAW77797.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 301 Score = 39.3 bits (90), Expect = 0.40, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 227 RDLTPQQFRVLQMLGAGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 283 >gi|239942603|ref|ZP_04694540.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989062|ref|ZP_04709726.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291446065|ref|ZP_06585455.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349012|gb|EFE75916.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 219 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 31/59 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NLTE+E L L G+G T+ I E+L L+ T+ Y+ S KL R QA A R Sbjct: 156 NLTEQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVARL 214 >gi|254425219|ref|ZP_05038937.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] gi|196192708|gb|EDX87672.1| Sigma-70, region 4 family [Synechococcus sp. PCC 7335] Length = 220 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L DG +++ IA+ L +S +TV ++ + KLD +R +A++ I+ G Sbjct: 158 LTTREVQVLNQLADGLSNKAIAQVLTISENTVKFHISAILAKLDVSSRTEAVSVGIKAGL 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|83593935|ref|YP_427687.1| two component LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576849|gb|ABC23400.1| two component transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 226 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT R+ L L G ++ EI +LGL++ TV ++ LDA NR QA+ A Sbjct: 165 DLTRRQREVLALMSQGLSNLEIGNRLGLNLSTVKTHVTGILKALDAGNRTQAVLMA 220 >gi|88854587|ref|ZP_01129254.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88816395|gb|EAR26250.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 538 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L G ++ EIA L LS HTV+ ++ + KLD +R A + AI+ G Sbjct: 477 QLSARELEVLRLVSQGLSNPEIAASLVLSEHTVHRHVANILTKLDQTSRTGAASYAIQAG 536 Query: 233 YI 234 + Sbjct: 537 LL 538 >gi|298244409|ref|ZP_06968215.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551890|gb|EFH85755.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 220 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L T+ EI E+L LS TV ++ + KL R QAI +A G Sbjct: 158 ELTEREQEILALIAQHLTNSEITERLVLSPKTVRNHVSNIFSKLQVATRAQAIIRAREAG 217 Query: 233 Y 233 + Sbjct: 218 W 218 >gi|294632015|ref|ZP_06710575.1| two-component system response regulator [Streptomyces sp. e14] gi|292835348|gb|EFF93697.1| two-component system response regulator [Streptomyces sp. e14] Length = 219 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 156 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 215 Query: 232 GYI 234 G I Sbjct: 216 GII 218 >gi|284032594|ref|YP_003382525.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811887|gb|ADB33726.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 212 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L+L G T+++IA++L LS TV ++ + KL NR + + AI G Sbjct: 147 QLTERETEVLRLVARGLTAKQIAQRLVLSHRTVENHVQNTLRKLQLHNRAELVRYAIENG 206 >gi|320333040|ref|YP_004169751.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754329|gb|ADV66086.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 220 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE + L G ++++IA++LG+S TV +L + KL A NR +A+ +A Sbjct: 159 LTAREQAILGALSAGASNKQIAQRLGISDGTVKTHLSNLFFKLGAANRTEAVYRA 213 >gi|284050884|ref|ZP_06381094.1| two-component LuxR family transcriptional regulator [Arthrospira platensis str. Paraca] Length = 215 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 33/52 (63%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++LT RE L+L G GY++ EIA++L +S TV ++ S +L+ +R Q Sbjct: 151 QDLTPRELEVLRLIGKGYSNREIAQELFISERTVKNHVSSILSRLNLRDRTQ 202 >gi|284990521|ref|YP_003409075.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063766|gb|ADB74704.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 232 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + L G ++E+IA +L LS TV ++ A KL A +R Q + A + G Sbjct: 164 LTEREREMVALVAHGLSNEDIAARLHLSPLTVKTHVNRAMSKLRARDRAQLVVLAYQTGL 223 Query: 234 I 234 + Sbjct: 224 V 224 >gi|221635975|ref|YP_002523851.1| two-component response regulator [Thermomicrobium roseum DSM 5159] gi|221157551|gb|ACM06669.1| two-component response regulator [Thermomicrobium roseum DSM 5159] Length = 213 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ + S L+L G ++ EIA++L LS +TV Y+ +L A NR++A+ A G+ Sbjct: 152 LSPHQLSVLRLIAQGLSNREIADRLFLSENTVKGYVQEVLRRLGARNRLEAVMIANERGW 211 Query: 234 I 234 + Sbjct: 212 L 212 >gi|254381629|ref|ZP_04996993.1| luxR family two-component response regulator [Streptomyces sp. Mg1] gi|194340538|gb|EDX21504.1| luxR family two-component response regulator [Streptomyces sp. Mg1] Length = 234 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 32/51 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+ERE S L+L G+G T+ +IA++L LS TV ++ KL R+QA Sbjct: 165 LSERERSVLELIGEGLTNAQIAKRLYLSEKTVKNHISRLLDKLGVERRVQA 215 >gi|170780573|ref|YP_001708905.1| LuxR family transcriptional regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155141|emb|CAQ00241.1| putative LuxR-family transcriptional regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 540 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 37/60 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE + DG T +IA +L +S +TV +++ +A KLDA +R +A+ +A G+ Sbjct: 474 LTDRERIIVACLADGLTVTQIAGRLFISPNTVKSHIRTAYRKLDARSRSEAVERARALGH 533 >gi|115360652|ref|YP_777789.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285980|gb|ABI91455.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 237 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LT+RE L+ DG T+ EI+ + +SV+TVN ++ +A KL+ N Sbjct: 176 LTDREVEVLKWVADGKTAAEISMIMLISVYTVNFHVKNAVTKLNTSN 222 >gi|50841778|ref|YP_055005.1| putative two component response regulator [Propionibacterium acnes KPA171202] gi|289424613|ref|ZP_06426396.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289428869|ref|ZP_06430549.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295129857|ref|YP_003580520.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|50839380|gb|AAT82047.1| putative two component response regulator [Propionibacterium acnes KPA171202] gi|289155310|gb|EFD03992.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289157870|gb|EFD06093.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291377028|gb|ADE00883.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|313765254|gb|EFS36618.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313772831|gb|EFS38797.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313793147|gb|EFS41214.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313802765|gb|EFS43983.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313810971|gb|EFS48685.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313814529|gb|EFS52243.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313815274|gb|EFS52988.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313817452|gb|EFS55166.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313821963|gb|EFS59677.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313824141|gb|EFS61855.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313826508|gb|EFS64222.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313828689|gb|EFS66403.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313831737|gb|EFS69451.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313840427|gb|EFS78141.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314916093|gb|EFS79924.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314917014|gb|EFS80845.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314921290|gb|EFS85121.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926624|gb|EFS90455.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314931048|gb|EFS94879.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314954999|gb|EFS99405.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314959039|gb|EFT03141.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961312|gb|EFT05413.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314969658|gb|EFT13756.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314974723|gb|EFT18818.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977081|gb|EFT21176.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314980344|gb|EFT24438.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314985519|gb|EFT29611.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314987345|gb|EFT31436.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314989114|gb|EFT33205.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315078425|gb|EFT50456.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082108|gb|EFT54084.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315082749|gb|EFT54725.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315086107|gb|EFT58083.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315087692|gb|EFT59668.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315097354|gb|EFT69330.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315099459|gb|EFT71435.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315102036|gb|EFT74012.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315106352|gb|EFT78328.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] gi|315110138|gb|EFT82114.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327331360|gb|EGE73099.1| two-component system response regulator [Propionibacterium acnes HL096PA2] gi|327333346|gb|EGE75066.1| two-component system response regulator [Propionibacterium acnes HL096PA3] gi|327334866|gb|EGE76577.1| two-component system response regulator [Propionibacterium acnes HL097PA1] gi|327445636|gb|EGE92290.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327447259|gb|EGE93913.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327449709|gb|EGE96363.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327454559|gb|EGF01214.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456630|gb|EGF03285.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|327457093|gb|EGF03748.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|328755614|gb|EGF69230.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328756694|gb|EGF70310.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328758376|gb|EGF71992.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328761883|gb|EGF75393.1| two-component system response regulator [Propionibacterium acnes HL099PA1] gi|332674696|gb|AEE71512.1| putative two component response regulator [Propionibacterium acnes 266] Length = 218 Score = 39.3 bits (90), Expect = 0.41, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE +G T++ IA +L +S TV A+L + KLD +R++ R GY Sbjct: 156 LTDREREVAIAVAEGLTNDAIAARLNVSASTVKAHLSTIQTKLDVDSRVRIAVLVERAGY 215 Query: 234 IC 235 + Sbjct: 216 LA 217 >gi|307266633|ref|ZP_07548163.1| transcriptional regulator, LuxR family [Thermoanaerobacter wiegelii Rt8.B1] gi|306918364|gb|EFN48608.1| transcriptional regulator, LuxR family [Thermoanaerobacter wiegelii Rt8.B1] Length = 260 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L +++ L L GY IAE L + V TV + KL+A N +A+AKAI+ G Sbjct: 196 KLNDKQMKILTLEAKGYKELAIAEALRIEVVTVKYHKRKIVEKLEAKNIQEAVAKAIKLG 255 Query: 233 YI 234 I Sbjct: 256 LI 257 >gi|295835904|ref|ZP_06822837.1| two-component system response regulator [Streptomyces sp. SPB74] gi|333023773|ref|ZP_08451837.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|295825771|gb|EFG64471.1| two-component system response regulator [Streptomyces sp. SPB74] gi|332743625|gb|EGJ74066.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 219 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 156 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 215 Query: 232 GYI 234 G I Sbjct: 216 GII 218 >gi|291438340|ref|ZP_06577730.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291341235|gb|EFE68191.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 202 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 32/62 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L +G + +IA LSV TV YL + KL A NR+ A+ A G+ Sbjct: 141 LTEREVEVLARVAEGADTTQIAATTSLSVGTVRNYLTTIVNKLGARNRVDALRIARDNGW 200 Query: 234 IC 235 + Sbjct: 201 LA 202 >gi|302552868|ref|ZP_07305210.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470486|gb|EFL33579.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 268 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ EIA +L +S HTV ++G+ KL +RIQA+ A G Sbjct: 155 LTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETGL 214 Query: 234 IC 235 + Sbjct: 215 VA 216 >gi|239983037|ref|ZP_04705561.1| two-component system response regulator [Streptomyces albus J1074] gi|291454869|ref|ZP_06594259.1| two-component system response regulator [Streptomyces albus J1074] gi|291357818|gb|EFE84720.1| two-component system response regulator [Streptomyces albus J1074] Length = 220 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 157 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 216 Query: 232 GYI 234 G I Sbjct: 217 GII 219 >gi|190576052|ref|YP_001973897.1| putative LuxR family two-component response regulator [Stenotrophomonas maltophilia K279a] gi|190013974|emb|CAQ47614.1| putative LuxR family two-component response regulator [Stenotrophomonas maltophilia K279a] Length = 212 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE + L+L GY+++EIA L L+ TV Y+ + KL +R +A+ KAI I Sbjct: 154 EREVAILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 212 >gi|159185575|ref|NP_357562.2| two component response regulator [Agrobacterium tumefaciens str. C58] gi|159140709|gb|AAK90347.2| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 747 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE LQL G ++++IA+ L +S TV +LG+ KLD R +AI A + Sbjct: 687 LSQREAQMLQLLASGMSNKKIAQTLNISEVTVKFHLGNLFRKLDCNRRSEAIRAAKALDW 746 Query: 234 I 234 + Sbjct: 747 L 747 >gi|70725661|ref|YP_252575.1| hypothetical protein SH0660 [Staphylococcus haemolyticus JCSC1435] gi|123748665|sp|Q4L8Q6|NREC_STAHJ RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|68446385|dbj|BAE03969.1| nreC [Staphylococcus haemolyticus JCSC1435] Length = 217 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L L GY +++IAEKL +SV TV A+ KLD ++ + + A++ Sbjct: 155 LSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLDLKSKPELVEYALK 211 >gi|314964560|gb|EFT08660.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] Length = 218 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE +G T++ IA +L +S TV A+L + KLD +R++ R GY Sbjct: 156 LTDREREVAIAVAEGLTNDAIAARLNVSASTVKAHLSTIQTKLDVDSRVRIAVLVERAGY 215 Query: 234 IC 235 + Sbjct: 216 LA 217 >gi|291447895|ref|ZP_06587285.1| large transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291350842|gb|EFE77746.1| large transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 933 Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R S + L+ RE QLA G T+ EIA L LS TV ++ A K A++R Sbjct: 872 RPSHSDQLSPREAEVAQLASSGLTNREIAATLHLSPRTVEQHIAGAMRKTGALSR 926 >gi|239944429|ref|ZP_04696366.1| large transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239990886|ref|ZP_04711550.1| large transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 936 Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 29/55 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R S + L+ RE QLA G T+ EIA L LS TV ++ A K A++R Sbjct: 875 RPSHSDQLSPREAEVAQLASSGLTNREIAATLHLSPRTVEQHIAGAMRKTGALSR 929 >gi|239930001|ref|ZP_04686954.1| two component transcriptional regulator, LuxR family protein [Streptomyces ghanaensis ATCC 14672] Length = 209 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 32/62 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L +G + +IA LSV TV YL + KL A NR+ A+ A G+ Sbjct: 148 LTEREVEVLARVAEGADTTQIAATTSLSVGTVRNYLTTIVNKLGARNRVDALRIARDNGW 207 Query: 234 IC 235 + Sbjct: 208 LA 209 >gi|258653548|ref|YP_003202704.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556773|gb|ACV79715.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 223 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + L G +++EIA +L LS T ++ A KL A +R Q + A R G Sbjct: 160 LTEREREIVGLVAQGLSNDEIAARLYLSPLTAKTHVNRAMTKLGARDRAQLVVLAYRAGL 219 Query: 234 I 234 + Sbjct: 220 V 220 >gi|209547799|ref|YP_002279716.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533555|gb|ACI53490.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 215 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 3/62 (4%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +++ L + G+G +++IA +LG+S T+ A++ + +KLD +R QA+ I+ G Sbjct: 151 TLTPQQSRVLTMLGEGLLNKQIAYELGVSEATIKAHVSAILLKLDVDSRTQAV---IQLG 207 Query: 233 YI 234 I Sbjct: 208 KI 209 >gi|85860164|ref|YP_462366.1| two-component response regulator [Syntrophus aciditrophicus SB] gi|85723255|gb|ABC78198.1| two-component response regulator [Syntrophus aciditrophicus SB] Length = 215 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK-AI 229 A +LT RE LQL +G T++EIA L +SV TV + + KL+ +NR + K AI Sbjct: 150 APSLTAREREMLQLMAEGMTAKEIAAHLFVSVKTVETHRRNIAQKLN-INRAAELIKYAI 208 Query: 230 RFGYIC 235 R G + Sbjct: 209 REGLVT 214 >gi|294815678|ref|ZP_06774321.1| Two-component regulator [Streptomyces clavuligerus ATCC 27064] gi|326444025|ref|ZP_08218759.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294328277|gb|EFG09920.1| Two-component regulator [Streptomyces clavuligerus ATCC 27064] Length = 221 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 158 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 217 Query: 232 GYI 234 G I Sbjct: 218 GII 220 >gi|291299270|ref|YP_003510548.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568490|gb|ADD41455.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 993 Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE + L+L G+T++++ +L +S TV+ +L KL +R +A++ A G Sbjct: 931 LTDRELAVLKLVAVGHTNKQVGAELFISDKTVSVHLSRVMAKLGVTSRTEAVSAAYTAGL 990 Query: 234 I 234 + Sbjct: 991 L 991 >gi|260899471|ref|ZP_05907866.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] gi|308109241|gb|EFO46781.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] Length = 217 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G ++ +IA+ L +S HTV ++L S KL+ NR+QAI A R Sbjct: 158 LTRRELQVLSALCQGGSNLDIADSLFVSEHTVKSHLYSIFRKLEVKNRMQAITWAKR 214 >gi|260221013|emb|CBA29154.1| hypothetical protein Csp_A10720 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 75 Score = 39.3 bits (90), Expect = 0.42, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+R+ L+ DG +++EI L +S TV ++ + D NR QA+ A R GY Sbjct: 10 LTQRQELVLRELLDGRSNKEIGTTLNVSEETVKTHVAAILRHFDVQNRTQAVVAAARSGY 69 >gi|302522529|ref|ZP_07274871.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302431424|gb|EFL03240.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 219 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 156 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 215 Query: 232 GYI 234 G I Sbjct: 216 GII 218 >gi|239940608|ref|ZP_04692545.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239987090|ref|ZP_04707754.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 233 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 168 APQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 227 Query: 231 FG 232 G Sbjct: 228 RG 229 >gi|258516415|ref|YP_003192637.1| two component transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257780120|gb|ACV64014.1| two component transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 223 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + NL++RE L+L +++ EIA L +S+ TV ++ + KL NR QAI +I Sbjct: 155 SCENLSKREMEILKLMSQNHSNTEIAGMLYISLPTVKTHVSNILRKLGQQNRAQAILYSI 214 Query: 230 RFGYI 234 G I Sbjct: 215 ATGLI 219 >gi|229096760|ref|ZP_04227730.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228686602|gb|EEL40510.1| DNA-binding response regulator [Bacillus cereus Rock3-29] Length = 211 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A+++G Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYG 209 >gi|229115740|ref|ZP_04245143.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228667725|gb|EEL23164.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 211 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A+++G Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYG 209 >gi|288574154|ref|ZP_06392511.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569895|gb|EFC91452.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 214 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 31/62 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L +G T+ E+AE+L LS+ TV + KL N + AIR G Sbjct: 150 LTPREKEILMLLAEGNTNREVAERLHLSIKTVGTHRQHIMNKLKLKNLADLVKYAIRNGM 209 Query: 234 IC 235 I Sbjct: 210 IS 211 >gi|223935142|ref|ZP_03627060.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896026|gb|EEF62469.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 225 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 28/45 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 NLTERE LQL +G +++IA +LG+S+ TV + KL+ Sbjct: 155 NLTEREAEVLQLIAEGQANKQIASELGISIKTVEKHRQQVMNKLN 199 >gi|182439176|ref|YP_001826895.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779828|ref|ZP_08239093.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178467692|dbj|BAG22212.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660161|gb|EGE45007.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 234 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 169 APQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 228 Query: 231 FG 232 G Sbjct: 229 RG 230 >gi|251799449|ref|YP_003014180.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547075|gb|ACT04094.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 220 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + LTERE L L G G ++EIA L L+ TV ++ + KL +R QA A+R Sbjct: 159 KQLTEREKEVLALLGQGLNNKEIAGSLFLTEGTVKNHVSNVIAKLGLRDRTQAAIYAVR 217 >gi|119025073|ref|YP_908918.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118764657|dbj|BAF38836.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 243 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 31/53 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L++RET+ + G T+ ++ E LGLS +TV Y A KL A R QAIA Sbjct: 180 LSDRETAIIVRYARGQTTLQVGECLGLSENTVKTYTKRAMAKLGAKTRGQAIA 232 >gi|51892061|ref|YP_074752.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855750|dbj|BAD39908.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 218 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ RE L+LA G T +EIA KL ++ TV ++ KL NR +A+ AIR Sbjct: 149 QQLSPREIEVLRLASTGLTYKEIAAKLYVAESTVKNHMRHILEKLHLRNRSEAVGYAIRT 208 Query: 232 G 232 G Sbjct: 209 G 209 >gi|55823331|ref|YP_141772.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|116628130|ref|YP_820749.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|55739316|gb|AAV62957.1| response regulator (homolog to RR03 Spn) [Streptococcus thermophilus CNRZ1066] gi|116101407|gb|ABJ66553.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] gi|312278734|gb|ADQ63391.1| Two-component response transcriptional regulator (CheY-like receiver and HTH DNA-binding domains), putative [Streptococcus thermophilus ND03] Length = 214 Score = 39.3 bits (90), Expect = 0.42, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 2/108 (1%) Query: 130 GYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY++ TS + N + + A + + ++ + +LT RE L L Sbjct: 103 GYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPNLHDDLTARERDILALLAK 162 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 GY ++ IA +L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 163 GYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVS 210 >gi|256377059|ref|YP_003100719.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921362|gb|ACU36873.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 207 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G + EIA +L S TV T +L NR A+A A+R G Sbjct: 146 RLTSREADVLRLIAEGLDTAEIATRLSYSERTVKNVFYGITTRLHLRNRPHAVAYALRKG 205 Query: 233 YI 234 I Sbjct: 206 MI 207 >gi|239929757|ref|ZP_04686710.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 224 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A G Sbjct: 156 RLTEREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETG 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|238059473|ref|ZP_04604182.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237881284|gb|EEP70112.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 198 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L+L G E+A L LS TV +LG K A RI+A+ A G+ Sbjct: 138 LTARETEVLRLTAAGAPVAEVAGSLRLSCGTVRNHLGRIARKTGARTRIEAVRLARESGW 197 Query: 234 I 234 I Sbjct: 198 I 198 >gi|296129573|ref|YP_003636823.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296021388|gb|ADG74624.1| transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 137 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 35/60 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +L+ RE S L +G T+ I E+LGLS TV ++L + KL +R + +A AIR Sbjct: 73 AADLSARELSVLARVAEGRTNRLIGEELGLSALTVKSHLARISRKLGTGDRAELVAIAIR 132 >gi|229102861|ref|ZP_04233555.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228680534|gb|EEL34717.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 211 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A+++G Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYG 209 >gi|196031973|ref|ZP_03099387.1| lipoprotein-releasing system ATP-binding protein LolD 1 [Bacillus cereus W] gi|195994724|gb|EDX58678.1| lipoprotein-releasing system ATP-binding protein LolD 1 [Bacillus cereus W] Length = 129 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 32/57 (56%) Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL DGY +EIA L S T++ ++ KL+ + ++A+ K I+ GYI Sbjct: 68 EKQILQLLCDGYKRKEIASMLYASERTISNHIQHVFDKLNVSSSLEAVTKGIKLGYI 124 >gi|158424917|ref|YP_001526209.1| regulatory protein [Azorhizobium caulinodans ORS 571] gi|158331806|dbj|BAF89291.1| regulatory protein [Azorhizobium caulinodans ORS 571] Length = 201 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 3/89 (3%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 K G + F S+ L +V+++A A + + LE + + R LTERE L + Sbjct: 95 KAGVLDFLSK--PLDEQVLLDAIAAAEKALEQVLERAEAQDLLGR-LTEREREVLDMVCQ 151 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 G+ S+EIA L +S T++A+ KL Sbjct: 152 GWASKEIATALNVSARTIDAHRAHIAEKL 180 >gi|150388882|ref|YP_001318931.1| regulatory protein, LuxR [Alkaliphilus metalliredigens QYMF] gi|149948744|gb|ABR47272.1| regulatory protein, LuxR [Alkaliphilus metalliredigens QYMF] Length = 258 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 8/122 (6%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK------KRSSAAR 172 A P+ + GY+ ++ + E+I Y++I ++ + K KR S+ Sbjct: 136 AIPLNVDDEIIGYLDVSTINQKITEEMITITELLPYKIIEEYKKQIKNIEKAFKRESS-- 193 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT ++ LQL YT +EI ++L +S++TV + S KL+ + +AI KA+ Sbjct: 194 KLTTKQLQILQLMIKSYTEDEIGKELHVSINTVKYHKKSIFSKLNVRSSREAIIKALHVK 253 Query: 233 YI 234 + Sbjct: 254 VV 255 >gi|328885370|emb|CCA58609.1| Response regulator containing a CheY receiver domain and an HTH DNA-binding domain [Streptomyces venezuelae ATCC 10712] Length = 237 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ EIA +L +S HTV ++G+ KL +RIQA+ A G Sbjct: 155 LTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETGL 214 Query: 234 IC 235 + Sbjct: 215 VA 216 >gi|330820172|ref|YP_004349034.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3] gi|327372167|gb|AEA63522.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3] Length = 496 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 42/87 (48%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 EA GA +R +A +L+ RET L++ G +++E A++L +S TV Sbjct: 410 EAVGALVAQGAPVARRTARRGTAGPHLSARETEVLRVISRGASNKEAAQELTMSPSTVRT 469 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KLD R A KA G I Sbjct: 470 HVENVFRKLDCSTRAAATLKASSLGLI 496 >gi|323344011|ref|ZP_08084237.1| transcriptional regulator [Prevotella oralis ATCC 33269] gi|323094740|gb|EFZ37315.1| transcriptional regulator [Prevotella oralis ATCC 33269] Length = 213 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 39/80 (48%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 Q +T+ L + + R LT ET L+ G T+ EIAEK S HTVN + + Sbjct: 127 QRMTELLLVPETREQEQVKLTRTETEVLKDIALGMTTREIAEKRFSSFHTVNTHRKNIFR 186 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL N +A A+R G + Sbjct: 187 KLGVNNVHEATKYALRAGLV 206 >gi|298245147|ref|ZP_06968953.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552628|gb|EFH86493.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 5/99 (5%) Query: 141 LANEVIIEAHGACYQVITDFLEL-FKKRSSAARN----LTERETSCLQLAGDGYTSEEIA 195 L N+ ++ +V+ F EL +K ++ L+ RE L G +++EIA Sbjct: 126 LINDDVLSKPQLASRVLRSFHELTVEKEEGTPKDSYSPLSSREVEILDYIARGNSNKEIA 185 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L +S TV ++ S KL +R A+ A+R G+I Sbjct: 186 KSLKISDQTVKNHITSILKKLSVSDRTAAVVHALRHGWI 224 >gi|291438083|ref|ZP_06577473.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340978|gb|EFE67934.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 235 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A G Sbjct: 167 RLTEREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETG 226 Query: 233 YI 234 + Sbjct: 227 LV 228 >gi|282861267|ref|ZP_06270332.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563925|gb|EFB69462.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 1044 Score = 39.3 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE +L GYT+ IAE+L +S T + ++ + KL +R +A A A RF Sbjct: 981 LTSREQEVHRLVAAGYTNRRIAEELYISPKTASVHVSNILAKLGVASRGEAAALAHRF 1038 >gi|262376171|ref|ZP_06069401.1| two component transcriptional regulator [Acinetobacter lwoffii SH145] gi|262308772|gb|EEY89905.1| two component transcriptional regulator [Acinetobacter lwoffii SH145] Length = 229 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G ++ EIAE+L +S +TV +++ KL R +A++ A G Sbjct: 168 TLTQREQEILSLVAQGLSNREIAEQLCVSRYTVESHIKHIYRKLSVSKRTKAVSTARHLG 227 Query: 233 YI 234 + Sbjct: 228 IL 229 >gi|302533992|ref|ZP_07286334.1| two-component system response regulator [Streptomyces sp. C] gi|302442887|gb|EFL14703.1| two-component system response regulator [Streptomyces sp. C] Length = 233 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 168 APQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 227 Query: 231 FG 232 G Sbjct: 228 RG 229 >gi|256390298|ref|YP_003111862.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356524|gb|ACU70021.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 919 Score = 39.3 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ + A LT RE LA G TS +IAE L LS TV+A+LG KL +R Sbjct: 849 REATDALAGLTAREREIAALASTGVTSGQIAETLFLSRRTVDAHLGQIYRKLGVSSRAAL 908 Query: 225 I 225 I Sbjct: 909 I 909 >gi|251799214|ref|YP_003013945.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546840|gb|ACT03859.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 217 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L L GY ++E+AE L +SV TV + + KL +R + I A++ G Sbjct: 154 LSEREKEVLSLTAKGYANKEMAEMLVISVKTVETHKSNVMEKLGLKSRPELIKYAMKKGL 213 Query: 234 I 234 + Sbjct: 214 L 214 >gi|119961290|ref|YP_949663.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1] gi|119948149|gb|ABM07060.1| putative transcriptional regulator, LuxR family [Arthrobacter aurescens TC1] Length = 878 Score = 39.3 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A+ LT RE L L + E++A +L LSV+TV ++ KL A +R A+A A + Sbjct: 814 AQALTPREREVLTLLPSHLSQEQMAAELHLSVNTVKTHVRIIYSKLGAGSRHDAVAAAYK 873 Query: 231 FGYI 234 GY+ Sbjct: 874 SGYL 877 >gi|258655128|ref|YP_003204284.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558353|gb|ACV81295.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 982 Score = 39.3 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S+ LT RE L+L G T+ +I E+L +S TV+ ++ + KL R +A+A Sbjct: 909 TSSGGVLTGREEEVLRLVAAGLTNRQIGERLYISGKTVSVHISNVLGKLGVGGRAEAVAV 968 Query: 228 AIRFGYI 234 A R G + Sbjct: 969 AHRRGLL 975 >gi|256788263|ref|ZP_05526694.1| two-component system regulator [Streptomyces lividans TK24] gi|289772155|ref|ZP_06531533.1| two-component system regulator [Streptomyces lividans TK24] gi|289702354|gb|EFD69783.1| two-component system regulator [Streptomyces lividans TK24] Length = 240 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + Sbjct: 172 DPGAPRLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRY 231 Query: 228 AIRFG 232 AI G Sbjct: 232 AIERG 236 >gi|302548162|ref|ZP_07300504.1| putative transcriptional regulator, LuxR family [Streptomyces hygroscopicus ATCC 53653] gi|302465780|gb|EFL28873.1| putative transcriptional regulator, LuxR family [Streptomyces himastatinicus ATCC 53653] Length = 936 Score = 39.3 bits (90), Expect = 0.43, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 2/57 (3%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R AA LT E + + LAG G T++EIA +LG++ V +L A KLD R Q Sbjct: 868 RPEAA--LTRTERTVVSLAGGGLTNQEIAGRLGVTSRAVEKHLTHAYRKLDISGRRQ 922 >gi|254448074|ref|ZP_05061537.1| response regulator, NarL-family [gamma proteobacterium HTCC5015] gi|198262200|gb|EDY86482.1| response regulator, NarL-family [gamma proteobacterium HTCC5015] Length = 213 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L GYT ++ E LG+S +T Y+ KL +R +A +A R G Sbjct: 148 LTQREHDVLALIAKGYTVKKAGELLGISRNTCAGYVKDIYRKLQISSRAEATVEASRLGL 207 Query: 234 I 234 + Sbjct: 208 L 208 >gi|254385060|ref|ZP_05000394.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194343939|gb|EDX24905.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 224 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|111221195|ref|YP_711989.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111148727|emb|CAJ60403.1| Putative two-component system response regulator [Frankia alni ACN14a] Length = 213 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LT RE L+L +G + EIA KL +S +TV ++ + KL +R++A+ A+R Sbjct: 147 APHLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVR 206 Query: 231 FG 232 G Sbjct: 207 QG 208 >gi|90420801|ref|ZP_01228707.1| two-component response regulator, LuxR family [Aurantimonas manganoxydans SI85-9A1] gi|90335092|gb|EAS48853.1| two-component response regulator, LuxR family [Aurantimonas manganoxydans SI85-9A1] Length = 212 Score = 39.3 bits (90), Expect = 0.43, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 4/82 (4%) Query: 129 NGYVIFTSEF--LMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARNLTERETSCLQL 184 +GYV +S+ L+ A E I+ A I + E + R++A +L+ RET L++ Sbjct: 101 SGYVTKSSDPAELVQAIEAILAGRRAMSPDIAQEIAEERVEGRATAIADLSPRETEILRM 160 Query: 185 AGDGYTSEEIAEKLGLSVHTVN 206 G TS+EIA L LSV TV Sbjct: 161 LASGMTSDEIAAGLCLSVKTVQ 182 >gi|326328660|ref|ZP_08195000.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325953621|gb|EGD45621.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 220 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Query: 153 CYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 QVI F +KR R LTERE L+ G ++ EIA +L L+ TV ++ Sbjct: 133 TRQVIAQFARAPRKRKQDPRLKQLTEREREVLENIARGSSNSEIAAELFLAEQTVKTHVS 192 Query: 211 SATVKLDAVNRIQAIAKAIRFGYIC 235 KL +R QA+ A G + Sbjct: 193 RILGKLGLRDRAQAVVFAYESGLVA 217 >gi|291300805|ref|YP_003512083.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570025|gb|ADD42990.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 219 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L +G ++ +IA ++ LSV TV ++ + KL NR+QA A R G Sbjct: 152 LTRREREVLVLIAEGMSNSDIAARMFLSVGTVKDHVSAILTKLGINNRVQAALLAERAGI 211 Query: 234 I 234 + Sbjct: 212 L 212 >gi|302547140|ref|ZP_07299482.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302464758|gb|EFL27851.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 178 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 30/53 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE+ LQL G ++EIA +LGLS TV ++ + K +R Q IA Sbjct: 121 LTSRESEVLQLVRKGMANKEIARRLGLSEKTVKFHVSNVLAKAHVASRAQLIA 173 >gi|297194849|ref|ZP_06912247.1| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152490|gb|EDY64595.2| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 159 APQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 218 Query: 231 FG 232 G Sbjct: 219 RG 220 >gi|182440789|ref|YP_001828508.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469305|dbj|BAG23825.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 224 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 11/118 (9%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY-------QVITDF--LELFKKRSSAAR--NLTER 177 +G+++ + + LA V I A G ++I +F L KR + R LT R Sbjct: 101 SGFLLKNASGVELAEAVRIVAAGEALLSPEITKRLIAEFSRLSTSTKRPTQVRIDELTHR 160 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ET L L G ++ EIA +L ++ TV ++G KL +R QA A G + Sbjct: 161 ETEVLALVAQGLSNAEIAGELVVAEQTVKTHMGRILQKLQLRDRTQAAVFAYETGLVT 218 >gi|188994767|ref|YP_001929019.1| probable DNA-binding response regulator LuxR family [Porphyromonas gingivalis ATCC 33277] gi|148524521|dbj|BAF63428.1| fimR [Porphyromonas gingivalis ATCC 33277] gi|188594447|dbj|BAG33422.1| probable DNA-binding response regulator LuxR family [Porphyromonas gingivalis ATCC 33277] Length = 227 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE +Q DGY+++E AEK+ LS TV + + KL N + I A++ G Sbjct: 164 LTQREKEVVQYLCDGYSAKETAEKMHLSYRTVETHRSNILHKLGFSNAAELIRYAVKSGL 223 Query: 234 I 234 + Sbjct: 224 V 224 >gi|124022269|ref|YP_001016576.1| DNA-binding response regulator [Prochlorococcus marinus str. MIT 9303] gi|123962555|gb|ABM77311.1| possible DNA-binding response regulator [Prochlorococcus marinus str. MIT 9303] Length = 241 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 39/69 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K SS NL+ RE L+ G +++ IA++L LS+ TV +++ + KL A +R A+ Sbjct: 163 KTSSQIDNLSLREGDVLRGICKGMSNQNIADELYLSIDTVKSHVHNLLQKLPARDRTHAV 222 Query: 226 AKAIRFGYI 234 A R G + Sbjct: 223 VVAFRDGLV 231 >gi|283834143|ref|ZP_06353884.1| Two-component response regulator [Citrobacter youngae ATCC 29220] gi|291070292|gb|EFE08401.1| Two-component response regulator [Citrobacter youngae ATCC 29220] Length = 195 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + + LTERE L L GYT++EI+E +GL+ T+ A+ KL N + Sbjct: 126 SQKRLTEREQQILSLLVSGYTAKEISELVGLNYKTIQAHKMRVVTKLGLNNTSDLNKLIV 185 Query: 230 RFGY 233 RF + Sbjct: 186 RFTH 189 >gi|229494528|ref|ZP_04388291.1| DNA-binding response regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229318890|gb|EEN84748.1| DNA-binding response regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 222 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G ++++IA +L LS TV ++ + KL NR++ AI G Sbjct: 162 LTDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQG 220 >gi|226311708|ref|YP_002771602.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226094656|dbj|BAH43098.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 215 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE + G G T+ EI+E L ++ +TV +L + KL NR+Q A A+R Sbjct: 153 LTPREREIVMYVGAGKTNREISEALIIAENTVKNHLKNILEKLQLANRVQLAAYAVR 209 >gi|197105682|ref|YP_002131059.1| hypothetical protein PHZ_c2219 [Phenylobacterium zucineum HLK1] gi|196479102|gb|ACG78630.1| conserved hypothetical protein [Phenylobacterium zucineum HLK1] Length = 258 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE L+L G+ ++ +A LGLSVHTVN L A KL + +A Sbjct: 7 GLTEREKEALRLLLVGHDAKSVAGALGLSVHTVNERLREARRKLGVTSSREA 58 >gi|170760443|ref|YP_001786768.1| LuxR family DNA-binding response regulator [Clostridium botulinum A3 str. Loch Maree] gi|169407432|gb|ACA55843.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A3 str. Loch Maree] Length = 217 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 20/115 (17%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--------VITDFL-------ELFKKRS 168 L F +GY++ S +NE+I E AC + V + + EL Sbjct: 96 LKFGASGYLLKDS-----SNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKELNDDDI 150 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + NLTERE + ++ +G +++EIAEK+ LS T+ + + KLD +R Q Sbjct: 151 NLKYNLTEREINIIRQIANGLSNKEIAEKIYLSEGTIKNNISTILSKLDLRDRTQ 205 >gi|46198465|ref|YP_004132.1| two-component response regulator [Thermus thermophilus HB27] gi|46196087|gb|AAS80505.1| probable two-component response regulator [Thermus thermophilus HB27] Length = 198 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE + + L GYT ++AE+LGLSV T + Y A KL ++ + + A G Sbjct: 138 LSERERAVVALLAQGYTLSQVAERLGLSVKTASTYKQRALNKLGLMDTPELVRWAREHG 196 >gi|84516508|ref|ZP_01003867.1| two-component response regulator [Loktanella vestfoldensis SKA53] gi|84509544|gb|EAQ06002.1| two-component response regulator [Loktanella vestfoldensis SKA53] Length = 130 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 23/77 (29%), Positives = 42/77 (54%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 +I+D LE+ LT+RE L+ +G + + A ++GL + TV++Y + K Sbjct: 49 IISDLLEIKYPTHDPDEKLTKREIELLERISEGLSYAKCANEMGLQLSTVHSYSRALFRK 108 Query: 216 LDAVNRIQAIAKAIRFG 232 L ++ QA+ +A +FG Sbjct: 109 LGINSKSQAVLEAQKFG 125 >gi|319789390|ref|YP_004151023.1| transcriptional regulator, LuxR family [Thermovibrio ammonificans HB-1] gi|317113892|gb|ADU96382.1| transcriptional regulator, LuxR family [Thermovibrio ammonificans HB-1] Length = 193 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S +L++RE L L +G T++EIA +LG+S TV Y+ K + NR+ + Sbjct: 121 KGSLKIDSLSDRELKVLSLLVEGKTNKEIARELGISEQTVKYYINQLLKKANCSNRVNLV 180 Query: 226 A 226 + Sbjct: 181 S 181 >gi|301053804|ref|YP_003792015.1| response regulator [Bacillus anthracis CI] gi|300375973|gb|ADK04877.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 209 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K+ + LT+RE LQ G +++EIA +L ++ TV ++ + KL+ +R QA Sbjct: 141 KKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAA 200 Query: 226 AKAIRFG 232 A++ G Sbjct: 201 LYAVKHG 207 >gi|323528300|ref|YP_004230452.1| LuxR family two component transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385302|gb|ADX57392.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001] Length = 220 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 46/108 (42%), Gaps = 6/108 (5%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-----AARNLTERETSCLQL 184 GYV S +L V A A Y + D + R++ R L+ RE L+L Sbjct: 104 GYVTKASAPDVLVEAVRTIARRASY-LSPDISQALALRNAFSEGPPGRQLSAREFEVLRL 162 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 GYT IAEKLGLS TV + K A N +Q A R G Sbjct: 163 LVQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGADNGVQLAQMASRLG 210 >gi|302531478|ref|ZP_07283820.1| two component system response regulator [Streptomyces sp. AA4] gi|302440373|gb|EFL12189.1| two component system response regulator [Streptomyces sp. AA4] Length = 225 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 34/68 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +SA R +TERE L L G +++EIA L +S T ++ K+ A +R Q + Sbjct: 151 TSAVREVTEREREVLALVAGGLSNDEIAAHLVISAATARTHVSRIMTKIGARDRAQLVVL 210 Query: 228 AIRFGYIC 235 A G + Sbjct: 211 AYESGLVT 218 >gi|297197553|ref|ZP_06914950.1| luxR family two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197715575|gb|EDY59609.1| luxR family two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 233 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +L+ RE L L GDG T+ EI +KL LS TV ++ KL R+QA Sbjct: 164 SLSPRERDILALIGDGLTNREIGKKLYLSEKTVKNHISRLLAKLGVQRRVQA 215 >gi|84497370|ref|ZP_00996192.1| putative two component response regulator [Janibacter sp. HTCC2649] gi|84382258|gb|EAP98140.1| putative two component response regulator [Janibacter sp. HTCC2649] Length = 245 Score = 39.3 bits (90), Expect = 0.44, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE+ + L G ++ EIAE+ LS+++V +Y+ SA +D +R +A+ I G Sbjct: 158 LTPRESEIIALVTAGLSNLEIAERTYLSINSVKSYIRSAYRTMDVTSRSKAVLWGIDHG 216 >gi|300859067|ref|YP_003784050.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300686521|gb|ADK29443.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302331322|gb|ADL21516.1| Two component transcriptional regulator, LuxR family and REC superfamily [Corynebacterium pseudotuberculosis 1002] Length = 208 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%) Query: 126 FHKNGYVIFTSEF----LMLAN---EVIIEAHGACYQ----VITDFLELFKKR------S 168 F+ + YV T E+ +L + E+++EA + Y+ + + L L R S Sbjct: 81 FNDDAYVDTTLEYGARGYLLKDAGPELLVEAIRSAYRGDVLISPEVLSLLLDRRSKPNTS 140 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S+ LT RE +L G T++EIA +L +S+ TV ++ +LD NR++ A Sbjct: 141 SSDLPLTCRELEVARLIAYGRTNQEIATELFISLSTVKTHVARIQERLDVRNRVEIAAAL 200 Query: 229 IRFG 232 R G Sbjct: 201 WRSG 204 >gi|296268635|ref|YP_003651267.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091422|gb|ADG87374.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 212 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +LT+RE L+L GY +EIA++L +SV TV ++ S KL NR Sbjct: 151 SLTQREREVLRLIARGYAYKEIAKELFISVKTVETHVSSVLRKLQLSNR 199 >gi|170781371|ref|YP_001709703.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155939|emb|CAQ01071.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 249 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L +G + EIAE+L L TV ++ +KL +R+QA+ A G Sbjct: 183 TLTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAVVFAYERG 242 Query: 233 YIC 235 + Sbjct: 243 IVV 245 >gi|149007477|ref|ZP_01831120.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147761049|gb|EDK68018.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] Length = 199 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 41/73 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L+ G +++EIA++L LS T+ Y+ + KLDA NR Sbjct: 127 ELMEMVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNR 186 Query: 222 IQAIAKAIRFGYI 234 +A A G++ Sbjct: 187 TEAANIAKESGWL 199 >gi|332701939|ref|ZP_08422027.1| transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] gi|332552088|gb|EGJ49132.1| transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] Length = 215 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K S+ L+ RE L L G +++E+ +KL +S+ TV +L + KL NRIQA Sbjct: 146 KAASAGKEMLSAREREVLLLIAQGLSNDEVGDKLCISLSTVKKHLCNIYAKLKISNRIQA 205 Query: 225 IAKAIR 230 A++ Sbjct: 206 AFWAVQ 211 >gi|322516397|ref|ZP_08069322.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322125130|gb|EFX96523.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 214 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%) Query: 130 GYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY++ TS + N + + A + + ++ +LT RE L L Sbjct: 103 GYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPDLHDDLTARERDILALLAK 162 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 GY ++ IA +L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 163 GYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVS 210 >gi|313884941|ref|ZP_07818693.1| putative oxygen regulatory protein NreC [Eremococcus coleocola ACS-139-V-Col8] gi|312619632|gb|EFR31069.1| putative oxygen regulatory protein NreC [Eremococcus coleocola ACS-139-V-Col8] Length = 211 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L L GY+++EIA++L +++ TV ++ + KL+ +R QA Sbjct: 148 ELTRREYEVLLLIAKGYSNQEIADELFITLKTVKTHVSNILAKLEVSDRTQA 199 >gi|256379005|ref|YP_003102665.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255923308|gb|ACU38819.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 218 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 31/53 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R L+ER+ L G G ++ +IA +L LS TV +Y+ VK+D NR QA Sbjct: 152 RALSERDLEVLTRLGRGLSNADIARELFLSEATVKSYVSRMLVKIDCRNRTQA 204 >gi|224539069|ref|ZP_03679608.1| hypothetical protein BACCELL_03969 [Bacteroides cellulosilyticus DSM 14838] gi|224519314|gb|EEF88419.1| hypothetical protein BACCELL_03969 [Bacteroides cellulosilyticus DSM 14838] Length = 250 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA--IAKAIRF 231 L++RE LQL G S++IA+ L +S++TVN + + KL N I+A IAK + Sbjct: 190 LSDREKEILQLINKGKMSKDIAQTLSISINTVNRHRQNILEKLQVNNSIEACRIAKELHL 249 >gi|148271583|ref|YP_001221144.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829513|emb|CAN00426.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 245 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L +G + EIAE+L L TV ++ +KL +R+QA+ A G Sbjct: 179 TLTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAVVFAYERG 238 Query: 233 YIC 235 + Sbjct: 239 IVV 241 >gi|119484778|ref|ZP_01619260.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119457596|gb|EAW38720.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 215 Score = 39.3 bits (90), Expect = 0.45, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 4/60 (6%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L L +G ++ +I EKL LS T+ Y+ S K ++ NR A+ +RF Sbjct: 153 SLTEREQQVLDLLTEGRSNVKIGEKLHLSPRTIEKYVSSLLRKTESNNR----AELVRFA 208 >gi|307327036|ref|ZP_07606226.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887334|gb|EFN18330.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 229 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE + L G ++ EIA +L LS TV ++G KL+ +R+Q + A G Sbjct: 158 RLTDREREVVLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLELRDRVQVVVMAYETG 217 Query: 233 YI 234 + Sbjct: 218 LV 219 >gi|290956584|ref|YP_003487766.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260646110|emb|CBG69203.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 198 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 135 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 194 Query: 232 GYI 234 G I Sbjct: 195 GII 197 >gi|254466822|ref|ZP_05080233.1| transcriptional regulator, LuxR family, putative [Rhodobacterales bacterium Y4I] gi|206687730|gb|EDZ48212.1| transcriptional regulator, LuxR family, putative [Rhodobacterales bacterium Y4I] Length = 242 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L GY + IA +LG++ TV L SA KL A R +A+A A+R G Sbjct: 180 LSSREKQMLALLAAGYLNTRIAHELGIAEVTVRKTLLSARRKLGAKTREEALAIAVRSGL 239 Query: 234 I 234 + Sbjct: 240 L 240 >gi|167755537|ref|ZP_02427664.1| hypothetical protein CLORAM_01051 [Clostridium ramosum DSM 1402] gi|237734285|ref|ZP_04564766.1| response regulator [Mollicutes bacterium D7] gi|167704476|gb|EDS19055.1| hypothetical protein CLORAM_01051 [Clostridium ramosum DSM 1402] gi|229382515|gb|EEO32606.1| response regulator [Coprobacillus sp. D7] Length = 224 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 R L + E +Q G G +++EIA+KL LS TV YL S KL+ +R Q A++ Sbjct: 154 VRELNKPEWKVIQQVGFGLSNKEIAQKLFLSEGTVRNYLSSILSKLELRDRTQLAIWAVQ 213 Query: 231 FG 232 G Sbjct: 214 TG 215 >gi|124383175|ref|YP_001025881.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|254194028|ref|ZP_04900460.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei S13] gi|254200975|ref|ZP_04907340.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254359059|ref|ZP_04975331.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|147748587|gb|EDK55662.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|148028246|gb|EDK86206.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|169650779|gb|EDS83472.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei S13] gi|261827167|gb|ABM99233.2| DNA-binding response regulator [Burkholderia mallei NCTC 10229] Length = 264 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 32/66 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S LT RE L+L DG + EIA L +S TV+ + KL A N I Sbjct: 191 ASPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHW 250 Query: 228 AIRFGY 233 A R+GY Sbjct: 251 AYRYGY 256 >gi|56479349|ref|YP_160938.1| LuxR family DNA-binding response regulator [Aromatoleum aromaticum EbN1] gi|56315392|emb|CAI10037.1| DNA-binding response regulator, LuxR family [Aromatoleum aromaticum EbN1] Length = 215 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 1/77 (1%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 V L+ K SA R +T RE LQL +GYTS IA++L L+ TV + + K Sbjct: 134 VTNALLDNAPKDISAPR-ITARERQVLQLIAEGYTSTRIADRLHLAPSTVEVHRRNIMRK 192 Query: 216 LDAVNRIQAIAKAIRFG 232 LD + + AIR G Sbjct: 193 LDLHSVAELTKYAIRSG 209 >gi|271967438|ref|YP_003341634.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510613|gb|ACZ88891.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 221 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LT+RE L G+G ++ +IA +L LS T+ +Y+ VKL NR QA Sbjct: 153 DLTDREVEVLTCLGEGLSNAKIARRLYLSEATIKSYVSRMLVKLGFSNRTQA 204 >gi|269836276|ref|YP_003318504.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785539|gb|ACZ37682.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 223 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L +++EIA +L +S HTV +L + KL +R QA A A+ G Sbjct: 155 LSPREVEVLELVALRLSNKEIAARLSISEHTVKNHLKNILAKLQLSSRRQAAAYAVAHGL 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|291298006|ref|YP_003509284.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567226|gb|ADD40191.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 323 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L G + IA +LG+S T+ ++G L + R QA A+A R G Sbjct: 262 ELSKREREILTLMASGAGDDAIARRLGVSRRTIVRHIGRLLEHLGSTTRFQAGAQAARRG 321 Query: 233 YI 234 ++ Sbjct: 322 WL 323 >gi|169827260|ref|YP_001697418.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168991748|gb|ACA39288.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 204 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G ++EIA++L +++ TV ++ + KL+ +R QA+ A + G Sbjct: 143 LTDREMEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNG 201 >gi|167034704|ref|YP_001669935.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166861192|gb|ABY99599.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 82 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 31/65 (47%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT RE L G +S EI L TVN ++ + K D R+ A+ K Sbjct: 13 ADAPVRLTPRERQVLLWCAYGKSSWEIGRILDCKESTVNFHVSNILRKFDVPTRVVAVIK 72 Query: 228 AIRFG 232 AIR+G Sbjct: 73 AIRYG 77 >gi|254245083|ref|ZP_04938405.1| hypothetical protein PA2G_05969 [Pseudomonas aeruginosa 2192] gi|126198461|gb|EAZ62524.1| hypothetical protein PA2G_05969 [Pseudomonas aeruginosa 2192] Length = 130 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L RE CL G T ++ A LG+S TV + A KL+A R +A+A+R G Sbjct: 22 LAAREVQCLLAVAGGCTDKQAALSLGVSPRTVKGAIERAMHKLNAYRRPALVAEAMRRGL 81 Query: 234 I 234 I Sbjct: 82 I 82 >gi|30262277|ref|NP_844654.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527561|ref|YP_018910.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185120|ref|YP_028372.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49479552|ref|YP_036377.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143191|ref|YP_083638.1| response regulator [Bacillus cereus E33L] gi|65319569|ref|ZP_00392528.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|165870591|ref|ZP_02215245.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0488] gi|167632733|ref|ZP_02391059.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0442] gi|167639661|ref|ZP_02397931.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0193] gi|170687057|ref|ZP_02878276.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0465] gi|170706750|ref|ZP_02897209.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0389] gi|177649611|ref|ZP_02932613.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0174] gi|190565731|ref|ZP_03018651.1| DNA-binding response regulator, LuxR family [Bacillus anthracis Tsiankovskii-I] gi|196033705|ref|ZP_03101116.1| DNA-binding response regulator, LuxR family [Bacillus cereus W] gi|196039895|ref|ZP_03107198.1| DNA-binding response regulator, LuxR family [Bacillus cereus NVH0597-99] gi|196046921|ref|ZP_03114142.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB108] gi|218903406|ref|YP_002451240.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820] gi|225864244|ref|YP_002749622.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB102] gi|227814920|ref|YP_002814929.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. CDC 684] gi|228914867|ref|ZP_04078473.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927331|ref|ZP_04090391.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933571|ref|ZP_04096421.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945885|ref|ZP_04108228.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121819|ref|ZP_04251039.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|229184493|ref|ZP_04311697.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|229600887|ref|YP_002866616.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0248] gi|254684846|ref|ZP_05148706.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722254|ref|ZP_05184042.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737292|ref|ZP_05194996.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743522|ref|ZP_05201207.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751608|ref|ZP_05203645.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760128|ref|ZP_05212152.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30256908|gb|AAP26140.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. Ames] gi|47502709|gb|AAT31385.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. 'Ames Ancestor'] gi|49179047|gb|AAT54423.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. Sterne] gi|49331108|gb|AAT61754.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51976660|gb|AAU18210.1| response regulator [Bacillus cereus E33L] gi|164713746|gb|EDR19269.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0488] gi|167512370|gb|EDR87746.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0193] gi|167531545|gb|EDR94210.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0442] gi|170128481|gb|EDS97349.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0389] gi|170669108|gb|EDT19852.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0465] gi|172084685|gb|EDT69743.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0174] gi|190563758|gb|EDV17723.1| DNA-binding response regulator, LuxR family [Bacillus anthracis Tsiankovskii-I] gi|195993385|gb|EDX57342.1| DNA-binding response regulator, LuxR family [Bacillus cereus W] gi|196022296|gb|EDX60982.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB108] gi|196029154|gb|EDX67758.1| DNA-binding response regulator, LuxR family [Bacillus cereus NVH0597-99] gi|218535372|gb|ACK87770.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820] gi|225790573|gb|ACO30790.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB102] gi|227003571|gb|ACP13314.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. CDC 684] gi|228598993|gb|EEK56609.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228661608|gb|EEL17228.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228813759|gb|EEM60037.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826031|gb|EEM71814.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832343|gb|EEM77920.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844783|gb|EEM89828.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265295|gb|ACQ46932.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0248] Length = 209 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K+ + LT+RE LQ G +++EIA +L ++ TV ++ + KL+ +R QA Sbjct: 141 KKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAA 200 Query: 226 AKAIRFG 232 A++ G Sbjct: 201 LYAVKHG 207 >gi|322373351|ref|ZP_08047887.1| DNA-binding response regulator VraR [Streptococcus sp. C150] gi|321278393|gb|EFX55462.1| DNA-binding response regulator VraR [Streptococcus sp. C150] Length = 214 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%) Query: 130 GYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY++ TS + N + + A + + ++ +LT RE L L Sbjct: 103 GYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPDLHDDLTARERDILALLAK 162 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 GY ++ IA +L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 163 GYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVS 210 >gi|302327479|gb|ADL26680.1| transcriptional regulator, LuxR family [Fibrobacter succinogenes subsp. succinogenes S85] Length = 450 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + + LT R+ L L G T+ EI LG+S +TV +L + L+ NRI+A++ Sbjct: 5 NTKQELTPRQKEILSLLRKGLTNAEICRTLGISANTVKVHLANIYKILEVTNRIEAVS 62 >gi|271962958|ref|YP_003337154.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506133|gb|ACZ84411.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 234 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 5/83 (6%) Query: 153 CYQVITDFLELFKKRSS-----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++IT+F + +K + LT+RE L+L G + EIA++L +S +TV Sbjct: 145 AAKLITEFANMSRKEAERPPQLPVPRLTDREMEVLRLVAKGMNNREIAKQLFISENTVKN 204 Query: 208 YLGSATVKLDAVNRIQAIAKAIR 230 ++ + KL +R++A+ A+R Sbjct: 205 HVRNILDKLQLHSRMEAVVYAVR 227 >gi|226304567|ref|YP_002764525.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183682|dbj|BAH31786.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 222 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G ++++IA +L LS TV ++ + KL NR++ AI G Sbjct: 162 LTDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQG 220 >gi|225352800|ref|ZP_03743823.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156407|gb|EEG69976.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 248 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 34/53 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ Sbjct: 187 DLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAV 239 >gi|224024514|ref|ZP_03642880.1| hypothetical protein BACCOPRO_01239 [Bacteroides coprophilus DSM 18228] gi|224017736|gb|EEF75748.1| hypothetical protein BACCOPRO_01239 [Bacteroides coprophilus DSM 18228] Length = 262 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 3/88 (3%) Query: 139 LMLANEVIIEAHGACYQV--ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 L L N ++ E C V +T + +K A LTERE L+L G S+ IAE Sbjct: 166 LCLYNPLLTEFPEGCVVVHAVTGQVRRLEK-CHAGSILTEREKQVLRLIDQGMMSKTIAE 224 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +L +SV+TV+ + KL N I+A Sbjct: 225 QLSISVNTVSRHRQEILKKLRVSNSIEA 252 >gi|167586004|ref|ZP_02378392.1| two component transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 281 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R SA R L+ R+ ++ G T++ IA LG+S TV +L S +L A NR A+A Sbjct: 151 RRSATRVLSPRQAQIMRFVHMGNTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAVA 210 >gi|157150612|ref|YP_001449919.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075406|gb|ABV10089.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 214 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A Sbjct: 148 DLTARERDILGLLAKGYENQRIADELYISLKTVKTHVSNILSKLEVSDRTQAVVYA 203 >gi|311745433|ref|ZP_07719218.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1] gi|126577983|gb|EAZ82203.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1] Length = 208 Score = 39.3 bits (90), Expect = 0.46, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 10/99 (10%) Query: 136 SEFLMLANEVIIEAHGACYQVI------TDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 E + +EV H A +Q + + F + F+++ +R RE ++L DG Sbjct: 109 DELVYTIHEVYDGRHIANFQRVIQQANQSSFYDAFREKFKLSR----REVQIIKLIKDGM 164 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 ++EIA+ L LSV T+ + + KL +RI+ + K Sbjct: 165 QNKEIADDLSLSVQTIETHRKNIHSKLHVSSRIELVNKV 203 >gi|313835533|gb|EFS73247.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928592|gb|EFS92423.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314970359|gb|EFT14457.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|314982460|gb|EFT26553.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315090549|gb|EFT62525.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315094064|gb|EFT66040.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|328908207|gb|EGG27966.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 206 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+LA G + IA +L LSV TV ++ SA K A NR +A A + G+ Sbjct: 146 LSEREREILRLAESGASISLIASQLYLSVGTVRNHVSSAIGKTGAANRTEAAVTARQRGW 205 Query: 234 I 234 + Sbjct: 206 L 206 >gi|228477324|ref|ZP_04061962.1| DNA-binding response regulator [Streptococcus salivarius SK126] gi|228251343|gb|EEK10514.1| DNA-binding response regulator [Streptococcus salivarius SK126] Length = 214 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%) Query: 130 GYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 GY++ TS + N + + A + + ++ +LT RE L L Sbjct: 103 GYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPDLHDDLTARERDILALLAK 162 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 GY ++ IA +L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 163 GYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVS 210 >gi|85711562|ref|ZP_01042620.1| two-component system regulatory protein [Idiomarina baltica OS145] gi|85694714|gb|EAQ32654.1| two-component system regulatory protein [Idiomarina baltica OS145] Length = 212 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT++E + L+L G +++EIA+ L S T+ + S KL +R +A+ KAI G Sbjct: 152 LTDKELAVLRLMAAGLSNQEIADSLFKSTGTIKNQVSSIMAKLGVHDRTRAVLKAIDLGV 211 Query: 234 I 234 + Sbjct: 212 L 212 >gi|302529868|ref|ZP_07282210.1| two-component system response regulator [Streptomyces sp. AA4] gi|302438763|gb|EFL10579.1| two-component system response regulator [Streptomyces sp. AA4] Length = 221 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ERE + +G ++ E+AE+L +SV TV A+ + KL VNR+Q IA +R Sbjct: 164 ERERDTARAIAEGLSNAEVAERLHISVATVKAHTSNLFAKLGVVNRVQ-IALVVR 217 >gi|254510783|ref|ZP_05122850.1| transcriptional regulator, LuxR family protein [Rhodobacteraceae bacterium KLH11] gi|221534494|gb|EEE37482.1| transcriptional regulator, LuxR family protein [Rhodobacteraceae bacterium KLH11] Length = 416 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L+L G +++ IA KLG++ HTV ++ + + K+ NR A Sbjct: 185 LTRREKQVLRLVSQGKSNKTIAAKLGITEHTVKLHMHNVSGKIGVSNRTAA 235 >gi|86741724|ref|YP_482124.1| LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86568586|gb|ABD12395.1| transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 950 Score = 39.3 bits (90), Expect = 0.47, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 34/58 (58%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + S +LT +ET +L DG TS+E+A +L +S TV+A+L + KL +R Q Sbjct: 880 RTSGNTDDLTAQETHIARLVADGATSKEVAARLFISPRTVDAHLRNIFRKLGITSRRQ 937 >gi|94314237|ref|YP_587446.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358089|gb|ABF12177.1| two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 247 Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust. Identities = 20/46 (43%), Positives = 27/46 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LT RE +QLA G +++IA+ LG+S TV Y G A K+ A Sbjct: 181 TLTGREQEVMQLAARGLMNKQIADDLGISEATVKIYRGHAMRKMQA 226 >gi|318061060|ref|ZP_07979781.1| two-component response regulator [Streptomyces sp. SA3_actG] Length = 198 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L +G +++ I +GLS TV ++L KL +R +A A+R Sbjct: 135 RELSGREVEVLRLVAEGQSNKAIGVSMGLSALTVKSHLARIARKLGTGDRAGMVAVALRT 194 Query: 232 GYI 234 G I Sbjct: 195 GII 197 >gi|311894105|dbj|BAJ26513.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 918 Score = 39.3 bits (90), Expect = 0.48, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + A LT+ E C LA G ++ +IA L +SV TV A L KLD +R+Q +A Sbjct: 852 QDGARARLTDAEQRCAHLAAAGASNRDIAAALTVSVKTVEATLTRVYRKLDLRSRVQ-LA 910 Query: 227 KAI 229 A+ Sbjct: 911 HAV 913 >gi|312140713|ref|YP_004008049.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311890052|emb|CBH49370.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 222 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S ++T RE L+ G ++ EIA+K +S TV ++G K + +R+QA+ A Sbjct: 148 SLPEDMTPREIEVLEAMAHGLSNSEIAQKFVVSEATVKTHVGRVLSKTGSRDRVQAVVYA 207 Query: 229 IRFGYI 234 + G + Sbjct: 208 FQVGLV 213 >gi|307327309|ref|ZP_07606496.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886988|gb|EFN17987.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 212 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 35/70 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R LT+RET L DG T+ EI +L ++ TV +L KLD +R +A Sbjct: 140 RMRRPVQEPLTDRETEVLGAVADGLTNAEIGRRLVIAEATVKTHLLRLFAKLDVNDRTRA 199 Query: 225 IAKAIRFGYI 234 + A+ G + Sbjct: 200 VVVAMERGLL 209 >gi|223940647|ref|ZP_03632489.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223890693|gb|EEF57212.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 243 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 3/76 (3%) Query: 155 QVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 Q+ +E F++++ +L+ RE L+L GY+++ IA+KL LS+ TV ++L Sbjct: 153 QIARRVIESFRRKAKNPNEYAHLSMREEQILRLLSQGYSNKLIADKLELSIDTVCSHLKR 212 Query: 212 ATVKLDAVNRIQAIAK 227 KL +R +A+ + Sbjct: 213 VFEKLHVSSRTEAVVR 228 >gi|205372669|ref|ZP_03225480.1| hypothetical protein Bcoam_04270 [Bacillus coahuilensis m4-4] Length = 223 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G G + EIAE L ++ TV ++ + KL+ +R QA A+R G Sbjct: 158 LTEREWGVLSELGKGLNNREIAEALYITEGTVKNHVSNIISKLEVRDRTQAAIYAVRHG 216 >gi|16265098|ref|NP_437890.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|307309480|ref|ZP_07589136.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307320609|ref|ZP_07600023.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15141237|emb|CAC49750.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|306893759|gb|EFN24531.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306900065|gb|EFN30685.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 219 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 30/58 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +S+ LT RE L L G ++++IA KL L TV ++ KLD NR +A Sbjct: 147 KSNLVAELTRREQEVLHLVASGMSNKQIARKLDLHEKTVKHHMTQIMAKLDVANRTEA 204 >gi|309792037|ref|ZP_07686513.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308225930|gb|EFO79682.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 234 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Query: 141 LANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 L N+ ++ +V+ F EL ++ S LT RE L G +++EIA Sbjct: 121 LINDSVLAKPNVATRVLHQFRELAATEDEQTSVLFAPLTSREIEILDCIARGLSNKEIAN 180 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S TV ++ S KL +R A+ AI+ G++ Sbjct: 181 ELSISGQTVKNHITSILSKLQVNDRTMAVIYAIKRGWV 218 >gi|300789929|ref|YP_003770220.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299799443|gb|ADJ49818.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 200 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L+L +G+ +EEIA KL S TV L + NR A+A A+R G Sbjct: 139 GLAARECDVLRLVAEGFGTEEIAAKLCYSERTVKNVLYGLMTRCGLNNRAHAVAYALRAG 198 Query: 233 YI 234 I Sbjct: 199 AI 200 >gi|296270057|ref|YP_003652689.1| LuxR family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092844|gb|ADG88796.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 288 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 35/68 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + L+ RE L L G + E A +LG+ TV +YL +A KL +R++ + Sbjct: 220 RPARPNPLSPRELDVLALVAVGCGNAEAARRLGIGPETVKSYLRNAMRKLGTHSRMETVV 279 Query: 227 KAIRFGYI 234 A R G++ Sbjct: 280 AARRAGFL 287 >gi|227503679|ref|ZP_03933728.1| two-component system response regulator [Corynebacterium accolens ATCC 49725] gi|227075715|gb|EEI13678.1| two-component system response regulator [Corynebacterium accolens ATCC 49725] Length = 205 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +L G TS E+A K+ LS +V + S K DA NR +A KA G+ Sbjct: 145 LTPREREIARLLLSGVTSSELARKVHLSPGSVRNVVSSIMTKTDANNRYEAATKAQTQGW 204 Query: 234 I 234 I Sbjct: 205 I 205 >gi|302036829|ref|YP_003797151.1| putative LuxR family response regulator [Candidatus Nitrospira defluvii] gi|190343243|gb|ACE75631.1| putative two component transcriptional regulator [Candidatus Nitrospira defluvii] gi|300604893|emb|CBK41226.1| putative Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 249 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 39/64 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + +LT+RE + L G+G ++++IA +L + TV +L S KLD +R Q + +A + Sbjct: 165 SEDLTKRERDIITLIGEGLSNKDIACRLSICSTTVRHHLTSIFGKLDVHSRQQLLIRAHK 224 Query: 231 FGYI 234 +G + Sbjct: 225 YGLV 228 >gi|91794405|ref|YP_564056.1| response regulator receiver [Shewanella denitrificans OS217] gi|91716407|gb|ABE56333.1| two component transcriptional regulator, LuxR family [Shewanella denitrificans OS217] Length = 219 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 3/109 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLA 185 NG+++ L N + + A G V+ + + L+ERETS L+ Sbjct: 111 NGFLLKDVSLDKLLNAIEVIAQGGVLIEPVVLNQLSQQAPINAPEVNPLSERETSILKFM 170 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++EIA + L+ TV ++ + KL +R +A+ K + G I Sbjct: 171 ANGCSNKEIATGVFLAEGTVKNHVSNILSKLGCRDRTRAVLKGLELGII 219 >gi|308178463|ref|YP_003917869.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307745926|emb|CBT76898.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 221 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 19/123 (15%) Query: 129 NGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARN------------- 173 +G+++ +E +LA V + +G +T L+L ++ + AA++ Sbjct: 100 SGFLLKNAEPELLATAVHQVAAGNGLLSPEVT--LKLIQRNTGAAQSTPSAAATAEAQLL 157 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L G ++EIA LGLS TV +L + KL +R+Q + A R Sbjct: 158 EALTERERQVLGELATGKNNQEIAAVLGLSEATVKTHLSNLLAKLHLRDRVQGVLFAHRA 217 Query: 232 GYI 234 G I Sbjct: 218 GLI 220 >gi|284029937|ref|YP_003379868.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809230|gb|ADB31069.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 219 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 4/84 (4%) Query: 155 QVITDFLELFKKRSSAA----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 QV LE + R S LT+RE L G G ++ EIA +L +SV TV ++ Sbjct: 134 QVTVRLLEQLRHRRSGPLPDKAALTDREREITMLVGRGLSNAEIATELFISVGTVKTHVA 193 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL A +R+ A A + G + Sbjct: 194 NIQRKLSARSRVGIAAWAWQTGQL 217 >gi|218438401|ref|YP_002376730.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218171129|gb|ACK69862.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 249 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G + +IAEKL ++V TV ++ + KL +R QA +A+R G Sbjct: 188 LTDRELDVLELIVAGCNNAQIAEKLYITVGTVKTHVRNILNKLCVNDRTQAAVRALRSGL 247 Query: 234 I 234 + Sbjct: 248 V 248 >gi|223934493|ref|ZP_03626414.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896956|gb|EEF63396.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 212 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE L L G+ ++EIA+K+ +SV TV +L KL +R +AI K ++ Sbjct: 156 LTDREKEILDLLTQGFANKEIADKMQISVTTVRTHLRHIYEKLHIRSRSEAIVKYLK 212 >gi|184201100|ref|YP_001855307.1| putative two-component response regulator [Kocuria rhizophila DC2201] gi|183581330|dbj|BAG29801.1| putative two-component response regulator [Kocuria rhizophila DC2201] Length = 217 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L G+T++EIA LS+++V +Y+ SA K+ R QA+ ++ G Sbjct: 146 LSAREAEVIALITQGFTNDEIARNCYLSINSVKSYIRSAYRKMGVERRSQAVLWGVQHG 204 >gi|154494182|ref|ZP_02033502.1| hypothetical protein PARMER_03529 [Parabacteroides merdae ATCC 43184] gi|154086044|gb|EDN85089.1| hypothetical protein PARMER_03529 [Parabacteroides merdae ATCC 43184] Length = 192 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 32/49 (65%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 S + L+ RET LQL G T++EIA+KL +S++TV ++ + T KL Sbjct: 119 SDNNKELSTRETDVLQLIVKGSTNKEIADKLNISLNTVLSHRKNITTKL 167 >gi|15903856|ref|NP_359406.1| DNA-binding response regulator [Streptococcus pneumoniae R6] gi|116516134|ref|YP_817220.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|168495059|ref|ZP_02719202.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|221232724|ref|YP_002511878.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|15459500|gb|AAL00617.1| Response regulator [Streptococcus pneumoniae R6] gi|116076710|gb|ABJ54430.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|183575076|gb|EDT95604.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|220675186|emb|CAR69771.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|332071979|gb|EGI82467.1| response regulator [Streptococcus pneumoniae GA17545] Length = 199 Score = 39.3 bits (90), Expect = 0.48, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 41/73 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L+ G +++EIA++L LS T+ Y+ + KLDA NR Sbjct: 127 ELMEMVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNR 186 Query: 222 IQAIAKAIRFGYI 234 +A A G++ Sbjct: 187 TEAANIAKESGWL 199 >gi|319795110|ref|YP_004156750.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597573|gb|ADU38639.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 155 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE LQL G ++ IAE L S +T++ + S KLD +R +A+ A+ G Sbjct: 86 SLSPRELQVLQLVSQGLSNRRIAEALSRSANTIDTQIKSIYRKLDVNSRTRAVRAAMEQG 145 Query: 233 YIC 235 + Sbjct: 146 LLS 148 >gi|302036419|ref|YP_003796741.1| hypothetical protein NIDE1055 [Candidatus Nitrospira defluvii] gi|300604483|emb|CBK40815.1| protein of unknown function, putative Response regulator [Candidatus Nitrospira defluvii] Length = 118 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT RE L+L DG+T+ IAE+L +S+ T + + + KL A N Q + A+ Sbjct: 42 DLTPRELEILRLIWDGHTNRSIAEQLNISMKTADTHRSNMMKKLRACNTAQLLKAAL 98 >gi|290958411|ref|YP_003489593.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260647937|emb|CBG71042.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A G Sbjct: 156 RLTEREREVMILVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETG 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|163839801|ref|YP_001624206.1| LuxR family two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162953277|gb|ABY22792.1| two-component response regulator, LuxR family [Renibacterium salmoninarum ATCC 33209] Length = 67 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 33/64 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++LT RE L GY++ EIA L LS TV ++G KL A +R+Q + A Sbjct: 2 QSLTAREHELFLLIAQGYSNPEIASNLFLSEATVKTHVGHILSKLGARDRVQIVVIAYET 61 Query: 232 GYIC 235 G + Sbjct: 62 GAVT 65 >gi|170719977|ref|YP_001747665.1| LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169757980|gb|ACA71296.1| transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 236 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 42/82 (51%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 C+ + E + S+ +++RE L+ + G T+ ++A L LS TVN ++ S Sbjct: 153 CHTLHDTICEHHLAKLSSPLKMSDRELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSV 212 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 K +A N+ A+A A+ G I Sbjct: 213 ITKTNASNKAGAVAIAMMRGLI 234 >gi|186474125|ref|YP_001861467.1| LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196457|gb|ACC74421.1| transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 361 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE ++L G + +IA +LGLS TV ++ + KL+ +R QAI A + G+ Sbjct: 297 LTRREREIVELIAGGRDNAQIAARLGLSEKTVRNHITNIFAKLEVESRAQAIVLARKAGF 356 >gi|148657524|ref|YP_001277729.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148569634|gb|ABQ91779.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 223 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE L+ G +++EIA L ++ TV ++ + KLD +R QA+ KA Sbjct: 159 LTERELDVLKALARGMSNKEIAAALVITEGTVKTHISNILAKLDVRDRTQAVLKA 213 >gi|29832624|ref|NP_827258.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609744|dbj|BAC73793.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 215 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 150 APQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 209 Query: 231 FG 232 G Sbjct: 210 RG 211 >gi|298242057|ref|ZP_06965864.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555111|gb|EFH88975.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 219 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 3/76 (3%) Query: 162 ELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 EL RS A L+ERE L+L G ++ EIA +L +S TV +L + KL Sbjct: 141 ELRGTRSEAPNPFVELSERELEVLRLIAGGLSNTEIAARLTISEKTVKGHLSNILSKLHL 200 Query: 219 VNRIQAIAKAIRFGYI 234 ++R QA A + G I Sbjct: 201 MDRTQAAVFAWQQGLI 216 >gi|271963970|ref|YP_003338166.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507145|gb|ACZ85423.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 218 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 45/99 (45%), Gaps = 14/99 (14%) Query: 137 EFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN----LTERETSCLQLA 185 EFL+ V A G Y +VI + R SAAR LT RE L L Sbjct: 110 EFLL---AVRAAAEGGAYLSPRVAARVIGELAGDRLARGSAARERIDVLTRREREVLGLV 166 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G G ++ EIA +L L +V Y+ + +L NR+QA Sbjct: 167 GAGLSNAEIARRLHLVEGSVKTYVSTILGRLGVRNRVQA 205 >gi|238027839|ref|YP_002912070.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1] gi|237877033|gb|ACR29366.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 250 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 7/117 (5%) Query: 99 ESSGQLSVRLEGGLLPF-AGIAFPVRLGFHKNGYVIFT-SEFLMLANEVIIEAHGACYQV 156 ++ GQL++R F A + P L G V++ S E + A +++ Sbjct: 106 QTDGQLALRTHDAAHGFGAKLIVPAHLPTLNLGGVLYVGSGAPAREAEPALHAKRMLFRL 165 Query: 157 IT-DFLELFKK--RSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 I + L+ + R AAR+L TERET L+L GYT+ IA++L ++V TV Y Sbjct: 166 IANELLDWHARQIRRDAARSLALTERETGILRLLRSGYTAHNIAKELSVAVPTVYGY 222 >gi|256380392|ref|YP_003104052.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924695|gb|ACU40206.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 225 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE + LA G +++ IAE L LS T ++ A KL+ +R Q + A R G Sbjct: 158 LTDREREVVVLAAHGLSNDRIAEHLHLSPLTAKTHVNRAMSKLNTRDRAQLVVLAYRTGL 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|218263259|ref|ZP_03477435.1| hypothetical protein PRABACTJOHN_03119 [Parabacteroides johnsonii DSM 18315] gi|218222833|gb|EEC95483.1| hypothetical protein PRABACTJOHN_03119 [Parabacteroides johnsonii DSM 18315] Length = 192 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 32/49 (65%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 S + L+ RET LQL G T++EIA+KL +S++TV ++ + T KL Sbjct: 119 SENNKELSTRETDVLQLIVKGSTNKEIADKLNISLNTVLSHRKNITTKL 167 >gi|110835379|ref|YP_694238.1| transcription regulator [Alcanivorax borkumensis SK2] gi|110648490|emb|CAL17966.1| transcription regulator, putative [Alcanivorax borkumensis SK2] Length = 203 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 4/79 (5%) Query: 160 FLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 F E F+ + AA LT ++ + L + +G+ ++EIA +L +SV+T+ +L K Sbjct: 125 FSESFRLMAGAAPEEALTLTRQQLAILTMLQEGHGNKEIARQLFVSVNTIKTHLRLLYEK 184 Query: 216 LDAVNRIQAIAKAIRFGYI 234 LD NR I KA + G + Sbjct: 185 LDVPNRTACIEKARQIGLL 203 >gi|119714205|ref|YP_919347.1| response regulator receiver [Nocardioides sp. JS614] gi|119526114|gb|ABL79484.1| response regulator receiver [Nocardioides sp. JS614] Length = 216 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +L G ++ EI E+L +S HT ++ S KL R+QA+ A G Sbjct: 152 LTNREREVWELVARGLSNAEITERLVISEHTTKTHVASILQKLHVRGRVQAVVLAYESGL 211 Query: 234 I 234 + Sbjct: 212 V 212 >gi|219667253|ref|YP_002457688.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537513|gb|ACL19252.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 217 Score = 39.3 bits (90), Expect = 0.49, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 37/70 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S + L+ERE L+ G+T+++IA+ L +SV TV Y KL+ R + Sbjct: 148 EKESKKLKQLSERELEVLRNLALGHTNQDIADLLHVSVKTVETYKARVMEKLEMHKRAEL 207 Query: 225 IAKAIRFGYI 234 + A+ G I Sbjct: 208 VRYAMENGII 217 >gi|308187897|ref|YP_003932028.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1] gi|308058407|gb|ADO10579.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1] Length = 215 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL DG T++ IA KL +S TV ++ K++ +R++A A++ G Sbjct: 154 QLTRRERDILQLISDGMTNKAIARKLDISESTVKVHVKYLLKKINLKSRLEAAVWALQNG 213 >gi|294142434|ref|YP_003558412.1| LuxR family transcriptional regulator [Shewanella violacea DSS12] gi|293328903|dbj|BAJ03634.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12] Length = 221 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE + ++L G ++EIA +L +S HTV A++ S K + NR++ + A Sbjct: 156 LTNRERTIIKLVSSGARNKEIAHQLCISEHTVKAHISSIFRKTQSRNRVELLRWA 210 >gi|315505327|ref|YP_004084214.1| transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315411946|gb|ADU10063.1| transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 207 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L+L +G+ + EIA++L S TV + +L NR A+A A+R Sbjct: 144 ASGLTAREIDVLRLMAEGFDTNEIADELRYSERTVKNVIYGLNHRLKLRNRSHAVAYALR 203 Query: 231 FGYI 234 G I Sbjct: 204 SGMI 207 >gi|226973308|gb|ACO94455.1| LuxR-type transcriptional regulator [Streptomyces sp. DSM 21069] Length = 951 Score = 39.3 bits (90), Expect = 0.50, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 31/60 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+E E LA GY + EIAE+L ++V TV +L K+ NR Q + +A Y Sbjct: 889 LSESERRVATLAAQGYANREIAERLFITVSTVEQHLTRVYRKMGIRNREQLLQRAHAVSY 948 >gi|188993657|ref|YP_001905667.1| Two-component system response regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|167735417|emb|CAP53632.1| Two-component system response regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 274 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA LG+S T+ A++ + KL NR QA+ A Sbjct: 200 RDLTPQQFRVLQMLGVGRLNKQIAYDLGVSEATIKAHVTAILRKLGVTNRTQAVLMA 256 >gi|22536505|ref|NP_687356.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|76788056|ref|YP_329044.1| LuxR family transcriptional regulator [Streptococcus agalactiae A909] gi|76797803|ref|ZP_00780068.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21] gi|77405005|ref|ZP_00782106.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77410572|ref|ZP_00786932.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|22533337|gb|AAM99228.1|AE014206_8 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|76563113|gb|ABA45697.1| DNA-binding response regulator, LuxR family [Streptococcus agalactiae A909] gi|76586817|gb|EAO63310.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21] gi|77163287|gb|EAO74238.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77176444|gb|EAO79212.1| DNA-binding response regulator [Streptococcus agalactiae H36B] Length = 213 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ TS + N + + G A + ++ K + LT RE L L Sbjct: 101 KGYMLKTSSAAEILNAIRKVSRGEQAIENEVDKKIKAHDKCPALHEGLTARERDILNLLA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A Sbjct: 161 KGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYA 202 >gi|312889097|ref|ZP_07748656.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311298407|gb|EFQ75517.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 225 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 N++ RE L+L YT+EEIA KL +SV TVN + + +K + N + AI+ Sbjct: 161 NISAREEEILRLTCQQYTAEEIANKLFISVKTVNGHRNNLLIKTGSRNVTGLVIYAIK 218 >gi|269217550|ref|ZP_06161404.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] gi|269212485|gb|EEZ78825.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] Length = 202 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+ DG T+ +++ L LS TV YL SA K A R +A+ A G+ Sbjct: 142 LTEREQDVLRATSDGGTTADVSRSLFLSQGTVRNYLSSAIHKTGARTRAEAVVIARDNGW 201 Query: 234 I 234 + Sbjct: 202 L 202 >gi|256828839|ref|YP_003157567.1| two component LuxR family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256578015|gb|ACU89151.1| two component transcriptional regulator, LuxR family [Desulfomicrobium baculatum DSM 4028] Length = 215 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Query: 156 VITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++ D+L + ++R + +NLT RE ++ DG+ S+EIAE L +S+ TV+ + + Sbjct: 135 IVRDYLLVNRQRKALPPMKNLTAREKEIVRHIIDGWKSKEIAESLFISIKTVDKHRSNIL 194 Query: 214 VKL 216 KL Sbjct: 195 GKL 197 >gi|220907344|ref|YP_002482655.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863955|gb|ACL44294.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 209 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L +G +++EIA L +S T+ ++ KLD +R QA+ A++ G Sbjct: 146 QLTERERQVLMLMCEGKSNQEIALTLQISEGTIKFHVNGILRKLDVCDRTQAVLVALKRG 205 >gi|124268421|ref|YP_001022425.1| response regulator [Methylibium petroleiphilum PM1] gi|124261196|gb|ABM96190.1| response regulator [Methylibium petroleiphilum PM1] Length = 219 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 30/60 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G+T EI +L LS HT+ Y+ KL+ +R + +A R G Sbjct: 156 TLTERENEVLLRVAKGFTLPEIGVQLNLSRHTIADYVKQIYRKLNVSSRAEVALEAQRLG 215 >gi|322378102|ref|ZP_08052588.1| transcriptional regulatory protein DegU [Streptococcus sp. M334] gi|321280939|gb|EFX57953.1| transcriptional regulatory protein DegU [Streptococcus sp. M334] Length = 198 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G T ++I EK+ +S TV+ +L + KL +R +AI A + GY Sbjct: 135 LTSREIEMLELVRNGLTIDDICEKVYVSKRTVSNHLANIFSKLGVSSRQEAIHVAEQLGY 194 >gi|306836048|ref|ZP_07469038.1| DNA-binding response regulator [Corynebacterium accolens ATCC 49726] gi|304568075|gb|EFM43650.1| DNA-binding response regulator [Corynebacterium accolens ATCC 49726] Length = 205 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +L G TS E+A K+ LS +V + S K DA NR +A KA G+ Sbjct: 145 LTPREREIARLLLSGVTSSELARKVHLSPGSVRNVVSSIMTKTDANNRYEAATKAQTQGW 204 Query: 234 I 234 I Sbjct: 205 I 205 >gi|225175001|ref|ZP_03728998.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225169641|gb|EEG78438.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 205 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L +K LT RE L+ G +++IAE L +S HTV ++G KL+ +R Sbjct: 133 LEEKNEDKLSELTTREMEVLKFLSRGLNNKKIAEDLFISEHTVKKHVGQILTKLELQDRT 192 Query: 223 QA 224 QA Sbjct: 193 QA 194 >gi|218548547|ref|YP_002382338.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii ATCC 35469] gi|218356088|emb|CAQ88705.1| DNA-binding transcriptional activator [Escherichia fergusonii ATCC 35469] Length = 251 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + A ++RET L+ +G TS EIA L +S +TVN + + K +A N+ Q A Sbjct: 186 TPAMRFSKRETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYA 245 Query: 229 IRFGYI 234 G I Sbjct: 246 AATGII 251 >gi|182436043|ref|YP_001823762.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464559|dbj|BAG19079.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 225 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EI+ +L ++ TV ++G VKL +R QA A G Sbjct: 159 ELTERETEVLTLIAGGLSNAEISRQLIVAEQTVKTHVGRILVKLGVRDRTQAAVFAYESG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|117620400|ref|YP_858390.1| csgAB operon transcriptional regulatory protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561807|gb|ABK38755.1| probable csgAB operon transcriptional regulatory protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 219 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 9/96 (9%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAA-RN---LTERETSCLQLAGDGYTSEEIA 195 +L E I H C D + ++K RN LT RE ++ G ++ EIA Sbjct: 128 VLEGEYWIPRHLLC-----DLVNYYRKGGEHHLRNQTLLTVREQEIIRYLMTGASNTEIA 182 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L +S HT+ ++L + KL+ NR+QA++ A + Sbjct: 183 DSLFVSEHTIKSHLYNVFKKLNVKNRLQAVSWAKEY 218 >gi|92115145|ref|YP_575073.1| two component LuxR family transcriptional regulator [Chromohalobacter salexigens DSM 3043] gi|91798235|gb|ABE60374.1| two component transcriptional regulator, LuxR family [Chromohalobacter salexigens DSM 3043] Length = 211 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 34/66 (51%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S+ LT R+ L+L DG S IAE+L LSV TV A+ ++ N + +A Sbjct: 142 SSVPALTRRQQEILKLIVDGCRSRTIAEQLDLSVKTVEAHRREIMRRVGKQNSAGLVKEA 201 Query: 229 IRFGYI 234 IR G + Sbjct: 202 IRLGLV 207 >gi|89902142|ref|YP_524613.1| two component LuxR family transcriptional regulator [Rhodoferax ferrireducens T118] gi|89346879|gb|ABD71082.1| two component transcriptional regulator, LuxR family [Rhodoferax ferrireducens T118] Length = 262 Score = 39.3 bits (90), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G++ EIA GLSVHTV ++ + KL ++ +A+ +A R G Sbjct: 198 LSPREQEVLALIARGFSYTEIARLQGLSVHTVQTHIKNLYGKLSVHSKSEAVFEATRMGL 257 Query: 234 IC 235 + Sbjct: 258 LS 259 >gi|319945594|ref|ZP_08019846.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319748193|gb|EFW00435.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 199 Score = 38.9 bits (89), Expect = 0.51, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ +E + L+ G +++EIA++L LS T+ Y+ KLDA NR +A A G+ Sbjct: 139 LSSQEQAVLKEVAKGASNQEIADRLFLSNGTIRNYMSGILTKLDAENRTEAAKIAQEKGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|302548323|ref|ZP_07300665.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302465941|gb|EFL29034.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 38.9 bits (89), Expect = 0.51, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE + LA +G ++ EIAE L LS TV ++ A KL A +R Q + A + G Sbjct: 158 ELTDREREVMGLAAEGKSNTEIAEILVLSPLTVRTHIHRAMTKLGARDRAQLVVIAYQTG 217 >gi|254393044|ref|ZP_05008206.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706693|gb|EDY52505.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 221 Score = 38.9 bits (89), Expect = 0.51, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 150 APRLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 209 Query: 231 FG 232 G Sbjct: 210 RG 211 >gi|332883601|gb|EGK03882.1| hypothetical protein HMPREF9456_01423 [Dysgonomonas mossii DSM 22836] Length = 292 Score = 38.9 bits (89), Expect = 0.51, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Query: 157 ITDFLELFKK----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 I D ELF R + + L+ERE L+L G ++E+A+KL +S++TV ++ + Sbjct: 204 IEDLQELFVSGRISRDNKRQPLSERELDVLRLIALGLLNKEVADKLNISLNTVLSHRKNI 263 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 T KL I I GYI Sbjct: 264 TAKLGIKTVSGLIFYCITHGYI 285 >gi|302558223|ref|ZP_07310565.1| LuxR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] gi|302475841|gb|EFL38934.1| LuxR-family transcriptional regulator [Streptomyces griseoflavus Tu4000] Length = 1026 Score = 38.9 bits (89), Expect = 0.51, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G+T+ IAE+L +S T + ++ + KL R +A A A R G Sbjct: 952 LTSRERDVLRLVAAGHTNRRIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHRVGL 1011 Query: 234 I 234 + Sbjct: 1012 V 1012 >gi|297158223|gb|ADI07935.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 212 Score = 38.9 bits (89), Expect = 0.51, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + R LT RET L DG T+ EI ++L ++ TV +L KLD +R Sbjct: 138 IARMRRPVQDPLTARETDVLNAVADGLTNAEIGKRLVITEATVKTHLLRLFAKLDVNDRT 197 Query: 223 QAIAKAIRFGYI 234 +A+ A+ G + Sbjct: 198 RAVVVALERGLL 209 >gi|253997167|ref|YP_003049231.1| LuxR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983846|gb|ACT48704.1| transcriptional regulator, LuxR family [Methylotenera mobilis JLW8] Length = 263 Score = 38.9 bits (89), Expect = 0.51, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 32/58 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE S ++ G T++EI L +S TV ++ KLD +NR QA+ + R Sbjct: 202 LSEREISIMEWVKAGKTNQEIGIILDISSFTVKNHMQRILKKLDVLNRAQAVTQFNRM 259 >gi|256393107|ref|YP_003114671.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359333|gb|ACU72830.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 105 Score = 38.9 bits (89), Expect = 0.51, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 9/97 (9%) Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER------ETSCLQLAGDGYT 190 +F A +V++ H + DF + F S+ ++ +R E + + G G Sbjct: 4 QFGQGAGQVVVGVHRLGNE--EDFADRFGVVSAFGQDFGDRAGRGDAEEGAVGV-GTGAR 60 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 EIA +L LS TV YLG A KLDA NR+ A+ + Sbjct: 61 PLEIAGRLFLSHGTVRNYLGFAVAKLDARNRVDAVRR 97 >gi|227535294|ref|ZP_03965343.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187028|gb|EEI67095.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 202 Score = 38.9 bits (89), Expect = 0.51, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL +A N LT+RE + L G +S++IA L LS TV YL + KL N Sbjct: 128 ELVTNMVTAESNPLTDRELAVLAAVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHN 187 Query: 221 RIQAIAKAIRFGYI 234 RI+A+ A + ++ Sbjct: 188 RIEAVQMAKKNKWL 201 >gi|218695523|ref|YP_002403190.1| DNA-binding transcriptional activator SdiA [Escherichia coli 55989] gi|300904802|ref|ZP_07122630.1| autoinducer binding domain protein [Escherichia coli MS 84-1] gi|218352255|emb|CAU98011.1| DNA-binding transcriptional activator [Escherichia coli 55989] gi|300403316|gb|EFJ86854.1| autoinducer binding domain protein [Escherichia coli MS 84-1] gi|315257253|gb|EFU37221.1| autoinducer binding domain protein [Escherichia coli MS 85-1] Length = 240 Score = 38.9 bits (89), Expect = 0.51, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|156932383|ref|YP_001436299.1| hypothetical protein ESA_00159 [Cronobacter sakazakii ATCC BAA-894] gi|156530637|gb|ABU75463.1| hypothetical protein ESA_00159 [Cronobacter sakazakii ATCC BAA-894] Length = 222 Score = 38.9 bits (89), Expect = 0.51, Method: Compositional matrix adjust. Identities = 21/48 (43%), Positives = 29/48 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE L+ G ++EEIA K+G++V TV Y + +KL A NR Sbjct: 162 LTLREERILEWWSVGMSNEEIARKMGIAVKTVYTYKRNIRMKLGADNR 209 >gi|118477693|ref|YP_894844.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118416918|gb|ABK85337.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 221 Score = 38.9 bits (89), Expect = 0.51, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K+ + LT+RE LQ G +++EIA +L ++ TV ++ + KL+ +R QA Sbjct: 153 KKENPFSMLTKREQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAA 212 Query: 226 AKAIRFG 232 A++ G Sbjct: 213 LYAVKHG 219 >gi|330873485|gb|EGH07634.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 77 Score = 38.9 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + S +NLT+RE L+ + +G T+ +IA L L T++ ++ SA K+ N+ A Sbjct: 10 QPSPTKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAV 69 Query: 227 KA 228 +A Sbjct: 70 QA 71 >gi|269796804|ref|YP_003316259.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098989|gb|ACZ23425.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 881 Score = 38.9 bits (89), Expect = 0.52, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +LT RE +L G+T++EIA+ L LSV TV +L A K+ NR Sbjct: 822 DLTHREQEVARLVSQGWTNQEIADTLVLSVRTVENHLHRAYRKVGVDNR 870 >gi|168492022|ref|ZP_02716165.1| response regulator [Streptococcus pneumoniae CDC0288-04] gi|183573661|gb|EDT94189.1| response regulator [Streptococcus pneumoniae CDC0288-04] Length = 199 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 41/73 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L+ G +++EIA++L LS T+ Y+ + KLDA NR Sbjct: 127 ELMEVMMTHPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNR 186 Query: 222 IQAIAKAIRFGYI 234 +A A G++ Sbjct: 187 TEAANIAKESGWL 199 >gi|113953078|ref|YP_731830.1| DNA-binding response regulator [Synechococcus sp. CC9311] gi|113880429|gb|ABI45387.1| DNA-binding response regulator [Synechococcus sp. CC9311] Length = 237 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 N T RE S LQL +G ++EIA +L S+ V Y+ +K + +R + + A++ Sbjct: 175 NFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTETSSRTELVRYALQ 232 >gi|6716341|gb|AAF26601.1|AF110468_3 PsyR [Pseudomonas syringae pv. tabaci] Length = 246 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ELF + A L+ RET L+ G + EIAE +S TV ++ + + KL Sbjct: 176 ELFPQ--PAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLKVRTA 233 Query: 222 IQAIAKAIRFGYI 234 QA+ KAI G + Sbjct: 234 KQAVYKAINMGMV 246 >gi|83814348|ref|YP_444815.1| response regulator receiver domain-containing protein [Salinibacter ruber DSM 13855] gi|294506669|ref|YP_003570727.1| hypothetical protein SRM_00854 [Salinibacter ruber M8] gi|83755742|gb|ABC43855.1| response regulator receiver domain protein [Salinibacter ruber DSM 13855] gi|294342997|emb|CBH23775.1| Conserved hypohtetical protein containing response regulator receiver domain [Salinibacter ruber M8] Length = 217 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 17/94 (18%) Query: 133 IFTSEFLMLANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 IF SE + NE +++ A G +++ LE+ L++RE +L G G + Sbjct: 123 IFVSEEI---NERLLQSMAEGGRERIMQSPLEV----------LSDRELEVFELTGQGLS 169 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVK--LDAVNRI 222 + EIAE+L LSV TV +Y K LD+ N + Sbjct: 170 TREIAERLHLSVKTVESYRARIKNKLNLDSANEL 203 >gi|87300868|ref|ZP_01083710.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. WH 5701] gi|87284739|gb|EAQ76691.1| two component transcriptional regulator, LuxR family protein [Synechococcus sp. WH 5701] Length = 252 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 34/70 (48%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K + A + T RE S LQL +G ++EIA +L S+ V Y+ K +R + Sbjct: 182 KSATPATHSFTPREASVLQLVAEGLMNKEIARRLETSIRNVEKYVSRLFTKTGTTSRTEL 241 Query: 225 IAKAIRFGYI 234 + A+ G + Sbjct: 242 VRYALENGLV 251 >gi|327406023|ref|YP_004346861.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327321531|gb|AEA46023.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 205 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Query: 144 EVIIEAHGA----CYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKL 198 E I+E H ++ L+ F K + L ++RE L L GY +EIA+KL Sbjct: 113 EAILELHEGGSPMSPKIARKVLQSFNKAENPVLQLISKREREVLDLLSKGYLYKEIADKL 172 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +++ TV +L KL N+ +A+ K Sbjct: 173 NITLSTVKRHLNHIYEKLQVQNKTEAVNK 201 >gi|312621234|ref|YP_004022847.1| LuxR family transcriptional regulator [Caldicellulosiruptor kronotskyensis 2002] gi|312201701|gb|ADQ45028.1| transcriptional regulator, LuxR family [Caldicellulosiruptor kronotskyensis 2002] Length = 74 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 2/60 (3%) Query: 169 SAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 SA N LT+RE ++L GY+++EI+ L +S TV Y+ +KL+A +R++ A Sbjct: 4 SAVNNSELTKREKEIIKLIAKGYSNKEISSFLNISEGTVKTYIKIIMLKLNARSRVEIAA 63 >gi|302531199|ref|ZP_07283541.1| predicted protein [Streptomyces sp. AA4] gi|302440094|gb|EFL11910.1| predicted protein [Streptomyces sp. AA4] Length = 295 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 34/65 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ RE LQL +G + IA+ L LSV TV ++ S KL A +R A+ A R Sbjct: 209 AMPLSRREYQVLQLVAEGLENSGIAKLLFLSVETVRTHVKSILRKLSARDRTHAVTIAFR 268 Query: 231 FGYIC 235 G + Sbjct: 269 SGILV 273 >gi|300951540|ref|ZP_07165374.1| autoinducer binding domain protein [Escherichia coli MS 116-1] gi|300956569|ref|ZP_07168849.1| autoinducer binding domain protein [Escherichia coli MS 175-1] gi|300316616|gb|EFJ66400.1| autoinducer binding domain protein [Escherichia coli MS 175-1] gi|300449215|gb|EFK12835.1| autoinducer binding domain protein [Escherichia coli MS 116-1] gi|323940421|gb|EGB36612.1| autoinducer binding domain-containing protein [Escherichia coli E482] gi|332089650|gb|EGI94752.1| regulatory protein sdiA [Shigella boydii 5216-82] Length = 240 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|134098243|ref|YP_001103904.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004336|ref|ZP_06562309.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910866|emb|CAM00979.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 218 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L L G G ++ IA+ LG + TV ++ +KLD NR+Q Sbjct: 155 LTPRERQILSLVGGGLSNASIAKTLGATESTVKGHVSRLLMKLDCENRVQ 204 >gi|56963198|ref|YP_174929.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909441|dbj|BAD63968.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 210 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 32/58 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE + L G+G ++EIAE+LGLSV TV KL +R Q AIR Sbjct: 149 SLTPRERAILTCIGEGLNNKEIAERLGLSVGTVKNQTSHIFDKLALRDRTQLAIYAIR 206 >gi|33595652|ref|NP_883295.1| LuxR family transcriptional regulator [Bordetella parapertussis 12822] gi|33565731|emb|CAE36275.1| putative LuxR-family transcriptional regulator [Bordetella parapertussis] Length = 221 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%) Query: 156 VITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++T L+L +R +A LTERE + A G ++ +IA +LG++ TV A+L Sbjct: 126 LVTRLLKLVDERVPSAPAPWQHDRLTERENAVALRAAHGDSNADIAGELGITERTVKAHL 185 Query: 210 GSATVKLDAVNRIQ 223 +A KL +R+Q Sbjct: 186 SAAFEKLGVSDRLQ 199 >gi|47093968|ref|ZP_00231703.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|258611471|ref|ZP_05711518.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|47017667|gb|EAL08465.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|258600349|gb|EEW13674.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] Length = 171 Score = 38.9 bits (89), Expect = 0.52, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L +G +++EIA++L +++ TV ++ + KLD +R QA A + Sbjct: 107 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 166 Query: 233 YI 234 + Sbjct: 167 LV 168 >gi|311894659|dbj|BAJ27067.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 936 Score = 38.9 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT E C +LA G ++ +IA L +SV TV A L KLD +R+Q +A AI Sbjct: 848 LTSAEERCARLAAAGASNRDIAAALTVSVKTVEATLTRVYRKLDVHSRVQ-LAHAI 902 >gi|331663414|ref|ZP_08364324.1| regulatory protein SdiA [Escherichia coli TA143] gi|323977903|gb|EGB72989.1| autoinducer binding domain-containing protein [Escherichia coli TW10509] gi|331059213|gb|EGI31190.1| regulatory protein SdiA [Escherichia coli TA143] Length = 240 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|295107039|emb|CBL04582.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 490 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%) Query: 162 ELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 ELF++R +A L+ RET LQ G + I KL +S HTV +++ S KLD Sbjct: 411 ELFERRCAAVAELYQLSPRETDILQFLAKGRNAAYIQSKLTISPHTVKSHIYSIYRKLD 469 >gi|256824492|ref|YP_003148452.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687885|gb|ACV05687.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 228 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 33/74 (44%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L + A LTERE L G+G T+ +IA +L +S TV L K NR Sbjct: 153 DLASRARELAAGLTERERQVAALVGEGLTTPQIAARLFVSEATVKTQLAEVQRKWGCENR 212 Query: 222 IQAIAKAIRFGYIC 235 Q A R G I Sbjct: 213 TQVAVWADRAGLIA 226 >gi|226361838|ref|YP_002779616.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226240323|dbj|BAH50671.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 759 Score = 38.9 bits (89), Expect = 0.53, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 30/60 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LT RE L DG T+ EIA KL +S TV+A++ KL +R Q + Sbjct: 690 KESGTRAGLTRREQQIAALVADGLTNREIATKLVISQRTVDAHVEHILTKLGFRSRTQIV 749 >gi|170782617|ref|YP_001710951.1| putative two component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157187|emb|CAQ02370.1| putative two component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 232 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 5/78 (6%) Query: 162 ELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 E ++R ++A + LT RE ++L GDG +++EI +L + TV ++L KL Sbjct: 154 EFTRRRVASAVHPGVEVLTPREQDIVRLLGDGLSNDEIGGRLVIETSTVKSHLTRIMTKL 213 Query: 217 DAVNRIQAIAKAIRFGYI 234 +R+Q + R G + Sbjct: 214 GTRDRLQTVVWGYRSGLL 231 >gi|167573291|ref|ZP_02366165.1| DNA-binding response regulator [Burkholderia oklahomensis C6786] Length = 205 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 30/61 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L DG + EIA L +S TV+ + KL A N I A R+G Sbjct: 137 KLTRREKQILKLIADGMRNREIASLLNISQKTVDCHRQRLMQKLGARNVANVIHWAYRYG 196 Query: 233 Y 233 Y Sbjct: 197 Y 197 >gi|74311738|ref|YP_310157.1| DNA-binding transcriptional activator SdiA [Shigella sonnei Ss046] gi|82543616|ref|YP_407563.1| DNA-binding transcriptional activator SdiA [Shigella boydii Sb227] gi|157156210|ref|YP_001463220.1| DNA-binding transcriptional activator SdiA [Escherichia coli E24377A] gi|187730097|ref|YP_001879705.1| DNA-binding transcriptional activator SdiA [Shigella boydii CDC 3083-94] gi|193071152|ref|ZP_03052076.1| regulatory protein SdiA [Escherichia coli E110019] gi|194439563|ref|ZP_03071636.1| regulatory protein SdiA [Escherichia coli 101-1] gi|300822312|ref|ZP_07102453.1| autoinducer binding domain protein [Escherichia coli MS 119-7] gi|300917358|ref|ZP_07134027.1| autoinducer binding domain protein [Escherichia coli MS 115-1] gi|73855215|gb|AAZ87922.1| transcriptional regulator of ftsQAZ gene cluster [Shigella sonnei Ss046] gi|81245027|gb|ABB65735.1| transcriptional regulator of ftsQAZ gene cluster [Shigella boydii Sb227] gi|157078240|gb|ABV17948.1| regulatory protein SdiA [Escherichia coli E24377A] gi|187427089|gb|ACD06363.1| regulatory protein SdiA [Shigella boydii CDC 3083-94] gi|192955547|gb|EDV86026.1| regulatory protein SdiA [Escherichia coli E110019] gi|194421472|gb|EDX37486.1| regulatory protein SdiA [Escherichia coli 101-1] gi|300415404|gb|EFJ98714.1| autoinducer binding domain protein [Escherichia coli MS 115-1] gi|300525195|gb|EFK46264.1| autoinducer binding domain protein [Escherichia coli MS 119-7] gi|309702211|emb|CBJ01527.1| regulatory protein [Escherichia coli ETEC H10407] gi|320176080|gb|EFW51148.1| DNA-binding transcriptional activator SdiA [Shigella dysenteriae CDC 74-1112] gi|323165288|gb|EFZ51076.1| regulatory protein sdiA [Shigella sonnei 53G] gi|323174570|gb|EFZ60191.1| regulatory protein sdiA [Escherichia coli LT-68] gi|323937191|gb|EGB33471.1| autoinducer binding domain-containing protein [Escherichia coli E1520] gi|323972721|gb|EGB67922.1| autoinducer binding domain-containing protein [Escherichia coli TA007] gi|332343642|gb|AEE56976.1| regulatory protein SdiA [Escherichia coli UMNK88] Length = 240 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|332199316|gb|EGJ13394.1| response regulator [Streptococcus pneumoniae GA41317] Length = 199 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 41/73 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L+ G +++EIA++L LS T+ Y+ + KLDA NR Sbjct: 127 ELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNR 186 Query: 222 IQAIAKAIRFGYI 234 +A A G++ Sbjct: 187 TEAANIAKESGWL 199 >gi|325299083|ref|YP_004259000.1| transcriptional regulator, LuxR family [Bacteroides salanitronis DSM 18170] gi|324318636|gb|ADY36527.1| transcriptional regulator, LuxR family [Bacteroides salanitronis DSM 18170] Length = 251 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 5/89 (5%) Query: 139 LMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 L L ++++ G C + +EL K+ ++ R L+ RE L L G TS+ IA Sbjct: 155 LCLYGPLLLDIPGQCVIIHSASGHIVELEKQDNT--RILSARERQVLSLIDKGLTSKGIA 212 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 E L +S+HTVN + KL N I A Sbjct: 213 ETLSISIHTVNRHRQEILGKLQVGNAIAA 241 >gi|307128200|ref|YP_003880231.1| response regulator [Streptococcus pneumoniae 670-6B] gi|306485262|gb|ADM92131.1| response regulator [Streptococcus pneumoniae 670-6B] Length = 199 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 41/73 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L+ G +++EIA++L LS T+ Y+ + KLDA NR Sbjct: 127 ELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNR 186 Query: 222 IQAIAKAIRFGYI 234 +A A G++ Sbjct: 187 TEAANIAKESGWL 199 >gi|301029367|ref|ZP_07192464.1| autoinducer binding domain protein [Escherichia coli MS 196-1] gi|301645566|ref|ZP_07245495.1| autoinducer binding domain protein [Escherichia coli MS 146-1] gi|307138583|ref|ZP_07497939.1| DNA-binding transcriptional activator SdiA [Escherichia coli H736] gi|331642538|ref|ZP_08343673.1| regulatory protein SdiA [Escherichia coli H736] gi|299877793|gb|EFI86004.1| autoinducer binding domain protein [Escherichia coli MS 196-1] gi|301076098|gb|EFK90904.1| autoinducer binding domain protein [Escherichia coli MS 146-1] gi|323186308|gb|EFZ71658.1| regulatory protein sdiA [Escherichia coli 1357] gi|323948203|gb|EGB44191.1| autoinducer binding domain-containing protein [Escherichia coli H120] gi|324017952|gb|EGB87171.1| autoinducer binding domain protein [Escherichia coli MS 117-3] gi|324118970|gb|EGC12859.1| autoinducer binding domain-containing protein [Escherichia coli E1167] gi|331039336|gb|EGI11556.1| regulatory protein SdiA [Escherichia coli H736] Length = 240 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|297193099|ref|ZP_06910497.1| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151643|gb|EFH31285.1| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 11/107 (10%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR----NLTER 177 +G+++ + LA+ V + A G ++IT+F +L + AA +LTER Sbjct: 100 SGFLLKDASARQLADGVRVVAAGEALLAPTVTRRLITEFSKLSETPRPAAMTQVADLTER 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ET L L G ++ EIA L ++ T+ ++ VKL +R QA Sbjct: 160 ETEVLVLIAQGLSNAEIASHLVVAESTIKTHVSRVLVKLGLRDRTQA 206 >gi|302868292|ref|YP_003836929.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|302571151|gb|ADL47353.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] Length = 207 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L+L +G+ + EIA++L S TV + +L NR A+A A+R Sbjct: 144 ASGLTAREIDVLRLMAEGFDTNEIADELRYSERTVKNVIYGLNHRLKLRNRSHAVAYALR 203 Query: 231 FGYI 234 G I Sbjct: 204 SGMI 207 >gi|257487581|ref|ZP_05641622.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012605|gb|EGH92661.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 247 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ELF + A L+ RET L+ G + EIAE +S TV ++ + + KL Sbjct: 177 ELFPQ--PAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLKVRTA 234 Query: 222 IQAIAKAIRFGYI 234 QA+ KAI G + Sbjct: 235 KQAVYKAINMGMV 247 >gi|238059977|ref|ZP_04604686.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237881788|gb|EEP70616.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 232 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 16/121 (13%) Query: 130 GYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFKKRSSAARN------------- 173 GY++ E + + V A G V+ ++ ++ +A RN Sbjct: 100 GYLVKDGEPADMLDAVRRAARGEPLLAPSVLARVVDRARRSHAADRNGDIEQPDTAVLAA 159 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G G ++ EIA L + V TV ++ + KL NR+QA A R G Sbjct: 160 LTARERDVLSLVGVGLSNAEIARDLNVGVTTVKTHIVALLEKLGIRNRVQAGILAHRLGL 219 Query: 234 I 234 + Sbjct: 220 V 220 >gi|268317775|ref|YP_003291494.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] gi|262335309|gb|ACY49106.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] Length = 217 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 26/43 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L++RE +L G G ++ EIAE+L LSV TV +Y KL Sbjct: 153 LSDRELEVFELTGQGLSTREIAERLHLSVKTVESYRARIKAKL 195 >gi|218781259|ref|YP_002432577.1| LuxR family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218762643|gb|ACL05109.1| transcriptional regulator, LuxR family [Desulfatibacillum alkenivorans AK-01] Length = 287 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 9/113 (7%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + +PV F K G V+ T E + + + + F LT R Sbjct: 180 VVYPV---FDKQGKVVSTVEIETPPQDRASQGNAEPAEADDPVQAPF------GETLTTR 230 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E L+L +G+T+ EI++ L +S HTV +++ KL +R QA A + Sbjct: 231 EIQVLRLMAEGFTNGEISDMLEISPHTVKSHVIHVFNKLGVNDRTQAAVWAAK 283 >gi|145224163|ref|YP_001134841.1| two component LuxR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315444498|ref|YP_004077377.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] gi|145216649|gb|ABP46053.1| two component transcriptional regulator, LuxR family [Mycobacterium gilvum PYR-GCK] gi|315262801|gb|ADT99542.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] Length = 217 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 9/113 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-ACYQ------VITDFLELFKKRSSAAR--NLTERET 179 GY++ ++ L + V A G A + V+ +F + + + A LTERET Sbjct: 102 TGYLVKSASKQELGDAVRATAQGRAVFTPGLAGLVLGEFRRIEQSSPAGADGPTLTERET 161 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ G T+++IA +L LS TV ++ + KL NR++ AI G Sbjct: 162 EILRYVAKGLTAKQIASRLSLSHRTVENHVQATFRKLQVGNRVELARYAIEHG 214 >gi|158317264|ref|YP_001509772.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158112669|gb|ABW14866.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 250 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LT RE L+L +G + EIA KL +S +TV ++ + KL +R++A+ A+R Sbjct: 184 APHLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVR 243 Query: 231 FG 232 G Sbjct: 244 QG 245 >gi|116620723|ref|YP_822879.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223885|gb|ABJ82594.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 216 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 2/82 (2%) Query: 156 VITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++ D++ ++R + LT RE LQL +G ++E+A L LS++TV + G+ Sbjct: 135 LVEDYMRQMQERQIEDSYELLTTREREVLQLLAEGKNNKEVAAILNLSLYTVETHRGNIL 194 Query: 214 VKLDAVNRIQAIAKAIRFGYIC 235 KL+ + + I AIR G I Sbjct: 195 QKLNLHSGAELILYAIRKGVIS 216 >gi|330891500|gb|EGH24161.1| LuxR transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 247 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ELF + A L+ RET L+ G + EIAE +S TV ++ + + KL+ Sbjct: 177 ELFPQ--PAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTA 234 Query: 222 IQAIAKAIRFG 232 QA+ KAI G Sbjct: 235 KQAVYKAINMG 245 >gi|326330414|ref|ZP_08196722.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] gi|325951689|gb|EGD43721.1| transcriptional regulator, LuxR family protein [Nocardioidaceae bacterium Broad-1] Length = 382 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 32/56 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE+ LQL G + IAE+L ++ TV +++ KL NR QAIA+A Sbjct: 321 ELTARESEVLQLMVAGAPNRVIAERLVIAEDTVKSHVKQILRKLGVANRAQAIARA 376 >gi|324113634|gb|EGC07609.1| autoinducer binding domain-containing protein [Escherichia fergusonii B253] Length = 251 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + A ++RET L+ +G TS EIA L +S +TVN + + K +A N+ Q A Sbjct: 186 TPAMRFSKRETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYA 245 Query: 229 IRFGYI 234 G I Sbjct: 246 AATGII 251 >gi|307331025|ref|ZP_07610155.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883322|gb|EFN14378.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 249 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 AR RE L+L +GY + A KLGLSV T Y+ L +R QA +A+R Sbjct: 183 ARGRVLREV--LKLMAEGYKDDAAARKLGLSVRTYRRYVADIMRDLQVESRFQAGVRAVR 240 Query: 231 FGYI 234 G + Sbjct: 241 AGLM 244 >gi|282861721|ref|ZP_06270785.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563537|gb|EFB69075.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 229 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 167 RSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 RS AR L T RET L+L G +++EIA +L ++ TV ++ K D +R Q Sbjct: 152 RSGPARRLKGLTPRETEVLELVARGLSNQEIAGRLVVAEQTVKTHVSRILAKADLRDRAQ 211 Query: 224 AIAKAIRFGYI 234 A+ A G + Sbjct: 212 AVIFAYESGLV 222 >gi|271962774|ref|YP_003336970.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505949|gb|ACZ84227.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 212 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +LT+RE L+L GY +EIA++L +SV TV ++ S KL NR Sbjct: 151 SLTQREREVLRLIARGYAYKEIAKELFISVKTVETHVSSVLRKLQLSNR 199 >gi|294812171|ref|ZP_06770814.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] gi|326440673|ref|ZP_08215407.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324770|gb|EFG06413.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] Length = 234 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 163 APRLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 222 Query: 231 FG 232 G Sbjct: 223 RG 224 >gi|255606123|ref|XP_002538507.1| Response regulator gacA, putative [Ricinus communis] gi|223511807|gb|EEF23876.1| Response regulator gacA, putative [Ricinus communis] Length = 268 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 38/74 (51%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L+ + + + L+ RE +L +G +E+IA+ L LSV TV Y + KL + Sbjct: 193 LQTLEDKGDPMQQLSAREFEIFRLLAEGKETEDIAQALKLSVKTVANYQTTIKQKLGITS 252 Query: 221 RIQAIAKAIRFGYI 234 ++ + AIR G I Sbjct: 253 PVEMVRLAIRHGVI 266 >gi|218283881|ref|ZP_03489767.1| hypothetical protein EUBIFOR_02363 [Eubacterium biforme DSM 3989] gi|218215544|gb|EEC89082.1| hypothetical protein EUBIFOR_02363 [Eubacterium biforme DSM 3989] Length = 217 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +L++ E + G GY+++EIA+KLG S T+ YL KLD +R Q Sbjct: 156 DLSDTECKIIAQIGHGYSNKEIAQKLGFSEGTIRNYLSVILDKLDLRDRTQ 206 >gi|206562110|ref|YP_002232873.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] gi|198038150|emb|CAR54100.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] Length = 262 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 17/157 (10%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV 145 P W I+ IE R + GL +G++ P+R NG ++ + + E+ Sbjct: 113 PYRWADIRGLNRIEQRVLGEAR-DAGLT--SGVSIPLR---ETNGDILLVN-LASPSPEI 165 Query: 146 IIEAH-------GACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 E H GA + + L K R A L+ R+ CL G +S IA Sbjct: 166 KTEVHMRLASSIGALFH--QELHRLMKPHRPEPALELSPRQQECLAWVARGKSSWAIASI 223 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G+S HTV+ ++ A L +R A A+ G I Sbjct: 224 VGISPHTVDYHIAEAMKILGINSRTAAAVHAVTTGLI 260 >gi|116072236|ref|ZP_01469503.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] gi|116064758|gb|EAU70517.1| transcriptional regulator, LuxR family protein [Synechococcus sp. BL107] Length = 227 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE+ L+ G +++E+AE L +S T+ +++ + KL +R QA+ AIR G Sbjct: 168 LSDRESEVLEALCQGMSNKEMAEVLFVSPETIKSHVSTVIGKLGVKDRTQAVISAIRAG 226 >gi|117624058|ref|YP_852971.1| DNA-binding transcriptional activator SdiA [Escherichia coli APEC O1] gi|161486200|ref|NP_754222.2| DNA-binding transcriptional activator SdiA [Escherichia coli CFT073] gi|162138422|ref|YP_541121.2| DNA-binding transcriptional activator SdiA [Escherichia coli UTI89] gi|191173269|ref|ZP_03034799.1| regulatory protein SdiA [Escherichia coli F11] gi|218558774|ref|YP_002391687.1| DNA-binding transcriptional activator SdiA [Escherichia coli S88] gi|218699520|ref|YP_002407149.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI39] gi|227885657|ref|ZP_04003462.1| LuxR family protein [Escherichia coli 83972] gi|300982244|ref|ZP_07175956.1| autoinducer binding domain protein [Escherichia coli MS 200-1] gi|300993973|ref|ZP_07180620.1| autoinducer binding domain protein [Escherichia coli MS 45-1] gi|301050730|ref|ZP_07197588.1| autoinducer binding domain protein [Escherichia coli MS 185-1] gi|306814260|ref|ZP_07448426.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101] gi|331647509|ref|ZP_08348601.1| regulatory protein SdiA [Escherichia coli M605] gi|115513182|gb|ABJ01257.1| DNA-binding transcriptional activator [Escherichia coli APEC O1] gi|190906386|gb|EDV65995.1| regulatory protein SdiA [Escherichia coli F11] gi|218365543|emb|CAR03270.1| DNA-binding transcriptional activator [Escherichia coli S88] gi|218369506|emb|CAR17273.1| DNA-binding transcriptional activator [Escherichia coli IAI39] gi|222033657|emb|CAP76398.1| Regulatory protein sdiA [Escherichia coli LF82] gi|227837230|gb|EEJ47696.1| LuxR family protein [Escherichia coli 83972] gi|281178978|dbj|BAI55308.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli SE15] gi|294493959|gb|ADE92715.1| regulatory protein SdiA [Escherichia coli IHE3034] gi|300297547|gb|EFJ53932.1| autoinducer binding domain protein [Escherichia coli MS 185-1] gi|300307314|gb|EFJ61834.1| autoinducer binding domain protein [Escherichia coli MS 200-1] gi|300406419|gb|EFJ89957.1| autoinducer binding domain protein [Escherichia coli MS 45-1] gi|305852419|gb|EFM52870.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101] gi|307553930|gb|ADN46705.1| DNA-binding transcriptional activator [Escherichia coli ABU 83972] gi|307626607|gb|ADN70911.1| DNA-binding transcriptional activator SdiA [Escherichia coli UM146] gi|312946508|gb|ADR27335.1| DNA-binding transcriptional activator SdiA [Escherichia coli O83:H1 str. NRG 857C] gi|315286610|gb|EFU46043.1| autoinducer binding domain protein [Escherichia coli MS 110-3] gi|315290297|gb|EFU49675.1| autoinducer binding domain protein [Escherichia coli MS 153-1] gi|315296532|gb|EFU55829.1| autoinducer binding domain protein [Escherichia coli MS 16-3] gi|320194372|gb|EFW69003.1| DNA-binding transcriptional activator SdiA [Escherichia coli WV_060327] gi|323186796|gb|EFZ72116.1| regulatory protein sdiA [Escherichia coli RN587/1] gi|323952411|gb|EGB48284.1| autoinducer binding domain-containing protein [Escherichia coli H252] gi|323956313|gb|EGB52056.1| autoinducer binding domain-containing protein [Escherichia coli H263] gi|324007279|gb|EGB76498.1| autoinducer binding domain protein [Escherichia coli MS 57-2] gi|324013560|gb|EGB82779.1| autoinducer binding domain protein [Escherichia coli MS 60-1] gi|330911724|gb|EGH40234.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator [Escherichia coli AA86] gi|331043233|gb|EGI15371.1| regulatory protein SdiA [Escherichia coli M605] Length = 240 Score = 38.9 bits (89), Expect = 0.53, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|320325287|gb|EFW81354.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. glycinea str. B076] Length = 189 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ELF + A L+ RET L+ G + EIAE +S TV ++ + + KL+ Sbjct: 119 ELFPQ--PAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTA 176 Query: 222 IQAIAKAIRFGYI 234 QA+ KAI G + Sbjct: 177 KQAVYKAINIGMV 189 >gi|320198610|gb|EFW73210.1| DNA-binding transcriptional activator SdiA [Escherichia coli EC4100B] Length = 240 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|302545100|ref|ZP_07297442.1| epstein-Barr nuclear antigen 1 [Streptomyces hygroscopicus ATCC 53653] gi|302462718|gb|EFL25811.1| epstein-Barr nuclear antigen 1 [Streptomyces himastatinicus ATCC 53653] Length = 377 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 AR RE L L +GY + A KLGLSV T Y+ L+ +R QA +A Sbjct: 309 GGARGRVLREV--LTLMAEGYKDDAAARKLGLSVRTYRRYVADIMRDLNVESRFQAGVRA 366 Query: 229 IRFGYI 234 +R G + Sbjct: 367 VRAGLM 372 >gi|312195087|ref|YP_004015148.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311226423|gb|ADP79278.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 257 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 1/93 (1%) Query: 142 ANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 A+ V + G V+ D ++ + +LT RE L+L G ++++ A +LG+ Sbjct: 152 ADGVPVFGAGLAALVLGDLSRAARRPAEPGTPSLTAREIEVLRLVAKGLSAKDAAARLGV 211 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 S TV ++ + KL NR++ A+R GY Sbjct: 212 SPRTVQNHVHNVLSKLRLRNRVELTRFAVRAGY 244 >gi|256022426|ref|ZP_05436291.1| DNA-binding transcriptional activator SdiA [Escherichia sp. 4_1_40B] Length = 240 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|269126536|ref|YP_003299906.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311494|gb|ACY97868.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 226 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G ++ EIA +L +S TV ++G+ KL +R+QA+ A G Sbjct: 159 TLTEREREVLKHVARGLSNAEIARELVVSETTVKTHVGNVLAKLGLRDRVQAVVYAYETG 218 Query: 233 Y 233 Sbjct: 219 M 219 >gi|284990646|ref|YP_003409200.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063891|gb|ADB74829.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 220 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 163 LFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L +RS A LTERE L L G G +++IA +LG+ TV A+L S ++ +R Sbjct: 134 LHARRSPVRAAELTEREQEVLALVGHGLANKQIARRLGIRESTVKAHLTSVFQRIGVRDR 193 Query: 222 IQA 224 A Sbjct: 194 TSA 196 >gi|182415000|ref|YP_001820066.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842214|gb|ACB76466.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 215 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 33/50 (66%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 S+ A LT+RE LQL + ++++EIA KLG+S+ TV+ + + KL+ Sbjct: 143 SNTADFLTDREREILQLVAESHSTKEIAAKLGISIKTVDNHRTNLMRKLN 192 >gi|182412194|ref|YP_001817260.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177839408|gb|ACB73660.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 214 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +++ RE L+ +G +S+EIA++LGLSV TV + S T + + Q A R G Sbjct: 143 DISTRERDVLRFVAEGLSSKEIAQRLGLSVRTVENHRASITRRTGLRSVAQLTLHAARLG 202 Query: 233 YI 234 + Sbjct: 203 LV 204 >gi|170683439|ref|YP_001743327.1| DNA-binding transcriptional activator SdiA [Escherichia coli SMS-3-5] gi|256017886|ref|ZP_05431751.1| DNA-binding transcriptional activator SdiA [Shigella sp. D9] gi|307314177|ref|ZP_07593787.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|309795974|ref|ZP_07690387.1| autoinducer binding domain protein [Escherichia coli MS 145-7] gi|170521157|gb|ACB19335.1| regulatory protein SdiA [Escherichia coli SMS-3-5] gi|306906146|gb|EFN36664.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|308120424|gb|EFO57686.1| autoinducer binding domain protein [Escherichia coli MS 145-7] gi|315061216|gb|ADT75543.1| DNA-binding transcriptional activator [Escherichia coli W] gi|323378207|gb|ADX50475.1| transcriptional regulator, LuxR family [Escherichia coli KO11] gi|323968333|gb|EGB63740.1| autoinducer binding domain-containing protein [Escherichia coli M863] gi|327253047|gb|EGE64701.1| regulatory protein sdiA [Escherichia coli STEC_7v] Length = 240 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|237705872|ref|ZP_04536353.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA] gi|26108586|gb|AAN80789.1|AE016762_42 Regulatory protein sdiA [Escherichia coli CFT073] gi|91072709|gb|ABE07590.1| regulatory protein SdiA [Escherichia coli UTI89] gi|226900629|gb|EEH86888.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA] Length = 244 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 183 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 242 Query: 233 YI 234 I Sbjct: 243 LI 244 >gi|332278913|ref|ZP_08391326.1| regulatory protein sdiA [Shigella sp. D9] gi|332101265|gb|EGJ04611.1| regulatory protein sdiA [Shigella sp. D9] Length = 244 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 183 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 242 Query: 233 YI 234 I Sbjct: 243 LI 244 >gi|302550833|ref|ZP_07303175.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468451|gb|EFL31544.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 215 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 150 APRLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 209 Query: 231 FG 232 G Sbjct: 210 RG 211 >gi|290956780|ref|YP_003487962.1| luxR-type transcriptional regulator [Streptomyces scabiei 87.22] gi|260646306|emb|CBG69401.1| putative luxR-type transcriptional regulator [Streptomyces scabiei 87.22] Length = 293 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 32/67 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E F +A LTERE L G T+ E+A L +S TV + L S+ K NR Sbjct: 220 EPFTAEKTARAALTEREREILTKVATGATNREVAAALSISAETVKSSLTSSMRKFGVRNR 279 Query: 222 IQAIAKA 228 + +A A Sbjct: 280 VALVAAA 286 >gi|302517773|ref|ZP_07270115.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302426668|gb|EFK98483.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 219 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ EIA +L + TV ++ + KL A +R QA+ A G Sbjct: 149 GLTGREGEVLRLMARGLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSG 208 Query: 233 YIC 235 ++ Sbjct: 209 FVA 211 >gi|302530690|ref|ZP_07283032.1| response regulator [Streptomyces sp. AA4] gi|302439585|gb|EFL11401.1| response regulator [Streptomyces sp. AA4] Length = 204 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 2/61 (3%) Query: 160 FLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 F E ++++ AR LT+RE L+L DG S+ IA +LG SV TV+ + K Sbjct: 127 FAEHAERQAVRARLDTLTQREREVLRLVVDGMPSQAIAHRLGTSVKTVDVHRARIKAKTS 186 Query: 218 A 218 A Sbjct: 187 A 187 >gi|253577576|ref|ZP_04854888.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843045|gb|EES71081.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 227 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +TERE L L +G ++++IAE+L +S+ TV ++ + +K + +R Q A R G Sbjct: 163 GMTEREKEVLLLIAEGKSNKDIAEELHISIKTVKTHVSNLLMKCELEDRTQLAIYAHRQG 222 Query: 233 YI 234 ++ Sbjct: 223 WV 224 >gi|209919338|ref|YP_002293422.1| DNA-binding transcriptional activator SdiA [Escherichia coli SE11] gi|293446298|ref|ZP_06662720.1| regulatory protein sdiA [Escherichia coli B088] gi|209912597|dbj|BAG77671.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli SE11] gi|291323128|gb|EFE62556.1| regulatory protein sdiA [Escherichia coli B088] Length = 244 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 183 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 242 Query: 233 YI 234 I Sbjct: 243 LI 244 >gi|163759735|ref|ZP_02166820.1| putative two-component response regulator protein [Hoeflea phototrophica DFL-43] gi|162283332|gb|EDQ33618.1| putative two-component response regulator protein [Hoeflea phototrophica DFL-43] Length = 217 Score = 38.9 bits (89), Expect = 0.54, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK NLT RE LQL +G +++E+ L L T+ Y+ + KL NR++A Sbjct: 145 KKPEHPIDNLTRREEQILQLVANGLSNKEVGAALDLQEKTIKHYMTNILQKLHVRNRVEA 204 >gi|115265604|dbj|BAF32866.1| transcriptional regulator of LuxR family [Pseudomonas syringae pv. actinidiae] gi|330966735|gb|EGH66995.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 77 Score = 38.9 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + S +NLT+RE L+ + +G T+ +IA L L T++ ++ SA K+ N+ A Sbjct: 10 QPSPTKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAV 69 Query: 227 KA 228 +A Sbjct: 70 QA 71 >gi|28871776|ref|NP_794395.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|213966768|ref|ZP_03394919.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301383276|ref|ZP_07231694.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302062485|ref|ZP_07254026.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302133467|ref|ZP_07259457.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28855028|gb|AAO58090.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|213928618|gb|EEB62162.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|331018915|gb|EGH98971.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 77 Score = 38.9 bits (89), Expect = 0.54, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + S +NLT+RE L+ + +G T+ +IA L L T++ ++ SA K+ N+ A Sbjct: 10 QPSPTKNLTQREIEVLKWSAEGKTAGDIAMILCLKERTIHFHIASAIQKMGVCNKTAAAV 69 Query: 227 KA 228 +A Sbjct: 70 QA 71 >gi|229490268|ref|ZP_04384110.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229322800|gb|EEN88579.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 224 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%) Query: 152 ACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +IT FL + + S + LT RE + L G +++EIA +L +S T + Sbjct: 132 ATSALITRFLSIPSRADSTSGIFGQLTPRELEVVTLVAMGMSNDEIAAELVISAVTAKTH 191 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYIC 235 + A KLD +R Q + A + G + Sbjct: 192 VNRAMTKLDVRDRAQLVVLAYQCGLVV 218 >gi|222082450|ref|YP_002541815.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221727129|gb|ACM30218.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 214 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 71/178 (39%), Gaps = 32/178 (17%) Query: 63 DIPNILIETYGDDFLFHFN---SGL--LPIIWQSIQEE-----TVIESSGQLSVRLEGGL 112 D I+ E+ D L + GL +P+I + + ++ TV E+S ++ L G Sbjct: 41 DAVRIVAESRPDVLLMDISMPGGGLEAIPLILEHVPDQKIVMLTVSEASDDVTTALRSG- 99 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA- 171 GYV+ LA + A G Y T L + +A Sbjct: 100 ---------------AKGYVLKGVGSRTLAEILRTVASGETYVAPTLSARLISGQGAAPA 144 Query: 172 -----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R LT+RE+ LQL G ++++I KL L TV ++ KL NR +A Sbjct: 145 KADLIRELTDRESEVLQLVATGLSNKQIGLKLDLHEKTVKHHMTQIFTKLGVANRTEA 202 >gi|307155198|ref|YP_003890582.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306985426|gb|ADN17307.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 248 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G + +IAEKL ++V TV ++ + KL +R QA +A+R G Sbjct: 187 LTDRELDVLELIVAGCNNAQIAEKLYITVGTVKTHVRNILNKLCVNDRTQAAVRALRSGL 246 Query: 234 I 234 + Sbjct: 247 V 247 >gi|161724871|emb|CAO85746.1| rR protein [Pseudomonas putida] Length = 240 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+A L+ RE LQL G T EIA G+S TV ++ + + KL N QA+ + Sbjct: 174 SAADGPLSTRELGVLQLVMRGKTYREIATDCGISERTVKFHMSNISGKLQVGNAKQAVYE 233 Query: 228 AIRFGYI 234 A R G I Sbjct: 234 AKRQGII 240 >gi|323961965|gb|EGB57564.1| autoinducer binding domain-containing protein [Escherichia coli H489] Length = 240 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|320093927|ref|ZP_08025762.1| LuxR family DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319979139|gb|EFW10647.1| LuxR family DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 215 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Query: 152 ACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +V+ D L ++R+ +LT E L L GDG ++ EI EKLG++ TV + Sbjct: 126 ADGRVLLDERTLTRRRTDHEDPTADLTPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNH 185 Query: 209 LGSATVKLDAVNRIQAIA 226 + S K+ R Q A Sbjct: 186 ITSLLSKMGLQRRTQVAA 203 >gi|318060416|ref|ZP_07979139.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318078887|ref|ZP_07986219.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 219 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ EIA +L + TV ++ + KL A +R QA+ A G Sbjct: 149 GLTGREGEVLRLMARGLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSG 208 Query: 233 YIC 235 ++ Sbjct: 209 FVA 211 >gi|300935891|ref|ZP_07150848.1| autoinducer binding domain protein [Escherichia coli MS 21-1] gi|300458941|gb|EFK22434.1| autoinducer binding domain protein [Escherichia coli MS 21-1] Length = 240 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|302561339|ref|ZP_07313681.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302478957|gb|EFL42050.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 220 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE+ L L G+G ++ + +L +S TV Y+ KLD NR+QA Sbjct: 155 GLTARESEVLALLGEGLSNADAGARLHMSEATVKTYVSRILTKLDCENRVQA 206 >gi|297543959|ref|YP_003676261.1| LuxR family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841734|gb|ADH60250.1| transcriptional regulator, LuxR family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 129 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 1/118 (0%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLTE 176 IA P+ + GY+ ++ +A+E++ Y+++ ++ E+ + LT+ Sbjct: 11 IAMPLDIDNDIVGYLDISTIKHNMADEMMGFIDLLVYKIVNEYKREMDLESQEDLEKLTD 70 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ ++ +GY I+ +LG+ TV + KL N QAIAKAI+ I Sbjct: 71 KQIEIIKKCANGYKEIAISRELGIKPETVKYHKKEIVRKLRVKNFQQAIAKAIKLNLI 128 >gi|225352276|ref|ZP_03743299.1| hypothetical protein BIFPSEUDO_03892 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225157523|gb|EEG70862.1| hypothetical protein BIFPSEUDO_03892 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 223 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 28/50 (56%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +RE + L G+TS+EI KLG+ TV Y+ KL A NR QA+ Sbjct: 163 KREREVMGLCSLGFTSKEIGIKLGIGEPTVKTYIRRVMKKLGAKNRTQAV 212 >gi|157161388|ref|YP_001458706.1| DNA-binding transcriptional activator SdiA [Escherichia coli HS] gi|170019746|ref|YP_001724700.1| DNA-binding transcriptional activator SdiA [Escherichia coli ATCC 8739] gi|218689909|ref|YP_002398121.1| DNA-binding transcriptional activator SdiA [Escherichia coli ED1a] gi|218705411|ref|YP_002412930.1| DNA-binding transcriptional activator SdiA [Escherichia coli UMN026] gi|300899169|ref|ZP_07117448.1| autoinducer binding domain protein [Escherichia coli MS 198-1] gi|300928947|ref|ZP_07144451.1| autoinducer binding domain protein [Escherichia coli MS 187-1] gi|331673434|ref|ZP_08374202.1| regulatory protein SdiA [Escherichia coli TA280] gi|331683468|ref|ZP_08384069.1| regulatory protein SdiA [Escherichia coli H299] gi|157067068|gb|ABV06323.1| regulatory protein SdiA [Escherichia coli HS] gi|169754674|gb|ACA77373.1| transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|218427473|emb|CAR08247.1| DNA-binding transcriptional activator [Escherichia coli ED1a] gi|218432508|emb|CAR13401.1| DNA-binding transcriptional activator [Escherichia coli UMN026] gi|300357228|gb|EFJ73098.1| autoinducer binding domain protein [Escherichia coli MS 198-1] gi|300463101|gb|EFK26594.1| autoinducer binding domain protein [Escherichia coli MS 187-1] gi|331069632|gb|EGI41019.1| regulatory protein SdiA [Escherichia coli TA280] gi|331079683|gb|EGI50880.1| regulatory protein SdiA [Escherichia coli H299] Length = 240 Score = 38.9 bits (89), Expect = 0.55, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|326801506|ref|YP_004319325.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326552270|gb|ADZ80655.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 207 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +T RE LQL G G T++++A++L +S HTV ++ K + N I I A + Sbjct: 147 ITRREKEVLQLIGKGLTTQQVADQLFISPHTVESHRKKLMEKFEVNNIISVIKLATDY 204 >gi|325496964|gb|EGC94823.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii ECD227] Length = 240 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 34/66 (51%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + A ++RET L+ +G TS EIA L +S +TVN + + K +A N+ Q A Sbjct: 175 TPAMRFSKRETEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYA 234 Query: 229 IRFGYI 234 G I Sbjct: 235 AATGII 240 >gi|320191891|gb|EFW66538.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. EC1212] Length = 240 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|304398340|ref|ZP_07380214.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304354206|gb|EFM18579.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 209 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY++ SE +L ++ + G + + +L+ + + R LT+RE LQ Sbjct: 103 DGYLLKDSEPEILLGHILQASRGEKVFSEGVASYLDNRQHSADPLRLLTDRECDVLQEVA 162 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G +++EIA L +S TV ++ + KLD +R+ A Sbjct: 163 RGLSNKEIAAILHISEETVKVHIRNLLRKLDVRSRVAA 200 >gi|282866345|ref|ZP_06275390.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282558741|gb|EFB64298.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 224 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A G Sbjct: 156 RLTEREREVMLLVAQGLSNGEIAGRLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETG 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|229489605|ref|ZP_04383468.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229323702|gb|EEN89460.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 230 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 2/94 (2%) Query: 143 NEVIIEAHGA--CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + +IEA Q + LE + LT RE L+ G ++ EIA K + Sbjct: 127 GDAVIEARATRRLLQHVGPLLEGSAPEAQLPEELTPREVEVLEAMAYGLSNSEIAAKFHV 186 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV ++G K + +R+QA+ A + G + Sbjct: 187 SETTVKTHVGRVLSKTHSRDRVQAVVFAFQIGLV 220 >gi|225857575|ref|YP_002739086.1| response regulator [Streptococcus pneumoniae P1031] gi|225725289|gb|ACO21141.1| response regulator [Streptococcus pneumoniae P1031] Length = 199 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G +++EIA++L LS T+ Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|172040144|ref|YP_001799858.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171851448|emb|CAQ04424.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 264 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L G +++EIAEKL +S+ TV ++G +K + +R+ A+ A++ Sbjct: 194 LTRREREILCLIAKGQSNQEIAEKLFISLPTVKTHVGRVLMKTGSRDRVHAVLFALK 250 >gi|117165193|emb|CAJ88749.1| putative regulatory protein [Streptomyces ambofaciens ATCC 23877] Length = 608 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 18/109 (16%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARN--------- 173 + G+++F +E A+ + AH GA T + L +R AR Sbjct: 490 LERRGFLLFAAE----AHAQAVGAHRDPGAARTARTRAVAL-ARRCEGARTPALSGLALG 544 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT R+ + LA G ++ +IAE+L LSV TV +L A +L A +R Sbjct: 545 ELTARQRQIVTLAAAGLSNRQIAERLTLSVRTVGNHLYGAYTRLGAGDR 593 >gi|91774800|ref|YP_544556.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91708787|gb|ABE48715.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 212 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT+RE LQ DG +++ IA KLG+S TV ++ KL +R++A A R Sbjct: 153 SLTDREQEILQFLADGLSNKAIARKLGISDTTVKVHVKHLLSKLRLTSRLEAAVWAHR 210 >gi|193066393|ref|ZP_03047441.1| regulatory protein SdiA [Escherichia coli E22] gi|192925978|gb|EDV80624.1| regulatory protein SdiA [Escherichia coli E22] Length = 240 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|191168286|ref|ZP_03030079.1| regulatory protein SdiA [Escherichia coli B7A] gi|194429919|ref|ZP_03062429.1| regulatory protein SdiA [Escherichia coli B171] gi|218554500|ref|YP_002387413.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI1] gi|260844320|ref|YP_003222098.1| DNA-binding transcriptional activator SdiA [Escherichia coli O103:H2 str. 12009] gi|260868508|ref|YP_003234910.1| DNA-binding transcriptional activator SdiA [Escherichia coli O111:H- str. 11128] gi|293410275|ref|ZP_06653851.1| conserved hypothetical protein [Escherichia coli B354] gi|300818660|ref|ZP_07098868.1| autoinducer binding domain protein [Escherichia coli MS 107-1] gi|300925008|ref|ZP_07140932.1| autoinducer binding domain protein [Escherichia coli MS 182-1] gi|301327706|ref|ZP_07220912.1| autoinducer binding domain protein [Escherichia coli MS 78-1] gi|331668610|ref|ZP_08369458.1| regulatory protein SdiA [Escherichia coli TA271] gi|331677801|ref|ZP_08378476.1| regulatory protein SdiA [Escherichia coli H591] gi|190901658|gb|EDV61414.1| regulatory protein SdiA [Escherichia coli B7A] gi|194412008|gb|EDX28320.1| regulatory protein SdiA [Escherichia coli B171] gi|218361268|emb|CAQ98852.1| DNA-binding transcriptional activator [Escherichia coli IAI1] gi|257759467|dbj|BAI30964.1| DNA-binding transcriptional activator SdiA [Escherichia coli O103:H2 str. 12009] gi|257764864|dbj|BAI36359.1| DNA-binding transcriptional activator SdiA [Escherichia coli O111:H- str. 11128] gi|284921829|emb|CBG34902.1| regulatory protein [Escherichia coli 042] gi|291470743|gb|EFF13227.1| conserved hypothetical protein [Escherichia coli B354] gi|300418843|gb|EFK02154.1| autoinducer binding domain protein [Escherichia coli MS 182-1] gi|300528832|gb|EFK49894.1| autoinducer binding domain protein [Escherichia coli MS 107-1] gi|300845750|gb|EFK73510.1| autoinducer binding domain protein [Escherichia coli MS 78-1] gi|323158600|gb|EFZ44614.1| regulatory protein sdiA [Escherichia coli E128010] gi|323180833|gb|EFZ66373.1| regulatory protein sdiA [Escherichia coli 1180] gi|331063804|gb|EGI35715.1| regulatory protein SdiA [Escherichia coli TA271] gi|331074261|gb|EGI45581.1| regulatory protein SdiA [Escherichia coli H591] Length = 240 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|254477704|ref|ZP_05091090.1| transcriptional regulator, LuxR family protein [Ruegeria sp. R11] gi|214031947|gb|EEB72782.1| transcriptional regulator, LuxR family protein [Ruegeria sp. R11] Length = 261 Score = 38.9 bits (89), Expect = 0.56, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+R+ L L +G + IAE LGLS V+ + +A L A R A+A A+ G+ Sbjct: 199 LTQRQREVLSLLAEGMMTARIAETLGLSEAAVSLHFANARKALGASTREHALALALTRGF 258 Query: 234 I 234 I Sbjct: 259 I 259 >gi|301018234|ref|ZP_07182749.1| autoinducer binding domain protein [Escherichia coli MS 69-1] gi|300399821|gb|EFJ83359.1| autoinducer binding domain protein [Escherichia coli MS 69-1] Length = 240 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|294142230|ref|YP_003558208.1| LuxR family transcriptional regulator [Shewanella violacea DSS12] gi|293328699|dbj|BAJ03430.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12] Length = 250 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L + +G +S EI ++ TV +L + KL+ NR QAI AIR G Sbjct: 190 LTKREREILAWSSEGKSSWEIGMICSITERTVKFHLKNIYKKLNVQNRAQAIVCAIRQGL 249 Query: 234 I 234 I Sbjct: 250 I 250 >gi|13990973|dbj|BAB47256.1| LuxR family quorum-sensing transcription factor [Agrobacterium tumefaciens] Length = 269 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 2/58 (3%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA--VNRIQAIAK 227 R L+ RE CL+ A G T+ E A G++ TV YL A KL+A V + AIAK Sbjct: 207 RLLSPREAMCLKWAAKGKTAPETAILTGINPRTVQHYLDKAREKLEAATVPHLVAIAK 264 >gi|295698853|ref|YP_003606746.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295438066|gb|ADG17235.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 220 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 30/61 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L GYT IAEKLGLS TV + K A N +Q A R Sbjct: 150 RQLSAREFEVLRLLVQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGADNGVQLAQMASRL 209 Query: 232 G 232 G Sbjct: 210 G 210 >gi|262282221|ref|ZP_06059990.1| response regulator [Streptococcus sp. 2_1_36FAA] gi|262262675|gb|EEY81372.1| response regulator [Streptococcus sp. 2_1_36FAA] Length = 210 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 33/56 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A Sbjct: 144 DLTARERDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYA 199 >gi|227820412|ref|YP_002824383.1| two-component response regulator protein [Sinorhizobium fredii NGR234] gi|227339411|gb|ACP23630.1| probable two-component response regulator protein [Sinorhizobium fredii NGR234] Length = 305 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT+RE+ L G ++ +I E LGLS TV +L VKL NR A KA + Sbjct: 243 HLTQRESEVLLWIAKGKSNRDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKATQV 301 >gi|215487121|ref|YP_002329552.1| DNA-binding transcriptional activator SdiA [Escherichia coli O127:H6 str. E2348/69] gi|215265193|emb|CAS09582.1| DNA-binding transcriptional activator [Escherichia coli O127:H6 str. E2348/69] Length = 240 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|289424205|ref|ZP_06425988.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289426652|ref|ZP_06428381.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295129970|ref|YP_003580633.1| putative Two-component system response regulator [Propionibacterium acnes SK137] gi|289154902|gb|EFD03584.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289160147|gb|EFD08322.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291375832|gb|ADD99686.1| putative Two-component system response regulator [Propionibacterium acnes SK137] gi|313765489|gb|EFS36853.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313772962|gb|EFS38928.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313793016|gb|EFS41083.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313802535|gb|EFS43757.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313806550|gb|EFS45057.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313811098|gb|EFS48812.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313814401|gb|EFS52115.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313815108|gb|EFS52822.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313817418|gb|EFS55132.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313821840|gb|EFS59554.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313824266|gb|EFS61980.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313826630|gb|EFS64344.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313828631|gb|EFS66345.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313831864|gb|EFS69578.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834594|gb|EFS72308.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|314917145|gb|EFS80976.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314921419|gb|EFS85250.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926746|gb|EFS90577.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314931258|gb|EFS95089.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314954919|gb|EFS99325.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314958851|gb|EFT02953.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961142|gb|EFT05243.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964432|gb|EFT08532.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314969529|gb|EFT13627.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314974595|gb|EFT18690.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977213|gb|EFT21308.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314980470|gb|EFT24564.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314985689|gb|EFT29781.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314987215|gb|EFT31306.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314988893|gb|EFT32984.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315078555|gb|EFT50586.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082523|gb|EFT54499.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315086234|gb|EFT58210.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315087817|gb|EFT59793.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315097430|gb|EFT69406.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315099881|gb|EFT71857.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101810|gb|EFT73786.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315110233|gb|EFT82209.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327331484|gb|EGE73223.1| DNA-binding response regulator [Propionibacterium acnes HL096PA2] gi|327333470|gb|EGE75190.1| DNA-binding response regulator [Propionibacterium acnes HL096PA3] gi|327445507|gb|EGE92161.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327447125|gb|EGE93779.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327449840|gb|EGE96494.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327454686|gb|EGF01341.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456761|gb|EGF03416.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|327456969|gb|EGF03624.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|328756522|gb|EGF70138.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328758750|gb|EGF72366.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328761756|gb|EGF75270.1| DNA-binding response regulator [Propionibacterium acnes HL099PA1] gi|332674812|gb|AEE71628.1| two-component system response regulator [Propionibacterium acnes 266] Length = 206 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+LA G + IA +L LSV TV ++ SA K A NR +A A R G+ Sbjct: 146 LSGREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGW 205 Query: 234 I 234 + Sbjct: 206 L 206 >gi|33600173|ref|NP_887733.1| LuxR family transcriptional regulator [Bordetella bronchiseptica RB50] gi|33567771|emb|CAE31685.1| putative LuxR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 221 Score = 38.9 bits (89), Expect = 0.57, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 6/74 (8%) Query: 156 VITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++T L+L +R +A LTERE + A G ++ +IA +LG++ TV A+L Sbjct: 126 LVTRLLKLVDERVPSAPAPWQHDRLTERENAVALRAAHGDSNADIAGELGITERTVKAHL 185 Query: 210 GSATVKLDAVNRIQ 223 +A KL +R+Q Sbjct: 186 SAAFEKLGVSDRLQ 199 >gi|327334996|gb|EGE76707.1| DNA-binding response regulator [Propionibacterium acnes HL097PA1] Length = 179 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+LA G + IA +L LSV TV ++ SA K A NR +A A R G+ Sbjct: 119 LSGREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGW 178 Query: 234 I 234 + Sbjct: 179 L 179 >gi|324997109|ref|ZP_08118221.1| two component transcriptional regulator, LuxR family protein [Pseudonocardia sp. P1] Length = 126 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE LQ+ G T++EIA +L ++ TV A+L KL NR QA Sbjct: 54 TLTGRELEVLQVLAAGATNKEIAARLFIAPKTVGAHLARIFAKLGVTNRTQA 105 >gi|239940359|ref|ZP_04692296.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291443791|ref|ZP_06583181.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346738|gb|EFE73642.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 220 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G T+ EIA +L + T ++ + K A +R QA+ A G Sbjct: 156 RLTDREADVLRLMAAGLTNAEIAGRLSVGPATAKTHVAAVLAKTGARDRTQAVIAAYESG 215 Query: 233 YIC 235 +I Sbjct: 216 FIT 218 >gi|213970237|ref|ZP_03398368.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Pseudomonas syringae pv. tomato T1] gi|213925118|gb|EEB58682.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Pseudomonas syringae pv. tomato T1] Length = 185 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+ DG T E I + LG++ TV + + KL+A N+ A KA G Sbjct: 125 LSTREVEVLKWVADGKTGEVIGKVLGVTERTVTHHTVNIMQKLNATNKTAAAVKAALLGI 184 Query: 234 I 234 I Sbjct: 185 I 185 >gi|169833204|ref|YP_001695355.1| response regulator [Streptococcus pneumoniae Hungary19A-6] gi|168995706|gb|ACA36318.1| response regulator [Streptococcus pneumoniae Hungary19A-6] Length = 199 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G +++EIA++L LS T+ Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|156345617|ref|XP_001621420.1| hypothetical protein NEMVEDRAFT_v1g144964 [Nematostella vectensis] gi|156207332|gb|EDO29320.1| predicted protein [Nematostella vectensis] Length = 213 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA LTERE L+ G T+ +I + LGLS TVN +L VKL R A + A Sbjct: 146 SARFQLTEREVEVLRWVACGKTNRDIGDILGLSPRTVNKHLEHVYVKLGVETRTAATSVA 205 Query: 229 I 229 + Sbjct: 206 L 206 >gi|148977018|ref|ZP_01813664.1| response regulator [Vibrionales bacterium SWAT-3] gi|145963678|gb|EDK28939.1| response regulator [Vibrionales bacterium SWAT-3] Length = 210 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 4/99 (4%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ +E L E++ +AH A V+ +L R+ LTERE LQ Sbjct: 101 DGYLLKDTEPDELI-ELLKQAHSGDKAYSSVVARYLNDAGSRNDIFDQLTEREMQILQEV 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY +++IA+ L +S TV ++ S KL +R A Sbjct: 160 AKGYRNKQIADHLFISESTVKVHMKSLLKKLQVPSRTAA 198 >gi|84498193|ref|ZP_00996990.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84381693|gb|EAP97576.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 202 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 4/92 (4%) Query: 146 IIEAHGACYQVITDFLELF---KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +I H A Q+I +F L K ++A LTERE L L G ++EIA +L +S Sbjct: 108 MIPPHMAS-QLIAEFSRLSNEPPKEATAGPRLTERELEVLGLVARGKANKEIATQLFISE 166 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +TV ++ + KL +R++A A+R I Sbjct: 167 NTVKNHVRNILEKLQLHSRVEAALYAMRRNLI 198 >gi|307313911|ref|ZP_07593526.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306899185|gb|EFN29823.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 254 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 43/80 (53%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A Q ++ ++L +K LT RET L L G ++ IA++LGLS +TV ++ Sbjct: 162 AAQKQASSEDIDLERKIDFGQDLLTMRETQVLDLICVGMQNKIIADRLGLSENTVKVHVR 221 Query: 211 SATVKLDAVNRIQAIAKAIR 230 + K++ NR +A A+ R Sbjct: 222 NIYKKMNVRNRTEAAARYFR 241 >gi|306828869|ref|ZP_07462061.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|304429047|gb|EFM32135.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 199 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 41/73 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + + LTE+E + L+ G +++EIA++L LS TV Y+ + KL+A NR Sbjct: 127 ELMEVVMTHPNPLTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLNAGNR 186 Query: 222 IQAIAKAIRFGYI 234 +A A G++ Sbjct: 187 TEAANIATESGWL 199 >gi|298247492|ref|ZP_06971297.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550151|gb|EFH84017.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 886 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L L +G ++ EIA +L LSV TV + + KL +R QA+A+A R Sbjct: 826 LSGRELEVLGLIAEGLSNSEIARRLVLSVGTVKVHTRNIYGKLSVSSRTQALAQATRL 883 >gi|293405402|ref|ZP_06649394.1| regulatory protein sdiA [Escherichia coli FVEC1412] gi|298381046|ref|ZP_06990645.1| regulatory protein sdiA [Escherichia coli FVEC1302] gi|291427610|gb|EFF00637.1| regulatory protein sdiA [Escherichia coli FVEC1412] gi|298278488|gb|EFI20002.1| regulatory protein sdiA [Escherichia coli FVEC1302] Length = 244 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 183 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 242 Query: 233 YI 234 I Sbjct: 243 LI 244 >gi|291459358|ref|ZP_06598748.1| putative nitrate/nitrite response regulator protein NarL [Oribacterium sp. oral taxon 078 str. F0262] gi|291417957|gb|EFE91676.1| putative nitrate/nitrite response regulator protein NarL [Oribacterium sp. oral taxon 078 str. F0262] Length = 220 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE +L GYT+ EI+ +L ++ T ++ + KL + NR++A+ ++ + G Sbjct: 141 TLTEREREVYELMCQGYTNLEISARLFITEGTAKRHVSNILSKLGSKNRVEAVIQSGQKG 200 Query: 233 YI 234 Y+ Sbjct: 201 YL 202 >gi|226355186|ref|YP_002784926.1| LuxR family transcriptional regulator [Deinococcus deserti VCD115] gi|226317176|gb|ACO45172.1| putative Transcriptional regulator, LuxR family [Deinococcus deserti VCD115] Length = 762 Score = 38.9 bits (89), Expect = 0.58, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G + + IA++L +S TV+ ++ S KL NR++ A+R G Sbjct: 696 LTGREQDVLRLLAQGISDKRIAQQLNISAATVSKHVSSMLSKLGVHNRVELARWALRNG 754 >gi|226310595|ref|YP_002770489.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093543|dbj|BAH41985.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 209 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 34/59 (57%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + S LT RE L+L G G +++EIA++L + + TV ++ + KL+ +R QA Sbjct: 141 QESHPHEQLTPRELEVLKLIGQGKSNQEIADELIIGIKTVKTHVSNILAKLNVEDRTQA 199 >gi|254382632|ref|ZP_04997990.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194341535|gb|EDX22501.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 215 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 150 APQLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 209 Query: 231 FG 232 G Sbjct: 210 RG 211 >gi|21220598|ref|NP_626377.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|5689930|emb|CAB51968.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] Length = 215 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 150 APRLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 209 Query: 231 FG 232 G Sbjct: 210 RG 211 >gi|16265270|ref|NP_438062.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|15141410|emb|CAC49922.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] Length = 309 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE+ L G ++ +I E LGLS TV +L VKL NR A KA Sbjct: 248 LTQRESEVLLWIAKGKSNRDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKA 302 >gi|21220777|ref|NP_626556.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|7619763|emb|CAB88186.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 210 Score = 38.9 bits (89), Expect = 0.58, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ + DG T +IA L LS TV YL SA K NR +A+ A G+ Sbjct: 150 LTARECDVLRASADGATVADIAGALHLSESTVRNYLSSAIGKTGTRNRAEALRAARGQGW 209 Query: 234 I 234 + Sbjct: 210 L 210 >gi|332978141|gb|EGK14877.1| transcriptional regulatory protein DegU [Desmospora sp. 8437] Length = 92 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +L T++EIA++L +S TV ++ + KL+ R QA+ + +R G Sbjct: 30 LTNREREVFELLVQDKTTKEIAQQLFISEKTVRNHISNVMQKLNVKGRSQAVVELVRLGE 89 Query: 234 I 234 + Sbjct: 90 L 90 >gi|333028557|ref|ZP_08456621.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332748409|gb|EGJ78850.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 215 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ EIA +L + TV ++ + KL A +R QA+ A G Sbjct: 145 GLTGREGEVLRLMARGLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSG 204 Query: 233 YIC 235 ++ Sbjct: 205 FVA 207 >gi|320184745|gb|EFW59537.1| DNA-binding transcriptional activator SdiA [Shigella flexneri CDC 796-83] Length = 159 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 98 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 157 Query: 233 YI 234 I Sbjct: 158 LI 159 >gi|313840174|gb|EFS77888.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] Length = 206 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+LA G + IA +L LSV TV ++ SA K A NR +A A R G+ Sbjct: 146 LSGREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGW 205 Query: 234 I 234 + Sbjct: 206 L 206 >gi|182437087|ref|YP_001824806.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465603|dbj|BAG20123.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 214 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE L G G ++ EIA +L L TV A++ + KL A NR++A Sbjct: 148 RLTEREREVLAGLGAGLSNAEIASRLHLVEGTVKAHVSAVLAKLGARNRVEA 199 >gi|91777662|ref|YP_552870.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|296161446|ref|ZP_06844252.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|91690322|gb|ABE33520.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] gi|295888261|gb|EFG68073.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 220 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 30/61 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L GYT IAEKLGLS TV + K A N +Q A R Sbjct: 150 RQLSAREFEVLRLLVQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGADNGVQLAQMASRL 209 Query: 232 G 232 G Sbjct: 210 G 210 >gi|86739750|ref|YP_480150.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86566612|gb|ABD10421.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 238 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LT RE L+L +G + EIA KL +S +TV ++ + KL +R++A+ A+R Sbjct: 172 APHLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVR 231 Query: 231 FG 232 G Sbjct: 232 QG 233 >gi|312967117|ref|ZP_07781335.1| regulatory protein sdiA [Escherichia coli 2362-75] gi|312288581|gb|EFR16483.1| regulatory protein sdiA [Escherichia coli 2362-75] Length = 228 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 167 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 226 Query: 233 YI 234 I Sbjct: 227 LI 228 >gi|303246240|ref|ZP_07332520.1| two component transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] gi|302492303|gb|EFL52175.1| two component transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] Length = 218 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++A NLT RE +++ +G T++E+AE L +SV T + + KL N ++ + Sbjct: 151 ANAYDNLTAREREVMRMVVEGLTTKEVAEALAISVKTAEHHRCNLMRKLGLQNSVELVRY 210 Query: 228 AIRFGYI 234 A R G I Sbjct: 211 ASRLGLI 217 >gi|254442705|ref|ZP_05056181.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198257013|gb|EDY81321.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 200 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S LT+RE L G +++EIA +L L TV +L + KL +R QAI Sbjct: 131 SQVLSQLTKRELEVLAQVAKGRSNKEIANELNLVEGTVKVHLTNILSKLGVSDRTQAILA 190 Query: 228 AIRFGYI 234 A++ G I Sbjct: 191 AVKRGLI 197 >gi|111224202|ref|YP_714996.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111151734|emb|CAJ63454.1| putative two-component system response regulator [Frankia alni ACN14a] Length = 201 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L A DG T +IA +L LS TV YL S K NR++A+ A G+ Sbjct: 141 LTGRERDVLVAARDGATVADIAGRLFLSEGTVRNYLSSVIAKTGTRNRMEALRTAEESGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|92117422|ref|YP_577151.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91800316|gb|ABE62691.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 199 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +L++RE L L +G ++ IA +LG+SVHTV ++ + VKL A Sbjct: 124 HLSQREAEVLALLAEGAPNKVIARRLGISVHTVKFHVAALLVKLGAAK 171 >gi|32472133|ref|NP_865127.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH 1] gi|32397505|emb|CAD72811.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH 1] gi|327539236|gb|EGF25859.1| two-component system response regulator [Rhodopirellula baltica WH47] Length = 210 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE+ L+ G T++EIA+ LG+S TV ++ KL +R QA A+R Sbjct: 150 LTQRESEVLRQMALGLTNKEIAKMLGISYETVKEHVQHILRKLGVSDRTQAAVWAVR 206 >gi|16129863|ref|NP_416426.1| quorum-sensing transcriptional activator [Escherichia coli str. K-12 substr. MG1655] gi|89108751|ref|AP_002531.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. W3110] gi|170081564|ref|YP_001730884.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. DH10B] gi|238901125|ref|YP_002926921.1| DNA-binding transcriptional activator [Escherichia coli BW2952] gi|253773131|ref|YP_003035962.1| DNA-binding transcriptional activator SdiA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|2506570|sp|P07026|SDIA_ECOLI RecName: Full=Regulatory protein SdiA gi|1736575|dbj|BAA15736.1| DNA-binding transcriptional activator [Escherichia coli str. K12 substr. W3110] gi|1788224|gb|AAC74983.1| quorum-sensing transcriptional activator [Escherichia coli str. K-12 substr. MG1655] gi|169889399|gb|ACB03106.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. DH10B] gi|238860878|gb|ACR62876.1| DNA-binding transcriptional activator [Escherichia coli BW2952] gi|253324175|gb|ACT28777.1| transcriptional regulator, LuxR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448967|gb|ACX39389.1| transcriptional regulator, LuxR family [Escherichia coli DH1] gi|315136553|dbj|BAJ43712.1| DNA-binding transcriptional activator SdiA [Escherichia coli DH1] Length = 240 Score = 38.9 bits (89), Expect = 0.59, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|332185674|ref|ZP_08387421.1| bacterial regulatory s, luxR family protein [Sphingomonas sp. S17] gi|332014032|gb|EGI56090.1| bacterial regulatory s, luxR family protein [Sphingomonas sp. S17] Length = 260 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTE+E L+L G+ ++ +A++L LSVHT+N L A KL + +A+ Sbjct: 12 LTEKEKQTLRLIVRGHDAKSVAQQLDLSVHTINERLRDARRKLSVSSSREAV 63 >gi|315106440|gb|EFT78416.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] Length = 206 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+LA G + IA +L LSV TV ++ SA K A NR +A A R G+ Sbjct: 146 LSGREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGW 205 Query: 234 I 234 + Sbjct: 206 L 206 >gi|314915868|gb|EFS79699.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] Length = 206 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+LA G + IA +L LSV TV ++ SA K A NR +A A R G+ Sbjct: 146 LSGREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGW 205 Query: 234 I 234 + Sbjct: 206 L 206 >gi|307316768|ref|ZP_07596210.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306897390|gb|EFN28134.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 307 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE+ L G ++ +I E LGLS TV +L VKL NR A KA Sbjct: 246 LTQRESEVLLWIAKGKSNRDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKA 300 >gi|295394810|ref|ZP_06805025.1| LuxR family DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972406|gb|EFG48266.1| LuxR family DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 204 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 37/66 (56%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L ++ + +L+ RE LQ G+T++EIA++L +S TV +L KL NR Sbjct: 132 LTRRLTQPRTSLSARELEILQAVATGHTNKEIAQELFISQATVKTHLVHIFDKLGVDNRT 191 Query: 223 QAIAKA 228 A+AKA Sbjct: 192 SAVAKA 197 >gi|94497938|ref|ZP_01304503.1| probable two-component response regulator [Sphingomonas sp. SKA58] gi|94422666|gb|EAT07702.1| probable two-component response regulator [Sphingomonas sp. SKA58] Length = 260 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 37/61 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT ++ + L G +++IA LG+S+ T+ A++ + KL ++R QA+ KA R G Sbjct: 197 SLTPQQKTVLGHLVRGRLNKQIAHDLGVSMTTIKAHVSAILQKLGVLSRTQAVIKANRVG 256 Query: 233 Y 233 + Sbjct: 257 F 257 >gi|332663474|ref|YP_004446262.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332332288|gb|AEE49389.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 227 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++T RE LQL + YT+ EIAEKL +S TV+ + + KL N + AI++ Sbjct: 154 DITSREKEILQLICEEYTTSEIAEKLFISPRTVDGHRNNLLEKLSCKNVAGLVVYAIQYQ 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|329848633|ref|ZP_08263661.1| bacterial regulatory protein, luxR family protein [Asticcacaulis biprosthecum C19] gi|328843696|gb|EGF93265.1| bacterial regulatory protein, luxR family protein [Asticcacaulis biprosthecum C19] Length = 246 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 30/58 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ E CL +GY EI E G + T+ +Y SA KL A R A+A+A+R Sbjct: 184 GLSAGELLCLGHFANGYDISEIEEATGYTTETIYSYSKSAAKKLGARARTDAVAEAMR 241 >gi|312973873|ref|ZP_07788045.1| regulatory protein sdiA [Escherichia coli 1827-70] gi|310332468|gb|EFP99703.1| regulatory protein sdiA [Escherichia coli 1827-70] Length = 221 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 160 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 219 Query: 233 YI 234 I Sbjct: 220 LI 221 >gi|307301502|ref|ZP_07581262.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306903559|gb|EFN34147.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 305 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE+ L G ++ +I E LGLS TV +L VKL NR A KA Sbjct: 244 LTQRESEVLLWIAKGKSNRDIGEILGLSARTVTKHLEQIYVKLGVENRASAAVKA 298 >gi|228957309|ref|ZP_04119070.1| Two-component response regulator ComA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802342|gb|EEM49198.1| Two-component response regulator ComA [Bacillus thuringiensis serovar pakistani str. T13001] Length = 217 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 40/74 (54%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L++ +S+ +TE E + L G T++ I++KL +S T+ L KL+ + Sbjct: 136 LKVLDDQSNIDVTVTEEEQAILIEIDKGLTNKSISQKLHVSQRTIEHRLTLIFQKLNVTS 195 Query: 221 RIQAIAKAIRFGYI 234 RI+A+AKA G I Sbjct: 196 RIKAVAKAKELGLI 209 >gi|284991375|ref|YP_003409929.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064620|gb|ADB75558.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 219 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT RE ++L +G +S EIA L +S TV + + KLD +R Q AIR Sbjct: 155 RVLTAREAEVVKLIAEGCSSREIAALLVISTKTVERHRANILQKLDMRDRTQLTRYAIRT 214 Query: 232 GYI 234 G + Sbjct: 215 GLL 217 >gi|254427282|ref|ZP_05040989.1| Sigma-70, region 4 family [Alcanivorax sp. DG881] gi|196193451|gb|EDX88410.1| Sigma-70, region 4 family [Alcanivorax sp. DG881] Length = 301 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LEL K A ++T RE L G T+ EIA+ L LS TVN +L KL N Sbjct: 230 LELLKN----ALHVTHREAQVLVWIAHGKTNREIAQILELSPRTVNKHLEQIFRKLGVEN 285 Query: 221 RIQAIAKAIRF 231 R A A I++ Sbjct: 286 RTAAAAMVIQY 296 >gi|148998533|ref|ZP_01825974.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|168576597|ref|ZP_02722463.1| response regulator [Streptococcus pneumoniae MLV-016] gi|307068610|ref|YP_003877576.1| CheY-like receiver/HTH DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|147755726|gb|EDK62772.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|183577636|gb|EDT98164.1| response regulator [Streptococcus pneumoniae MLV-016] gi|306410147|gb|ADM85574.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Streptococcus pneumoniae AP200] Length = 199 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G +++EIA++L LS T+ Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|118471728|ref|YP_886067.1| transcriptional regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118173015|gb|ABK73911.1| transcriptional regulatory protein [Mycobacterium smegmatis str. MC2 155] Length = 897 Score = 38.9 bits (89), Expect = 0.60, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 30/54 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT +ET LA G T++EIA +L +S HTV +L VKL +R Q Sbjct: 822 SGEQLTAQETQVAGLAARGLTNQEIAAQLFISPHTVEWHLRKVFVKLGITSRRQ 875 >gi|116250894|ref|YP_766732.1| GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255542|emb|CAK06619.1| putative GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 159 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N+T RET ++ G T+ EI LG+S TVN ++ +A +L +A A+R G Sbjct: 97 NVTPRETEVIRWMAAGKTAAEIGTILGISHITVNTHIANAKARLGVFKDTALVAAALRNG 156 Query: 233 YI 234 I Sbjct: 157 II 158 >gi|114568884|ref|YP_755564.1| LuxR family transcriptional regulator [Maricaulis maris MCS10] gi|114339346|gb|ABI64626.1| transcriptional regulator, LuxR family [Maricaulis maris MCS10] Length = 141 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query: 164 FKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 F + +A ++L T RE L+ G +++E+A LG+S +TV ++ KLD +R Sbjct: 54 FVRNEAALKSLAITPRELDVLEALVSGESNKELARTLGVSPNTVKTHIARLFDKLDVTSR 113 Query: 222 IQAIAKA 228 IQAI A Sbjct: 114 IQAIETA 120 >gi|33864308|ref|NP_895868.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] gi|33641088|emb|CAE22217.1| two-component response regulator [Prochlorococcus marinus str. MIT 9313] Length = 241 Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + A N T RE S LQL +G ++EIA KL S+ V Y+ +K +R + + Sbjct: 173 KDVALHNFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVR 232 Query: 227 KAI 229 A+ Sbjct: 233 YAL 235 >gi|297193217|ref|ZP_06910615.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720487|gb|EDY64395.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 221 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NLT++E L L G+G T+ I E+L L+ T+ Y+ S KL R QA A R Sbjct: 156 NLTDQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSSLLSKLGMERRAQAAAYVARI 214 >gi|254393192|ref|ZP_05008347.1| two-component system regulator [Streptomyces clavuligerus ATCC 27064] gi|294811637|ref|ZP_06770280.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440178|ref|ZP_08214912.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706834|gb|EDY52646.1| two-component system regulator [Streptomyces clavuligerus ATCC 27064] gi|294324236|gb|EFG05879.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 223 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA L ++ TV ++G VKL +R QA A G Sbjct: 157 TLTERETEVLALIAQGLSNAEIATALVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|167033376|ref|YP_001668607.1| two component LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166859864|gb|ABY98271.1| two component transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 209 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE G ++ EIAE+LG+SV TV+ Y G +L A + + + AI G Sbjct: 140 GLTPRERDVFVPLVQGLSNREIAEQLGISVKTVDLYRGRVMKRLQAASLAELVGMAIACG 199 Query: 233 YI 234 + Sbjct: 200 AV 201 >gi|21223862|ref|NP_629641.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|4467257|emb|CAB37582.1| putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 1091 Score = 38.9 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L+L DG T+ +IAE+L +S T + ++ + KL R +A A A R Sbjct: 1017 ALGLTGRERDVLRLVSDGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHR 1076 Query: 231 FG 232 Sbjct: 1077 LA 1078 >gi|238027886|ref|YP_002912117.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1] gi|237877080|gb|ACR29413.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 243 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T +E+ ++ +G T+ EI L +S TV +L + KL NR QA+AK R G Sbjct: 182 QFTRKESEVVKWVVEGKTAWEIGRILCMSERTVKFHLTNVYEKLRVTNRAQAVAKVSRLG 241 Query: 233 YI 234 I Sbjct: 242 LI 243 >gi|153008009|ref|YP_001369224.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188] gi|151559897|gb|ABS13395.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188] Length = 277 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 2/72 (2%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +FKK S + LT +E L +G T EI+ LG++ TV +L ++ +KL A N+ Sbjct: 6 VFKK--SNRKLLTSQERIVLYWTAEGKTRWEISIILGVAETTVVTHLRNSRIKLGATNKT 63 Query: 223 QAIAKAIRFGYI 234 A+ +AIR I Sbjct: 64 HAVVEAIRHSEI 75 >gi|144899494|emb|CAM76358.1| regulatory protein, LuxR [Magnetospirillum gryphiswaldense MSR-1] Length = 253 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 4/154 (2%) Query: 86 PIIWQ--SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 PIIW S+ ++ + V + G+L A + GF + + + T + Sbjct: 99 PIIWGDLSLSDDADEQERRSFEVDCDFGILTGATLPASFADGFGASAFSVHTPDLSFAGF 158 Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + + +G + I ++ + L+ RE L +G ++IA L L Sbjct: 159 DRMWRENGEAIRQIACAFDICMREDHMPDFFPLSPREQEILLRLTEGLRPQQIAFLLSLH 218 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 TV ++ SA KL A QA+A A+ FG I Sbjct: 219 EGTVEKHIESARRKLKAATVTQAVATALIFGLIA 252 >gi|126433529|ref|YP_001069220.1| response regulator receiver protein [Mycobacterium sp. JLS] gi|126233329|gb|ABN96729.1| response regulator receiver protein [Mycobacterium sp. JLS] Length = 880 Score = 38.9 bits (89), Expect = 0.61, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 3/64 (4%) Query: 169 SAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 SAAR L + RE L +G T+ E+A++L +SV TV ++ + KLD +R + +A Sbjct: 798 SAARPLPLSSREHEVAVLVAEGLTNREVADRLTVSVRTVENHIYRSCAKLDLRDRAE-LA 856 Query: 227 KAIR 230 A+R Sbjct: 857 AAVR 860 >gi|28975412|gb|AAO61802.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus] gi|328469240|gb|EGF40186.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 223 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE + G ++++IAE+L +S +TV +L + K+D NR+QA+ A Sbjct: 157 LTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWA 211 >gi|50841898|ref|YP_055125.1| two-component system response regulator [Propionibacterium acnes KPA171202] gi|50839500|gb|AAT82167.1| two-component system response regulator [Propionibacterium acnes KPA171202] Length = 206 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+LA G + IA +L LSV TV ++ SA K A NR +A A R G+ Sbjct: 146 LSGREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGW 205 Query: 234 I 234 + Sbjct: 206 L 206 >gi|15802351|ref|NP_288377.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 EDL933] gi|15831908|ref|NP_310681.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. Sakai] gi|168751842|ref|ZP_02776864.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113] gi|168758227|ref|ZP_02783234.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401] gi|168771520|ref|ZP_02796527.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486] gi|168777340|ref|ZP_02802347.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196] gi|168790328|ref|ZP_02815335.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869] gi|168802260|ref|ZP_02827267.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508] gi|195939220|ref|ZP_03084602.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. EC4024] gi|208810274|ref|ZP_03252150.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206] gi|208816575|ref|ZP_03257695.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045] gi|208820421|ref|ZP_03260741.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042] gi|209399275|ref|YP_002271030.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115] gi|217329032|ref|ZP_03445113.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588] gi|254793566|ref|YP_003078403.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. TW14359] gi|261227589|ref|ZP_05941870.1| DNA-binding transcriptional activator [Escherichia coli O157:H7 str. FRIK2000] gi|261255819|ref|ZP_05948352.1| DNA-binding transcriptional activator [Escherichia coli O157:H7 str. FRIK966] gi|291283093|ref|YP_003499911.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str. CB9615] gi|12516014|gb|AAG56931.1|AE005414_8 transcriptional regulator of ftsQAZ gene cluster [Escherichia coli O157:H7 str. EDL933] gi|13362122|dbj|BAB36077.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli O157:H7 str. Sakai] gi|187767387|gb|EDU31231.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196] gi|188014167|gb|EDU52289.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113] gi|189354905|gb|EDU73324.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401] gi|189359736|gb|EDU78155.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486] gi|189370214|gb|EDU88630.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869] gi|189375707|gb|EDU94123.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508] gi|208724790|gb|EDZ74497.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206] gi|208730918|gb|EDZ79607.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045] gi|208740544|gb|EDZ88226.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042] gi|209160675|gb|ACI38108.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115] gi|209767028|gb|ACI81826.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767030|gb|ACI81827.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767032|gb|ACI81828.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767034|gb|ACI81829.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767036|gb|ACI81830.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|217318379|gb|EEC26806.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588] gi|254592966|gb|ACT72327.1| DNA-binding transcriptional activator [Escherichia coli O157:H7 str. TW14359] gi|290762966|gb|ADD56927.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str. CB9615] gi|320647124|gb|EFX15957.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H- str. 493-89] gi|320658009|gb|EFX25771.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658581|gb|EFX26275.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7 str. USDA 5905] gi|320668479|gb|EFX35306.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. LSU-61] gi|326342324|gb|EGD66105.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. 1044] gi|326344831|gb|EGD68578.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. 1125] Length = 240 Score = 38.9 bits (89), Expect = 0.61, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|313498513|gb|ADR59879.1| LuxR family DNA-binding response regulator [Pseudomonas putida BIRD-1] Length = 210 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE G + EIAE+LG+SV TV+ Y G +L A + + + AI G Sbjct: 141 GLTPRERDVFVPLAQGLNNREIAEQLGISVKTVDLYRGRVMKRLQASSLAELVGMAIACG 200 Query: 233 YI 234 + Sbjct: 201 AV 202 >gi|239986838|ref|ZP_04707502.1| two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 215 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G T+ EIA +L + T ++ + K A +R QA+ A G Sbjct: 151 RLTDREADVLRLMAAGLTNAEIAGRLSVGPATAKTHVAAVLAKTGARDRTQAVIAAYESG 210 Query: 233 YIC 235 +I Sbjct: 211 FIT 213 >gi|256377765|ref|YP_003101425.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922068|gb|ACU37579.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 217 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L L G G ++ IA +L L TV ++ + +LD NR+QA Sbjct: 155 LTPRERDVLALVGAGLSNARIARRLNLVEGTVKGHVSTILTRLDLANRVQA 205 >gi|307150230|ref|YP_003885614.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] gi|306980458|gb|ADN12339.1| GAF modulated transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 237 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A+ LT RE + L G T+ EI ++L ++ ++V L KLD +R Q +AK Sbjct: 173 SDWAKKLTSRELQIISLVAQGLTNTEIGQELWITQNSVKQALKRIFRKLDVRSRAQMVAK 232 >gi|194434963|ref|ZP_03067206.1| regulatory protein SdiA [Shigella dysenteriae 1012] gi|194416798|gb|EDX32924.1| regulatory protein SdiA [Shigella dysenteriae 1012] gi|320178182|gb|EFW53159.1| DNA-binding transcriptional activator SdiA [Shigella boydii ATCC 9905] gi|332095461|gb|EGJ00482.1| regulatory protein sdiA [Shigella dysenteriae 155-74] Length = 240 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|170690051|ref|ZP_02881218.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170144486|gb|EDT12647.1| two component transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 220 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 37/108 (34%), Positives = 46/108 (42%), Gaps = 6/108 (5%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-----AARNLTERETSCLQL 184 GYV S +L V A A Y + D + R++ R L+ RE L+L Sbjct: 104 GYVTKASAPDVLVEAVRTIARRASY-LSPDISQALALRNAFSEGPPGRQLSAREFEVLRL 162 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 GYT IAEKLGLS TV + K A N +Q A R G Sbjct: 163 LVQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGADNGVQLAQMASRLG 210 >gi|168487139|ref|ZP_02711647.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|194398168|ref|YP_002038583.1| response regulator [Streptococcus pneumoniae G54] gi|225861819|ref|YP_002743328.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|298230314|ref|ZP_06963995.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255058|ref|ZP_06978644.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503771|ref|YP_003725711.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|183569979|gb|EDT90507.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|194357835|gb|ACF56283.1| response regulator TCS11 [Streptococcus pneumoniae G54] gi|225728123|gb|ACO23974.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|298239366|gb|ADI70497.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|327389165|gb|EGE87511.1| response regulator [Streptococcus pneumoniae GA04375] Length = 199 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G +++EIA++L LS T+ Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|149024961|ref|ZP_01836341.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|225859757|ref|YP_002741267.1| response regulator [Streptococcus pneumoniae 70585] gi|147929454|gb|EDK80449.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|225720998|gb|ACO16852.1| response regulator [Streptococcus pneumoniae 70585] gi|301794941|emb|CBW37404.1| response regulator protein [Streptococcus pneumoniae INV104] gi|332200013|gb|EGJ14087.1| response regulator [Streptococcus pneumoniae GA47901] Length = 199 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G +++EIA++L LS T+ Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|28901302|ref|NP_800957.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153836071|ref|ZP_01988738.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AQ3810] gi|260362859|ref|ZP_05775728.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus K5030] gi|260880147|ref|ZP_05892502.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AN-5034] gi|260895264|ref|ZP_05903760.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus Peru-466] gi|260900616|ref|ZP_05909011.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AQ4037] gi|28809815|dbj|BAC62790.1| putative transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|149750825|gb|EDM61570.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AQ3810] gi|308085647|gb|EFO35342.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus Peru-466] gi|308091763|gb|EFO41458.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AN-5034] gi|308107093|gb|EFO44633.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus AQ4037] gi|308112345|gb|EFO49885.1| capsular polysaccharide regulator CpsS [Vibrio parahaemolyticus K5030] Length = 223 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE + G ++++IAE+L +S +TV +L + K+D NR+QA+ A Sbjct: 157 LTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWA 211 >gi|188491931|ref|ZP_02999201.1| regulatory protein SdiA [Escherichia coli 53638] gi|260855896|ref|YP_003229787.1| DNA-binding transcriptional activator SdiA [Escherichia coli O26:H11 str. 11368] gi|331653323|ref|ZP_08354328.1| regulatory protein SdiA [Escherichia coli M718] gi|188487130|gb|EDU62233.1| regulatory protein SdiA [Escherichia coli 53638] gi|257754545|dbj|BAI26047.1| DNA-binding transcriptional activator SdiA [Escherichia coli O26:H11 str. 11368] gi|315617861|gb|EFU98459.1| regulatory protein sdiA [Escherichia coli 3431] gi|323152751|gb|EFZ39023.1| regulatory protein sdiA [Escherichia coli EPECa14] gi|331049421|gb|EGI21493.1| regulatory protein SdiA [Escherichia coli M718] Length = 240 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|293415226|ref|ZP_06657869.1| regulatory protein sdiA [Escherichia coli B185] gi|291432874|gb|EFF05853.1| regulatory protein sdiA [Escherichia coli B185] Length = 244 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 183 NFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 242 Query: 233 YI 234 I Sbjct: 243 LI 244 >gi|238026711|ref|YP_002910942.1| acylhomoserine lactone dependent transcriptional activator [Burkholderia glumae BGR1] gi|237875905|gb|ACR28238.1| Acylhomoserine lactone dependent transcriptional activator [Burkholderia glumae BGR1] Length = 241 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 14/168 (8%) Query: 74 DDFLFHFNSGLLPIIW-QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D + H + P W ++ +++ V + S ++R E GL G F V + G + Sbjct: 72 DPVVLHAIQSVAPFSWAEAFRQQRVPDPSEFDALRREFGL--HDGYVFTVHDPYQYVGML 129 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--------ARNLTERETSCLQL 184 F + IE Q+ L LF R +A +LT RE + L+ Sbjct: 130 SFFNRGGRPEFRAEIERVKGAMQLA---LVLFHSRINAKPPDSRHRVESLTLRERTVLKW 186 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 A G + EIA+ G+ TV ++ + KLD QA+ A R G Sbjct: 187 AAMGKSYSEIADICGIRERTVKYHMANVVQKLDVSTAKQAVIVASRLG 234 >gi|225180998|ref|ZP_03734445.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225168195|gb|EEG76999.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 219 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K +S L++RE L L G+G T++EI +L LS TV ++ KL NR QA Sbjct: 142 EKAASQISGLSKREEEILHLVGEGKTNKEIGRELFLSEKTVRNHVSRILDKLGVSNRSQA 201 Query: 225 IA 226 A Sbjct: 202 AA 203 >gi|114706362|ref|ZP_01439264.1| probable transcriptional regulator protein, LuxR family [Fulvimarina pelagi HTCC2506] gi|114538223|gb|EAU41345.1| probable transcriptional regulator protein, LuxR family [Fulvimarina pelagi HTCC2506] Length = 260 Score = 38.9 bits (89), Expect = 0.62, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE S L+L G ++ +A +L ++ HTV +L KL NR +A A Sbjct: 190 TLTPRELSVLELVAQGKPNKLVANRLSITEHTVKLHLHKLMGKLHVTNRTEAAA 243 >gi|283783120|ref|YP_003373874.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|283441895|gb|ADB14361.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] Length = 261 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 38/67 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +SA LT+RE L G +++EIA+KL +S+ TV ++ K+ A +R+QA+ Sbjct: 193 NSAITELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIGARDRVQAVVF 252 Query: 228 AIRFGYI 234 A G + Sbjct: 253 AYENGLV 259 >gi|264679733|ref|YP_003279642.1| LuxR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262210248|gb|ACY34346.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni CNB-2] Length = 274 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +FK +S +LTERE L+L G +S E+A L +S TV+ ++ + K+ R Sbjct: 205 IFKHKS--FESLTEREVEILKLIAQGKSSLEVASYLQISPLTVSTHIKNIYGKMQVRTRA 262 Query: 223 QAIAKAIRFGYI 234 QA+ AI G I Sbjct: 263 QAVRCAILIGII 274 >gi|251795142|ref|YP_003009873.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542768|gb|ACS99786.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 230 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L+ G +++EIA++L + V TV ++ + KLD +R QA A + G Sbjct: 168 DLTEREMDVLKRVAQGMSNQEIADELFIGVKTVKFHITNIFNKLDVEDRTQAAIYAHKQG 227 >gi|156976379|ref|YP_001447285.1| protein-glutamate methylesterase [Vibrio harveyi ATCC BAA-1116] gi|156527973|gb|ABU73058.1| hypothetical protein VIBHAR_05152 [Vibrio harveyi ATCC BAA-1116] Length = 222 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE + G ++++IAE+L +S +TV +L + K+D NR+QA+ A Sbjct: 157 LTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWA 211 >gi|329848990|ref|ZP_08264018.1| bacterial regulatory protein, luxR family protein [Asticcacaulis biprosthecum C19] gi|328844053|gb|EGF93622.1| bacterial regulatory protein, luxR family protein [Asticcacaulis biprosthecum C19] Length = 216 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L L G T E+A+ L L TV Y+ KL+ +R +A KA++ G Sbjct: 156 LTGRETETLTLLARGLTIAEVAKALNLKPQTVAGYVKVIYQKLNVSSRAEATLKAVKRG 214 >gi|320641764|gb|EFX11152.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. G5101] Length = 240 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|297190931|ref|ZP_06908329.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] gi|297150692|gb|EFH30738.1| predicted protein [Streptomyces pristinaespiralis ATCC 25486] Length = 83 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RE LA G T+EEIA + +S T ++ A KL A +R Q + A G Sbjct: 15 NLTRREREVTALAARGLTNEEIAAHMVISPFTAKTHISRAMNKLGARDRAQLVVFAYESG 74 Query: 233 YI 234 + Sbjct: 75 LV 76 >gi|297571637|ref|YP_003697411.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum DSM 20595] gi|296931984|gb|ADH92792.1| two component transcriptional regulator, LuxR family [Arcanobacterium haemolyticum DSM 20595] Length = 207 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +LT E L+L GDG ++ EI EKLG++ TV ++ S K+ R Q A Sbjct: 139 DLTPSERKVLELIGDGLSNREIGEKLGVAEKTVKNHITSLLSKMGMQRRTQVAA 192 >gi|259419012|ref|ZP_05742929.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] gi|259345234|gb|EEW57088.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] Length = 251 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT+R+ LQ GDG T+++IA +GL+ T+ +L A L QA+ KA Sbjct: 184 RALTKRQREVLQWVGDGKTTQDIALLMGLTPATIEKHLRLARESLCVETTAQAVLKA 240 >gi|322418556|ref|YP_004197779.1| LuxR family two component transcriptional regulator [Geobacter sp. M18] gi|320124943|gb|ADW12503.1| two component transcriptional regulator, LuxR family [Geobacter sp. M18] Length = 224 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE ++L +G +S IAE L +S TV + + KLD +RI+ + A R G Sbjct: 158 LSPREQQVMRLVAEGGSSRSIAEALQVSAKTVENHRTNLMKKLDVHSRIELVRYAARLGL 217 Query: 234 I 234 I Sbjct: 218 I 218 >gi|229010418|ref|ZP_04167622.1| Sensory transduction protein ydfI [Bacillus mycoides DSM 2048] gi|229165953|ref|ZP_04293718.1| Sensory transduction protein ydfI [Bacillus cereus AH621] gi|228617506|gb|EEK74566.1| Sensory transduction protein ydfI [Bacillus cereus AH621] gi|228750838|gb|EEM00660.1| Sensory transduction protein ydfI [Bacillus mycoides DSM 2048] Length = 161 Score = 38.9 bits (89), Expect = 0.63, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 35/60 (58%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A NLT +E L+ GY ++EIA +G++ TV AYL + KL +R +A+A +I Sbjct: 95 AENNLTVKELFVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSI 154 >gi|331700341|ref|YP_004336580.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326955030|gb|AEA28727.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 221 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 8/92 (8%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +E++ G +V D + A NLT RE L+ G + IA LG+S+ Sbjct: 132 SEILGAVRGGAREVTDD--------PAPAPNLTGREHDVLRALARGLDAHRIAGDLGISL 183 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +T ++ KL A +++A+ A R G + Sbjct: 184 YTTRDHIKMLLAKLGAHTQLEAVVTAHRLGVV 215 >gi|288922222|ref|ZP_06416420.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288346413|gb|EFC80744.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 239 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LT RE L+L +G + EIA KL +S +TV ++ + KL +R++A+ A+R Sbjct: 173 APHLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVR 232 Query: 231 FG 232 G Sbjct: 233 QG 234 >gi|282864907|ref|ZP_06273961.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560332|gb|EFB65880.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 240 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 27/51 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L ERE G G ++ EIA L LSV TV A++ +LD NR+Q Sbjct: 168 ELAEREQDVATAVGRGASNAEIAAALHLSVATVKAHVSRVLARLDLNNRVQ 218 >gi|239940109|ref|ZP_04692046.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239986597|ref|ZP_04707261.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291443540|ref|ZP_06582930.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346487|gb|EFE73391.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 223 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LT+RE L+L G ++ EIA +L +S TV ++G KL +R+QA Sbjct: 152 PDALHTLTDREVEVLKLVARGLSNAEIAAELFVSETTVKTHVGHVLTKLGLRDRVQAAVY 211 Query: 228 AIRFGYI 234 A G + Sbjct: 212 AYESGLV 218 >gi|148990003|ref|ZP_01821278.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|182684936|ref|YP_001836683.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|225855491|ref|YP_002737003.1| response regulator [Streptococcus pneumoniae JJA] gi|303254075|ref|ZP_07340190.1| DNA-binding response regulator [Streptococcus pneumoniae BS455] gi|303260376|ref|ZP_07346346.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|303262524|ref|ZP_07348466.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|303265155|ref|ZP_07351068.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|303265983|ref|ZP_07351878.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|303268085|ref|ZP_07353886.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|147924663|gb|EDK75749.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|182630270|gb|ACB91218.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|225723110|gb|ACO18963.1| response regulator [Streptococcus pneumoniae JJA] gi|301802678|emb|CBW35444.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302598908|gb|EFL65939.1| DNA-binding response regulator [Streptococcus pneumoniae BS455] gi|302636424|gb|EFL66917.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|302638542|gb|EFL69007.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|302642445|gb|EFL72791.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|302644424|gb|EFL74676.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|302645372|gb|EFL75606.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] Length = 199 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G +++EIA++L LS T+ Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|54023878|ref|YP_118120.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54015386|dbj|BAD56756.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 207 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 7/108 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITD-FLELFKKRSSAAR----NLTERETSCLQ 183 +GYV+ + + LA I+A GA ++ + E + R A +LTE+E L Sbjct: 99 SGYVVKDIKGMELAEA--IKAVGAGRSLLDNRAAETLEARLRGAEGPLADLTEQERKLLA 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G+G T+ +IA ++ L+ TV Y+ KL R QA A R Sbjct: 157 LLGEGLTNRQIAARMFLAEKTVKNYVSRLLAKLGMERRTQAAVLATRL 204 >gi|315081981|gb|EFT53957.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] Length = 206 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+LA G + IA +L LSV TV ++ SA K A NR +A A R G+ Sbjct: 146 LSGREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGW 205 Query: 234 I 234 + Sbjct: 206 L 206 >gi|299536275|ref|ZP_07049588.1| LysR-family transcriptional regulator [Lysinibacillus fusiformis ZC1] gi|298728261|gb|EFI68823.1| LysR-family transcriptional regulator [Lysinibacillus fusiformis ZC1] Length = 243 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 33/58 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +T+RE L+ G + EIA++L +S +T+ +L + K NR Q +AK +++ Sbjct: 182 MTDREREVLKFVFKGLKNIEIAKQLFVSENTIKKHLQNLYRKFQVTNRTQLLAKCLKY 239 >gi|255263647|ref|ZP_05342989.1| positive regulator AgmR [Thalassiobium sp. R2A62] gi|255105982|gb|EET48656.1| positive regulator AgmR [Thalassiobium sp. R2A62] Length = 204 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 141 LANEVIIEAHGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 L N V A G Y + DF+ E + A+NLT+RE L+ G +++EIA L Sbjct: 110 LVNAVKFMAMGEQYAPL-DFMTAEEEPETHELAKNLTQRELQVLEGLTQGKSNKEIARDL 168 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQA 224 + TV ++ + KL+A NR QA Sbjct: 169 EIQEPTVKLHMKTLYRKLEASNRTQA 194 >gi|239944642|ref|ZP_04696579.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239991106|ref|ZP_04711770.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291448106|ref|ZP_06587496.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291351053|gb|EFE77957.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 222 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 9/116 (7%) Query: 129 NGYVIFTSEF--LMLANEVIIEAHGACYQVITDFL--ELFKKRSSAA-----RNLTERET 179 +G+++ + F L+ A V+ H IT L E ++R SA LT RE Sbjct: 101 SGFLLKDATFPELLHAVRVVAGGHALLAPEITGRLIAEFARQRVSAPPKRSIEGLTAREA 160 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L G ++ +IA++L ++ HTV ++ K+ +R QA+ A G + Sbjct: 161 EVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYELGLVV 216 >gi|239931733|ref|ZP_04688686.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440102|ref|ZP_06579492.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342997|gb|EFE69953.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 228 Score = 38.9 bits (89), Expect = 0.64, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Query: 173 NLTERETSCL-QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE L Q+AG G++++EIAE+L +S TV ++ A KL A +R Q + A Sbjct: 162 SLTVREREVLVQVAG-GHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYES 220 Query: 232 GYI 234 G + Sbjct: 221 GLV 223 >gi|325293769|ref|YP_004279633.1| two-component response regulator protein [Agrobacterium sp. H13-3] gi|325061622|gb|ADY65313.1| putative two-component response regulator protein [Agrobacterium sp. H13-3] Length = 309 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE+ L G ++ +I + LGLS TVN +L VKL NR A KA Sbjct: 248 LTTRESEVLLWIAKGKSNRDIGDILGLSARTVNKHLEQIYVKLGVENRASAAVKA 302 >gi|320652407|gb|EFX20705.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H- str. H 2687] Length = 240 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 179 NFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|302130812|ref|ZP_07256802.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 222 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S++ LTERE L+ G T+++IA+ L LS TVN +L VKL R A + Sbjct: 154 RLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAATS 213 Query: 227 KAI 229 A+ Sbjct: 214 VAL 216 >gi|295108610|emb|CBL22563.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Ruminococcus obeum A2-162] Length = 206 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 23/54 (42%), Positives = 31/54 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 AA + ERE ++L DG +++EIA +L LS TV YL S KL +R Q Sbjct: 144 AAHGINEREKEIIRLIADGNSNKEIAAELYLSEGTVRNYLSSILNKLQLRDRTQ 197 >gi|258650664|ref|YP_003199820.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553889|gb|ACV76831.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 191 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 GA +IT++L + + LT RE ++L +G++S EIA+ L +S TV+ + Sbjct: 105 GALTALITEYLRRSRNGDRIPTSILTPREEEIVKLIAEGHSSREIADTLVISAKTVDRHR 164 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL +R+ AIR G + Sbjct: 165 ANIMQKLGMHDRLDLTRFAIRVGLV 189 >gi|256751167|ref|ZP_05492048.1| transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus CCSD1] gi|256749892|gb|EEU62915.1| transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus CCSD1] Length = 260 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 2/107 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGD 187 GYV ++ +A+EV + ++ ++ ++ K++ + L + + L L Sbjct: 151 GYVDISTIDKKIADEVSMVIKLLAEKIAVEYEKILKEKEINDIKIKLNDSQIKILALEAK 210 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY +IAE LG+ V TV + KL N +A+ KAI+ G + Sbjct: 211 GYRELDIAEALGIEVVTVKYHKRKIVEKLGVKNIKEAVIKAIKLGLV 257 >gi|226948658|ref|YP_002803749.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A2 str. Kyoto] gi|226842846|gb|ACO85512.1| DNA-binding response regulator, LuxR family [Clostridium botulinum A2 str. Kyoto] Length = 217 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 20/115 (17%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--------VITDFL-------ELFKKRS 168 L F +GY++ S +NE+I E AC + V + + EL Sbjct: 96 LKFGASGYLLKDS-----SNELIYEGIKACVKGNIVVHPDVANNIILNTTYEKELNDDDI 150 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S NLTERE + ++ +G +++EIAE++ LS T+ + + KLD +R Q Sbjct: 151 SLKYNLTEREINIIRQIANGLSNKEIAEEIYLSEGTIKNNISTILSKLDLRDRTQ 205 >gi|119898377|ref|YP_933590.1| putative transcriptional activator protein [Azoarcus sp. BH72] gi|119670790|emb|CAL94703.1| putative transcriptional activator protein [Azoarcus sp. BH72] Length = 251 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L DG T+++I E L +S TV ++ KL A NR QA+A + G Sbjct: 183 LSGRELQVLGCMRDGLTNQQIGEVLEISALTVKNHVQRILRKLRAANRAQAVANGVAAGL 242 Query: 234 I 234 I Sbjct: 243 I 243 >gi|72162890|ref|YP_290547.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71916622|gb|AAZ56524.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 242 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%) Query: 155 QVITDFLELFKK----RSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++I +F L +K RS + LTERET L+L G + +IA++L +S +TV + Sbjct: 142 KLINEFAALARKGKDRRSQPTKPPRLTERETEVLRLVARGLNNRDIADRLYISDNTVKNH 201 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL +R +A AIR ++ Sbjct: 202 VRNILEKLQLHSRTEAAVYAIREKFL 227 >gi|332968686|gb|EGK07738.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 215 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G +++EIA L ++ TV ++ KLD +R QA A++ G+ Sbjct: 154 LTPREQEVLRLITEGMSNKEIAANLVIAEKTVKTHVSGILNKLDLQDRTQAAIHAMKQGW 213 >gi|4096799|gb|AAD10462.1| orfx; function unknown; similar to response regulators of two-component regulatory systems; Method: conceptual translation supplied by author [Staphylococcus carnosus] Length = 185 Score = 38.9 bits (89), Expect = 0.65, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 R L++RE L L GY ++EIAEKL +SV TV A+ KL+ ++ + + A++ Sbjct: 121 RILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYALK 179 >gi|326777702|ref|ZP_08236967.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326658035|gb|EGE42881.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 226 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE L G G ++ EIA +L L TV A++ + KL A NR++A Sbjct: 160 RLTEREREVLAGLGAGLSNAEIASRLHLVEGTVKAHVSAVLAKLGARNRVEA 211 >gi|198275756|ref|ZP_03208287.1| hypothetical protein BACPLE_01931 [Bacteroides plebeius DSM 17135] gi|198271385|gb|EDY95655.1| hypothetical protein BACPLE_01931 [Bacteroides plebeius DSM 17135] Length = 262 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A+ L++RE L+L G S+EIA +L +SVHTV+ + KL + I+A A Sbjct: 199 AQILSDREKQILRLIDKGLMSKEIASQLSISVHTVSRHRQEILGKLQVKSSIEACRVAKE 258 Query: 231 FG 232 G Sbjct: 259 LG 260 >gi|168700050|ref|ZP_02732327.1| two-component transcriptional regulator, LuxR family protein [Gemmata obscuriglobus UQM 2246] Length = 219 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE +L G+ ++EIA +L LSV TV Y A KL +R + ++ A + G Sbjct: 155 ELSEREAEVARLTAAGHGNKEIAARLELSVKTVETYRARALEKLGLKSRAELVSYAFQQG 214 Query: 233 YI 234 ++ Sbjct: 215 WL 216 >gi|43288|emb|CAA27327.1| unnamed protein product [Escherichia coli] Length = 241 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 180 NFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 239 Query: 233 YI 234 I Sbjct: 240 LI 241 >gi|29830918|ref|NP_825552.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608031|dbj|BAC72087.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 219 Score = 38.9 bits (89), Expect = 0.66, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT++E L L G+G T+ EI E+L L+ T+ Y+ S KL R QA A R Sbjct: 156 HLTDQERRILDLIGEGLTNREIGERLHLAEKTIKNYVSSLLSKLGMQRRSQAAAYVARI 214 >gi|315302505|ref|ZP_07873346.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596] gi|313629123|gb|EFR97415.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596] Length = 212 Score = 38.5 bits (88), Expect = 0.66, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LT RE L L +G +++EIA++L +++ TV ++ + KLD +R QA Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQA 199 >gi|297203477|ref|ZP_06920874.1| two-component system regulatory protein [Streptomyces sviceus ATCC 29083] gi|297148424|gb|EFH28981.1| two-component system regulatory protein [Streptomyces sviceus ATCC 29083] Length = 220 Score = 38.5 bits (88), Expect = 0.66, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 2/82 (2%) Query: 156 VITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +I +F RS+A LT RE LA G T+EEIAE + +S T ++ A Sbjct: 135 LIGEFASRPPDRSTAPGLECLTRREREVTALAARGLTNEEIAEHMVISPLTAKTHISRAM 194 Query: 214 VKLDAVNRIQAIAKAIRFGYIC 235 KL A +R Q + A G + Sbjct: 195 TKLGARDRAQLVVFAYESGLVT 216 >gi|289434290|ref|YP_003464162.1| DNA-binding response regulator, LuxR family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170534|emb|CBH27074.1| DNA-binding response regulator, LuxR family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633930|gb|EFS00643.1| sensory transduction protein LiaR [Listeria seeligeri FSL N1-067] gi|313638502|gb|EFS03673.1| sensory transduction protein LiaR [Listeria seeligeri FSL S4-171] Length = 212 Score = 38.5 bits (88), Expect = 0.66, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L +G +++EIA++L +++ TV ++ + KLD +R QA A + Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 207 Query: 233 YI 234 + Sbjct: 208 LV 209 >gi|124265956|ref|YP_001019960.1| ATP-dependent transcriptional regulator-like protein [Methylibium petroleiphilum PM1] gi|124258731|gb|ABM93725.1| ATP-dependent transcriptional regulator-like protein protein [Methylibium petroleiphilum PM1] Length = 919 Score = 38.5 bits (88), Expect = 0.66, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 31/53 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ RE + L +G +++ IA LGLS+HTV ++ + KL +R QA A Sbjct: 862 LSAREREVMALLAEGQSNKLIARALGLSLHTVKRHVANILTKLALDSRTQAAA 914 >gi|116694572|ref|YP_728783.1| response regulator [Ralstonia eutropha H16] gi|113529071|emb|CAJ95418.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 235 Score = 38.5 bits (88), Expect = 0.66, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ +R A L+ RE L L G G T+ EIA+ L LS TV ++ + KL +R Sbjct: 162 QIHARRLVGASPLSAREIEILSLVGKGLTNREIADLLSLSRLTVECHIRNIYKKLAVHSR 221 Query: 222 IQAIAKAIRFGYI 234 QA+ +A G + Sbjct: 222 TQAVFEARAHGLL 234 >gi|11467616|ref|NP_050668.1| tctD homolog [Guillardia theta] gi|6136612|sp|O78417|YCF29_GUITH RecName: Full=Probable transcriptional regulator ycf29 gi|3602941|gb|AAC35602.1| tctD homolog [Guillardia theta] Length = 208 Score = 38.5 bits (88), Expect = 0.66, Method: Compositional matrix adjust. Identities = 18/63 (28%), Positives = 35/63 (55%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +++ S + NLT +E + DG T+++I+ +G++ +V Y+ KL NRIQ Sbjct: 143 YRETSFSYINLTVKEKEVFKFIQDGLTNKQISNVMGITQRSVEKYVTKIFEKLKIQNRIQ 202 Query: 224 AIA 226 ++ Sbjct: 203 ILS 205 >gi|16803062|ref|NP_464547.1| hypothetical protein lmo1022 [Listeria monocytogenes EGD-e] gi|46907254|ref|YP_013643.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47096354|ref|ZP_00233950.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|217964878|ref|YP_002350556.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|224500732|ref|ZP_03669081.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes Finland 1988] gi|224502663|ref|ZP_03670970.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes FSL R2-561] gi|226223640|ref|YP_002757747.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254823705|ref|ZP_05228706.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254832231|ref|ZP_05236886.1| two-component response regulator [Listeria monocytogenes 10403S] gi|254852518|ref|ZP_05241866.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|254898804|ref|ZP_05258728.1| two-component response regulator [Listeria monocytogenes J0161] gi|254911707|ref|ZP_05261719.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254931406|ref|ZP_05264765.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|254936033|ref|ZP_05267730.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|255520598|ref|ZP_05387835.1| two-component response regulator [Listeria monocytogenes FSL J1-175] gi|290893828|ref|ZP_06556807.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|300764232|ref|ZP_07074227.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|315281752|ref|ZP_07870312.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120] gi|16410424|emb|CAC99100.1| lmo1022 [Listeria monocytogenes EGD-e] gi|46880521|gb|AAT03820.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47015312|gb|EAL06249.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|217334148|gb|ACK39942.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|225876102|emb|CAS04808.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605826|gb|EEW18434.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|258608621|gb|EEW21229.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|290556655|gb|EFD90190.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|293582956|gb|EFF94988.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|293589656|gb|EFF97990.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|293592927|gb|EFG00688.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|300515222|gb|EFK42274.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|307570563|emb|CAR83742.1| DNA-binding response regulator, LuxR family [Listeria monocytogenes L99] gi|313614594|gb|EFR88178.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120] gi|328466914|gb|EGF38023.1| two-component response regulator [Listeria monocytogenes 1816] gi|328475371|gb|EGF46144.1| two-component response regulator [Listeria monocytogenes 220] gi|332311431|gb|EGJ24526.1| Transcriptional regulatory protein [Listeria monocytogenes str. Scott A] Length = 212 Score = 38.5 bits (88), Expect = 0.66, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L +G +++EIA++L +++ TV ++ + KLD +R QA A + Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 207 Query: 233 YI 234 + Sbjct: 208 LV 209 >gi|261369119|ref|ZP_05982002.1| putative two-component response regulator [Subdoligranulum variabile DSM 15176] gi|282568732|gb|EFB74267.1| putative two-component response regulator [Subdoligranulum variabile DSM 15176] Length = 199 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 18/73 (24%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 DF + FK L++++ + L+L DGYT EEIA++LG H SA VK Sbjct: 133 DFCQRFKA------TLSQKDMAILELRVDGYTLEEIADRLGYKTH-------SAVVK--- 176 Query: 219 VNRIQAIAKAIRF 231 R++AI K R Sbjct: 177 --RMEAIPKEGRL 187 >gi|312194246|ref|YP_004014307.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311225582|gb|ADP78437.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 245 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G ++ EIA +L LS TV ++G KL+ +R+QA+ A G Sbjct: 173 RLTDRERDVLGEVAAGLSNAEIAARLVLSEATVKTHVGRILAKLELRDRVQAVVFAYETG 232 Query: 233 YI 234 I Sbjct: 233 LI 234 >gi|302561047|ref|ZP_07313389.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302478665|gb|EFL41758.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 227 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Query: 173 NLTERETSCL-QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE L Q+AG G++++EIAE+L +S TV ++ A KL A +R Q + A Sbjct: 161 SLTVREREVLVQVAG-GHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTAYES 219 Query: 232 GYI 234 G + Sbjct: 220 GLV 222 >gi|229488970|ref|ZP_04382836.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229324474|gb|EEN90229.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 209 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L+ A DG IA L LS TV +L SA K A R +A+ A G+ Sbjct: 149 LTERETQVLRAAHDGAPVAAIAGALFLSAGTVRNHLSSAMGKTGASTRAEAVRIAESNGW 208 Query: 234 I 234 + Sbjct: 209 L 209 >gi|229131918|ref|ZP_04260783.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196] gi|228651509|gb|EEL07479.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196] Length = 207 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A NLT++E L+ GY ++EIA +G++ TV A+L + KL +R +A+A +I Sbjct: 141 AENNLTDKELFVLKAIARGYKNKEIAFDMGIAERTVKAHLTNIYNKLGVNSRSEAVAVSI 200 >gi|226364089|ref|YP_002781871.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226242578|dbj|BAH52926.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 394 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ LT RE QL G ++ EIA++L +SV TV +++ KL A+NR +AI Sbjct: 319 RAPGLEELTMREREVFQLLAAGKSNTEIADELVISVFTVKSHVKKILRKLGAMNRSEAI 377 >gi|223938390|ref|ZP_03630284.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223892959|gb|EEF59426.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 234 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S ++ LT RET L + +G +++E+A ++G+ V TV + KLD N Sbjct: 164 SGNSKKLTNRETEVLSMIAEGQSNKEMASRMGVGVRTVETHRERVMNKLDIHNVAGLTKY 223 Query: 228 AIRFGYI 234 AI G I Sbjct: 224 AIAHGII 230 >gi|183601417|ref|ZP_02962787.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|241191083|ref|YP_002968477.1| putative response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196489|ref|YP_002970044.1| putative response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219023|gb|EDT89664.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|240249475|gb|ACS46415.1| Putative response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251043|gb|ACS47982.1| Putative response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794072|gb|ADG33607.1| Putative response regulator [Bifidobacterium animalis subsp. lactis V9] Length = 226 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 33/53 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ Sbjct: 165 TLTEREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILQKINARDRVQAV 217 >gi|15889689|ref|NP_355370.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157595|gb|AAK88155.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 309 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE+ L G ++ +I + LGLS TVN +L VKL NR A KA Sbjct: 248 LTTRESEVLLWIAKGKSNRDIGDILGLSARTVNKHLEQIYVKLGVENRASAAVKA 302 >gi|54026224|ref|YP_120466.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54017732|dbj|BAD59102.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 220 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARN------ 173 L +G+++ +E L+ A V+ E +T L E+ +R+++ + Sbjct: 97 LSIGASGFLLKDAPAEELVRAVRVVAEGQALLAPTVTRRLIAEVTSRRAASRKPAPELAA 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIAE L ++ TV ++ KL+ +R QA+ A G Sbjct: 157 LTPREREVLELVARGMSNTEIAEALFVAEQTVKTHVSKVFSKLNLRDRAQAVVLAYESGL 216 Query: 234 IC 235 + Sbjct: 217 VT 218 >gi|116054260|ref|YP_788704.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|254243626|ref|ZP_04936948.1| hypothetical protein PA2G_04451 [Pseudomonas aeruginosa 2192] gi|115589481|gb|ABJ15496.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa UCBPP-PA14] gi|126197004|gb|EAZ61067.1| hypothetical protein PA2G_04451 [Pseudomonas aeruginosa 2192] Length = 496 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA++LGL+ +TV ++ + KLD +R +AI A G Sbjct: 425 DLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 484 Query: 233 Y 233 + Sbjct: 485 F 485 >gi|327330300|gb|EGE72049.1| nitrate/nitrite response regulator protein NarL [Propionibacterium acnes HL097PA1] Length = 210 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +LT RE L+ + G ++ +IAE L +S TV +L KL +R Sbjct: 138 LMARMRSPRTSLTARELDVLEASAQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRS 197 Query: 223 QAIAKAIRFGYI 234 A+AKA G+I Sbjct: 198 AAVAKARDIGFI 209 >gi|300782049|ref|YP_003762340.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299791563|gb|ADJ41938.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 222 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 3/99 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERETSCLQLAGDGYTSEEIAE 196 ++AN + A ++I +F+ + R +SA R +T+RE L L G +++EIA Sbjct: 119 VVANGEALLAPTVTRRLIQEFVGRPENRRIDTSAVREITDREREVLGLVAGGMSNDEIAA 178 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L +S T ++ K+ A +R Q + A G + Sbjct: 179 HLVISTATARTHVSRIMTKIGARDRAQLVVLAYESGLVT 217 >gi|255038247|ref|YP_003088868.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254951003|gb|ACT95703.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 205 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L +G T+ +IAE+L +SV TVN++ + +K + N I A G Sbjct: 145 LTRREKEVLVLIAEGLTNPQIAEQLFISVTTVNSHRQNLLIKFEVSNTASLIKLAAGLGL 204 Query: 234 I 234 I Sbjct: 205 I 205 >gi|111017210|ref|YP_700182.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110816740|gb|ABG92024.1| probable transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 287 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE+ L G + EIA++L LSV TV +Y+ + KL+ +R +A+ +A R G Sbjct: 225 TLSRRESDVLAHVALGCRNAEIADRLSLSVETVKSYMRNLMGKLEVRSRQEAVVEARRQG 284 Query: 233 YI 234 + Sbjct: 285 LL 286 >gi|152987214|ref|YP_001346031.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150962372|gb|ABR84397.1| transcriptional regulator, LuxR family [Pseudomonas aeruginosa PA7] Length = 496 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA++LGL+ +TV ++ + KLD +R +AI A G Sbjct: 425 DLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 484 Query: 233 Y 233 + Sbjct: 485 F 485 >gi|117927404|ref|YP_871955.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117647867|gb|ABK51969.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 205 Score = 38.5 bits (88), Expect = 0.67, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L A G T +IA +L LS TV YL +A K A NRI+A+ A G+ Sbjct: 145 LTAREQEVLAAARGGATIADIAGRLFLSEGTVRNYLSAAIAKTGARNRIEALRVAEENGW 204 Query: 234 I 234 + Sbjct: 205 L 205 >gi|320333728|ref|YP_004170439.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755017|gb|ADV66774.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 210 Score = 38.5 bits (88), Expect = 0.68, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 7/82 (8%) Query: 152 ACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A +++ DF RS R +LT +E LQL G+ + EIA++LG++ TV ++ Sbjct: 130 AARRLVRDF------RSPDMREHLTPKEVLTLQLIARGHANREIAQELGITEATVKTHVS 183 Query: 211 SATVKLDAVNRIQAIAKAIRFG 232 KL +R QA A++ G Sbjct: 184 RLLGKLGLTSRTQAALYALKAG 205 >gi|299533898|ref|ZP_07047264.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|298718125|gb|EFI59116.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 223 Score = 38.5 bits (88), Expect = 0.68, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+L GY+S EI+ +L +S TV+ ++ + KL A R A+ A G Sbjct: 162 KLSEREIEILKLIACGYSSPEISTQLKISTLTVSTHVKNMYRKLQAKTRAHAVKAASLRG 221 Query: 233 YI 234 I Sbjct: 222 LI 223 >gi|302866185|ref|YP_003834822.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315502743|ref|YP_004081630.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302569044|gb|ADL45246.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315409362|gb|ADU07479.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 212 Score = 38.5 bits (88), Expect = 0.68, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 32/60 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++LTE+E L+ +G T+ EIA K+ L+ TV Y+ S KL R QA A R Sbjct: 148 KSLTEQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSVLAKLGLERRTQAAVLATRL 207 >gi|239813946|ref|YP_002942856.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239800523|gb|ACS17590.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 247 Score = 38.5 bits (88), Expect = 0.68, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 37/68 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++A L+ RE L L G++ EIA GLSVHTV ++ + KL ++ +A+ + Sbjct: 177 TTAPSLLSAREHEVLTLIARGFSYAEIARLKGLSVHTVQTHIKNLYGKLAVHSKSEAVFE 236 Query: 228 AIRFGYIC 235 A R G + Sbjct: 237 ATRLGLLS 244 >gi|219683473|ref|YP_002469856.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|219621123|gb|ACL29280.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|289178826|gb|ADC86072.1| Two-component response regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 234 Score = 38.5 bits (88), Expect = 0.68, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 33/53 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ Sbjct: 173 TLTEREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILQKINARDRVQAV 225 >gi|254227764|ref|ZP_04921195.1| HTH DNA binding domain family [Vibrio sp. Ex25] gi|262395807|ref|YP_003287660.1| nitrate/nitrite response regulator protein [Vibrio sp. Ex25] gi|151939806|gb|EDN58633.1| HTH DNA binding domain family [Vibrio sp. Ex25] gi|262339401|gb|ACY53195.1| nitrate/nitrite response regulator protein [Vibrio sp. Ex25] Length = 210 Score = 38.5 bits (88), Expect = 0.68, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 61/123 (49%), Gaps = 7/123 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAAR 172 A I VR G +GY++ +E L E++ +AH A Q ++ +L + Sbjct: 90 ADIEAIVRSG--ADGYLLKDTEPDELV-ELLKQAHQGDKAYSQEVSKYLSERSGQEDVFD 146 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-RF 231 LT+RET L+ G+ +++IA++L +S TV ++ S KL +R A + RF Sbjct: 147 TLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERF 206 Query: 232 GYI 234 G I Sbjct: 207 GDI 209 >gi|87309494|ref|ZP_01091629.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] gi|87287802|gb|EAQ79701.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] Length = 210 Score = 38.5 bits (88), Expect = 0.68, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 8/123 (6%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC------YQVITDFLELFKKRSSAA 171 +A V LG NGYV+ L + + A+G + +T L + + Sbjct: 90 VARAVALG--ANGYVLKGDPRDRLVDAIHTAANGESAWTRDELRRVTGALATPRLNADVE 147 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE+ L+ G T++EIA+ L +S TV ++ K+ +R QA A+R Sbjct: 148 VPLTQRESEVLRQLALGLTNKEIAQALHISYETVKEHVQHILRKVGVSDRTQAAVWAVRK 207 Query: 232 GYI 234 G + Sbjct: 208 GLV 210 >gi|318061538|ref|ZP_07980259.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318076628|ref|ZP_07983960.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 219 Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L L G ++ IAE+LGLS TV AY+ +L NR++A Sbjct: 154 LTPREREVLVLLAGGLSNAGIAERLGLSEGTVKAYVSVVLDRLGVPNRVRA 204 >gi|297563606|ref|YP_003682580.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848054|gb|ADH70074.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 252 Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE + L G ++ EIA LGLS T+ +++ S K NR+Q + A R G + Sbjct: 184 TDREKDVVALVATGASNAEIAGVLGLSETTIKSHVSSVLAKRGLRNRVQLVVWAFRSGLV 243 >gi|226225820|ref|YP_002759926.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226089011|dbj|BAH37456.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 213 Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE LQL +G T+ +AE L +S HT + + KL+ N+++ + A G Sbjct: 146 SLTAREREVLQLIANGLTTSAVAEALNISPHTATRHRANLMQKLNVHNQVELVRIAASQG 205 Query: 233 YIC 235 I Sbjct: 206 LIV 208 >gi|153831737|ref|ZP_01984404.1| probable csgAB operon transcriptional regulatory protein [Vibrio harveyi HY01] gi|148872247|gb|EDL71064.1| probable csgAB operon transcriptional regulatory protein [Vibrio harveyi HY01] Length = 222 Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE + G ++++IAE+L +S +TV +L + K+D NR+QA+ A Sbjct: 157 LTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWA 211 >gi|8217387|emb|CAB92554.1| SmaR protein [Serratia sp. ATCC 39006] Length = 247 Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 2/81 (2%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 YQ I D + KK L++RE L A G + +EIA LG+ + TV ++G+A Sbjct: 161 YQEINDTHQFNKKNQKEI--LSKRENEILYWASMGKSYQEIALILGIKLTTVKYHVGNAV 218 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL N AI + I Sbjct: 219 KKLGVTNAKHAIRLGVELKLI 239 >gi|15595730|ref|NP_249224.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107099520|ref|ZP_01363438.1| hypothetical protein PaerPA_01000532 [Pseudomonas aeruginosa PACS2] gi|218889274|ref|YP_002438138.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|296387037|ref|ZP_06876536.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313111834|ref|ZP_07797627.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa 39016] gi|9946400|gb|AAG03922.1|AE004490_2 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|218769497|emb|CAW25257.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|310884129|gb|EFQ42723.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa 39016] Length = 496 Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA++LGL+ +TV ++ + KLD +R +AI A G Sbjct: 425 DLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 484 Query: 233 Y 233 + Sbjct: 485 F 485 >gi|312141833|ref|YP_004009169.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311891172|emb|CBH50491.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 866 Score = 38.5 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + L G ++ EIA L +S +TV + L + K+DA +R +A+ A R G Sbjct: 805 LTERERAVLAELARGLSTLEIARTLFVSTNTVKSQLRTLYRKIDAHSRDEALEIAYRTGL 864 Query: 234 I 234 I Sbjct: 865 I 865 >gi|325674370|ref|ZP_08154059.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325555050|gb|EGD24723.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 780 Score = 38.5 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT+RE +L +G T++EIA++L +S TV+ ++ KL +R+Q Sbjct: 719 LTKREHEVAELVAEGLTNKEIAQRLTISRRTVDGHVDHILTKLGFTSRVQ 768 >gi|325672904|ref|ZP_08152598.1| exopolyphosphatase [Rhodococcus equi ATCC 33707] gi|325556157|gb|EGD25825.1| exopolyphosphatase [Rhodococcus equi ATCC 33707] Length = 854 Score = 38.5 bits (88), Expect = 0.69, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + L G ++ EIA L +S +TV + L + K+DA +R +A+ A R G Sbjct: 793 LTERERAVLAELARGLSTLEIARTLFVSTNTVKSQLRTLYRKIDAHSRDEALEIAYRTGL 852 Query: 234 I 234 I Sbjct: 853 I 853 >gi|281491392|ref|YP_003353372.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|281375126|gb|ADA64642.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] Length = 209 Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 8/116 (6%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-----ELFKKRSSAARNL 174 FP L GY++ TS+ +A+ + A+G V++D + + ++ +L Sbjct: 93 FPA-LAAGAKGYILKTSQAADIASAIRKVANGE--DVLSDAVKEKIAQQKHRKHELYDDL 149 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++RE L++ G +++EIA++L +S+ TV ++ + KL+ +R QA AI+ Sbjct: 150 SKRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQ 205 >gi|302524582|ref|ZP_07276924.1| two component system response regulator [Streptomyces sp. AA4] gi|302433477|gb|EFL05293.1| two component system response regulator [Streptomyces sp. AA4] Length = 215 Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust. Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 LG +G+++ + L V A GA + +VIT R++ AR Sbjct: 94 LGLGASGFLLKAGDPRELLAGVHAVADGAAFLSPKVAHRVITRLSGNRFSRAATARERVS 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G ++ +IA ++ + TV A++ + +LD NR+QA A G Sbjct: 154 VLTNREREVLVLLAEGLSNADIAARMFVVEGTVKAHVSTILTRLDVRNRVQAAITAFEAG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|255320985|ref|ZP_05362158.1| response regulator UvrY [Acinetobacter radioresistens SK82] gi|262379925|ref|ZP_06073080.1| response regulator [Acinetobacter radioresistens SH164] gi|255301949|gb|EET81193.1| response regulator UvrY [Acinetobacter radioresistens SK82] gi|262298119|gb|EEY86033.1| response regulator [Acinetobacter radioresistens SH164] Length = 211 Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + + +++EIA+KL +SV TVN Y KLD + ++ AIR+G Sbjct: 149 LSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLDIDSDVKLTHLAIRYGL 208 Query: 234 I 234 I Sbjct: 209 I 209 >gi|194446637|ref|YP_002042854.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194405300|gb|ACF65522.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 200 Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D+L + S + L+ R+ LQ+ G ++++I L +S TV A+L S +LD Sbjct: 127 DWLNSTELESRDIKALSARQREILQMLAAGESNKQIGRALNISTGTVKAHLESLYRRLDV 186 Query: 219 VNRIQA 224 NR QA Sbjct: 187 KNRTQA 192 >gi|116872424|ref|YP_849205.1| LuxR family DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741302|emb|CAK20424.1| DNA-binding response regulator; LuxR family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 212 Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LT RE L L +G +++EIA++L +++ TV ++ + KLD +R QA Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQA 199 >gi|56962819|ref|YP_174545.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909057|dbj|BAD63584.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 210 Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 28/50 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L ERE ++L G G + EIA +L LSV TV Y+ +KL +R Q Sbjct: 151 LAEREKEIIRLVGQGRNNAEIAAELYLSVGTVKNYISQLFIKLGVRDRTQ 200 >gi|16800090|ref|NP_470358.1| hypothetical protein lin1021 [Listeria innocua Clip11262] gi|16413480|emb|CAC96252.1| lin1021 [Listeria innocua Clip11262] gi|313609539|gb|EFR85084.1| sensory transduction protein LiaR [Listeria monocytogenes FSL F2-208] gi|313619559|gb|EFR91226.1| sensory transduction protein LiaR [Listeria innocua FSL S4-378] Length = 212 Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L +G +++EIA++L +++ TV ++ + KLD +R QA A + Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 207 Query: 233 YI 234 + Sbjct: 208 LV 209 >gi|89100435|ref|ZP_01173298.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89084864|gb|EAR64002.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 214 Score = 38.5 bits (88), Expect = 0.69, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%) Query: 155 QVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +V T + + R LTERE L G+G T++EI+ +L + + TV ++ + Sbjct: 128 KVATKMMGRLRGREKKPHEELTERELEVLLCIGEGMTNQEISNQLFIGIKTVKTHVSNIL 187 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL +R QA A + G I Sbjct: 188 SKLSVSDRTQAAVYAHQNGLI 208 >gi|313624283|gb|EFR94330.1| sensory transduction protein LiaR [Listeria innocua FSL J1-023] Length = 212 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LT RE L L +G +++EIA++L +++ TV ++ + KLD +R QA Sbjct: 148 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQA 199 >gi|289645062|ref|ZP_06477093.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289505136|gb|EFD26204.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 216 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 7/114 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA----ARNLTERETSC 181 +G+V+ +E L + + A G V ++ F +R + LT RE Sbjct: 101 SGFVLKDAEPAELLRAIRVVAAGESLLSPTVTRRVIDAFARRPAVHTPDLSGLTAREREV 160 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + L G G +++EIA++L +S T ++ VKL A +R Q A + G + Sbjct: 161 MGLVGRGLSNDEIAQRLFISPATARTHVSRVMVKLGARDRAQLAVLANQAGMVT 214 >gi|255012345|ref|ZP_05284471.1| transcriptional regulator [Bacteroides sp. 2_1_7] gi|298374802|ref|ZP_06984760.1| LuxR family transcriptional regulator [Bacteroides sp. 3_1_19] gi|298269170|gb|EFI10825.1| LuxR family transcriptional regulator [Bacteroides sp. 3_1_19] Length = 193 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 156 VITDFLELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +I +LF SS ++L+ RE LQL G T++EIA+KL +S++TV + Sbjct: 102 IIEQLQQLFTSDSSGNTTTENNKDLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHR 161 Query: 210 GSATVKL 216 + T KL Sbjct: 162 KNITAKL 168 >gi|297560768|ref|YP_003679742.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845216|gb|ADH67236.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 201 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 30/67 (44%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ L+ RE L LA DG EEIA ++ LS TV YL +A KLDA NR +A Sbjct: 135 SAGDSPLSPREADVLALARDGAPVEEIARRVSLSRGTVRNYLAAAVAKLDAANRHEAAHI 194 Query: 228 AIRFGYI 234 A G+I Sbjct: 195 AAEHGWI 201 >gi|198245542|ref|YP_002217566.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207858844|ref|YP_002245495.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197940058|gb|ACH77391.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|206710647|emb|CAR35005.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326625348|gb|EGE31693.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 200 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D+L + S + L+ R+ LQ+ G ++++I L +S TV A+L S +LD Sbjct: 127 DWLNSTELESRDIKALSARQREILQMLAAGESNKQIGRALNISTGTVKAHLESLYRRLDV 186 Query: 219 VNRIQA 224 NR QA Sbjct: 187 KNRTQA 192 >gi|163745782|ref|ZP_02153141.1| transcription regulator, LuxR family, putative [Oceanibulbus indolifex HEL-45] gi|161380527|gb|EDQ04937.1| transcription regulator, LuxR family, putative [Oceanibulbus indolifex HEL-45] Length = 253 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 4/154 (2%) Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI---FTSEFLM 140 +LP+ W ++ +E + + + + G P GI+ V G + V+ F ++ Sbjct: 93 VLPVYWSAVSKEARLTRAERAYMDRLLGRYPNDGISLKVH-GPGGDSAVVGLGFAAKQAR 151 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L++ + + A + L + +S L+ RE L+ G ++ IAE LG+ Sbjct: 152 LSSIALYKLLCAAQIAHLRYCALAESQSPRDFGLSPREVEVLEWIATGKSNGVIAEILGI 211 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S HTV+ + KLD +R A + + G + Sbjct: 212 SPHTVDTIVRRIFAKLDVNDRTTAAIRGLGAGLL 245 >gi|161830943|ref|YP_001596915.1| LuxR family transcriptional regulator [Coxiella burnetii RSA 331] gi|161762810|gb|ABX78452.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 331] Length = 216 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 10/131 (7%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFK 165 +EG LLP + VR G++ +S+ L + G Y I L L K Sbjct: 84 MEGELLPMRLLDVGVR------GFITKSSDSGELERAIRAVHSGQRYISSAIASRLALSK 137 Query: 166 KRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + L+ R+ L L G +EEIA++L ++ TVN++ KL N ++ Sbjct: 138 TTPTKSPFDQLSHRQMEVLLLLAKGMKAEEIAKQLHITTKTVNSHRYRMFDKLGVKNDVE 197 Query: 224 AIAKAIRFGYI 234 I A+++G I Sbjct: 198 LIKLAVQYGVI 208 >gi|104779522|ref|YP_606020.1| LuxR family DNA-binding response regulator [Pseudomonas entomophila L48] gi|95108509|emb|CAK13203.1| putative DNA-binding response regulator, LuxR family [Pseudomonas entomophila L48] Length = 217 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Query: 156 VITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 VI L +KR+SA LT+R+ L+L G T+ IA+ LGLSV TV A+ Sbjct: 133 VIGQALRHSRKRTSAPPQAPLTKRQLEILRLIARGETTRSIADGLGLSVKTVEAH 187 >gi|91223978|ref|ZP_01259241.1| nitrate/nitrite response regulator protein [Vibrio alginolyticus 12G01] gi|91190889|gb|EAS77155.1| nitrate/nitrite response regulator protein [Vibrio alginolyticus 12G01] Length = 210 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 7/123 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAAR 172 A I VR G +GY++ +E L E++ +AH A Q ++ +L ++ Sbjct: 90 ADIEAIVRSG--ADGYLLKDTEPDELV-ELLKQAHQGDKAYSQEVSKYLSERSEQEDVFD 146 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-RF 231 LT+RE+ L+ G+ +++IA++L +S TV ++ S KL +R A + RF Sbjct: 147 TLTDRESQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERF 206 Query: 232 GYI 234 G I Sbjct: 207 GDI 209 >gi|254237247|ref|ZP_04930570.1| hypothetical protein PACG_03306 [Pseudomonas aeruginosa C3719] gi|126169178|gb|EAZ54689.1| hypothetical protein PACG_03306 [Pseudomonas aeruginosa C3719] Length = 496 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA++LGL+ +TV ++ + KLD +R +AI A G Sbjct: 425 DLTAREREVFDLICQGLADKEIAKELGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 484 Query: 233 Y 233 + Sbjct: 485 F 485 >gi|332096683|gb|EGJ01674.1| regulatory protein sdiA [Shigella boydii 3594-74] Length = 147 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 86 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 145 Query: 233 YI 234 I Sbjct: 146 LI 147 >gi|300791059|ref|YP_003771350.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800573|gb|ADJ50948.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 218 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G ++ EIA+ L LS TV ++G KL+ +R+QA+ A G Sbjct: 153 LTDREREVLVLIAKGMSNLEIADALFLSEATVKTHVGRILAKLELRDRVQAVVLAYETG 211 >gi|298245547|ref|ZP_06969353.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553028|gb|EFH86893.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 201 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G + EIA +L LS TV +L +A KL+A NR++A A + G+ Sbjct: 141 LTPREREVLAATLPGISHAEIATRLALSEGTVRNHLSAAMQKLEARNRMEAARLAEQKGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|297625366|ref|YP_003687129.1| LuxR family transcriptional regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921131|emb|CBL55678.1| two-component response regulator LuxR [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 236 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 3/70 (4%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KKR A LT+RE L L G G + EIAE L L TV ++G KL +R+ Sbjct: 166 KKRLEA---LTDREREVLTLVGQGLNNTEIAETLFLGSATVKTHIGHILAKLQLRDRVHM 222 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 223 VVFAYDAGLV 232 >gi|269125895|ref|YP_003299265.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310853|gb|ACY97227.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 218 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 38/63 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A R LT+RE+ L L G +++ +A +L +S T+ ++L + KL+ +R AIA A+ Sbjct: 153 AHRGLTQRESEVLSLLVAGLSNKAMAARLVVSEETIKSHLRALYRKLEVTDRSGAIAVAL 212 Query: 230 RFG 232 R G Sbjct: 213 REG 215 >gi|226308199|ref|YP_002768159.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226187316|dbj|BAH35420.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 209 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L+ A DG IA L LS TV +L SA K A R +A+ A G+ Sbjct: 149 LTERETQVLRAAHDGAPVAAIAGALFLSAGTVRNHLSSAMGKTGASTRAEAVRIAESNGW 208 Query: 234 I 234 + Sbjct: 209 L 209 >gi|289208492|ref|YP_003460558.1| LuxR family transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288944123|gb|ADC71822.1| transcriptional regulator, LuxR family [Thioalkalivibrio sp. K90mix] Length = 204 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NLT RE G ++EIA +LG++ TV +LGS KL+ +R+Q + R Sbjct: 139 NLTPREREVALAVTTGAHNKEIARQLGMTERTVKMHLGSVFKKLNVDDRVQLVLHLTRL 197 >gi|161616659|ref|YP_001590624.1| hypothetical protein SPAB_04476 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168232438|ref|ZP_02657496.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235205|ref|ZP_02660263.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168241764|ref|ZP_02666696.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168260660|ref|ZP_02682633.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168818573|ref|ZP_02830573.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194449703|ref|YP_002047634.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194468644|ref|ZP_03074628.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194737459|ref|YP_002116543.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250551|ref|YP_002148534.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204928537|ref|ZP_03219736.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|224585403|ref|YP_002639202.1| hypothetical protein SPC_3680 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238910366|ref|ZP_04654203.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161366023|gb|ABX69791.1| hypothetical protein SPAB_04476 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194408007|gb|ACF68226.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455008|gb|EDX43847.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712961|gb|ACF92182.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197214254|gb|ACH51651.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197291362|gb|EDY30714.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|204321970|gb|EDZ07168.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205333300|gb|EDZ20064.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205339085|gb|EDZ25849.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344401|gb|EDZ31165.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350320|gb|EDZ36951.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|224469931|gb|ACN47761.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320088025|emb|CBY97787.1| putative HTH-type transcriptional regulator yhjB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322614001|gb|EFY10937.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617893|gb|EFY14786.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625492|gb|EFY22318.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629957|gb|EFY26730.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632154|gb|EFY28905.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636496|gb|EFY33203.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643130|gb|EFY39704.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644649|gb|EFY41185.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651327|gb|EFY47711.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322652757|gb|EFY49096.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659058|gb|EFY55310.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663240|gb|EFY59444.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668726|gb|EFY64879.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674470|gb|EFY70563.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678323|gb|EFY74384.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682419|gb|EFY78440.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684133|gb|EFY80139.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192311|gb|EFZ77543.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196261|gb|EFZ81413.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201409|gb|EFZ86475.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206481|gb|EFZ91442.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212073|gb|EFZ96900.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216978|gb|EGA01701.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220343|gb|EGA04797.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224391|gb|EGA08680.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228320|gb|EGA12451.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233413|gb|EGA17506.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237126|gb|EGA21193.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243659|gb|EGA27675.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246097|gb|EGA30084.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250877|gb|EGA34755.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257630|gb|EGA41316.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261837|gb|EGA45404.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266106|gb|EGA49597.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268650|gb|EGA52117.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 200 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D+L + S + L+ R+ LQ+ G ++++I L +S TV A+L S +LD Sbjct: 127 DWLNSTELESRDIKALSARQREILQMLAAGESNKQIGRALNISTGTVKAHLESLYRRLDV 186 Query: 219 VNRIQA 224 NR QA Sbjct: 187 KNRTQA 192 >gi|149187522|ref|ZP_01865819.1| nitrate/nitrite response regulator protein [Vibrio shilonii AK1] gi|148838402|gb|EDL55342.1| nitrate/nitrite response regulator protein [Vibrio shilonii AK1] Length = 210 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 11/113 (9%) Query: 129 NGYVIFTSEFLMLANEVI------IEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E +E+I + A I +LE S LTERE L Sbjct: 101 DGYLLKDTE----PDEIIELLRGLTSGNKAFSSAIEKYLEERANTSDVFATLTEREMQIL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234 Q G+ +++IA++L +S TV ++ S KL +R A I RFG I Sbjct: 157 QEVAKGFRNKQIADRLFISESTVKVHMKSLLRKLQVPSRTAATILYLERFGEI 209 >gi|170721339|ref|YP_001749027.1| LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169759342|gb|ACA72658.1| transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 491 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE L L +G +EIA +L L+++TV ++ + KLD +R +AI A Sbjct: 428 DLTRRERDVLALICEGLADKEIATRLNLALNTVRNHVATVYSKLDVHSRSEAIVWA 483 >gi|170725009|ref|YP_001759035.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169810356|gb|ACA84940.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 221 Score = 38.5 bits (88), Expect = 0.70, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE + + L G ++EIA +L +S HTV A++ S K + NR++ Sbjct: 156 LTSRERTIISLVSSGARNKEIAHRLCISEHTVKAHISSIFRKTQSRNRVE 205 >gi|319781056|ref|YP_004140532.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166944|gb|ADV10482.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 219 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL G + +IAE+LG+S+ T + + KL N + A A+R G Sbjct: 157 LTRRERQILQLVAQGMITRDIAERLGISLPTARKHRENLMGKLSLHNTAELTAYAVRLG 215 >gi|297623311|ref|YP_003704745.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164491|gb|ADI14202.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 177 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 9/100 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 LGF G + E + A+ A G + ++ LTERE + L+ Sbjct: 68 LGFGPQGLAVVGREPVDFADLAQRVARGETF---------YEGPPLPPDPLTERERTVLR 118 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L G+T+ IA +LGLS V+ + S K+ NR+Q Sbjct: 119 LLATGHTNAAIARRLGLSGGRVSNLVMSVREKVGVENRVQ 158 >gi|296268221|ref|YP_003650853.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091008|gb|ADG86960.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 206 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIA +L ++ TV ++ + +KL +R QA A+R G Sbjct: 146 LTAREREVLRLIAAGRSNREIARELSVAEKTVKTHVSNVLMKLGVQDRTQAALYAVRRGL 205 Query: 234 I 234 + Sbjct: 206 V 206 >gi|256396740|ref|YP_003118304.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362966|gb|ACU76463.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 314 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K S A + T+R L+L DG T E A++LG+S TV + +L A +R +A Sbjct: 247 KAESPAGLSPTDRH--LLRLLADGLTDEAAAKRLGISARTVRRIMADLMDRLGAESRFEA 304 Query: 225 IAKAIRFGYI 234 +A R G++ Sbjct: 305 GVEAARRGWL 314 >gi|271969975|ref|YP_003344171.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513150|gb|ACZ91428.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 221 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR--NLTERET 179 +G+++ +E L + + + A G ++I +F K+ LTERE Sbjct: 101 SGFLVKDTEPAELIHGIKVVARGDALIAPSVTRRLIAEFAGRVKRPEPGPEFNGLTERER 160 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L G +++EIA +L LS T ++ KL A +R Q + A G + Sbjct: 161 EVLTLVAGGLSNDEIAARLVLSPATAKTHVSRIMTKLHARDRTQLVVLAYEAGVVT 216 >gi|256378301|ref|YP_003101961.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922604|gb|ACU38115.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 217 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L +G ++ EIAE L + TV ++LG A K+ A +R+Q + A + G Sbjct: 155 LTAREKEVVVLLAEGRSNVEIAEALFIEPSTVKSHLGRAMTKIGARDRLQTVVWAYQNG 213 >gi|167574161|ref|ZP_02367035.1| probable two-component response regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 192 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 6/108 (5%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQL 184 NGY++ S L + + G + VI L + + + A + LT RE L+L Sbjct: 85 NGYLLKNSSKQTLLDAIWKVWRG--HTVIDPALNVDQVTTKAVPDGAVALTPRERQVLKL 142 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +G + +IAEKL +++ TV + + KLDA N + A R G Sbjct: 143 ISEGCRNRDIAEKLTITIKTVETHRLNLMRKLDAHNAAELANWAHRLG 190 >gi|154251588|ref|YP_001412412.1| two component LuxR family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155538|gb|ABS62755.1| two component transcriptional regulator, LuxR family [Parvibaculum lavamentivorans DS-1] Length = 213 Score = 38.5 bits (88), Expect = 0.71, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + S LT RE L+ DG +++ IA+ L ++ TV A+L S KL A +R A+ Sbjct: 144 RTSGQKATLTSRELQVLECLADGQSNKMIAQTLSITEDTVKAHLKSLYEKLGASDRAHAV 203 Query: 226 AKAIR 230 A ++R Sbjct: 204 AISLR 208 >gi|326318307|ref|YP_004235979.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375143|gb|ADX47412.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 233 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A LT R+ L L +G ++ IA L LS HTV +L + KL A NR++ I++ Sbjct: 165 SPADLGLTPRQGQILALVLEGLPNKPIANALHLSEHTVKEHLTAILQKLGASNRVELISR 224 >gi|289425149|ref|ZP_06426926.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289426574|ref|ZP_06428314.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295130635|ref|YP_003581298.1| putative Hemoglobin-dependent two component system response regulator HrrA [Propionibacterium acnes SK137] gi|289154127|gb|EFD02815.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289160218|gb|EFD08382.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291377220|gb|ADE01075.1| putative Hemoglobin-dependent two component system response regulator HrrA [Propionibacterium acnes SK137] gi|313764411|gb|EFS35775.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313772207|gb|EFS38173.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313792097|gb|EFS40198.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313801951|gb|EFS43185.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313807563|gb|EFS46050.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313810072|gb|EFS47793.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313812898|gb|EFS50612.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313815948|gb|EFS53662.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818604|gb|EFS56318.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313825246|gb|EFS62960.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313827534|gb|EFS65248.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313830402|gb|EFS68116.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313833772|gb|EFS71486.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|313838777|gb|EFS76491.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314915403|gb|EFS79234.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918316|gb|EFS82147.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314920126|gb|EFS83957.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314931648|gb|EFS95479.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314955704|gb|EFT00106.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314958103|gb|EFT02206.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314959957|gb|EFT04059.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314962754|gb|EFT06854.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314967878|gb|EFT11977.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314973404|gb|EFT17500.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314976083|gb|EFT20178.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314978528|gb|EFT22622.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314983897|gb|EFT27989.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314988079|gb|EFT32170.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314989886|gb|EFT33977.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315077971|gb|EFT50022.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315080596|gb|EFT52572.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315084266|gb|EFT56242.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315085610|gb|EFT57586.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315088338|gb|EFT60314.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315095949|gb|EFT67925.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315098580|gb|EFT70556.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101419|gb|EFT73395.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315108635|gb|EFT80611.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327326231|gb|EGE68021.1| DNA-binding response regulator VraR [Propionibacterium acnes HL096PA2] gi|327331894|gb|EGE73631.1| DNA-binding response regulator VraR [Propionibacterium acnes HL096PA3] gi|327443096|gb|EGE89750.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327445878|gb|EGE92532.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448140|gb|EGE94794.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327450738|gb|EGE97392.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327453185|gb|EGE99839.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|327453920|gb|EGF00575.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328753426|gb|EGF67042.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328754157|gb|EGF67773.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328754593|gb|EGF68209.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328760809|gb|EGF74375.1| DNA-binding response regulator VraR [Propionibacterium acnes HL099PA1] gi|332675478|gb|AEE72294.1| nitrate/nitrite response regulator protein NarP [Propionibacterium acnes 266] Length = 210 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +LT RE L+ + G ++ +IAE L +S TV +L KL +R Sbjct: 138 LMARMRSPRTSLTARELDVLEASAQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRS 197 Query: 223 QAIAKAIRFGYI 234 A+AKA G+I Sbjct: 198 AAVAKARDIGFI 209 >gi|213969640|ref|ZP_03397776.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301384782|ref|ZP_07233200.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302060724|ref|ZP_07252265.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|213925736|gb|EEB59295.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 222 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S++ LTERE L+ G T+++IA+ L LS TVN +L VKL R A + Sbjct: 154 RLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAATS 213 Query: 227 KAI 229 A+ Sbjct: 214 VAL 216 >gi|169630970|ref|YP_001704619.1| LuxR family transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169242937|emb|CAM63965.1| Probable transcriptional regulator, LuxR family [Mycobacterium abscessus] Length = 216 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +E + L+L G+G T+ +IAE++ L+ TV Y+ KLD R Q A + Sbjct: 150 LTAQERTLLELIGEGLTNRQIAERMFLAEKTVKNYVSRLLTKLDLERRTQVAVLATKLA 208 >gi|148553727|ref|YP_001261309.1| two component LuxR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148498917|gb|ABQ67171.1| two component transcriptional regulator, LuxR family [Sphingomonas wittichii RW1] Length = 229 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L G T EIA++L LS HTV ++ + KL R +A+ +AI+ Sbjct: 164 APRLTPRELDILWGIAKGLTYNEIADQLDLSRHTVPGHIKAIYRKLQVQTRGEAVYEAIQ 223 Query: 231 FGYI 234 G I Sbjct: 224 CGLI 227 >gi|296387253|ref|ZP_06876752.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313109643|ref|ZP_07795588.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|310882090|gb|EFQ40684.1| putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 212 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L GYTS E+AE+L +SV TV+ Y ++ A + + AI G Sbjct: 142 SLTPRERDVLLPLVRGYTSREVAEQLEVSVKTVDLYRARVMKRMQAQTLPELVGMAIAAG 201 Query: 233 YI 234 + Sbjct: 202 LV 203 >gi|300785449|ref|YP_003765740.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794963|gb|ADJ45338.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 234 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 34/58 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++T+RE L L +G T+ EIA +L ++ T ++G+ KL+A +R+ + A R Sbjct: 169 SITDRERQVLALVAEGLTNAEIARRLHIAPGTAKTHVGNLLTKLNARDRVHLVIHAYR 226 >gi|256751618|ref|ZP_05492494.1| transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus CCSD1] gi|256749568|gb|EEU62596.1| transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus CCSD1] Length = 143 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 1/118 (0%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLTE 176 IA P+ + GY+ ++ +A+E+I Y+++ ++ E + LT+ Sbjct: 25 IATPLYIDNDIVGYLDISTIKHNMADEMIGFIDLLVYKIVNEYKRETDLESQEDLEKLTD 84 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ ++ GYT I+ +LGL TV + KL N QAIAKAI+ I Sbjct: 85 KQIEIIKKCAKGYTELAISMELGLKPSTVKYHKKEIIKKLRVKNFQQAIAKAIKLNLI 142 >gi|229062451|ref|ZP_04199766.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228716840|gb|EEL68528.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 186 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 5/107 (4%) Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQ 183 +GY++ +S+ ++ A ++++ + +T L + +++ + N LTERE L Sbjct: 73 DGYLLKDSSSDQVVAAIRMVLQGDSVIHPRMTKKLITYHQQTKSESNENELTEREKEILF 132 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 133 ELAKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVR 179 >gi|288572830|ref|ZP_06391187.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568571|gb|EFC90128.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 215 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 156 VITDFLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +I D+L+L S A L++RE L L G +++E+A L +S +TV+ + Sbjct: 133 LIKDYLKLLDTAVPSRASLLSDREREVLALLAKGSSTKEVASSLHISKNTVDTHRRRIME 192 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLD N + I AIR G I Sbjct: 193 KLDCGNIAELIRFAIREGLI 212 >gi|107103713|ref|ZP_01367631.1| hypothetical protein PaerPA_01004784 [Pseudomonas aeruginosa PACS2] Length = 212 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L GYTS E+AE+L +SV TV+ Y ++ A + + AI G Sbjct: 142 SLTPRERDVLLPLVRGYTSREVAEQLEVSVKTVDLYRARVMKRMQAQTLPELVGMAIAAG 201 Query: 233 YI 234 + Sbjct: 202 LV 203 >gi|16766892|ref|NP_462507.1| transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167549170|ref|ZP_02342929.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167990827|ref|ZP_02571926.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168465108|ref|ZP_02699000.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197265905|ref|ZP_03165979.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|16422168|gb|AAL22466.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|195632478|gb|EDX50962.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197244160|gb|EDY26780.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205325818|gb|EDZ13657.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205330641|gb|EDZ17405.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248759|emb|CBG26609.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995841|gb|ACY90726.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160145|emb|CBW19665.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914630|dbj|BAJ38604.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226657|gb|EFX51707.1| Putative regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131966|gb|ADX19396.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990457|gb|AEF09440.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 200 Score = 38.5 bits (88), Expect = 0.72, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D+L + S + L+ R+ LQ+ G ++++I L +S TV A+L S +LD Sbjct: 127 DWLNSTELESRDIKALSARQREILQMLAAGESNKQIGRALNISTGTVKAHLESLYRRLDV 186 Query: 219 VNRIQA 224 NR QA Sbjct: 187 KNRTQA 192 >gi|325277057|ref|ZP_08142715.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097807|gb|EGB95995.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 491 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE L L +G +EIA +L L+++TV ++ + KLD +R +AI A Sbjct: 428 DLTRRERDVLALICEGLADKEIAARLNLALNTVRNHVATVYSKLDVHSRSEAIVWA 483 >gi|309812489|ref|ZP_07706242.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185] gi|308433544|gb|EFP57423.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185] Length = 253 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++ +IA + LS+++V +Y+ + K+ +R QA+ +R G Sbjct: 177 GLTPREAEVLALITQGLSNNDIAAQTHLSINSVKSYIRTGYRKIGVTSRSQAVLWGVRHG 236 Query: 233 Y 233 + Sbjct: 237 F 237 >gi|298251862|ref|ZP_06975665.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546454|gb|EFH80322.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L DG ++ EIA +L +S TV ++ + KL ++R QA A + G Sbjct: 156 LSERELDVLRLIADGRSNAEIASRLSISEKTVKGHVSNILSKLYLLDRTQAAVFAWQQGL 215 Query: 234 I 234 + Sbjct: 216 M 216 >gi|312199008|ref|YP_004019069.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311230344|gb|ADP83199.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 239 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+L +G + EIA KL +S +TV ++ + KL +R++A+ A+R G Sbjct: 175 HLTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQG 234 >gi|265767479|ref|ZP_06095145.1| transcriptional regulator GerE [Bacteroides sp. 2_1_16] gi|263252784|gb|EEZ24296.1| transcriptional regulator GerE [Bacteroides sp. 2_1_16] Length = 278 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA- 224 ++ ++ L++RE + LQL G TS EIA +L +S +TV+ + + KL N I+A Sbjct: 209 EKQDCSKLLSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEAC 268 Query: 225 -IAKAIRF 231 IAK ++ Sbjct: 269 RIAKELKL 276 >gi|255011592|ref|ZP_05283718.1| putative transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 278 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA- 224 ++ ++ L++RE + LQL G TS EIA +L +S +TV+ + + KL N I+A Sbjct: 209 EKQDCSKLLSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEAC 268 Query: 225 -IAKAIRF 231 IAK ++ Sbjct: 269 RIAKELKL 276 >gi|254994407|ref|ZP_05276597.1| two-component response regulator [Listeria monocytogenes FSL J2-064] Length = 187 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L +G +++EIA++L +++ TV ++ + KLD +R QA A + Sbjct: 123 DLTNRENEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHD 182 Query: 233 YI 234 + Sbjct: 183 LV 184 >gi|229087315|ref|ZP_04219457.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228696017|gb|EEL48860.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 186 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 5/107 (4%) Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQ 183 +GY++ +SE ++ A ++++ + +T L + +++ + N LTERE L Sbjct: 73 DGYLLKDSSSEQVVAAIRMVLQGDSVIHPRMTKKLITYHQQTKSESNENELTEREKEILF 132 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 133 ELVKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVR 179 >gi|68536744|ref|YP_251449.1| two-component system response regulator TcsR7 [Corynebacterium jeikeium K411] gi|68264343|emb|CAI37831.1| two-component system response regulator TcsR7 [Corynebacterium jeikeium K411] Length = 227 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE LQL G +++EIA+KL +S+ TV ++G K + +R+ + Sbjct: 157 LTPRELEILQLIALGLSNQEIADKLYISLPTVKTHVGRVLTKTQSRDRVHVV 208 >gi|53715583|ref|YP_101575.1| putative transcriptional regulator [Bacteroides fragilis YCH46] gi|52218448|dbj|BAD51041.1| putative transcriptional regulator [Bacteroides fragilis YCH46] Length = 278 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA- 224 ++ ++ L++RE + LQL G TS EIA +L +S +TV+ + + KL N I+A Sbjct: 209 EKQDCSKLLSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEAC 268 Query: 225 -IAKAIRF 231 IAK ++ Sbjct: 269 RIAKELKL 276 >gi|163845622|ref|YP_001633666.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222523324|ref|YP_002567794.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163666911|gb|ABY33277.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222447203|gb|ACM51469.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 213 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 19/36 (52%), Positives = 23/36 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +L+ERE L L GYT+ EIAE+L LS TV Y Sbjct: 149 SLSEREREVLLLVARGYTAAEIAEQLSLSPKTVETY 184 >gi|94313944|ref|YP_587153.1| LuxR family LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357796|gb|ABF11884.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Cupriavidus metallidurans CH34] Length = 947 Score = 38.5 bits (88), Expect = 0.73, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A L+ERE ++L G +++IA LGLS TV +L + KL +R +A+A+ Sbjct: 883 AEPLSEREADVVELLGQALPNKKIARTLGLSPETVKWHLRNIFRKLGVTSRDEAVAR 939 >gi|330879674|gb|EGH13823.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 222 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S++ LTERE L+ G T+++IA+ L LS TVN +L VKL R A + Sbjct: 154 RLSSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAATS 213 Query: 227 KAI 229 A+ Sbjct: 214 VAL 216 >gi|227545988|ref|ZP_03976037.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213622|gb|EEI81471.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517050|emb|CBK70666.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bifidobacterium longum subsp. longum F8] Length = 296 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A G Sbjct: 236 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 295 Query: 234 I 234 + Sbjct: 296 V 296 >gi|226311034|ref|YP_002770928.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226093982|dbj|BAH42424.1| probable transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 873 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE LQL G ++ +IA++L L++ TV + + KL R +A+A+A + G Sbjct: 813 LSERELEILQLIEKGLSNRDIAQQLFLALSTVKGHNRNVFDKLQVQRRTEAVARARQLGL 872 Query: 234 I 234 + Sbjct: 873 L 873 >gi|200387363|ref|ZP_03213975.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199604461|gb|EDZ03006.1| putative transcriptional regulator [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 200 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D+L + S + L+ R+ LQ+ G ++++I L +S TV A+L S +LD Sbjct: 127 DWLNSTELESRDIKALSARQREILQMLAAGESNKQIGRALNISTGTVKAHLESLYRRLDV 186 Query: 219 VNRIQA 224 NR QA Sbjct: 187 KNRTQA 192 >gi|116052233|ref|YP_788923.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115587454|gb|ABJ13469.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 214 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L GYTS E+AE+L +SV TV+ Y ++ A + + AI G Sbjct: 144 SLTPRERDVLLPLVRGYTSREVAEQLEVSVKTVDLYRARVMKRMQAQTLPELVGMAIAAG 203 Query: 233 YI 234 + Sbjct: 204 LV 205 >gi|88808256|ref|ZP_01123766.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] gi|88787244|gb|EAR18401.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] Length = 235 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE G + IA LGLSV TV +++G+A KL A +R Q A+ +G Sbjct: 170 ELSPRELEVAAGVARGLKNNAIASLLGLSVETVKSHVGNAMDKLGARDRTQMAVMALLYG 229 Query: 233 YI 234 I Sbjct: 230 LI 231 >gi|159902728|ref|YP_001550072.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] gi|159887904|gb|ABX08118.1| two-component response regulator [Prochlorococcus marinus str. MIT 9211] Length = 242 Score = 38.5 bits (88), Expect = 0.73, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 N T RE S LQL +G ++EIA KL S+ V Y+ +K +R + + A+ Sbjct: 180 NFTPREESVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYAL 236 >gi|302341508|ref|YP_003806037.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301638121|gb|ADK83443.1| two component transcriptional regulator, LuxR family [Desulfarculus baarsii DSM 2075] Length = 225 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 11/117 (9%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN----LTER 177 GYV+ S L + G CY ++ +F+++ + A++ LT+R Sbjct: 102 RGYVLKDSAGEKLVDAAKAVLRGECYLDSPVAGHIVDEFVKMPDMTPAPAQDSQERLTDR 161 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L +G + EIA+KL LS TV + + KL + I + AI G + Sbjct: 162 ERQLLRLVVEGLPNREIADKLCLSQKTVENHRANIMRKLGRHDVIGLVKYAIATGLV 218 >gi|297563008|ref|YP_003681982.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847456|gb|ADH69476.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 241 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 5/88 (5%) Query: 153 CYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++I +F EL K+ S+ LT RET L+L + EI E+L ++ +TV Sbjct: 152 ATKLIGEFAELAKQESAPPSRTTIPELTRRETEVLKLLARSLNNREIGERLFITENTVKN 211 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++ KL +R +A A+R Y+ Sbjct: 212 HVRKILEKLQVHSRTEAAIYAVRAEYVS 239 >gi|167566181|ref|ZP_02359097.1| DNA-binding response regulator [Burkholderia oklahomensis EO147] Length = 205 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 32/66 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S LT RE L+L DG + EIA L +S TV+ + KL A N I Sbjct: 132 ASPVDKLTRREKQILKLIVDGMRNREIASLLNISQKTVDCHRQRLMQKLGARNVANVIHW 191 Query: 228 AIRFGY 233 A R+GY Sbjct: 192 AYRYGY 197 >gi|163736433|ref|ZP_02143852.1| transcriptional regulator, LuxR family protein [Phaeobacter gallaeciensis BS107] gi|163741032|ref|ZP_02148424.1| autoinducer-binding transcriptional regulator, LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161385385|gb|EDQ09762.1| autoinducer-binding transcriptional regulator, LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161390303|gb|EDQ14653.1| transcriptional regulator, LuxR family protein [Phaeobacter gallaeciensis BS107] Length = 251 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT+R+ LQ GDG T+++IA +GL+ TV +L A L A+ KA Sbjct: 184 RGLTKRQREALQWVGDGKTTQDIALLMGLTPATVEKHLRLAREALAVETTAHAVLKA 240 >gi|15615637|ref|NP_243941.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus halodurans C-125] gi|10175697|dbj|BAB06794.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus halodurans C-125] Length = 74 Score = 38.5 bits (88), Expect = 0.74, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIAE+L +S TV ++ + KL R QA+ + IR G Sbjct: 12 LTKREREVFELLVQDKTTKEIAEQLFISEKTVRNHISNTMQKLGVKGRSQAVIELIRLG 70 >gi|124266085|ref|YP_001020089.1| ATP-dependent transcriptional regulator-like protein [Methylibium petroleiphilum PM1] gi|124258860|gb|ABM93854.1| ATP-dependent transcriptional regulator-like protein protein [Methylibium petroleiphilum PM1] Length = 896 Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ERE LQ +G ++EIA +L +S +TV +L + KL R+QAI A Sbjct: 835 LSEREKEMLQFLANGVANKEIASRLFVSENTVKFHLKNIYSKLGVSGRVQAINAA 889 >gi|313837284|gb|EFS74998.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928042|gb|EFS91873.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314972055|gb|EFT16153.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328907167|gb|EGG26933.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 217 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RE +L G ++ EIA +L +S TV ++ S K D +R+Q + A G Sbjct: 148 NLTSREIEVTRLVARGLSNAEIAAELTVSEATVKTHVSSCLTKCDLRDRVQLVVLAYESG 207 Query: 233 YI 234 I Sbjct: 208 LI 209 >gi|312138548|ref|YP_004005884.1| sensor kinase/luxr response regulator fusion [Rhodococcus equi 103S] gi|311887887|emb|CBH47199.1| putative sensor kinase/LuxR response regulator fusion [Rhodococcus equi 103S] Length = 751 Score = 38.5 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L++ + + + NLT RE +L +G T+ IAE+L ++ TV ++ KL + Sbjct: 676 LDVAEPAADSGHNLTRREMQVAELVAEGMTNRAIAERLVIAPRTVEGHVDHILAKLGFTS 735 Query: 221 RIQAIA 226 R Q A Sbjct: 736 RTQVAA 741 >gi|298250665|ref|ZP_06974469.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548669|gb|EFH82536.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1075 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 39/76 (51%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D E + S++ L+E E L+ +GYT EIA +L + +TV + KL+ Sbjct: 1000 DMAEKPAENSASTELLSEHEFVILRCLAEGYTDREIARRLVRAENTVKTHTKHIYDKLNV 1059 Query: 219 VNRIQAIAKAIRFGYI 234 +R QAIA++ G + Sbjct: 1060 HSRTQAIARSRELGLL 1075 >gi|325676388|ref|ZP_08156067.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325552949|gb|EGD22632.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 770 Score = 38.5 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L++ + + + NLT RE +L +G T+ IAE+L ++ TV ++ KL + Sbjct: 695 LDVAEPAADSGHNLTRREMQVAELVAEGMTNRAIAERLVIAPRTVEGHVDHILAKLGFTS 754 Query: 221 RIQAIA 226 R Q A Sbjct: 755 RTQVAA 760 >gi|295688318|ref|YP_003592011.1| LuxR family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295430221|gb|ADG09393.1| transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 258 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 28/46 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LTERE L+L G+ ++ A LGLSVHTVN L A KL Sbjct: 5 SQTLTEREKETLRLLLAGHDAKSAAAALGLSVHTVNERLREARRKL 50 >gi|239918649|ref|YP_002958207.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281415136|ref|ZP_06246878.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839856|gb|ACS31653.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 222 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 6/77 (7%) Query: 165 KKRSSAARNLTE------RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 ++ S+AA LTE RE + G ++ EIA+ L L+ TV ++LG K A Sbjct: 143 RRESAAAHALTELEELTPRELEVVTELAKGSSNAEIAQALFLAEATVKSHLGKIMDKWQA 202 Query: 219 VNRIQAIAKAIRFGYIC 235 +R+Q + +A R G + Sbjct: 203 RDRVQVLIRASRAGLVS 219 >gi|238756079|ref|ZP_04617401.1| Two component transcriptional regulator, LuxR family [Yersinia ruckeri ATCC 29473] gi|238705685|gb|EEP98080.1| Two component transcriptional regulator, LuxR family [Yersinia ruckeri ATCC 29473] Length = 209 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY++ SE +L + + A G + +TD+L ++ + LTERE LQ Sbjct: 102 DGYLLKDSEPEVLLEHLCLAAQGESVFSREVTDYLASRHEQINPFAELTERELDVLQEVA 161 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 162 RGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 199 >gi|238059358|ref|ZP_04604067.1| sensor transduction protein [Micromonospora sp. ATCC 39149] gi|237881169|gb|EEP69997.1| sensor transduction protein [Micromonospora sp. ATCC 39149] Length = 221 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L G ++ EIA ++ ++ TV ++G KL +R+QA+ A G Sbjct: 156 QLTEREREVLLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKLRLRDRVQAVVLAYESG 215 Query: 233 YIC 235 + Sbjct: 216 LVT 218 >gi|163800212|ref|ZP_02194113.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] gi|159175655|gb|EDP60449.1| putative transcriptional regulator, LuxR family protein [Vibrio sp. AND4] Length = 216 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L++ +G ++ EIA+ L +S HT+ ++L + K++ NR QA A R Sbjct: 158 LTRREIQVLKMLKEGGSNIEIADSLFISEHTIKSHLYNIFRKIEVKNRTQATRWAKR 214 >gi|149182664|ref|ZP_01861132.1| two-component response regulator [Bacillus sp. SG-1] gi|148849633|gb|EDL63815.1| two-component response regulator [Bacillus sp. SG-1] Length = 216 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+ G+G T++EI+++L + V T ++ + KL +R QA A R G Sbjct: 149 DLTTRELEVLKCLGEGMTNQEISDELFIGVKTTKTHVSNILSKLGVADRTQAAIYANRNG 208 Query: 233 YI 234 + Sbjct: 209 IL 210 >gi|13992202|emb|CAC38026.1| alkB1GHJ regulator [Alcanivorax borkumensis] Length = 872 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 7/78 (8%) Query: 158 TDFLELFKKRSSAARNLTE-------RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 T LE+ K+ + A LT ++ S L+ G T++EIAE+L ++ TV +L Sbjct: 789 TKDLEVRKEEADARPKLTNTQSTITIKQISLLKCVSSGMTNKEIAERLLITEDTVKWHLK 848 Query: 211 SATVKLDAVNRIQAIAKA 228 +L NR+QA+++A Sbjct: 849 KIFSELKVTNRVQAVSEA 866 >gi|330466893|ref|YP_004404636.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809864|gb|AEB44036.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 238 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A R+LT RE L L G ++ EIA L L TV +++ KL+ +R+QA+ A Sbjct: 169 AALRDLTPREREVLVLVAGGASNAEIATALHLGEATVKSHVSRVLAKLELRDRVQAVVFA 228 Query: 229 IRFGYI 234 G + Sbjct: 229 YEQGVV 234 >gi|320538995|ref|ZP_08038670.1| putative DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Serratia symbiotica str. Tucson] gi|320030928|gb|EFW12932.1| putative DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Serratia symbiotica str. Tucson] Length = 216 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +T LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VTKLLEKISANGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|297159285|gb|ADI08997.1| two component LuxR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 228 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 33/69 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + S LTERE L + G +++EIA L + TV Y+ KL +R QA Sbjct: 139 RAPSGPEQLTEREAEVLTMLARGKSNKEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAA 198 Query: 226 AKAIRFGYI 234 A++ G + Sbjct: 199 VYAVQSGLV 207 >gi|296161870|ref|ZP_06844671.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295887889|gb|EFG67706.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 262 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 32/65 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AA LT R+ CL G TS EI E LG S +TV+ ++ A L+ +R A A Sbjct: 196 AAHLLTARQLECLTWVARGKTSAEIGEILGRSHYTVDYHIKEAMEALNIRSRTAAAVHAT 255 Query: 230 RFGYI 234 G I Sbjct: 256 VHGII 260 >gi|288561504|ref|YP_003428910.1| response regulator receiver protein [Bacillus pseudofirmus OF4] gi|288548136|gb|ADC52018.1| response regulator receiver protein [Bacillus pseudofirmus OF4] Length = 201 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 12/164 (7%) Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + ++ DD L N + IIW EE + +S + E ++P + LG Sbjct: 46 VASFIDDLLEELNDSM--IIWAIDPEERALVNS--ILTYHEASVIP----SIKETLGEEL 97 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 N V + + E++++ + + F + + N TE++ + +G Sbjct: 98 NKAVTYHPYLALTFQELVLKEVQKGEE--NEEAPSFTQEPFSTFNQTEKD--IVHYLFNG 153 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 Y +EEIA K +SVHTVN + KL N+I+ + + I Sbjct: 154 YKTEEIANKACISVHTVNNNISRIKKKLRVKNKIEIVKRVIEVN 197 >gi|220912063|ref|YP_002487372.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858941|gb|ACL39283.1| transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 845 Score = 38.5 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +LT RE ++LA G T EIA++L +SV TV +L VKL +R Sbjct: 788 HLTRREQDIVELAVQGLTDREIAQRLMVSVRTVEGHLYRTYVKLGVRSR 836 >gi|220912062|ref|YP_002487371.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219858940|gb|ACL39282.1| transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 912 Score = 38.5 bits (88), Expect = 0.75, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 31/54 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 SS + LT RE +LAG G ++ +IA ++G+SV TV +L KL +R Sbjct: 852 SSGSPLLTSRERQIARLAGRGASNRDIALEMGVSVRTVEGHLYQVFTKLGVTSR 905 >gi|126740015|ref|ZP_01755705.1| transcriptional regulator, LuxR family/sensory box protein [Roseobacter sp. SK209-2-6] gi|126718834|gb|EBA15546.1| transcriptional regulator, LuxR family/sensory box protein [Roseobacter sp. SK209-2-6] Length = 211 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + F +L ++R + LT RE L G+G TS+EIA L LS TV + GS Sbjct: 120 RAVWSFADLSEQR--PYQPLTRREREVYSLLGEGQTSKEIARTLNLSYRTVEVHRGSLLK 177 Query: 215 KLDAVN 220 K+ N Sbjct: 178 KMGVSN 183 >gi|126660738|ref|ZP_01731836.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126617979|gb|EAZ88750.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 245 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 43/76 (56%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D L+ ++ + +LT +E L+L G + +IAE+L ++V TV ++ S KL A Sbjct: 169 DALDEDTQQMINSSSLTPKELEVLELIVAGCNNAQIAERLFVTVGTVKTHVRSILNKLCA 228 Query: 219 VNRIQAIAKAIRFGYI 234 +R QA +A+R G + Sbjct: 229 NDRTQAAVRALRSGLV 244 >gi|15672873|ref|NP_267047.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|12723822|gb|AAK04989.1|AE006323_4 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|326406436|gb|ADZ63507.1| two-component system regulator [Lactococcus lactis subsp. lactis CV56] Length = 209 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 62/116 (53%), Gaps = 8/116 (6%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-----ELFKKRSSAARNL 174 FP L GY++ TS+ +A+ + A+G V++D + + ++ +L Sbjct: 93 FPA-LAAGAKGYILKTSQAADIASAIRKVANGE--DVLSDAVKEKIAQQKHRKHELYDDL 149 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++RE L++ G +++EIA++L +S+ TV ++ + KL+ +R QA AI+ Sbjct: 150 SKRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQ 205 >gi|33860729|ref|NP_892290.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633671|emb|CAE18628.1| two-component response regulator [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 242 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 38/74 (51%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++TD L K+ S + T RE S LQL +G ++EIA +L S+ V Y+ +K Sbjct: 163 MLTDQNPLNKENSIDIPSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIK 222 Query: 216 LDAVNRIQAIAKAI 229 +R + + A+ Sbjct: 223 TSTSSRTELVRYAL 236 >gi|116494716|ref|YP_806450.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|116104866|gb|ABJ70008.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] Length = 202 Score = 38.5 bits (88), Expect = 0.75, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL +A N LT+RE + L G +S++IA L LS TV YL + KL N Sbjct: 128 ELVTNMVTAESNPLTDRELAVLAEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHN 187 Query: 221 RIQAIAKAIRFGYI 234 RI+A+ A + ++ Sbjct: 188 RIEAVQMAKKNKWL 201 >gi|311894385|dbj|BAJ26793.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L G G ++ EIA L L+ TV ++LG KL +R+QA+ A R G Sbjct: 161 RLSAREHEVLVQVGRGLSNAEIAAALHLAEATVKSHLGRILPKLGLRDRVQAVVLAHRAG 220 Query: 233 YI 234 + Sbjct: 221 LV 222 >gi|301165031|emb|CBW24597.1| putative transcriptional regulator GerE, LuxR family [Bacteroides fragilis 638R] Length = 278 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA- 224 ++ ++ L++RE + LQL G TS EIA +L +S +TV+ + + KL N I+A Sbjct: 209 EKQDCSKLLSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEAC 268 Query: 225 -IAKAIRF 231 IAK ++ Sbjct: 269 RIAKELKL 276 >gi|294102345|ref|YP_003554203.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] gi|293617325|gb|ADE57479.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] Length = 231 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 155 QVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 QV L F +R L T RE L G ++ E+A K+ LS TV ++ Sbjct: 130 QVAGKLLTSFSRRKEENDQLYELTPREKEILYWLAQGLSNSEVASKMVLSEKTVKNHVSH 189 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KLD +R QA A R G+ Sbjct: 190 VLKKLDLRDRTQAAILAWRIGF 211 >gi|311742864|ref|ZP_07716672.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311313544|gb|EFQ83453.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 216 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L G+++ EIA +L +S TV +++ KL+ +R+QA+ A G Sbjct: 154 ELTERERDVLVLLARGHSNAEIAGELYVSAATVKSHVSHILAKLEVRDRVQAVILAFENG 213 Query: 233 YI 234 + Sbjct: 214 LM 215 >gi|269926239|ref|YP_003322862.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789899|gb|ACZ42040.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 225 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 174 LTERETSCLQLAGDGYTS-EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G +S ++AEKLG++ HTV + + KL NR Q A A R+ Sbjct: 152 LTSREREILSLLVHGVSSTRDLAEKLGVTEHTVKFHFRNILSKLHLKNRAQVAAYAARYN 211 Query: 233 YIC 235 + Sbjct: 212 AVA 214 >gi|226310364|ref|YP_002770258.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093312|dbj|BAH41754.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 235 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++IA+ L +S TV ++ K+ +R QA+AKAIR+ Sbjct: 173 QLTDRERDVLEQLSYGKRNDQIAQHLLISGGTVKTHIHRILQKMGVEDRTQAVAKAIRYK 232 Query: 233 YI 234 + Sbjct: 233 IV 234 >gi|297191473|ref|ZP_06908871.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197722089|gb|EDY65997.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 326 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 7/110 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G + ++F+S ++LA + EA+ + S A LT +E LQL Sbjct: 224 GQAQPSALLFSSPPVVLAMRALFEAYW-------EHASPMDAPVSRAGGLTPQERKLLQL 276 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T E +A LG+ V T + +L A +R +A +A R +I Sbjct: 277 LATGLTDEAVARALGIGVRTERRIVAELMERLGASSRFEAGVQATRREWI 326 >gi|146307690|ref|YP_001188155.1| two component LuxR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145575891|gb|ABP85423.1| two component transcriptional regulator, LuxR family [Pseudomonas mendocina ymp] Length = 213 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQ A GY++ +IA +L ++ TV ++ KL A NR A+A A++ G Sbjct: 147 LSPREVEVLQAAALGYSNRDIALQLRITEDTVKGHMRLIMDKLGANNRTHAVAIAVQRGV 206 Query: 234 I 234 + Sbjct: 207 L 207 >gi|254242878|ref|ZP_04936200.1| hypothetical protein PA2G_03647 [Pseudomonas aeruginosa 2192] gi|126196256|gb|EAZ60319.1| hypothetical protein PA2G_03647 [Pseudomonas aeruginosa 2192] Length = 214 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L GYTS E+AE+L +SV TV+ Y ++ A + + AI G Sbjct: 144 SLTPRERDVLLPLVRGYTSREVAEQLEVSVKTVDLYRARVMKRMQAQTLPELVGMAIAAG 203 Query: 233 YI 234 + Sbjct: 204 LV 205 >gi|16762696|ref|NP_458313.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29144183|ref|NP_807525.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213052820|ref|ZP_03345698.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419230|ref|ZP_03352296.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426509|ref|ZP_03359259.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580128|ref|ZP_03361954.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213647458|ref|ZP_03377511.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824322|ref|ZP_06543915.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25298761|pir||AG0986 hypothetical luxR-family transcription regulator STY4197 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505002|emb|CAD08019.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi] gi|29139820|gb|AAO71385.1| hypothetical luxR-family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 200 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D+L + S + L+ R+ LQ+ G ++++I L +S TV A+L S +LD Sbjct: 127 DWLNSTELESHDIKALSARQREILQMLAAGESNKQIGRALNISTGTVKAHLESLYRRLDV 186 Query: 219 VNRIQA 224 NR QA Sbjct: 187 KNRTQA 192 >gi|269962780|ref|ZP_06177121.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269832470|gb|EEZ86588.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 222 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 36/60 (60%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S + LT+RE + G ++++IAE+L +S +TV +L + K+D NR+QA+ A Sbjct: 152 SVSAILTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWA 211 >gi|269793664|ref|YP_003313119.1| ATP-dependent transcriptional regulator [Sanguibacter keddieii DSM 10542] gi|269095849|gb|ACZ20285.1| ATP-dependent transcriptional regulator [Sanguibacter keddieii DSM 10542] Length = 868 Score = 38.5 bits (88), Expect = 0.76, Method: Composition-based stats. Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Query: 170 AARNLTERETSCL-QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A LT RE L +LA G TS IAE+L +S HTV + L + KL +R A+A A Sbjct: 794 AVAPLTSREAVILRELASTGSTSV-IAERLVVSPHTVKSQLRTLYRKLGVTSRASALAVA 852 Query: 229 IRFGYI 234 R+G + Sbjct: 853 RRYGLL 858 >gi|228474840|ref|ZP_04059571.1| transcriptional regulatory protein DegU [Staphylococcus hominis SK119] gi|314935685|ref|ZP_07843037.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] gi|228271503|gb|EEK12871.1| transcriptional regulatory protein DegU [Staphylococcus hominis SK119] gi|313656250|gb|EFS19990.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] Length = 217 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L L GY ++EIAEKL +SV TV A+ KL+ ++ + + A++ Sbjct: 155 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEYALK 211 >gi|154252124|ref|YP_001412948.1| regulatory protein LuxR [Parvibaculum lavamentivorans DS-1] gi|154156074|gb|ABS63291.1| regulatory protein LuxR [Parvibaculum lavamentivorans DS-1] Length = 270 Score = 38.5 bits (88), Expect = 0.76, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 25/44 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LT+RE CL+L GY ++AE G++ TV +L +A K Sbjct: 205 RLTQREWDCLRLTAQGYREADVAEMNGIAATTVRYHLDNAVAKF 248 >gi|326330563|ref|ZP_08196870.1| two-component system, regulatory protein [Nocardioidaceae bacterium Broad-1] gi|325951638|gb|EGD43671.1| two-component system, regulatory protein [Nocardioidaceae bacterium Broad-1] Length = 219 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 3/69 (4%) Query: 169 SAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +AAR LT RE L +G ++EEIA+ L L V TV ++L KL +R+QA Sbjct: 149 TAARGSELLTTRELDILLHLAEGMSNEEIAQALVLEVSTVKSHLARMMPKLGVKSRLQAA 208 Query: 226 AKAIRFGYI 234 A + G I Sbjct: 209 VWAYQSGLI 217 >gi|167763457|ref|ZP_02435584.1| hypothetical protein BACSTE_01831 [Bacteroides stercoris ATCC 43183] gi|167698751|gb|EDS15330.1| hypothetical protein BACSTE_01831 [Bacteroides stercoris ATCC 43183] Length = 217 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Query: 166 KRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +RS R LT RE L+ +G ++EIA++L +S +TV+ + KLDA N Sbjct: 142 RRSDEGRREELTLRELDVLKRISEGKNTQEIAQELCVSTNTVDTHRRHLMDKLDARNVAD 201 Query: 224 AIAKAIRFGYI 234 I AI G I Sbjct: 202 LIMTAISKGII 212 >gi|110637722|ref|YP_677929.1| response regulator [Cytophaga hutchinsonii ATCC 33406] gi|110280403|gb|ABG58589.1| response regulator [Cytophaga hutchinsonii ATCC 33406] Length = 220 Score = 38.5 bits (88), Expect = 0.77, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE L++ DG + EIA+ LG+S+ T+ + + KL N ++ + AI Sbjct: 160 LTKREKGILKMITDGKNNREIADGLGISIRTIETHRANIMKKLKVKNAVELVRIAI 215 >gi|329947033|ref|ZP_08294445.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328526844|gb|EGF53857.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 219 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Query: 152 ACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +V+ D + ++R+ +LT E L L GDG ++ EI E+LG++ TV + Sbjct: 129 ASGRVLLDERTVTRRRADHDDPTADLTNAERKVLDLIGDGLSNREIGERLGVAEKTVKNH 188 Query: 209 LGSATVKLDAVNRIQAIA 226 + S K+ R Q A Sbjct: 189 ITSLLAKMGLQRRTQVAA 206 >gi|326440245|ref|ZP_08214979.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 224 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 SLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|324997550|ref|ZP_08118662.1| putative GAF sensor protein [Pseudonocardia sp. P1] Length = 380 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 AR LT RE ++L G+T+ +IA L ++ TV A++ KL A NR +A+ + +R Sbjct: 320 ARRLTPRELEVMELMAAGHTNGKIASLLFVTEATVKAHVKHILRKLPAANRAEAVCRYLR 379 >gi|313158965|gb|EFR58342.1| transcriptional regulator, LuxR family [Alistipes sp. HGB5] Length = 251 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 30/51 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L++RE LQL G S+EIA L +S+HTVN + + KL A I+A Sbjct: 190 LSDREKEVLQLISAGKMSKEIAILLSISIHTVNRHRQNILSKLKADTSIEA 240 >gi|284046774|ref|YP_003397114.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950995|gb|ADB53739.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 992 Score = 38.5 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 29/59 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G T+ EI L ++ T + ++ KLD +R QA A A R G Sbjct: 930 LTPRERQVLTLVASGATNREIGSALFMAEKTASVHVSRILAKLDVRSRTQAAAVAHRLG 988 >gi|209521106|ref|ZP_03269835.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209498452|gb|EDZ98578.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 220 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 30/61 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L+L GYT IAEKLGLS TV + K A N +Q A R Sbjct: 150 RQLSAREFEVLRLLVQGYTLPSIAEKLGLSQKTVANHQSVIRQKFGADNGVQLAQMANRL 209 Query: 232 G 232 G Sbjct: 210 G 210 >gi|191638216|ref|YP_001987382.1| Response regulator [Lactobacillus casei BL23] gi|239631678|ref|ZP_04674709.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066277|ref|YP_003788300.1| CitB family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|190712518|emb|CAQ66524.1| Response regulator [Lactobacillus casei BL23] gi|239526143|gb|EEQ65144.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438684|gb|ADK18450.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327382247|gb|AEA53723.1| Two component transcriptional regulator, LuxR family [Lactobacillus casei LC2W] gi|327385444|gb|AEA56918.1| Two component transcriptional regulator, LuxR family [Lactobacillus casei BD-II] Length = 202 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 1/74 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL +A N LT+RE + L G +S++IA L LS TV YL + KL N Sbjct: 128 ELVTNMVTAESNPLTDRELAVLAEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHN 187 Query: 221 RIQAIAKAIRFGYI 234 RI+A+ A + ++ Sbjct: 188 RIEAVQMAKKNKWL 201 >gi|224477373|ref|YP_002634979.1| response regulator of the two-component regulatory [Staphylococcus carnosus subsp. carnosus TM300] gi|81321267|sp|Q7WZY4|NREC_STACT RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|32330234|gb|AAP79640.1| NreC [Staphylococcus carnosus] gi|222421980|emb|CAL28794.1| response regulator of the two-component regulatory [Staphylococcus carnosus subsp. carnosus TM300] Length = 217 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 R L++RE L L GY ++EIAEKL +SV TV A+ KL+ ++ + + A++ Sbjct: 153 RILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYALK 211 >gi|85858068|ref|YP_460270.1| response regulator [Syntrophus aciditrophicus SB] gi|85721159|gb|ABC76102.1| response regulator with a HTH DNA-binding domain [Syntrophus aciditrophicus SB] Length = 216 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE + ++ G GY + +IAEKL LS+ T+ +Y KL + + + AI++ Sbjct: 154 LSNRELTVFRMIGQGYKTSQIAEKLHLSIKTIESYRAHIKEKLKLSDGTELLKYAIQW 211 >gi|16519697|ref|NP_443817.1| LuxR-type activtator protein TraR for conjugal transfer of pNGR234a [Sinorhizobium fredii NGR234] gi|2495425|sp|P55407|TRAR_RHISN RecName: Full=Probable transcriptional activator protein traR gi|7465594|pir||T02771 probable transcription activator traR - Rhizobium sp. plasmid pNGR234a gi|158429605|pdb|2Q0O|A Chain A, Crystal Structure Of An Anti-Activation Complex In Bacterial Quorum Sensing gi|158429606|pdb|2Q0O|B Chain B, Crystal Structure Of An Anti-Activation Complex In Bacterial Quorum Sensing gi|2182351|gb|AAB91637.1| LuxR-type activtator protein TraR for conjugal transfer of pNGR234a [Sinorhizobium fredii NGR234] Length = 236 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA--VNRIQAIAK 227 L+ RE CL A G T+ A G++ TV YL A KLDA V ++ AIAK Sbjct: 176 LSPREMLCLVWASKGKTASVTANLTGINARTVQHYLDKARAKLDAESVPQLVAIAK 231 >gi|320533369|ref|ZP_08034060.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon 171 str. F0337] gi|320134411|gb|EFW26668.1| transcriptional regulator, LuxR family [Actinomyces sp. oral taxon 171 str. F0337] Length = 166 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Query: 152 ACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +V+ D + ++R+ +LT E L L GDG ++ EI E+LG++ TV + Sbjct: 76 ASGRVLLDERTVTRRRADHDDPTADLTNAERKVLDLIGDGLSNREIGERLGVAEKTVKNH 135 Query: 209 LGSATVKLDAVNRIQAIA 226 + S K+ R Q A Sbjct: 136 ITSLLAKMGLQRRTQVAA 153 >gi|308187717|ref|YP_003931848.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans C9-1] gi|308058227|gb|ADO10399.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans C9-1] Length = 209 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY++ SE +L ++ + G + + +L + + R LT RE LQ Sbjct: 103 DGYLLKDSEPEILLGHILQASQGEKVFSEGVARYLANRQHSADPLRQLTGRECDVLQEVA 162 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G +++EIA L +S TV ++ + KLD +R+ A Sbjct: 163 RGLSNKEIAANLHISEETVKVHIRNLLRKLDVRSRVAA 200 >gi|295695307|ref|YP_003588545.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295410909|gb|ADG05401.1| transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 75 Score = 38.5 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L T+ EIAE+L +S TV ++ + KL+ R QA+ + +R G Sbjct: 13 LTAREREVFELLVQDKTTREIAEQLYISEKTVRNHISNVMKKLNVKGRSQAVVELVRMG 71 >gi|320011249|gb|ADW06099.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 230 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 167 QLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEAG 226 >gi|302546395|ref|ZP_07298737.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces hygroscopicus ATCC 53653] gi|302464013|gb|EFL27106.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces himastatinicus ATCC 53653] Length = 223 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+L G ++ EIA +L + TV ++ + KL +R QA+ A G Sbjct: 159 RLSEREADVLRLMAAGLSNAEIAARLTVGPATVKTHVAAVLGKLGVRDRTQAVIAAYECG 218 Query: 233 YI 234 ++ Sbjct: 219 FV 220 >gi|256392793|ref|YP_003114357.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359019|gb|ACU72516.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 884 Score = 38.5 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LTERE L G+++ +IAE L +SV TV ++ A VKL +R Sbjct: 823 LTEREREVAALVAAGHSNRQIAEHLVVSVRTVEGHVYRACVKLGVADR 870 >gi|256393953|ref|YP_003115517.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360179|gb|ACU73676.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 866 Score = 38.5 bits (88), Expect = 0.78, Method: Composition-based stats. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT R+ L L DG+T+ IAE+L +S TV+ ++ + KL A +R A Sbjct: 803 LTRRQHDVLGLIADGHTNARIAEQLFISAKTVDHHVSAILAKLQAPDRAAA 853 >gi|254515691|ref|ZP_05127751.1| transcriptional regulator, LuxR family [gamma proteobacterium NOR5-3] gi|219675413|gb|EED31779.1| transcriptional regulator, LuxR family [gamma proteobacterium NOR5-3] Length = 294 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 32/50 (64%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERET + L G++++ +A++LG+SV TV + A KL+ ++ + Sbjct: 212 LTERETQVINLVLHGHSTKSVAQRLGISVETVKLHRKHAYAKLEVSSQAE 261 >gi|154509006|ref|ZP_02044648.1| hypothetical protein ACTODO_01523 [Actinomyces odontolyticus ATCC 17982] gi|153798640|gb|EDN81060.1| hypothetical protein ACTODO_01523 [Actinomyces odontolyticus ATCC 17982] Length = 204 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%) Query: 152 ACYQVITDFLELFKKR---SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +V+ D L ++R +LT E L L GDG ++ EI EKLG++ TV + Sbjct: 115 ADGRVLLDERTLTRRRVDHEDPTADLTPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNH 174 Query: 209 LGSATVKLDAVNRIQAIA 226 + S K+ R Q A Sbjct: 175 ITSLLSKMGLQRRTQVAA 192 >gi|134103787|ref|YP_001109448.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005755|ref|ZP_06563728.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916410|emb|CAM06523.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 224 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RET L+ G T+ +IA KL +S TV ++ S KL NR++ AI Sbjct: 153 APQLTDRETEVLRQVAKGLTARQIANKLVISHRTVENHVQSTLRKLQLHNRVELARYAIE 212 Query: 231 FG 232 G Sbjct: 213 HG 214 >gi|134100444|ref|YP_001106105.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005077|ref|ZP_06563050.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133913067|emb|CAM03180.1| two component transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] Length = 221 Score = 38.5 bits (88), Expect = 0.78, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LT RE CL+L +G + +A LG+S TV ++ S KL +R++A + A+R Sbjct: 142 ASHLTARERQCLELLVEGAQTRAMARGLGVSSTTVRTHVQSVLTKLGVHSRLEAASFALR 201 >gi|333026039|ref|ZP_08454103.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332745891|gb|EGJ76332.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 220 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERET L G +++EIAEKL ++ TV ++ VKL +R QA Sbjct: 156 ELTERETEVLVHVARGLSNQEIAEKLYVAESTVKTHVSRVLVKLGLRDRTQA 207 >gi|294635449|ref|ZP_06713937.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda ATCC 23685] gi|291091182|gb|EFE23743.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda ATCC 23685] Length = 202 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY++ SE L ++ E H + + ++L + + +LTERE LQ Sbjct: 95 DGYLLKDSEPETLLAQIHQAAEGHNVFSEAVLNYLGTRSEIADPLADLTERELDVLQEVA 154 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 155 RGMSNKQIAAQLHISEETVKVHIRNLLRKLNVRSRVAA 192 >gi|260437679|ref|ZP_05791495.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM 2876] gi|292809905|gb|EFF69110.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM 2876] Length = 218 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 35/59 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +NLT+RE L L GY +++I+ +L ++ TV ++ S K++ +R QA A++ Sbjct: 149 KNLTKREIEVLLLISKGYVNKDISNELKITERTVKNHVSSIFRKINVNDRTQAAVFAVK 207 >gi|241765736|ref|ZP_04763682.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241364396|gb|EER59519.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 301 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 30/58 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RET L G T+ +IA+ LG+S TVN +L KL R A A A +F Sbjct: 239 LTPRETEVLAWLAKGKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRSAATAVASKF 296 >gi|269929142|ref|YP_003321463.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269788499|gb|ACZ40641.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 212 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++EIA +L ++ TV + + KLD R +A++KAI+ G Sbjct: 149 ELTARELDVLTLMARGLRNKEIAYELSITERTVKFHANAIYRKLDVSGRTEAVSKAIQRG 208 Query: 233 YI 234 + Sbjct: 209 LV 210 >gi|72163349|ref|YP_291006.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71917081|gb|AAZ56983.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 221 Score = 38.5 bits (88), Expect = 0.79, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT +E L L G+G T+ +I E+L L+ TV Y+ S KLD R QA Sbjct: 158 LTPQERQILDLIGEGLTNRQIGERLFLAEKTVKNYVSSLLGKLDLKRRTQA 208 >gi|332530099|ref|ZP_08406049.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] gi|332040572|gb|EGI76948.1| two component LuxR family transcriptional regulator [Hylemonella gracilis ATCC 19624] Length = 224 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ RE + L+L G++ EIA +SVHTV ++ + KL +R +A+ +A R Sbjct: 158 APALSAREQAVLELIARGFSYAEIARLQEISVHTVQTHIKNLYQKLAVHSRGEAVFEATR 217 Query: 231 FGYI 234 G + Sbjct: 218 MGLL 221 >gi|293192365|ref|ZP_06609476.1| DNA-binding response regulator VraR [Actinomyces odontolyticus F0309] gi|292820280|gb|EFF79274.1| DNA-binding response regulator VraR [Actinomyces odontolyticus F0309] Length = 204 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%) Query: 152 ACYQVITDFLELFKKR---SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +V+ D L ++R +LT E L L GDG ++ EI EKLG++ TV + Sbjct: 115 ADGRVLLDERTLTRRRVDHEDPTADLTPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNH 174 Query: 209 LGSATVKLDAVNRIQAIA 226 + S K+ R Q A Sbjct: 175 ITSLLSKMGLQRRTQVAA 192 >gi|284042706|ref|YP_003393046.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946927|gb|ADB49671.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 81 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L+L G + IA++LG++ TV +L + +LD NR+QA Sbjct: 20 LTPRELEVLRLVTKGDRTARIAQQLGITEPTVKRHLTNLYRRLDVTNRVQA 70 >gi|153802230|ref|ZP_01956816.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|124122254|gb|EAY40997.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] Length = 214 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 36/60 (60%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ A+ +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 148 QAQASVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 >gi|148550964|ref|YP_001260394.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] gi|148503375|gb|ABQ71627.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 289 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ R+ C+ L G + EI + LGLS TV+ Y+ A + R Q + +A+R G+ Sbjct: 223 LSPRQIDCIDLVAQGKSDWEIGQILGLSRDTVHEYVEGARRRYGVRRRTQLVLRAVRDGH 282 Query: 234 I 234 + Sbjct: 283 L 283 >gi|145592961|ref|YP_001157258.1| two component LuxR family transcriptional regulator [Salinispora tropica CNB-440] gi|145302298|gb|ABP52880.1| two component transcriptional regulator, LuxR family [Salinispora tropica CNB-440] Length = 217 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 29/50 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ERE G G ++ EIA +L +SV TV AY+ KLD NR+Q Sbjct: 157 LSEREREVAIALGRGRSNAEIAGELFMSVATVKAYVSRLLAKLDLNNRVQ 206 >gi|298253881|ref|ZP_06977468.1| response regulator of two-component system [Gardnerella vaginalis 5-1] gi|297532024|gb|EFH70999.1| response regulator of two-component system [Gardnerella vaginalis 5-1] Length = 257 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 38/67 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +SA LT+RE L G +++EIA+KL +S+ TV ++ K+ A +R+QA+ Sbjct: 189 NSAITELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIGARDRVQAVVF 248 Query: 228 AIRFGYI 234 A G + Sbjct: 249 AYENGLV 255 >gi|325677216|ref|ZP_08156882.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325551913|gb|EGD21609.1| LuxR family transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 283 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L G + EIAE+LGL + T+ +Y+ + KL+ +R +A+ +A R G Sbjct: 222 LSRREFEVLAHVALGCRNAEIAERLGLRLDTIKSYMRNIMTKLEVHSRHEAVVEARRQGL 281 Query: 234 I 234 I Sbjct: 282 I 282 >gi|294628486|ref|ZP_06707046.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces sp. e14] gi|292831819|gb|EFF90168.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces sp. e14] Length = 231 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 31/60 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 >gi|288922546|ref|ZP_06416727.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288346101|gb|EFC80449.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 952 Score = 38.5 bits (88), Expect = 0.80, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 30/53 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT E + LA DG+T+ +IAE+L LS TV +L A K+ +R Q A Sbjct: 876 LTPAERTAAGLAADGFTNRQIAEQLFLSEKTVETHLSRAYRKVGVRSRTQLAA 928 >gi|257067834|ref|YP_003154089.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558652|gb|ACU84499.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 211 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +ET LQ G ++ +IA+ L LS TV +L + KL NR +A+ A G+ Sbjct: 151 LTAKETEVLQTVATGASTAQIAQTLFLSEGTVRNHLSAVIGKLGVTNRAEAVRAASDNGW 210 Query: 234 I 234 I Sbjct: 211 I 211 >gi|226315402|ref|YP_002775298.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] gi|226098352|dbj|BAH46794.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] Length = 596 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE LQL DG + IA KL LS TV Y + KL NR +AI A Sbjct: 536 LTKREREILQLLSDGLRYKSIATKLYLSEGTVRNYCSTLYSKLGVSNREEAIELA 590 >gi|223934791|ref|ZP_03626711.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896746|gb|EEF63187.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 211 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ RE L+ +G ++IA+KLG+S+HTV Y+ KL + QA+A+ R Sbjct: 153 ELSPREREVLEGLAEGCAYKQIADKLGVSIHTVRNYIRRIYEKLHVRSSSQAVARYYR 210 >gi|29654109|ref|NP_819801.1| LuxR family DNA-binding response regulator [Coxiella burnetii RSA 493] gi|153208494|ref|ZP_01946778.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat Q177'] gi|154707387|ref|YP_001424215.1| response regulator [Coxiella burnetii Dugway 5J108-111] gi|212218270|ref|YP_002305057.1| response regulator [Coxiella burnetii CbuK_Q154] gi|29541375|gb|AAO90315.1| response regulator [Coxiella burnetii RSA 493] gi|120575950|gb|EAX32574.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat Q177'] gi|154356673|gb|ABS78135.1| response regulator [Coxiella burnetii Dugway 5J108-111] gi|212012532|gb|ACJ19912.1| response regulator [Coxiella burnetii CbuK_Q154] Length = 216 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 10/131 (7%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFK 165 +EG LLP + VR G++ +S+ L + G Y I L L K Sbjct: 84 MEGELLPMRLLDVGVR------GFITKSSDSGELERAIRAVHSGQRYISSAIASRLALSK 137 Query: 166 KRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + L+ R+ L L G +EEIA++L ++ TVN++ KL N ++ Sbjct: 138 TTPTKSPFDQLSHRQMEVLLLLAKGMKAEEIAKQLHITAKTVNSHRYRMFDKLGVKNDVE 197 Query: 224 AIAKAIRFGYI 234 I A+++G I Sbjct: 198 LIKLAVQYGVI 208 >gi|260060932|ref|YP_003194012.1| LuxR family transcriptional regulator [Robiginitalea biformata HTCC2501] gi|88785064|gb|EAR16233.1| transcriptional regulator, LuxR family protein [Robiginitalea biformata HTCC2501] Length = 139 Score = 38.5 bits (88), Expect = 0.80, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G ++ EIA++L +S TV ++ + VKLD R Q I KA Sbjct: 73 GLTPRECEVLLPLCKGLSNREIADELHISESTVKTHVSNLLVKLDVRRRTQVIRKA 128 >gi|313149427|ref|ZP_07811620.1| response regulator receiver protein [Bacteroides fragilis 3_1_12] gi|313138194|gb|EFR55554.1| response regulator receiver protein [Bacteroides fragilis 3_1_12] Length = 251 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 2/68 (2%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA- 224 ++ ++ L++RE + LQL G TS EIA +L +S +TV+ + + KL N I+A Sbjct: 182 EKQDCSKLLSDREKTILQLIDMGKTSHEIARELFISKNTVSRHRQNILEKLQVKNSIEAC 241 Query: 225 -IAKAIRF 231 IAK ++ Sbjct: 242 RIAKELKL 249 >gi|326773634|ref|ZP_08232917.1| DNA-binding response regulator, LuxR family [Actinomyces viscosus C505] gi|326636864|gb|EGE37767.1| DNA-binding response regulator, LuxR family [Actinomyces viscosus C505] Length = 217 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Query: 152 ACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +V+ D + ++R+ +LT E L L GDG ++ EI E+LG++ TV + Sbjct: 127 ASGRVLLDERTVTRRRADHDDPTADLTNAERKVLDLIGDGLSNREIGERLGVAEKTVKNH 186 Query: 209 LGSATVKLDAVNRIQAIA 226 + S K+ R Q A Sbjct: 187 ITSLLAKMGLQRRTQVAA 204 >gi|301385893|ref|ZP_07234311.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato Max13] gi|302061837|ref|ZP_07253378.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato K40] gi|302130857|ref|ZP_07256847.1| LuxR family regulatory protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 149 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+ DG T E I + LG++ TV + + KL+A N+ A KA G Sbjct: 89 LSTREVEVLKWVADGKTGEVIGKVLGVTERTVTHHTVNIMQKLNATNKTAAAVKAALLGI 148 Query: 234 I 234 I Sbjct: 149 I 149 >gi|297571014|ref|YP_003696788.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum DSM 20595] gi|296931361|gb|ADH92169.1| two component transcriptional regulator, LuxR family [Arcanobacterium haemolyticum DSM 20595] Length = 230 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 37/75 (49%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 TD + L + +LT+RE L G T+ EIA++L ++ TV ++ KL Sbjct: 147 TDSIRLHASKPEVLDDLTDREREVFYLIARGLTNTEIADRLYVAEATVKTHVTRIFAKLG 206 Query: 218 AVNRIQAIAKAIRFG 232 +R+QA+ A G Sbjct: 207 VRDRVQAVVIAYEAG 221 >gi|256839247|ref|ZP_05544757.1| transcriptional regulator [Parabacteroides sp. D13] gi|262382307|ref|ZP_06075444.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|301308485|ref|ZP_07214439.1| putative transcriptional regulator, LuxR family [Bacteroides sp. 20_3] gi|256740166|gb|EEU53490.1| transcriptional regulator [Parabacteroides sp. D13] gi|262295185|gb|EEY83116.1| transcriptional regulator [Bacteroides sp. 2_1_33B] gi|300833955|gb|EFK64571.1| putative transcriptional regulator, LuxR family [Bacteroides sp. 20_3] Length = 193 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 156 VITDFLELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +I +LF SS ++L+ RE LQL G T++EIA+KL +S++TV + Sbjct: 102 IIEQLQQLFTSDSSGNTTTENNKDLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHR 161 Query: 210 GSATVKL 216 + T KL Sbjct: 162 KNITAKL 168 >gi|258516863|ref|YP_003193085.1| two component transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257780568|gb|ACV64462.1| two component transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 216 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 7/104 (6%) Query: 129 NGYVI--FTSEFLMLA-----NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 +GY++ T+E L++A N + ++I E KK S LT+RE Sbjct: 101 DGYLLKDMTAEKLVVAIRNAFNGNVTMPASIASRIIVHIHEDVKKNSLQDYGLTQREIEI 160 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L G+++E I+ LG+S+ TV Y+ KL+A +R +AI Sbjct: 161 AGLMARGFSNELISITLGISLGTVKNYISVIYSKLEANSRQEAI 204 >gi|281421139|ref|ZP_06252138.1| transcriptional regulator [Prevotella copri DSM 18205] gi|281404674|gb|EFB35354.1| transcriptional regulator [Prevotella copri DSM 18205] Length = 212 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT+ ET L+ G T++EIAEK S HTVN + + KL N +A A+R G Sbjct: 144 NLTKTETEILKDIALGMTTKEIAEKRFSSFHTVNTHRKNIFRKLGVNNVHEATKYALRAG 203 Query: 233 YI 234 + Sbjct: 204 LV 205 >gi|297191286|ref|ZP_06908684.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718427|gb|EDY62335.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 218 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T+RE L L G G ++ EIAE L +SV T Y+ KL A +R++ + A G Sbjct: 153 GITDREREVLTLVGSGLSNSEIAEALFISVATAKTYVTRLLSKLGARDRVRLVIIAYETG 212 Query: 233 YIC 235 + Sbjct: 213 LVS 215 >gi|168698046|ref|ZP_02730323.1| response regulator receiver [Gemmata obscuriglobus UQM 2246] Length = 232 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 4/110 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERETSCLQL 184 GYV+ S L + A G Y +L + ++A A L++RE L+L Sbjct: 101 RGYVLKRSAAEELVQALRAVAAGGVYLEPRLAAQLAEGPAAAPPDSAEALSQREHEVLRL 160 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY ++EI +L +SV TV Y KL+ +R++ + A G++ Sbjct: 161 LALGYANKEIGARLRISVKTVETYKTRGMEKLNLRSRVELVRYAFERGWL 210 >gi|150010404|ref|YP_001305147.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] gi|149938828|gb|ABR45525.1| transcriptional regulator [Parabacteroides distasonis ATCC 8503] Length = 193 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%) Query: 156 VITDFLELFKKRSSAA------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +I +LF SS ++L+ RE LQL G T++EIA+KL +S++TV + Sbjct: 102 IIEQLQQLFTSDSSGNTTTENNKDLSSREVDVLQLIVKGITNKEIADKLNISLNTVLTHR 161 Query: 210 GSATVKL 216 + T KL Sbjct: 162 KNITAKL 168 >gi|170743785|ref|YP_001772440.1| two component LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168198059|gb|ACA20006.1| two component transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 220 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RET L+ G++++EIA +L +SV TV Y A KL R A +RFG Sbjct: 151 DLSPRETEVLRHTAQGFSNKEIALRLDVSVKTVETYKARAAEKLHLRTR----ADIVRFG 206 >gi|146318597|ref|YP_001198309.1| DNA-binding response regulator, [Streptococcus suis 05ZYH33] gi|146320797|ref|YP_001200508.1| DNA-binding response regulator [Streptococcus suis 98HAH33] gi|253751721|ref|YP_003024862.1| response regulator protein [Streptococcus suis SC84] gi|145689403|gb|ABP89909.1| DNA-binding response regulator, putative [Streptococcus suis 05ZYH33] gi|145691603|gb|ABP92108.1| DNA-binding response regulator, putative [Streptococcus suis 98HAH33] gi|251816010|emb|CAZ51628.1| response regulator protein [Streptococcus suis SC84] Length = 199 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G+G ++IA+ L +S T+ ++ + KL+ + ++A+ KA + GY Sbjct: 138 LTEREKEILIHLGNGEKRKDIAKSLYISDRTLTNHIQNILEKLEVDSTLKAVIKAQKLGY 197 Query: 234 I 234 I Sbjct: 198 I 198 >gi|260907087|ref|ZP_05915409.1| two component transcriptional regulator, LuxR family protein [Brevibacterium linens BL2] Length = 231 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L G +++EIA+ +S TV +L +KLD NR+ R G Sbjct: 161 DLTERELEIAILVAQGLSNQEIADATFMSTATVKTHLNRINIKLDTSNRVHIAVAVERAG 220 >gi|15599391|ref|NP_252885.1| BfiR [Pseudomonas aeruginosa PAO1] gi|9950407|gb|AAG07583.1|AE004836_2 BfiR [Pseudomonas aeruginosa PAO1] Length = 214 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L GYTS E+AE+L +SV TV+ Y ++ A + + AI G Sbjct: 144 SLTPRERDVLLPLVRGYTSREVAEQLEVSVKTVDLYRARVMKRMQAQTLPELVGMAIAAG 203 Query: 233 YI 234 + Sbjct: 204 LV 205 >gi|89098035|ref|ZP_01170921.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89087198|gb|EAR66313.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 210 Score = 38.5 bits (88), Expect = 0.81, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 29/50 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE +L G G T++EIA +L LSV TV +L KLD +R Q Sbjct: 150 LTPRERDIARLIGHGKTNKEIANELYLSVGTVKNHLTQILQKLDLRDRTQ 199 >gi|331699447|ref|YP_004335686.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954136|gb|AEA27833.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 211 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R + L+ RE ++ G T+ EIA L +S+ TV +L + KL A NR++ Sbjct: 142 PRPTLPEPLSPREIDVVRAVARGRTNAEIAADLFVSLSTVKTHLTNVQAKLGARNRVEVA 201 Query: 226 AKAIRFGYI 234 A A G + Sbjct: 202 AWAWEHGLV 210 >gi|228991209|ref|ZP_04151167.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442] gi|228768433|gb|EEM17038.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442] Length = 438 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 4/76 (5%) Query: 163 LFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LFK+ SS + LT RE L +G +EIA KL LS TV Y S +KL Sbjct: 363 LFKEYSSMPKKPPYELTPREMDVLGCLKEGLRYKEIAAKLFLSEGTVRNYASSIYMKLQV 422 Query: 219 VNRIQAIAKAIRFGYI 234 R +A+ KA+ ++ Sbjct: 423 SGRGEAVKKALDEAFL 438 >gi|229164821|ref|ZP_04292645.1| Response regulator receiver [Bacillus cereus R309803] gi|228618645|gb|EEK75647.1| Response regulator receiver [Bacillus cereus R309803] Length = 221 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 32/60 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE LQL G + EIA+ L +S TV ++ KL+ +R QA AIR Sbjct: 157 AEALTKREIDVLQLLAYGKQNHEIAKILCVSEGTVKTHIHKILQKLEVTDRTQAAVMAIR 216 >gi|297561725|ref|YP_003680699.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846173|gb|ADH68193.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 219 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%) Query: 167 RSSAARNLT---ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R+ A R L+ ERE S L G ++ E LG+ TV A++ KLD NR+Q Sbjct: 149 RAEAVRRLSVLSERERSVLLAVARGRSNAEAGRDLGMREATVKAHVSRILAKLDMSNRVQ 208 Query: 224 A 224 A Sbjct: 209 A 209 >gi|297203955|ref|ZP_06921352.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197713149|gb|EDY57183.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 894 Score = 38.5 bits (88), Expect = 0.82, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 32/57 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + L+ERE LQ ++EEIA L LSV+TV +L S KL R +A+ +A Sbjct: 832 QELSERERDVLQRLAQMMSTEEIAVDLYLSVNTVKTHLKSLYRKLAVNRRSEAVHRA 888 >gi|333025269|ref|ZP_08453333.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332745121|gb|EGJ75562.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 233 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L L G ++ IAE+LGLS TV AY+ +L NR++A Sbjct: 168 LTPREREVLVLLAGGLSNAGIAERLGLSEGTVKAYVSVVLDRLGVPNRVRA 218 >gi|312141565|ref|YP_004008901.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311890904|emb|CBH50223.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 283 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L G + EIAE+LGL + T+ +Y+ + KL+ +R +A+ +A R G Sbjct: 222 LSRREFEVLAHVALGCRNAEIAERLGLRLDTIKSYMRNIMTKLEVHSRHEAVVEARRQGL 281 Query: 234 I 234 I Sbjct: 282 I 282 >gi|297157878|gb|ADI07590.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 222 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L G G+T+ EIA++L ++ TV ++G K+ +R+QA+ Sbjct: 159 LTGREREVLTAIGRGWTNGEIAQRLVVAESTVKTHVGRILAKIGGRDRVQAV 210 >gi|260900449|ref|ZP_05908844.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AQ4037] gi|308106954|gb|EFO44494.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AQ4037] gi|328470949|gb|EGF41860.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus 10329] Length = 210 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 7/123 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAAR 172 A I VR G +GY++ +E L E++ +AH A Q + +L Sbjct: 90 ADIEAIVRSG--ADGYLLKDTEPDELV-ELLKQAHQGDKAYSQEVAKYLSERSDHEDVFD 146 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-RF 231 +LT+RET L+ G+ +++IA++L +S TV ++ S KL +R A + RF Sbjct: 147 SLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERF 206 Query: 232 GYI 234 G I Sbjct: 207 GDI 209 >gi|153837120|ref|ZP_01989787.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AQ3810] gi|149749537|gb|EDM60283.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AQ3810] Length = 212 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 7/123 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAAR 172 A I VR G +GY++ +E L E++ +AH A Q + +L Sbjct: 92 ADIEAIVRSG--ADGYLLKDTEPDELV-ELLKQAHQGDKAYSQEVAKYLSERSDHEDVFD 148 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-RF 231 +LT+RET L+ G+ +++IA++L +S TV ++ S KL +R A + RF Sbjct: 149 SLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERF 208 Query: 232 GYI 234 G I Sbjct: 209 GDI 211 >gi|28901050|ref|NP_800705.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus RIMD 2210633] gi|28809563|dbj|BAC62538.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus RIMD 2210633] Length = 208 Score = 38.5 bits (88), Expect = 0.82, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 7/123 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAAR 172 A I VR G +GY++ +E L E++ +AH A Q + +L Sbjct: 88 ADIEAIVRSG--ADGYLLKDTEPDELV-ELLKQAHQGDKAYSQEVAKYLSERSDHEDVFD 144 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-RF 231 +LT+RET L+ G+ +++IA++L +S TV ++ S KL +R A + RF Sbjct: 145 SLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERF 204 Query: 232 GYI 234 G I Sbjct: 205 GDI 207 >gi|332670939|ref|YP_004453947.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332339977|gb|AEE46560.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 218 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 NLT E L L G+G ++ EIAE+LG++ TV ++ S K+ R Q A Sbjct: 149 NLTPSELRVLDLIGEGLSNREIAERLGVAEKTVKNHITSLLAKMGLQRRTQVAA 202 >gi|329767843|ref|ZP_08259358.1| hypothetical protein HMPREF0428_01055 [Gemella haemolysans M341] gi|328838762|gb|EGF88359.1| hypothetical protein HMPREF0428_01055 [Gemella haemolysans M341] Length = 205 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 12/97 (12%) Query: 118 IAFPVRLGFHKNGYVIFTS---EFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAA 171 I +RLG +GYV ++ E L ++VI++ Y I F ELFK+ Sbjct: 89 IKKALRLG--ASGYVTKSTAHEEILQAIDKVIVKDEIYLNDKYATI--FYELFKEDKEI- 143 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 L+ERE + +GYT +I EKL LSV TV+ Y Sbjct: 144 -ELSEREKEVGRYIVEGYTLTDIGEKLFLSVKTVDTY 179 >gi|326330805|ref|ZP_08197106.1| regulatory protein, LuxR:Response regulator receiver [Nocardioidaceae bacterium Broad-1] gi|325951335|gb|EGD43374.1| regulatory protein, LuxR:Response regulator receiver [Nocardioidaceae bacterium Broad-1] Length = 228 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE G G ++ EIA++L LS+ TV A++ KL A NR+Q Sbjct: 168 LTEREHEVALAVGRGLSNAEIAKELYLSIPTVKAHVSRLFDKLGATNRVQ 217 >gi|283781707|ref|YP_003372462.1| two component LuxR family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283440160|gb|ADB18602.1| two component transcriptional regulator, LuxR family [Pirellula staleyi DSM 6068] Length = 211 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G T+++IAE LG+S TV ++ K+ +R QA A+R G Sbjct: 151 LTQREGEVLKHVCSGRTNQQIAELLGISYETVKEHVQHLLEKIGVADRTQAAIWAVRAG 209 >gi|302561087|ref|ZP_07313429.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] gi|302478705|gb|EFL41798.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] Length = 230 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 165 APRLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 224 Query: 231 FG 232 G Sbjct: 225 RG 226 >gi|302520212|ref|ZP_07272554.1| two-component system response regulator [Streptomyces sp. SPB78] gi|318062155|ref|ZP_07980876.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|302429107|gb|EFL00923.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 224 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERET L G +++EIAEKL ++ TV ++ VKL +R QA Sbjct: 160 ELTERETEVLVHVARGLSNQEIAEKLYVAESTVKTHVSRVLVKLGLRDRTQA 211 >gi|254820469|ref|ZP_05225470.1| LuxR family transcriptional regulator [Mycobacterium intracellulare ATCC 13950] Length = 499 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 5/76 (6%) Query: 162 ELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 E KRS N LT +E +LAG+G T+ EIA +L +S HTV +L KL Sbjct: 419 EKVNKRSGKTGNASGGELTAQEAQIARLAGEGLTNPEIAAQLFISSHTVEWHLRKVFAKL 478 Query: 217 DAVNRIQAIAKAIRFG 232 +R Q A FG Sbjct: 479 GITSRRQLRGLAKEFG 494 >gi|29831224|ref|NP_825858.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608339|dbj|BAC72393.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 223 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE + L G ++ EIA +L LS TV ++G KL +R+Q + A G Sbjct: 156 RLTDREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETG 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|62182110|ref|YP_218527.1| putative transcriptional regulator (LuxR/UhpA familiy) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62129743|gb|AAX67446.1| putative transcriptional regulator (LuxR/UhpA familiy) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716598|gb|EFZ08169.1| Putative HTH-type transcriptional regulator yhjB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 185 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D+L + S + L+ R+ LQ+ G ++++I L +S TV A+L S +LD Sbjct: 112 DWLNSTELESRDIKALSARQREILQMLAAGESNKQIGRALNISTGTVKAHLESLYRRLDV 171 Query: 219 VNRIQA 224 NR QA Sbjct: 172 KNRTQA 177 >gi|26990263|ref|NP_745688.1| LuxR family DNA-binding response regulator [Pseudomonas putida KT2440] gi|148547444|ref|YP_001267546.1| response regulator receiver protein [Pseudomonas putida F1] gi|24985212|gb|AAN69152.1|AE016549_1 DNA-binding response regulator, LuxR family [Pseudomonas putida KT2440] gi|148511502|gb|ABQ78362.1| response regulator receiver protein [Pseudomonas putida F1] Length = 210 Score = 38.5 bits (88), Expect = 0.83, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE G + EIAE+LG+SV TV+ Y G +L A + + + AI G Sbjct: 141 GLTPRERDVFVPLAQGLNNREIAEQLGISVKTVDLYRGRVMKRLQAGSLAELVGMAIACG 200 Query: 233 YI 234 + Sbjct: 201 AV 202 >gi|259046510|ref|ZP_05736911.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259036675|gb|EEW37930.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 211 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 39/71 (54%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K++ +LT+RE L L G +++EIA++L +++ TV ++ + KL+ +R Q Sbjct: 139 MKQQHFPHDDLTQRELEVLLLIAQGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQ 198 Query: 224 AIAKAIRFGYI 234 A A + I Sbjct: 199 ATIYAFKHQLI 209 >gi|271962079|ref|YP_003336275.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505254|gb|ACZ83532.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 212 Score = 38.5 bits (88), Expect = 0.84, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G ++ EIA +L ++ TV ++ + +KL +R QA A+R G Sbjct: 152 LTDREREVLTLIASGRSNREIARELAVAEKTVKTHVSNVLMKLGVQDRTQAALYAVRNG 210 >gi|325068498|ref|ZP_08127171.1| two component transcriptional regulator, LuxR family protein [Actinomyces oris K20] Length = 205 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Query: 152 ACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +V+ D + ++R+ +LT E L L GDG ++ EI E+LG++ TV + Sbjct: 115 ASGRVLLDERTVTRRRADHDDPTADLTNAERKVLDLIGDGLSNREIGERLGVAEKTVKNH 174 Query: 209 LGSATVKLDAVNRIQAIA 226 + S K+ R Q A Sbjct: 175 ITSLLAKMGLQRRTQVAA 192 >gi|307322284|ref|ZP_07601649.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306892066|gb|EFN22887.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 255 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RET L L G ++ IA++LGLS +TV ++ + K++ NR +A A+ R Sbjct: 186 LTMRETQILDLICVGMQNKIIADRLGLSENTVKVHVRNIYKKMNVRNRTEAAARYFR 242 >gi|306841639|ref|ZP_07474330.1| two component LuxR family transcriptional regulator [Brucella sp. BO2] gi|306288280|gb|EFM59656.1| two component LuxR family transcriptional regulator [Brucella sp. BO2] Length = 234 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L +G + +IAE+L LS HT+ A++ + KL +R QA A + G Sbjct: 172 GLSPRENEILRLVSEGLGNRDIAEQLFLSRHTIEAHIKNIYRKLAVSSRTQAAQAARQRG 231 Query: 233 YI 234 + Sbjct: 232 LL 233 >gi|269795009|ref|YP_003314464.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269097194|gb|ACZ21630.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 907 Score = 38.5 bits (88), Expect = 0.85, Method: Composition-based stats. Identities = 23/52 (44%), Positives = 30/52 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 A LT RE LAG G ++ +IA +L LSV TV ++L A KL A +R Sbjct: 845 AEEPLTAREREVAVLAGRGLSNRDIAARLFLSVRTVESHLYLARRKLGAASR 896 >gi|238059474|ref|ZP_04604183.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237881285|gb|EEP70113.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 204 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 3/94 (3%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 LAN V A G + + D S A LT RE L+ A +G +EIA +L L Sbjct: 114 LANAVRTTAAG---ERVIDPCAAVAVLSPPANPLTRREREVLREAAEGVPLKEIARRLFL 170 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + TV +L + K A NR++A+ A G++ Sbjct: 171 AHGTVRNHLSAIMHKTGARNRMEAVRLAQHEGWL 204 >gi|149914863|ref|ZP_01903392.1| 3-dehydroquinate dehydratase [Roseobacter sp. AzwK-3b] gi|149811051|gb|EDM70888.1| 3-dehydroquinate dehydratase [Roseobacter sp. AzwK-3b] Length = 252 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ R LT R+ L GDG T ++IA +GL+ TV +L A L+ QA+ K Sbjct: 181 TTKGRTLTRRQREVLAWVGDGKTIQDIAVLMGLTPATVEKHLRLARDSLNVETTAQAVLK 240 Query: 228 A 228 A Sbjct: 241 A 241 >gi|159037162|ref|YP_001536415.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157915997|gb|ABV97424.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 212 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 32/60 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++LTE+E L+ +G T+ EIA K+ L+ TV Y+ S KL R QA A R Sbjct: 148 KSLTEQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSMLAKLGLERRTQAAVLATRL 207 >gi|21220150|ref|NP_625929.1| two-component response regulator [Streptomyces coelicolor A3(2)] gi|256788738|ref|ZP_05527169.1| two-component response regulator [Streptomyces lividans TK24] gi|289772632|ref|ZP_06532010.1| two-component system response regulator [Streptomyces lividans TK24] gi|6119696|emb|CAB59507.1| putative two-component response regulator [Streptomyces coelicolor A3(2)] gi|289702831|gb|EFD70260.1| two-component system response regulator [Streptomyces lividans TK24] Length = 223 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|330467964|ref|YP_004405707.1| two-component system response regulator [Verrucosispora maris AB-18-032] gi|328810935|gb|AEB45107.1| two-component system response regulator [Verrucosispora maris AB-18-032] Length = 203 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G ++A KL L+ TV YL + K+ A NR+ AI A G+ Sbjct: 141 LTERERDVLTHVAKGSDVSDVAAKLYLAPGTVRNYLSAIMSKIGARNRVDAIRIARDRGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|297623722|ref|YP_003705156.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164902|gb|ADI14613.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 226 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 167 RSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+S R LT RET L+ G G +++EIA LGLS TV ++ KL +R QA Sbjct: 155 RTSDMREALTARETDILRHIGRGESNKEIAAALGLSELTVKTHVSRLLSKLGLASRTQAA 214 Query: 226 AKAIRFGYIC 235 A++ G + Sbjct: 215 LFALKEGLVS 224 >gi|297162710|gb|ADI12422.1| putative luxR family two-component response regulator [Streptomyces bingchenggensis BCW-1] Length = 233 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA--IAKAIR 230 L+ RE L+L G+G T+ +IAE+L L+ TV + + KL RIQA IA+ IR Sbjct: 168 RLSPREREILELIGEGLTNRQIAERLFLAEKTVKNRISTILSKLGVGRRIQAAVIAERIR 227 >gi|271966618|ref|YP_003340814.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509793|gb|ACZ88071.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 220 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+L ++ EIAE+L L+ TV ++ + KL +R+QA+ A G Sbjct: 154 RLSEREVEVLRLVALALSNAEIAERLVLTEATVKTHVSAVLRKLGLRDRVQAVVLAYDVG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|260913467|ref|ZP_05919945.1| maltose regulon activator MalT [Pasteurella dagmatis ATCC 43325] gi|260632407|gb|EEX50580.1| maltose regulon activator MalT [Pasteurella dagmatis ATCC 43325] Length = 897 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 34/52 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L L GY++E+I+E+L ++ T+ ++ + K++ +NR +AI Sbjct: 833 LTQREWQVLGLIYSGYSNEQISEELQVATTTIKTHIRNLYQKINVMNRNEAI 884 >gi|260362480|ref|ZP_05775413.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus K5030] gi|260894575|ref|ZP_05903071.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus Peru-466] gi|308094902|ref|ZP_05892254.2| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AN-5034] gi|308086485|gb|EFO36180.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus Peru-466] gi|308092124|gb|EFO41819.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AN-5034] gi|308113367|gb|EFO50907.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus K5030] Length = 210 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 7/123 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAAR 172 A I VR G +GY++ +E L E++ +AH A Q + +L Sbjct: 90 ADIEAIVRSG--ADGYLLKDTEPDELV-ELLKQAHQGDKAYSQEVAKYLSERSDHEDVFD 146 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-RF 231 +LT+RET L+ G+ +++IA++L +S TV ++ S KL +R A + RF Sbjct: 147 SLTDRETQILREVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERF 206 Query: 232 GYI 234 G I Sbjct: 207 GDI 209 >gi|239982955|ref|ZP_04705479.1| LuxR family two-component response regulator [Streptomyces albus J1074] gi|291454789|ref|ZP_06594179.1| luxR family two-component system response regulator [Streptomyces albus J1074] gi|291357738|gb|EFE84640.1| luxR family two-component system response regulator [Streptomyces albus J1074] Length = 237 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 32/59 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L+L G+G T+ EIAE+L L+ TV + + KL RIQA A R Sbjct: 174 RLSPREREILELIGEGLTNREIAERLYLAEKTVKNRISAILSKLGVGRRIQAAMIAGRL 232 >gi|288572878|ref|ZP_06391235.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568619|gb|EFC90176.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 216 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 29/60 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL +G ++ EIA L LS TV + S KLD N AIR G Sbjct: 150 ELTPREWEILQLVAEGRSTREIASSLNLSAKTVENHRQSVMNKLDLHNVADLTKYAIRCG 209 >gi|212212758|ref|YP_002303694.1| response regulator [Coxiella burnetii CbuG_Q212] gi|212011168|gb|ACJ18549.1| response regulator [Coxiella burnetii CbuG_Q212] Length = 216 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 10/131 (7%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFK 165 +EG LLP + VR G++ +S+ L + G Y I L L K Sbjct: 84 MEGELLPMRLLDVGVR------GFITKSSDSGELERAIRAVHSGQRYISSAIASRLALSK 137 Query: 166 KRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + L+ R+ L L G +EEIA++L ++ TVN++ KL N ++ Sbjct: 138 TTPTKSPFDQLSHRQMEVLLLLAKGMKAEEIAKQLHITAKTVNSHRYRMFDKLGVKNDVE 197 Query: 224 AIAKAIRFGYI 234 I A+++G I Sbjct: 198 LIKLAVQYGVI 208 >gi|254383353|ref|ZP_04998705.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194342250|gb|EDX23216.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 219 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NLT++E L L G+G T+ I E+L L+ T+ Y+ S KL R QA A R Sbjct: 156 NLTDQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVARL 214 >gi|182439643|ref|YP_001827362.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780308|ref|ZP_08239573.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178468159|dbj|BAG22679.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660641|gb|EGE45487.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 223 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 33/67 (49%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA Sbjct: 152 PDALHTLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVY 211 Query: 228 AIRFGYI 234 A G + Sbjct: 212 AYESGLV 218 >gi|270308742|ref|YP_003330800.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270154634|gb|ACZ62472.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 238 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LT+RE + L L GY++++I +KL + TV Y+ + KL NR Q Sbjct: 177 DLTDRERTILNLLAKGYSNKDIGQKLDYTQTTVKKYVYNCMKKLGVSNRTQ 227 >gi|85712393|ref|ZP_01043443.1| Response regulator, LuxR family protein (CheY, HTH domains) [Idiomarina baltica OS145] gi|85693836|gb|EAQ31784.1| Response regulator, LuxR family protein (CheY, HTH domains) [Idiomarina baltica OS145] Length = 216 Score = 38.5 bits (88), Expect = 0.85, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 35/69 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 KR + L++RE +Q+ G G EIAE L +S T+N + KL+ + +Q Sbjct: 140 KRRNIVEQLSDRELQVMQMIGRGVRVSEIAEHLCISSKTINTFRYRIFAKLNINSDVQLS 199 Query: 226 AKAIRFGYI 234 A+R G + Sbjct: 200 HLALRAGLV 208 >gi|328885169|emb|CCA58408.1| transcriptional regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 327 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 12/113 (10%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSSAARNLTERETSC 181 G + ++F+S+ ++LA + EA H + D L LT +E Sbjct: 224 GQARPSALLFSSQPVVLAMRALFEAYWEHASPLDGPGDAL---------PGGLTPQERKL 274 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQL G T E +A LG+ V T + +L A +R +A +A R +I Sbjct: 275 LQLLASGLTDEAVARALGIGVRTERRIVADLMERLGASSRFEAGVQATRREWI 327 >gi|302553186|ref|ZP_07305528.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470804|gb|EFL33897.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 223 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE + L G ++ EIA +L LS TV ++G KL +R+Q + A G Sbjct: 156 RLTDREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETG 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|256395178|ref|YP_003116742.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361404|gb|ACU74901.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 8/101 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN-----LTERETS 180 GYV + LA+ V A G + ++ L+ F +AAR+ LT RE Sbjct: 113 RGYVTKSISGAELADAVRRVADGDAFFSPRLAGFVLDAFASGGAAARDEELDRLTPRERE 172 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+ GY +E+A +L +S+ TV ++ S KL NR Sbjct: 173 VLRFIARGYAYKEVARELVISIKTVETHVSSVLRKLQLSNR 213 >gi|212716971|ref|ZP_03325099.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM 16992] gi|212660256|gb|EEB20831.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM 16992] Length = 248 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ Sbjct: 188 LTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAV 239 >gi|106879455|emb|CAJ20008.1| putative DNA binding regulatory protein [Streptomyces cattleya] Length = 234 Score = 38.5 bits (88), Expect = 0.86, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE + L G + +IA +L ++ TV +L + KLDA R +A+ KA+ G Sbjct: 162 LTARELQVVALVARGLRNSQIARELVITEGTVKRHLSNVYAKLDAACRTEAVRKAVERGM 221 Query: 234 I 234 + Sbjct: 222 V 222 >gi|238062942|ref|ZP_04607651.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237884753|gb|EEP73581.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 217 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%) Query: 155 QVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 QVI R++ AR LT+RE L L G G ++ +IA +L L TV ++ Sbjct: 132 QVIGRLRATGLGRAAEARAKVQQLTDRERDVLALVGAGLSNAQIARRLHLVEGTVKGHVS 191 Query: 211 SATVKLDAVNRIQAIAKAIRFGYIC 235 + +L NR+QA A G + Sbjct: 192 TILARLGLANRVQAAVLAHEAGLVT 216 >gi|196229817|ref|ZP_03128681.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226143|gb|EDY20649.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 210 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ERE LQ G +++EIA L ++ TV ++G+ KL +R QA AI+ Sbjct: 145 RELSEREIEVLQRIVKGLSNKEIAGHLFITEATVKLHVGNILTKLGVQDRTQASTVAIQR 204 Query: 232 GYI 234 G + Sbjct: 205 GIV 207 >gi|196231881|ref|ZP_03130737.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196224003|gb|EDY18517.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 195 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 37/66 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +AA +LT+RE + LQ+ +G +++E+AE++ ++ TV + KL + A Sbjct: 126 TAASHLTDRERAILQMIAEGMSNKEMAERISIAPKTVEHHRAQVMQKLGMHDVATLTRYA 185 Query: 229 IRFGYI 234 +R G + Sbjct: 186 VRMGLV 191 >gi|167567132|ref|ZP_02360048.1| probable two-component response regulator, LuxR family protein [Burkholderia oklahomensis EO147] Length = 216 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 6/108 (5%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQL 184 NGY++ S L + + G + VI L + + + A + LT RE L+L Sbjct: 109 NGYLLKNSSKQTLLDAIWKVWRG--HTVIDPALNVDQVTTKAVPDGAVALTPRERQVLKL 166 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +G + +IAEKL +++ TV + + KLDA N + A R G Sbjct: 167 ISEGCRNRDIAEKLTITIKTVETHRLNLMRKLDAHNAAELANWAHRLG 214 >gi|241203502|ref|YP_002974598.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857392|gb|ACS55059.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 65 Score = 38.1 bits (87), Expect = 0.87, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RET ++ G T+ EI LG+S TVN ++ +A +L +A A+R G Sbjct: 4 VTPRETEVIRWMAAGKTAAEIGTILGISHITVNTHIANAKARLGVFKDTALVAAALRNGI 63 Query: 234 I 234 I Sbjct: 64 I 64 >gi|89894771|ref|YP_518258.1| hypothetical protein DSY2025 [Desulfitobacterium hafniense Y51] gi|89334219|dbj|BAE83814.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 228 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 34/53 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +LT RE L G S+EIAEKL ++ TV+ ++G+ +KL+A +R++ + Sbjct: 170 SLTLRELEVFNLVVTGLRSKEIAEKLEITKRTVDFHIGNILLKLEAKSRLEIV 222 >gi|33865102|ref|NP_896661.1| two-component response regulator [Synechococcus sp. WH 8102] gi|33638786|emb|CAE07081.1| possible two-component response regulator [Synechococcus sp. WH 8102] Length = 234 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+ G +++EIA++L LS+ TV + + KLDA +R QA+ A R Sbjct: 163 LTVREEDVLRGICRGLSNQEIADQLNLSIETVKHSVTAVLSKLDARDRSQAMLIAFR 219 >gi|88797566|ref|ZP_01113155.1| ATP-dependent transcriptional regulator [Reinekea sp. MED297] gi|88779738|gb|EAR10924.1| ATP-dependent transcriptional regulator [Reinekea sp. MED297] Length = 873 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 13/83 (15%) Query: 157 ITDFLELFKKRSSAARN-------------LTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + L L+K+R++++R ++++E LQ DG ++++IA+ + ++V Sbjct: 781 VEQLLILYKQRNTSSRRGEEEVPDGLLALGISKKEWRVLQYIIDGKSNDDIAQTMFIAVS 840 Query: 204 TVNAYLGSATVKLDAVNRIQAIA 226 TV ++ + KL NR +AIA Sbjct: 841 TVKTHINNLYKKLSVANRKEAIA 863 >gi|311032377|ref|ZP_07710467.1| two-component response regulator LiaR [Bacillus sp. m3-13] Length = 210 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G T++EIA++L +++ TV ++ + KL +R QA+ A + Sbjct: 148 ELTNREMEILLLMTQGKTNQEIADELFIALKTVKVHVSNILAKLQVQDRTQAVIYAFKHS 207 Query: 233 YI 234 + Sbjct: 208 LV 209 >gi|301631649|ref|XP_002944911.1| PREDICTED: oxygen regulatory protein nreC-like [Xenopus (Silurana) tropicalis] Length = 241 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L DG ++ EIAE+L LS +TV +++ KL +R+ A+ +A G Sbjct: 180 LSVREGQILRLVADGLSNREIAEQLFLSRYTVESHVKRVYRKLAVSSRMNAVREARSRGL 239 Query: 234 I 234 + Sbjct: 240 L 240 >gi|298242112|ref|ZP_06965919.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555166|gb|EFH89030.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 273 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L L G + EIAE+L +S TV Y+ + KL +R QAI +A G Sbjct: 212 LSHRERDILALLAQGCKNAEIAERLVVSPKTVRNYVSNIISKLQVADRAQAILRAKDAG 270 >gi|297543943|ref|YP_003676245.1| LuxR family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841718|gb|ADH60234.1| transcriptional regulator, LuxR family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 257 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+++ ++ GYT I+ +LGL TV + KL N QAIAKAIR Sbjct: 195 KLTDKQIEIIKKCAKGYTELAISMELGLKPATVKYHKKEIIKKLRVKNFQQAIAKAIRLN 254 Query: 233 YI 234 I Sbjct: 255 LI 256 >gi|284031285|ref|YP_003381216.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810578|gb|ADB32417.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 220 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G G ++ EIA +L L TV AY+ + +L NR+QA A G Sbjct: 159 LSPRELEVLSLVGAGLSNAEIAARLFLVEGTVKAYVSAVLTRLGVKNRVQAAIIAYEAGL 218 Query: 234 I 234 + Sbjct: 219 V 219 >gi|239817406|ref|YP_002946316.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803983|gb|ACS21050.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 224 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 36/59 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L G+++++IAE + LSV+T+ + + KL +R QA+ +A + G Sbjct: 163 LSPRELKVLRLIAQGWSNQQIAEAVSLSVNTIEFHAKNIYRKLSVKSRTQAVHQATQQG 221 >gi|35186966|gb|AAQ84141.1| PlmR3 [Streptomyces sp. HK803] Length = 213 Score = 38.1 bits (87), Expect = 0.87, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 36/80 (45%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 QV E+ R A ++ RE L+L +G EIA KL S TV L Sbjct: 134 QVRWTHREVLAPRGLTASGVSPRELDVLRLVSEGKELAEIAAKLCYSERTVKYILHGLMK 193 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 +L NR A++ AIR G I Sbjct: 194 RLQLRNRSHAVSYAIRAGLI 213 >gi|23099565|ref|NP_693031.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22777795|dbj|BAC14066.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 74 Score = 38.1 bits (87), Expect = 0.87, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA++L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREKEVFELLVQDKTTKEIAQELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|329939099|ref|ZP_08288473.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329301984|gb|EGG45877.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 223 Score = 38.1 bits (87), Expect = 0.88, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|328542134|ref|YP_004302243.1| LuxR family transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326411884|gb|ADZ68947.1| LuxR family transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 217 Score = 38.1 bits (87), Expect = 0.88, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE CL +G T EI+ LG+S TV + + K +R + I +A+R G Sbjct: 154 SLSPRERECLIWLANGKTRWEISLILGISEETVKYHFKNIRAKFGTYSRHEIIIQAVRLG 213 Query: 233 YI 234 I Sbjct: 214 LI 215 >gi|322690880|ref|YP_004220450.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320455736|dbj|BAJ66358.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] Length = 248 Score = 38.1 bits (87), Expect = 0.88, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ Sbjct: 188 LTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAV 239 >gi|294628934|ref|ZP_06707494.1| two-component system response regulator [Streptomyces sp. e14] gi|292832267|gb|EFF90616.1| two-component system response regulator [Streptomyces sp. e14] Length = 226 Score = 38.1 bits (87), Expect = 0.88, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query: 167 RSSAARNLTERETSCL-QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RS LT RE L Q+AG G++++EIAE+L +S TV ++ A KL A +R Q + Sbjct: 154 RSGRLEALTVREREVLVQVAG-GHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLV 212 Query: 226 AKAIRFGYI 234 A G + Sbjct: 213 VIAYESGLV 221 >gi|302876066|ref|YP_003844699.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium cellulovorans 743B] gi|307686787|ref|ZP_07629233.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Clostridium cellulovorans 743B] gi|302578923|gb|ADL52935.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium cellulovorans 743B] Length = 805 Score = 38.1 bits (87), Expect = 0.88, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+++E ++L +G T+ EIA +L +S TV ++ + KL+A NRI A+ A Sbjct: 745 LSKKELEVIRLIAEGCTNGEIAARLDISTATVKFHIANLLKKLNAENRIMAVKIA 799 >gi|229169497|ref|ZP_04297202.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228613996|gb|EEK71116.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 184 Score = 38.1 bits (87), Expect = 0.88, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 5/107 (4%) Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQ 183 +GY++ +SE ++ A ++++ + +T L + +++ + N LTERE L Sbjct: 71 DGYLLKDSSSEQVVAAIRMVLQGDSVIHPRMTKKLITYHQQTKSESNENELTEREKEILF 130 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 131 ELVKGLSNKEIAEALYISDKTVKIHVNKIFRKLNVKSRSQAVIYAVR 177 >gi|307326932|ref|ZP_07606123.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887468|gb|EFN18463.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 195 Score = 38.1 bits (87), Expect = 0.89, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 3/94 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +G+ V ++F EV A GA +L ++R R LT RE L Sbjct: 85 IGYLLKDRVSAVTQFASAVEEV---AAGATVMDPEVVRQLLRRRHGPLRQLTPREREVLS 141 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L +G ++ EIA L ++ VN ++ S KLD Sbjct: 142 LMAEGRSNGEIARDLYVTEAAVNKHVSSILQKLD 175 >gi|298241316|ref|ZP_06965123.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554370|gb|EFH88234.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 215 Score = 38.1 bits (87), Expect = 0.89, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L++RE L L G + EIAE+L +S +V Y+ + KL +R QAI +A Sbjct: 154 LSQREREILALLAQGCKNAEIAERLVVSPKSVRNYVSNVISKLQVADRAQAILRA 208 >gi|298251534|ref|ZP_06975337.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546126|gb|EFH79994.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 201 Score = 38.1 bits (87), Expect = 0.89, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L A G + EIA +L LS TV +L +A KL A NR++A A + G+ Sbjct: 141 LTHREREVLVAALPGLSHAEIATRLALSEGTVRNHLSAAMQKLGAHNRMEAARLAEQKGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|291298992|ref|YP_003510270.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568212|gb|ADD41177.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 203 Score = 38.1 bits (87), Expect = 0.89, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT RE L A G ++E I +L +S HT+ +L K+ A NR A+A A R Sbjct: 140 KQLTVREYQILNCAAQGKSNEHIGRELFVSEHTIKTHLRRLFDKIGAANRAHAVAIAFRQ 199 Query: 232 GYI 234 G + Sbjct: 200 GAL 202 >gi|312112369|ref|YP_003990685.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311217470|gb|ADP76074.1| transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 557 Score = 38.1 bits (87), Expect = 0.89, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 9/77 (11%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 HG Q+ D L + LT RE L L G ++ EIA++L +S+HTV ++ Sbjct: 474 HGPKQQLNMDML---------SERLTSREMDVLNLLVQGCSNREIADRLFISIHTVKNHI 524 Query: 210 GSATVKLDAVNRIQAIA 226 + K+ +R Q IA Sbjct: 525 TNIFQKIGVNDRSQLIA 541 >gi|269126099|ref|YP_003299469.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311057|gb|ACY97431.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 222 Score = 38.1 bits (87), Expect = 0.89, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L +G + IA+ + LS T Y KL A NR QA+ A+R G Sbjct: 144 LSPRERQVLALLMEGRSIAAIADSMHLSHSTAKTYAARLYEKLGAANRTQAVMTALRLGL 203 Query: 234 I 234 I Sbjct: 204 I 204 >gi|23465503|ref|NP_696106.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|239621956|ref|ZP_04664987.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23326161|gb|AAN24742.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|239515147|gb|EEQ55014.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 248 Score = 38.1 bits (87), Expect = 0.89, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ Sbjct: 188 LTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAV 239 >gi|328883671|emb|CCA56910.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 219 Score = 38.1 bits (87), Expect = 0.90, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+E+E L L G+G ++ + +L +S TV Y+ KLD NR+QA Sbjct: 159 GLSEKEREVLALLGEGLSNADAGRRLHMSEATVKTYVSRILAKLDCENRVQA 210 >gi|295400540|ref|ZP_06810518.1| transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|294977443|gb|EFG53043.1| transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] Length = 557 Score = 38.1 bits (87), Expect = 0.90, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 9/77 (11%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 HG Q+ D L + LT RE L L G ++ EIA++L +S+HTV ++ Sbjct: 474 HGPKQQLNMDML---------SERLTSREMDVLNLLVQGCSNREIADRLFISIHTVKNHI 524 Query: 210 GSATVKLDAVNRIQAIA 226 + K+ +R Q IA Sbjct: 525 TNIFQKIGVNDRSQLIA 541 >gi|256392927|ref|YP_003114491.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359153|gb|ACU72650.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 236 Score = 38.1 bits (87), Expect = 0.90, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L DG ++ +IA +L LS TV ++ A KL A +R Q + A + G Sbjct: 168 TLTDRERELTALVADGMSNTDIARQLTLSPLTVKTHVNHAMTKLGARDRAQLVVLAYQTG 227 >gi|91223298|ref|ZP_01258564.1| putative transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|91192111|gb|EAS78374.1| putative transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] Length = 222 Score = 38.1 bits (87), Expect = 0.90, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE + G ++++IAE+L +S +TV +L + K+D NR+QA+ A Sbjct: 157 LTKREQQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIDVKNRVQALIWA 211 >gi|328949883|ref|YP_004367218.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328450207|gb|AEB11108.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 208 Score = 38.1 bits (87), Expect = 0.90, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE ++ +G T +EIAE LG+S TV Y A KL R + + A+ G Sbjct: 146 KLTERELEVVRQIAEGKTYKEIAEHLGISEKTVATYRERAAEKLGLKTRAELVRWALERG 205 Query: 233 YI 234 + Sbjct: 206 LL 207 >gi|317016925|gb|ADU85998.1| putative LuxR class regulator [Dactylosporangium aurantiacum subsp. hamdenensis] Length = 923 Score = 38.1 bits (87), Expect = 0.90, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 K+ + L+ E LA G+T+ EIA+KL ++V TV +L A KL+ NR Sbjct: 852 KQPNGGLVKLSRAERRVTALAATGHTNREIAQKLYITVSTVEQHLTKAYRKLNVTNR 908 >gi|307320272|ref|ZP_07599691.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306894151|gb|EFN24918.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 244 Score = 38.1 bits (87), Expect = 0.90, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L++ G ++ IA + LS HTV +L + KL A NR +A+A+ Sbjct: 183 LTARELQILEMVSRGLQNKLIAAEFRLSEHTVKIHLHNIITKLGAHNRTEAVAR 236 >gi|296268760|ref|YP_003651392.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091547|gb|ADG87499.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 234 Score = 38.1 bits (87), Expect = 0.90, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 5/83 (6%) Query: 153 CYQVITDFLELFKKRSS-----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 ++I++F L ++ + A LTERE L+L G + EIA+ L +S +TV Sbjct: 145 AAKLISEFQTLSRREAERPPQVPAPRLTEREMEVLRLVAKGMHNREIAKALFISENTVKN 204 Query: 208 YLGSATVKLDAVNRIQAIAKAIR 230 ++ + KL +R++A+ A+R Sbjct: 205 HVRNILDKLQLHSRMEAVVYAVR 227 >gi|258626995|ref|ZP_05721793.1| Probable csgAB operon transcriptional regulatory protein [Vibrio mimicus VM603] gi|258580669|gb|EEW05620.1| Probable csgAB operon transcriptional regulatory protein [Vibrio mimicus VM603] Length = 214 Score = 38.1 bits (87), Expect = 0.90, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ A +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 148 QTQATVDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 >gi|213850451|ref|ZP_03381349.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 181 Score = 38.1 bits (87), Expect = 0.90, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D+L + S + L+ R+ LQ+ G ++++I L +S TV A+L S +LD Sbjct: 108 DWLNSTELESHDIKALSARQREILQMLAAGESNKQIGRALNISTGTVKAHLESLYRRLDV 167 Query: 219 VNRIQA 224 NR QA Sbjct: 168 KNRTQA 173 >gi|148557095|ref|YP_001264677.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148502285|gb|ABQ70539.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 855 Score = 38.1 bits (87), Expect = 0.90, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SS LT+RE L DG +++ IA +L L+ +TV +L + KL +R +A A Sbjct: 791 SSHPSQLTDREAEILAHLADGVSNKLIARRLALTENTVKFHLKNIFAKLGVASRKEAAAC 850 Query: 228 AIR 230 A R Sbjct: 851 AFR 853 >gi|113867436|ref|YP_725925.1| transcriptional regulator [Ralstonia eutropha H16] gi|113526212|emb|CAJ92557.1| transcriptional regulator, LuxR-family containing alpha/beta hydrolase domain [Ralstonia eutropha H16] Length = 378 Score = 38.1 bits (87), Expect = 0.90, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 33/67 (49%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A LT RE ++L G + +IA L L TV ++ S KL+ NR QAI Sbjct: 307 RDPAFSALTRRERDIVELIAQGRDNAQIAAHLDLCEKTVRNHITSIFAKLEVENRAQAIV 366 Query: 227 KAIRFGY 233 A + G+ Sbjct: 367 LARKAGF 373 >gi|89100033|ref|ZP_01172903.1| response regulator [Bacillus sp. NRRL B-14911] gi|89085267|gb|EAR64398.1| response regulator [Bacillus sp. NRRL B-14911] Length = 210 Score = 38.1 bits (87), Expect = 0.90, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 5/107 (4%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--RNLTERETSCLQ 183 + Y++ TS+ +A+ V HG +V + +++ + LT RE L Sbjct: 99 SSYMLKTSKASEIADAVRATFHGQSVLEPEVTGKMMVKMRQKQTVLPHEELTSREMEILL 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L +G T++EIA++L +++ TV ++ + KL +R QA+ A + Sbjct: 159 LMTEGKTNQEIADELFIALKTVKTHVSNILSKLQVQDRTQAVIYAFK 205 >gi|329851959|ref|ZP_08266640.1| response regulator [Asticcacaulis biprosthecum C19] gi|328839808|gb|EGF89381.1| response regulator [Asticcacaulis biprosthecum C19] Length = 219 Score = 38.1 bits (87), Expect = 0.91, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Query: 160 FLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L+ F+ ++ A LT RET L L G T E+A LGL+ TV Y+ KL Sbjct: 142 LLDHFRTQAPKADPDVALTGRETETLALLARGLTIAEVARHLGLAHSTVAGYVKLIYQKL 201 Query: 217 DAVNRIQAIAKAIRFG 232 + R++A A++ G Sbjct: 202 NISTRVEATLHAVKRG 217 >gi|313836389|gb|EFS74103.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928854|gb|EFS92685.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314971268|gb|EFT15366.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328906399|gb|EGG26174.1| putative two-component response regulator [Propionibacterium sp. P08] Length = 224 Score = 38.1 bits (87), Expect = 0.91, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A G Sbjct: 159 TLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|294630526|ref|ZP_06709086.1| response regulator, two-component system [Streptomyces sp. e14] gi|292833859|gb|EFF92208.1| response regulator, two-component system [Streptomyces sp. e14] Length = 224 Score = 38.1 bits (87), Expect = 0.91, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LTERET L L G ++ EI+E+L ++ TV ++ VKL +R QA Sbjct: 160 DLTERETEVLVLIAQGLSNGEISERLVVAESTVKTHVSRVLVKLGLRDRTQA 211 >gi|269128421|ref|YP_003301791.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313379|gb|ACY99753.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 210 Score = 38.1 bits (87), Expect = 0.91, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 29/49 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV ++ S KL NR Sbjct: 149 QLTQREREVLRLIARGYAYKEIAKELFISVKTVETHVSSVLRKLQLSNR 197 >gi|239636020|ref|ZP_04677034.1| transcriptional regulatory protein DegU [Staphylococcus warneri L37603] gi|239598291|gb|EEQ80774.1| transcriptional regulatory protein DegU [Staphylococcus warneri L37603] Length = 224 Score = 38.1 bits (87), Expect = 0.91, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 37/67 (55%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + S + L++RE L L GY ++EIAEKL +SV TV A+ KL+ ++ + Sbjct: 146 YTDTSDPFKVLSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMNKLELKSKPE 205 Query: 224 AIAKAIR 230 + A++ Sbjct: 206 LVEYAMK 212 >gi|167854557|ref|ZP_02477338.1| sugar phosphate antiporter [Haemophilus parasuis 29755] gi|167854312|gb|EDS25545.1| sugar phosphate antiporter [Haemophilus parasuis 29755] Length = 135 Score = 38.1 bits (87), Expect = 0.91, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+S+ LT+RE +L G+ +EI EKL LS TV+ + +A KL+ N ++ Sbjct: 68 KQSNPVGQLTKREREICELLILGFEPKEIGEKLNLSFKTVHVHRSNAINKLNVKNNVE 125 >gi|163755535|ref|ZP_02162654.1| hypothetical protein KAOT1_05222 [Kordia algicida OT-1] gi|161324448|gb|EDP95778.1| hypothetical protein KAOT1_05222 [Kordia algicida OT-1] Length = 214 Score = 38.1 bits (87), Expect = 0.91, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 41/91 (45%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 M NEVI V + + S+ L + E ++L T +EIA+++ Sbjct: 118 MALNEVITNGFYHSKHVTNILIGSLNGKGSSGLKLKDNEIEFMKLVCTEMTYKEIADQMC 177 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LS T++ Y + KLD NRI + AI+ Sbjct: 178 LSPKTIDGYRDALFEKLDVKNRIGLVIYAIK 208 >gi|114798675|ref|YP_760164.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114738849|gb|ABI76974.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC 15444] Length = 137 Score = 38.1 bits (87), Expect = 0.91, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ ++ +CL+ G T +EIAE + SV+TV ++ +A L A NR A+ AI Sbjct: 77 LSPQQVTCLRWVKAGKTDQEIAEIILCSVNTVRYHIKTALKDLGASNRTHAVVLAIEHRL 136 Query: 234 I 234 I Sbjct: 137 I 137 >gi|322688905|ref|YP_004208639.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|320460241|dbj|BAJ70861.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 299 Score = 38.1 bits (87), Expect = 0.92, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A G Sbjct: 239 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 298 Query: 234 I 234 + Sbjct: 299 V 299 >gi|300788038|ref|YP_003768329.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797552|gb|ADJ47927.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 216 Score = 38.1 bits (87), Expect = 0.92, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 8/102 (7%) Query: 130 GYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNL-TERETSC 181 G+++ + +L + V A+G +++ F E ++R+ A +L T+RE+ Sbjct: 103 GFLLKDAGPRLLVDAVRAAANGEALVSPSVTVRLLARFTERARRRAQGAPDLLTDRESDV 162 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + G T+ EIA+ L +S+ TV +L + KL+ NR + Sbjct: 163 VLAVAQGRTNAEIADDLRVSLSTVKTHLTNVQRKLELRNRTE 204 >gi|260598411|ref|YP_003210982.1| DNA-binding transcriptional activator SdiA [Cronobacter turicensis z3032] gi|260217588|emb|CBA31841.1| Regulatory protein sdiA [Cronobacter turicensis z3032] Length = 241 Score = 38.1 bits (87), Expect = 0.92, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE LQ +G TS EIA L +S +TVN + + K +A N+ Q A G Sbjct: 181 LSKREKEILQWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAAIGL 240 Query: 234 I 234 I Sbjct: 241 I 241 >gi|297198515|ref|ZP_06915912.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197716175|gb|EDY60209.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 38.1 bits (87), Expect = 0.92, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|78484550|ref|YP_390475.1| LuxR family transcriptional regulator [Thiomicrospira crunogena XCL-2] gi|78362836|gb|ABB40801.1| transcriptional regulator, LuxR family [Thiomicrospira crunogena XCL-2] Length = 205 Score = 38.1 bits (87), Expect = 0.92, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 32/54 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE ++ G ++ EIAE++ +S TV A++ S KLDA +R+ + K Sbjct: 143 LSAREIETMEWILQGKSNHEIAEQMAISERTVKAHVHSLLEKLDAKDRLNLVIK 196 >gi|78063892|ref|YP_373800.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383] gi|77971777|gb|ABB13156.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. 383] Length = 922 Score = 38.1 bits (87), Expect = 0.92, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A NL+ RE L G +++EIA L ++ T+ +L + KL+ +RIQA+ Sbjct: 847 RPGTAGNLSAREVEILDYVARGLSNKEIARALRVAPETIKWHLKNIFEKLNVTSRIQAVR 906 Query: 227 KAI 229 + Sbjct: 907 SGL 909 >gi|78356024|ref|YP_387473.1| two component LuxR family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218429|gb|ABB37778.1| two component transcriptional regulator, LuxR family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 223 Score = 38.1 bits (87), Expect = 0.92, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 9/115 (7%) Query: 129 NGYVIFTS---EFLMLANEV----IIEAHGACYQVITDFLELFKKRS--SAARNLTERET 179 +GYV+ + EF++ V I + G V+ +L + +S S+ LT RE Sbjct: 102 DGYVLKDASNDEFILAVESVLGGKIYLSPGVSDAVVKGYLNDARGQSVSSSWETLTPREQ 161 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QL +GY + EIAE L +SV TV + + KL + + A A+ G I Sbjct: 162 EIFQLVAEGYKNREIAEMLVVSVKTVEKHRSNLMQKLGVHSAAELRALALERGII 216 >gi|13474495|ref|NP_106064.1| hypothetical protein mll5392 [Mesorhizobium loti MAFF303099] gi|14025249|dbj|BAB51850.1| mll5392 [Mesorhizobium loti MAFF303099] Length = 517 Score = 38.1 bits (87), Expect = 0.92, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE+ + L DG ++ IA +L LS HTV ++ + +KLD +R A ++R Sbjct: 454 LTARESEVVSLIADGKSNAAIAAELRLSEHTVKRHVANILLKLDLPSRAAAAVFSVR 510 >gi|332307927|ref|YP_004435778.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175256|gb|AEE24510.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 916 Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 35/60 (58%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L L +G ++ EIA++L ++ +TV ++ + KL NR++ I AI G + Sbjct: 857 TKRELEILTLVVEGASNTEIADRLFVTANTVKFHMKNLYSKLAVNNRVKLITTAIHLGLV 916 >gi|300869019|ref|ZP_07113622.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300332999|emb|CBN58814.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 228 Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust. Identities = 25/79 (31%), Positives = 41/79 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 IT+ F +S LT+RE L L G +++EIA+ L ++ TV ++ + KL Sbjct: 142 ITNNESKFVPKSELENPLTKREQEILALVAAGKSNQEIAQILYIASGTVRVHVHAILQKL 201 Query: 217 DAVNRIQAIAKAIRFGYIC 235 + +R QA AI+ G + Sbjct: 202 EVRDRTQAAVVAIQKGLVA 220 >gi|291616969|ref|YP_003519711.1| SdiA [Pantoea ananatis LMG 20103] gi|291151999|gb|ADD76583.1| SdiA [Pantoea ananatis LMG 20103] gi|327393397|dbj|BAK10819.1| cell division activating regulatory protein SdiA [Pantoea ananatis AJ13355] Length = 240 Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + ++RE L+ +G TS+EI+ L +S HTVN Y + + + N+ Q A G Sbjct: 179 DFSQRELEILRWTAEGKTSQEISLILSISEHTVNFYQKNMKKRFNVSNKTQIACYAAAIG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|289705916|ref|ZP_06502294.1| transcriptional regulator, LuxR family [Micrococcus luteus SK58] gi|289557362|gb|EFD50675.1| transcriptional regulator, LuxR family [Micrococcus luteus SK58] Length = 169 Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ G+GY+ IA++L L+ TV YL SA K R A A R + Sbjct: 109 LTDRELDALRATGEGYSVARIAQQLHLAEGTVRNYLSSAMQKTQTSTRHDAARFARRHEW 168 Query: 234 I 234 + Sbjct: 169 L 169 >gi|297195362|ref|ZP_06912760.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719268|gb|EDY63176.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|329948209|ref|ZP_08295081.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328522942|gb|EGF50047.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 224 Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 9/109 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L H NG+++ + + VI + G A +++T L +++ A ++TE Sbjct: 109 LAQHANGFLLKDASPEEIIRAVIAASAGGTTISPAATSRLVTRHLR--PPQTAQAPDVTE 166 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 E + L L +GY++ EIAE+L ++ TV ++ K D +R++ + Sbjct: 167 AEQAVLTLLCEGYSNAEIAEQLVIAESTVKTHVSHLMKKYDVPSRLKLV 215 >gi|291530798|emb|CBK96383.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium siraeum 70/3] Length = 207 Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 25/149 (16%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFA---GIAFPVRLGFHKNGYVIFTSEFLMLA 142 P++ + E+ +I+ + L V + G +L GI +R + NG +F + L Sbjct: 76 PLLLTTFDEQELIQRA--LKVGVSGYILKNTQTDGIFSALRTVY--NGGTVFQQDILSYI 131 Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + ++ +G +S+ LTERE ++L DG ++ EIAEKL LS Sbjct: 132 RDAAVKCYG---------------KSAVFGLLTERELDIVKLIADGCSNAEIAEKLFLSN 176 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 TV Y+ K +R Q A+R+ Sbjct: 177 GTVRNYISVILEKTGLEHRTQI---AVRY 202 >gi|258623350|ref|ZP_05718354.1| Probable csgAB operon transcriptional regulatory protein [Vibrio mimicus VM573] gi|258584316|gb|EEW09061.1| Probable csgAB operon transcriptional regulatory protein [Vibrio mimicus VM573] Length = 214 Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ A +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 148 QTQATVDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 >gi|302550305|ref|ZP_07302647.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467923|gb|EFL31016.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 223 Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|291300052|ref|YP_003511330.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569272|gb|ADD42237.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 38.1 bits (87), Expect = 0.93, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 36/68 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ +LT+RET L L G ++ EIA +L ++ TV ++G KL +R QA+ Sbjct: 152 SATLASLTDRETEILTLIARGLSNREIAGRLVVAEQTVKTHVGRIFAKLGLRDRAQAVVC 211 Query: 228 AIRFGYIC 235 A G + Sbjct: 212 AYETGLVT 219 >gi|331700269|ref|YP_004336508.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954958|gb|AEA28655.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 201 Score = 38.1 bits (87), Expect = 0.94, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 +V ++ +LA+ V+ HG V D +S LT+RE L+ D T Sbjct: 101 FVTKSAPASVLAD-VVRRVHGGGRYVDPDLA--MTALTSEDCPLTDRELEVLRNVDDSGT 157 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +IA ++ LS TV YL SA KL A +R +A A G++ Sbjct: 158 ANDIARRVHLSPGTVRNYLSSAMQKLGAGSRSEAARLARDHGWL 201 >gi|324999047|ref|ZP_08120159.1| transcriptional regulatory protein DegU [Pseudonocardia sp. P1] Length = 220 Score = 38.1 bits (87), Expect = 0.94, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE+ L L G+++ +A +L + TV +++ S KLD +R A+A A+R G Sbjct: 158 GLTHRESEVLALLVAGHSNRSVAAELVIGEETVKSHVRSVLRKLDVPDRTAAVAAALREG 217 >gi|314924490|gb|EFS88321.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|315094740|gb|EFT66716.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315102902|gb|EFT74878.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327328589|gb|EGE70349.1| two-component system response regulator [Propionibacterium acnes HL103PA1] Length = 242 Score = 38.1 bits (87), Expect = 0.94, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A G Sbjct: 177 TLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAG 236 Query: 233 YI 234 + Sbjct: 237 LV 238 >gi|290961675|ref|YP_003492857.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260651201|emb|CBG74322.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 38.1 bits (87), Expect = 0.94, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|269836898|ref|YP_003319126.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786161|gb|ACZ38304.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 242 Score = 38.1 bits (87), Expect = 0.94, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L G +++EIA L ++ TV ++ + KL +R+QA+ A+R G+ Sbjct: 172 LSPREMEVLDCVAQGLSNKEIANTLYITEQTVKNHITAVYKKLHVQDRVQALTCAVRRGW 231 Query: 234 I 234 + Sbjct: 232 V 232 >gi|256374666|ref|YP_003098326.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918969|gb|ACU34480.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 209 Score = 38.1 bits (87), Expect = 0.94, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L G G ++ EI +L + TV +L KLD +R A+ A+R G Sbjct: 147 LSPREVEVLRLVGRGLSNAEIGRQLFIGEATVKTHLLRVFSKLDVSDRTAAVTTAMRLGL 206 Query: 234 I 234 + Sbjct: 207 L 207 >gi|118472043|ref|YP_890213.1| two-component regulator [Mycobacterium smegmatis str. MC2 155] gi|118173330|gb|ABK74226.1| two-component regulator [Mycobacterium smegmatis str. MC2 155] Length = 305 Score = 38.1 bits (87), Expect = 0.94, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+L G ++ +IAE+L ++VHTV ++ S KL R QA A A Sbjct: 239 LTSREIQILRLLEMGLSNRDIAEQLCIAVHTVKNHVHSLLAKLGVSTRAQAAALA 293 >gi|187476714|ref|YP_784737.1| two-component system response regulator [Bordetella avium 197N] gi|115421300|emb|CAJ47805.1| putative two-component system response regulator [Bordetella avium 197N] Length = 207 Score = 38.1 bits (87), Expect = 0.94, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 30/56 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE LQ G G T+ +IA+ L LSV TV Y + KL+ R I AI Sbjct: 147 LTQRERDILQGIGMGMTNRQIAQTLDLSVRTVETYRHTLKRKLNIGGRADLIKYAI 202 >gi|329935679|ref|ZP_08285485.1| putative two-component system response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|329304857|gb|EGG48729.1| putative two-component system response regulator, LuxR family [Streptomyces griseoaurantiacus M045] Length = 227 Score = 38.1 bits (87), Expect = 0.95, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE S L L G + EIA LG++V TV +++ + KL +R+QA A G Sbjct: 157 RLTARERSVLGLLASGLDNTEIAADLGITVGTVKSHVNAVLRKLALRDRVQATILAYDLG 216 >gi|32141322|ref|NP_733723.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|24413921|emb|CAD55524.1| putative regulatory protein [Streptomyces coelicolor A3(2)] Length = 924 Score = 38.1 bits (87), Expect = 0.95, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ + A LT +E+ +LA DG T+ EI +L LS HTV +L KL +R Sbjct: 861 RRDAGAVAALTSQESQIARLARDGLTNSEIGAQLFLSPHTVEWHLRKVYAKLGITSR 917 >gi|312868682|ref|ZP_07728875.1| oxygen regulatory protein NreC [Lactobacillus oris PB013-T2-3] gi|311095796|gb|EFQ54047.1| oxygen regulatory protein NreC [Lactobacillus oris PB013-T2-3] Length = 210 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L GY++ EI+EKL +S TV A+ + + KL +R++ + AI Sbjct: 148 LSKREKEVFPLVALGYSNREISEKLFISTKTVEAHKANISRKLHLHSRVELVRYAIHHHL 207 Query: 234 I 234 I Sbjct: 208 I 208 >gi|295105926|emb|CBL03469.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 214 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + L+ RE LQL GYT++EI+E++ LSV TV A+ KL R ++ A+ Sbjct: 150 QQLSNRELEILQLLAKGYTNKEISEQVYLSVKTVEAHRSKIYKKLGFKTRADLVSYAL 207 >gi|294633266|ref|ZP_06711825.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14] gi|292831047|gb|EFF89397.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14] Length = 230 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +++ A LTERE L L G+G T+ +I ++L L+ TV ++ KL RIQA Sbjct: 155 EEQPDALPGLTEREREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQA 214 >gi|289767442|ref|ZP_06526820.1| regulatory protein [Streptomyces lividans TK24] gi|289697641|gb|EFD65070.1| regulatory protein [Streptomyces lividans TK24] Length = 913 Score = 38.1 bits (87), Expect = 0.96, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ + A LT +E+ +LA DG T+ EI +L LS HTV +L KL +R Sbjct: 850 RRDAGAVAALTSQESQIARLARDGLTNSEIGAQLFLSPHTVEWHLRKVYAKLGITSR 906 >gi|253578118|ref|ZP_04855390.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850436|gb|EES78394.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 342 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +SS LT E S LA G+T++EIA++L LS +T+ YL LD R Sbjct: 279 QSSVTDKLTPMEYSIAMLASKGWTNQEIAKQLSLSPNTIKHYLSRIFHLLDIEKR 333 >gi|223936278|ref|ZP_03628191.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895140|gb|EEF61588.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 247 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +VI F K R + R L+ RE L L GY+++ IA KL LS+ TV ++L Sbjct: 162 RVIESFRRNAKNRDESVR-LSVREEQILLLLSQGYSNKLIASKLELSIDTVCSHLKHVFY 220 Query: 215 KLDAVNRIQAIAK 227 KL +R +A+ + Sbjct: 221 KLHVSSRTEAVVR 233 >gi|156933489|ref|YP_001437405.1| DNA-binding transcriptional activator SdiA [Cronobacter sakazakii ATCC BAA-894] gi|156531743|gb|ABU76569.1| hypothetical protein ESA_01307 [Cronobacter sakazakii ATCC BAA-894] Length = 241 Score = 38.1 bits (87), Expect = 0.96, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE LQ +G TS EIA L +S +TVN + + K +A N+ Q A G Sbjct: 181 LSKREKEILQWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAAIGL 240 Query: 234 I 234 I Sbjct: 241 I 241 >gi|298246526|ref|ZP_06970332.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554007|gb|EFH87872.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 228 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%) Query: 164 FKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 ++RSSA +LTERE L G ++EIA L +S TV +L + KL + Sbjct: 150 VEERSSAQAQRVDLTERELEVLTCVARGQRNKEIATYLSISEPTVKTHLANIYFKLQVDS 209 Query: 221 RIQAIAKAIRFGYI 234 R A+A A++ G + Sbjct: 210 RASAVAVAMKRGLL 223 >gi|260774411|ref|ZP_05883325.1| transcriptional regulatory protein UhpA [Vibrio metschnikovii CIP 69.14] gi|260610538|gb|EEX35743.1| transcriptional regulatory protein UhpA [Vibrio metschnikovii CIP 69.14] Length = 117 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 149 AHGACYQV--ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 A G CY I L K S +LT RE QL DG + IA++LGLS TV+ Sbjct: 31 ASGGCYLTADIASRLVTPKHPISPLASLTPREREVCQLLADGIDVKTIAQQLGLSPKTVH 90 Query: 207 AYLGSATVKLDAVNRI 222 + + KL N + Sbjct: 91 VHRANGMEKLGVSNTV 106 >gi|256783561|ref|ZP_05521992.1| regulatory protein [Streptomyces lividans TK24] Length = 896 Score = 38.1 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ + A LT +E+ +LA DG T+ EI +L LS HTV +L KL +R Sbjct: 833 RRDAGAVAALTSQESQIARLARDGLTNSEIGAQLFLSPHTVEWHLRKVYAKLGITSR 889 >gi|284990498|ref|YP_003409052.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063743|gb|ADB74681.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 226 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L++RE G G ++ EIA L +S+ TV A++ VKLD NR+Q Sbjct: 163 QLSDRERDVAVAVGQGKSNAEIAGDLFMSLPTVKAHVSHIFVKLDVTNRVQ 213 >gi|223935686|ref|ZP_03627602.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895694|gb|EEF62139.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 207 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +L++RE L GY +EIA++L +S+ TV +L S KL +R A+ K ++ Sbjct: 149 SLSKREEEVLHHLAQGYLYKEIADRLSISIDTVRKHLNSIYNKLHVHSRTDAVVKYLQ 206 >gi|158333709|ref|YP_001514881.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158303950|gb|ABW25567.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 209 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 30/51 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RET L L +G ++ EIAE L +S TV ++ S +L+ +R QA Sbjct: 149 LTPRETEVLALIAEGQSNREIAEALYISERTVKNHVNSILKRLNVRDRTQA 199 >gi|88807300|ref|ZP_01122812.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] gi|88788514|gb|EAR19669.1| possible DNA-binding response regulator [Synechococcus sp. WH 7805] Length = 228 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G + EIAE L ++ T Y L+ NR+QA+ K +R G Sbjct: 165 RLTPREYEVLDRLARGMSDREIAEDLIVTEETARTYTKRLLRTLEVNNRVQAVLKGMRCG 224 Query: 233 YI 234 + Sbjct: 225 MV 226 >gi|326801202|ref|YP_004319021.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326551966|gb|ADZ80351.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 216 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 9/71 (12%) Query: 168 SSAARNLTE-----RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 SSA+ N T+ RE L L DG+T++EIAE+L S TV Y S K N Sbjct: 144 SSASANATDLQINNREMEVLALTADGFTNQEIAERLFTSKRTVEGYRQSLIEKTGVRN-- 201 Query: 223 QAIAKAIRFGY 233 A I++ Y Sbjct: 202 --TAALIKYAY 210 >gi|323356751|ref|YP_004223147.1| DNA-binding HTH domain-containing proteins [Microbacterium testaceum StLB037] gi|323273122|dbj|BAJ73267.1| DNA-binding HTH domain-containing proteins [Microbacterium testaceum StLB037] Length = 861 Score = 38.1 bits (87), Expect = 0.97, Method: Composition-based stats. Identities = 21/52 (40%), Positives = 29/52 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 A LT RE L G+T+ EIAE+L LSV TV +++ A K+ +R Sbjct: 793 ALNELTRREKEIALLVEQGHTNREIAERLYLSVRTVESHVYQARAKIGVSSR 844 >gi|313901723|ref|ZP_07835152.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313468011|gb|EFR63496.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 222 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 AR L++RE L G T+ ++A +L +S TV +L KL +R QA+ A+R Sbjct: 152 ARLLSQRELEVLSRIARGKTTAQVARELFISPKTVRNHLSHIMQKLGVRDRTQAVLFALR 211 Query: 231 FGYI 234 G I Sbjct: 212 VGLI 215 >gi|294811706|ref|ZP_06770349.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324305|gb|EFG05948.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 253 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 186 SLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 245 Query: 233 YI 234 + Sbjct: 246 LV 247 >gi|262401518|ref|ZP_06078085.1| transcriptional regulator LuxR family [Vibrio sp. RC586] gi|262352233|gb|EEZ01362.1| transcriptional regulator LuxR family [Vibrio sp. RC586] Length = 214 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ A +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 148 QTQATVDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 >gi|290958670|ref|YP_003489852.1| regulatory protein [Streptomyces scabiei 87.22] gi|260648196|emb|CBG71304.1| putative regulatory protein [Streptomyces scabiei 87.22] Length = 348 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 31/56 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S+ +T RE S L +G+ +AE+LG+SV T A++ + +L A +R Q Sbjct: 261 SAGVAGITHRERSIAALLAEGHQDAVVAERLGISVRTCRAHIARLSERLGAASRTQ 316 >gi|296131053|ref|YP_003638303.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022868|gb|ADG76104.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 218 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA--IAKAIR 230 NLT RE L GDG ++ EIA +L +S TV +++ KL R+QA +A+ +R Sbjct: 159 NLTARERDVLTALGDGLSNAEIAARLVVSETTVKSHVSHVLAKLGVRTRLQAGVLAREVR 218 >gi|213027871|ref|ZP_03342318.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 137 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D+L + S + L+ R+ LQ+ G ++++I L +S TV A+L S +LD Sbjct: 64 DWLNSTELESHDIKALSARQREILQMLAAGESNKQIGRALNISTGTVKAHLESLYRRLDV 123 Query: 219 VNRIQA 224 NR QA Sbjct: 124 KNRTQA 129 >gi|169349619|ref|ZP_02866557.1| hypothetical protein CLOSPI_00357 [Clostridium spiroforme DSM 1552] gi|169293694|gb|EDS75827.1| hypothetical protein CLOSPI_00357 [Clostridium spiroforme DSM 1552] Length = 227 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +++ E +Q G G++++EIA+KL LS TV YL S KL+ +R Q A++ G Sbjct: 160 ISKPEWKVIQQVGYGFSNKEIAQKLYLSEGTVRNYLSSILSKLNLRDRTQLAIWAVQTG 218 >gi|83643206|ref|YP_431641.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631249|gb|ABC27216.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 207 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT R+ L L +G ++++I KL ++ T+ A++ + +L+A NR QA+ +A Sbjct: 147 LTPRQHEVLGLLAEGMSNKQIGTKLSIAPGTIKAHIAAIFRELNAANRTQAVHRA 201 >gi|21224518|ref|NP_630297.1| response regulator [Streptomyces coelicolor A3(2)] gi|4455739|emb|CAB36602.1| putative response regulator [Streptomyces coelicolor A3(2)] Length = 279 Score = 38.1 bits (87), Expect = 0.97, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L G T+ AE+LG+ TV +YL SA KL A R +A+A A R G Sbjct: 217 RLAPREVDVLACVAAGATNGAAAERLGVGPETVKSYLRSAMRKLGARTRTEAVAAARRTG 276 Query: 233 YI 234 ++ Sbjct: 277 WL 278 >gi|319780553|ref|YP_004140029.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166441|gb|ADV09979.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 219 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R LT+R+T L+L +G +++E+A +L L TV ++ KL+ NR +A Sbjct: 153 RQLTDRQTEILRLVAEGLSNKEVALRLELQEKTVKHHMTGVLSKLNVRNRTEA 205 >gi|299069943|emb|CBJ41227.1| putative transcription regulator protein, LuxR family [Ralstonia solanacearum CMR15] Length = 252 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 37/74 (50%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 HGA + + + +K S A L+ERE L G G ++ EIA+ + S +TV YL Sbjct: 159 HGALLRAVANVESDQQKASEALATLSEREREVALLIGQGKSNAEIAQLVCKSENTVKHYL 218 Query: 210 GSATVKLDAVNRIQ 223 S K NR++ Sbjct: 219 SSIMDKTGCENRVR 232 >gi|326777643|ref|ZP_08236908.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326657976|gb|EGE42822.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 214 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL----- 216 +L ++R LT RE L L +G ++ +AE L + TV+ + GS VKL Sbjct: 139 QLIRRRRDPLARLTAREVEVLALMAEGRSNASVAEALHVGEGTVSKHFGSILVKLGLDVS 198 Query: 217 DAVNR 221 DA NR Sbjct: 199 DATNR 203 >gi|284045352|ref|YP_003395692.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949573|gb|ADB52317.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 592 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Query: 168 SSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ ARN LT RE L L G ++ EIA +LG + T+ A++ KLD +R A Sbjct: 88 AAPARNEFGLTRRELHVLTLLAGGSSNGEIAAQLGTAPRTIGAHVARLLEKLDQSSRSGA 147 Query: 225 IAKAIRFGYIC 235 A A+ G + Sbjct: 148 AAVAVERGLLW 158 >gi|262172512|ref|ZP_06040190.1| DNA-binding HTH domain-containing protein [Vibrio mimicus MB-451] gi|261893588|gb|EEY39574.1| DNA-binding HTH domain-containing protein [Vibrio mimicus MB-451] Length = 214 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ A +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 148 QTQATVDLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 >gi|269128746|ref|YP_003302116.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313704|gb|ACZ00079.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 220 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G G ++ EIA +L L TV Y+ + +L+ NR+QA A G Sbjct: 158 LTGRERDVLGLLGQGLSNAEIAARLHLVEGTVKGYVSTILQRLNVENRVQAAILAYEAGL 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|182437028|ref|YP_001824747.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465544|dbj|BAG20064.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 214 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 5/65 (7%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL----- 216 +L ++R LT RE L L +G ++ +AE L + TV+ + GS VKL Sbjct: 139 QLIRRRRDPLARLTAREVEVLALMAEGRSNASVAEALHVGEGTVSKHFGSILVKLGLDVS 198 Query: 217 DAVNR 221 DA NR Sbjct: 199 DATNR 203 >gi|169630986|ref|YP_001704635.1| LuxR transcriptional regulator [Mycobacterium abscessus ATCC 19977] gi|169242953|emb|CAM63981.1| Putative regulatory protein, LuxR [Mycobacterium abscessus] Length = 901 Score = 38.1 bits (87), Expect = 0.98, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ RE L G+G + ++IA +L LSV TV ++ A +KLDA +R Sbjct: 837 ISSREREIAVLIGEGLSDKDIATRLQLSVRTVEGHIYRARMKLDADDR 884 >gi|82703787|ref|YP_413353.1| two component LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82411852|gb|ABB75961.1| two component transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 203 Score = 38.1 bits (87), Expect = 0.98, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 NLT+RE L G+G ++++I +L ++ TV A+L KLD +R++ Sbjct: 134 NLTQREYEIATLVGNGESNKQIVRRLDITERTVKAHLTEVFRKLDIADRLK 184 >gi|325000399|ref|ZP_08121511.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 219 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++ EIA +L L V TV ++ K + +R QA+ A G Sbjct: 150 GLTAREGEVLALMARGLSNAEIARELYLGVETVKTHVAGVLAKTGSRDRTQAVVAAYESG 209 Query: 233 YI 234 ++ Sbjct: 210 FV 211 >gi|301057051|gb|ADK54873.1| LuxR transcriptional regulator [uncultured soil bacterium] Length = 157 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ Y ++EIA++LG++V TVN +L + KL R + + R Sbjct: 96 RLTAREQDVLRCLAKAYDNDEIADELGIAVRTVNRHLEAIRGKL-GTRRRSHLVRLARTA 154 Query: 233 YIC 235 + C Sbjct: 155 HAC 157 >gi|296140194|ref|YP_003647437.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296028328|gb|ADG79098.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 208 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 6/106 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK------KRSSAARNLTER 177 L G+V+ T+E +LA+ V A G L + +R L R Sbjct: 95 LAAGAAGFVVKTAEPPLLASAVRTAASGGSLLSPDALARLVRLAGELPRRDPRLDALGVR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 E L+ G ++ EIA +L L+ TV Y+ + +LD NR Q Sbjct: 155 ERDVLRELACGSSNAEIAARLFLAESTVKGYVSALMTRLDCANRTQ 200 >gi|148553849|ref|YP_001261431.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148499039|gb|ABQ67293.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 878 Score = 38.1 bits (87), Expect = 0.99, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +D L+L ++ L+ RE L L +G+ ++ IA +LGLS HTV ++ + KL Sbjct: 797 SDALQL----AATEHGLSAREGEILSLVIEGHKNKWIARRLGLSEHTVKWHVRNVLEKLG 852 Query: 218 AVNRIQAIA 226 A NR A A Sbjct: 853 APNRASAGA 861 >gi|227818611|ref|YP_002822582.1| LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|36958866|gb|AAQ87291.1| Transcriptional regulatory protein [Sinorhizobium fredii NGR234] gi|227337610|gb|ACP21829.1| putative transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] Length = 267 Score = 38.1 bits (87), Expect = 0.99, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 NLTERE + ++L G++SE I KLG+S TV + + KL ++ Q ++ I+ Sbjct: 206 NLTEREAAIIELVLQGHSSESIGLKLGISTGTVKVHRRNVYRKLGISSQTQLLSLYIK 263 >gi|325922619|ref|ZP_08184370.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325546914|gb|EGD18017.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 222 Score = 38.1 bits (87), Expect = 1.00, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R+LT ++ LQ+ G G +++IA G+S T+ A++ + KL NR QA+ A Sbjct: 148 RDLTPQQFRVLQMLGAGRLNKQIAYDFGVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|21220639|ref|NP_626418.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|256788218|ref|ZP_05526649.1| two component system response regulator [Streptomyces lividans TK24] gi|289772111|ref|ZP_06531489.1| two component system response regulator [Streptomyces lividans TK24] gi|5578847|emb|CAB51249.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] gi|289702310|gb|EFD69739.1| two component system response regulator [Streptomyces lividans TK24] Length = 227 Score = 38.1 bits (87), Expect = 1.00, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 2/69 (2%) Query: 167 RSSAARNLTERETSCL-QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ +LT RE L Q+AG G++++EIAE+L +S TV ++ A KL A +R Q + Sbjct: 155 RAERLESLTVREREVLVQVAG-GHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLV 213 Query: 226 AKAIRFGYI 234 A G + Sbjct: 214 VIAYESGLV 222 >gi|328883517|emb|CCA56756.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 219 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%) Query: 151 GACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 G +VI F + R +AA LT RE ++L +G +++EIA L +S T ++ Sbjct: 129 GVTRRVIERFA--HRPRPAAALHALTARENEVVRLVAEGRSNDEIAAALVISPLTAKTHI 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYIC 235 A KL +R+Q + A G + Sbjct: 187 SRAITKLGLRDRVQLVITAYEHGLVS 212 >gi|322506326|gb|ADX01780.1| ER transcriptional regulator [Acinetobacter baumannii 1656-2] Length = 58 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 31/49 (63%) Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EIA+ LG++ TVN +L ++ KL+ N+I A +A+ G + Sbjct: 10 AEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 58 >gi|318061580|ref|ZP_07980301.1| two component system response regulator [Streptomyces sp. SA3_actG] gi|318080493|ref|ZP_07987825.1| two component system response regulator [Streptomyces sp. SA3_actF] Length = 167 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE ++L G ++ EIA +L LS TV ++G KL +R+Q + A G Sbjct: 98 RLTGREQEVMRLVAQGLSNGEIAARLVLSEATVKTHVGRVLTKLGLRDRVQVVVLAYETG 157 Query: 233 YI 234 + Sbjct: 158 IV 159 >gi|295131556|ref|YP_003582219.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|291375244|gb|ADD99098.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|313771696|gb|EFS37662.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313810519|gb|EFS48233.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313831559|gb|EFS69273.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313832545|gb|EFS70259.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|314974910|gb|EFT19005.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977995|gb|EFT22089.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314984592|gb|EFT28684.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|315095475|gb|EFT67451.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|327332792|gb|EGE74524.1| two-component system response regulator [Propionibacterium acnes HL096PA2] gi|327448413|gb|EGE95067.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448489|gb|EGE95143.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|328762067|gb|EGF75572.1| two-component system response regulator [Propionibacterium acnes HL099PA1] Length = 224 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A G Sbjct: 159 TLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|38230165|gb|AAR14179.1| AHL receptor-like protein [uncultured bacterium] Length = 73 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 21/45 (46%), Positives = 27/45 (60%) Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 CL A +G TS EIA LG++ TVN +L T ++NR QAI Sbjct: 29 CLFWASEGKTSGEIACILGITERTVNYHLNQVTRXTGSMNRYQAI 73 >gi|319791685|ref|YP_004153325.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315594148|gb|ADU35214.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 250 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G++ EIA GLSVHTV ++ + KL ++ +A+ +A R G Sbjct: 186 LSAREHEVLTLIARGFSYAEIARLKGLSVHTVQTHIKNLYGKLAVHSKSEAVFEATRLGL 245 Query: 234 I 234 + Sbjct: 246 L 246 >gi|239929404|ref|ZP_04686357.1| two-component system DNA-binding response regulator [Streptomyces ghanaensis ATCC 14672] gi|291437730|ref|ZP_06577120.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340625|gb|EFE67581.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 241 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 180 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 228 >gi|229172958|ref|ZP_04300510.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228610478|gb|EEK67748.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 215 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 38/68 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K++ + LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA Sbjct: 142 KEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQA 201 Query: 225 IAKAIRFG 232 A++ G Sbjct: 202 ALYAVKHG 209 >gi|159897633|ref|YP_001543880.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890672|gb|ABX03752.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 218 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 33/69 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL R S LTERE L G ++ EIAE L + TV ++ + KL +R Sbjct: 139 ELTSSRRSPLDTLTEREREVLTCIARGMSNAEIAEHLVIGERTVKTHVSNILSKLHLQDR 198 Query: 222 IQAIAKAIR 230 QA A+R Sbjct: 199 TQAAIMALR 207 >gi|148658346|ref|YP_001278551.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570456|gb|ABQ92601.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 216 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE L L G ++ EIA +L ++ TV ++ + KL A NR QA A R G Sbjct: 154 DLSEREREVLVLLAQGLSNREIAGRLSITEGTVKNHVSNILAKLQAENRTQAANIARREG 213 >gi|27762474|gb|AAO23018.1| putative regulatory protein MdlX [Pseudomonas putida] Length = 233 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 32/60 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F + ++ L+ RE +L G + +E+A +L ++ TV +L +A KL+ NR Q Sbjct: 169 FSPAPTLSQRLSLREAEVAELVAQGASDKEVARRLDIAFSTVRTHLKNAMAKLECQNRTQ 228 >gi|332978068|gb|EGK14806.1| nitrate/nitrite response regulator protein NarL [Desmospora sp. 8437] Length = 216 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 36/64 (56%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S +LT RE L L G +++EIAE+L +S TV ++ + KL +R QAI Sbjct: 146 RGSNEDSLTPRELDVLNLMVKGLSNKEIAEQLFISDKTVKIHVSNILKKLRVKSRSQAII 205 Query: 227 KAIR 230 AI+ Sbjct: 206 YAIQ 209 >gi|333025294|ref|ZP_08453358.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332745146|gb|EGJ75587.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 205 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE ++L G ++ EIA +L LS TV ++G KL +R+Q + A G Sbjct: 136 RLTGREQEVMRLVAQGLSNGEIAARLVLSEATVKTHVGRVLTKLGLRDRVQVVVLAYETG 195 Query: 233 YI 234 + Sbjct: 196 IV 197 >gi|330466590|ref|YP_004404333.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809561|gb|AEB43733.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 212 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 32/60 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++LTE+E L+ +G T+ EIA K+ L+ TV Y+ S KL R QA A R Sbjct: 148 QSLTEQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSVLAKLGLERRTQAAVLATRL 207 >gi|315604390|ref|ZP_07879456.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] gi|315314096|gb|EFU62147.1| DNA-binding response regulator [Actinomyces sp. oral taxon 180 str. F0310] Length = 218 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 3/78 (3%) Query: 152 ACYQVITDFLELFKKR---SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +V+ D L ++R +LT E L L GDG ++ EI EKLG++ TV + Sbjct: 129 ADGRVLLDERTLTRRRVDHEDPTADLTPSERKVLDLIGDGLSNREIGEKLGVAEKTVKNH 188 Query: 209 LGSATVKLDAVNRIQAIA 226 + S K+ R Q A Sbjct: 189 ITSLLSKMGLQRRTQVAA 206 >gi|251779454|ref|ZP_04822374.1| transcriptional regulator, LuxR family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083769|gb|EES49659.1| transcriptional regulator, LuxR family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 834 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+ E L L G ++ EI+E L + TV + + KL+ NRIQAI A FG Sbjct: 771 LTKSEIKILYLINKGMSNIEISEYLNIKKDTVKFHTKNIYSKLNVKNRIQAIKVAKEFGI 830 Query: 234 I 234 I Sbjct: 831 I 831 >gi|257067784|ref|YP_003154039.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558602|gb|ACU84449.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 238 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 30/50 (60%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 T RE L L G T+++IA +L + V TV ++L A VKL +R+QA Sbjct: 180 TRREEDVLALVAQGRTNQQIARELFVEVTTVKSHLSHALVKLQLDSRVQA 229 >gi|228996711|ref|ZP_04156348.1| Regulatory protein to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Bacillus mycoides Rock3-17] gi|228763030|gb|EEM11940.1| Regulatory protein to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Bacillus mycoides Rock3-17] Length = 55 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 19/47 (40%), Positives = 30/47 (63%) Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EI +KL +S+ TV ++ + KL NR++AI KA+ G I Sbjct: 8 GATNKEIGKKLFISISTVKTHIINIYTKLQVSNRVEAIKKALEHGLI 54 >gi|225175373|ref|ZP_03729368.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225169125|gb|EEG77924.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 378 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G +++EI+EKL LSV TV + + KL R QAIA A + Sbjct: 316 LSTRELEILDLINRGLSNQEISEKLFLSVGTVKWHTSNIYGKLGVKGRTQAIAMARKLNM 375 Query: 234 I 234 + Sbjct: 376 L 376 >gi|213692561|ref|YP_002323147.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524022|gb|ACJ52769.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458713|dbj|BAJ69334.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 289 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A G Sbjct: 229 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 288 Query: 234 I 234 + Sbjct: 289 V 289 >gi|29828005|ref|NP_822639.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29605107|dbj|BAC69174.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 221 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE + L G G +++EI +L +S T ++ VKL A +R Q + A G Sbjct: 154 GLTEREREVMALVGFGLSNDEIGRRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|83748008|ref|ZP_00945038.1| hypothetical protein RRSL_02536 [Ralstonia solanacearum UW551] gi|207738688|ref|YP_002257081.1| hypothetical protein RSIPO_03379 [Ralstonia solanacearum IPO1609] gi|83725310|gb|EAP72458.1| hypothetical protein RRSL_02536 [Ralstonia solanacearum UW551] gi|206592056|emb|CAQ58962.1| hypothetical protein RSIPO_03379 [Ralstonia solanacearum IPO1609] Length = 252 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 34/73 (46%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 HGA + + ++ S A LTERE L G G ++ EIA+ + S TV YL Sbjct: 159 HGALLRAVASIERDLQQASQALATLTEREREVALLIGQGRSNAEIAQVVCKSESTVKHYL 218 Query: 210 GSATVKLDAVNRI 222 S K NR+ Sbjct: 219 SSIMDKTGCENRV 231 >gi|319441505|ref|ZP_07990661.1| LuxR family two component transcriptional regulator [Corynebacterium variabile DSM 44702] Length = 232 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G G +++EIAEK +S HT ++ K++A +R Q + A G Sbjct: 168 LTGREQEVLLLVGQGLSNQEIAEKFFISPHTAKTHVNRIMSKINAHDRAQLVILAYESGL 227 Query: 234 IC 235 + Sbjct: 228 LV 229 >gi|315226471|ref|ZP_07868259.1| response regulator [Parascardovia denticolens DSM 10105] gi|315120603|gb|EFT83735.1| response regulator [Parascardovia denticolens DSM 10105] Length = 227 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTE E +L +G T++EIAEKL + +V + + KLD NR + +A Sbjct: 164 LTESEKRIAKLLAEGLTNKEIAEKLVMENSSVRSSISRMLKKLDMKNRTEVVA 216 >gi|302535507|ref|ZP_07287849.1| two-component system response regulator [Streptomyces sp. C] gi|302444402|gb|EFL16218.1| two-component system response regulator [Streptomyces sp. C] Length = 219 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NLT++E L L G+G T+ I E+L L+ T+ Y+ S KL R QA A R Sbjct: 156 NLTDQERRILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVARL 214 >gi|315506607|ref|YP_004085494.1| transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315413226|gb|ADU11343.1| transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 951 Score = 38.1 bits (87), Expect = 1.0, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT+ E+ LA G+T+ EIAEKL L+V + + KLD VN +A +RF Sbjct: 865 QGLTDTESRMATLAAQGHTNREIAEKLFLTVSAIEQRMTRIYRKLD-VNSRSELAGRLRF 923 >gi|255523270|ref|ZP_05390241.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium carboxidivorans P7] gi|296186229|ref|ZP_06854634.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] gi|255513138|gb|EET89407.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium carboxidivorans P7] gi|296049497|gb|EFG88926.1| transcriptional regulator, LuxR family [Clostridium carboxidivorans P7] Length = 882 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++RE L L G + EIA+ L ++ T +++ + KL NRIQA+AKA G Sbjct: 822 ISKREKEVLMLIESGAKNSEIAKALFITESTTKSHILNIFSKLGVRNRIQAVAKAKEIGI 881 Query: 234 I 234 I Sbjct: 882 I 882 >gi|256396690|ref|YP_003118254.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362916|gb|ACU76413.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 39/62 (62%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S+A LT+RE L+L G + EIA++L ++ +TV ++ + KL+ +R++A+ A Sbjct: 157 SSAPKLTDREMEVLKLVATGRNNREIAKELFITENTVKNHVRNILEKLNLHSRMEAVVYA 216 Query: 229 IR 230 +R Sbjct: 217 VR 218 >gi|229029980|ref|ZP_04186046.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228731328|gb|EEL82244.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 215 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 38/68 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K++ + LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA Sbjct: 142 KEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQA 201 Query: 225 IAKAIRFG 232 A++ G Sbjct: 202 ALYAVKHG 209 >gi|295839399|ref|ZP_06826332.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|295827445|gb|EDY46841.2| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 226 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 162 RLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQG 221 >gi|167749619|ref|ZP_02421746.1| hypothetical protein EUBSIR_00577 [Eubacterium siraeum DSM 15702] gi|167657372|gb|EDS01502.1| hypothetical protein EUBSIR_00577 [Eubacterium siraeum DSM 15702] Length = 207 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 67/149 (44%), Gaps = 25/149 (16%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFA---GIAFPVRLGFHKNGYVIFTSEFLMLA 142 P++ + E+ +I+ + L V + G +L GI +R + NG +F + L Sbjct: 76 PLLLTTFDEQELIQRA--LKVGVSGYILKNTQTDGIFSALRTVY--NGGTVFQQDILSYI 131 Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + ++ +G +S+ LTERE ++L DG ++ EIAEKL LS Sbjct: 132 RDAAVKCYG---------------KSAVFGLLTERELDIVKLIADGCSNAEIAEKLFLSN 176 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 TV Y+ K +R Q A+R+ Sbjct: 177 GTVRNYISVILEKTGLEHRTQI---AVRY 202 >gi|153215381|ref|ZP_01949979.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|153829298|ref|ZP_01981965.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|229512672|ref|ZP_04402141.1| hypothetical protein VCB_000314 [Vibrio cholerae TMA 21] gi|124114752|gb|EAY33572.1| transcriptional regulator, LuxR family [Vibrio cholerae 1587] gi|148875198|gb|EDL73333.1| transcriptional regulator, LuxR family [Vibrio cholerae 623-39] gi|229350349|gb|EEO15300.1| hypothetical protein VCB_000314 [Vibrio cholerae TMA 21] Length = 214 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ A +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 148 QAQATVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 >gi|50843473|ref|YP_056700.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|289425764|ref|ZP_06427519.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289427938|ref|ZP_06429642.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|50841075|gb|AAT83742.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|289153870|gb|EFD02576.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289158821|gb|EFD07021.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|313763833|gb|EFS35197.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313793774|gb|EFS41805.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313803088|gb|EFS44296.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313808301|gb|EFS46772.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313813848|gb|EFS51562.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313817004|gb|EFS54718.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818081|gb|EFS55795.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313820939|gb|EFS58653.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313823990|gb|EFS61704.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313827075|gb|EFS64789.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313829809|gb|EFS67523.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313839286|gb|EFS77000.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314916571|gb|EFS80402.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918956|gb|EFS82787.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314920977|gb|EFS84808.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926967|gb|EFS90798.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314932382|gb|EFS96213.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314956691|gb|EFT00943.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314959601|gb|EFT03703.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961786|gb|EFT05887.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964770|gb|EFT08870.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314968723|gb|EFT12821.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314979700|gb|EFT23794.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314988252|gb|EFT32343.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314990339|gb|EFT34430.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315079262|gb|EFT51265.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082275|gb|EFT54251.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315083754|gb|EFT55730.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315087395|gb|EFT59371.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315089812|gb|EFT61788.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315100153|gb|EFT72129.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315102475|gb|EFT74451.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315107818|gb|EFT79794.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] gi|327326525|gb|EGE68313.1| two-component system response regulator [Propionibacterium acnes HL096PA3] gi|327335184|gb|EGE76894.1| two-component system response regulator [Propionibacterium acnes HL097PA1] gi|327449654|gb|EGE96308.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327455799|gb|EGF02454.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456107|gb|EGF02762.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|327457944|gb|EGF04599.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328757114|gb|EGF70730.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328757308|gb|EGF70924.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328757492|gb|EGF71108.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|332676424|gb|AEE73240.1| putative two-component response regulator [Propionibacterium acnes 266] Length = 224 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A G Sbjct: 159 TLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|37676042|ref|NP_936438.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] gi|37200582|dbj|BAC96408.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] Length = 224 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 35/60 (58%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + + LT+RE + L G ++++IA KL + +TV +L + K+D NR+QA+ A Sbjct: 154 TVSTKLTKREQQIITLLSLGNSNQQIARKLFVRENTVKTHLHNIFKKIDVKNRVQALIWA 213 >gi|26990830|ref|NP_746255.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|148546967|ref|YP_001267069.1| LuxR family transcriptional regulator [Pseudomonas putida F1] gi|24985838|gb|AAN69719.1|AE016608_5 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] gi|148511025|gb|ABQ77885.1| regulatory protein, LuxR [Pseudomonas putida F1] gi|313498014|gb|ADR59380.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 82 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 33/67 (49%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT RE L G +S EI + L TVN ++ + K + R+ A+ K Sbjct: 13 ADAPVRLTPREQQVLLWCAYGKSSWEIGQILECKESTVNFHVSNILRKFEVPTRVAAVIK 72 Query: 228 AIRFGYI 234 AIR+G + Sbjct: 73 AIRYGML 79 >gi|312884543|ref|ZP_07744247.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122] gi|309367855|gb|EFP95403.1| response regulator [Vibrio caribbenthicus ATCC BAA-2122] Length = 214 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 168 SSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 SSA+ N L+ERE + + G +I+E+L LS TVN+Y KLD ++ Sbjct: 139 SSASENPFAELSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDISGDVE 198 Query: 224 AIAKAIRFGYI 234 AIR G I Sbjct: 199 LTHLAIRHGMI 209 >gi|297538563|ref|YP_003674332.1| two component LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257910|gb|ADI29755.1| two component transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 315 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 8/77 (10%) Query: 160 FLELFKKRSSAAR--------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++ L ++ S AA+ LT RE+ L A G TS +I + LG S TVN +L Sbjct: 231 WVILLREESDAAQIEALMTIFKLTSRESEVLYWATKGKTSRDIGDILGSSPRTVNKHLEH 290 Query: 212 ATVKLDAVNRIQAIAKA 228 VKL R A A A Sbjct: 291 VFVKLGVETRTAAAALA 307 >gi|157962120|ref|YP_001502154.1| two component LuxR family transcriptional regulator [Shewanella pealeana ATCC 700345] gi|157847120|gb|ABV87619.1| two component transcriptional regulator, LuxR family [Shewanella pealeana ATCC 700345] Length = 221 Score = 38.1 bits (87), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT R+ LQL +GY++ EIA ++ +S+ TV + +L+ + + AIR Sbjct: 154 LTSRQRQILQLIAEGYSTREIALRMNVSIKTVETHRAHIMSRLNIFDIAGLVRFAIRSKL 213 Query: 234 IC 235 IC Sbjct: 214 IC 215 >gi|327439935|dbj|BAK16300.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 232 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 30/53 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L++RE ++ GY+S++IA L +S T+ Y+ S K + NR A+A Sbjct: 171 LSKREFEVMKCVAFGYSSKQIAHLLEISETTIKQYIKSVMSKTNTSNRTHAVA 223 >gi|325271203|ref|ZP_08137751.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324103661|gb|EGC00960.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 235 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ RE L+ + G T+ ++A L LS TVN ++ S K +A N+ AIA A G Sbjct: 174 KMSARELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNAANKAGAIAIAALRG 233 Query: 233 YI 234 +I Sbjct: 234 WI 235 >gi|299533172|ref|ZP_07046556.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] gi|298718702|gb|EFI59675.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] Length = 255 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 2/72 (2%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +FK +S +LTERE L+L G S E+A L +S TV+ ++ + K+ R Sbjct: 186 IFKHKS--FESLTEREVEILKLIAQGKNSLEVASYLQISPLTVSTHIKNIYGKMQVRTRA 243 Query: 223 QAIAKAIRFGYI 234 QA+ AI G I Sbjct: 244 QAVRCAILIGII 255 >gi|289704562|ref|ZP_06500996.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289558750|gb|EFD52007.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 202 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ G+GY+ IA++L L+ TV YL SA K R A A R + Sbjct: 142 LTDRELDALRATGEGYSVARIAQQLHLAEGTVRNYLSSAMQKTQTSTRHDAARFARRHEW 201 Query: 234 I 234 + Sbjct: 202 L 202 >gi|260655833|ref|ZP_05861302.1| response regulator GacA [Jonquetella anthropi E3_33 E1] gi|260629449|gb|EEX47643.1| response regulator GacA [Jonquetella anthropi E3_33 E1] Length = 217 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%) Query: 149 AHGACYQVITDFLELFKK-RSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A G ++ D+L L + AR+ L+ERE S L L G TS+ I ++LG+S +TV Sbjct: 126 AGGVVQLLVEDYLRLKRAVHDGPARSMVLSEREKSVLALMAQGLTSKAIGDELGISKNTV 185 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + + KL ++A+ +R Y Sbjct: 186 DTHRRRMMDKLGC----NSVAELLRHAY 209 >gi|227495872|ref|ZP_03926183.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226834549|gb|EEH66932.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 217 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%) Query: 152 ACYQVITDFLELFKKRSS---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +V+ D + ++R+ +LT E L+L GDG ++ EI E+LG++ TV + Sbjct: 127 AAGRVLLDERTVTRRRADHDDPTADLTNAERKVLELIGDGLSNREIGERLGVAEKTVKNH 186 Query: 209 LGSATVKLDAVNRIQAIA 226 + + K+ R Q A Sbjct: 187 ITALLAKMGLQRRTQVAA 204 >gi|188588839|ref|YP_001922350.1| transcriptional regulator, LuxR family protein [Clostridium botulinum E3 str. Alaska E43] gi|188499120|gb|ACD52256.1| transcriptional regulator, LuxR family protein [Clostridium botulinum E3 str. Alaska E43] Length = 834 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+ E L L G ++ EI+E L + TV + + KL+ NRIQAI A FG Sbjct: 771 LTKSEIKILYLINKGMSNIEISEYLNIKKDTVKFHTKNIYSKLNVKNRIQAIKVAKEFGI 830 Query: 234 I 234 I Sbjct: 831 I 831 >gi|58616457|ref|YP_195586.1| hypothetical protein p2A60 [Azoarcus sp. EbN1] gi|56315919|emb|CAI10562.1| hypothetical protein p2A60 [Aromatoleum aromaticum EbN1] Length = 432 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 38/64 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ +E L+ +G++++E+A KL ++ +TV +L KL +R QA+A+A+ Sbjct: 369 AMRLSPKEGQILRRLAEGHSNKELARKLFVTENTVETHLRRIYGKLGIRSRTQAVARALE 428 Query: 231 FGYI 234 G I Sbjct: 429 LGLI 432 >gi|37681138|ref|NP_935747.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] gi|320155205|ref|YP_004187584.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O] gi|326423837|ref|NP_760342.2| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6] gi|37199889|dbj|BAC95718.1| DNA-binding HTH domain-containing protein [Vibrio vulnificus YJ016] gi|319930517|gb|ADV85381.1| transcriptional regulator LuxR family [Vibrio vulnificus MO6-24/O] gi|319999206|gb|AAO09869.2| DNA-binding HTH domain-containing protein [Vibrio vulnificus CMCP6] Length = 215 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 31/56 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE L+ G ++ +IAE L +S TV ++L KL NR+QA A A Sbjct: 154 DLTMREIQVLRCVQSGKSNSQIAEDLFISEFTVKSHLYQTFRKLSVKNRVQAAAWA 209 >gi|94985808|ref|YP_605172.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94556089|gb|ABF46003.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 221 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 14/111 (12%) Query: 130 GYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR-NLTERETSC 181 GY++ + LA+ + A G A +++ DF R+ R LT +E Sbjct: 108 GYMLKDASSDTLADAIHAAARGEVRLHPEAARRLVRDF------RTPEMRETLTPKEVIV 161 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL GY++ +IA G++ TV ++ KL +R QA A+R G Sbjct: 162 LQLIARGYSNRDIARDQGVTEATVKTHVSRLLGKLGLESRTQAALYALRHG 212 >gi|315109607|gb|EFT81583.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] Length = 224 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A G Sbjct: 159 TLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|327440878|dbj|BAK17243.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 209 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L G ++EIAE+L +++ TV ++ + KL+ +R QA+ A + G Sbjct: 147 HLTDREMEVLLCMARGLANQEIAEELFIALKTVKTHVSNILSKLEVQDRTQAVVYAFQNG 206 Query: 233 YI 234 + Sbjct: 207 LV 208 >gi|311112352|ref|YP_003983574.1| two component system response regulator [Rothia dentocariosa ATCC 17931] gi|310943846|gb|ADP40140.1| two component system response regulator [Rothia dentocariosa ATCC 17931] Length = 215 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 8/79 (10%) Query: 162 ELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 EL + R+ R LT RE L L +G ++ +IAEKL ++ TV ++ + KLD Sbjct: 137 ELMEHRAVQQRLERLTSRELEVLTLMAEGLSNSDIAEKLFVAEKTVAKHINTLFAKLDLP 196 Query: 220 N------RIQAIAKAIRFG 232 + R+QA+ +R G Sbjct: 197 DTNSNARRVQAVLHLLRNG 215 >gi|294628215|ref|ZP_06706775.1| regulatory protein, LuxR [Streptomyces sp. e14] gi|292831548|gb|EFF89897.1| regulatory protein, LuxR [Streptomyces sp. e14] Length = 331 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 32/57 (56%) Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L G T E ++LG+S+ TV + + +LDA +R +A KA + G++ Sbjct: 275 ERELLRLLASGMTDEAAGKRLGVSLRTVRRQMAALMQRLDASSRFEAGLKAAQRGWL 331 >gi|256391849|ref|YP_003113413.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256358075|gb|ACU71572.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ EIA+ L +S TV ++ KLD +R+QA+ A G Sbjct: 156 LTPRERDVLELVARGLSNPEIAQTLVVSESTVKTHMKRILDKLDLRDRVQAVILAYEAG 214 >gi|229822019|ref|YP_002883545.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567932|gb|ACQ81783.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 211 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + R A L+ RE L+L G T+ + A+ L +S TV +L A KL +R Sbjct: 134 MGQMRQPAPEPLSRRELEVLELVARGSTNRDAAKHLFISEATVKTHLLHAYAKLGVNDRA 193 Query: 223 QAIAKAIRFGYI 234 A+A A GY+ Sbjct: 194 AAVATAFSRGYL 205 >gi|256381033|ref|YP_003104693.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255925336|gb|ACU40847.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 219 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G T+ +IA +L +S TV ++ S KL NR++ AI G Sbjct: 153 QLTDRETEVLRLVAKGLTARQIATRLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHG 212 >gi|226361985|ref|YP_002779763.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226240470|dbj|BAH50818.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 206 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 10/63 (15%) Query: 156 VITDFLELFKKRSSAARNLTE----------RETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 VI D L + ++R RN TE RE L L DG S+ IA++LG+SV TV Sbjct: 116 VIQDALRVARQRFGERRNRTELQGRIDALTVREREILALVLDGLPSKNIAKELGISVKTV 175 Query: 206 NAY 208 + + Sbjct: 176 DVH 178 >gi|222081078|ref|YP_002540441.1| two-component nodulation response regulator protein [Agrobacterium radiobacter K84] gi|221725757|gb|ACM28846.1| two-component nodulation response regulator protein [Agrobacterium radiobacter K84] Length = 784 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE LQL G +++ IA+ L +S TV +LG+ KL R +A+ A G+ Sbjct: 724 LSQREAQMLQLIAGGLSNKRIAQTLNISEVTVKFHLGNLFRKLGCNRRAEALRAATALGW 783 Query: 234 I 234 + Sbjct: 784 L 784 >gi|212638430|ref|YP_002314950.1| GerE family transcriptional regulator [Anoxybacillus flavithermus WK1] gi|212559910|gb|ACJ32965.1| Transcriptional regulator GerE family [Anoxybacillus flavithermus WK1] Length = 89 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 27 LTKREREVFELLLQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 85 >gi|52222873|gb|AAU34214.1| two component response regulator MppU [Streptomyces hygroscopicus] Length = 222 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE +G T+ +IA +L +S TV ++ S KL NR+ +A GY Sbjct: 156 LTEREVEIAGKVAEGKTNSDIARELFISAGTVKTHVASIQRKLQVRNRVGVAVRAWELGY 215 >gi|328881294|emb|CCA54533.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 225 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|228997307|ref|ZP_04156929.1| Response regulator receiver [Bacillus mycoides Rock3-17] gi|229004932|ref|ZP_04162659.1| Response regulator receiver [Bacillus mycoides Rock1-4] gi|228756280|gb|EEM05598.1| Response regulator receiver [Bacillus mycoides Rock1-4] gi|228762399|gb|EEM11324.1| Response regulator receiver [Bacillus mycoides Rock3-17] Length = 578 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 4/71 (5%) Query: 163 LFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LFK+ S + LT RE L +G +EIA KL LS TV Y S +KL Sbjct: 503 LFKEYSPMPKKPPYELTPREMDVLGCLKEGLRYKEIAAKLFLSEGTVRNYASSIYMKLQV 562 Query: 219 VNRIQAIAKAI 229 R +A+ KA+ Sbjct: 563 SGRGEAVKKAL 573 >gi|229167101|ref|ZP_04294844.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228616335|gb|EEK73417.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 211 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 38/68 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K++ + LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA Sbjct: 142 KEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQA 201 Query: 225 IAKAIRFG 232 A++ G Sbjct: 202 ALYAVKHG 209 >gi|298345706|ref|YP_003718393.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304390592|ref|ZP_07372545.1| DNA-binding response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657799|ref|ZP_07910679.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235767|gb|ADI66899.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|304326348|gb|EFL93593.1| DNA-binding response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491596|gb|EFU81207.1| DNA-binding response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 201 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L++A G +EIA ++ LS TV YL SA K A A KA G+ Sbjct: 141 LTEREIEVLKIAEKGLKVQEIATQVYLSPGTVRNYLSSAISKTHADTSAGAARKARELGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|222106363|ref|YP_002547154.1| two component response regulator [Agrobacterium vitis S4] gi|221737542|gb|ACM38438.1| two component response regulator [Agrobacterium vitis S4] Length = 896 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 34/56 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE LQL G ++ EIA +L ++++TV ++ + KL +R QA+ K + Sbjct: 840 LTQREDDVLQLMRWGLSNSEIATRLDINLNTVKSHAKNIFAKLGVKSRTQAVLKTL 895 >gi|197106944|ref|YP_002132321.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum HLK1] gi|196480364|gb|ACG79892.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum HLK1] Length = 256 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE CL+L +S++IA +LG+S +V+ Y A KL +R +A Sbjct: 15 LTQRERECLRLVDQHLSSKQIARELGMSKTSVDTYCDRARRKLGVPDRYEA 65 >gi|332799645|ref|YP_004461144.1| LuxR family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697380|gb|AEE91837.1| two component transcriptional regulator, LuxR family [Tepidanaerobacter sp. Re1] Length = 215 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +NLT RE L G ++ EI+ LG+S TV ++ S KL+ ++R QA AI+ Sbjct: 153 KNLTAREKEVLADIAKGMSNREISIDLGISEKTVKNHVSSILRKLNLMDRTQAAVFAIK 211 >gi|306825879|ref|ZP_07459218.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432240|gb|EFM35217.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 199 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G +++EIA++L LS TV Y+ + KL+A NR +A A G+ Sbjct: 139 LTEQEIAVLKGIAQGLSNQEIADQLYLSNGTVRNYVTNILSKLNAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|207722498|ref|YP_002252934.1| hypothetical protein RSMK05116 [Ralstonia solanacearum MolK2] gi|206587679|emb|CAQ18261.1| hypothetical protein RSMK05116 [Ralstonia solanacearum MolK2] Length = 252 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 34/73 (46%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 HGA + + ++ S A LTERE L G G ++ EIA+ + S TV YL Sbjct: 159 HGALLRAVASVERDLQQASQALATLTEREREVALLIGQGRSNAEIAQVVCRSESTVKHYL 218 Query: 210 GSATVKLDAVNRI 222 S K NR+ Sbjct: 219 SSIMDKTGCENRV 231 >gi|154486396|ref|ZP_02027803.1| hypothetical protein BIFADO_00208 [Bifidobacterium adolescentis L2-32] gi|154084259|gb|EDN83304.1| hypothetical protein BIFADO_00208 [Bifidobacterium adolescentis L2-32] Length = 221 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 33/67 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ + LT RE + L DG EIAE+L +S +TV ++ KL+ Q Sbjct: 151 IRREEETSPRLTVREEQIISLCADGMLDREIAERLDISENTVRKHMQGILKKLNCKTARQ 210 Query: 224 AIAKAIR 230 A+A +R Sbjct: 211 AVALWVR 217 >gi|21222053|ref|NP_627832.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|256786858|ref|ZP_05525289.1| two-component system regulator [Streptomyces lividans TK24] gi|289770753|ref|ZP_06530131.1| two-component system regulator [Streptomyces lividans TK24] gi|4753862|emb|CAB42025.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] gi|289700952|gb|EFD68381.1| two-component system regulator [Streptomyces lividans TK24] Length = 221 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 13/109 (11%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLEL------FKKRSSAARNLT 175 +G+++ + LA+ V + A G ++IT+F +L +A +LT Sbjct: 100 SGFLLKDASARQLADGVRVVAAGEALLAPSITKRLITEFSKLSETPRLMPSAQAAYGDLT 159 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +RET L L G ++ EIAE+L ++ T+ ++ VKL +R QA Sbjct: 160 DRETEVLVLIAQGLSNGEIAERLVVAESTIKTHVSRILVKLGLRDRTQA 208 >gi|300698252|ref|YP_003748913.1| LuxR family transcriptional regulator [Ralstonia solanacearum CFBP2957] gi|299074976|emb|CBJ54545.1| putative transcription regulator protein, LuxR family [Ralstonia solanacearum CFBP2957] Length = 252 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 34/73 (46%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 HGA + + ++ S A LTERE L G G ++ EIA+ + S TV YL Sbjct: 159 HGALLRAVASVERDLQQASQALATLTEREREVALLIGQGRSNAEIAQVVCKSESTVKHYL 218 Query: 210 GSATVKLDAVNRI 222 S K NR+ Sbjct: 219 SSIMDKTGCENRV 231 >gi|282863714|ref|ZP_06272772.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282561415|gb|EFB66959.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 222 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 11/107 (10%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR--------NLTER 177 +G+++ + LA+ V + A G V + F K ++A R +LTER Sbjct: 103 SGFLLKDASARQLADGVRVVASGEALLAPTVTRRLITEFSKIATAPRPPAMARIGDLTER 162 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ET L L G +++EIA L ++ T+ ++ VKL +R QA Sbjct: 163 ETEVLVLIAQGLSNQEIASHLIVAESTIKTHVSRILVKLGLRDRTQA 209 >gi|291299247|ref|YP_003510525.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568467|gb|ADD41432.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 188 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 34/68 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + +S+ L+ERE + L G T+ EIAEKL +S T +L + KL NR+ Sbjct: 115 EPKSADTSVLSERELEVVALVAQGLTNAEIAEKLFISAGTAKNHLANVQAKLGVGNRVGI 174 Query: 225 IAKAIRFG 232 A A G Sbjct: 175 AAWAWETG 182 >gi|237730533|ref|ZP_04561014.1| LuxR transcriptional regulator [Citrobacter sp. 30_2] gi|226906072|gb|EEH91990.1| LuxR transcriptional regulator [Citrobacter sp. 30_2] Length = 178 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 32/64 (50%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + + LTERE L L GYT++EI+E + L+ T+ A+ KL N + Sbjct: 109 SQKRLTEREQQILNLLVSGYTAKEISELVSLNYKTIQAHKMRVVAKLGLTNTSDLNKLIV 168 Query: 230 RFGY 233 RF + Sbjct: 169 RFTH 172 >gi|153825634|ref|ZP_01978301.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|149740664|gb|EDM54771.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] Length = 214 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ A +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 148 QAQATVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 >gi|111019837|ref|YP_702809.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110819367|gb|ABG94651.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 206 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 10/63 (15%) Query: 156 VITDFLELFKKRSSAARNLTE----------RETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 VI D L + ++R RN TE RE L L DG S+ IA++LG+SV TV Sbjct: 116 VIQDALRVARQRFGERRNRTELQGRIDTLTVREREILALVLDGLPSKNIAKELGISVKTV 175 Query: 206 NAY 208 + + Sbjct: 176 DVH 178 >gi|21902157|gb|AAM78432.1|AF425991_3 putative two-component response regulator [Streptomyces coelicolor A3(2)] Length = 217 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 31/62 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L L G + EIAE LGLS T ++ KL+A +R Q + A G Sbjct: 153 LSERERQVLTLVARGLNNTEIAEALGLSPLTAKTHVSRIMGKLEARDRAQLVIVAYESGL 212 Query: 234 IC 235 + Sbjct: 213 VT 214 >gi|315657661|ref|ZP_07910543.1| LuxR family response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492133|gb|EFU81742.1| LuxR family response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 225 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%) Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +QL G Y+++EIA + GLS++TV+ Y+ A KL + R + + IR G Sbjct: 168 VVQLIGKAYSNKEIAAETGLSINTVSTYVKCALAKL-GMRRGELTMQIIRLG 218 >gi|312880287|ref|ZP_07740087.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] gi|310783578|gb|EFQ23976.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] Length = 226 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 6/110 (5%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR---NLTERETSCL 182 +GYV+ S + L + V G Y +V L F +R +LT RE L Sbjct: 101 DGYVLKASGLVELLSAVRSVTRGENYVDPKVAGKLLTSFHRRREERDLLVDLTPREREVL 160 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G+++ EIA K+ LS TV ++ KL+ +R QA A + G Sbjct: 161 YWLSQGFSNAEIALKMVLSEKTVKNHVSHVLRKLELNDRTQAAVLAWKMG 210 >gi|325067923|ref|ZP_08126596.1| two component response regulator [Actinomyces oris K20] gi|326773871|ref|ZP_08233153.1| two-component system response regulator [Actinomyces viscosus C505] gi|326636010|gb|EGE36914.1| two-component system response regulator [Actinomyces viscosus C505] Length = 224 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 9/109 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L H NG+++ + + VI + G A +++T L +++ A ++TE Sbjct: 109 LAQHANGFLLKDASPEEIIRAVIAASAGGTTISPAATSRLVTRHLR--SPQTAQAPDVTE 166 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 E + L L +GY++ EIAE+L ++ TV ++ K D +R++ + Sbjct: 167 AEQAVLTLLCEGYSNAEIAEQLVVAESTVKTHVSHLMKKYDVPSRLKLV 215 >gi|300855506|ref|YP_003780490.1| putative transcriptional regulator [Clostridium ljungdahlii DSM 13528] gi|300435621|gb|ADK15388.1| predicted transcriptional regulator [Clostridium ljungdahlii DSM 13528] Length = 824 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 36/75 (48%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 ++E + S NL++RE L L G ++A KLG+S T +L + KL Sbjct: 750 YIENLQNSSENKINLSQRELEVLSLTAKGLKRTQVACKLGISESTAKTHLQNIYKKLQVS 809 Query: 220 NRIQAIAKAIRFGYI 234 + +A+ A +G I Sbjct: 810 GKFEAVKIARMYGII 824 >gi|312194794|ref|YP_004014855.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311226130|gb|ADP78985.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 219 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L +RE L G+G ++ +IA +LGLS TV Y+ S KL +R QA Sbjct: 147 LGDREREVFHLLGEGLSNRQIAGRLGLSDKTVKNYVSSMLSKLRLTSRTQA 197 >gi|256788073|ref|ZP_05526504.1| two-component system response regulator [Streptomyces lividans TK24] Length = 222 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ + DG T +IA L LS TV YL +A K NR +A+ A G+ Sbjct: 162 LTARECDVLRASADGATVADIAGALHLSESTVRNYLSAAIGKTGTRNRAEALRAARGQGW 221 Query: 234 I 234 + Sbjct: 222 L 222 >gi|172038808|ref|YP_001805309.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700262|gb|ACB53243.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 218 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 32/58 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L G T+ EIA+ L ++ TV ++ + KLD +R QA A+R Sbjct: 160 LTQREQEILALIAAGKTNSEIAQVLHIATGTVRVHVHAILQKLDVRDRTQAAILALRM 217 >gi|27362891|gb|AAN86997.1| virulence regulator [Pectobacterium carotovorum subsp. carotovorum] Length = 204 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 75/174 (43%), Gaps = 23/174 (13%) Query: 74 DDFLFHFNS-GLLPI--IWQSIQEETVI-------ESSGQLSVRLEGGLLPFAGIAFPVR 123 +DF+ N G+ I +W + E + + + SG+ S+ LE + G++ + Sbjct: 21 NDFMHDVNVIGVNDIDEVWSCLDEMSQVFILLNCNQESGEYSIFLETLHEKYIGVSVIIM 80 Query: 124 ------------LGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSA 170 L H G V+ TS +A + + G C E + +S Sbjct: 81 VDTIERHILNNYLKHHVMGVVLKTSPVDSIAQALKTVSMGMVCLPDDGVIYEGWSVDNSV 140 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+ER+ LQL G ++++I+ L +S TV ++L S +L+ NR QA Sbjct: 141 KGKLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQA 194 >gi|83943587|ref|ZP_00956046.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp. EE-36] gi|83845819|gb|EAP83697.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp. EE-36] Length = 249 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RE CL G EI L +S T ++ A KL A R A+AK++ G Sbjct: 186 NLTPRERDCLSYLAIGLRPAEICWTLKISEKTFEKHIKGAKEKLRASTRDHAVAKSMVLG 245 Query: 233 YI 234 I Sbjct: 246 LI 247 >gi|119714199|ref|YP_919341.1| response regulator receiver [Nocardioides sp. JS614] gi|119526108|gb|ABL79478.1| response regulator receiver [Nocardioides sp. JS614] Length = 215 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + ++ +LT RE L L G+++ EIA +L + TV ++ KL +R Sbjct: 143 ELRPEVAARLADLTSRERDVLVLLAQGHSNAEIAARLVVGEGTVKTHVAHVLAKLGVRDR 202 Query: 222 IQAIAKAIRFGYI 234 +QA+ A G + Sbjct: 203 LQAVVSAFNAGVV 215 >gi|311895697|dbj|BAJ28105.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 222 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RET +L G ++ IA L LS TV ++ + KLD +R QA+ A G Sbjct: 157 DLTPRETEVWRLIATGLDNDAIAAALDLSRSTVKNHITALFAKLDVRDRAQAVIAAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|311064578|ref|YP_003971303.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|310866897|gb|ADP36266.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] Length = 248 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G +++EIA+KL +S+ T ++ K++A +R+QA+ A G Sbjct: 188 LTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHILAKINARDRVQAVVFAYDNGL 247 Query: 234 I 234 + Sbjct: 248 V 248 >gi|297156203|gb|ADI05915.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 1003 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ +IAE+L +S T + ++ + KL A R +A A A R G Sbjct: 941 LTARERDVLRLVAAGRSNRQIAEELFISPKTASVHVSNIMAKLGASGRGEAAAIAHRLG 999 >gi|296453955|ref|YP_003661098.1| LuxR family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296183386|gb|ADH00268.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. longum JDM301] Length = 286 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A G Sbjct: 226 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 285 Query: 234 I 234 + Sbjct: 286 V 286 >gi|271963284|ref|YP_003337480.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506459|gb|ACZ84737.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 217 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 31/63 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++ EIA++L L+ TV +LG KL +R Q + A G Sbjct: 150 GLTAREREVLVLVARGLSNMEIADRLDLAEATVKTHLGRVLAKLGLRDRAQVVVYAYESG 209 Query: 233 YIC 235 + Sbjct: 210 LVT 212 >gi|256787861|ref|ZP_05526292.1| two-component system response regulator [Streptomyces lividans TK24] gi|289771746|ref|ZP_06531124.1| two-component system response regulator [Streptomyces lividans TK24] gi|289701945|gb|EFD69374.1| two-component system response regulator [Streptomyces lividans TK24] Length = 231 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 31/62 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L L G + EIAE LGLS T ++ KL+A +R Q + A G Sbjct: 157 LSERERQVLTLVARGLNNTEIAEALGLSPLTAKTHVSRIMGKLEARDRAQLVIVAYESGL 216 Query: 234 IC 235 + Sbjct: 217 VT 218 >gi|269124126|ref|YP_003306703.1| two component transcriptional regulator, LuxR family [Streptobacillus moniliformis DSM 12112] gi|268315452|gb|ACZ01826.1| two component transcriptional regulator, LuxR family [Streptobacillus moniliformis DSM 12112] Length = 200 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT E L+L G + +EI +K +S TV +L + KL N+ +AI KA G Sbjct: 138 NLTSTEIKILELTRKGESIDEITKKAYISKRTVFNHLNNIYSKLGVTNKQEAIYKAQELG 197 Query: 233 Y 233 Y Sbjct: 198 Y 198 >gi|229133094|ref|ZP_04261931.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228650370|gb|EEL06368.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 211 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 38/68 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K++ + LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA Sbjct: 142 KEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQA 201 Query: 225 IAKAIRFG 232 A++ G Sbjct: 202 ALYAVKHG 209 >gi|145298550|ref|YP_001141391.1| response regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142851322|gb|ABO89643.1| two-component system response regulator [Aeromonas salmonicida subsp. salmonicida A449] Length = 214 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ERE + + G +I+E+L LS TVN+Y KLD ++ AIR+ Sbjct: 147 KSLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRY 206 Query: 232 GYI 234 G + Sbjct: 207 GML 209 >gi|163940056|ref|YP_001644940.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862253|gb|ABY43312.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 213 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 38/68 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K++ + LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA Sbjct: 142 KEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQA 201 Query: 225 IAKAIRFG 232 A++ G Sbjct: 202 ALYAVKHG 209 >gi|121998744|ref|YP_001003531.1| two component LuxR family transcriptional regulator [Halorhodospira halophila SL1] gi|121590149|gb|ABM62729.1| two component transcriptional regulator, LuxR family [Halorhodospira halophila SL1] Length = 217 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ G +++ IA LG+S TV ++ S KL +R++A KA+ FG Sbjct: 151 GLTPRERDILERLAAGESNKVIARHLGISDGTVKLHVKSVLRKLGVHSRVEAAIKAVDFG 210 >gi|282854807|ref|ZP_06264141.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282581953|gb|EFB87336.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314967298|gb|EFT11397.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981731|gb|EFT25824.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315092496|gb|EFT64472.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] Length = 224 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A G Sbjct: 159 TLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYDAG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|297194671|ref|ZP_06912069.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152384|gb|EDY64245.2| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 49 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 29/48 (60%) Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T +IAE+L LS TV YL SA K NR++A+ A + G++ Sbjct: 2 DGATVADIAERLHLSESTVRNYLSSAIGKTGTRNRMEAVRAARQQGWL 49 >gi|21220978|ref|NP_626757.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|6752360|emb|CAB69738.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 227 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 31/62 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L L G + EIAE LGLS T ++ KL+A +R Q + A G Sbjct: 153 LSERERQVLTLVARGLNNTEIAEALGLSPLTAKTHVSRIMGKLEARDRAQLVIVAYESGL 212 Query: 234 IC 235 + Sbjct: 213 VT 214 >gi|84495578|ref|ZP_00994697.1| two-component response regulator [Janibacter sp. HTCC2649] gi|84385071|gb|EAQ00951.1| two-component response regulator [Janibacter sp. HTCC2649] Length = 207 Score = 38.1 bits (87), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 S A L+ RET L+L G ++++A LG++ TV A+LG ++ ++R A Sbjct: 141 SVADRLSPRETQVLRLVAQGLANKQVARALGITERTVKAHLGRVFREIGVLDRTSA 196 >gi|46190453|ref|ZP_00121483.2| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bifidobacterium longum DJO10A] Length = 64 Score = 38.1 bits (87), Expect = 1.1, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A Sbjct: 4 LTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAVVFA 58 >gi|331657961|ref|ZP_08358923.1| regulatory protein SdiA [Escherichia coli TA206] gi|331056209|gb|EGI28218.1| regulatory protein SdiA [Escherichia coli TA206] Length = 87 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 26 NFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 85 Query: 233 YI 234 I Sbjct: 86 LI 87 >gi|313140461|ref|ZP_07802654.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313132971|gb|EFR50588.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 248 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G +++EIA+KL +S+ T ++ K++A +R+QA+ A G Sbjct: 188 LTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHILAKINARDRVQAVVFAYDNGL 247 Query: 234 I 234 + Sbjct: 248 V 248 >gi|269218650|ref|ZP_06162504.1| DNA-binding response regulator, LuxR family [Actinomyces sp. oral taxon 848 str. F0332] gi|269211761|gb|EEZ78101.1| DNA-binding response regulator, LuxR family [Actinomyces sp. oral taxon 848 str. F0332] Length = 215 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Query: 152 ACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +V+ D + ++R+ A +LT E L+L GDG ++ EI ++LG++ TV + Sbjct: 124 ASGRVLLDERTVSRRRADHADPTADLTPSERRVLELIGDGLSNREIGDRLGVAEKTVKNH 183 Query: 209 LGSATVKLDAVNRIQAIA 226 + S K+ R Q A Sbjct: 184 ITSLLSKMGLQRRTQVAA 201 >gi|239933385|ref|ZP_04690338.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291441749|ref|ZP_06581139.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291344644|gb|EFE71600.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 3/74 (4%) Query: 164 FKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + + AAR+L T+RE + L +G ++ +IA ++ LS TV ++ + KL+ + Sbjct: 139 YGPQEDAARSLDPLTDRERAVLGFIAEGLSNTDIAARMHLSTGTVKDHVSAILTKLEVGS 198 Query: 221 RIQAIAKAIRFGYI 234 R+QA A R G + Sbjct: 199 RVQAALLAERAGLL 212 >gi|229011537|ref|ZP_04168723.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228749692|gb|EEL99531.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 211 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 38/68 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K++ + LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA Sbjct: 142 KEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQA 201 Query: 225 IAKAIRFG 232 A++ G Sbjct: 202 ALYAVKHG 209 >gi|150397367|ref|YP_001327834.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150028882|gb|ABR60999.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 247 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 NLTERE + ++L G++SE I KLG+S TV + + KL ++ Q ++ I+ Sbjct: 186 NLTEREAAIIELVLQGHSSESIGLKLGISTGTVKVHRRNVYRKLGISSQTQLLSLYIK 243 >gi|90020641|ref|YP_526468.1| response regulator receiver domain-containing protein [Saccharophagus degradans 2-40] gi|89950241|gb|ABD80256.1| regulatory protein, LuxR [Saccharophagus degradans 2-40] Length = 221 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L+L DG T+ +I+ L +S HTV ++L + K+ NR++A Sbjct: 158 LTRRERQILKLIKDGATNADISTALKVSEHTVKSHLYNVYKKIGVRNRLEA 208 >gi|49078606|gb|AAT49801.1| PA4196 [synthetic construct] Length = 215 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L GYTS E+AE+L +SV TV+ Y ++ A + + AI G Sbjct: 144 SLTPRERDVLLPLVRGYTSREVAEQLEVSVKTVDLYHARVMKRMQAQTLPELVGMAIAAG 203 Query: 233 YI 234 + Sbjct: 204 LV 205 >gi|15964305|ref|NP_384658.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307307041|ref|ZP_07586780.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307320121|ref|ZP_07599541.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15073482|emb|CAC45124.1| Transcriptional regulatory protein [Sinorhizobium meliloti 1021] gi|306894167|gb|EFN24933.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306901981|gb|EFN32580.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 215 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 39/64 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT +++ L + +G +++IA +LG+S T+ A++ + +KL+ +R QA+ + + Sbjct: 150 QTLTPQQSRVLSMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAVIQLSKL 209 Query: 232 GYIC 235 G + Sbjct: 210 GTVA 213 >gi|325110990|ref|YP_004272058.1| LuxR family transcriptional regulator [Planctomyces brasiliensis DSM 5305] gi|324971258|gb|ADY62036.1| two component transcriptional regulator, LuxR family [Planctomyces brasiliensis DSM 5305] Length = 228 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 35/67 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ SA L++RE + G G T+ +IAEKL LS TV Y + KL+ N + Sbjct: 157 ERPKSALETLSDRELEVFEQIGHGVTTRQIAEKLHLSPKTVETYRENIKHKLNLANATEL 216 Query: 225 IAKAIRF 231 A+++ Sbjct: 217 TQHAVQW 223 >gi|304311655|ref|YP_003811253.1| Two-component response regulator [gamma proteobacterium HdN1] gi|301797388|emb|CBL45608.1| Two-component response regulator [gamma proteobacterium HdN1] Length = 207 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 2/60 (3%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE + L G+ S+ IA+KLG+SV TV + + T KL + +Q + + + GY Sbjct: 149 LTPREAQIMNLVCIGHLSKTIADKLGISVKTVEMHRANLTAKL-GIRSVQELVR-LNLGY 206 >gi|182435647|ref|YP_001823366.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464163|dbj|BAG18683.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 222 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 9/116 (7%) Query: 129 NGYVIFTSEF--LMLANEVIIEAHGACYQVITDFL--ELFKKRSSA-----ARNLTERET 179 +G+++ + F L+ A V+ H IT L E ++R SA LT RE Sbjct: 101 SGFLLKDATFPELLHAVRVVAGGHALLAPEITGRLIAEFTRQRVSAPPPRSVDGLTAREV 160 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L G ++ +IA++L ++ HTV ++ K+ +R QA+ A G + Sbjct: 161 EVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYERGLVA 216 >gi|218235485|ref|YP_002366962.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264] gi|228952605|ref|ZP_04114681.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229069791|ref|ZP_04203074.1| DNA-binding response regulator [Bacillus cereus F65185] gi|229079433|ref|ZP_04211974.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|229150487|ref|ZP_04278703.1| DNA-binding response regulator [Bacillus cereus m1550] gi|218163442|gb|ACK63434.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264] gi|228632980|gb|EEK89593.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228703890|gb|EEL56335.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228713326|gb|EEL65218.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228807071|gb|EEM53614.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 213 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|158315636|ref|YP_001508144.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111041|gb|ABW13238.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 249 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT+RE L G T+ EIA L +S+ TV ++ S KL A NR++ Sbjct: 176 LTDREEQVLATVAGGRTNSEIAADLHISLSTVKTHIASLMAKLGARNRVE 225 >gi|107102113|ref|ZP_01366031.1| hypothetical protein PaerPA_01003162 [Pseudomonas aeruginosa PACS2] Length = 126 Score = 37.7 bits (86), Expect = 1.1, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LT RE+ ++L DGY+++EIA++L LS+ T+ + KL+ Sbjct: 60 LTARESDVIRLMLDGYSNKEIADRLTLSIATIKVHRRHIYAKLN 103 >gi|326331785|ref|ZP_08198073.1| putative large transcriptional regulator [Nocardioidaceae bacterium Broad-1] gi|325950584|gb|EGD42636.1| putative large transcriptional regulator [Nocardioidaceae bacterium Broad-1] Length = 960 Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 32/57 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + R L+ RE +QL G T++++A+ L +S TV+ ++ +A KLD +R Sbjct: 885 RGRRGYGEQLSPREVEVIQLVARGMTNKQVADTLFISPRTVHRHVSTAMRKLDVSSR 941 >gi|326776281|ref|ZP_08235546.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326656614|gb|EGE41460.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 222 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 9/116 (7%) Query: 129 NGYVIFTSEF--LMLANEVIIEAHGACYQVITDFL--ELFKKRSSA-----ARNLTERET 179 +G+++ + F L+ A V+ H IT L E ++R SA LT RE Sbjct: 101 SGFLLKDATFPELLHAVRVVAGGHALLAPEITGRLIAEFTRQRVSAPPPRSVDGLTAREV 160 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L G ++ +IA++L ++ HTV ++ K+ +R QA+ A G + Sbjct: 161 EVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYERGLVA 216 >gi|294786837|ref|ZP_06752091.1| putative two-component system, response regulator [Parascardovia denticolens F0305] gi|294485670|gb|EFG33304.1| putative two-component system, response regulator [Parascardovia denticolens F0305] Length = 242 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTE E +L +G T++EIAEKL + +V + + KLD NR + +A Sbjct: 179 LTESEKRIAKLLAEGLTNKEIAEKLVMENSSVRSSISRMLKKLDMKNRTEVVA 231 >gi|294630991|ref|ZP_06709551.1| two-component system response regulator [Streptomyces sp. e14] gi|292834324|gb|EFF92673.1| two-component system response regulator [Streptomyces sp. e14] Length = 244 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 183 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 231 >gi|332666002|ref|YP_004448790.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332334816|gb|AEE51917.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 207 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 2/99 (2%) Query: 130 GYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G+++ F + L E+ + H A L L K LT+RE ++L Sbjct: 101 GFIVKPFNEQTLYATIEIALSNHAAQANRHVPELTLDKLNKHLLAPLTDREFEVVRLLYA 160 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 G T+++IA +L ++++T+ ++ +A KLD +R A+A Sbjct: 161 GKTNQQIAAELYIAMNTLKKHINNAYFKLDVGSRTTAVA 199 >gi|307332414|ref|ZP_07611482.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306881948|gb|EFN13066.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 240 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 179 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 227 >gi|258654847|ref|YP_003204003.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558072|gb|ACV81014.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 233 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTE+E L L G+G T+ +IAE + L+ TV Y+ S KL R QA Sbjct: 172 LTEQERRVLALIGEGMTNRQIAEAMFLAEKTVKNYVSSLLAKLGLQRRTQA 222 >gi|302535180|ref|ZP_07287522.1| two component system response regulator [Streptomyces sp. C] gi|302444075|gb|EFL15891.1| two component system response regulator [Streptomyces sp. C] Length = 225 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE + L G ++ EIA +L LS TV ++G KL +R+Q + A G Sbjct: 156 RLTDREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETG 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|224283409|ref|ZP_03646731.1| response regulator of two-component system [Bifidobacterium bifidum NCIMB 41171] gi|311064648|ref|YP_003971373.1| transcriptional regulator [Bifidobacterium bifidum PRL2010] gi|313140564|ref|ZP_07802757.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|310866967|gb|ADP36336.1| Transcriptional regulatory protein [Bifidobacterium bifidum PRL2010] gi|313133074|gb|EFR50691.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 223 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 6/74 (8%) Query: 155 QVITDF-LELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 Q+I D ++ + R AR L RE + LA +G T+ EIA ++ +S T A+L Sbjct: 141 QLINDLSMQRPQSRRDEARALLDTLPSREREAVLLAAEGCTNAEIAGRMFISERTAKAHL 200 Query: 210 GSATVKLDAVNRIQ 223 SA KLD + R+Q Sbjct: 201 SSAADKLD-MGRVQ 213 >gi|152987067|ref|YP_001346289.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150962225|gb|ABR84250.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 212 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L GYTS E+AE+L +SV TV+ Y ++ A + AI G Sbjct: 142 SLTPRERDVLLPLVRGYTSREVAEQLEVSVKTVDLYRARVMRRMQAQTLADLVGMAIAAG 201 Query: 233 YI 234 + Sbjct: 202 LV 203 >gi|106879460|emb|CAJ20013.1| putative DNA binding regulatory protein [Streptomyces cattleya] Length = 225 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ EIA L L TV +++ KL NR QAIA A R G Sbjct: 156 GLTGRELEVLRLMAAGMSNAEIAGHLSLGEATVKSHVSRLLGKLGLRNRSQAIACAYRTG 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|89890302|ref|ZP_01201812.1| putative transcriptional regulator, luxR family [Flavobacteria bacterium BBFL7] gi|89517217|gb|EAS19874.1| putative transcriptional regulator, luxR family [Flavobacteria bacterium BBFL7] Length = 230 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +R + + LT+RE L+L G +++E++E L LSVH+V+ + + KLD Sbjct: 162 ERWNKFQTLTKREKEILKLFAKGKSNKEVSEILILSVHSVHTHKKNIYQKLD 213 >gi|30020351|ref|NP_831982.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|229109704|ref|ZP_04239290.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229144857|ref|ZP_04273254.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|29895902|gb|AAP09183.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|228638579|gb|EEK95012.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228673745|gb|EEL29003.1| DNA-binding response regulator [Bacillus cereus Rock1-15] Length = 213 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|15965995|ref|NP_386348.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307314667|ref|ZP_07594266.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307322066|ref|ZP_07601443.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15075265|emb|CAC46821.1| Transcription regulator luxR family [Sinorhizobium meliloti 1021] gi|306892302|gb|EFN23111.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306899000|gb|EFN29645.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 267 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 NLTERE + ++L G++SE I KLG+S TV + + KL ++ Q ++ I+ Sbjct: 206 NLTEREAAIIELVLQGHSSESIGLKLGISTGTVKVHRRNVYRKLGISSQTQLLSLYIK 263 >gi|150018971|ref|YP_001311225.1| LuxR family transcriptional regulator [Clostridium beijerinckii NCIMB 8052] gi|149905436|gb|ABR36269.1| regulatory protein, LuxR [Clostridium beijerinckii NCIMB 8052] Length = 822 Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE ++L GY EI++KL +++ TV ++ S KL+ N+ AI + G Sbjct: 762 LTPREIEIMKLVYHGYKQSEISDKLNIALVTVKKHIASVYCKLNVRNKTIAINQLKEKGI 821 Query: 234 I 234 I Sbjct: 822 I 822 >gi|328883286|emb|CCA56525.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 225 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE + L G ++ EIA +L LS TV ++G KL +R+Q + A G Sbjct: 156 RLTDREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYESG 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|300855110|ref|YP_003780094.1| putative regulatory protein [Clostridium ljungdahlii DSM 13528] gi|300435225|gb|ADK14992.1| predicted regulatory protein [Clostridium ljungdahlii DSM 13528] Length = 885 Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++RE L L G + EIA++L ++ T +++ + KL NRI+A+AKA G Sbjct: 825 ISKREREVLMLIEKGAKNSEIAKRLFITESTAKSHILNIFSKLSVRNRIEAVAKAKEIGI 884 Query: 234 I 234 I Sbjct: 885 I 885 >gi|271962179|ref|YP_003336375.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505354|gb|ACZ83632.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 218 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 30/51 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT+RE L G T+ EIA++ +S+ TV +++ S KL A NR++ Sbjct: 155 TLTDREEQILATVARGRTNSEIADEFYISLSTVKSHIASLMAKLGARNRVE 205 >gi|302530326|ref|ZP_07282668.1| two-component system response regulator [Streptomyces sp. AA4] gi|302439221|gb|EFL11037.1| two-component system response regulator [Streptomyces sp. AA4] Length = 215 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 3/94 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +G+ V+ +F+ +V+ QV+ +L ++R+ L+ RE L Sbjct: 103 VGYLLKDRVVDVEDFIGTLRQVVDGGTAVDPQVVR---QLLRRRADPLARLSAREREVLS 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L +G+++ IA +L +S V ++GS KLD Sbjct: 160 LIAEGHSNASIARRLVVSDAAVGKHVGSILSKLD 193 >gi|258652603|ref|YP_003201759.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555828|gb|ACV78770.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 363 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 9/98 (9%) Query: 143 NEVIIEAHGACYQVIT---DFLELFKKRSSA------ARNLTERETSCLQLAGDGYTSEE 193 N +++ A Q +T DFL ++ + A A+ L+ RE L LA G ++E Sbjct: 263 NHILLADEPAWPQFVTAVRDFLADDRESAPAPARVPLAQVLSGRELQVLGLAAQGRDNDE 322 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 IA +L LSV TV +L + KL+ + A R Sbjct: 323 IARRLTLSVRTVERHLQNIYAKLEVQGKSARTAAVARL 360 >gi|228908028|ref|ZP_04071877.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228851625|gb|EEM96430.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 209 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205 >gi|310287681|ref|YP_003938939.1| transcriptional regulator, LuxR family [Bifidobacterium bifidum S17] gi|309251617|gb|ADO53365.1| transcriptional regulator, LuxR family [Bifidobacterium bifidum S17] Length = 255 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G +++EIA+KL +S+ T ++ K++A +R+QA+ A G Sbjct: 195 LTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHILAKINARDRVQAVVFAYDNGL 254 Query: 234 I 234 + Sbjct: 255 V 255 >gi|239994578|ref|ZP_04715102.1| putative transcriptional regulator, LuxR family protein [Alteromonas macleodii ATCC 27126] Length = 225 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE + + DG ++EIA+ L +SV+TV ++ S K D NR++ I Sbjct: 159 LTKRELAITRKIADGAQNQEIADCLHISVNTVKTHVYSIFRKTDCRNRVELI 210 >gi|153007753|ref|YP_001368968.1| two component LuxR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151559641|gb|ABS13139.1| two component transcriptional regulator, LuxR family [Ochrobactrum anthropi ATCC 49188] Length = 214 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT ++T L + +G +++IA +LG+S TV A++ + KL +R QA+ R Sbjct: 147 RTLTPQQTRVLTMLAEGLLNKQIAYELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRI 206 Query: 232 G 232 G Sbjct: 207 G 207 >gi|170736721|ref|YP_001777981.1| ATP-dependent transcription regulator LuxR [Burkholderia cenocepacia MC0-3] gi|169818909|gb|ACA93491.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia cenocepacia MC0-3] Length = 921 Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A NL+ RE L G +++EIA L ++ T+ +L + KL+ +RIQA+ Sbjct: 847 RPGATGNLSARELEILDYVARGLSNKEIARALRVAPETIKWHLKNIFEKLNVTSRIQAVR 906 Query: 227 KAI 229 + Sbjct: 907 SGL 909 >gi|72162981|ref|YP_290638.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71916713|gb|AAZ56615.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 233 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 28/49 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +E+A +L +SV TV ++ S KL NR Sbjct: 172 RLTQREREVLRLIARGYAYKEVARELFISVKTVETHVSSVLRKLQLSNR 220 >gi|107027364|ref|YP_624875.1| ATP-dependent transcription regulator LuxR [Burkholderia cenocepacia AU 1054] gi|116693926|ref|YP_839459.1| ATP-dependent transcription regulator LuxR [Burkholderia cenocepacia HI2424] gi|105896738|gb|ABF79902.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia cenocepacia AU 1054] gi|116651926|gb|ABK12566.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia cenocepacia HI2424] Length = 921 Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A NL+ RE L G +++EIA L ++ T+ +L + KL+ +RIQA+ Sbjct: 847 RPGATGNLSARELEILDYVARGLSNKEIARALRVAPETIKWHLKNIFEKLNVTSRIQAVR 906 Query: 227 KAI 229 + Sbjct: 907 SGL 909 >gi|331700012|ref|YP_004336251.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954701|gb|AEA28398.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 932 Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +T RET L L +G + EIAE+L LS TV ++ K + R + +A A R Sbjct: 869 ALGVTSRETDVLLLVAEGCGNREIAERLFLSPRTVEKHVERLLAKTGSQRRAELVAAATR 928 Query: 231 F 231 Sbjct: 929 L 929 >gi|282853480|ref|ZP_06262817.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282582933|gb|EFB88313.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314922223|gb|EFS86054.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314965305|gb|EFT09404.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|315104424|gb|EFT76400.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327329402|gb|EGE71162.1| DNA-binding response regulator [Propionibacterium acnes HL103PA1] Length = 206 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L+LA G + IA +L LSV TV ++ SA K A NR +A A G+ Sbjct: 146 LSDREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARHRGW 205 Query: 234 I 234 + Sbjct: 206 L 206 >gi|254383319|ref|ZP_04998671.1| AbsA2 [Streptomyces sp. Mg1] gi|194342216|gb|EDX23182.1| AbsA2 [Streptomyces sp. Mg1] Length = 219 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 167 RSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 R AAR L+ERE L L G+G ++ + +L +S TV Y+ KL NR+ Sbjct: 149 RGEAARRRVAELSERERGVLALLGEGLSNADAGRRLHMSEATVKTYVSRILAKLGCENRV 208 Query: 223 QA 224 QA Sbjct: 209 QA 210 >gi|167839763|ref|ZP_02466447.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 257 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 32/63 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 AR LTERE L T+++IA LGLS T+ Y+ + K A ++ + I A Sbjct: 158 ARELTERERQVLFFLARNKTAKDIANILGLSARTIEQYMENLRCKFSASSKNELIDLAAG 217 Query: 231 FGY 233 GY Sbjct: 218 AGY 220 >gi|146302462|ref|YP_001197053.1| two component LuxR family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146156880|gb|ABQ07734.1| two component transcriptional regulator, LuxR family [Flavobacterium johnsoniae UW101] Length = 209 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 7/91 (7%) Query: 144 EVIIEAH--GA--CYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAE 196 + I+EAH GA + + L+ F++ ++L T E L+L G +EIA+ Sbjct: 114 QAILEAHKGGAPMSFTIAKRVLQHFQESKVQVQSLALLTVTEKEVLELLAQGLLYKEIAD 173 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 K +++ T+ ++G+ KL N+I+AI K Sbjct: 174 KKNVTIDTIKKHIGNIYRKLQVSNKIEAINK 204 >gi|332142663|ref|YP_004428401.1| putative transcriptional regulator, LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552685|gb|AEA99403.1| putative transcriptional regulator, LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 225 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S+ LT+RE + + DG ++EIA+ L +SV+TV ++ S K D NR++ I Sbjct: 154 SSTTVLTKRELAITRKIADGAQNQEIADCLHISVNTVKTHVYSIFRKTDCRNRVELI 210 >gi|71066001|ref|YP_264728.1| LuxR family transcriptional regulator [Psychrobacter arcticus 273-4] gi|71038986|gb|AAZ19294.1| probable transcriptional regulator, luxR family [Psychrobacter arcticus 273-4] Length = 921 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R A + L ++E L++ G +++EIA L + V+TV YL + L R+QA Sbjct: 851 QARELAVKTLKKKEILILEMLEKGLSNKEIARNLNIGVNTVKWYLKAIYNTLGVSRRVQA 910 Query: 225 IAKA 228 + +A Sbjct: 911 VIEA 914 >gi|83312959|ref|YP_423223.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82947800|dbj|BAE52664.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 225 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 37/67 (55%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA L+ RE L+L +GYT++++A LG+SV TV+ + + KL + A A Sbjct: 159 SAVAPLSGRERQVLKLLAEGYTNQKVAGILGISVKTVDRHRENIMNKLGVRTPVALAAIA 218 Query: 229 IRFGYIC 235 +R G + Sbjct: 219 LREGLVV 225 >gi|326939967|gb|AEA15863.1| two-component response regulator yhcZ [Bacillus thuringiensis serovar chinensis CT-43] Length = 213 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|326382365|ref|ZP_08204057.1| LuxR family two component transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326199095|gb|EGD56277.1| LuxR family two component transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 215 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L ++ S +TERE L+L G ++E+A+ + +S TV A+L KL R Sbjct: 141 LVRRSSQPGPTITEREVEVLELLARGMGNKELAKTMFISEGTVKAHLAHVYGKLGVDTRA 200 Query: 223 QAIAKAI 229 A+A AI Sbjct: 201 GAVAAAI 207 >gi|313820373|gb|EFS58087.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313822823|gb|EFS60537.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|314925260|gb|EFS89091.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] Length = 210 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +LT RE L+ + G ++ +IAE L +S TV +L KL +R Sbjct: 138 LMARMRSPRTSLTARELDVLEASAQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVSSRS 197 Query: 223 QAIAKAIRFGYI 234 A+AKA G+I Sbjct: 198 AAVAKARDIGFI 209 >gi|310287762|ref|YP_003939020.1| two component transcriptional regulator, LuxR family [Bifidobacterium bifidum S17] gi|309251698|gb|ADO53446.1| two component transcriptional regulator, LuxR family [Bifidobacterium bifidum S17] Length = 223 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 6/74 (8%) Query: 155 QVITDF-LELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 Q+I D ++ + R AR L RE + LA +G T+ EIA ++ +S T A+L Sbjct: 141 QLINDLSMQRPQSRRDEARAMLDTLPSREREAVLLAAEGCTNAEIAGRMFISERTAKAHL 200 Query: 210 GSATVKLDAVNRIQ 223 SA KLD + R+Q Sbjct: 201 SSAADKLD-MGRVQ 213 >gi|284045220|ref|YP_003395560.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949441|gb|ADB52185.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 223 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G T+ EIAE+L LS TV ++G KL +R+QA+ A + G Sbjct: 160 ELTAREHEVLLELAAGRTNAEIAERLVLSEATVKTHVGRILGKLALRDRVQAVILAYQIG 219 Query: 233 YI 234 + Sbjct: 220 LV 221 >gi|256787147|ref|ZP_05525578.1| two component system response regulator [Streptomyces lividans TK24] gi|289771044|ref|ZP_06530422.1| two-component system response regulator [Streptomyces lividans TK24] gi|289701243|gb|EFD68672.1| two-component system response regulator [Streptomyces lividans TK24] Length = 222 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L + G G ++ EIA++L L T+ Y+ + +L+ NR+QA A G Sbjct: 155 LTKREQEVLGMLGAGLSNAEIAQRLHLVEGTIKTYVSAIFTQLEVRNRVQAAIIAYEAGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|86739019|ref|YP_479419.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86565881|gb|ABD09690.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 214 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R LT RE + L G G +++EIA +L +S T ++ VKL A +R Q Sbjct: 152 RGLTVREREVMSLVGHGLSNDEIAARLVISPATARTHVSRVMVKLAARDRAQ 203 >gi|603067|gb|AAA66239.1| VsrC [Ralstonia solanacearum] Length = 220 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT R+ S L L +G ++ IA +LGL+ +TV ++ + +L RIQ I++ Sbjct: 151 TPAELGLTPRQGSVLALLLEGLPNKSIARQLGLTENTVKEHVSAILQRLGVRTRIQIISR 210 Query: 228 AIRF 231 RF Sbjct: 211 MERF 214 >gi|24213516|ref|NP_710997.1| response regulator containing a signal receiver domain and a DNA-binding domain [Leptospira interrogans serovar Lai str. 56601] gi|45658638|ref|YP_002724.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24194296|gb|AAN48015.1| response regulator containing a signal receiver domain and a DNA-binding domain [Leptospira interrogans serovar Lai str. 56601] gi|45601882|gb|AAS71361.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 233 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 10/116 (8%) Query: 129 NGYVIF-TSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARN---LTERE 178 +GY++ TS L LA +I GA ++I F + + ++ +N LT+R+ Sbjct: 111 SGYLLKDTSPELFLAELKVIVLGGAPLTPRIADKIIRKFTKKEESKNQPIQNTLGLTKRK 170 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T +IA++L +S HTV+ ++ K++ ++ +AI + R G I Sbjct: 171 LQILNFIALGMTVSDIADELDISSHTVSRHIEKIYKKMEVHSKSEAIIRGRRMGII 226 >gi|24378972|ref|NP_720927.1| putative response regulator [Streptococcus mutans UA159] gi|24376861|gb|AAN58233.1|AE014894_10 putative response regulator [Streptococcus mutans UA159] Length = 215 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL +R QA+ A + Sbjct: 148 EDLTARERDILALLAKGYDNQTIADELFISLKTVKTHVSNILSKLQVDDRTQAVVYAFQ 206 >gi|332666745|ref|YP_004449533.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332335559|gb|AEE52660.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 217 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 11/104 (10%) Query: 142 ANEVIIEAHGA-------CYQVITDFLEL-FKKRSS---AARNLTERETSCLQLAGDGYT 190 NE++ AH C +VI LE F K + A L+ RE +QL+ G Sbjct: 110 TNEILDAAHATLKGDKFFCTRVIDCLLEKSFSKDTQVNCAPTPLSSREIEIVQLSARGLI 169 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EIA+ L LS HTV + + KL + + + A+ G + Sbjct: 170 AKEIADTLNLSTHTVYTHRKNIMKKLQINSSSELVLYAVSKGLV 213 >gi|229190347|ref|ZP_04317348.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228593131|gb|EEK50949.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] Length = 209 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205 >gi|262202074|ref|YP_003273282.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262085421|gb|ACY21389.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 218 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 31/67 (46%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K R LT +E L G+G T+ +IAE++ L+ T+ Y+ KLD R Q Sbjct: 146 KDRPDPLAELTSQEREVFNLIGEGMTNRQIAERMFLAEKTIKNYVSRILAKLDMQRRTQV 205 Query: 225 IAKAIRF 231 A + Sbjct: 206 AVMATKL 212 >gi|224283310|ref|ZP_03646632.1| two component transcriptional regulator, LuxR family protein [Bifidobacterium bifidum NCIMB 41171] Length = 240 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G +++EIA+KL +S+ T ++ K++A +R+QA+ A G Sbjct: 180 LTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHILAKINARDRVQAVVFAYDNGL 239 Query: 234 I 234 + Sbjct: 240 V 240 >gi|254390623|ref|ZP_05005837.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294812218|ref|ZP_06770861.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440627|ref|ZP_08215361.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197704324|gb|EDY50136.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324817|gb|EFG06460.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 228 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G +++EI E+L +S TV ++ A KL A +R Q + A G Sbjct: 163 LTGREREVLVLVAGGLSNDEIGERLDVSPLTVKTHVNRAMAKLGARDRAQLVVTAYESGL 222 Query: 234 I 234 + Sbjct: 223 V 223 >gi|311103650|ref|YP_003976503.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310758339|gb|ADP13788.1| bacterial regulatory protein, LuxR family protein 1 [Achromobacter xylosoxidans A8] Length = 212 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 3/96 (3%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAE 196 L A E + EA A V + L L + AA R LT R+ L L DG ++EI+E Sbjct: 112 LAAALEAVSEAQPAHRSVSSSAL-LAGGQDEAALLRALTPRQNEVLCLMCDGLRNKEISE 170 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L ++ TV ++ + L +NR QA A R G Sbjct: 171 RLNMTEKTVKTHVSAILGTLGVLNRTQATLVARRGG 206 >gi|300785664|ref|YP_003765955.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299795178|gb|ADJ45553.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 345 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+ERE L+L G + +EIA +LG+S HT + ++ + KL +R Sbjct: 284 ELSERELDVLRLVAHGLSDQEIARRLGISAHTAHRHVSNIRGKLGVSSR 332 >gi|299538173|ref|ZP_07051458.1| competence protein A [Lysinibacillus fusiformis ZC1] gi|298726375|gb|EFI66965.1| competence protein A [Lysinibacillus fusiformis ZC1] Length = 211 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT++E S L+ GY+++EIA++L LS+ + L KL +R +A+ + IR Sbjct: 146 LTQKEISILRSLIKGYSNQEIADELFLSIRAIEYNLTKIYKKLGVNSRTEAVTEVIRL 203 >gi|288923880|ref|ZP_06417961.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288344773|gb|EFC79221.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 222 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ EIA +L ++ TV +++G+ KL +R+QA+ A G Sbjct: 156 LTPREREVLVLVARGLSNTEIAGRLVVTEATVKSHVGAILTKLGLRDRVQAVVLAYENGV 215 Query: 234 IC 235 + Sbjct: 216 VV 217 >gi|228991252|ref|ZP_04151210.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] gi|228997351|ref|ZP_04156973.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|229004976|ref|ZP_04162703.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228756324|gb|EEM05642.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228762443|gb|EEM11368.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|228768476|gb|EEM17081.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] Length = 211 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 151 LTKREKEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKNGV 210 Query: 234 I 234 + Sbjct: 211 V 211 >gi|311745274|ref|ZP_07719059.1| putative nitrate/nitrite DNA-binding response regulator [Algoriphagus sp. PR1] gi|126577803|gb|EAZ82023.1| putative nitrate/nitrite DNA-binding response regulator [Algoriphagus sp. PR1] Length = 214 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +L K+ ++L+ERE LQL T++EIA+KL +S HTV ++ Sbjct: 140 QLQNKKHEILQSLSERELDVLQLIIQELTTQEIADKLFISRHTVESH 186 >gi|21221661|ref|NP_627440.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|1293660|gb|AAB08053.1| AbsA2 [Streptomyces coelicolor] gi|4490635|emb|CAB38597.1| two component system response regulator [Streptomyces coelicolor A3(2)] Length = 222 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L + G G ++ EIA++L L T+ Y+ + +L+ NR+QA A G Sbjct: 155 LTKREQEVLGMLGAGLSNAEIAQRLHLVEGTIKTYVSAIFTQLEVRNRVQAAIIAYEAGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|319942697|ref|ZP_08017003.1| hypothetical protein HMPREF9464_02222 [Sutterella wadsworthensis 3_1_45B] gi|319803707|gb|EFW00648.1| hypothetical protein HMPREF9464_02222 [Sutterella wadsworthensis 3_1_45B] Length = 216 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 7/73 (9%) Query: 161 LELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 L+ FK+ R +LT RE + LA G ++EIA+ LG+SV TV Y +A Sbjct: 132 LDAFKREHDRRRMERQVLSLTGREREVIDLAVKGMQNKEIADLLGISVTTVKMYRANAFQ 191 Query: 215 KLDAVNRIQAIAK 227 KL VN I A ++ Sbjct: 192 KL-GVNTILAASQ 203 >gi|319795269|ref|YP_004156909.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315597732|gb|ADU38798.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 228 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 167 RSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ A R L T RE+ L G G +S++IA LGLSV TV A+ S +L + + I Sbjct: 156 RNQAPRPLLTPRESEILTALGRGESSKQIARDLGLSVRTVEAHRQSIKRRLGIEGQAELI 215 Query: 226 AKAI 229 A+ Sbjct: 216 KYAV 219 >gi|291302996|ref|YP_003514274.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572216|gb|ADD45181.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 213 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 31/50 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ERE ++ G T+ EIAE+L ++V TV ++L S K++ NR + Sbjct: 152 LSERELDVVERVARGRTNNEIAEELFVAVSTVKSHLESVRAKINVRNRTE 201 >gi|229819214|ref|YP_002880740.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565127|gb|ACQ78978.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 209 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 35/69 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ A L+ RE L+L DG T+ + A+ LG++ TV +L KL +R A+ Sbjct: 140 RQQPAPAALSGREVDVLRLVADGRTNRQAAQLLGVTEATVKTHLLHVYAKLGVPDRAAAV 199 Query: 226 AKAIRFGYI 234 A R G + Sbjct: 200 AAGYRSGLL 208 >gi|291456580|ref|ZP_06595970.1| putative two-component regulator [Bifidobacterium breve DSM 20213] gi|291381857|gb|EFE89375.1| putative two-component regulator [Bifidobacterium breve DSM 20213] Length = 268 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A G Sbjct: 208 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 267 Query: 234 I 234 + Sbjct: 268 V 268 >gi|27802474|gb|AAO21112.1| TraR [Rhizobium leguminosarum bv. viciae] Length = 234 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 31/63 (49%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE CL A G ++ E A G++ TV YL A KL+A Q +A A Sbjct: 172 RLLSPREAMCLMWAARGKSAPETAMLTGINPRTVQHYLDKAREKLEAATVPQLVAIAKDH 231 Query: 232 GYI 234 G + Sbjct: 232 GLV 234 >gi|158315520|ref|YP_001508028.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158110925|gb|ABW13122.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 226 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 6/90 (6%) Query: 151 GACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 A +I FL + ++A N LT RE + L +GY++ +IA +L +S T Sbjct: 131 AATRALIARFLATPEPTATARTNPAVLTTLTAREREVMVLVAEGYSNHDIARRLVISPLT 190 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ A KL+A +R Q + A + G + Sbjct: 191 ARTHVHRAMTKLEARDRAQLVVIAYQSGLL 220 >gi|302551299|ref|ZP_07303641.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468917|gb|EFL32010.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 31/62 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L L G G + EIAE LGLS T ++ KL A +R Q + A G Sbjct: 155 LSDREREVLTLVGRGLNNTEIAESLGLSPLTAKTHVSRIMGKLAARDRAQLVIVAYESGL 214 Query: 234 IC 235 + Sbjct: 215 VT 216 >gi|254293153|ref|YP_003059176.1| LuxR family transcriptional regulator [Hirschia baltica ATCC 49814] gi|254041684|gb|ACT58479.1| transcriptional regulator, LuxR family [Hirschia baltica ATCC 49814] Length = 248 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+R+ LQ +G T ++ A++LG+SV V +L +++A QAI A G Sbjct: 180 DLTKRQIEVLQAKANGQTDKQTADRLGVSVKAVEGHLTKIRKQMNARTTSQAIGLARGKG 239 Query: 233 YI 234 I Sbjct: 240 LI 241 >gi|239816962|ref|YP_002945872.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803539|gb|ACS20606.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 214 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 1/64 (1%) Query: 167 RSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ A R L T RE+ L G G +S++IA LGLSV TV A+ S +L + + I Sbjct: 142 RNQAPRPLLTPRESEILSALGRGESSKQIARDLGLSVRTVEAHRQSIKRRLGIEGQAELI 201 Query: 226 AKAI 229 A+ Sbjct: 202 KYAV 205 >gi|228939396|ref|ZP_04101986.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972275|ref|ZP_04132888.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978889|ref|ZP_04139256.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228780846|gb|EEM29057.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228787459|gb|EEM35425.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820291|gb|EEM66326.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 209 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205 >gi|218886123|ref|YP_002435444.1| LuxR family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757077|gb|ACL07976.1| two component transcriptional regulator, LuxR family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 216 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 12/114 (10%) Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNL-TERE 178 +GYV+ +S+ L+ A E ++ G Y +I DFL ++ S + +L ++RE Sbjct: 100 DGYVLKNVSSDILVQAMETVLS--GRRYISPEISELLIEDFLRHGRRESGSLLDLLSDRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+L +G+ ++ IA+KL +S TV + + KL A + + ++ AI G Sbjct: 158 KQVLKLVAEGHGNKMIADKLCISHKTVEKHKANLKRKLGADSTAELVSFAIEHG 211 >gi|182413103|ref|YP_001818169.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840317|gb|ACB74569.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 209 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 48/106 (45%), Gaps = 2/106 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 GYV+ +S L + A G + + D RSS LT RE LQ G Sbjct: 104 RGYVLKSSTGEGLIPAIRAVAAGEPW-IPNDVATRLAMRSSY-EELTSREIQVLQEIAKG 161 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EIA L +S +TV +L + KL R +A+ A++ G I Sbjct: 162 KANKEIAAVLAISEYTVKDHLKNIMGKLHVAVRTEAVTAAVQRGII 207 >gi|206971450|ref|ZP_03232400.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH1134] gi|206733435|gb|EDZ50607.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH1134] Length = 213 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|167562212|ref|ZP_02355128.1| DNA-binding response regulator [Burkholderia oklahomensis EO147] gi|167569457|ref|ZP_02362331.1| DNA-binding response regulator [Burkholderia oklahomensis C6786] Length = 279 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L +++ SA L+ R+ ++ G T++ IA LG+S TV +L S +L A NR Sbjct: 147 QLPRRKRSACSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNR 206 Query: 222 IQAIA 226 A+A Sbjct: 207 AAAVA 211 >gi|119025623|ref|YP_909468.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118765207|dbj|BAF39386.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 249 Score = 37.7 bits (86), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ Sbjct: 189 LTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAV 240 >gi|254249381|ref|ZP_04942701.1| ATP-dependent transcriptional regulator [Burkholderia cenocepacia PC184] gi|124875882|gb|EAY65872.1| ATP-dependent transcriptional regulator [Burkholderia cenocepacia PC184] Length = 743 Score = 37.7 bits (86), Expect = 1.2, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A NL+ RE L G +++EIA L ++ T+ +L + KL+ +RIQA+ Sbjct: 669 RPGATGNLSARELEILDYVARGLSNKEIARALRVAPETIKWHLKNIFEKLNVTSRIQAVR 728 Query: 227 KAI 229 + Sbjct: 729 SGL 731 >gi|298252386|ref|ZP_06976187.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297545702|gb|EFH79572.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 202 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +RE L+L +G +++EIA+ L ++ T+ +L KL+ +R QAI A + G+ Sbjct: 141 LNKRELEVLRLLAEGRSNQEIADTLIVAKSTIKWHLKQIYSKLNVHSRTQAIVCARQIGF 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|288917724|ref|ZP_06412087.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288350939|gb|EFC85153.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 250 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ + A +LG+S TV ++ + KL NR++ A+R G Sbjct: 186 RLTAREVEVLRLVAKGLSARDAARQLGVSHRTVQNHVHNVLAKLQLRNRVELTRFALREG 245 Query: 233 Y 233 Y Sbjct: 246 Y 246 >gi|256785730|ref|ZP_05524161.1| two-component system DNA-binding response regulator [Streptomyces lividans TK24] gi|289769622|ref|ZP_06529000.1| two-component system DNA-binding response regulator [Streptomyces lividans TK24] gi|289699821|gb|EFD67250.1| two-component system DNA-binding response regulator [Streptomyces lividans TK24] Length = 251 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 190 RLTQREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNR 238 >gi|227820767|ref|YP_002824737.1| predicted two-component transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] gi|227339766|gb|ACP23984.1| predicted two-component transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] Length = 215 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 39/64 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT +++ L + +G +++IA +LG+S T+ A++ + +KL+ +R QA+ + + Sbjct: 150 QTLTPQQSRVLSMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAVIQLSKL 209 Query: 232 GYIC 235 G + Sbjct: 210 GSVA 213 >gi|119504418|ref|ZP_01626498.1| putative LuxR-family transcriptional regulator [marine gamma proteobacterium HTCC2080] gi|119459926|gb|EAW41021.1| putative LuxR-family transcriptional regulator [marine gamma proteobacterium HTCC2080] Length = 173 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE G G ++EIA +LGL T+ A+L + KL +R+Q Sbjct: 112 ELTEREYQVAMAVGKGLNNKEIASQLGLGERTIKAHLTTTFEKLHVRDRVQ 162 >gi|7248706|gb|AAF43630.1| unknown [Streptomyces peucetius] Length = 67 Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G+G ++ E+AE+L ++ TV ++ KL+ +R+QA A G Sbjct: 8 LTRREREVLSCLGEGLSNAEVAERLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELG 66 >gi|297192611|ref|ZP_06910009.1| two-component system DNA-binding response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151436|gb|EFH31165.1| two-component system DNA-binding response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 229 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 168 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 216 >gi|296138380|ref|YP_003645623.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026514|gb|ADG77284.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 212 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE A +G ++ EIAEK L+ TV ++ KL +R+Q + A R G Sbjct: 151 RLTEREQQIFVRAAEGLSNAEIAEKEFLAETTVKTHVSRVLTKLGLRDRVQLVVYAHRHG 210 Query: 233 YI 234 + Sbjct: 211 LV 212 >gi|289812420|ref|ZP_06543049.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 170 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D+L + S + L+ R+ LQ+ G ++++I L +S TV A+L S +LD Sbjct: 97 DWLNSTELESHDIKALSARQREILQMLAAGESNKQIGRALNISTGTVKAHLESLYRRLDV 156 Query: 219 VNRIQA 224 NR QA Sbjct: 157 KNRTQA 162 >gi|219685916|ref|ZP_03540719.1| conserved hypothetical protein [Borrelia garinii Far04] gi|219672542|gb|EED29578.1| conserved hypothetical protein [Borrelia garinii Far04] Length = 614 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 42 LDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS 101 + FP ++Q+I L DL S ++ IL+ TY + F +FN L I S+Q++ +E S Sbjct: 210 ISFPFKKQIIRIL---DLSSKNVEKILVRTYDNHFYSYFNEQWLFIGKLSLQDQDFVEKS 266 Query: 102 GQLSVRLEGG 111 ++ + G Sbjct: 267 QRMQLAKNKG 276 >gi|218897232|ref|YP_002445643.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842] gi|218545309|gb|ACK97703.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842] Length = 213 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|111019249|ref|YP_702221.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110818779|gb|ABG94063.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 211 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +R L+E+E + +L G+G T+ EIAE+L L+ T+ Y+ KL R QA Sbjct: 142 RREDPLAELSEQERAVFELIGEGLTNREIAERLFLAEKTIKNYVSRLLSKLGMQRRTQA 200 >gi|75761109|ref|ZP_00741104.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491401|gb|EAO54622.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 219 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 157 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 215 >gi|320158185|ref|YP_004190563.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O] gi|319933497|gb|ADV88360.1| transcriptional regulator VpsT [Vibrio vulnificus MO6-24/O] Length = 212 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 35/60 (58%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + + LT+RE + L G ++++IA KL + +TV +L + K+D NR+QA+ A Sbjct: 142 NVSTKLTKREQQIITLLSLGNSNQQIARKLFVRENTVKTHLHNIFKKIDVKNRVQALIWA 201 >gi|289771965|ref|ZP_06531343.1| two-component system response regulator [Streptomyces lividans TK24] gi|289702164|gb|EFD69593.1| two-component system response regulator [Streptomyces lividans TK24] Length = 210 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ + DG T +IA L LS TV YL +A K NR +A+ A G+ Sbjct: 150 LTARECDVLRASADGATVADIAGALHLSESTVRNYLSAAIGKTGTRNRAEALRAARGQGW 209 Query: 234 I 234 + Sbjct: 210 L 210 >gi|290581010|ref|YP_003485402.1| putative response regulator [Streptococcus mutans NN2025] gi|254997909|dbj|BAH88510.1| putative response regulator [Streptococcus mutans NN2025] Length = 213 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L GY ++ IA++L +S+ TV ++ + KL +R QA+ A + Sbjct: 146 EDLTARERDILALLAKGYDNQTIADELFISLKTVKTHVSNILSKLQVDDRTQAVVYAFQ 204 >gi|209964708|ref|YP_002297623.1| nitrate/nitrite response regulator protein narP,putative [Rhodospirillum centenum SW] gi|209958174|gb|ACI98810.1| nitrate/nitrite response regulator protein narP,putative [Rhodospirillum centenum SW] Length = 220 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 27/51 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTE E CLQL G G + IAE L LS + + + S KL NR +A Sbjct: 141 LTEVEFRCLQLLGQGLNNRTIAEGLNLSEAVIKSMVRSVLAKLHFRNRTEA 191 >gi|116330476|ref|YP_800194.1| receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116124165|gb|ABJ75436.1| Receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 233 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 10/116 (8%) Query: 129 NGYVIF-TSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARN---LTERE 178 +GY++ T L LA +I GA ++I +F + + ++ +N LT+R+ Sbjct: 111 SGYLLKDTPPELFLAELKVIILGGASLTPRIADKIIREFTKKEENQNPPIQNTLGLTKRQ 170 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T +IA++L +S HTV+ ++ K++ ++ +AI + R G I Sbjct: 171 LQILNFVALGMTVADIADELDISSHTVSRHIEKIYKKMEVHSKSEAIIRGRRMGII 226 >gi|27367915|ref|NP_763442.1| transcriptional regulator VpsT [Vibrio vulnificus CMCP6] gi|27359488|gb|AAO08432.1| Transcriptional regulator VpsT [Vibrio vulnificus CMCP6] Length = 221 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 35/60 (58%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + + LT+RE + L G ++++IA KL + +TV +L + K+D NR+QA+ A Sbjct: 151 NVSTKLTKREQQIITLLSLGNSNQQIARKLFVRENTVKTHLHNIFKKIDVKNRVQALIWA 210 >gi|21223170|ref|NP_628949.1| two-component system DNA-binding response regulator [Streptomyces coelicolor A3(2)] gi|8218193|emb|CAB92655.1| putative two-component system DNA-binding response regulator [Streptomyces coelicolor A3(2)] Length = 251 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 190 RLTQREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNR 238 >gi|311896797|dbj|BAJ29205.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 229 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G ++ EIA +L LS TV ++G KL +R+QA+ A G Sbjct: 163 LTDREREVFLLVSQGLSNGEIAARLVLSEATVKTHVGRILAKLGLRDRVQAVVLAYENGL 222 Query: 234 I 234 + Sbjct: 223 V 223 >gi|284009120|emb|CBA76124.1| LuxR family transcriptional regulatory protein [Arsenophonus nasoniae] Length = 243 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 11/133 (8%) Query: 112 LLPFAGIAFPVR--------LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 +L +G AF + L + + ++I EF + +N+ E G L L Sbjct: 103 MLNISGYAFVLHDHLNNLALLSLYMDKFLIKDIEFFIKSNKG--ELQGLLIHTHEMLLSL 160 Query: 164 FKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++ ++ + + + RE+ L G T EI L +S +TV ++G+ KL +N Sbjct: 161 YQNENTTEKIIFSPRESEVLYWCSIGKTYSEIGTILNISTYTVKFHIGNVVKKLGVINAK 220 Query: 223 QAIAKAIRFGYIC 235 AI+ +++ I Sbjct: 221 HAISLSVKLNLIS 233 >gi|269929119|ref|YP_003321440.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269788476|gb|ACZ40618.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 209 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 29/54 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + A LT RE LQL G ++ IA +LG+S HTV ++GS KL A Sbjct: 138 RASPDAGEPLTPREREILQLIAQGLPNKSIALELGISEHTVKFHVGSILDKLGA 191 >gi|225028039|ref|ZP_03717231.1| hypothetical protein EUBHAL_02308 [Eubacterium hallii DSM 3353] gi|224954639|gb|EEG35848.1| hypothetical protein EUBHAL_02308 [Eubacterium hallii DSM 3353] Length = 223 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+ E +Q G G +++EIA +L LS TV YL S KL+ +R Q A++ G Sbjct: 157 LTKTEWRVIQKIGCGMSNKEIASELALSEGTVRNYLSSVLSKLELRDRTQLAIWAVQTGA 216 Query: 234 I 234 + Sbjct: 217 V 217 >gi|218291120|ref|ZP_03495135.1| transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|258511821|ref|YP_003185255.1| transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218238931|gb|EED06139.1| transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|257478547|gb|ACV58866.1| transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 75 Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +L T++EIA +L +S TV ++ + KL+ R QA+ + +R G Sbjct: 13 LTNREREVFELLVQDKTTKEIASQLFVSEKTVRNHISNVMKKLNVKGRSQAVVELVRLGE 72 Query: 234 I 234 I Sbjct: 73 I 73 >gi|116328918|ref|YP_798638.1| receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121662|gb|ABJ79705.1| Receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 233 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 10/116 (8%) Query: 129 NGYVIF-TSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARN---LTERE 178 +GY++ T L LA +I GA ++I +F + + ++ +N LT+R+ Sbjct: 111 SGYLLKDTPPELFLAELKVIILGGASLTPRIADKIIREFTKKEENQNPPIQNTLGLTKRQ 170 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T +IA++L +S HTV+ ++ K++ ++ +AI + R G I Sbjct: 171 LQILNFVALGMTVADIADELDISSHTVSRHIEKIYKKMEVHSKSEAIIRGRRMGII 226 >gi|9297035|sp|O54452|RAIR_RHIET RecName: Full=Transcriptional activator protein raiR gi|2897879|gb|AAC38173.1| RaiR [Rhizobium etli] Length = 242 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 26/44 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L+ RE CL++ +G +++I +L +SV V YL SA KL Sbjct: 183 RLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKL 226 >gi|116511719|ref|YP_808935.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|125624447|ref|YP_001032930.1| two-component system regulator llrD [Lactococcus lactis subsp. cremoris MG1363] gi|12483697|gb|AAG53723.1|AF172650_3 RrD [Lactococcus lactis subsp. cremoris MG1363] gi|116107373|gb|ABJ72513.1| DNA-binding response regulator (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] gi|124493255|emb|CAL98222.1| two-component system regulator llrD [Lactococcus lactis subsp. cremoris MG1363] gi|300071234|gb|ADJ60634.1| two-component system regulator llrD [Lactococcus lactis subsp. cremoris NZ9000] Length = 209 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 61/116 (52%), Gaps = 8/116 (6%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-----ELFKKRSSAARNL 174 FP L GY++ TS+ +A + A+G V++D + + ++ +L Sbjct: 93 FPA-LAAGAKGYILKTSQAAEIAMAIRKVANGE--DVLSDAVKEKIAQQKHRKHELYDDL 149 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++RE L++ G +++EIA++L +S+ TV ++ + KL+ +R QA AI+ Sbjct: 150 SKRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQ 205 >gi|228900854|ref|ZP_04065069.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228965235|ref|ZP_04126329.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228794469|gb|EEM41981.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228858780|gb|EEN03225.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 209 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 147 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205 >gi|257789986|ref|YP_003180592.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|317489430|ref|ZP_07947941.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325830178|ref|ZP_08163635.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] gi|257473883|gb|ACV54203.1| transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|316911483|gb|EFV33081.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325487645|gb|EGC90083.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] Length = 487 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL------GSATVKLDAVNRI 222 +AA LT RET L L G T IA++LGLS +T+ Y+ SA K D ++R+ Sbjct: 417 AAAHALTARETDVLILLCQGRTRTYIADELGLSPNTIKGYIHNVYQKSSAVDKQDLLDRV 476 Query: 223 Q 223 + Sbjct: 477 E 477 >gi|111022376|ref|YP_705348.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110821906|gb|ABG97190.1| possible transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 890 Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 30/59 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S A L+ RE Q DG T++EIA++L LSV TV ++ KL R Q A Sbjct: 822 SYPAVGLSPREWDIAQCVADGLTNKEIADRLVLSVRTVEGHVAHVLRKLGVPRRHQVAA 880 >gi|16264198|ref|NP_436990.1| putative sensory transduction DNA-binding response regulator protein [Sinorhizobium meliloti 1021] gi|15140323|emb|CAC48850.1| putative sensory transduction DNA-binding response regulator protein [Sinorhizobium meliloti 1021] Length = 214 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA- 224 +R S + LT RE LA G S EIA +LG++ TV +L S KL+ R++ Sbjct: 144 ERRSVMQKLTPRELEISCLAAAGLRSREIAARLGIAPGTVKLHLHSVYSKLNIATRVELA 203 Query: 225 -IAKAIRF 231 I++ +RF Sbjct: 204 NISQRLRF 211 >gi|158316449|ref|YP_001508957.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111854|gb|ABW14051.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 223 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE ++L G T++EIAE+L LS TV + A K+ A +R Q + A + G Sbjct: 157 LTKRENEIVRLIAYGLTNDEIAEQLYLSPLTVKTHANRAMTKVAARDRAQLVVIAYQTG 215 >gi|282860900|ref|ZP_06269966.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564636|gb|EFB70172.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 231 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 170 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 218 >gi|262273889|ref|ZP_06051702.1| DNA-binding HTH domain-containing protein [Grimontia hollisae CIP 101886] gi|262222304|gb|EEY73616.1| DNA-binding HTH domain-containing protein [Grimontia hollisae CIP 101886] Length = 224 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L+ G ++ EIA+ L +S HTV ++L + K++ NR+QA+ Sbjct: 157 LTNREQQILRKLVTGASNSEIADSLFVSEHTVKSHLYNIFKKINVKNRVQAV 208 >gi|258650899|ref|YP_003200055.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554124|gb|ACV77066.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 241 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G ++ EIA L +S TV +++G+ KLD NR+ A+ A G Sbjct: 163 SLTGREHEVLLLLARGRSNAEIATDLVVSEVTVKSHVGAVLHKLDLRNRVAAVIYAYEHG 222 Query: 233 YI 234 I Sbjct: 223 LI 224 >gi|254443862|ref|ZP_05057338.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198258170|gb|EDY82478.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 220 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 10/136 (7%) Query: 109 EGGLLPFAGIAFPVRLG----FHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITD 159 E +L + + P R+G G++ EF + + A+G A Q +D Sbjct: 85 EAKILIISSVEDPKRIGSLLQMGVTGFLNKKEEFSVFEQAIEAVANGNIFVKASAQTQSD 144 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 ++ ++ L++RE + G T++EIA+ LGLS+ TV ++ + + KL Sbjct: 145 SPDVLDQKE-LLETLSDREKQIVVFVASGMTNKEIAQNLGLSIKTVESHRSNISKKLKIF 203 Query: 220 NRIQAIAKAIRFGYIC 235 + A+R G + Sbjct: 204 DIAGVTLFAVRTGLVT 219 >gi|84622783|ref|YP_450155.1| putative transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84366723|dbj|BAE67881.1| putative transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 552 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 34/54 (62%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +ERE L GY++++IA +L LS +TV +L + KLDA +R A+A+A Sbjct: 477 SERELEVLAQLARGYSNKQIARRLHLSENTVKFHLKNLYRKLDARSRESALAQA 530 >gi|296104727|ref|YP_003614873.1| hypothetical protein ECL_04395 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059186|gb|ADF63924.1| hypothetical protein ECL_04395 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 235 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LF+ + L+ RE L+L G +EIA+ + LS+ TV+A+ A KLD N Sbjct: 160 LFRHEKTDVEKLSPREIDVLRLICKGLNLKEIAQFMHLSIKTVSAHKVRAMEKLDVQNDC 219 Query: 223 Q 223 Q Sbjct: 220 Q 220 >gi|238025036|ref|YP_002909268.1| FOG PAS/PAC domain-containing protein [Burkholderia glumae BGR1] gi|237879701|gb|ACR32033.1| FOG: PAS/PAC domain protein [Burkholderia glumae BGR1] Length = 529 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA +LGL+ +TV ++ + KLD +R +AI A G Sbjct: 438 DLTARERDVFDLLCHGLPDKEIANRLGLAPNTVRNHVATIYTKLDVHSRGEAIVWARERG 497 Query: 233 YI 234 + Sbjct: 498 IV 499 >gi|117617851|ref|YP_857301.1| DNA-binding transcriptional activator UhpA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559258|gb|ABK36206.1| transcriptional regulatory protein UhpA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 196 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 AHG CY + D K ++ LT RE QL G + IAE+LGLS TV+ + Sbjct: 116 AHGGCY-LTPDIAH--KLACNSQDPLTNREREVAQLLARGLEVKAIAEQLGLSPKTVHVH 172 Query: 209 LGSATVKLDAVNRIQ 223 + KL N ++ Sbjct: 173 RANLMDKLKVSNNVE 187 >gi|329296830|ref|ZP_08254166.1| hypothetical protein Pstas_10180 [Plautia stali symbiont] Length = 229 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 6/54 (11%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L +R+ L + GY +E+I +LG+S TVNA+ KL+A+ R+Q +K Sbjct: 140 LPDRQLRVLLMMAWGYNTEQIGNRLGISHKTVNAH------KLNALTRLQVKSK 187 >gi|256396070|ref|YP_003117634.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362296|gb|ACU75793.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +T+RE L L G G ++ EIAE+L +S T ++ KL+A +R+ Sbjct: 160 QITDREREVLALVGQGLSNAEIAERLIISAATAKTHVARLFAKLEARDRVH 210 >gi|296141182|ref|YP_003648425.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029316|gb|ADG80086.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 213 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LT RE L L G G ++ EIA +L L+V TV +++ + K D+ R+Q Sbjct: 155 SLTAREREVLALIGQGLSNAEIAAELHLAVTTVKSHVTNLLAKTDSSTRLQ 205 >gi|227508387|ref|ZP_03938436.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192037|gb|EEI72104.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 219 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R+L++RE L GYT++EIA +L +S TV A+ S KL +R + + A+ Sbjct: 155 RSLSKREREVFPLMALGYTNKEIANRLFISTKTVEAHKASIMHKLSLNSRPELVRYAVHH 214 Query: 232 GYI 234 I Sbjct: 215 HLI 217 >gi|226973349|gb|ACO94482.1| LuxR-type transcriptional regulator [Streptomyces sp. MP39-85] Length = 951 Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 30/60 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+E E LA GY + EIAE+L ++V TV +L K+ NR Q + A Y Sbjct: 889 LSESERRVAMLAAQGYANREIAERLFITVSTVEQHLTRVYRKMGIRNREQLLQGAHAVSY 948 >gi|196231242|ref|ZP_03130101.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196224578|gb|EDY19089.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 242 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 28/49 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +S L++RE L+L G G+ S EIAE+L LSV TV + KL Sbjct: 167 ASPVDKLSDREFEVLRLLGRGFGSREIAEELSLSVKTVETHRAHIKEKL 215 >gi|302337621|ref|YP_003802827.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634806|gb|ADK80233.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 214 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 34/56 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE L+ +G ++EIA++L +S TV +++ KL+ NR+QA+ A Sbjct: 151 SLTTREKDVLRCMLEGKENKEIADELFISCETVKSHIKHIFRKLEVTNRVQAVQVA 206 >gi|294791147|ref|ZP_06756304.1| putative DNA-binding response regulator [Scardovia inopinata F0304] gi|294457618|gb|EFG25972.1| putative DNA-binding response regulator [Scardovia inopinata F0304] Length = 209 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE+ + G +++EIA+K +S++TV + KL A NR QA+ Sbjct: 110 LTARESQIMDAYCHGLSTQEIADKFAISINTVKTLAKRSFSKLGAHNRAQAV 161 >gi|182414741|ref|YP_001819807.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177841955|gb|ACB76207.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 223 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G +++EIA L +S TV ++L + KL +R A +AIR G Sbjct: 159 QLTERERDVLESLIKGRSNKEIASSLCISEDTVKSHLKTLFAKLRVRDRTGAAIEAIRHG 218 Query: 233 YI 234 + Sbjct: 219 IV 220 >gi|119718565|ref|YP_925530.1| helix-turn-helix, type 11 domain-containing protein [Nocardioides sp. JS614] gi|119539226|gb|ABL83843.1| Helix-turn-helix, type 11 domain protein [Nocardioides sp. JS614] Length = 330 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 6/81 (7%) Query: 160 FLELFKKRSSAARNLTERETSC------LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 E+ +R+S L + E LQ G E IA KLGLS+ TV + Sbjct: 250 LFEMLWERASTVPELEQGEPRSDLRRFLLQQLATGAQDELIARKLGLSLRTVRRRVAGLM 309 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 +L A +R QA +A+R G++ Sbjct: 310 SELGADSRFQAGVEAVRRGWL 330 >gi|285808415|gb|ADC35942.1| two component transcriptional regulator LuxR family [uncultured bacterium 70] Length = 210 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 19/35 (54%), Positives = 25/35 (71%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 LT RE LQL G +++EIAE+LGLSV+TV + Sbjct: 147 LTPRELEVLQLICSGMSNKEIAEELGLSVNTVAVH 181 >gi|288921805|ref|ZP_06416022.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288346829|gb|EFC81141.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 694 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L A DG T +IA +L LS TV YL + K NR++A+ A G+ Sbjct: 634 LTGRERDVLVAARDGATVADIARRLFLSEGTVRNYLSAVIAKTGTRNRMEALRVAEDSGW 693 Query: 234 I 234 + Sbjct: 694 L 694 >gi|311744130|ref|ZP_07717936.1| two component system response regulator [Aeromicrobium marinum DSM 15272] gi|311313260|gb|EFQ83171.1| two component system response regulator [Aeromicrobium marinum DSM 15272] Length = 217 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 4/60 (6%) Query: 168 SSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S+AAR LTERE G G ++ EIA L +S+ T A++ KLD NR+Q Sbjct: 147 STAARARIDLLTEREIEVAVAIGRGRSNAEIAADLHMSLATAKAHISHIFSKLDVTNRVQ 206 >gi|284991308|ref|YP_003409862.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Geodermatophilus obscurus DSM 43160] gi|284064553|gb|ADB75491.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 766 Score = 37.7 bits (86), Expect = 1.3, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 7/79 (8%) Query: 161 LELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +EL R +A R LTERE S L+ + E+ L LS++TV +Y S Sbjct: 686 VELRAGRRAATRVRPALLEPLTEREVSVLRALRGPLSQREVGAALHLSINTVKSYTRSLY 745 Query: 214 VKLDAVNRIQAIAKAIRFG 232 KLD +R +A+ + G Sbjct: 746 RKLDVGSRREAVERGRALG 764 >gi|220914644|ref|YP_002489953.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219861522|gb|ACL41864.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 230 Score = 37.7 bits (86), Expect = 1.3, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RET L+ +G ++ EIA + LS TV ++ KL +R+QA+ A G Sbjct: 162 DLTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETG 221 Query: 233 YIC 235 + Sbjct: 222 LVV 224 >gi|329947847|ref|ZP_08294779.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523471|gb|EGF50569.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 215 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 1/79 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A + + D + A LTERE L G + EIA++LG+ TV ++ Sbjct: 130 AAVLEQLVDATAMRAPSRQAPGTLTEREREVAVLVAQGLANSEIADRLGIGAATVKTHVS 189 Query: 211 SATVKLDAVNRIQ-AIAKA 228 + K NR+Q A+A A Sbjct: 190 TLLEKFKVRNRVQLAVAVA 208 >gi|319785654|ref|YP_004145129.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317464166|gb|ADV25898.1| two component transcriptional regulator, LuxR family [Pseudoxanthomonas suwonensis 11-1] Length = 214 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + L+L GY+++EIA L L+ TV Y+ + KL +R +A+ KAI I Sbjct: 157 REVAILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 214 >gi|307331595|ref|ZP_07610705.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306882768|gb|EFN13844.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 926 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S L+E E LA DGYT+ EIA L +++ TV +L KL+ +R Q + A Sbjct: 859 SLGTKLSESEARVAALAVDGYTNREIAASLFITISTVEQHLTRVYRKLNIRSR-QQLPTA 917 Query: 229 IR 230 +R Sbjct: 918 LR 919 >gi|326774525|ref|ZP_08233790.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326654858|gb|EGE39704.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 225 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 33/70 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R A LT RE L DG ++ EI +L ++ TV +L KLD +R A Sbjct: 145 RMRRPAPVTLTPREVDVLGAVADGLSNVEIGRRLVIAEATVKTHLLRVFAKLDVADRTHA 204 Query: 225 IAKAIRFGYI 234 + +A+ + Sbjct: 205 VVRALELNLL 214 >gi|229491865|ref|ZP_04385686.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] gi|229321546|gb|EEN87346.1| putative transcriptional regulator [Rhodococcus erythropolis SK121] Length = 876 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT E + L+ G T+E IA+ L LSV+T+ +L KL+ NR A+ A R G Sbjct: 816 LTPGEYTVLRELASGDTTESIADTLFLSVNTIKTHLRGIYRKLEVSNRRDALKAARRGGL 875 Query: 234 I 234 I Sbjct: 876 I 876 >gi|256391285|ref|YP_003112849.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256357511|gb|ACU71008.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 959 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 21/48 (43%), Positives = 27/48 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+ERE LA G S EIA++L LS TV A+LG +L +R Sbjct: 892 LSEREREIAALAAAGLRSREIAQRLFLSPRTVEAHLGRVYRRLGVSSR 939 >gi|227112572|ref|ZP_03826228.1| virulence regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 204 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +S L+ER+ LQL G ++++I+ L +S TV ++L S +L+ NR QA Sbjct: 138 NSVKGKLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQA 194 >gi|226309128|ref|YP_002769088.1| LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226188245|dbj|BAH36349.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 857 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT E + L+ G T+E IA+ L LSV+T+ +L KL+ NR A+ A R G Sbjct: 797 LTPGEYTVLRELASGDTTESIADTLFLSVNTIKTHLRGIYRKLEVSNRRDALKAARRGGL 856 Query: 234 I 234 I Sbjct: 857 I 857 >gi|254392026|ref|ZP_05007217.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294814548|ref|ZP_06773191.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326442938|ref|ZP_08217672.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197705704|gb|EDY51516.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327147|gb|EFG08790.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 233 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 172 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 220 >gi|297583730|ref|YP_003699510.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142187|gb|ADH98944.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 212 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + KK + LT RE L+L G +++EI + L +S+ TV ++ + KL +R Sbjct: 137 MHKKPPAEHEQLTARELEVLELMSRGMSNQEIGDALYISLKTVKVHVSNILSKLGVHDRT 196 Query: 223 QAIAKAIR 230 QA+ A + Sbjct: 197 QAVIYAFK 204 >gi|148241325|ref|YP_001226482.1| transcriptional regulator [Synechococcus sp. RCC307] gi|147849635|emb|CAK27129.1| ranscriptional regulator, luxR family [Synechococcus sp. RCC307] Length = 92 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE ++L T++EIA +L +S TV+ ++ + K + NR+ + A+ G Sbjct: 18 LSERELEIIELVAAELTNQEIALRLSISKRTVDNHVSNIFTKTGSRNRVALVNWALSNGK 77 Query: 234 IC 235 IC Sbjct: 78 IC 79 >gi|158318331|ref|YP_001510839.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113736|gb|ABW15933.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 249 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L+L G ++ + A +LG+S TV ++ + KL NR++ A+R Sbjct: 183 APRLTAREVEVLRLVAKGLSARDAARQLGVSHRTVQNHVHNVLGKLQLRNRVELTRFAVR 242 Query: 231 FGY 233 GY Sbjct: 243 EGY 245 >gi|302539479|ref|ZP_07291821.1| predicted protein [Streptomyces sp. C] gi|302448374|gb|EFL20190.1| predicted protein [Streptomyces sp. C] Length = 92 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 29/50 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ERE L G+G T+++IA +L +SV TV Y+ KL +R Q Sbjct: 31 LSERERVVTGLVGEGRTNQQIAARLDISVKTVETYMSRIFKKLGMNSRTQ 80 >gi|297160587|gb|ADI10299.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 237 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 30/61 (49%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++RE L L G + EIAE LGLS T ++ KLDA +R Q + A G + Sbjct: 170 SDRERQVLTLVARGLNNAEIAEALGLSPLTAKTHVSRIMGKLDARDRAQLVIAAYECGLV 229 Query: 235 C 235 Sbjct: 230 T 230 >gi|228996994|ref|ZP_04156626.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] gi|228762735|gb|EEM11650.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] Length = 191 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L G T+ EIAE L +S TV ++ + KL ++R +A A G+ Sbjct: 123 LSERELEVLRLIARGLTNAEIAESLFISEKTVKGHVSNILSKLHMLDRTKAAVFAWEQGF 182 Query: 234 I 234 + Sbjct: 183 M 183 >gi|227327824|ref|ZP_03831848.1| virulence regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|290454909|emb|CBJ57167.1| homologue of Erwinia virulence regulator [Pectobacterium carotovorum] Length = 204 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +S L+ER+ LQL G ++++I+ L +S TV ++L S +L+ NR QA Sbjct: 138 NSVKGKLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQA 194 >gi|212691634|ref|ZP_03299762.1| hypothetical protein BACDOR_01129 [Bacteroides dorei DSM 17855] gi|212665823|gb|EEB26395.1| hypothetical protein BACDOR_01129 [Bacteroides dorei DSM 17855] Length = 256 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 34/53 (64%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +LT RE L+L G+ S+EIA+KL +S++TV+ + + KL N ++AI Sbjct: 194 SLTGREMEILRLIQRGFLSKEIADKLCISIYTVHIHRQNLLRKLGVHNSLEAI 246 >gi|145298529|ref|YP_001141370.1| DNA-binding transcriptional activator UhpA [Aeromonas salmonicida subsp. salmonicida A449] gi|142851301|gb|ABO89622.1| two-component system response regulator UhpA [Aeromonas salmonicida subsp. salmonicida A449] Length = 196 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 AHG CY + D K ++ LT RE QL G + IAE+LGLS TV+ + Sbjct: 116 AHGGCY-LTPDIAH--KLACNSQDPLTNREREVAQLLARGLEVKAIAEQLGLSPKTVHVH 172 Query: 209 LGSATVKLDAVNRIQ 223 + KL N ++ Sbjct: 173 RANLMDKLKVSNNVE 187 >gi|20809083|ref|NP_624254.1| regulatory proteins [Thermoanaerobacter tengcongensis MB4] gi|20517759|gb|AAM25858.1| Bacterial regulatory proteins [Thermoanaerobacter tengcongensis MB4] Length = 108 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 2/96 (2%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +A+EV + ++ T++ ++ K++ + L + + L L GY +IAE L Sbjct: 10 IADEVSMVIKLLAEKIATEYEKIVKEKELNEIKIKLNDSQIKMLALEAKGYRELDIAEAL 69 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+ V TV + KL N +A+ KAIR G I Sbjct: 70 GIGVVTVKYHKRKIVEKLGVKNIKEAVIKAIRLGLI 105 >gi|17987890|ref|NP_540524.1| glycerol metabolism activator [Brucella melitensis bv. 1 str. 16M] gi|23501222|ref|NP_697349.1| LuxR family DNA-binding response regulator [Brucella suis 1330] gi|62289309|ref|YP_221102.1| LuxR family DNA-binding response regulator [Brucella abortus bv. 1 str. 9-941] gi|82699239|ref|YP_413813.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus 2308] gi|161618298|ref|YP_001592185.1| two component LuxR family transcriptional regulator [Brucella canis ATCC 23365] gi|163842602|ref|YP_001627006.1| two component LuxR family transcriptional regulator [Brucella suis ATCC 23445] gi|189023562|ref|YP_001934330.1| LuxR family transcriptional regulator [Brucella abortus S19] gi|225626842|ref|ZP_03784881.1| glycerol metabolism activator [Brucella ceti str. Cudo] gi|225851861|ref|YP_002732094.1| LuxR family two component transcriptional regulator [Brucella melitensis ATCC 23457] gi|237814800|ref|ZP_04593798.1| glycerol metabolism activator [Brucella abortus str. 2308 A] gi|254688629|ref|ZP_05151883.1| two component transcriptional regulator, LuxR family protein [Brucella abortus bv. 6 str. 870] gi|254696752|ref|ZP_05158580.1| two component transcriptional regulator, LuxR family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254701135|ref|ZP_05162963.1| two component transcriptional regulator, LuxR family protein [Brucella suis bv. 5 str. 513] gi|254707944|ref|ZP_05169772.1| two component transcriptional regulator, LuxR family protein [Brucella pinnipedialis M163/99/10] gi|254709478|ref|ZP_05171289.1| two component transcriptional regulator, LuxR family protein [Brucella pinnipedialis B2/94] gi|254718509|ref|ZP_05180320.1| two component transcriptional regulator, LuxR family protein [Brucella sp. 83/13] gi|254729661|ref|ZP_05188239.1| two component transcriptional regulator, LuxR family protein [Brucella abortus bv. 4 str. 292] gi|256030972|ref|ZP_05444586.1| two component transcriptional regulator, LuxR family protein [Brucella pinnipedialis M292/94/1] gi|256044043|ref|ZP_05446954.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060463|ref|ZP_05450634.1| two component transcriptional regulator, LuxR family protein [Brucella neotomae 5K33] gi|256112839|ref|ZP_05453760.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis bv. 3 str. Ether] gi|256159018|ref|ZP_05456855.1| two component transcriptional regulator, LuxR family protein [Brucella ceti M490/95/1] gi|256254376|ref|ZP_05459912.1| two component transcriptional regulator, LuxR family protein [Brucella ceti B1/94] gi|256256876|ref|ZP_05462412.1| two component transcriptional regulator, LuxR family protein [Brucella abortus bv. 9 str. C68] gi|256264624|ref|ZP_05467156.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|256368775|ref|YP_003106281.1| DNA-binding response regulator, LuxR family [Brucella microti CCM 4915] gi|260168107|ref|ZP_05754918.1| DNA-binding response regulator, LuxR family protein [Brucella sp. F5/99] gi|260545936|ref|ZP_05821677.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260563402|ref|ZP_05833888.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260567065|ref|ZP_05837535.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260754100|ref|ZP_05866448.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260757320|ref|ZP_05869668.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260761144|ref|ZP_05873487.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260883126|ref|ZP_05894740.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|261221537|ref|ZP_05935818.1| two component transcriptional regulator [Brucella ceti B1/94] gi|261315435|ref|ZP_05954632.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261317000|ref|ZP_05956197.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261324454|ref|ZP_05963651.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261751668|ref|ZP_05995377.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|261757557|ref|ZP_06001266.1| bacterial regulatory protein [Brucella sp. F5/99] gi|265983478|ref|ZP_06096213.1| two component transcriptional regulator [Brucella sp. 83/13] gi|265988037|ref|ZP_06100594.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|265990454|ref|ZP_06103011.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|265994282|ref|ZP_06106839.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|265997500|ref|ZP_06110057.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|294851704|ref|ZP_06792377.1| two component LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|297247726|ref|ZP_06931444.1| two component LuxR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|306838316|ref|ZP_07471162.1| two component LuxR family transcriptional regulator [Brucella sp. NF 2653] gi|306842417|ref|ZP_07475069.1| two component LuxR family transcriptional regulator [Brucella sp. BO2] gi|306844955|ref|ZP_07477536.1| two component LuxR family transcriptional regulator [Brucella sp. BO1] gi|17983624|gb|AAL52788.1| glycerol metabolism activator [Brucella melitensis bv. 1 str. 16M] gi|23347103|gb|AAN29264.1| DNA-binding response regulator, LuxR family [Brucella suis 1330] gi|62195441|gb|AAX73741.1| DNA-binding response regulator, LuxR family [Brucella abortus bv. 1 str. 9-941] gi|82615340|emb|CAJ10301.1| Bacterial regulatory protein, LuxR family:Response regulator receiver [Brucella melitensis biovar Abortus 2308] gi|161335109|gb|ABX61414.1| two component transcriptional regulator, LuxR family [Brucella canis ATCC 23365] gi|163673325|gb|ABY37436.1| two component transcriptional regulator, LuxR family [Brucella suis ATCC 23445] gi|189019134|gb|ACD71856.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|225618499|gb|EEH15542.1| glycerol metabolism activator [Brucella ceti str. Cudo] gi|225640226|gb|ACO00140.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis ATCC 23457] gi|237789637|gb|EEP63847.1| glycerol metabolism activator [Brucella abortus str. 2308 A] gi|255998933|gb|ACU47332.1| DNA-binding response regulator, LuxR family [Brucella microti CCM 4915] gi|260097343|gb|EEW81218.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260153418|gb|EEW88510.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260156583|gb|EEW91663.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260667638|gb|EEX54578.1| two component transcriptional regulator [Brucella abortus bv. 4 str. 292] gi|260671576|gb|EEX58397.1| two component transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59] gi|260674208|gb|EEX61029.1| two component transcriptional regulator [Brucella abortus bv. 6 str. 870] gi|260872654|gb|EEX79723.1| two component transcriptional regulator [Brucella abortus bv. 9 str. C68] gi|260920121|gb|EEX86774.1| two component transcriptional regulator [Brucella ceti B1/94] gi|261296223|gb|EEX99719.1| two component transcriptional regulator [Brucella pinnipedialis B2/94] gi|261300434|gb|EEY03931.1| two component transcriptional regulator [Brucella neotomae 5K33] gi|261304461|gb|EEY07958.1| two component transcriptional regulator [Brucella pinnipedialis M163/99/10] gi|261737541|gb|EEY25537.1| bacterial regulatory protein [Brucella sp. F5/99] gi|261741421|gb|EEY29347.1| two component transcriptional regulator [Brucella suis bv. 5 str. 513] gi|262551968|gb|EEZ07958.1| two component transcriptional regulator [Brucella ceti M490/95/1] gi|262765395|gb|EEZ11184.1| two component transcriptional regulator [Brucella melitensis bv. 3 str. Ether] gi|263001238|gb|EEZ13813.1| two component transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1] gi|263094991|gb|EEZ18699.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|264660234|gb|EEZ30495.1| two component transcriptional regulator [Brucella pinnipedialis M292/94/1] gi|264662070|gb|EEZ32331.1| two component transcriptional regulator [Brucella sp. 83/13] gi|294820293|gb|EFG37292.1| two component LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|297174895|gb|EFH34242.1| two component LuxR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|306274587|gb|EFM56376.1| two component LuxR family transcriptional regulator [Brucella sp. BO1] gi|306287439|gb|EFM58916.1| two component LuxR family transcriptional regulator [Brucella sp. BO2] gi|306406607|gb|EFM62840.1| two component LuxR family transcriptional regulator [Brucella sp. NF 2653] gi|326408357|gb|ADZ65422.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28] gi|326538072|gb|ADZ86287.1| two component transcriptional regulator, LuxR family protein [Brucella melitensis M5-90] Length = 213 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT ++T L + +G +++IA +LG+S TV A++ + KL +R QA+ R Sbjct: 147 RTLTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRI 206 Query: 232 G 232 G Sbjct: 207 G 207 >gi|307823586|ref|ZP_07653815.1| two component transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] gi|307735571|gb|EFO06419.1| two component transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] Length = 297 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Query: 155 QVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 Q+I +L++ K ++ NLT RE L+L GY ++EIA+ L +S+ TV + + Sbjct: 132 QIINGYLKVEKSCLDNNLNWNLTSREAQLLKLIAAGYKNKEIADSLCISLKTVETHRATL 191 Query: 213 TVKLDAVN 220 K +A N Sbjct: 192 MRKFNAHN 199 >gi|300785517|ref|YP_003765808.1| LuxR family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] gi|299795031|gb|ADJ45406.1| LuxR family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] Length = 397 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +R LT+RE +L GDG T+ EIA L ++ TV +L + KL+ NR+ Sbjct: 329 PRRPGLLTRLTDREQQVARLVGDGMTNREIAAALYVTEKTVEMHLSNVFGKLEVRNRV 386 >gi|302558898|ref|ZP_07311240.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302476516|gb|EFL39609.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 237 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 176 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 224 >gi|254693110|ref|ZP_05154938.1| two component transcriptional regulator, LuxR family protein [Brucella abortus bv. 3 str. Tulya] gi|261213346|ref|ZP_05927627.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] gi|260914953|gb|EEX81814.1| two component transcriptional regulator [Brucella abortus bv. 3 str. Tulya] Length = 213 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT ++T L + +G +++IA +LG+S TV A++ + KL +R QA+ R Sbjct: 147 RTLTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRI 206 Query: 232 G 232 G Sbjct: 207 G 207 >gi|242372051|ref|ZP_04817625.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] gi|242350163|gb|EES41764.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1] Length = 218 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY ++EIAEKL +SV TV A+ KL+ ++ + + Sbjct: 150 SDPFKVLSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMNKLNLKSKPELVEY 209 Query: 228 AIR 230 A++ Sbjct: 210 ALK 212 >gi|300772169|ref|ZP_07082039.1| LuxR family response regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300760472|gb|EFK57298.1| LuxR family response regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 216 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LT RE L+L G +TS++IAEKL +S+ TV+ + + KL Sbjct: 156 LTSRELEILRLIGQNFTSQQIAEKLFISMFTVDTHRKNMIYKL 198 >gi|229004659|ref|ZP_04162396.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228756547|gb|EEM05855.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] Length = 191 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L G T+ EIAE L +S TV ++ + KL ++R +A A G+ Sbjct: 123 LSERELEVLRLIARGLTNAEIAESLFISEKTVKGHVSNILSKLHMLDRTKAAVFAWEQGF 182 Query: 234 I 234 + Sbjct: 183 M 183 >gi|154487087|ref|ZP_02028494.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis L2-32] gi|154084950|gb|EDN83995.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis L2-32] Length = 249 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ Sbjct: 189 LTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAV 240 >gi|116694767|ref|YP_728978.1| LuxR family transcriptional regulator [Ralstonia eutropha H16] gi|113529266|emb|CAJ95613.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16] Length = 901 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 31/53 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE L++ GY + IA+KL LS TV ++L KL A +R +A+A Sbjct: 840 LTGRELEVLRMLSAGYRNRVIAQKLFLSELTVKSHLRRIHAKLGAQSRTEAVA 892 >gi|83954970|ref|ZP_00963648.1| transcriptional regulator [Sulfitobacter sp. NAS-14.1] gi|83840696|gb|EAP79868.1| transcriptional regulator [Sulfitobacter sp. NAS-14.1] Length = 249 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RE CL G EI L +S T ++ A KL A R A+AK++ G Sbjct: 186 NLTPRERDCLSYLAIGLRPAEICWTLKISEKTFEKHIKGAKEKLRASTRDHAVAKSLVLG 245 Query: 233 YI 234 I Sbjct: 246 LI 247 >gi|315648900|ref|ZP_07901994.1| TPR repeat-containing transcriptional regulator LuxR [Paenibacillus vortex V453] gi|315275581|gb|EFU38935.1| TPR repeat-containing transcriptional regulator LuxR [Paenibacillus vortex V453] Length = 875 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 30/58 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE Q D + EIAEKL ++ TV + KL+A N +AIA+A R Sbjct: 809 LTSREMDVFQGLLDHLSGREIAEKLNVTYETVKTHRKRIYSKLNAANLSEAIAQAERL 866 >gi|300788090|ref|YP_003768381.1| LuxR family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] gi|299797604|gb|ADJ47979.1| LuxR family transcriptional regulator fused with ATPase domain [Amycolatopsis mediterranei U32] Length = 771 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 28/55 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S L+ RE +L DG T+++IA LGLS TV YL KL +R Q Sbjct: 688 SELAQLSGREREISRLVSDGRTNQQIARTLGLSHKTVETYLARIFKKLALCSRAQ 742 >gi|294791176|ref|ZP_06756333.1| two-component system response regulator [Scardovia inopinata F0304] gi|294457647|gb|EFG26001.1| two-component system response regulator [Scardovia inopinata F0304] Length = 258 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 27/48 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE +QL GYT +E+A +L +SV TV ++ KL NR Sbjct: 198 LTSREREVMQLIARGYTYKEVASELFISVKTVETHVSRVLRKLQLSNR 245 >gi|228958531|ref|ZP_04120251.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229044008|ref|ZP_04191697.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229127661|ref|ZP_04256650.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|296502827|ref|YP_003664527.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] gi|228655738|gb|EEL11587.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|228725289|gb|EEL76557.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228801158|gb|EEM48055.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|296323879|gb|ADH06807.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] Length = 192 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 130 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 188 >gi|227489258|ref|ZP_03919574.1| LuxR family response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227540847|ref|ZP_03970896.1| LuxR family response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227090789|gb|EEI26101.1| LuxR family response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227183379|gb|EEI64351.1| LuxR family response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 214 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 32/63 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +L E + L L DG ++ EIAEK G S TV + A +R+ + KA+R Sbjct: 150 AEDLPEAQRLILDLLCDGLSNSEIAEKSGYSESTVKKQVSKLIAHFGASSRLNLVVKALR 209 Query: 231 FGY 233 G+ Sbjct: 210 SGF 212 >gi|227511386|ref|ZP_03941435.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227523593|ref|ZP_03953642.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227085337|gb|EEI20649.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227089253|gb|EEI24565.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 219 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R+L++RE L GYT++EIA +L +S TV A+ S KL +R + + A+ Sbjct: 155 RSLSKREREVFPLMALGYTNKEIANRLFISTKTVEAHKASIMHKLSLNSRPELVRYAVHH 214 Query: 232 GYI 234 I Sbjct: 215 HLI 217 >gi|226365866|ref|YP_002783649.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244356|dbj|BAH54704.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 211 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +RSS + LT RE L L G+G ++EIA +L + V TV ++ + K NR++ Sbjct: 145 ERSSTSVALTGREREVLTLVGEGLGNQEIAARLHIGVTTVKTHVANLMEKTGCDNRVR 202 >gi|213616370|ref|ZP_03372196.1| LuxR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 109 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D+L + S + L+ R+ LQ+ G ++++I L +S TV A+L S +LD Sbjct: 36 DWLNSTELESHDIKALSARQREILQMLAAGESNKQIGRALNISTGTVKAHLESLYRRLDV 95 Query: 219 VNRIQA 224 NR QA Sbjct: 96 KNRTQA 101 >gi|196234323|ref|ZP_03133152.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196221590|gb|EDY16131.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 209 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K RS+ +LT+RET L G +++EI LG++ TV +L KL ++R QA Sbjct: 137 KLRSTNRVSLTKRETEVLTQIVKGRSNKEIGYDLGIAEPTVRLHLTHLFKKLHVMDRTQA 196 Query: 225 IAKAIRFGYI 234 A++ G + Sbjct: 197 AMVAVQRGLV 206 >gi|28871223|ref|NP_793842.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|28854473|gb|AAO57537.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] Length = 222 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 34/61 (55%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S++ LTERE L+ G T+++IA+ L LS TVN +L VKL R A + A Sbjct: 156 SSSFQLTEREVDVLRWVACGKTNKDIADILQLSPRTVNKHLEHIYVKLGVETRTAATSVA 215 Query: 229 I 229 + Sbjct: 216 L 216 >gi|238059874|ref|ZP_04604583.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237881685|gb|EEP70513.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 217 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +SA LT+RE L DG ++ EI ++ LS TV ++ + KL +R+QA Sbjct: 144 ASAIARLTDREREILVHVADGLSNAEIGTRMYLSGGTVKDHVSAILTKLKVTSRVQAALI 203 Query: 228 AIRFGYIC 235 A R G + Sbjct: 204 AQRAGLLT 211 >gi|296126426|ref|YP_003633678.1| LuxR family transcriptional regulator [Brachyspira murdochii DSM 12563] gi|296018242|gb|ADG71479.1| transcriptional regulator, LuxR family [Brachyspira murdochii DSM 12563] Length = 320 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A NLT RE L DG T++E++ L +S++TVN ++ + K NR++ + K Sbjct: 261 AVNLTRREREILSYLLDGKTNKEVSLILDISLNTVNNHVANIYEKSGVKNRVELVNK 317 >gi|227536211|ref|ZP_03966260.1| LuxR family response regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227244108|gb|EEI94123.1| LuxR family response regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 216 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LT RE L+L G +TS++IAEKL +S+ TV+ + + KL Sbjct: 156 LTSRELEILRLIGQNFTSQQIAEKLFISMFTVDTHRKNMIYKL 198 >gi|227514972|ref|ZP_03945021.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|227086671|gb|EEI21983.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] Length = 217 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L++RE L GYT++EIA KL +S TV A+ + KL NR + AI Sbjct: 154 SLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLENRADLVRYAIHHH 213 Query: 233 YI 234 I Sbjct: 214 LI 215 >gi|116626901|ref|YP_829057.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116230063|gb|ABJ88772.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 224 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 10/112 (8%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK-------KRSSAARNLTERE 178 NGY++ S L + G Y ++++ ++ F+ RS LT+RE Sbjct: 101 NGYILKDSPADQLITAIREVQRGGSYLSPRLLSRLVDDFRLQGRGGGTRSPRFGTLTKRE 160 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++ +G + +EIA LSV TV A+ + KLD N+ Q + AI+ Sbjct: 161 REILKMLAEGKSVKEIAAFFELSVKTVEAHKFNLMRKLDIHNKAQLVQYAIQ 212 >gi|330467467|ref|YP_004405210.1| LuxR family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810438|gb|AEB44610.1| LuxR family two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 226 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G G ++EI +L LS T ++ A KL A +R Q + A + G Sbjct: 162 LTDREREVLALVGRGLNNDEIGGELFLSPATARTHVSRAMAKLGARDRAQLVVIAYQTGL 221 Query: 234 IC 235 + Sbjct: 222 VS 223 >gi|326385167|ref|ZP_08206835.1| LuxR family two component transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326196132|gb|EGD53338.1| LuxR family two component transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 212 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G ++ +I E+ GLS+++V Y+ + ++ R QA+ + G+ Sbjct: 145 LTQREAEILALIVQGLSNADIVEQTGLSINSVKTYIRTCYRRIGVNTRAQAVLWGVNHGF 204 Query: 234 I 234 + Sbjct: 205 V 205 >gi|326332433|ref|ZP_08198709.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325949746|gb|EGD41810.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 222 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S NLT E L+L G+G T+ +I +++ L+ TV Y+ S KL +R QA Sbjct: 154 KTNSVFENLTNHERRILELIGEGLTNRQIGKEMHLAEKTVKNYVSSLLAKLGLESRTQA 212 >gi|296167213|ref|ZP_06849619.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897454|gb|EFG77054.1| DNA-binding response regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 238 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE L+L +G ++ I E+L +S +T ++ + VK A NR QA Sbjct: 177 LTEREVEVLRLLAEGLSNRAIGERLFISTNTAANHVRNILVKTGAANRTQA 227 >gi|302538977|ref|ZP_07291319.1| response regulator [Streptomyces sp. C] gi|302447872|gb|EFL19688.1| response regulator [Streptomyces sp. C] Length = 222 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 30/53 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE L G G ++ EIA L L+ TV ++LG +KL +RIQA+ Sbjct: 158 RLSAREREVLVEVGRGLSNAEIAAALSLAEATVKSHLGRVLLKLGLRDRIQAV 210 >gi|226356513|ref|YP_002786253.1| DNA-binding response regulator [Deinococcus deserti VCD115] gi|226318503|gb|ACO46499.1| putative DNA-binding response regulator [Deinococcus deserti VCD115] Length = 216 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 7/82 (8%) Query: 152 ACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A +++ DF RS R +LT +ET LQL G ++ +IA+ G+S TV ++ Sbjct: 134 AARRLVRDF------RSPEMRESLTPKETIVLQLIARGCSNRDIAQDQGVSEATVKTHVS 187 Query: 211 SATVKLDAVNRIQAIAKAIRFG 232 KL +R QA A+R G Sbjct: 188 RLLSKLGLESRTQAALYALRHG 209 >gi|170736657|ref|YP_001777917.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818845|gb|ACA93427.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 321 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 17/157 (10%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV 145 P W I+ IE R + GL +G++ P+R NG ++ + + E+ Sbjct: 172 PYRWADIRGLNRIEQRVLGEAR-DAGLT--SGVSIPLR---EANGDILLVN-LASPSPEI 224 Query: 146 IIEAH-------GACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 E H GA + + L K R A L+ R+ CL G +S IA Sbjct: 225 KTEVHMRLASLIGALFH--QELHRLMKPHRPEPALELSPRQQECLAWVARGKSSWAIAAI 282 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G+S HTV+ ++ A L +R A A+ G I Sbjct: 283 VGISPHTVDYHIAEAMKILGINSRTAAAVHAVTTGLI 319 >gi|229543630|ref|ZP_04432690.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229328050|gb|EEN93725.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 74 Score = 37.7 bits (86), Expect = 1.4, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREKEVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|326381413|ref|ZP_08203107.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326199660|gb|EGD56840.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 212 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE G ++ EIA +L +SV TV A++ KLDA NR+Q AIR Sbjct: 152 LTDREREVAVCLARGASNAEIAAELYMSVATVKAHISHIFTKLDASNRVQV---AIRM 206 >gi|326331827|ref|ZP_08198114.1| regulatory protein, LuxR:Response regulator receiver [Nocardioidaceae bacterium Broad-1] gi|325950324|gb|EGD42377.1| regulatory protein, LuxR:Response regulator receiver [Nocardioidaceae bacterium Broad-1] Length = 224 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 8/91 (8%) Query: 152 ACYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 A +I+ +L++ +R++ R LT RE L L G +++EIA++L +S T Sbjct: 132 ATRSLISRYLKV-DRRATGGRFDARRLEELTPREREILVLVAGGLSNQEIADELVISPFT 190 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++ + KLDA R Q + A G + Sbjct: 191 AKTHVNNMMTKLDAPGRAQLVIWAYESGLVT 221 >gi|228990612|ref|ZP_04150577.1| Regulatory protein to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Bacillus pseudomycoides DSM 12442] gi|228769138|gb|EEM17736.1| Regulatory protein to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Bacillus pseudomycoides DSM 12442] Length = 55 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L + G ++EI EKL +S+ TV ++ + KL NR++AI KA+ G I Sbjct: 2 LIVLATGAINKEIGEKLFISISTVKTHIINIYTKLQVSNRVEAIKKALEHGLIT 55 >gi|284030284|ref|YP_003380215.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809577|gb|ADB31416.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 220 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G ++ EIA +L +S TV A++G KL+ +R+Q + A G Sbjct: 154 QLTDREREVLVEVAKGRSNAEIAGELMVSAATVKAHVGRILTKLELRDRVQIVVLAYETG 213 Query: 233 YI 234 + Sbjct: 214 VV 215 >gi|148262815|ref|YP_001229521.1| response regulator receiver protein [Geobacter uraniireducens Rf4] gi|146396315|gb|ABQ24948.1| response regulator receiver protein [Geobacter uraniireducens Rf4] Length = 227 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK--LDAVNRI 222 + + S+ L+ERE + L G G T+ ++A G+SV TV +YLG K LD + + Sbjct: 159 RTQESSLDALSERERQIVSLLGQGETNIDMAAAFGISVRTVESYLGRIIEKLGLDGMKEL 218 Query: 223 QAIAKAIR 230 + +A I+ Sbjct: 219 RRLAIRIK 226 >gi|332685604|ref|YP_004455378.1| two-component response regulator [Melissococcus plutonius ATCC 35311] gi|332369613|dbj|BAK20569.1| two-component response regulator [Melissococcus plutonius ATCC 35311] Length = 201 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G +++IAE L LS TV Y+ + K +RI+AI A G+ Sbjct: 141 LTDREIEILNLLKKGANTKQIAENLFLSNGTVRNYISAILNKTGTKSRIEAINLANEQGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|325066413|ref|ZP_08125086.1| two component transcriptional regulator, LuxR family protein [Actinomyces oris K20] Length = 244 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 146 IIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 ++ GA D +E + + S LT+RE L L G T++EI ++ LS+ Sbjct: 145 VLPGDGAGRHASQDSVEAVRAAEASQQVAGLTQREREILALIALGLTNQEICDREWLSMP 204 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ K +R+Q + A+R G I Sbjct: 205 TVKTHVSHLLSKTGCRDRVQLVLLALRGGVI 235 >gi|270264188|ref|ZP_06192455.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13] gi|270041837|gb|EFA14934.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13] Length = 249 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 27/52 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 T RE L A G T EIA G+SV TV ++G+ VKL N QAI Sbjct: 181 FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAI 232 >gi|271965145|ref|YP_003339341.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508320|gb|ACZ86598.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 213 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 28/49 (57%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 T+RE +Q+ G + EIA +L +S TV A++ + KL NR+Q Sbjct: 156 TDRERQVVQVVARGLANAEIARELSMSETTVKAHVSRSLAKLGLANRVQ 204 >gi|256423122|ref|YP_003123775.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038030|gb|ACU61574.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 208 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K ++ + L+ RE + +QL G + EIA+KL L + TV+ Y KL N I+ Sbjct: 141 KSATNPIQRLSSRENNIMQLLIKGSSVAEIADKLSLQISTVSTYKKRIFEKLQVSNVIEM 200 Query: 225 IAKA 228 I K Sbjct: 201 IEKV 204 >gi|297561050|ref|YP_003680024.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845498|gb|ADH67518.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 216 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 8/114 (7%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 R+G+ V EFL + V +V++ L ++R +A LT RET L Sbjct: 100 RVGYLLKDRVADIDEFLSVLRRVAGGGAAIDPEVVSQLLS--RRRDNALARLTPRETEVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN------RIQAIAKAIR 230 +L G + +A +L ++ V ++ S KLD + R+QA+ + +R Sbjct: 158 ELMAQGLNNAGVASRLTVTERAVEKHIRSIFTKLDLGHDDHDHRRVQAVLRYLR 211 >gi|182433997|ref|YP_001821716.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178462513|dbj|BAG17033.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 225 Score = 37.7 bits (86), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 33/70 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R A LT RE L DG ++ EI +L ++ TV +L KLD +R A Sbjct: 145 RMRRPAPVTLTPREVDVLGAVADGLSNVEIGRRLVIAEATVKTHLLRVFAKLDVADRTHA 204 Query: 225 IAKAIRFGYI 234 + +A+ + Sbjct: 205 VVRALELNLL 214 >gi|326797895|ref|YP_004315714.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Sphingobacterium sp. 21] gi|326548659|gb|ADZ77044.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Sphingobacterium sp. 21] Length = 188 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGD-GYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 F ELF + + R+L E+ +L+ D GY+ ++IAE+L +S TV A++G A L A Sbjct: 119 FNELFSQLNLYVRDLPEKCRLVFKLSRDHGYSQKQIAEELKISEKTVEAHMGKAIRVLRA 178 >gi|293194682|ref|ZP_06610050.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] gi|292819661|gb|EFF78680.1| DNA-binding response regulator [Actinomyces odontolyticus F0309] Length = 213 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 3/106 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G+++ + LA+ V A G + I L L + S+ + LT+RE L+ G Sbjct: 111 TGFMVKDAPVEALADGVRTVAAGG--RAIDQSLAL-EALSAGSSPLTDREADVLREVEGG 167 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T +IA LGLS TV ++ S+ +K+DA R +A + A G++ Sbjct: 168 GTIADIAHSLGLSQGTVRNHVSSSMLKMDARTRAEAASLARAAGWL 213 >gi|239831167|ref|ZP_04679496.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239823434|gb|EEQ95002.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 231 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT ++T L + +G +++IA +LG+S TV A++ + KL +R QA+ R Sbjct: 164 RTLTPQQTRVLTMLAEGLLNKQIAYELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRI 223 Query: 232 G 232 G Sbjct: 224 G 224 >gi|229817781|ref|ZP_04448063.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM 20098] gi|229785570|gb|EEP21684.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM 20098] Length = 248 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ Sbjct: 188 LTDREREVLIEIAHGLSNQEIADKLFISLTTVKTHVAHILSKINARDRVQAV 239 >gi|154508409|ref|ZP_02044051.1| hypothetical protein ACTODO_00906 [Actinomyces odontolyticus ATCC 17982] gi|153798043|gb|EDN80463.1| hypothetical protein ACTODO_00906 [Actinomyces odontolyticus ATCC 17982] Length = 213 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 3/106 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G+++ + LA+ V A G + I L L + S+ + LT+RE L+ G Sbjct: 111 TGFMVKDAPVEALADGVRTVAAGG--RAIDQSLAL-EALSAGSSPLTDREADVLREVEGG 167 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T +IA LGLS TV ++ S+ +K+DA R +A A G++ Sbjct: 168 GTIADIAHSLGLSQGTVRNHVSSSMLKMDARTRAEAAFLARAAGWL 213 >gi|325282058|ref|YP_004254600.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Odoribacter splanchnicus DSM 20712] gi|324313867|gb|ADY34420.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Odoribacter splanchnicus DSM 20712] Length = 193 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%) Query: 162 ELFKKR-----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ELF+K + L+E++ + L G+ ++EIAE LG+S TV A+L A KL Sbjct: 118 ELFRKNLQEVMFDSINKLSEQQREVMMLKCKGFNNDEIAELLGISKRTVEAHLNKAYKKL 177 >gi|325109301|ref|YP_004270369.1| LuxR family transcriptional regulator [Planctomyces brasiliensis DSM 5305] gi|324969569|gb|ADY60347.1| two component transcriptional regulator, LuxR family [Planctomyces brasiliensis DSM 5305] Length = 234 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 34/58 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 ++L++RE + L +G TS EI+E+L + + TV+A+ + K+ A N I K + Sbjct: 166 QSLSKRELEVVDLVIEGLTSREISERLDIKIKTVDAHRANLMRKMGATNVADLINKIV 223 >gi|320009015|gb|ADW03865.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 231 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 170 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 218 >gi|297589527|ref|ZP_06948168.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|283471613|emb|CAQ50824.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Staphylococcus aureus subsp. aureus ST398] gi|297578038|gb|EFH96751.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298695655|gb|ADI98877.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|312437187|gb|ADQ76258.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|323439615|gb|EGA97334.1| two-component response regulator [Staphylococcus aureus O11] gi|323442719|gb|EGB00346.1| two-component response regulator [Staphylococcus aureus O46] Length = 200 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY ++EIAEKL +SV TV A+ KL ++ + + Sbjct: 132 SDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEY 191 Query: 228 AIR 230 A++ Sbjct: 192 ALK 194 >gi|297201836|ref|ZP_06919233.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197717312|gb|EDY61346.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 241 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 180 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 228 >gi|124024957|ref|YP_001014073.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] gi|123960025|gb|ABM74808.1| two-component response regulator [Prochlorococcus marinus str. NATL1A] Length = 242 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 33/64 (51%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ + N T RE S LQL +G ++EIA +L S+ V Y+ +K +R + + Sbjct: 173 RKDDSIPNFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELV 232 Query: 226 AKAI 229 A+ Sbjct: 233 RYAL 236 >gi|37913119|gb|AAR05381.1| probable two-component response regulator [Aeromonas hydrophila] Length = 207 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 34/64 (53%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ L++RE S L L G+T++ IAE + LS TV+ Y KL+ N + I+ Sbjct: 140 RADLLSTLSDREMSVLLLICQGHTNKHIAENMLLSEKTVSTYKTRLMQKLNVTNMVDLIS 199 Query: 227 KAIR 230 A R Sbjct: 200 LARR 203 >gi|29832581|ref|NP_827215.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609701|dbj|BAC73750.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 227 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%) Query: 174 LTERETSCL-QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L Q+AG G++++EIAE+L +S TV ++ A KL A +R Q + A G Sbjct: 162 LTGREREVLVQVAG-GHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYESG 220 Query: 233 YI 234 + Sbjct: 221 LV 222 >gi|72383373|ref|YP_292728.1| two component LuxR family transcriptional regulator [Prochlorococcus marinus str. NATL2A] gi|72003223|gb|AAZ59025.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. NATL2A] Length = 242 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 33/64 (51%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ + N T RE S LQL +G ++EIA +L S+ V Y+ +K +R + + Sbjct: 173 RKDDSIPNFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELV 232 Query: 226 AKAI 229 A+ Sbjct: 233 RYAL 236 >gi|163848766|ref|YP_001636810.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526715|ref|YP_002571186.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670055|gb|ABY36421.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450594|gb|ACM54860.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 218 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 33/66 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + LT RE L+L G +++EIAE L +S TV ++ + KL +R Q Sbjct: 143 RPNEAPVEQLTPREMDVLRLVAKGMSNKEIAETLIVSEKTVKTHISNILSKLHLADRTQV 202 Query: 225 IAKAIR 230 A+R Sbjct: 203 AIYALR 208 >gi|326330507|ref|ZP_08196815.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325951782|gb|EGD43814.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 226 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L G G ++ EIAE ++ TV ++G K + +R+Q + A G Sbjct: 164 LTEREREVLTLVGRGLSNTEIAETFVVAEATVKTHVGRLLAKTGSRDRVQLVVLAYETGL 223 Query: 234 I 234 + Sbjct: 224 V 224 >gi|315654297|ref|ZP_07907205.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] gi|315491332|gb|EFU80949.1| DNA-binding response regulator [Mobiluncus curtisii ATCC 51333] Length = 201 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L++A G +EIA ++ LS TV YL SA K A A KA G+ Sbjct: 141 LTEREIEVLKIAEKGLKVQEIATQVYLSPGTVRNYLSSAIGKTHADTSAGAARKARELGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|307326540|ref|ZP_07605734.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887734|gb|EFN18726.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 926 Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 29/58 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K +A LT E LA GYT+ EIA KL ++ TV +L KLD +R Q Sbjct: 856 KSDTAIERLTHSERRVASLAAMGYTNREIAGKLYVTASTVEQHLTRVFRKLDIKHREQ 913 >gi|288553643|ref|YP_003425578.1| transcriptional regulator [Bacillus pseudofirmus OF4] gi|288544803|gb|ADC48686.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus pseudofirmus OF4] Length = 74 Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE +L T+ EIA++L +S TV ++ + KL R QA+ + IR G Sbjct: 12 LTKREREVFELLVQDKTTREIAQELFISEKTVRNHISNTMQKLGVKGRSQAVIELIRLGE 71 Query: 234 I 234 I Sbjct: 72 I 72 >gi|261218338|ref|ZP_05932619.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261320813|ref|ZP_05960010.1| two component transcriptional regulator [Brucella ceti M644/93/1] gi|260923427|gb|EEX89995.1| two component transcriptional regulator [Brucella ceti M13/05/1] gi|261293503|gb|EEX96999.1| two component transcriptional regulator [Brucella ceti M644/93/1] Length = 157 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT ++T L + +G +++IA +LG+S TV A++ + KL +R QA+ R Sbjct: 91 RTLTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRI 150 Query: 232 G 232 G Sbjct: 151 G 151 >gi|242243808|ref|ZP_04798252.1| transcriptional regulator [Staphylococcus epidermidis W23144] gi|242232744|gb|EES35056.1| transcriptional regulator [Staphylococcus epidermidis W23144] Length = 218 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209 Query: 228 AIR 230 A++ Sbjct: 210 ALK 212 >gi|238926042|ref|YP_002939560.1| two-component response regulator (extracellular proteinase response regulator) [Eubacterium rectale ATCC 33656] gi|238877719|gb|ACR77426.1| two-component response regulator (extracellular proteinase response regulator) [Eubacterium rectale ATCC 33656] gi|291526556|emb|CBK92143.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium rectale DSM 17629] gi|291529198|emb|CBK94784.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium rectale M104/1] Length = 214 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 10/114 (8%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFL------ELFKKRSSAAR--NLTERETS 180 NGYV+ SE L + A G Y I L ++ +K + LT+RE Sbjct: 100 NGYVLKDSESAELKKAIFTIADGETY--IQPSLIPALNSKMIQKNEDELKIDALTKREME 157 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G + +IA+++ +S TV ++ S KL+ +R QA AIR I Sbjct: 158 VLKEMAVGKFNRDIAKEMKISERTVKNHISSIFKKLEVTDRTQAAVFAIRNNII 211 >gi|300778493|ref|ZP_07088351.1| response regulator transcription regulator protein [Chryseobacterium gleum ATCC 35910] gi|300504003|gb|EFK35143.1| response regulator transcription regulator protein [Chryseobacterium gleum ATCC 35910] Length = 203 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 28/55 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 KR++ L+ RE +L DG + EIA KL + + TV+ Y KLD N Sbjct: 137 KRNNPVEKLSSREYEIFKLLADGNGNLEIANKLNIQMSTVSTYKKRIFQKLDVTN 191 >gi|254445671|ref|ZP_05059147.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198259979|gb|EDY84287.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 213 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SS +L+ RE L+ G+T++EIA KL ++ TV+ +L + KL R +A K Sbjct: 148 SSDVDSLSNREREVLEFVAQGFTNKEIAAKLSVTPETVHWHLKNCYKKLHVRTRTEAAMK 207 >gi|182436531|ref|YP_001824250.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777153|ref|ZP_08236418.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178465047|dbj|BAG19567.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657486|gb|EGE42332.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 231 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 170 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 218 >gi|39979986|gb|AAR32909.1| SplR [Serratia plymuthica] Length = 249 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 27/52 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 T RE L A G T EIA G+SV TV ++G+ VKL N QAI Sbjct: 181 FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAI 232 >gi|28192612|gb|AAO06927.1| GdmRII [Streptomyces hygroscopicus] Length = 926 Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 29/58 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K +A LT E LA GYT+ EIA KL ++ TV +L KLD +R Q Sbjct: 856 KSDTAIERLTHSERRVASLAAMGYTNREIAGKLYVTASTVEQHLTRVFRKLDIKHREQ 913 >gi|63033860|gb|AAY28234.1| HbmRII [Streptomyces hygroscopicus] Length = 926 Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 29/58 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K +A LT E LA GYT+ EIA KL ++ TV +L KLD +R Q Sbjct: 856 KSDTAIERLTHSERRVASLAAMGYTNREIAGKLYVTASTVEQHLTRVFRKLDIKHREQ 913 >gi|298370036|ref|ZP_06981352.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral taxon 014 str. F0314] gi|298281496|gb|EFI22985.1| nitrate/nitrite response regulator protein NarL [Neisseria sp. oral taxon 014 str. F0314] Length = 219 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G++++ IA+KL L+ TV AY+ S KL +R+QA AI+ Sbjct: 152 LTPRERETLHHLAIGHSNKVIAKKLNLAESTVKAYVQSILRKLGLSSRVQAAVYAIQ 208 >gi|282863886|ref|ZP_06272944.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282561587|gb|EFB67131.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 218 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTE+E L L G+G T+ I E+L L+ T+ Y+ S KL R QA A R Sbjct: 155 GLTEQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLAKLGMERRSQAAAYVARL 213 >gi|256376044|ref|YP_003099704.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920347|gb|ACU35858.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 218 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +++ R LTE+E + L L G G T+ +IAE + L+ TV Y+ KL R QA Sbjct: 142 REQGDPIRMLTEQERTVLDLIGQGMTNRQIAESMFLAEKTVKNYVSHLLAKLGLERRTQA 201 >gi|239943689|ref|ZP_04695626.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990140|ref|ZP_04710804.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447153|ref|ZP_06586543.1| two-component system DNA-binding response regulator [Streptomyces roseosporus NRRL 15998] gi|291350100|gb|EFE77004.1| two-component system DNA-binding response regulator [Streptomyces roseosporus NRRL 15998] Length = 231 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 170 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 218 >gi|239943004|ref|ZP_04694941.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989462|ref|ZP_04710126.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291446476|ref|ZP_06585866.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349423|gb|EFE76327.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 222 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 11/107 (10%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK--KRSSAAR--NLTER 177 +G+++ + LA+ V + A G ++IT+F +L + + + AR +LTER Sbjct: 103 SGFLLKDASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAETPRPPALARIGDLTER 162 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ET L L G ++ EIA L ++ T+ ++ VKL +R QA Sbjct: 163 ETEVLVLIAQGLSNAEIASHLIVAESTIKTHVSRILVKLGLRDRTQA 209 >gi|222066056|emb|CAX21483.1| ppoR luxR family protein [Pseudomonas putida] Length = 235 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +++RE L+ + G T+ ++A L LS TVN ++ S K A N+ A+A A G Sbjct: 174 KMSKRELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTSAANKAGAVAIAALRG 233 Query: 233 YI 234 +I Sbjct: 234 WI 235 >gi|56718415|gb|AAW27922.1| SplR [Serratia plymuthica] Length = 249 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 27/52 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 T RE L A G T EIA G+SV TV ++G+ VKL N QAI Sbjct: 181 FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAI 232 >gi|21218760|ref|NP_624539.1| LuxR family two-component response regulator [Streptomyces coelicolor A3(2)] gi|5777679|emb|CAB53428.1| putative luxR family two-component response regulator [Streptomyces coelicolor A3(2)] Length = 233 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L+L G+G T+ +I ++L L+ TV ++ KL RIQA Sbjct: 165 GLTDREREILELIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQA 216 >gi|331699140|ref|YP_004335379.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953829|gb|AEA27526.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 224 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 11/117 (9%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRS--------SAARNLTER 177 +G+++ +E L + V + A G V +E F RS SA LT+R Sbjct: 102 SGFLVKDTEPAELVHAVRVVADGDALLSPGVTRRLIEEFAVRSGPAGAVAASALTVLTDR 161 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L G T+++IAE+L +S T ++ A KL +R Q + A G + Sbjct: 162 EREVVALVAGGLTNDDIAERLVVSPATAKTHVSRAMGKLGCRDRAQLVVLAYESGLV 218 >gi|229178632|ref|ZP_04305996.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228604790|gb|EEK62247.1| DNA-binding response regulator [Bacillus cereus 172560W] Length = 192 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 130 LTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 188 >gi|237808386|ref|YP_002892826.1| two component transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] gi|237500647|gb|ACQ93240.1| two component transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] Length = 298 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NLT+RE+ L G T+ EIA L +S TVN +L KL+ NR A + ++R Sbjct: 238 NLTKRESQVLYWLSFGKTNWEIATILEMSPRTVNKHLEQIYKKLNVDNRTAAASISLRL 296 >gi|254383084|ref|ZP_04998438.1| two-component system DNA-binding response regulator [Streptomyces sp. Mg1] gi|194341983|gb|EDX22949.1| two-component system DNA-binding response regulator [Streptomyces sp. Mg1] Length = 235 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 174 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 222 >gi|138894013|ref|YP_001124466.1| response regulator [Geobacillus thermodenitrificans NG80-2] gi|134265526|gb|ABO65721.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Geobacillus thermodenitrificans NG80-2] Length = 531 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L+L G ++ EI+E+L +SVHTV ++ + K+ +R Q IA Sbjct: 459 SEQLTSREMDVLELLVQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIA 514 >gi|146280183|ref|YP_001170340.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC 17025] gi|145558424|gb|ABP73035.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC 17025] Length = 207 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 45/95 (47%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GYV + L N + G Y ++ L + + + L+ +E L+ +G Sbjct: 103 GYVEKSQSARSLVNAINFVLAGEIYVPMSLRLNSVRPSITDEKGLSPKELEVLRCLTNGL 162 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++EIA+ LG+S TV ++ S K++ NR QA Sbjct: 163 MNKEIAQTLGISEVTVKMHVRSICAKMNVKNRTQA 197 >gi|313107624|ref|ZP_07793809.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa 39016] gi|310880311|gb|EFQ38905.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa 39016] Length = 268 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LT RE+ ++L DGY+++EIA++L LS+ T+ + KL+ Sbjct: 202 LTARESDVIRLMLDGYSNKEIADRLTLSIATIKVHRRHIYAKLN 245 >gi|307296141|ref|ZP_07575972.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Sphingobium chlorophenolicum L-1] gi|306878312|gb|EFN09534.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Sphingobium chlorophenolicum L-1] Length = 844 Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE+ L L G TS+ IA+ + LS+ T ++ + KL NR A+++A R Sbjct: 784 LTARESEVLALLDSGLTSQAIADHIDLSLSTTKWHIQNIYNKLGVRNRSGALSRARRLAM 843 Query: 234 I 234 + Sbjct: 844 L 844 >gi|322432955|ref|YP_004210204.1| LuxR family transcriptional regulator [Acidobacterium sp. MP5ACTX9] gi|321165182|gb|ADW70886.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 210 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+ G +++ IA L LS HTV ++ + KL A +R A+ A+R G+ Sbjct: 147 LSAREIEVLRHVAAGNSNKIIASNLTLSEHTVKGHIKNILSKLGASDRTHAVMIALRRGF 206 Query: 234 I 234 + Sbjct: 207 L 207 >gi|297626683|ref|YP_003688446.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922448|emb|CBL57021.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 217 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ G ++ EIA +L +S TV ++ + KL +R+QA+A A + G Sbjct: 156 LTDREVEVLRALARGLSNAEIAAELFVSEATVKTHVSNVLSKLGLRDRVQAVAHAYQHGL 215 Query: 234 IC 235 + Sbjct: 216 VS 217 >gi|171057984|ref|YP_001790333.1| two component LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775429|gb|ACB33568.1| two component transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 273 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + L + S A LT R+ L L +G ++ IA++LGLSV TV ++ + L + Sbjct: 184 MALPRPASLDALGLTPRQAKVLMLLMEGKANKVIAKELGLSVETVKDHVAAVLRCLGVRS 243 Query: 221 RIQAI 225 R+QA+ Sbjct: 244 RMQAV 248 >gi|159901708|ref|YP_001547954.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894747|gb|ABX07826.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 225 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 50/114 (43%), Gaps = 12/114 (10%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----------LTERE 178 +GYV+ ++ + L V +A A ++++ LE + S N LT RE Sbjct: 98 SGYVLKEADAMELVTAV--QAVAAGRRILSSHLEGYWHMPSFRPNNTIPIDPYDLLTSRE 155 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 A G TS +IA L LSV TV AY S KL + I A+R G Sbjct: 156 RDVFAGAMQGNTSVQIAAHLCLSVRTVEAYRASMLRKLGLRTQTDLICFAVRTG 209 >gi|75812776|ref|YP_320393.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705532|gb|ABA25204.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 209 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + L+ G ++ EIA L + TV +++ KLD +R QA+ A++ G Sbjct: 147 LSERELAVLRSLAQGMSNAEIAAALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKRGI 206 Query: 234 IC 235 + Sbjct: 207 VS 208 >gi|332296384|ref|YP_004438307.1| two component transcriptional regulator, LuxR family [Thermodesulfobium narugense DSM 14796] gi|332179487|gb|AEE15176.1| two component transcriptional regulator, LuxR family [Thermodesulfobium narugense DSM 14796] Length = 232 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE+ L+ GY ++E+A+KL LSV T+ Y + K++A + + AI+ G Sbjct: 155 KLSTRESQVLRYTALGYGNKEMAKKLNLSVKTIETYKLRISEKINAQKKSDLVKYAIKEG 214 Query: 233 YI 234 + Sbjct: 215 LL 216 >gi|331694577|ref|YP_004330816.1| LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326949266|gb|AEA22963.1| transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 748 Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 28/60 (46%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ LT RE L G T+ EIA +L LSV TV ++ A K+ R Q A Sbjct: 677 RAGPGAGLTRREREIAALVATGMTNREIAGRLQLSVRTVEVHVDHALTKVGLRTRTQLAA 736 >gi|325965270|ref|YP_004243176.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323471357|gb|ADX75042.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 230 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RET L+ +G ++ EIA + LS TV ++ KL +R+QA+ A G Sbjct: 162 DLTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAYETG 221 Query: 233 YIC 235 + Sbjct: 222 LVV 224 >gi|302206769|gb|ADL11111.1| Two component transcriptional regulator, LuxR family and REC superfamily [Corynebacterium pseudotuberculosis C231] gi|308277014|gb|ADO26913.1| Two component transcriptional regulator, LuxR family and REC superfamily [Corynebacterium pseudotuberculosis I19] Length = 208 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 10/99 (10%) Query: 144 EVIIEAHGACYQ----VITDFLELFKKR------SSAARNLTERETSCLQLAGDGYTSEE 193 E+++EA + Y+ + + L L R SS+ LT RE +L G T++E Sbjct: 106 ELLVEAIRSAYRGDVLISPEVLSLLLDRRSKPNTSSSDLPLTCRELEVARLIAYGRTNQE 165 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 IA +L +S+ TV ++ +LD NR++ A R G Sbjct: 166 IATELFISLSTVKTHVARIQERLDVRNRVEIAAALWRSG 204 >gi|293980665|ref|YP_003543423.1| putative transposase [Sphingobium japonicum UT26S] gi|292677682|dbj|BAI99197.1| putative transposase [Sphingobium japonicum UT26S] Length = 365 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 1/49 (2%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 FLE +R A R+L++R L L +G S+E+AE+LG+ HTV + Sbjct: 18 FLEAQVRRHKAPRSLSDRCRMVL-LCAEGLQSKEVAERLGVHEHTVGKW 65 >gi|237846558|gb|ACR22887.1| SplR [Serratia plymuthica] Length = 249 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 27/52 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 T RE L A G T EIA G+SV TV ++G+ VKL N QAI Sbjct: 181 FTPRENEVLYWASMGKTYGEIAAIAGISVSTVKFHMGNIVVKLGVSNARQAI 232 >gi|256390814|ref|YP_003112378.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256357040|gb|ACU70537.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 30/62 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE L G G ++ EI +G+S TV Y+ KLDA +R Q + A G Sbjct: 162 ITGREREALTFVGRGLSNAEIQVAMGISAATVKTYVTRLLAKLDARDRAQLVIAAYENGL 221 Query: 234 IC 235 + Sbjct: 222 VT 223 >gi|203284689|ref|YP_002222429.1| hypothetical protein BDU_801 [Borrelia duttonii Ly] gi|201084132|gb|ACH93723.1| uncharacterized conserved protein [Borrelia duttonii Ly] Length = 1463 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 6/63 (9%) Query: 64 IPNILIETYGDDFLFHF--NSGLLPIIWQSIQEETVIES----SGQLSVRLEGGLLPFAG 117 I N +++T DDFLF+F N GL I++ + E ++ S G+ LE G + F+ Sbjct: 180 INNFILKTIDDDFLFNFVVNFGLPEILYPDVNSENIVNSVFYFEGKFKKDLEDGYINFSF 239 Query: 118 IAF 120 + F Sbjct: 240 LEF 242 >gi|167949597|ref|ZP_02536671.1| response regulator [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 181 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 7/90 (7%) Query: 147 IEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 + + A ++TD+ KR SA + L+ RET + + +G ++EI++ L LS T Sbjct: 90 VSSDVARKHILTDW-----KRHSATPFQGLSSRETQVMLMILEGQRNQEISDGLSLSPKT 144 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V+ Y KLD N ++ A R G + Sbjct: 145 VSTYRQRIYEKLDVRNDVELTRLAYRHGIL 174 >gi|330961081|gb|EGH61341.1| DNA-binding response regulator CorR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 99 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S LT R+ L L G T++EIA +L S HTV +++ + L A R +A Sbjct: 32 ASTPLTLTSRQRQVLGLLCQGLTNKEIASQLWRSEHTVRSHVQAILTILQASCRTEAADT 91 Query: 228 AIRFGYI 234 A R G + Sbjct: 92 ARRLGLV 98 >gi|311896491|dbj|BAJ28899.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 164 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 212 >gi|307326345|ref|ZP_07605541.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306888008|gb|EFN18998.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 228 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ A LT RE +L G T++EI +L LS+ TV +L + KL NR++ A Sbjct: 159 ATGANPLTGRELDVARLVAVGRTNQEICAELHLSLSTVKTHLSNIQTKLAVRNRVEIAAW 218 Query: 228 AIRFGYI 234 A G + Sbjct: 219 AWDTGAV 225 >gi|300785793|ref|YP_003766084.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299795307|gb|ADJ45682.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 888 Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE S L+L + +EIAE L +S +TV ++ KLD +R +A+ A G Sbjct: 819 LTERERSVLRLLPTQRSIDEIAEDLTVSPNTVKTHVRGIYAKLDVRSRREAVTIAQERGL 878 Query: 234 I 234 + Sbjct: 879 L 879 >gi|298249263|ref|ZP_06973067.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547267|gb|EFH81134.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 889 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 42/66 (63%), Gaps = 2/66 (3%) Query: 165 KKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++R+S++ + L+ERE ++L G +++EIA+ L +++ TV ++ KL +R Sbjct: 818 ERRTSSSSHILLSEREREIVRLLASGLSNQEIADHLVIAMSTVKWHVRQIFNKLGVNSRT 877 Query: 223 QAIAKA 228 QAIA+A Sbjct: 878 QAIAQA 883 >gi|157370075|ref|YP_001478064.1| LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157321839|gb|ABV40936.1| transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 238 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 16/134 (11%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEG--GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 P +W + + + E Q G G+L FAG + PV+ F FL LA Sbjct: 100 PELWWRMAQFGIREGWSQSVKDCYGRLGILTFAGKSIPVQSPQASARNETF---FLWLAQ 156 Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSV 202 V H + L A ++ LT RE L+ +G TSEE A +GLS Sbjct: 157 MV----HKTLREA------LISVNDEAIKDVLTLREKDILRWCSEGKTSEETALLMGLSE 206 Query: 203 HTVNAYLGSATVKL 216 TVN ++G++ KL Sbjct: 207 RTVNFHIGNSIKKL 220 >gi|150395391|ref|YP_001325858.1| two component LuxR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150026906|gb|ABR59023.1| two component transcriptional regulator, LuxR family [Sinorhizobium medicae WSM419] Length = 215 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/64 (26%), Positives = 39/64 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT +++ L + +G +++IA +LG+S T+ A++ + +KL+ +R QA+ + + Sbjct: 150 QTLTPQQSRVLSMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAVIQLSKL 209 Query: 232 GYIC 235 G + Sbjct: 210 GSVA 213 >gi|38230157|gb|AAR14177.1| AHL receptor-like protein [Aeromonas sp. NLEP A-1607] Length = 58 Score = 37.4 bits (85), Expect = 1.5, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+R T CL A +G TS IA LG++ T N +L T K ++N AI Sbjct: 7 LTDRXTXCLFXAXEGKTSGXIACXLGITERTXNYHLNXVTRKXGSMNXYXAI 58 >gi|142969|gb|AAA22473.1| germination protein (ttg start codon) [Bacillus subtilis] gi|1770055|emb|CAA99550.1| transcriptional regulator of spore coat genes [Bacillus subtilis] Length = 74 Score = 37.4 bits (85), Expect = 1.5, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 37/68 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K + +LT+RE +L T++EIA +L +S TV ++ +A KL R QA Sbjct: 3 EKEFQSKPSLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQA 62 Query: 225 IAKAIRFG 232 + + +R G Sbjct: 63 VVELLRMG 70 >gi|315091877|gb|EFT63853.1| putative nitrate/nitrite response regulator protein NarL [Propionibacterium acnes HL110PA4] Length = 210 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +LT RE L+ + G ++ +IAE L +S TV +L KL +R Sbjct: 138 LMVRMRSPRTSLTAREFDVLEASAQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRS 197 Query: 223 QAIAKAIRFGYI 234 A+AKA G+I Sbjct: 198 AAVAKARDIGFI 209 >gi|297160149|gb|ADI09861.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 262 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 2/64 (3%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 AR RE L L +GY + A KLGLSV T Y+ L +R QA +A+R Sbjct: 196 ARGRVLREV--LTLMAEGYKDDAAARKLGLSVRTYRRYVADIMRDLRVESRFQAGVRAVR 253 Query: 231 FGYI 234 G + Sbjct: 254 AGLM 257 >gi|271961858|ref|YP_003336054.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505033|gb|ACZ83311.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 216 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G + ++AE+L LS TV ++ + KL NR + + AI G Sbjct: 153 RLTDRETEVLRLVAKGLSYRQVAERLVLSHRTVQNHVQNTLNKLQLHNRAELVRYAIERG 212 >gi|269104524|ref|ZP_06157220.1| transcriptional activator of maltose regulon MalT [Photobacterium damselae subsp. damselae CIP 102761] gi|268161164|gb|EEZ39661.1| transcriptional activator of maltose regulon MalT [Photobacterium damselae subsp. damselae CIP 102761] Length = 902 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L GY++E+IA +L ++ T+ ++ + KL NR +AI A Sbjct: 839 LTQREWQVLGLIYSGYSNEQIASELDVAATTIKTHIRNLYQKLGIANRQEAITTA 893 >gi|229163761|ref|ZP_04291706.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228619728|gb|EEK76609.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 186 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 5/107 (4%) Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQ 183 +GY++ +SE ++ A ++++ + +T L + +++ N LTERE L Sbjct: 73 DGYLLKDSSSEQVVAAIRMVLQGDSVIHPRMTKKLITYHQQTKLESNENELTEREKEILF 132 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 G +++EIAE L +S TV ++ KL+ +R QA+ A+R Sbjct: 133 ELVKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVR 179 >gi|116050578|ref|YP_790603.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115585799|gb|ABJ11814.1| putative transcriptional regulator, LuxR family [Pseudomonas aeruginosa UCBPP-PA14] Length = 268 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LT RE+ ++L DGY+++EIA++L LS+ T+ + KL+ Sbjct: 202 LTARESDVIRLMLDGYSNKEIADRLTLSIATIKVHRRHIYAKLN 245 >gi|29830013|ref|NP_824647.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607123|dbj|BAC71182.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 243 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 182 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 230 >gi|33863672|ref|NP_895232.1| DNA-binding response regulator [Prochlorococcus marinus str. MIT 9313] gi|33635255|emb|CAE21580.1| possible DNA-binding response regulator [Prochlorococcus marinus str. MIT 9313] Length = 232 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 38/69 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S NL+ RE L+ G +++ IA++L LS+ TV +++ + KL A +R A+ Sbjct: 154 KSSRQIDNLSLREGDVLRGICKGMSNQNIADELYLSIDTVKSHVHNLLQKLPARDRTHAV 213 Query: 226 AKAIRFGYI 234 A R G + Sbjct: 214 VVAFRDGLV 222 >gi|308179160|ref|YP_003918566.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307746623|emb|CBT77595.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 234 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 34/70 (48%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 KR +LT RE L+ +G ++ EIA + LS TV ++ KL +R+QA+ Sbjct: 158 KRDPLLDDLTPREQEVLRALAEGLSNAEIAHRFFLSEATVKTHVRRILTKLHLRDRVQAV 217 Query: 226 AKAIRFGYIC 235 A G + Sbjct: 218 VYAYETGLVI 227 >gi|288919194|ref|ZP_06413532.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288349441|gb|EFC83680.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 215 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 8/103 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA-----RNLTERETS 180 +G+V+ +E L + + A G V +E F +R SA LT RE Sbjct: 101 SGFVLKDAEPADLLRAIRVVAAGESLLSPTVTRRVIEAFARRPSAPAAVDLSGLTGRERE 160 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + L G G +++EIA L +S T ++ +KL A +R Q Sbjct: 161 VMGLVGMGLSNDEIAAHLVISPATARTHVSRVMIKLAARDRAQ 203 >gi|320010051|gb|ADW04901.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 224 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G ++ EIA +L LS TV ++G KL +R+Q + A G Sbjct: 156 KLTGREREVMMLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETG 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|239981659|ref|ZP_04704183.1| two-component system response regulator [Streptomyces albus J1074] Length = 229 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT+RE G ++ EIA +L +SV TV A+ + KL A NR+Q Sbjct: 169 TLTDRERDTAHAIAGGLSNPEIAARLHISVATVKAHTTALFTKLSAANRVQ 219 >gi|228919844|ref|ZP_04083201.1| Sensory transduction protein ydfI [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228839798|gb|EEM85082.1| Sensory transduction protein ydfI [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 207 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 NLTE+E L+ G ++EIA +G++ TV AYL + KL +R +A+A +I Sbjct: 144 NLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSI 200 >gi|118476625|ref|YP_893776.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415850|gb|ABK84269.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 219 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 NLTE+E L+ G ++EIA +G++ TV AYL + KL +R +A+A +I Sbjct: 156 NLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSI 212 >gi|157368863|ref|YP_001476852.1| LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157320627|gb|ABV39724.1| transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 215 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 35/58 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A+ LT +E + + +G +++ IA KLG+S+ TV ++ + K + VNR + +A + Sbjct: 153 AQLLTAKEQEIVNMVREGASNKRIALKLGISLSTVKTHMRNIFAKTEVVNRTELVASS 210 >gi|83949682|ref|ZP_00958415.1| transcriptional regulator, LuxR family protein [Roseovarius nubinhibens ISM] gi|83837581|gb|EAP76877.1| transcriptional regulator, LuxR family protein [Roseovarius nubinhibens ISM] Length = 181 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + F +L ++R A LT+RE L G TS+E+ +LGLS T+ Y K Sbjct: 107 VWSFADLSEERPIVA--LTQREREIAILTARGMTSKEVGLELGLSYRTIEVYRARLLKKF 164 Query: 217 DAVNRIQAIAK 227 A N + +AK Sbjct: 165 SARNLAELVAK 175 >gi|329726465|gb|EGG62928.1| oxygen regulatory protein NreC [Staphylococcus epidermidis VCU144] Length = 218 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209 Query: 228 AIR 230 A++ Sbjct: 210 ALK 212 >gi|256790252|ref|ZP_05528683.1| LuxR family two-component response regulator [Streptomyces lividans TK24] gi|289774125|ref|ZP_06533503.1| LuxR family two-component system response regulator [Streptomyces lividans TK24] gi|289704324|gb|EFD71753.1| LuxR family two-component system response regulator [Streptomyces lividans TK24] Length = 233 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L+L G+G T+ +I ++L L+ TV ++ KL RIQA Sbjct: 165 GLTDREREILELIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQA 216 >gi|258655289|ref|YP_003204445.1| LuxR family ATP-dependent transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558514|gb|ACV81456.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Nakamurella multipartita DSM 44233] Length = 884 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 33/56 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LTERE L+ + EIA+ L +SV+TV A+L S KL NR +A+ +A Sbjct: 823 HLTERELIVLKYLPTMLKAGEIADDLFVSVNTVKAHLRSMYRKLGVSNRREAVERA 878 >gi|256833722|ref|YP_003162449.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] gi|256687253|gb|ACV10146.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] Length = 230 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE Q G +++EI++ L +S+ TV ++ K D NR+Q Sbjct: 162 QLTERELDVAQQIAQGKSNQEISQTLYMSIPTVKTHISRIFTKFDVDNRVQ 212 >gi|163801407|ref|ZP_02195306.1| transcriptional regulator MalT [Vibrio sp. AND4] gi|159174896|gb|EDP59696.1| transcriptional regulator MalT [Vibrio sp. AND4] Length = 902 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 35/55 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAISTA 893 >gi|116669783|ref|YP_830716.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116609892|gb|ABK02616.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 926 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + A LT+RE + + LA G + +IA+KL +SV TV +L +KL R + A A Sbjct: 851 TVAPVLTKRERNIVGLAATGLSDRQIADKLQISVRTVEGHLYRCYLKLGIAGRDELAAAA 910 >gi|52787183|ref|YP_093012.1| YvqC [Bacillus licheniformis ATCC 14580] gi|163119642|ref|YP_080588.2| two-component response regulator LiaR [Bacillus licheniformis ATCC 14580] gi|319647713|ref|ZP_08001931.1| YvqC protein [Bacillus sp. BT1B_CT2] gi|52349685|gb|AAU42319.1| YvqC [Bacillus licheniformis ATCC 14580] gi|145903152|gb|AAU24950.2| two-component response regulator LiaR [Bacillus licheniformis ATCC 14580] gi|317390054|gb|EFV70863.1| YvqC protein [Bacillus sp. BT1B_CT2] Length = 211 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 5/67 (7%) Query: 163 LFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L K R SA ++LT RE L+L +G T++ IAE+L +++ TV ++ + KL+ Sbjct: 134 LSKLRHSAGEQPLHQSLTARELEILKLVAEGKTNKGIAEELYITIKTVKTHVTNILSKLE 193 Query: 218 AVNRIQA 224 +R QA Sbjct: 194 VDDRTQA 200 >gi|54025695|ref|YP_119937.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54017203|dbj|BAD58573.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 231 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L+L G G+++ EIA +L L+ TV ++ S A NR++A A+ Sbjct: 160 LTPREQEILRLVGRGWSNAEIAAELHLAPGTVKVHVSSILRTTGARNRVEAALVAV 215 >gi|330719950|gb|EGG98410.1| hypothetical protein imdm_44 [gamma proteobacterium IMCC2047] Length = 224 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 31/51 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTER+ L L G+G ++++IA +L LS +T+ ++ L+ NR QA Sbjct: 156 LTERQKEILLLLGEGRSNKDIARRLDLSENTIKVHVSGVLRALNLNNRTQA 206 >gi|329733822|gb|EGG70146.1| oxygen regulatory protein NreC [Staphylococcus epidermidis VCU028] Length = 218 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209 Query: 228 AIR 230 A++ Sbjct: 210 ALK 212 >gi|296133351|ref|YP_003640598.1| two component transcriptional regulator, LuxR family [Thermincola sp. JR] gi|296031929|gb|ADG82697.1| two component transcriptional regulator, LuxR family [Thermincola potens JR] Length = 226 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L +E L L +G T++EIA+ L LS +T+ Y+ KL+ NR +A A A+R Sbjct: 154 LNPQERRILGLIAEGKTNKEIAQILTLSNNTIKNYVSGILSKLNFSNRAEAAAYAVR 210 >gi|291453521|ref|ZP_06592911.1| two-component system response regulator [Streptomyces albus J1074] gi|291356470|gb|EFE83372.1| two-component system response regulator [Streptomyces albus J1074] Length = 215 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT+RE G ++ EIA +L +SV TV A+ + KL A NR+Q Sbjct: 155 TLTDRERDTAHAIAGGLSNPEIAARLHISVATVKAHTTALFTKLSAANRVQ 205 >gi|239979954|ref|ZP_04702478.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291451807|ref|ZP_06591197.1| two-component system response regulator [Streptomyces albus J1074] gi|291354756|gb|EFE81658.1| two-component system response regulator [Streptomyces albus J1074] Length = 235 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +E+A++L +SV TV +++ + KL NR Sbjct: 174 RLTQREREVLRLIARGYAYKEVAKQLYISVKTVESHVSAVLRKLQLSNR 222 >gi|223934739|ref|ZP_03626659.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896694|gb|EEF63135.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 216 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 7/94 (7%) Query: 144 EVIIEAHGA----CYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAE 196 E I + H Q+ ++ F K + S LT E L GY +EIAE Sbjct: 122 EAIFDVHAGGSPMTPQLARRVVQFFSKPTGDTSPVARLTPGEKEFLDQLAAGYAYKEIAE 181 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++ +S+ TV +Y+ + KL +R +A+ K ++ Sbjct: 182 RMRISIDTVRSYVRTVYEKLHVHSRTEAVVKYLK 215 >gi|56696450|ref|YP_166807.1| LuxR family DNA-binding response regulator [Ruegeria pomeroyi DSS-3] gi|56678187|gb|AAV94853.1| DNA-binding response regulator, LuxR family [Ruegeria pomeroyi DSS-3] Length = 204 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 43/72 (59%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +++ FL++ + R+ L+ +E L+ +G T++++A +LG+S +TV +L + Sbjct: 124 KMVFPFLDVRELRADPISTLSRKERLLLEALAEGLTNKQLAARLGISTNTVKFHLSNVFD 183 Query: 215 KLDAVNRIQAIA 226 KL NR QAIA Sbjct: 184 KLSVKNRAQAIA 195 >gi|299065948|emb|CBJ37129.1| putative response regulator (vsrC), LuxR family [Ralstonia solanacearum CMR15] Length = 221 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT R+ S L L +G ++ IA +LGL+ +TV ++ + +L RIQ I++ RF Sbjct: 157 GLTPRQGSVLALLLEGLPNKSIARQLGLTENTVKEHVSAILQRLGVRTRIQIISRMERF 215 >gi|296390495|ref|ZP_06879970.1| transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 243 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 14/156 (8%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFA---GIAFPVRLGFHKNGY---VIFTSEFL 139 P W ++ E +++ R+ G+ G+ PV F +NG V F E L Sbjct: 93 PFFWS----KSPSEDPARMAYRIVRGVRDLGQVNGMQVPV---FGRNGLEGAVSFAGERL 145 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKL 198 L + A C + L SS A+ L+ERE LQ G E+A L Sbjct: 146 DLNAGCKLAAQAFCPILFFALKRLRGPVSSGDAQALSEREREVLQWIALGKQQAEVAAIL 205 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV +L +A +L A + QA+A+A+R G I Sbjct: 206 MISERTVENHLRAARRRLGAASTAQAVARALRLGDI 241 >gi|256396266|ref|YP_003117830.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362492|gb|ACU75989.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 224 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 38/71 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L + + A LT+RE +G +++EIA +L LS TV ++ A VK+ A +R Sbjct: 149 QLDQAQRGALDALTDRERQITGFVAEGLSNDEIAARLVLSPATVKTHVNRAMVKVGARDR 208 Query: 222 IQAIAKAIRFG 232 Q + A R G Sbjct: 209 AQLVVFAHRSG 219 >gi|229028798|ref|ZP_04184901.1| Sensory transduction protein ydfI [Bacillus cereus AH1271] gi|228732508|gb|EEL83387.1| Sensory transduction protein ydfI [Bacillus cereus AH1271] Length = 207 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 NLTE+E L+ G ++EIA +G++ TV AYL + KL +R +A+A +I Sbjct: 144 NLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSI 200 >gi|157059879|dbj|BAF79686.1| putative LuxR family two-component system response regulator [Streptomyces kasugaensis] Length = 217 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L L G+G ++ + +++ +S TV Y+ KL+ NR+QA Sbjct: 155 TLTDRELEVLALLGEGLSNADAGQRIHMSEATVKTYVSRILAKLECENRVQA 206 >gi|78063560|ref|YP_373468.1| two component LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77971445|gb|ABB12824.1| two component transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 216 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 10/75 (13%) Query: 163 LFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L + R AA+ L+ RE L++ G+G T ++IAE++G S +TV A+ + KL Sbjct: 135 LRRARGQAAKPTTPLAALSPREIEILRMIGEGLTKQQIAERIGHSANTVEAHRTNIKRKL 194 Query: 217 DAVNRIQAIAKAIRF 231 N A+ IRF Sbjct: 195 GLDNN----AELIRF 205 >gi|15597787|ref|NP_251281.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|218891329|ref|YP_002440196.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|254235577|ref|ZP_04928900.1| hypothetical protein PACG_01504 [Pseudomonas aeruginosa C3719] gi|254241024|ref|ZP_04934346.1| hypothetical protein PA2G_01705 [Pseudomonas aeruginosa 2192] gi|9948655|gb|AAG05979.1|AE004688_1 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|66957912|gb|AAY59074.1| transcriptional regulatory protein [Pseudomonas sp. M18] gi|126167508|gb|EAZ53019.1| hypothetical protein PACG_01504 [Pseudomonas aeruginosa C3719] gi|126194402|gb|EAZ58465.1| hypothetical protein PA2G_01705 [Pseudomonas aeruginosa 2192] gi|218771555|emb|CAW27323.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 268 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LT RE+ ++L DGY+++EIA++L LS+ T+ + KL+ Sbjct: 202 LTARESDVIRLMLDGYSNKEIADRLTLSIATIKVHRRHIYAKLN 245 >gi|49484607|ref|YP_041831.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|82751986|ref|YP_417727.1| two-component response regulator [Staphylococcus aureus RF122] gi|257423874|ref|ZP_05600303.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257426557|ref|ZP_05602959.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257429193|ref|ZP_05605580.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257431839|ref|ZP_05608202.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257434799|ref|ZP_05610850.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|258425065|ref|ZP_05687936.1| two-component system response regulator [Staphylococcus aureus A9635] gi|282902306|ref|ZP_06310199.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|282906734|ref|ZP_06314582.1| two-component system NarL family response regulator NreC [Staphylococcus aureus subsp. aureus Btn1260] gi|282909710|ref|ZP_06317519.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911956|ref|ZP_06319752.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282915251|ref|ZP_06323028.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282917742|ref|ZP_06325492.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus D139] gi|282920975|ref|ZP_06328693.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C427] gi|282925881|ref|ZP_06333529.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C101] gi|283767476|ref|ZP_06340391.1| two-component system response regulator [Staphylococcus aureus subsp. aureus H19] gi|283959174|ref|ZP_06376615.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|293497647|ref|ZP_06665501.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus 58-424] gi|293511227|ref|ZP_06669923.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus M809] gi|293549835|ref|ZP_06672507.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|295428978|ref|ZP_06821600.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|81696432|sp|Q6GE42|NREC_STAAR RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|123741052|sp|Q2YZ42|NREC_STAAB RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|49242736|emb|CAG41461.1| putative response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|82657517|emb|CAI81959.1| two-component response regulator [Staphylococcus aureus RF122] gi|257272892|gb|EEV04994.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257276188|gb|EEV07639.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257279674|gb|EEV10261.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257282718|gb|EEV12850.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257285395|gb|EEV15511.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257844899|gb|EEV68942.1| two-component system response regulator [Staphylococcus aureus A9635] gi|282312710|gb|EFB43114.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C101] gi|282315390|gb|EFB45774.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C427] gi|282318027|gb|EFB48387.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus D139] gi|282320972|gb|EFB51306.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282323652|gb|EFB53968.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282326284|gb|EFB56588.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329633|gb|EFB59154.1| two-component system NarL family response regulator NreC [Staphylococcus aureus subsp. aureus Btn1260] gi|282596765|gb|EFC01724.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|283461355|gb|EFC08439.1| two-component system response regulator [Staphylococcus aureus subsp. aureus H19] gi|283788766|gb|EFC27593.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|290918882|gb|EFD95958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|291096578|gb|EFE26836.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus 58-424] gi|291465853|gb|EFF08383.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus M809] gi|295126737|gb|EFG56381.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|302334020|gb|ADL24213.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JKD6159] gi|315194884|gb|EFU25272.1| two-component response regulator [Staphylococcus aureus subsp. aureus CGS00] Length = 217 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY ++EIAEKL +SV TV A+ KL ++ + + Sbjct: 149 SDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEY 208 Query: 228 AIR 230 A++ Sbjct: 209 ALK 211 >gi|87306600|ref|ZP_01088747.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] gi|87290779|gb|EAQ82666.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] Length = 210 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ G ++ EI L +S+ TV ++ + K+D +R QA A+R G Sbjct: 150 LTNREMQVLRHLALGLSNREIGRSLTISIETVKEHVQNILRKIDVTDRTQAAVWAVRRGL 209 Query: 234 I 234 + Sbjct: 210 V 210 >gi|324997378|ref|ZP_08118490.1| putative two-component system response regulator [Pseudonocardia sp. P1] Length = 239 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LTERE L L G ++ EIA +L L TV ++ + KLD +R+Q + Sbjct: 166 AGPAGALTERERQVLGLVAAGLSNAEIAARLVLGGTTVKTHVSNLLTKLDLRDRVQLVVF 225 Query: 228 AIRFGYI 234 A G + Sbjct: 226 AYEHGLV 232 >gi|319401681|gb|EFV89890.1| transcriptional regulatory protein degU [Staphylococcus epidermidis FRI909] Length = 218 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209 Query: 228 AIR 230 A++ Sbjct: 210 ALK 212 >gi|302536340|ref|ZP_07288682.1| two-component system DNA-binding response regulator [Streptomyces sp. C] gi|302445235|gb|EFL17051.1| two-component system DNA-binding response regulator [Streptomyces sp. C] Length = 231 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 170 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 218 >gi|196250317|ref|ZP_03149010.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|196210206|gb|EDY04972.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] Length = 552 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L+L G ++ EI+E+L +SVHTV ++ + K+ +R Q IA Sbjct: 480 SEQLTSREMDVLELLVQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIA 535 >gi|254427534|ref|ZP_05041241.1| response regulator receiver domain protein [Alcanivorax sp. DG881] gi|196193703|gb|EDX88662.1| response regulator receiver domain protein [Alcanivorax sp. DG881] Length = 220 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +T R+ LQL GY++++IA L L+ HTV +++ + V L A N + A+ Sbjct: 156 ITRRQYDVLQLMAQGYSNKQIASTLFLTEHTVKSHVSALFVILGASNSTSCVQNAV 211 >gi|182437202|ref|YP_001824921.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777832|ref|ZP_08237097.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178465718|dbj|BAG20238.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658165|gb|EGE43011.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 222 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 11/107 (10%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK--KRSSAAR--NLTER 177 +G+++ + LA+ V + A G ++IT+F +L + + + AR +LTER Sbjct: 103 SGFLLKDASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAEAPRPPALARIGDLTER 162 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ET L L G ++ EIA L ++ T+ ++ VKL +R QA Sbjct: 163 ETEVLVLIAQGLSNAEIASHLIVAESTIKTHVSRILVKLGLRDRTQA 209 >gi|113867311|ref|YP_725800.1| ATP-dependent transcription regulator LuxR [Ralstonia eutropha H16] gi|113526087|emb|CAJ92432.1| ATP-dependent transcriptional regulator,MalT-family [Ralstonia eutropha H16] Length = 947 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 20/54 (37%), Positives = 33/54 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L++RE ++L G G +++IA LGLS TV +L + KL +R +A+A+ Sbjct: 879 LSDREADVVRLLGQGLPNKKIARTLGLSPETVKWHLRNIFRKLGVSSRDEAVAR 932 >gi|17547174|ref|NP_520576.1| response regulator VSRC transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17429476|emb|CAD16162.1| response regulator vsrc transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 221 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT R+ S L L +G ++ IA +LGL+ +TV ++ + +L RIQ I++ Sbjct: 152 TPAELGLTPRQGSVLALLLEGLPNKSIARQLGLTENTVKEHVSAILQRLGVRTRIQIISR 211 Query: 228 AIRF 231 RF Sbjct: 212 MERF 215 >gi|329940013|ref|ZP_08289295.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329300839|gb|EGG44735.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 225 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 34/66 (51%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT RE L L +G +++EIA +L +S TV ++ + K +R QA+ A Sbjct: 157 APDGLTVREVEVLVLIAEGLSNQEIARRLHVSTATVKTHINNMFAKTGLKDRAQAVRYAF 216 Query: 230 RFGYIC 235 R G + Sbjct: 217 RKGLVT 222 >gi|297158992|gb|ADI08704.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 228 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ E+A +L LS TV ++ KL +R+QA+ A G Sbjct: 157 LTPREAEVLRLLAQGLSNAELAARLHLSEATVKTHVARILAKLGLRDRVQAVVVAYETGL 216 Query: 234 IC 235 + Sbjct: 217 VS 218 >gi|294055008|ref|YP_003548666.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293614341|gb|ADE54496.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 238 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 5/93 (5%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK--RSSAARNLTERETSCLQL 184 GY+ + + L + + + G Y +++ EL + + +LT RE +QL Sbjct: 117 GYIEKDAGLVELEKAIALVSEGRSYFSPRIVEAMRELMVNGGQDDSLDSLTTREREIVQL 176 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + Y+++EIA KLG+SV T + + + KL+ Sbjct: 177 IAESYSNKEIAAKLGMSVRTADTHRTNIMKKLN 209 >gi|228985356|ref|ZP_04145515.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774309|gb|EEM22716.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 211 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 38/68 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K++ + LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA Sbjct: 142 KEKENPFSMLTKREKEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQA 201 Query: 225 IAKAIRFG 232 A++ G Sbjct: 202 ALYAVKHG 209 >gi|229154684|ref|ZP_04282799.1| Sensory transduction protein ydfI [Bacillus cereus ATCC 4342] gi|228628632|gb|EEK85344.1| Sensory transduction protein ydfI [Bacillus cereus ATCC 4342] Length = 207 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 34/57 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 NLTE+E L+ G ++EIA +G++ TV AYL + KL +R +A+A +I Sbjct: 144 NLTEKELFVLKAIARGNKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSI 200 >gi|218675965|ref|YP_002394784.1| transcriptional regulator MalT [Vibrio splendidus LGP32] gi|218324233|emb|CAV25502.1| HTH-type transcriptional regulator malT (ATP-dependent transcriptional activator malT) [Vibrio splendidus LGP32] Length = 907 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 35/55 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI+ A Sbjct: 844 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAISTA 898 >gi|254432209|ref|ZP_05045912.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp. PCC 7001] gi|197626662|gb|EDY39221.1| regulatory protein, LuxR:Response regulator receiver [Cyanobium sp. PCC 7001] Length = 273 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 2/71 (2%) Query: 166 KRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ + + +L T RE S LQL +G ++EIA +L S+ V Y+ +K +R + Sbjct: 202 KKPAGSTDLVFTPREASVLQLVAEGLMNKEIARRLETSIRNVEKYVSRLFIKTGTASRTE 261 Query: 224 AIAKAIRFGYI 234 + A+ G + Sbjct: 262 LVRYALEHGLV 272 >gi|194476803|ref|YP_002048982.1| two component transcriptional regulator, LuxR family protein [Paulinella chromatophora] gi|171191810|gb|ACB42772.1| two component transcriptional regulator, LuxR family protein [Paulinella chromatophora] Length = 254 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + T RE S LQL +G ++EIA +L S+ V Y+ VK +R + + A+ Sbjct: 192 DFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFVKTTTSSRTELVRYALEHS 251 Query: 233 YI 234 + Sbjct: 252 LV 253 >gi|119898749|ref|YP_933962.1| LuxR family transcriptional regulator [Azoarcus sp. BH72] gi|119671162|emb|CAL95075.1| putative transcriptional regulator, LuxR family [Azoarcus sp. BH72] Length = 173 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 29/48 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE +Q A GY +++IA++L +S TV +YL S KL +R Sbjct: 107 LTSRELQVVQFACMGYLTKQIADRLHISEFTVRSYLKSVYAKLGVRSR 154 >gi|119485648|ref|ZP_01619923.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119456973|gb|EAW38100.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 226 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 37/62 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA+ LT+RE L L G +++EIA+ L ++ TV ++ + KL+A +R QA A Sbjct: 155 SASNPLTKREQEILALIASGKSNQEIADILYIAPGTVRVHVHTILKKLNARDRTQAALVA 214 Query: 229 IR 230 I+ Sbjct: 215 IQ 216 >gi|119387463|ref|YP_918497.1| two component LuxR family transcriptional regulator [Paracoccus denitrificans PD1222] gi|119378038|gb|ABL72801.1| two component transcriptional regulator, LuxR family [Paracoccus denitrificans PD1222] Length = 160 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 30/60 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L L G G + IA +L +S HTV+ Y+ KL NR A AI G Sbjct: 92 HLSRREEQVLSLLGQGERTGAIASRLEISEHTVSHYIKELYRKLGINNRADAARMAISLG 151 >gi|152967380|ref|YP_001363164.1| regulatory protein LuxR [Kineococcus radiotolerans SRS30216] gi|151361897|gb|ABS04900.1| regulatory protein LuxR [Kineococcus radiotolerans SRS30216] Length = 955 Score = 37.4 bits (85), Expect = 1.6, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT E + AG G T+ IAE+LG+S HTV+ +L + KL +R+Q Sbjct: 887 LTGAERRVAERAGRGGTNRSIAEELGVSPHTVSTHLRAVFGKLGINSRVQ 936 >gi|319779891|ref|YP_004139367.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165779|gb|ADV09317.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 517 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 31/53 (58%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 K +++ LT RE+ + L DG ++ IA +L LS HTV ++ + +KLD Sbjct: 445 KPKTAEPAALTARESEVVNLVADGKSNAAIAAELRLSEHTVKRHVANILLKLD 497 >gi|307826600|ref|ZP_07656720.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] gi|307732395|gb|EFO03310.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] Length = 171 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Query: 155 QVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 Q+I +L++ K ++ NLT RE L+L GY ++EIA+ L +S+ TV + + Sbjct: 6 QIINGYLKVEKSCLDNNLNWNLTSREAQLLKLIAAGYKNKEIADSLCISLKTVETHRATL 65 Query: 213 TVKLDAVN 220 K +A N Sbjct: 66 MRKFNAHN 73 >gi|259502947|ref|ZP_05745849.1| LuxR family DNA-binding response regulator [Lactobacillus antri DSM 16041] gi|259169072|gb|EEW53567.1| LuxR family DNA-binding response regulator [Lactobacillus antri DSM 16041] Length = 217 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L GY++ EI+EKL +S TV A+ + + KL +R++ + AI Sbjct: 155 LSKREKEVFPLVALGYSNREISEKLFISTKTVEAHKANISRKLHLHSRVELVRYAIHHHL 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|253686983|ref|YP_003016173.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753561|gb|ACT11637.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 204 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 33/57 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +S L+ER+ LQL G ++++I+ L +S TV ++L S +L+ NR QA Sbjct: 138 NSVKGKLSERQHEVLQLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQA 194 >gi|291299547|ref|YP_003510825.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568767|gb|ADD41732.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 9/112 (8%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR--NLTERETS 180 G+++ +E L + V + A G +++ DF + R LTERET Sbjct: 102 GFLVKDTEPAELIHAVRVVARGDALIAPTITRRLLADFATQHRAPQPNPRLNALTERETE 161 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L G +++EIA KL LS T ++ KL A +R Q + A G Sbjct: 162 VLGLIAAGLSNDEIAAKLFLSPATSKTHVSRIMSKLGARDRAQLVILAYESG 213 >gi|222150392|ref|YP_002559545.1| two-component response regulator NreC [Macrococcus caseolyticus JCSC5402] gi|222119514|dbj|BAH16849.1| two-component response regulator NreC [Macrococcus caseolyticus JCSC5402] Length = 216 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + ++ + LT+RE L L GY ++EIAE L +SV TV A+ KL+ ++ + Sbjct: 144 YSAKNDHLKILTKRELEILPLIAKGYGNKEIAEMLYVSVKTVEAHKARIMDKLELKSKPE 203 Query: 224 AIAKAIR 230 + A++ Sbjct: 204 LVEYALK 210 >gi|219684531|ref|ZP_03539474.1| hypothetical protein BGAPBR_0164 [Borrelia garinii PBr] gi|219671893|gb|EED28947.1| hypothetical protein BGAPBR_0164 [Borrelia garinii PBr] Length = 614 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 42 LDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS 101 + FP ++Q+I L DL S ++ IL+ TY + F +FN L I S+Q++ +E S Sbjct: 210 ISFPFKKQIIRIL---DLSSKNVEKILVRTYDNHFYSYFNEQWLFIGKLSLQDQGFVEKS 266 Query: 102 GQLSVRLEGG 111 ++ + G Sbjct: 267 QRMQLAKNKG 276 >gi|51598425|ref|YP_072613.1| hypothetical protein BG0163 [Borrelia garinii PBi] gi|51572996|gb|AAU07021.1| hypothetical protein BG0163 [Borrelia garinii PBi] Length = 614 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 42 LDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS 101 + FP ++Q++ L DL S ++ IL+ TY + F +FN L I S+Q++ +E S Sbjct: 210 ISFPFKKQIVRIL---DLSSKNVKKILVRTYDNHFYSYFNEQWLFIGKLSLQDQDFVEKS 266 Query: 102 GQLSVRLEGG 111 ++ + G Sbjct: 267 QRMQLAKNKG 276 >gi|85375284|ref|YP_459346.1| hypothetical protein ELI_12285 [Erythrobacter litoralis HTCC2594] gi|84788367|gb|ABC64549.1| hypothetical protein ELI_12285 [Erythrobacter litoralis HTCC2594] Length = 260 Score = 37.4 bits (85), Expect = 1.6, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 33/58 (56%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R A +LTE+E L+L G+ ++ A +L LSVHTVN L +A KL + +A Sbjct: 12 REDALASLTEKERETLRLIVRGHGAKSAANELDLSVHTVNERLRAARRKLSVTSSREA 69 >gi|330505034|ref|YP_004381903.1| response regulator receiver protein [Pseudomonas mendocina NK-01] gi|328919320|gb|AEB60151.1| response regulator receiver protein [Pseudomonas mendocina NK-01] Length = 210 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L GYT+ E+AE+L +SV TV+ Y ++ A + + AI G Sbjct: 140 QLTPRERDVLLPLVRGYTNREVAEQLDISVKTVDLYRSRVMKRMQAETLPELVGMAIAAG 199 Query: 233 YI 234 + Sbjct: 200 LV 201 >gi|302035963|ref|YP_003796285.1| LuxR family transcriptional regulator [Candidatus Nitrospira defluvii] gi|300604027|emb|CBK40359.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 218 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 29/53 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ +E L L G T++EIA +LGLS TV YL + KL R QA A Sbjct: 159 LSPQERRLLPLIAQGKTNKEIAAELGLSDKTVKNYLANVYSKLHLSRRSQAAA 211 >gi|300311949|ref|YP_003776041.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074734|gb|ADJ64133.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 318 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 28/52 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE+ L G G T+ +IA+ LG+S TVN +L VKL R A Sbjct: 258 RLTPRESDVLLWLGKGKTNRDIADILGMSPRTVNKHLEHIFVKLGVETRSAA 309 >gi|296388940|ref|ZP_06878415.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 268 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 29/44 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LT RE+ ++L DGY+++EIA++L LS+ T+ + KL+ Sbjct: 202 LTARESDVIRLMLDGYSNKEIADRLTLSIATIKVHRRHIYAKLN 245 >gi|242237587|ref|YP_002985768.1| LuxR family transcriptional regulator [Dickeya dadantii Ech703] gi|242129644|gb|ACS83946.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech703] Length = 236 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%) Query: 160 FLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + EL + R + ++ +ERE L A G T +EIA LG+ TV ++G+ KL Sbjct: 157 YRELAESRQHRSNDMLFSERENDILYWASMGKTYQEIALILGIKTSTVKFHIGNVVRKLG 216 Query: 218 AVNRIQAIAKAIRFGYI 234 N AI I I Sbjct: 217 VTNAKHAIRMGIEMNLI 233 >gi|238064526|ref|ZP_04609235.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237886337|gb|EEP75165.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 229 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G ++ EIA +L +S TV ++G KL +R+QA+ A G Sbjct: 165 LTEREREVLVQVARGLSNAEIARELTVSETTVKTHVGHVLTKLGLRDRVQAVVFAYESGL 224 Query: 234 I 234 + Sbjct: 225 V 225 >gi|189463679|ref|ZP_03012464.1| hypothetical protein BACINT_00010 [Bacteroides intestinalis DSM 17393] gi|189438629|gb|EDV07614.1| hypothetical protein BACINT_00010 [Bacteroides intestinalis DSM 17393] Length = 217 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 11/93 (11%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNL------TERETSCLQLAGDGYTSEEIAEKLGLS 201 EAH AC + F + +K +SA+ L T RE L+ G + EIA+ L +S Sbjct: 127 EAH-ACPR----FAAISQKLNSASAGLQPKDAPTRRERDVLEAVAKGMNTHEIADLLKIS 181 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +TV + K A N I + KA+ G+I Sbjct: 182 ENTVETFRKRLISKFGAKNAIDMVVKAVAQGWI 214 >gi|171058058|ref|YP_001790407.1| LuxR family transcriptional regulator [Leptothrix cholodnii SP-6] gi|170775503|gb|ACB33642.1| transcriptional regulator, LuxR family [Leptothrix cholodnii SP-6] Length = 267 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +T RE L+ G ++ EI + LG+S TV ++ KL+ VNR QA+ +AI Sbjct: 205 ITVREQEILKWIYLGKSNSEIGQILGISALTVKNHVQKMLHKLNVVNRAQAVGRAI 260 >gi|297158191|gb|ADI07903.1| two-component system DNA-binding response regulator [Streptomyces bingchenggensis BCW-1] Length = 243 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 182 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 230 >gi|302526798|ref|ZP_07279140.1| predicted protein [Streptomyces sp. AA4] gi|302435693|gb|EFL07509.1| predicted protein [Streptomyces sp. AA4] Length = 845 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 29/53 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 S R L+ RE ++ G T++EIA +L LS TV+A++ KLD R Sbjct: 784 SGGRTLSRRERQVAEMVVRGLTTKEIAAELFLSPRTVDAHVARVLNKLDLSTR 836 >gi|229490955|ref|ZP_04384788.1| two-component system response regulator [Rhodococcus erythropolis SK121] gi|229322071|gb|EEN87859.1| two-component system response regulator [Rhodococcus erythropolis SK121] Length = 212 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT+RE+ L L +G +++EIAE L L V TV ++ + K NR++ Sbjct: 153 LTDRESQVLALVAEGKSNQEIAETLHLGVTTVKTHVANLMSKTGCDNRVR 202 >gi|190890234|ref|YP_001976776.1| two-component response regulator protein [Rhizobium etli CIAT 652] gi|190695513|gb|ACE89598.1| probable two-component response regulator protein [Rhizobium etli CIAT 652] Length = 215 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 3/62 (4%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +++ L + +G +++IA +LG+S T+ A++ + +KLD +R QA+ I+ G Sbjct: 151 TLTPQQSRVLTMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLDVDSRTQAV---IQLG 207 Query: 233 YI 234 I Sbjct: 208 KI 209 >gi|124024406|ref|YP_001018713.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] gi|123964692|gb|ABM79448.1| two-component response regulator [Prochlorococcus marinus str. MIT 9303] Length = 233 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + A N T RE S LQL +G ++EIA +L S+ V Y+ +K +R + + Sbjct: 165 KDVALHNFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVR 224 Query: 227 KAI 229 A+ Sbjct: 225 YAL 227 >gi|94311812|ref|YP_585022.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93355664|gb|ABF09753.1| Response regulator VsrC transcription regulator protein NarL-family [Cupriavidus metallidurans CH34] Length = 219 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 36/64 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT R+ S L L +G ++ IA KLGL+ +TV ++ + +L R+Q +++ Sbjct: 152 TPAELGLTPRQGSVLALVLEGLPNKVIARKLGLTENTVKEHVSAILQRLGVRTRMQVMSR 211 Query: 228 AIRF 231 RF Sbjct: 212 MERF 215 >gi|300690680|ref|YP_003751675.1| response regulator (vsrC), LuxR family [Ralstonia solanacearum PSI07] gi|299077740|emb|CBJ50378.1| putative response regulator (vsrC), LuxR family [Ralstonia solanacearum PSI07] Length = 221 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT R+ S L L +G ++ IA +LGL+ +TV ++ + +L RIQ I++ Sbjct: 152 TPAELGLTPRQGSVLALLLEGLPNKSIARQLGLTENTVKEHVSAILQRLGVRTRIQIISR 211 Query: 228 AIRF 231 RF Sbjct: 212 MERF 215 >gi|291003996|ref|ZP_06561969.1| protein kinase/LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 755 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 3/63 (4%) Query: 167 RSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R+ AAR+ LT RE +L G +++EIA +L ++ TV+A++ KL +RIQ Sbjct: 680 RAGAARSSSPLTRREREIAELVTQGLSNKEIASRLVIAKRTVDAHVEHIFTKLGLNSRIQ 739 Query: 224 AIA 226 A Sbjct: 740 VAA 742 >gi|317054459|ref|YP_004118484.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] gi|316952454|gb|ADU71928.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 243 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 6/91 (6%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 V+I+ H V ++ E+ + SA RE+ L GYT ++AE L ++V T Sbjct: 150 VLIDTHEMLLSVYSEGEEVKEDVFSA------RESEILYWCSKGYTYSQVAEMLNITVST 203 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + ++G K+ N AI+ I I Sbjct: 204 IKFHMGKVVKKMGVKNAKHAISLGIELKMIS 234 >gi|255036046|ref|YP_003086667.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254948802|gb|ACT93502.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 214 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT+RE L +++ EIA+KL LS +TV Y S KL A N IA + F Sbjct: 153 NLTKREVDILTEVAREFSTAEIADKLCLSEYTVETYRKSIIRKLAAKN----IASLVNFA 208 Query: 233 Y 233 + Sbjct: 209 H 209 >gi|182413518|ref|YP_001818584.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840732|gb|ACB74984.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 213 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 35/68 (51%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S +++T RE LQLA +G ++ EIAEKL +S T + + KL + + Sbjct: 145 SDPLQSITPRERMVLQLAAEGASNSEIAEKLFISPRTAETHRTNLLRKLGLQTQTDLVRF 204 Query: 228 AIRFGYIC 235 AIR G I Sbjct: 205 AIRKGLIS 212 >gi|217959776|ref|YP_002338328.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187] gi|229138969|ref|ZP_04267547.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|217064042|gb|ACJ78292.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187] gi|228644509|gb|EEL00763.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 209 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 37/67 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K+ + LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA Sbjct: 141 KKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAA 200 Query: 226 AKAIRFG 232 A++ G Sbjct: 201 LYAVKHG 207 >gi|148974067|ref|ZP_01811600.1| transcriptional regulator MalT [Vibrionales bacterium SWAT-3] gi|145965764|gb|EDK31012.1| transcriptional regulator MalT [Vibrionales bacterium SWAT-3] Length = 902 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 35/55 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAISTA 893 >gi|134101186|ref|YP_001106847.1| protein kinase/LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133913809|emb|CAM03922.1| protein kinase/transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] Length = 749 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 3/63 (4%) Query: 167 RSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R+ AAR+ LT RE +L G +++EIA +L ++ TV+A++ KL +RIQ Sbjct: 674 RAGAARSSSPLTRREREIAELVTQGLSNKEIASRLVIAKRTVDAHVEHIFTKLGLNSRIQ 733 Query: 224 AIA 226 A Sbjct: 734 VAA 736 >gi|150376321|ref|YP_001312917.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150030868|gb|ABR62984.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 309 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 28/55 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE+ L G ++ +I E LGLS TV +L VKL NR A KA Sbjct: 248 LTPRESEVLLWIAKGKSNRDIGEILGLSSRTVTKHLEQIYVKLGVENRASAAVKA 302 >gi|47565618|ref|ZP_00236658.1| MW1789 [Bacillus cereus G9241] gi|47557254|gb|EAL15582.1| MW1789 [Bacillus cereus G9241] Length = 211 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 38/68 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K++ + LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA Sbjct: 142 KEKENPFSMLTKREQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQA 201 Query: 225 IAKAIRFG 232 A++ G Sbjct: 202 ALYAVKHG 209 >gi|317491518|ref|ZP_07949954.1| autoinducer binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921065|gb|EFV42388.1| autoinducer binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 246 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 29/62 (46%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L A G T EIA +G+SV TV ++G+ KL N QAI + Sbjct: 181 FTAREHEVLYWASMGKTYAEIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVELEL 240 Query: 234 IC 235 I Sbjct: 241 IT 242 >gi|302866747|ref|YP_003835384.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302569606|gb|ADL45808.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 225 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 35/70 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + +A +LT RE L+L G ++ EIA+ L + TV ++ KL +R+QA Sbjct: 152 PRHDAATADLTPREREVLELVARGASNAEIADVLHVGEATVKTHVSRVLAKLGLRDRVQA 211 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 212 VVFAYEHGVV 221 >gi|284993172|ref|YP_003411727.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066418|gb|ADB77356.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 218 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTE+E + L+L G+G T+ +I ++GL+ TV Y KL R QA Sbjct: 156 LTEQERTVLRLIGEGLTNRQIGARMGLAEKTVKNYTSHLLAKLGLERRTQA 206 >gi|254822327|ref|ZP_05227328.1| regulatory protein, LuxR [Mycobacterium intracellulare ATCC 13950] Length = 879 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%) Query: 162 ELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 E +KR++ LT +ET +LA DG ++ EI +L +S TV +L KLD Sbjct: 803 ETARKRTAGVDGEKLTAQETQVARLARDGLSNPEIGARLFISPRTVQYHLRKVFTKLDIS 862 Query: 220 NRIQ 223 +R Q Sbjct: 863 SRSQ 866 >gi|261408559|ref|YP_003244800.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. Y412MC10] gi|261285022|gb|ACX66993.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Paenibacillus sp. Y412MC10] Length = 902 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L G ++ +I+EKL +++ TV + KL A R +A+A+A G Sbjct: 842 LSRRELEVLRLIAQGLSNRQISEKLFVALSTVKGHNRIIFDKLQATRRTEAVARARELGL 901 Query: 234 I 234 + Sbjct: 902 L 902 >gi|168702398|ref|ZP_02734675.1| two-component transcriptional regulator, LuxR family protein [Gemmata obscuriglobus UQM 2246] Length = 216 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 2/114 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 LG GYV+ +S + V A G Y I R + L ERE + Sbjct: 90 LGMGVRGYVLKSSSTENVEEAVRTIAAGGRYFSPGIIGHSSGEGPRGPSGMALVEREVTV 149 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L GY+++EI+ KL SV +V + A +L+ +R+ + A G++ Sbjct: 150 LVLVARGYSNKEISVKLMCSVKSVEIHKRRAMRRLELRSRVDLVHMAAAHGWLA 203 >gi|134287108|dbj|BAF50712.1| putative two component regulator [Streptomyces virginiae] Length = 277 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE+ L L G ++ EIA L LS HTV +++ + KL +R+QA+ A G Sbjct: 214 LTARESEVLDLIARGLSNAEIAGALMLSEHTVKSHVQNLLGKLRLRSRVQAVVYAYEIG 272 >gi|89891291|ref|ZP_01202798.1| putative response regulator, luxR family [Flavobacteria bacterium BBFL7] gi|89516603|gb|EAS19263.1| putative response regulator, luxR family [Flavobacteria bacterium BBFL7] Length = 218 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 166 KRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KRS+ NL + RE LQL + +T+ EIA+KL +S TV+ + + +K N Sbjct: 145 KRSTLDHNLLSPRELDVLQLICEQFTTAEIADKLCVSKRTVDGHRNNLLIKTKMRNVAGL 204 Query: 225 IAKAIRFGYI 234 +A AI+ I Sbjct: 205 VAYAIQNAII 214 >gi|86144605|ref|ZP_01062937.1| transcriptional regulator MalT [Vibrio sp. MED222] gi|85837504|gb|EAQ55616.1| transcriptional regulator MalT [Vibrio sp. MED222] Length = 902 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 35/55 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAISTA 893 >gi|83746248|ref|ZP_00943301.1| Hypothetical Protein RRSL_03835 [Ralstonia solanacearum UW551] gi|207721450|ref|YP_002251891.1| response regulator vsrc protein [Ralstonia solanacearum MolK2] gi|207723588|ref|YP_002253987.1| response regulator vsrc protein [Ralstonia solanacearum MolK2] gi|207742569|ref|YP_002258961.1| response regulator vsrc protein [Ralstonia solanacearum IPO1609] gi|300703298|ref|YP_003744900.1| response regulator (vsrc), luxr family [Ralstonia solanacearum CFBP2957] gi|83726998|gb|EAP74123.1| Hypothetical Protein RRSL_03835 [Ralstonia solanacearum UW551] gi|206586610|emb|CAQ17197.1| response regulator vsrc protein [Ralstonia solanacearum MolK2] gi|206588790|emb|CAQ35753.1| response regulator vsrc protein [Ralstonia solanacearum MolK2] gi|206593962|emb|CAQ60889.1| response regulator vsrc protein [Ralstonia solanacearum IPO1609] gi|299070961|emb|CBJ42269.1| putative response regulator (vsrC), LuxR family [Ralstonia solanacearum CFBP2957] Length = 221 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT R+ S L L +G ++ IA +LGL+ +TV ++ + +L RIQ I++ Sbjct: 152 TPAELGLTPRQGSVLALLLEGLPNKSIARQLGLTENTVKEHVSAILQRLGVRTRIQIISR 211 Query: 228 AIRF 231 RF Sbjct: 212 MERF 215 >gi|302381790|ref|YP_003817613.1| LuxR family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192418|gb|ADK99989.1| two component transcriptional regulator, LuxR family [Brevundimonas subvibrioides ATCC 15264] Length = 208 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 29/58 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+ G T++EIA LG+ TV A++ KL +R QA A R Sbjct: 148 RLTPREREVLESVARGLTNKEIARDLGIGPGTVKAHVEKLIAKLGVADRTQAAVFAAR 205 >gi|146308469|ref|YP_001188934.1| putative PAS/PAC sensor protein [Pseudomonas mendocina ymp] gi|145576670|gb|ABP86202.1| putative PAS/PAC sensor protein [Pseudomonas mendocina ymp] Length = 221 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LTERE L L G G ++++IA +LG+S TV Y+ S K +R++ + Sbjct: 16 AWEELTEREGQTLALIGAGLSNKQIARELGISDGTVKIYVRSLLRKFRLSSRLELATRLH 75 Query: 230 RFG 232 R G Sbjct: 76 RRG 78 >gi|91780463|ref|YP_555670.1| LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91693123|gb|ABE36320.1| transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 262 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 32/65 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AAR LT + CL G TS EI E LG S +TV+ ++ A L+ R A +A Sbjct: 196 AARLLTPCQIVCLTWVARGKTSAEIGEILGCSHYTVDYHVKKAMEALNIWGRTAAAVQAT 255 Query: 230 RFGYI 234 G I Sbjct: 256 VQGLI 260 >gi|28871830|ref|NP_794449.1| DNA-binding response regulator CorR [Pseudomonas syringae pv. tomato str. DC3000] gi|28855083|gb|AAO58144.1| DNA-binding response regulator CorR [Pseudomonas syringae pv. tomato str. DC3000] Length = 199 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S LT R+ L L G T++EIA +L S HTV +++ + L A R +A Sbjct: 132 ASTPLTLTSRQRQVLGLLCQGLTNKEIASQLWRSEHTVRSHVQAILTILQASCRTEAADT 191 Query: 228 AIRFGYI 234 A R G + Sbjct: 192 ARRLGLV 198 >gi|27468887|ref|NP_765524.1| response regulators of two-component regulatory [Staphylococcus epidermidis ATCC 12228] gi|81842572|sp|Q8CN75|NREC_STAES RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|27316435|gb|AAO05610.1|AE016750_215 response regulators of two-component regulatory [Staphylococcus epidermidis ATCC 12228] Length = 218 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209 Query: 228 AIR 230 A++ Sbjct: 210 ALK 212 >gi|22298806|ref|NP_682053.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294987|dbj|BAC08815.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 226 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE S LQL G ++EIA +L SV + Y+ VK +R + + A+ G Sbjct: 164 DLTPREASVLQLVVKGLMNKEIASQLNTSVRNIEKYVSRLFVKTGTSSRTELVRFALEHG 223 >gi|108805597|ref|YP_645534.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766840|gb|ABG05722.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 219 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 11/94 (11%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 +A V+ E HGA F EL ++RE L+L +G ++ EIA +L + Sbjct: 132 VAARVVRELHGARRAEPNVFQEL-----------SDREMEVLKLIAEGLSNAEIAARLYV 180 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV +++ + KL +R QA A R G + Sbjct: 181 SEKTVKSHVSNILGKLHLADRTQAAVYAWREGVV 214 >gi|332709752|ref|ZP_08429711.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332351579|gb|EGJ31160.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 89 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 37/69 (53%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +S L+ RE ++ G T+ EIA++L +S TV+ ++ + K NR+ + Sbjct: 5 KSQNHATLSYRELQIIEHVAAGLTNLEIAQELAISKRTVDNHISNILTKTSTDNRVGLVR 64 Query: 227 KAIRFGYIC 235 A+++G +C Sbjct: 65 WALKWGKVC 73 >gi|312132943|ref|YP_004000282.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|311773923|gb|ADQ03411.1| Putative response regulator [Bifidobacterium longum subsp. longum BBMN68] Length = 248 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ Sbjct: 188 LTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAV 239 >gi|229085213|ref|ZP_04217456.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228698080|gb|EEL50822.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 211 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/85 (24%), Positives = 43/85 (50%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H + L + +++ + LT+RE L+ G +++EIA +L ++ TV ++ Sbjct: 127 HPKVTPALLGILSVKEEKQDSFSMLTKREKEVLREITKGRSNKEIAAELHITEQTVKTHV 186 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ +R QA A++ G + Sbjct: 187 SNVLAKLEVDDRTQAALYAVKNGVV 211 >gi|184200079|ref|YP_001854286.1| NarL family two-component response regulator [Kocuria rhizophila DC2201] gi|183580309|dbj|BAG28780.1| putative NarL family two-component response regulator [Kocuria rhizophila DC2201] Length = 252 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+ E LQ G + EIAE++ +S +V +Y+ KL +R+Q + I++G Sbjct: 178 KLTDCEQETLQWIAKGLNNAEIAERMSVSHGSVKSYVSHLCEKLAVRDRVQVLISGIQWG 237 Query: 233 YI 234 + Sbjct: 238 LV 239 >gi|254291301|ref|ZP_04962095.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] gi|150422757|gb|EDN14710.1| transcriptional regulator, LuxR family [Vibrio cholerae AM-19226] Length = 214 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 A +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 150 QATVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 >gi|16077609|ref|NP_388423.1| two-component response regulator YdfH [Bacillus subtilis subsp. subtilis str. 168] gi|221308372|ref|ZP_03590219.1| hypothetical protein Bsubs1_03053 [Bacillus subtilis subsp. subtilis str. 168] gi|221312693|ref|ZP_03594498.1| hypothetical protein BsubsN3_03024 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317617|ref|ZP_03598911.1| hypothetical protein BsubsJ_02988 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321893|ref|ZP_03603187.1| hypothetical protein BsubsS_03059 [Bacillus subtilis subsp. subtilis str. SMY] gi|321314195|ref|YP_004206482.1| two-component response regulator YdfH [Bacillus subtilis BSn5] gi|68566110|sp|P96686|YDFI_BACSU RecName: Full=Transcriptional regulatory protein ydfI gi|1881349|dbj|BAA19376.1| ydfI [Bacillus subtilis] gi|2632842|emb|CAB12349.1| two-component response regulator [YdfH] [Bacillus subtilis subsp. subtilis str. 168] gi|320020469|gb|ADV95455.1| two-component response regulator (YdfH) [Bacillus subtilis BSn5] Length = 213 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 36/70 (51%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K+ LTE+E L+ G S+ IA LG+S TV + L S KL A +R +A+ Sbjct: 141 KKQRNETQLTEKEVIVLKAIAKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAV 200 Query: 226 AKAIRFGYIC 235 A++ G + Sbjct: 201 TIAMQKGILT 210 >gi|294638129|ref|ZP_06716385.1| maltose regulon activator MalT [Edwardsiella tarda ATCC 23685] gi|291088696|gb|EFE21257.1| maltose regulon activator MalT [Edwardsiella tarda ATCC 23685] Length = 856 Score = 37.4 bits (85), Expect = 1.7, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L GY++E+IA++L ++ T+ ++ + KL +R +A+ +A Sbjct: 791 LTQREWQVLGLIYSGYSNEQIADELAVAATTIKTHIRNLYQKLGVTHRQEAVRQA 845 >gi|282853975|ref|ZP_06263312.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282583428|gb|EFB88808.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314923372|gb|EFS87203.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314966719|gb|EFT10818.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981049|gb|EFT25143.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315093364|gb|EFT65340.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|327327545|gb|EGE69321.1| nitrate/nitrite response regulator protein NarL [Propionibacterium acnes HL103PA1] Length = 210 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 37/72 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +LT RE L+ + G ++ +IAE L +S TV +L KL +R Sbjct: 138 LMVRMRSPRTSLTAREFDVLEASAQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRS 197 Query: 223 QAIAKAIRFGYI 234 A+AKA G+I Sbjct: 198 AAVAKARDIGFI 209 >gi|257067005|ref|YP_003153261.1| two component transcriptional regulator, LuxR family [Anaerococcus prevotii DSM 20548] gi|256798885|gb|ACV29540.1| two component transcriptional regulator, LuxR family [Anaerococcus prevotii DSM 20548] Length = 198 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ G ++IA+KL +S T+ ++ + KL A N ++A KA+ GY Sbjct: 134 LTNRELEVLEELIKGSRKKDIAQKLYISERTLYNHIANIYEKLGAKNIVEAYNKAMELGY 193 Query: 234 I 234 I Sbjct: 194 I 194 >gi|284028795|ref|YP_003378726.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808088|gb|ADB29927.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 200 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L+L +GY+ +IA +L L+ TV YL +A K A +R +A Sbjct: 140 LTDRELDALRLTSEGYSVADIATRLFLAEGTVRNYLSNAMRKTQAKSRHEA 190 >gi|218460493|ref|ZP_03500584.1| probable two-component response regulator protein [Rhizobium etli Kim 5] Length = 215 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 3/62 (4%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +++ L + +G +++IA +LG+S T+ A++ + +KLD +R QA+ I+ G Sbjct: 151 TLTPQQSRVLTMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLDVDSRTQAV---IQLG 207 Query: 233 YI 234 I Sbjct: 208 KI 209 >gi|188496895|dbj|BAG32345.1| putative response regulator [Streptomyces kasugaensis] Length = 217 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L L G+G ++ + +++ +S TV Y+ KL+ NR+QA Sbjct: 155 TLTDRELEVLALLGEGLSNADAGQRIHMSEATVKTYVSRILAKLECENRVQA 206 >gi|223937115|ref|ZP_03629022.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894137|gb|EEF60591.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 207 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S +L+ RE + L G T + IA LG+S+ T+ +L KL +R +A+AK Sbjct: 144 SPTEAHLSPREQNVLDCLAKGMTYKAIACDLGISIETIRTHLKRVYQKLHVQSRTEAVAK 203 Query: 228 AIR 230 +R Sbjct: 204 YMR 206 >gi|171911323|ref|ZP_02926793.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 242 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+L G+T ++ A ++G+ +T + Y+ S KL +R AIAKA++ Sbjct: 181 GLTPRELQILELLVQGHTIKQAAGEMGIGYYTADEYIRSVYEKLQVRSRGGAIAKAVK 238 >gi|111222400|ref|YP_713194.1| putative sensory transduction protein [Frankia alni ACN14a] gi|111149932|emb|CAJ61626.1| Hypothetical sensory transduction protein [Frankia alni ACN14a] Length = 232 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G+++ EIA L LS TV ++G KL+ +R+QA+ A G Sbjct: 158 RLTDRELVVLGEVAAGHSNAEIAAHLVLSEATVKTHVGRILAKLELRDRVQAVVFAYETG 217 Query: 233 YI 234 + Sbjct: 218 LV 219 >gi|119944945|ref|YP_942625.1| transcriptional regulator of LuxR family protein [Psychromonas ingrahamii 37] gi|119863549|gb|ABM03026.1| transcriptional regulator of LuxR family protein [Psychromonas ingrahamii 37] Length = 214 Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + + G +I+E+LGLS T+N+Y KLD + AIR+G Sbjct: 149 LSERELQIMMMITKGQRVVDISEQLGLSPKTINSYRYRLFDKLDVKGDVGLTHLAIRYGM 208 Query: 234 I 234 + Sbjct: 209 L 209 >gi|308049926|ref|YP_003913492.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307632116|gb|ADN76418.1| two component transcriptional regulator, LuxR family [Ferrimonas balearica DSM 9799] Length = 213 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 35/74 (47%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L+ F + +L+ERE + G EI+E+L LS TVN+Y KL Sbjct: 135 LKPFNPEKNPFDDLSERELQITMMVTSGQKVSEISEQLNLSPKTVNSYRYRLFEKLKISG 194 Query: 221 RIQAIAKAIRFGYI 234 ++ AIR+G + Sbjct: 195 DVELTRLAIRYGMV 208 >gi|239816522|ref|YP_002945432.1| LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803099|gb|ACS20166.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 1022 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S++ L+ RE + L+L G +++ IAE+L +S HTV ++ K D +R +A A Sbjct: 950 SASPEGLSRRELAVLRLLCAGCSNQAIAERLFISPHTVAHHVRHILSKTDCRSRTEAAAW 1009 Query: 228 AIR 230 A R Sbjct: 1010 AHR 1012 >gi|256392805|ref|YP_003114369.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359031|gb|ACU72528.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 925 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 30/59 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K + AA LT +E LA G T+ EIA +L ++ TV +L KLD +R Q Sbjct: 855 KHTAPAAHPLTPQEKQVASLAATGSTNTEIATRLFITTSTVEYHLNKVFRKLDITSRRQ 913 >gi|224368539|ref|YP_002602702.1| two component transcriptional regulator (LuxR family protein) [Desulfobacterium autotrophicum HRM2] gi|223691255|gb|ACN14538.1| two component transcriptional regulator (LuxR family protein) [Desulfobacterium autotrophicum HRM2] Length = 217 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 8/113 (7%) Query: 129 NGYVIF--TSEFLMLANEVIIEAHGACYQVIT----DFLELFKKRSSA--ARNLTERETS 180 NGY++ T ++ A + I+E + T D L K S+ L+ RE Sbjct: 101 NGYLLKEDTDTEILTAMDTILEGKAFLSSIFTKDMPDILTDMVKNGSSFPGGTLSPREEE 160 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L +G ++++IA+ L +S TV + S +LD I AIR GY Sbjct: 161 VLTLLAEGKSNKKIADILCISTRTVEHHRASIMKRLDLRTLADLIKYAIRHGY 213 >gi|222106283|ref|YP_002547074.1| two component response regulator [Agrobacterium vitis S4] gi|221737462|gb|ACM38358.1| two component response regulator [Agrobacterium vitis S4] Length = 220 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A+ L++R+ L L +G T++EIA LG+S TV ++ + L R A+ K Sbjct: 140 SYASPALSQRQLDVLHLLAEGRTNKEIAIILGISPFTVRIHVSAIFRALGVATRAGAVTK 199 Query: 228 AIRFGYI 234 I G + Sbjct: 200 GIAMGLV 206 >gi|189439534|ref|YP_001954615.1| putative response regulator [Bifidobacterium longum DJO10A] gi|189427969|gb|ACD98117.1| Putative response regulator [Bifidobacterium longum DJO10A] Length = 248 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ Sbjct: 188 LTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAV 239 >gi|172039771|ref|YP_001799485.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171851075|emb|CAQ04051.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 248 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 9/101 (8%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN------LTERETS 180 GYV+ + + EV + Q V+ D E + SA N LT RE Sbjct: 136 GYVLDAFSSVAPSPEVQAPSQDLGRQRGGVLKDGAESTESAGSAGGNQPNLDELTPREHE 195 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+L GYT +E+AE+L +SV TV ++ + K NR Sbjct: 196 VLRLLARGYTYKEMAERLFISVKTVETHVSNILRKTQQTNR 236 >gi|170780607|ref|YP_001708939.1| LuxR family transcriptional regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155175|emb|CAQ00275.1| putative LuxR-family transcriptional regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 928 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 28/48 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE LA G ++ EIA +L LSV TV ++L A KL A +R Sbjct: 862 LTRRELEIGVLAAQGLSNREIAGRLFLSVRTVESHLYQARAKLGAPSR 909 >gi|111114986|ref|YP_709604.1| hypothetical protein BAPKO_0166 [Borrelia afzelii PKo] gi|110890260|gb|ABH01428.1| hypothetical protein BAPKO_0166 [Borrelia afzelii PKo] Length = 612 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 42 LDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS 101 + FP ++Q+I L DL S ++ IL+ TY + F +FN + I S+Q++ IE S Sbjct: 208 ISFPFKKQIIRIL---DLSSKNVEKILVRTYDNHFYSYFNGQWVFIGKLSLQDQNFIEKS 264 Query: 102 GQLSVRLEGG 111 ++ + G Sbjct: 265 QRMQLAKNKG 274 >gi|229520043|ref|ZP_04409472.1| hypothetical protein VIF_000560 [Vibrio cholerae TM 11079-80] gi|229525089|ref|ZP_04414494.1| hypothetical protein VCA_002698 [Vibrio cholerae bv. albensis VL426] gi|229338670|gb|EEO03687.1| hypothetical protein VCA_002698 [Vibrio cholerae bv. albensis VL426] gi|229342992|gb|EEO07981.1| hypothetical protein VIF_000560 [Vibrio cholerae TM 11079-80] gi|327483254|gb|AEA77661.1| Transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4] Length = 214 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 A +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 150 QATVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 >gi|84385405|ref|ZP_00988437.1| transcriptional regulator MalT [Vibrio splendidus 12B01] gi|84380002|gb|EAP96853.1| transcriptional regulator MalT [Vibrio splendidus 12B01] Length = 855 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 35/55 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI+ A Sbjct: 792 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAISTA 846 >gi|328884518|emb|CCA57757.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 236 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 175 RLTQREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNR 223 >gi|320108163|ref|YP_004183753.1| ECF subfamily RNA polymerase sigma-24 factor [Terriglobus saanensis SP1PR4] gi|319926684|gb|ADV83759.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Terriglobus saanensis SP1PR4] Length = 189 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F E ++ SA L + + SCL+L +G EI++ LG+S+ +V+A L + +L+ V Sbjct: 127 FNERHRRLQSALDALPQVDQSCLRLRAEGLRYREISKILGISLGSVSASLTRSLARLERV 186 Query: 220 NR 221 R Sbjct: 187 ER 188 >gi|317482273|ref|ZP_07941294.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916289|gb|EFV37690.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 248 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ Sbjct: 188 LTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINARDRVQAV 239 >gi|291557697|emb|CBL34814.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium siraeum V10Sc8a] Length = 207 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 25/149 (16%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFA---GIAFPVRLGFHKNGYVIFTSEFLMLA 142 P++ + E+ +I + L V + G +L GI +R + NG +F + L Sbjct: 76 PLLLTTFDEQELIHRA--LKVGVSGYILKNTQTDGIFSALRTVY--NGGTVFQQDILSYI 131 Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + ++ +G +S+ LTERE ++L DG ++ EIAEKL LS Sbjct: 132 RDAAVKCYG---------------KSAVFGLLTERELDIVKLIADGCSNAEIAEKLFLSN 176 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 TV Y+ K +R Q A+R+ Sbjct: 177 GTVRNYISVILEKTGLEHRTQI---AVRY 202 >gi|317152347|ref|YP_004120395.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316942598|gb|ADU61649.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 208 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 25/44 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L+ERE L L G T+ EIAE L +S+ TV +Y KLD Sbjct: 149 LSEREQQILALLTKGETNAEIAESLEISIRTVESYYARMISKLD 192 >gi|288940382|ref|YP_003442622.1| two component LuxR family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288895754|gb|ADC61590.1| two component transcriptional regulator, LuxR family [Allochromatium vinosum DSM 180] Length = 208 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + + DG +++EIA LG+S TV A+ K+ R +++A+ +R Sbjct: 144 ELTPREHEVMAMVTDGKSNKEIAAALGVSAKTVEAHRARVMEKM----RAESLAELVRMA 199 Query: 233 YIC 235 I Sbjct: 200 LIA 202 >gi|299822491|ref|ZP_07054377.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299816020|gb|EFI83258.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 212 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 31/51 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L L +G ++EIA++L +++ TV ++ + KLD +R QA Sbjct: 149 LTNRENEILLLIAEGKANQEIADELYITLKTVKTHVSNILSKLDVQDRTQA 199 >gi|149187952|ref|ZP_01866248.1| transcriptional regulator MalT [Vibrio shilonii AK1] gi|148838348|gb|EDL55289.1| transcriptional regulator MalT [Vibrio shilonii AK1] Length = 902 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 35/55 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAISTA 893 >gi|148272072|ref|YP_001221633.1| LuxR family transcriptional regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830002|emb|CAN00930.1| putative transcriptional regulator, LuxR family [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 952 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 22/48 (45%), Positives = 28/48 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE LA G ++ EIA +L LSV TV ++L A KL A +R Sbjct: 886 LTRRELEIGVLAAQGLSNREIAGRLFLSVRTVESHLYQARAKLGAPSR 933 >gi|148553319|ref|YP_001260901.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148498509|gb|ABQ66763.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 185 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A LT R+ CL+L S+EI +LG+S TV+ + SA L NR++A Sbjct: 11 AISKLTARQRDCLRLVLHHKQSKEIGRELGISPMTVDNHFRSAIQTLGVSNRLEA 65 >gi|88196315|ref|YP_501137.1| hypothetical protein SAOUHSC_02675 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|269204023|ref|YP_003283292.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus ED98] gi|87203873|gb|ABD31683.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|262076313|gb|ACY12286.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus ED98] gi|269941974|emb|CBI50386.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus TW20] gi|302752262|gb|ADL66439.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|312830737|emb|CBX35579.1| transcriptional regulatory protein degU (Protease production enhancerprotein) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|329315077|gb|AEB89490.1| Oxygen regulatory protein nreC [Staphylococcus aureus subsp. aureus T0131] Length = 200 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L L GY ++EIAEKL +SV TV A+ KL ++ + + A++ Sbjct: 138 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALK 194 >gi|15640423|ref|NP_230050.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587593|ref|ZP_01677358.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121727264|ref|ZP_01680423.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|147675776|ref|YP_001218664.1| LuxR family transcriptional regulator [Vibrio cholerae O395] gi|153818257|ref|ZP_01970924.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|153822263|ref|ZP_01974930.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|227080607|ref|YP_002809158.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|229507036|ref|ZP_04396542.1| hypothetical protein VCF_002258 [Vibrio cholerae BX 330286] gi|229508809|ref|ZP_04398301.1| hypothetical protein VCE_000215 [Vibrio cholerae B33] gi|229519797|ref|ZP_04409240.1| hypothetical protein VCC_003829 [Vibrio cholerae RC9] gi|229530241|ref|ZP_04419629.1| hypothetical protein VCG_003357 [Vibrio cholerae 12129(1)] gi|229606322|ref|YP_002876970.1| hypothetical protein VCD_001227 [Vibrio cholerae MJ-1236] gi|254850628|ref|ZP_05239978.1| transcriptional regulator [Vibrio cholerae MO10] gi|255743782|ref|ZP_05417739.1| DNA-binding HTH domain-containing protein [Vibrio cholera CIRS 101] gi|262153605|ref|ZP_06028733.1| DNA-binding HTH domain-containing protein [Vibrio cholerae INDRE 91/1] gi|262167639|ref|ZP_06035343.1| DNA-binding HTH domain-containing protein [Vibrio cholerae RC27] gi|262191516|ref|ZP_06049700.1| DNA-binding HTH domain-containing protein [Vibrio cholerae CT 5369-93] gi|297580534|ref|ZP_06942460.1| transcriptional regulator [Vibrio cholerae RC385] gi|298501071|ref|ZP_07010872.1| transcriptional regulator [Vibrio cholerae MAK 757] gi|9654817|gb|AAF93569.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548166|gb|EAX58238.1| transcriptional regulator, LuxR family [Vibrio cholerae 2740-80] gi|121630383|gb|EAX62778.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|126511216|gb|EAZ73810.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|126520219|gb|EAZ77442.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|146317659|gb|ABQ22198.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|227008495|gb|ACP04707.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|227012251|gb|ACP08461.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|229332014|gb|EEN97502.1| hypothetical protein VCG_003357 [Vibrio cholerae 12129(1)] gi|229344486|gb|EEO09461.1| hypothetical protein VCC_003829 [Vibrio cholerae RC9] gi|229354212|gb|EEO19143.1| hypothetical protein VCE_000215 [Vibrio cholerae B33] gi|229355781|gb|EEO20701.1| hypothetical protein VCF_002258 [Vibrio cholerae BX 330286] gi|229368977|gb|ACQ59400.1| hypothetical protein VCD_001227 [Vibrio cholerae MJ-1236] gi|254846333|gb|EET24747.1| transcriptional regulator [Vibrio cholerae MO10] gi|255738531|gb|EET93919.1| DNA-binding HTH domain-containing protein [Vibrio cholera CIRS 101] gi|262023975|gb|EEY42672.1| DNA-binding HTH domain-containing protein [Vibrio cholerae RC27] gi|262030632|gb|EEY49268.1| DNA-binding HTH domain-containing protein [Vibrio cholerae INDRE 91/1] gi|262032614|gb|EEY51168.1| DNA-binding HTH domain-containing protein [Vibrio cholerae CT 5369-93] gi|297534950|gb|EFH73785.1| transcriptional regulator [Vibrio cholerae RC385] gi|297540319|gb|EFH76379.1| transcriptional regulator [Vibrio cholerae MAK 757] Length = 214 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 A +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 150 QATVDLTAREIQILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 >gi|323357662|ref|YP_004224058.1| DNA-binding HTH domain-containing proteins [Microbacterium testaceum StLB037] gi|323274033|dbj|BAJ74178.1| DNA-binding HTH domain-containing proteins [Microbacterium testaceum StLB037] Length = 471 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 31/53 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE S DG +++EI+EK G+SV+TV L + KL R QA+A Sbjct: 399 LTSREESLAWSIYDGASNKEISEKDGVSVNTVKVQLSTLYRKLGVSTRKQALA 451 >gi|315503162|ref|YP_004082049.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315409781|gb|ADU07898.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 225 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 35/70 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + +A +LT RE L+L G ++ EIA+ L + TV ++ KL +R+QA Sbjct: 152 PRHDAATADLTPREREVLELVARGASNAEIADVLHVGEATVKTHVSRVLAKLGLRDRVQA 211 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 212 VVFAYEHGVV 221 >gi|313206656|ref|YP_004045833.1| transcriptional regulator, luxr family [Riemerella anatipestifer DSM 15868] gi|312445972|gb|ADQ82327.1| transcriptional regulator, LuxR family [Riemerella anatipestifer DSM 15868] gi|315022153|gb|EFT35182.1| transcriptional regulator, LuxR family protein [Riemerella anatipestifer RA-YM] gi|325335902|gb|ADZ12176.1| transcriptional regulator [Riemerella anatipestifer RA-GD] Length = 252 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ERE + L+L+ G+T EI+EKL ++ TV + KL+ N +A+A A Sbjct: 192 LSEREATVLELSARGFTINEISEKLFVTPDTVKFHRRKIFDKLNVQNISEALAYA 246 >gi|300787361|ref|YP_003767652.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796875|gb|ADJ47250.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 227 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +T+RE L L G G ++ EIAE+L +S T ++ KL+A +R+ Sbjct: 162 EITDREREVLALVGQGLSNTEIAERLVISAATAKTHVARLFAKLEARDRVH 212 >gi|297160777|gb|ADI10489.1| putative two-component regulator [Streptomyces bingchenggensis BCW-1] Length = 262 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L G ++ EIA +L ++ TV +++ K+ A R+QA+ A G Sbjct: 158 DLTERERDILVAVASGRSNAEIAAQLSIATTTVKSHVSRILTKIGARARVQAVVFAYESG 217 Query: 233 YI 234 + Sbjct: 218 LV 219 >gi|294787163|ref|ZP_06752416.1| two-component system response regulator [Parascardovia denticolens F0305] gi|315227300|ref|ZP_07869087.1| two component system response regulator [Parascardovia denticolens DSM 10105] gi|294484519|gb|EFG32154.1| two-component system response regulator [Parascardovia denticolens F0305] gi|315119750|gb|EFT82883.1| two component system response regulator [Parascardovia denticolens DSM 10105] Length = 283 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 27/48 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE +QL GYT +E+A +L +S+ TV ++ KL NR Sbjct: 223 LTSRERQVMQLIARGYTYKEVASELFISIKTVETHVSRVLRKLQLSNR 270 >gi|293115534|ref|ZP_06604529.1| DNA-binding response regulator VraR [Butyrivibrio crossotus DSM 2876] gi|292809348|gb|EFF68553.1| DNA-binding response regulator VraR [Butyrivibrio crossotus DSM 2876] Length = 211 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 31/56 (55%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + +TE+E ++L DG +++EIA +L L TV Y S KL+ +R Q + Sbjct: 151 GKGITEKEFEIIKLVADGLSNKEIASRLYLGEGTVRNYFSSILDKLELRDRTQLVV 206 >gi|229494564|ref|ZP_04388327.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis SK121] gi|229318926|gb|EEN84784.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis SK121] Length = 217 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 31/63 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L + G + IAE+L L TV ++ S KL NR+ A A R G Sbjct: 155 SLTEREREVLTILATGAANSVIAERLYLGESTVKTHISSLFAKLGVPNRVSASLIAFRCG 214 Query: 233 YIC 235 + Sbjct: 215 LVT 217 >gi|226361383|ref|YP_002779161.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226239868|dbj|BAH50216.1| NarL family two-component response regulator [Rhodococcus opacus B4] Length = 211 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +R L+E+E + L G+G T+ EIAE+L L+ T+ Y+ KL R QA Sbjct: 142 RRDDPLAQLSEQERAVFDLIGEGLTNREIAERLFLAEKTIKNYVSRLLSKLGMQRRTQA 200 >gi|189460402|ref|ZP_03009187.1| hypothetical protein BACCOP_01041 [Bacteroides coprocola DSM 17136] gi|189432954|gb|EDV01939.1| hypothetical protein BACCOP_01041 [Bacteroides coprocola DSM 17136] Length = 213 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 4/66 (6%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A + RE + + GYTSEEIA+KL LS T++ + +K A+N ++ Sbjct: 146 SIAYTPSPREKEIINMLSCGYTSEEIAQKLNLSKSTIDTMRKNILLKSGAIN----VSHL 201 Query: 229 IRFGYI 234 +R +I Sbjct: 202 MRLAFI 207 >gi|152964708|ref|YP_001360492.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151359225|gb|ABS02228.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 204 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G ++ EI +L LS TV + KL+A +R QA+A R+G Sbjct: 143 LTEREQQVLVGMSRGRSNAEIGRELFLSEDTVKTHARRLFRKLEAADRAQAVAVGFRWGL 202 Query: 234 I 234 + Sbjct: 203 V 203 >gi|187929793|ref|YP_001900280.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|241663920|ref|YP_002982280.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12D] gi|309781491|ref|ZP_07676227.1| response regulator vsrc transcription regulator protein [Ralstonia sp. 5_7_47FAA] gi|187726683|gb|ACD27848.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|240865947|gb|ACS63608.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] gi|308919904|gb|EFP65565.1| response regulator vsrc transcription regulator protein [Ralstonia sp. 5_7_47FAA] Length = 221 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT R+ S L L +G ++ IA +LGL+ +TV ++ + +L RIQ I++ Sbjct: 152 TPAELGLTPRQGSVLALLLEGLPNKSIARQLGLTENTVKEHVSAILQRLGVRTRIQIISR 211 Query: 228 AIRF 231 RF Sbjct: 212 MERF 215 >gi|145594766|ref|YP_001159063.1| regulatory protein, LuxR [Salinispora tropica CNB-440] gi|145304103|gb|ABP54685.1| regulatory protein, LuxR [Salinispora tropica CNB-440] Length = 231 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G ++ EIA++L +S TV ++G+ KL +R+QA+ A G Sbjct: 166 SLTGREREVLVQVARGRSNAEIAQELSVSETTVKTHVGNVLTKLRLRDRVQAVVLAYESG 225 Query: 233 YI 234 I Sbjct: 226 LI 227 >gi|325262648|ref|ZP_08129385.1| DNA-binding response regulator [Clostridium sp. D5] gi|324032480|gb|EGB93758.1| DNA-binding response regulator [Clostridium sp. D5] Length = 206 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A+ + +RE ++L DG +++EIA L LS TV YL S KL+ +R Q Sbjct: 144 ASYEINDRELEIIRLIADGLSNKEIASTLFLSEGTVRNYLSSILDKLELRDRTQ 197 >gi|315505714|ref|YP_004084601.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412333|gb|ADU10450.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 221 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G ++ EIA ++ ++ TV ++G KL +R+QA+ A G Sbjct: 156 QLTDREREVLLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKLQLRDRVQAVVLAYESG 215 Query: 233 YIC 235 + Sbjct: 216 LVT 218 >gi|302539397|ref|ZP_07291739.1| two component transcriptional regulator [Streptomyces sp. C] gi|302448292|gb|EFL20108.1| two component transcriptional regulator [Streptomyces sp. C] Length = 220 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 2/77 (2%) Query: 149 AHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 A +++ F +L R A +T RE L G T+ EIA+ L +S+ TV Sbjct: 129 APSVTVRLLRAFADLPAGRPVAQPVSPVTAREEQVLLAVARGLTNTEIADALRISLSTVK 188 Query: 207 AYLGSATVKLDAVNRIQ 223 +L S KL A NR++ Sbjct: 189 THLASLMAKLGARNRVE 205 >gi|300772507|ref|ZP_07082377.1| RNA polymerase ECF-type sigma factor [Sphingobacterium spiritivorum ATCC 33861] gi|300760810|gb|EFK57636.1| RNA polymerase ECF-type sigma factor [Sphingobacterium spiritivorum ATCC 33861] Length = 198 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Query: 174 LTERETSCLQLAG-DGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L ++ Q+A DGY+ EEIA LG+S HTVN ++ A + L Sbjct: 133 LPSQQRLVFQMAKLDGYSYEEIARALGISQHTVNTHIKRANIFL 176 >gi|269124765|ref|YP_003298135.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309723|gb|ACY96097.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 226 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 5/64 (7%) Query: 163 LFKKRSSAAR-----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L + R AAR +LT++E L+L G+G T+ +I E++ L+ TV Y+ + KLD Sbjct: 144 LQRVRERAARKDPLASLTDQERQILELIGEGLTNRQIGERMFLAEKTVKNYVSNLFTKLD 203 Query: 218 AVNR 221 R Sbjct: 204 MRRR 207 >gi|206562003|ref|YP_002232766.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia J2315] gi|198038043|emb|CAR53989.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia J2315] Length = 921 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R NL+ RE L G +++EIA L ++ T+ +L + KL+ +RIQA+ Sbjct: 847 RQGGPGNLSAREVEILDYVARGLSNKEIARALRVAPETIKWHLKNVFEKLNVTSRIQAVR 906 Query: 227 KAI 229 + Sbjct: 907 SGL 909 >gi|27764012|emb|CAD60529.1| CinR protein [Streptomyces cinnamoneus] Length = 216 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE+ L L G ++ EIA+ LG+ TV A++ L+ NR+QA Sbjct: 154 RLTPRESDVLGLLAAGASNAEIADGLGMRESTVKAHVSRILAALEVGNRVQA 205 >gi|57865448|ref|YP_189537.1| DegU family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|251811904|ref|ZP_04826377.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282875194|ref|ZP_06284067.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293367099|ref|ZP_06613771.1| LuxR family DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81673409|sp|Q5HLK6|NREC_STAEQ RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|57636106|gb|AAW52894.1| transcriptional regulatory protein DegU, putative [Staphylococcus epidermidis RP62A] gi|251804583|gb|EES57240.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281295959|gb|EFA88480.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291318829|gb|EFE59203.1| LuxR family DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329734541|gb|EGG70852.1| oxygen regulatory protein NreC [Staphylococcus epidermidis VCU045] Length = 218 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEY 209 Query: 228 AIR 230 A++ Sbjct: 210 ALK 212 >gi|85059257|ref|YP_454959.1| putative two-component response regulator [Sodalis glossinidius str. 'morsitans'] gi|84779777|dbj|BAE74554.1| putative two-component response regulator [Sodalis glossinidius str. 'morsitans'] Length = 211 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L DGYT+ IAE+L +SV TV + + KL+ + + + R G Sbjct: 150 LTPRERQILKLIADGYTNRLIAEQLCISVKTVETHRLNIMRKLNVHKVTELLNCSRRLG 208 >gi|33865914|ref|NP_897473.1| DNA-binding response regulator [Synechococcus sp. WH 8102] gi|33633084|emb|CAE07895.1| possible DNA-binding response regulator [Synechococcus sp. WH 8102] Length = 228 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G + +IAE L ++ T Y L+ NR+QA+ K +R G Sbjct: 165 RLTPREYEVLDRLARGMSDRDIAEDLVVTEETARTYTKRLLRTLEVNNRVQAVLKGMRCG 224 Query: 233 YI 234 + Sbjct: 225 MV 226 >gi|119025065|ref|YP_908910.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118764649|dbj|BAF38828.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 221 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 32/67 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ + LT RE + L DG EIAE+L +S TV ++ KL+ Q Sbjct: 151 IRREEETSPRLTVREEQIISLCADGMLDREIAERLDISESTVRKHMQGILKKLNCKTARQ 210 Query: 224 AIAKAIR 230 A+A +R Sbjct: 211 AVALWVR 217 >gi|186680836|ref|YP_001864032.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463288|gb|ACC79089.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 224 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G +++EIAE L ++ TV ++ + KL+ +R QA AI+ G Sbjct: 157 LTKREQEILALVAAGKSNQEIAEILYIAPGTVRVHVHAILQKLEVRDRTQAAVLAIQKGL 216 Query: 234 IC 235 + Sbjct: 217 VA 218 >gi|331000371|ref|ZP_08324052.1| putative transcriptional regulatory protein FixJ [Parasutterella excrementihominis YIT 11859] gi|329572167|gb|EGG53832.1| putative transcriptional regulatory protein FixJ [Parasutterella excrementihominis YIT 11859] Length = 200 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE + L+L G ++ I EKLGLS T+ Y KL +N I + K IR Sbjct: 140 TLSNRERTVLELTLHGLDTQAITEKLGLSDRTIQGYRWRIYQKL-GLNSIDQLIKIIRLE 198 Query: 233 YI 234 ++ Sbjct: 199 WL 200 >gi|326329878|ref|ZP_08196194.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325952315|gb|EGD44339.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 221 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G+G ++ EIA +L L+ TV ++ + KL +R+Q + R G Sbjct: 154 LTAREREVLLLIGEGLSNNEIARRLYLTEATVKTHVSACLAKLQLRDRVQTVVFIHRHGL 213 Query: 234 I 234 + Sbjct: 214 L 214 >gi|297156374|gb|ADI06086.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 217 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LTERE L G+G ++ +I +L LS T+ Y+ KL VNR QA Sbjct: 156 SLTEREAEVLAGLGEGLSNAQIGARLYLSEATIKGYVSRLLDKLGCVNRTQA 207 >gi|284042145|ref|YP_003392485.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946366|gb|ADB49110.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 215 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 29/50 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT+RE L L G T+ EIA +L + + TV ++ S KL A NR++ Sbjct: 155 LTKREEEVLALVARGRTNAEIATELFVGLSTVKTHVASLMTKLGARNRVE 204 >gi|302553638|ref|ZP_07305980.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302471256|gb|EFL34349.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 247 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 186 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 234 >gi|297543927|ref|YP_003676229.1| LuxR family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841702|gb|ADH60218.1| transcriptional regulator, LuxR family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 207 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L + + L L GY +IAE LG+ V TV + KL+ N +A+AKAI+ Sbjct: 143 KLNDSQIKILALEAKGYRGLDIAEALGIEVVTVKYHKRKIVEKLEVKNIKEAVAKAIKLN 202 Query: 233 YI 234 I Sbjct: 203 LI 204 >gi|171912243|ref|ZP_02927713.1| response regulator with a HTH DNA-binding domain [Verrucomicrobium spinosum DSM 4136] Length = 224 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/45 (35%), Positives = 25/45 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LT+RE Q GY ++ IAE+LGL + T+ + + +LD Sbjct: 159 TLTDREMEVFQWLSRGYGTKRIAERLGLGIKTIETHRANIMARLD 203 >gi|15888455|ref|NP_354136.1| two component response regulator [Agrobacterium tumefaciens str. C58] gi|15156149|gb|AAK86921.1| two component response regulator [Agrobacterium tumefaciens str. C58] Length = 202 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 6/97 (6%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE---LFKKRSSAARNLTERET 179 R FH NG V F S+ + + +I+A ++++ L+ L + + LT RE Sbjct: 90 RRAFH-NGAVDFLSK--PVDEQDLIDAIQKAHRILASTLDAKALHAETRALLALLTARER 146 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L+ G+TS +IA+ LGLS TV+++ + +KL Sbjct: 147 EILERIALGFTSRQIADGLGLSPRTVDSHRAAIGLKL 183 >gi|21220239|ref|NP_626018.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256788647|ref|ZP_05527078.1| two-component system response regulator [Streptomyces lividans TK24] gi|289772542|ref|ZP_06531920.1| two-component system response regulator [Streptomyces lividans TK24] gi|5531455|emb|CAB50960.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289702741|gb|EFD70170.1| two-component system response regulator [Streptomyces lividans TK24] Length = 221 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R + LT RE L L G ++ EIA +L ++ TV +++GS KL +R QA Sbjct: 146 RPREAVLAGLTPREREILLLVARGLSNPEIAARLVVTEATVKSHVGSMFAKLHLRDRAQA 205 Query: 225 I 225 + Sbjct: 206 V 206 >gi|84393735|ref|ZP_00992484.1| two component response regulator UhpA [Vibrio splendidus 12B01] gi|84375664|gb|EAP92562.1| two component response regulator UhpA [Vibrio splendidus 12B01] Length = 202 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Query: 149 AHGACYQV--ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 A+G CY I L K ++ LT RE+ QL G + IA +LG+S TV+ Sbjct: 116 ANGGCYLTPDIAIKLATPMKNKASLNQLTRRESEVCQLLATGLDVKSIAVELGVSHKTVH 175 Query: 207 AYLGSATVKLDAVNRIQ 223 + +A KL+ N ++ Sbjct: 176 VHRANAMDKLNVKNNVE 192 >gi|330468229|ref|YP_004405972.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811200|gb|AEB45372.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 208 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 30/51 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE L+L +G ++ EIAE+L + V TV ++ S K + NR++ Sbjct: 150 GLSAREQEVLRLVAEGLSNAEIAERLHIGVTTVKTHITSLMTKTGSPNRVR 200 >gi|320094467|ref|ZP_08026245.1| two component system response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319978600|gb|EFW10165.1| two component system response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 243 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +E L+L G T++EI + +S+ TV ++G K A +R+Q + A+R G Sbjct: 169 GLTGKEVEILRLIARGLTNQEICDAQWVSMATVKTHVGHLLAKTGARDRVQLVLLALRAG 228 Query: 233 YI 234 + Sbjct: 229 LM 230 >gi|319940792|ref|ZP_08015131.1| NarL protein [Sutterella wadsworthensis 3_1_45B] gi|319805674|gb|EFW02455.1| NarL protein [Sutterella wadsworthensis 3_1_45B] Length = 220 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 10/85 (11%) Query: 155 QVITDFLELFKKRSSAARN----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 Q++T F+ + AAR LT RE L G +++EIA L L+ T Sbjct: 128 QMMTKFVNRLSEPPEAARTRQAQGTDPTVLTRRERQTLAWLARGVSNKEIARALNLAEST 187 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAI 229 V ++ S KL+ +R+QA AI Sbjct: 188 VKVHVQSILRKLNLSSRVQAAIYAI 212 >gi|307133126|ref|YP_003885142.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya dadantii 3937] gi|313104103|sp|Q47188|EXPR_DICD3 RecName: Full=Transcriptional activator protein expR gi|306530655|gb|ADN00586.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya dadantii 3937] Length = 250 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 33/68 (48%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +S A ++RE L A G T +EIA LG++ TV ++G+ KL +N AI Sbjct: 173 KSQEADLFSQRENEILHWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIR 232 Query: 227 KAIRFGYI 234 + I Sbjct: 233 LGVEMNLI 240 >gi|289641922|ref|ZP_06474077.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508222|gb|EFD29166.1| GAF modulated transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 459 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE ++L G + EIA++L LS TV +++ S KL + NR +A+++ ++ Sbjct: 397 LTARERRIVELMVTGARNSEIADRLVLSEDTVKSHVRSVLRKLRSANRAEAVSRYLKIA 455 >gi|269140644|ref|YP_003297345.1| ATP-dependent transcriptional regulator MalT-like, LuxR family [Edwardsiella tarda EIB202] gi|267986305|gb|ACY86134.1| ATP-dependent transcriptional regulator MalT-like, LuxR family [Edwardsiella tarda EIB202] gi|304560429|gb|ADM43093.1| Transcriptional activator of maltose regulon MalT [Edwardsiella tarda FL6-60] Length = 904 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L GY++E+IA++L ++ T+ ++ + KL +R +A+ +A Sbjct: 839 LTQREWQVLGLIYSGYSNEQIADELAVAATTIKTHIRNLYQKLGVAHRQEAVRQA 893 >gi|302550551|ref|ZP_07302893.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468169|gb|EFL31262.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ DG T+ EIA ++ + TV +++ + K +R QA+ A G Sbjct: 156 KLTGREREVLRRMADGLTNAEIARRMEVGPATVKSHVAAVLAKTGTRDRTQAVIAAYEAG 215 Query: 233 YI 234 ++ Sbjct: 216 FL 217 >gi|284029769|ref|YP_003379700.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809062|gb|ADB30901.1| transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 271 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 3/94 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 ++++ + A G + + + + A +LT R+ +L G+G T ++IAE+ Sbjct: 174 LMLMSGREAVNAAGQYLRAVRETAVRASELREADADLTSRQQVIAELLGEGCTDDQIAER 233 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +GLSV +V + LDA+N A +R+ Sbjct: 234 IGLSVRSVRYEVARL---LDALNVRTRFAAGVRY 264 >gi|218516276|ref|ZP_03513116.1| probable two-component response regulator protein [Rhizobium etli 8C-3] Length = 91 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 3/61 (4%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +++ L + +G +++IA +LG+S T+ A++ + +KLD +R QA+ I+ G Sbjct: 28 LTPQQSRVLTMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLDVDSRTQAV---IQLGK 84 Query: 234 I 234 I Sbjct: 85 I 85 >gi|154486926|ref|ZP_02028333.1| hypothetical protein BIFADO_00759 [Bifidobacterium adolescentis L2-32] gi|154084789|gb|EDN83834.1| hypothetical protein BIFADO_00759 [Bifidobacterium adolescentis L2-32] Length = 250 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 34/54 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +L+++E L + GY++ +IA+ L +S T+N Y+ A+ K+ ++ +A+A Sbjct: 189 SLSQQEKQVLTMCSHGYSNADIAQVLDVSPSTINTYITRASRKMGVASKREAVA 242 >gi|148255499|ref|YP_001240084.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1] gi|146407672|gb|ABQ36178.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1] Length = 213 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE CLQ A G ++ + AE + +S TV + +A KL QA+AK + + Sbjct: 151 LTQRERICLQWAARGKSALDTAEIINVSRRTVVFHTQNAKRKLGVATVQQAVAKGLAYDI 210 Query: 234 I 234 I Sbjct: 211 I 211 >gi|167039015|ref|YP_001662000.1| regulatory protein LuxR [Thermoanaerobacter sp. X514] gi|300913396|ref|ZP_07130713.1| transcriptional regulator, LuxR family [Thermoanaerobacter sp. X561] gi|307723589|ref|YP_003903340.1| LuxR family transcriptional regulator [Thermoanaerobacter sp. X513] gi|166853255|gb|ABY91664.1| regulatory protein, LuxR [Thermoanaerobacter sp. X514] gi|300890081|gb|EFK85226.1| transcriptional regulator, LuxR family [Thermoanaerobacter sp. X561] gi|307580650|gb|ADN54049.1| transcriptional regulator, LuxR family [Thermoanaerobacter sp. X513] Length = 257 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+++ ++ GYT I+ +LGL TV + KL N QAIAKAI+ Sbjct: 195 KLTDKQIEIIKKCAKGYTELAISMELGLKPSTVKYHKKEIIKKLRVKNFQQAIAKAIKLN 254 Query: 233 YI 234 I Sbjct: 255 LI 256 >gi|113955414|ref|YP_729794.1| two-component response regulator [Synechococcus sp. CC9311] gi|113882765|gb|ABI47723.1| Two-component response regulator, CheY-like receiver and wHTH DNA-binding domains [Synechococcus sp. CC9311] Length = 189 Score = 37.4 bits (85), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 32/48 (66%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 A ++LTER+ + L G+G T++EIA+KLG + T+ + + +KL+ Sbjct: 121 AHQDLTERQQTIYNLIGEGKTTKEIAKKLGSAHSTIETHRKAIALKLN 168 >gi|56421205|ref|YP_148523.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|138896235|ref|YP_001126688.1| germination protein GerE [Geobacillus thermodenitrificans NG80-2] gi|196250193|ref|ZP_03148887.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|261418314|ref|YP_003251996.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297529168|ref|YP_003670443.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|319767726|ref|YP_004133227.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|56381047|dbj|BAD76955.1| transcriptional regulator [Geobacillus kaustophilus HTA426] gi|134267748|gb|ABO67943.1| Germination protein GerE [Geobacillus thermodenitrificans NG80-2] gi|196210377|gb|EDY05142.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|261374771|gb|ACX77514.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|297252420|gb|ADI25866.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] gi|317112592|gb|ADU95084.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 74 Score = 37.4 bits (85), Expect = 1.8, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA++L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREKEVFELLVQDKTTKEIAKELFISEKTVRNHISNAMQKLGVKGRSQAVIELLRMG 70 >gi|329938142|ref|ZP_08287593.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329302631|gb|EGG46521.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 246 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 185 RLTQREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNR 233 >gi|289644029|ref|ZP_06476128.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289506154|gb|EFD27154.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 73 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 31/57 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G +E+I E+L +S TV +++ + KL A NR AIA +R Sbjct: 11 LTSREREVADLMCAGLPNEQIGERLVISPATVKSHIRAILRKLGAANRSHAIAIHLR 67 >gi|261491596|ref|ZP_05988179.1| tetrathionate reductase regulon response regulator [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494956|ref|ZP_05991425.1| tetrathionate reductase regulon response regulator [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309365|gb|EEY10599.1| tetrathionate reductase regulon response regulator [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312722|gb|EEY13842.1| tetrathionate reductase regulon response regulator [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 194 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 29/46 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LTE+E + + L G+T+++IA+KL +SV TV + + K+ A Sbjct: 134 KLTEKERNLVPLIMQGFTNKQIADKLAISVRTVEVHRANVMEKMQA 179 >gi|260459985|ref|ZP_05808238.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259034196|gb|EEW35454.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 871 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RET L+ +G ++ +IA L +S TV +L + KL NR+QA+ A Sbjct: 802 QLTQRETELLRCLSEGMSNRDIAGALSVSETTVKWHLKNIFGKLSVSNRVQAVRAA 857 >gi|218289695|ref|ZP_03493903.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|258512532|ref|YP_003185966.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218240152|gb|EED07336.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|257479258|gb|ACV59577.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 221 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%) Query: 150 HGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 H + + +E + K S ++L T RE L G ++E+IAE L +++ T + Sbjct: 131 HPQVMRAVLGEIERYAKPSDGWKDLLTAREFDVLCQMAAGKSNEQIAESLHITLKTAKNH 190 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+ +R QA+ A R +I Sbjct: 191 VSHILAKLNVSDRSQAVLHAYRERWI 216 >gi|149925384|ref|ZP_01913648.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] gi|149825501|gb|EDM84709.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] Length = 218 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 15/55 (27%), Positives = 34/55 (61%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 A+ LT R+ +++ +G +++ +A+++GLS TV ++ +L+ N+ QA+ Sbjct: 148 AKPLTWRQVEIMRMTAEGLSAKMVAQRIGLSPETVRGHIREIFKRLEVSNKAQAV 202 >gi|117620077|ref|YP_855658.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561484|gb|ABK38432.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 264 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + A +G +IA+ LG++ TV +L + KL A ++ QAI+ A++ G Sbjct: 188 LSLRELEVCRWAAEGKQVSDIAQILGITPRTVTFHLNNVVSKLGASSKSQAISWALKQGM 247 Query: 234 I 234 + Sbjct: 248 V 248 >gi|91777413|ref|YP_552621.1| ATP-dependent transcription regulator LuxR [Burkholderia xenovorans LB400] gi|91690073|gb|ABE33271.1| ATP-dependent transcriptional regulator, MalT related, LuxR family [Burkholderia xenovorans LB400] Length = 947 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +AA L+ERE + L +++IA LG+S TV +L + KL +R +A+A+ Sbjct: 872 TAAETLSEREVRVVGLLAQALPNKKIARTLGISPETVKWHLKNIYGKLSVTSRDEAVAR 930 >gi|77459645|ref|YP_349152.1| sensor protein [Pseudomonas fluorescens Pf0-1] gi|77383648|gb|ABA75161.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 496 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L +G +EIA +L L+ +TV ++ + KLD +R +AI A G Sbjct: 427 DLTARERDVLALICEGLADKEIAARLKLAPNTVRNHVATVYSKLDVHSRSEAIVWARERG 486 >gi|15925381|ref|NP_372915.1| response regulators of two-component regulatory [Staphylococcus aureus subsp. aureus Mu50] gi|15927969|ref|NP_375502.1| hypothetical protein SA2179 [Staphylococcus aureus subsp. aureus N315] gi|21284042|ref|NP_647130.1| hypothetical protein MW2313 [Staphylococcus aureus subsp. aureus MW2] gi|49487173|ref|YP_044394.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57650934|ref|YP_187192.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus COL] gi|87162341|ref|YP_494972.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|148268828|ref|YP_001247771.1| two component LuxR family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394900|ref|YP_001317575.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151222503|ref|YP_001333325.1| transcriptional regulator DegU family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156980706|ref|YP_001442965.1| hypothetical protein SAHV_2375 [Staphylococcus aureus subsp. aureus Mu3] gi|161510583|ref|YP_001576242.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141331|ref|ZP_03565824.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314728|ref|ZP_04837941.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253730063|ref|ZP_04864228.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734193|ref|ZP_04868358.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255007165|ref|ZP_05145766.2| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794731|ref|ZP_05643710.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258407411|ref|ZP_05680554.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258422261|ref|ZP_05685173.1| response regulator receiver [Staphylococcus aureus A9719] gi|258439653|ref|ZP_05690399.1| transcriptional regulator [Staphylococcus aureus A9299] gi|258442790|ref|ZP_05691350.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258446510|ref|ZP_05694665.1| response regulator receiver [Staphylococcus aureus A6300] gi|258450373|ref|ZP_05698465.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224] gi|258451304|ref|ZP_05699337.1| transcriptional regulator [Staphylococcus aureus A5948] gi|258455251|ref|ZP_05703211.1| two component transcriptional regulator [Staphylococcus aureus A5937] gi|262048801|ref|ZP_06021682.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30] gi|262051545|ref|ZP_06023766.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3] gi|282893837|ref|ZP_06302069.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A8117] gi|282920376|ref|ZP_06328099.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A9765] gi|282928424|ref|ZP_06336025.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A10102] gi|284025411|ref|ZP_06379809.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|294848934|ref|ZP_06789679.1| two-component system [Staphylococcus aureus A9754] gi|295405079|ref|ZP_06814892.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819] gi|296276000|ref|ZP_06858507.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus MR1] gi|297209789|ref|ZP_06926185.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244136|ref|ZP_06928026.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796] gi|300910801|ref|ZP_07128251.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304379589|ref|ZP_07362322.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81693835|sp|Q5HDG5|NREC_STAAC RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81696270|sp|Q6G6T0|NREC_STAAS RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81704173|sp|Q7A029|NREC_STAAW RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81705142|sp|Q7A3U5|NREC_STAAN RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81855884|sp|Q99RN8|NREC_STAAM RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|123735950|sp|Q2FEA6|NREC_STAA3 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829240|sp|A7X623|NREC_STAA1 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829241|sp|A6U4C0|NREC_STAA2 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829243|sp|A5IVH2|NREC_STAA9 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829244|sp|A6QJN1|NREC_STAAE RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829245|sp|A8Z580|NREC_STAAT RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829309|sp|Q2FVM7|NREC_STAA8 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|13702340|dbj|BAB43481.1| SA2179 [Staphylococcus aureus subsp. aureus N315] gi|14248165|dbj|BAB58553.1| response regulators of two-component regulatory [Staphylococcus aureus subsp. aureus Mu50] gi|21205485|dbj|BAB96178.1| MW2313 [Staphylococcus aureus subsp. aureus MW2] gi|49245616|emb|CAG44095.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57285120|gb|AAW37214.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus COL] gi|87128315|gb|ABD22829.1| transcriptional regulator, DegU family [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|147741897|gb|ABQ50195.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JH9] gi|149947352|gb|ABR53288.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150375303|dbj|BAF68563.1| transcriptional regulator DegU family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722841|dbj|BAF79258.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160369392|gb|ABX30363.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726276|gb|EES95005.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727888|gb|EES96617.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257788703|gb|EEV27043.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257840923|gb|EEV65374.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257841692|gb|EEV66129.1| response regulator receiver [Staphylococcus aureus A9719] gi|257847429|gb|EEV71431.1| transcriptional regulator [Staphylococcus aureus A9299] gi|257851911|gb|EEV75845.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257854578|gb|EEV77526.1| response regulator receiver [Staphylococcus aureus A6300] gi|257856465|gb|EEV79374.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224] gi|257861096|gb|EEV83911.1| transcriptional regulator [Staphylococcus aureus A5948] gi|257862462|gb|EEV85230.1| two component transcriptional regulator [Staphylococcus aureus A5937] gi|259160529|gb|EEW45552.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3] gi|259163059|gb|EEW47620.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30] gi|282589819|gb|EFB94903.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A10102] gi|282594322|gb|EFB99308.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A9765] gi|282763895|gb|EFC04023.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A8117] gi|285818052|gb|ADC38539.1| Two-component response regulator [Staphylococcus aureus 04-02981] gi|294824313|gb|EFG40737.1| two-component system [Staphylococcus aureus A9754] gi|294970024|gb|EFG46042.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819] gi|296885462|gb|EFH24399.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178914|gb|EFH38159.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796] gi|300887781|gb|EFK82976.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304341765|gb|EFM07671.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315128595|gb|EFT84599.1| transcriptional regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315197413|gb|EFU27750.1| transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320139097|gb|EFW30979.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142526|gb|EFW34335.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329723454|gb|EGG59983.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21172] gi|329726678|gb|EGG63139.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21189] gi|329730103|gb|EGG66493.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21193] Length = 217 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L L GY ++EIAEKL +SV TV A+ KL ++ + + A++ Sbjct: 155 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALK 211 >gi|331699960|ref|YP_004336199.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954649|gb|AEA28346.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 223 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + LT RE+ L L G ++ IA +L +S TV ++L S KL +R A+A A+ Sbjct: 158 ARQGLTHRESEVLSLMVTGLSNRGIATRLVVSDETVKSHLRSIYRKLGVGDRTAAVATAL 217 Query: 230 RFG 232 R G Sbjct: 218 REG 220 >gi|256829663|ref|YP_003158391.1| two component LuxR family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256578839|gb|ACU89975.1| two component transcriptional regulator, LuxR family [Desulfomicrobium baculatum DSM 4028] Length = 219 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 2/55 (3%) Query: 156 VITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +I D++ ++R S+ +NLT RE ++L G S EIAE L +SV TV+ + Sbjct: 135 IIKDYIFTTRQRKGLSSLQNLTPREIDVVKLIFKGKKSREIAEILAISVKTVDKH 189 >gi|218246750|ref|YP_002372121.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059792|ref|YP_003137680.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167228|gb|ACK65965.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256589958|gb|ACV00845.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 221 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%) Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLEL---FKKRSSAARN--------LT 175 NGY + +E L+LA + A GA + T E+ F K+ + + LT Sbjct: 104 NGYCLKGIEAEHLILALRSV--AVGASWWDQTGTTEIQAAFSKKPTINCDIIEGIDNPLT 161 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +RE L L G T++EIA+ L ++ TV ++ + KLD +R QA A++ Sbjct: 162 QREQEILALIALGKTNQEIAQTLSIATGTVRVHVHAILQKLDVRDRTQAAIIALQHA 218 >gi|148556084|ref|YP_001263666.1| sigma-70, region 4 type 2 [Sphingomonas wittichii RW1] gi|148501274|gb|ABQ69528.1| Sigma-70, region 4 type 2 [Sphingomonas wittichii RW1] Length = 198 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTE + CL++ +S++IA +LG+S HTV+ L A L NR +A Sbjct: 27 KLTEAQRVCLRMVLMHLSSKDIARELGISPHTVDQRLRMAIQALGVANRFEA 78 >gi|111223755|ref|YP_714549.1| transcriptional regulator [Frankia alni ACN14a] gi|111151287|emb|CAJ63001.1| Probable transcriptional regulator [Frankia alni ACN14a] Length = 252 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 27/52 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT E + L DG TS +I +L S TV +LGS KL NRI A+ Sbjct: 182 LTITEGRIMHLVRDGLTSRQIGIRLNRSHRTVEKHLGSIYGKLGVTNRIDAV 233 >gi|1217954|emb|CAA65307.1| regulatory protein [Erwinia chrysanthemi] Length = 250 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 33/68 (48%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +S A ++RE L A G T +EIA LG++ TV ++G+ KL +N AI Sbjct: 173 KSQEADLFSQRENEILHWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIR 232 Query: 227 KAIRFGYI 234 + I Sbjct: 233 LGVEMNLI 240 >gi|240172655|ref|ZP_04751314.1| transcriptional regulator, LuxR family protein [Mycobacterium kansasii ATCC 12478] Length = 968 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L+L G ++ I E+L +S +T ++ S +K A NR QA Sbjct: 907 LTDREIEVLRLLAAGLSNRAIGERLYISTNTAANHVRSILIKTGAANRTQA 957 >gi|269125504|ref|YP_003298874.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310462|gb|ACY96836.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 203 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 6/82 (7%) Query: 151 GACYQVIT------DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 GAC ++ D + + S A L+ RE + L G ++ EIA +L LS T Sbjct: 97 GACGHLVPGSFTPLDLIRALRDASRARHGLSAREAEVMDLIATGRSNGEIARQLFLSEKT 156 Query: 205 VNAYLGSATVKLDAVNRIQAIA 226 V ++ KL +R AIA Sbjct: 157 VKNHVNRIYAKLGVTSRASAIA 178 >gi|256822428|ref|YP_003146391.1| two component LuxR family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256795967|gb|ACV26623.1| two component transcriptional regulator, LuxR family [Kangiella koreensis DSM 16069] Length = 212 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 13/118 (11%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARNL 174 VR G +GY++ S L + V A G Y + T + + K+ +NL Sbjct: 94 VRAG--ASGYLLKDSASEELIDAVKALATGKTYYSQYAASVLATQYSQPDKEWQDPYKNL 151 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T+RE L DG T+++IA L +SV T + G KL N A+ +R+ Sbjct: 152 TQREREVFHLVVDGKTTKDIARTLDISVKTAENHRGKVLDKLGVSN----TAELVRYA 205 >gi|225872928|ref|YP_002754385.1| DNA-binding response regulator, LuxR family [Acidobacterium capsulatum ATCC 51196] gi|225794168|gb|ACO34258.1| DNA-binding response regulator, LuxR family [Acidobacterium capsulatum ATCC 51196] Length = 213 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++ L+ERE L L G +++EIA L ++ +TV ++ KL A +R QA+ AI+ Sbjct: 148 SKKLSERELEVLSLISKGKSNKEIAGLLFVTDNTVKMHVKKILSKLQANDRTQAVVIAIQ 207 Query: 231 FGYI 234 G + Sbjct: 208 RGLL 211 >gi|261855565|ref|YP_003262848.1| LuxR family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261836034|gb|ACX95801.1| transcriptional regulator, LuxR family [Halothiobacillus neapolitanus c2] Length = 237 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 5/86 (5%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +H ++IT KK LT RE L+ G TS E + + ++ TVN + Sbjct: 156 SHHCMSEIITT-----KKMPETMITLTMREKDVLRWTAAGKTSGETSTIMNITERTVNFH 210 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + ++ KL+ +N+ A +A G + Sbjct: 211 IANSMQKLNCINKTSATVRAAMLGLL 236 >gi|171911633|ref|ZP_02927103.1| response regulator with a HTH DNA-binding domain [Verrucomicrobium spinosum DSM 4136] Length = 222 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 8/110 (7%) Query: 129 NGYVIFTSE---FLMLANEVIIEAHGACYQVITDFLELF---KKR--SSAARNLTERETS 180 GYV+ ++ FL V+ ++ LE F K R SS L++RE Sbjct: 107 RGYVMKDADGPTFLTAVRTVLAGQRYMSSRLAASVLESFGQSKPRGSSSPIEKLSDREFE 166 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +L G+G T++EIA +L LS TV+ + KL + I +A+R Sbjct: 167 VFRLFGEGKTAKEIAAQLNLSPKTVSVHRDHIKEKLGFSTSAEMIRQAVR 216 >gi|239825932|ref|YP_002948556.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239806225|gb|ACS23290.1| transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 556 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 32/56 (57%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L L G ++ EIA++L +S+HTV ++ + K+ +R Q IA Sbjct: 485 SERLTTREMDVLNLLVQGCSNREIADRLFISIHTVKNHITNIFQKIGVNDRSQLIA 540 >gi|116249026|ref|YP_764867.1| putative transposase protein [Rhizobium leguminosarum bv. viciae 3841] gi|115253676|emb|CAK12069.1| putative transposase protein [Rhizobium leguminosarum bv. viciae 3841] Length = 365 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +FLE +R AAR+L++R L L G S+++AE+LG+ HTV + Sbjct: 17 NFLESQVRRHKAARSLSDRCRMVL-LCAQGLQSKDVAERLGVHEHTVGKW 65 >gi|30315261|gb|AAP30848.1|AF503776_1 HalR [Hafnia alvei] Length = 246 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 29/62 (46%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L A G T EIA +G+SV TV ++G+ KL N QAI + Sbjct: 181 FTAREHEVLYWASMGNTYAEIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVELEL 240 Query: 234 IC 235 I Sbjct: 241 IT 242 >gi|73539273|ref|YP_299640.1| two component LuxR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72122610|gb|AAZ64796.1| two component transcriptional regulator, LuxR family [Ralstonia eutropha JMP134] Length = 223 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 27/45 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L+ERE L L G G+ + EIA KL S+ TV A+ + KLD Sbjct: 161 SLSEREFEVLHLIGLGFGTREIARKLNRSIKTVEAHQANIKEKLD 205 >gi|297563666|ref|YP_003682640.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848114|gb|ADH70134.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 223 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT +E L L G+G T+ +I E+L L+ TV Y+ + KLD R QA Sbjct: 160 ELTPQERQILDLIGEGMTNRQIGERLYLAEKTVKNYVSALLSKLDLKRRTQA 211 >gi|148243360|ref|YP_001228517.1| two-component system response regulator [Synechococcus sp. RCC307] gi|147851670|emb|CAK29164.1| Two-component system response regulator [Synechococcus sp. RCC307] Length = 244 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 32/66 (48%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S + T RE S LQL +G ++EIA +L S+ V Y+ K +R + + A Sbjct: 178 SVEHSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFAKTGTASRTELVRYA 237 Query: 229 IRFGYI 234 + G + Sbjct: 238 LEHGLV 243 >gi|17229630|ref|NP_486178.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17131229|dbj|BAB73837.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 209 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+ G ++ +IA+ L + TV +++ KLD +R QA+ A++ G Sbjct: 147 LSERELEVLRSLAQGMSNADIADALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKRGI 206 Query: 234 I 234 + Sbjct: 207 V 207 >gi|148548339|ref|YP_001268441.1| LuxR family transcriptional regulator [Pseudomonas putida F1] gi|148512397|gb|ABQ79257.1| transcriptional regulator, LuxR family [Pseudomonas putida F1] Length = 303 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 160 FLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 F + ++R AA N LTERE QL G+++ +AE+LG+S T+ ++ + Sbjct: 205 FENILEQRIHAALNNFGSSLLTERECRIAQLILRGHSTRSLAERLGVSEDTIKSHRKNVY 264 Query: 214 VKLD 217 VKLD Sbjct: 265 VKLD 268 >gi|300742422|ref|ZP_07072443.1| two-component system response regulator [Rothia dentocariosa M567] gi|300381607|gb|EFJ78169.1| two-component system response regulator [Rothia dentocariosa M567] Length = 215 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 8/79 (10%) Query: 162 ELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 EL + R+ R LT RE L L +G ++ +IAEKL ++ TV ++ + KLD Sbjct: 137 ELMEHRAVQQRLERLTSRELEVLTLMAEGLSNGDIAEKLFVAEKTVAKHINTLFAKLDLP 196 Query: 220 N------RIQAIAKAIRFG 232 + R+QA+ +R G Sbjct: 197 DTNSNARRVQAVLHLLRNG 215 >gi|260204619|ref|ZP_05772110.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis K85] gi|289574024|ref|ZP_06454251.1| transcriptional regulator [Mycobacterium tuberculosis K85] gi|289538455|gb|EFD43033.1| transcriptional regulator [Mycobacterium tuberculosis K85] Length = 1159 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1091 KRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQL 1150 Query: 225 IAKA 228 + +A Sbjct: 1151 VQEA 1154 >gi|226312583|ref|YP_002772477.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095531|dbj|BAH43973.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 215 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L L G ++ +I+ KL +S HTV +L + KL NR+Q Sbjct: 151 KLTSREREILGLVAKGLSNRDISSKLVISEHTVKNHLKNILQKLHLENRVQ 201 >gi|182416054|ref|YP_001821120.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177843268|gb|ACB77520.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 210 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 8/82 (9%) Query: 160 FLELFKKRSSAARN--------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 F F++ A RN L+E E + L L G G + EEI E+L LS TV + Sbjct: 115 FSAAFQRAKLARRNDPRSFTKVLSEWERAILSLIGQGLSDEEIGERLQLSPRTVQTHRSH 174 Query: 212 ATVKLDAVNRIQAIAKAIRFGY 233 KL + IA AI G+ Sbjct: 175 LLQKLKLKGTPKLIAFAIEHGF 196 >gi|148985585|ref|ZP_01818774.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147922305|gb|EDK73426.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|301800762|emb|CBW33411.1| response regulator protein [Streptococcus pneumoniae OXC141] Length = 199 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E + L+ G +++EIA++L S T+ Y+ + KLDA NR +A A G+ Sbjct: 139 LTEQEIAVLKGIARGLSNQEIADQLYFSNGTIRNYVTNILSKLDAGNRTEAANIAKESGW 198 Query: 234 I 234 + Sbjct: 199 L 199 >gi|119899725|ref|YP_934938.1| LuxR family DNA-binding response regulator [Azoarcus sp. BH72] gi|119672138|emb|CAL96052.1| probable DNA-binding response regulator, LuxR family [Azoarcus sp. BH72] Length = 208 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 31/60 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +T L+L G T+ EIA+ LGLS TV ++ + L NR QA+ R G Sbjct: 146 GLTAAQTRVLELLAQGKTNREIADLLGLSEGTVKVHMSAIFRALGVSNRAQALVVIARHG 205 >gi|218753069|ref|ZP_03531865.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|253799593|ref|YP_003032594.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|254550372|ref|ZP_05140819.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|297633912|ref|ZP_06951692.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297730900|ref|ZP_06960018.1| transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|313658233|ref|ZP_07815113.1| transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|253321096|gb|ACT25699.1| transcriptional regulator [Mycobacterium tuberculosis KZN 1435] gi|328459339|gb|AEB04762.1| transcriptional regulator [Mycobacterium tuberculosis KZN 4207] Length = 870 Score = 37.4 bits (85), Expect = 1.9, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 802 KRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQL 861 Query: 225 IAKA 228 + +A Sbjct: 862 VQEA 865 >gi|78222725|ref|YP_384472.1| LuxR family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193980|gb|ABB31747.1| transcriptional regulator, LuxR family [Geobacter metallireducens GS-15] Length = 246 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 32/67 (47%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ LT RE + +G EI+ LG+S TV + + KL A NR A+A Sbjct: 177 SACLATLTPREIEVISWLANGKNYWEISVILGISERTVKFHTSTIVQKLGAANRSHAVAI 236 Query: 228 AIRFGYI 234 AI G I Sbjct: 237 AISTGLI 243 >gi|317481541|ref|ZP_07940594.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] gi|316902297|gb|EFV24198.1| luxR family Bacterial regulatory protein [Bacteroides sp. 4_1_36] Length = 240 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/40 (42%), Positives = 27/40 (67%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 S + L+ RE L+L G+ S+EIA +LG+S++TVN + Sbjct: 188 SPDKQLSNREKEILRLIRQGFLSKEIAYQLGVSIYTVNNH 227 >gi|309812761|ref|ZP_07706500.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185] gi|308433278|gb|EFP57171.1| transcriptional regulator, LuxR family [Dermacoccus sp. Ellin185] Length = 501 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT R+ + L G + +IAE+L LSV++V +++ A +D R QA+ + GY Sbjct: 170 LTARQAQIVDLICSGMPNAQIAERLHLSVNSVKSHIRGAYRAMDVQTRPQAVLWGLARGY 229 >gi|258516412|ref|YP_003192634.1| transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257780117|gb|ACV64011.1| transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 224 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL ++ EIA++L +S TV ++ + KL NR QAI + + G Sbjct: 160 LTRREMEILQLIAISLSNREIAKRLFISEPTVKTHVSNILRKLGQQNRSQAIVYSYKNGL 219 Query: 234 I 234 I Sbjct: 220 I 220 >gi|77404774|ref|YP_345347.1| DNA-binding HTH domain-containing proteins [Rhodobacter sphaeroides 2.4.1] gi|77390424|gb|ABA81606.1| DNA-binding HTH domain-containing proteins [Rhodobacter sphaeroides 2.4.1] Length = 213 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I L +R +A R LT + L+L DGY + IA LG++ V A L SA + Sbjct: 127 IEKLLLGMHRRRTAPR-LTTSQIEALRLLADGYRYKRIAHILGITESAVKARLKSAVSQT 185 Query: 217 DAVNRIQAIAKAIRFGYI 234 A +QA+ A+ G + Sbjct: 186 GARTPVQALQIAMNAGLL 203 >gi|88797997|ref|ZP_01113584.1| two-component transcriptional regulator, LuxR family protein [Reinekea sp. MED297] gi|88779194|gb|EAR10382.1| two-component transcriptional regulator, LuxR family protein [Reinekea sp. MED297] Length = 303 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE+ L +G T+ E AE L +S TVN +L KL NR A A++ Sbjct: 237 DLTGRESEVLYWIANGKTNRETAEILAMSPRTVNKHLEQIFSKLGVDNRTSAAGVALKL 295 >gi|326902980|gb|EGE49913.1| transcriptional regulator [Mycobacterium tuberculosis W-148] Length = 1158 Score = 37.0 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1090 KRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQL 1149 Query: 225 IAKA 228 + +A Sbjct: 1150 VQEA 1153 >gi|308231817|ref|ZP_07413875.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu001] gi|308369777|ref|ZP_07419024.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu002] gi|308215965|gb|EFO75364.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu001] gi|308326515|gb|EFP15366.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu002] Length = 998 Score = 37.0 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 930 KRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQL 989 Query: 225 IAKA 228 + +A Sbjct: 990 VQEA 993 >gi|317057055|ref|YP_004105522.1| LuxR family two component transcriptional regulator [Ruminococcus albus 7] gi|315449324|gb|ADU22888.1| two component transcriptional regulator, LuxR family [Ruminococcus albus 7] Length = 211 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 35/59 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L++ G T++++AE+LG+S +TV +++ S K +R + KA G Sbjct: 145 LTERELEILRIVTTGATNQQVAEQLGISENTVKSHVRSMLDKTGFRSRTELAIKARVLG 203 >gi|260186297|ref|ZP_05763771.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289446953|ref|ZP_06436697.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289419911|gb|EFD17112.1| transcriptional regulator [Mycobacterium tuberculosis CPHL_A] Length = 1159 Score = 37.0 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1091 KRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQL 1150 Query: 225 IAKA 228 + +A Sbjct: 1151 VQEA 1154 >gi|300773710|ref|ZP_07083579.1| possible transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] gi|300759881|gb|EFK56708.1| possible transcriptional regulator [Sphingobacterium spiritivorum ATCC 33861] Length = 215 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +QL DG+ S+ I+EKL +S +TV + + KL+ N + + AI++ Sbjct: 155 LTNREIQIIQLICDGHNSKVISEKLFISFNTVETHRKNIFQKLNIKNSLGLLRLAIQYDL 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|228920976|ref|ZP_04084313.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838670|gb|EEM83974.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 213 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 34/59 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 151 LTKREQEVLREIAKGRSNKEIAAELYITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|254491848|ref|ZP_05105027.1| Sigma-70, region 4 family [Methylophaga thiooxidans DMS010] gi|224463326|gb|EEF79596.1| Sigma-70, region 4 family [Methylophaga thiooxydans DMS010] Length = 168 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +SA +L+ RE L+L G+G + EI++ LG+S TV L KLD I A+ Sbjct: 101 TSALSDLSRRELEILRLLGEGKSMNEISDVLGISYKTVANNLTQIKSKLD----ISKTAE 156 Query: 228 AIRFG 232 +RF Sbjct: 157 LMRFA 161 >gi|126667864|ref|ZP_01738830.1| DNA-binding response regulator, LuxR family protein [Marinobacter sp. ELB17] gi|126627680|gb|EAZ98311.1| DNA-binding response regulator, LuxR family protein [Marinobacter sp. ELB17] Length = 217 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 24/46 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LT RE GYTS EIAE+LG+ V T++ Y +L A Sbjct: 147 TLTRRERDVFLPLAKGYTSREIAEQLGVGVKTIDLYRARVMKRLGA 192 >gi|254231608|ref|ZP_04924935.1| hypothetical protein TBCG_01339 [Mycobacterium tuberculosis C] gi|124600667|gb|EAY59677.1| hypothetical protein TBCG_01339 [Mycobacterium tuberculosis C] Length = 1159 Score = 37.0 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1091 KRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQL 1150 Query: 225 IAKA 228 + +A Sbjct: 1151 VQEA 1154 >gi|121637289|ref|YP_977512.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224989763|ref|YP_002644450.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|121492936|emb|CAL71407.1| Probable transcriptional regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772876|dbj|BAH25682.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 1159 Score = 37.0 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1091 KRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQL 1150 Query: 225 IAKA 228 + +A Sbjct: 1151 VQEA 1154 >gi|15840814|ref|NP_335851.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|13881010|gb|AAK45665.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis CDC1551] Length = 1159 Score = 37.0 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1091 KRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQL 1150 Query: 225 IAKA 228 + +A Sbjct: 1151 VQEA 1154 >gi|54294847|ref|YP_127262.1| hypothetical protein lpl1926 [Legionella pneumophila str. Lens] gi|148359520|ref|YP_001250727.1| hypothetical protein LPC_1430 [Legionella pneumophila str. Corby] gi|296107564|ref|YP_003619265.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Legionella pneumophila 2300/99 Alcoy] gi|53754679|emb|CAH16166.1| hypothetical protein lpl1926 [Legionella pneumophila str. Lens] gi|148281293|gb|ABQ55381.1| hypothetical protein LPC_1430 [Legionella pneumophila str. Corby] gi|295649466|gb|ADG25313.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Legionella pneumophila 2300/99 Alcoy] Length = 270 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 30/57 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L +R+ C QL G T+EEIA L LS TV Y+ KL+A N+ I K + Sbjct: 204 LPKRQIECAQLLVRGKTAEEIAIILNLSKRTVEHYINILKRKLNAHNKGLLITKLLH 260 >gi|31792554|ref|NP_855047.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97] gi|31618143|emb|CAD94254.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium bovis AF2122/97] Length = 1159 Score = 37.0 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1091 KRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQL 1150 Query: 225 IAKA 228 + +A Sbjct: 1151 VQEA 1154 >gi|15608498|ref|NP_215874.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|148661147|ref|YP_001282670.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|167969108|ref|ZP_02551385.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|215403206|ref|ZP_03415387.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|215411003|ref|ZP_03419811.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|215426686|ref|ZP_03424605.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis T92] gi|215430244|ref|ZP_03428163.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|215445540|ref|ZP_03432292.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis T85] gi|260200414|ref|ZP_05767905.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis T46] gi|289442801|ref|ZP_06432545.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289745110|ref|ZP_06504488.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289749914|ref|ZP_06509292.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289753440|ref|ZP_06512818.1| transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|289757463|ref|ZP_06516841.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|294994916|ref|ZP_06800607.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 210] gi|298524865|ref|ZP_07012274.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|306784088|ref|ZP_07422410.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu003] gi|306803061|ref|ZP_07439729.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu008] gi|306971645|ref|ZP_07484306.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu010] gi|307079357|ref|ZP_07488527.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu011] gi|307083922|ref|ZP_07493035.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu012] gi|1419061|emb|CAA99963.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] gi|148505299|gb|ABQ73108.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|289415720|gb|EFD12960.1| transcriptional regulator [Mycobacterium tuberculosis T46] gi|289685638|gb|EFD53126.1| transcriptional regulatory protein [Mycobacterium tuberculosis 02_1987] gi|289690501|gb|EFD57930.1| transcriptional regulator [Mycobacterium tuberculosis T92] gi|289694027|gb|EFD61456.1| transcriptional regulatory protein [Mycobacterium tuberculosis EAS054] gi|289713027|gb|EFD77039.1| transcriptional regulatory protein [Mycobacterium tuberculosis T85] gi|298494659|gb|EFI29953.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A] gi|308331157|gb|EFP20008.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu003] gi|308350279|gb|EFP39130.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu008] gi|308358872|gb|EFP47723.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu010] gi|308362809|gb|EFP51660.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu011] gi|308366456|gb|EFP55307.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu012] Length = 1159 Score = 37.0 bits (84), Expect = 1.9, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1091 KRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQL 1150 Query: 225 IAKA 228 + +A Sbjct: 1151 VQEA 1154 >gi|86144900|ref|ZP_01063232.1| two component response regulator UhpA [Vibrio sp. MED222] gi|85837799|gb|EAQ55911.1| two component response regulator UhpA [Vibrio sp. MED222] Length = 202 Score = 37.0 bits (84), Expect = 1.9, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Query: 149 AHGACYQV--ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 A+G CY I L K ++ LT RE+ QL G + IA +LG+S TV+ Sbjct: 116 ANGGCYLTPDIAIKLATPMKNKASLNQLTRRESEVCQLLATGLDVKSIAVELGVSHKTVH 175 Query: 207 AYLGSATVKLDAVNRIQ 223 + +A KL+ N ++ Sbjct: 176 VHRANAMDKLNVKNNVE 192 >gi|294501457|ref|YP_003565157.1| spore germination regulator [Bacillus megaterium QM B1551] gi|295706805|ref|YP_003599880.1| spore germination regulator [Bacillus megaterium DSM 319] gi|294351394|gb|ADE71723.1| spore germination regulator [Bacillus megaterium QM B1551] gi|294804464|gb|ADF41530.1| spore germination regulator [Bacillus megaterium DSM 319] Length = 74 Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|288916721|ref|ZP_06411095.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288351795|gb|EFC85998.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 237 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 31/63 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL G ++ E+A +L LS TV ++ KL +R QA+ A G Sbjct: 165 TLTPREVEVLQLLATGLSNAELAARLVLSEATVKTHVARIMAKLGLRDRAQAVVVAYETG 224 Query: 233 YIC 235 + Sbjct: 225 LVT 227 >gi|260462698|ref|ZP_05810904.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319782267|ref|YP_004141743.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259031604|gb|EEW32874.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317168155|gb|ADV11693.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 240 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 28/57 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L A G TS E ++ LGL+ TV + A QAI +A+R Sbjct: 178 LTEREKEVLLWAAAGKTSSETSQILGLAERTVKWHATRAREAFGVATTTQAIVEAVR 234 >gi|302524673|ref|ZP_07277015.1| two component transcriptional regulator [Streptomyces sp. AA4] gi|302433568|gb|EFL05384.1| two component transcriptional regulator [Streptomyces sp. AA4] Length = 202 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/61 (42%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L A G + EIA L LSV TV YL A K A NR+ A+ A G+ Sbjct: 142 LTARERDVLIAARGGGSVAEIAGSLYLSVGTVRNYLSGAIAKTGARNRMGAVRVAEERGW 201 Query: 234 I 234 + Sbjct: 202 L 202 >gi|271965398|ref|YP_003339594.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508573|gb|ACZ86851.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 295 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 28/55 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L RE ++L G T+ EIA +L LS HT+ YL K++ R + AK Sbjct: 223 QLGRREQQVIRLIAAGLTTAEIAARLSLSTHTIRGYLKRIFEKVEVSTRGELTAK 277 >gi|225175237|ref|ZP_03729233.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225169413|gb|EEG78211.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 215 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + + LTE E L L +G T+++IAE++ L+ TV Y+ +KL+ NR A A Sbjct: 146 SGKTLTEMEKKVLLLIAEGKTNKQIAEEIFLAEKTVRNYVSKIFLKLNLSNRAAAAA 202 >gi|5051409|emb|CAB44989.1| NarL protein [Pseudomonas stutzeri] Length = 218 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 8/104 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAAR--NLTERETS 180 +GY++ + L ++ I A G QV+ + + + K S + +LT+RE Sbjct: 104 DGYLLKDMDAEQLIEQIRIAATGRMALSPELTQVLAEAIRVRPKPSGQVQFSHLTKREKE 163 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+L G +++ IA KLG++ TV ++ + KL +R++A Sbjct: 164 VLRLIAKGQSNKMIARKLGITEGTVKVHVKNLLHKLGLRSRVEA 207 >gi|27382417|ref|NP_773946.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355588|dbj|BAC52571.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 211 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE S +QL +G+T+ ++ L LSV TV + SA KL + + + AIR Sbjct: 149 LTSREQSVVQLIAEGHTNRSMSVILKLSVKTVETHRASAMRKLGMSSTAELVRYAIR 205 >gi|152976905|ref|YP_001376422.1| response regulator receiver protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025657|gb|ABS23427.1| response regulator receiver protein [Bacillus cytotoxicus NVH 391-98] Length = 74 Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|309779465|ref|ZP_07674226.1| ExpA [Ralstonia sp. 5_7_47FAA] gi|308921706|gb|EFP67342.1| ExpA [Ralstonia sp. 5_7_47FAA] Length = 211 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L++RE L++ G G T EIAE L +SV TV+ Y G K+ N Sbjct: 150 LSDREFQTLRMLGSGRTLGEIAEALQISVKTVSVYRGRVLSKMKLRN 196 >gi|296283688|ref|ZP_06861686.1| two-component signal transduction histidine kinase [Citromicrobium bathyomarinum JL354] Length = 257 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +SA LTE+E CL L + T++EIA +L +S H V L A KL+ ++A Sbjct: 10 TSAIERLTEKERECLWLWLEHKTAKEIALQLDVSHHAVEKRLKMARTKLNVATSLEA 66 >gi|289577641|ref|YP_003476268.1| LuxR family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|289527354|gb|ADD01706.1| transcriptional regulator, LuxR family [Thermoanaerobacter italicus Ab9] Length = 257 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+++ ++ GYT I+ +LGL TV + KL N QAIAKAI+ Sbjct: 195 KLTDKQIEIIKKCAKGYTELAISMELGLKPATVKYHKKEIIKKLRVKNLQQAIAKAIKLN 254 Query: 233 YI 234 I Sbjct: 255 LI 256 >gi|228990919|ref|ZP_04150883.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] gi|228768856|gb|EEM17455.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] Length = 191 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L G T+ EIAE L +S TV ++ + KL ++R +A A G+ Sbjct: 123 LSERELEVLRLIARGLTNAEIAESLFISGKTVKGHVSNILSKLHMLDRTKAAVFAWEQGF 182 Query: 234 I 234 + Sbjct: 183 M 183 >gi|225620688|ref|YP_002721946.1| DNA-binding response regulator, LuxR family protein [Brachyspira hyodysenteriae WA1] gi|225215508|gb|ACN84242.1| DNA-binding response regulator, LuxR family protein [Brachyspira hyodysenteriae WA1] Length = 317 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 NLT RE L DG T++E++ L +S++TVN ++ + K NR++ + K Sbjct: 259 NLTRREKEILSYLLDGKTNKEVSLILSISLNTVNNHVANIYEKSGVKNRVELVNK 313 >gi|146308830|ref|YP_001189295.1| response regulator receiver protein [Pseudomonas mendocina ymp] gi|145577031|gb|ABP86563.1| response regulator receiver protein [Pseudomonas mendocina ymp] Length = 212 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L GYT+ E+AE+L +SV TV+ Y ++ A + + AI G Sbjct: 142 QLTPRERDVLLPLVRGYTNREVAEQLDISVKTVDLYRSRVMKRMQAETLPELVGMAIAAG 201 Query: 233 YI 234 + Sbjct: 202 LV 203 >gi|308374292|ref|ZP_07435483.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu006] gi|308342443|gb|EFP31294.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu006] Length = 1077 Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1009 KRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQL 1068 Query: 225 IAKA 228 + +A Sbjct: 1069 VQEA 1072 >gi|308371945|ref|ZP_07426771.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu004] gi|308373119|ref|ZP_07431080.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu005] gi|308334997|gb|EFP23848.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu004] gi|308338804|gb|EFP27655.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu005] gi|323720175|gb|EGB29278.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] Length = 1124 Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 1056 KRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQL 1115 Query: 225 IAKA 228 + +A Sbjct: 1116 VQEA 1119 >gi|291300839|ref|YP_003512117.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570059|gb|ADD43024.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 219 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ +G ++ EIA L +S TV Y+ KL +R+QA+ A R G Sbjct: 158 LTPRELEVLRHIANGLSNSEIAATLVISHETVKTYVSRILTKLGLRDRVQAVVYAYRRG 216 >gi|148822580|ref|YP_001287334.1| transcriptional regulator [Mycobacterium tuberculosis F11] gi|289554850|ref|ZP_06444060.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289761519|ref|ZP_06520897.1| regulatory protein [Mycobacterium tuberculosis GM 1503] gi|148721107|gb|ABR05732.1| hypothetical transcriptional regulatory protein [Mycobacterium tuberculosis F11] gi|289439482|gb|EFD21975.1| transcriptional regulator [Mycobacterium tuberculosis KZN 605] gi|289709025|gb|EFD73041.1| regulatory protein [Mycobacterium tuberculosis GM 1503] Length = 887 Score = 37.0 bits (84), Expect = 2.0, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 35/64 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ S+ LT E ++L +G +++IA +L +S TV +L KLD +R+Q Sbjct: 819 KRPSNGWDALTPAEHKIVKLVTEGLVTKDIAARLFVSPRTVQTHLTHIYTKLDVTSRVQL 878 Query: 225 IAKA 228 + +A Sbjct: 879 VQEA 882 >gi|329939305|ref|ZP_08288641.1| regulatory protein [Streptomyces griseoaurantiacus M045] gi|329301534|gb|EGG45428.1| regulatory protein [Streptomyces griseoaurantiacus M045] Length = 344 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +T RE S L +G+ +AE+LG+SV T A++ + L A +R Q Sbjct: 261 GITHRERSIAALLAEGHQDAAVAERLGISVRTCRAHIARLSETLGAASRTQ 311 >gi|289771573|ref|ZP_06530951.1| LuxR family transcriptional regulator [Streptomyces lividans TK24] gi|289701772|gb|EFD69201.1| LuxR family transcriptional regulator [Streptomyces lividans TK24] Length = 338 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 E S LQL +GYT E IA +LG+SV TV ++ A+ + +R Q Sbjct: 263 ETRRSVLQLMVNGYTDEAIAGRLGMSVRTVATHVRKASEAFGSRSRAQ 310 >gi|284041837|ref|YP_003392177.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946058|gb|ADB48802.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 220 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R LT RE L L +G ++ E +L +S TV ++ KL+A NR+Q Sbjct: 153 RRLTPREREVLALVAEGCSNAEAGRRLQMSEATVKTHVSRLLDKLEAANRVQ 204 >gi|258652644|ref|YP_003201800.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555869|gb|ACV78811.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 220 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L L G + EIA LS +T+ +Y+ S K+ +R QA+ + Sbjct: 145 AEGLTDREAEILALITQGRGNAEIASMTYLSPNTIKSYIRSVYRKIGVSSRTQAVLWGVH 204 Query: 231 FGY 233 G+ Sbjct: 205 HGF 207 >gi|229818194|ref|ZP_04448476.1| hypothetical protein BIFANG_03490 [Bifidobacterium angulatum DSM 20098] gi|229784445|gb|EEP20559.1| hypothetical protein BIFANG_03490 [Bifidobacterium angulatum DSM 20098] Length = 226 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 29/50 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE ++L GYT +E+A +L +SV TV ++ S KL NR + Sbjct: 166 LSNREQEVMRLIARGYTYKEVAAELFISVKTVETHVSSVLRKLQLSNRTE 215 >gi|222055170|ref|YP_002537532.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Geobacter sp. FRC-32] gi|221564459|gb|ACM20431.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Geobacter sp. FRC-32] Length = 187 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 14/153 (9%) Query: 79 HFNSGLLPIIWQSIQEETVIESSGQL----SVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 ++ LL I++ +++E ++E GQ + R P G+ F L I Sbjct: 24 RYHRNLLNFIYRLVRDEALVEDLGQEIFLDAFRGLRDFDPHRGVPFAAWLFILARNRCIS 83 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTE-----RETSCLQLAG 186 L N V IE I D ELF ++R + R+L + RET LAG Sbjct: 84 EVRARTLRNFVDIEGIPEPAGSIPDAEELFLAGERREALRRSLEQLPEPFRETILQSLAG 143 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + EEIA K G+S+ TV + L A L A+ Sbjct: 144 K--SLEEIAAKDGVSLGTVKSRLFRAKEGLKAL 174 >gi|21221141|ref|NP_626920.1| LuxR family transcriptional regulator [Streptomyces coelicolor A3(2)] gi|8052395|emb|CAB92252.1| putative luxR-family transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 338 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 E S LQL +GYT E IA +LG+SV TV ++ A+ + +R Q Sbjct: 263 ETRRSVLQLMVNGYTDEAIAGRLGMSVRTVATHVRKASEAFGSRSRAQ 310 >gi|320107298|ref|YP_004182888.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925819|gb|ADV82894.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 204 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+ G++++ IA L LS HT+ +L + KL A +R A+ A+ G+ Sbjct: 142 LSPREVEVLRHVSAGHSNKVIASDLDLSEHTIKGHLKNILSKLGANDRTHAVMIALNRGF 201 Query: 234 I 234 + Sbjct: 202 L 202 >gi|304405086|ref|ZP_07386746.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345965|gb|EFM11799.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 227 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LTERE L+L G +++EIA+ L + + TV ++ + KL +R QA Sbjct: 159 AKAHEQLTEREMDVLKLVAQGKSNQEIADDLFIGIKTVKFHVTNIFSKLGVDDRTQAAIY 218 Query: 228 AIRFG 232 A + G Sbjct: 219 AHKQG 223 >gi|291297909|ref|YP_003509187.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567129|gb|ADD40094.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 134 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 35/68 (51%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S R L+ERET L G ++ EI +L ++ TV + KL A +R A+A+ Sbjct: 67 ASLRRGLSERETQVLLGIAGGKSNAEIGRELFITEDTVKTHARRMYRKLGARDRAHAVAE 126 Query: 228 AIRFGYIC 235 A R G + Sbjct: 127 AFRIGILS 134 >gi|256787683|ref|ZP_05526114.1| LuxR family transcriptional regulator [Streptomyces lividans TK24] Length = 298 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 E S LQL +GYT E IA +LG+SV TV ++ A+ + +R Q Sbjct: 223 ETRRSVLQLMVNGYTDEAIAGRLGMSVRTVATHVRKASEAFGSRSRAQ 270 >gi|254496316|ref|ZP_05109202.1| two-component response regulator [Legionella drancourtii LLAP12] gi|254354477|gb|EET13126.1| two-component response regulator [Legionella drancourtii LLAP12] Length = 212 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 3/63 (4%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 TD +E +R ++ LTERE + L +G ++EIA +L +S+ TV A+ + K+ Sbjct: 127 TDAIEYINERINS---LTERERQIIDLISEGKLNKEIAYELTISISTVEAHRANIMRKMQ 183 Query: 218 AVN 220 A N Sbjct: 184 AKN 186 >gi|302874384|ref|YP_003843017.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] gi|307691015|ref|ZP_07633461.1| two component transcriptional regulator, LuxR family protein [Clostridium cellulovorans 743B] gi|302577241|gb|ADL51253.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] Length = 204 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++S LTERE L G ++EEIA+ L +S HTV ++ + K + NR Q Sbjct: 137 QNSMINQLTEREKDVLTEIRKGLSNEEIAKVLYISEHTVKKHVSNILSKFNLSNRTQV 194 >gi|229059933|ref|ZP_04197307.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228719346|gb|EEL70950.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 211 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 37/68 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K++ + LT+RE L+ G +++EIA L ++ TV ++ + KL+ +R QA Sbjct: 142 KEKENPFSMLTKREQEVLREIAKGRSNKEIAAALHITEQTVKTHVSNVLAKLEVDDRTQA 201 Query: 225 IAKAIRFG 232 A++ G Sbjct: 202 ALYAVKHG 209 >gi|297201229|ref|ZP_06918626.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197712908|gb|EDY56942.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 32/52 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LT+RET L L G +++E+AE+L ++ T+ ++ VKL +R QA Sbjct: 157 DLTDRETEVLILIAQGLSNQEMAERLLVAESTIKTHVSRILVKLGLRDRTQA 208 >gi|307154613|ref|YP_003889997.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984841|gb|ADN16722.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 211 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L G ++ EI++ L ++ TV +L + KLD +R QA+ A+ G Sbjct: 149 LSNRELEVLRLIAKGKSNSEISQDLSIAESTVRFHLKNIFSKLDVGDRTQALVTALNRGI 208 Query: 234 I 234 + Sbjct: 209 V 209 >gi|144899605|emb|CAM76469.1| DNA-binding response regulator, LuxR family [Magnetospirillum gryphiswaldense MSR-1] Length = 228 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE+ L L +G T++EIA L L T+ +L + K+ A NR QA+ A+ G Sbjct: 159 KLSRRESEILALLVEGRTNKEIAIALELQEITIKVHLRNVYRKIGAANRAQAVRIAMSSG 218 Query: 233 Y 233 + Sbjct: 219 W 219 >gi|145296385|ref|YP_001139206.1| hypothetical protein cgR_2299 [Corynebacterium glutamicum R] gi|57158168|dbj|BAD84136.1| putative two-component response regulator [Corynebacterium glutamicum] gi|140846305|dbj|BAF55304.1| hypothetical protein [Corynebacterium glutamicum R] Length = 205 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G S+ I +LG+SV TV+ + K DA + + +RFG Sbjct: 144 LTIREKEVLRLVVEGLPSQNIGRRLGMSVKTVDVHRTRIKSKTDADSVGTFVRDVLRFG 202 >gi|18266384|gb|AAL67541.1|AF459919_7 competence two-component regulator ComA [Bacillus licheniformis] Length = 212 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 9/92 (9%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEE 193 + +L N+++++ Y + K +S++ + LTERE L+ GYT++E Sbjct: 117 YQVLDNKIVVD-----YDYFKQLITQQKSKSNSQQTQHDLLTERECLILKEVEKGYTNQE 171 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 IA+ L LS ++ L S KL+ +R +A+ Sbjct: 172 IADALHLSKRSIEYSLTSVFSKLNVGSRTEAV 203 >gi|84495164|ref|ZP_00994283.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84384657|gb|EAQ00537.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 219 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 34/71 (47%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S R LT RE L+L G ++ EIA +L ++ TV ++ KL +R Q Sbjct: 146 VPKDSPRLRELTPRELEVLELIARGLSNVEIATRLFVAEQTVKTHVSRVLAKLGLRDRAQ 205 Query: 224 AIAKAIRFGYI 234 A+ A G + Sbjct: 206 AVVFAYEHGVV 216 >gi|317405267|gb|EFV85597.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 186 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 29/57 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 NLT RE +G + +EIA +L +S TV + KLDA N + ++K I Sbjct: 124 NLTRREREISAYVANGLSCKEIAMRLDISYRTVEVHRARIMRKLDAKNTAELVSKII 180 >gi|260459364|ref|ZP_05807619.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259034918|gb|EEW36174.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 219 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 4/99 (4%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F E L+ A ++ +E + + ++F L + +S L+ RE + L G +++ Sbjct: 122 FDDEELLSAIKLALERSKSALALDSEFQALKDRHTS----LSRREQEVMTLVVSGLLNKQ 177 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 I +LG+S TV A+ G A K+ A + Q + A R G Sbjct: 178 IGFELGISEITVKAHRGQAMRKMQARSLAQLVHMAARLG 216 >gi|239979006|ref|ZP_04701530.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291450884|ref|ZP_06590274.1| two-component system regulator [Streptomyces albus J1074] gi|291353833|gb|EFE80735.1| two-component system regulator [Streptomyces albus J1074] Length = 237 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 161 APRLTARETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIE 220 Query: 231 FG 232 G Sbjct: 221 AG 222 >gi|197285412|ref|YP_002151284.1| nitrate/nitrite response regulator [Proteus mirabilis HI4320] gi|194682899|emb|CAR43257.1| nitrate/nitrite response regulator [Proteus mirabilis HI4320] Length = 207 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEF--LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 NGY++ E L+L+ + + + +++L + S LT+RE LQ Sbjct: 101 NGYLLKECELDMLLLSLRKAVVGRPVYSEKVWQYIQLRQNYSDPLSALTKRELDVLQEVA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G +++IAE L +S TV ++ + KL +R+ A Sbjct: 161 VGMKNKQIAENLFISEETVKVHIRNILKKLQVTSRLAA 198 >gi|260904160|ref|ZP_05912482.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brevibacterium linens BL2] Length = 207 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 7/108 (6%) Query: 135 TSEFLMLANEVIIE-----AHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGD 187 T+E ++ A V+ E A ++I++++ K K ++ LT+RE + L Sbjct: 97 TAEDMITAVRVVAEGQSLLAPSVTRRLISEYVSGPKIAKDTAVLGQLTDREIDVMTLVAK 156 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G+ + E+AE L L+ TV ++ KL +R Q + A G + Sbjct: 157 GHANAEVAEHLFLAEQTVKTHVSRILSKLGLRDRTQIVVAAYESGLVV 204 >gi|21222228|ref|NP_628007.1| two-component system response transcriptional regulator [Streptomyces coelicolor A3(2)] gi|5457253|emb|CAB46941.1| putative two-component system response transcriptional regulator [Streptomyces coelicolor A3(2)] Length = 218 Score = 37.0 bits (84), Expect = 2.0, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTE+E L+L G+G T+ I E+L L+ T+ Y+ S KL R QA A Sbjct: 155 RLTEQERRILELIGEGLTNRAIGERLHLAEKTIKNYVSSLLGKLGMQRRSQAAA 208 >gi|331000094|ref|ZP_08323789.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] gi|329572978|gb|EGG54598.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] Length = 211 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LT RE + LA G ++ EIA++LG+ TV + +A KL +R++A Sbjct: 143 SLTNREKDVIVLAAKGASNREIADQLGIGQETVKMHCSNAYGKLGVRSRLEA 194 >gi|312196500|ref|YP_004016561.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227836|gb|ADP80691.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 229 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L G ++ E+AE LS +TV +Y+ + K+ +R QA+ + G Sbjct: 155 GLTEREAEVLALITQGRSNAELAEITCLSPNTVKSYIRTLYRKIGVTSRSQAVLWGVNHG 214 Query: 233 Y 233 + Sbjct: 215 F 215 >gi|256419151|ref|YP_003119804.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256034059|gb|ACU57603.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 253 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA--IAKAIRF 231 L+ RE LQL +G +S+EIA +L +S++TV+ + + KL N I+A IA+AI Sbjct: 193 LSFREKQLLQLIRNGKSSKEIATQLSISINTVSRHRQNILEKLHVKNSIEACRIAEAIEL 252 >gi|209548302|ref|YP_002280219.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534058|gb|ACI53993.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 70 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 N+T RET + G T+ EI L +S TVN ++ +A +L +A A+R G Sbjct: 8 NVTPRETEIIGWMAAGKTAAEIGTILAISHITVNTHIANAKARLGVFKDTALVAAALRNG 67 Query: 233 YI 234 I Sbjct: 68 II 69 >gi|148255988|ref|YP_001240573.1| two component LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146408161|gb|ABQ36667.1| two component transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 205 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 27/42 (64%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +S R L++RE QL G+G T+ +IA LG S+ T+ +++ Sbjct: 135 TSTMRALSDRELQVFQLVGEGRTTRQIAAMLGRSIKTIESHV 176 >gi|145594124|ref|YP_001158421.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303461|gb|ABP54043.1| response regulator receiver [Salinispora tropica CNB-440] Length = 212 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++LT++E L+ +G T+ EIA K+ L+ TV Y+ S KL R QA A R Sbjct: 148 KSLTDQERRILEYVAEGLTNREIAGKMFLAEKTVKNYVSSMLAKLGLERRTQAAVLATRL 207 >gi|119025388|ref|YP_909233.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118764972|dbj|BAF39151.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 226 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR Sbjct: 166 LSNREQEVMRLIARGYTYKEVASELFISIKTVETHMSSVLRKLQLSNR 213 >gi|84495477|ref|ZP_00994596.1| putative two-component response regulator [Janibacter sp. HTCC2649] gi|84384970|gb|EAQ00850.1| putative two-component response regulator [Janibacter sp. HTCC2649] Length = 234 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G G ++ EIA L L T+ ++ + KL +R+QA+ A G Sbjct: 163 LTDRELEVLILMGRGRSNAEIAADLFLGEATIKTHVSNCLAKLHLRDRVQAVVFAYEVGL 222 Query: 234 I 234 I Sbjct: 223 I 223 >gi|332526102|ref|ZP_08402240.1| response regulator [Rubrivivax benzoatilyticus JA2] gi|332109945|gb|EGJ10573.1| response regulator [Rubrivivax benzoatilyticus JA2] Length = 245 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE+ L G+T +EIA +G+ TVN ++ S KL+ +R +A A + G Sbjct: 184 RLTPRESEVLTYLSKGFTIKEIASLMGIKWFTVNDHIKSIYKKLNVSSRAEAAVLASKQG 243 Query: 233 YI 234 + Sbjct: 244 LV 245 >gi|312195091|ref|YP_004015152.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311226427|gb|ADP79282.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Frankia sp. EuI1c] Length = 1275 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 32/59 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A L++RE + L T+ EIA +L +SV+TV +L S KLD R A+ +A Sbjct: 1211 GADRLSDRELAVLSYLPTMLTTAEIAAELYVSVNTVKTHLKSIYRKLDVARRRDAVHRA 1269 >gi|258592846|emb|CBE69155.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 237 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 27/58 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RET LQ G EIAE L LSV TV + KL NR + A+R Sbjct: 174 RLTLRETQVLQHIAQGLPDREIAESLQLSVRTVENHAARIRKKLQVDNRTALVRYALR 231 >gi|312198089|ref|YP_004018150.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311229425|gb|ADP82280.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 277 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R LT RE L+L +G ++ E A++L +S TV AYL + KL NR Sbjct: 213 GRALTRRELDVLRLVAEGLSNAEAAQQLVVSPETVKAYLRNIRSKLGVNNR 263 >gi|167755832|ref|ZP_02427959.1| hypothetical protein CLORAM_01348 [Clostridium ramosum DSM 1402] gi|167704771|gb|EDS19350.1| hypothetical protein CLORAM_01348 [Clostridium ramosum DSM 1402] Length = 67 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L ++ +IA+ LG+S TV ++ + KL +RIQA+ + I+F Sbjct: 5 LTPREKEIFNLLIKNQSTRDIAKTLGISEKTVRNHISNVIQKLGVDSRIQAVFELIKF 62 >gi|28901478|ref|NP_801133.1| transcriptional regulator MalT [Vibrio parahaemolyticus RIMD 2210633] gi|260363030|ref|ZP_05775899.1| transcriptional regulator, LuxR family protein [Vibrio parahaemolyticus K5030] gi|260880317|ref|ZP_05892672.1| HTH-type transcriptional regulator MalT [Vibrio parahaemolyticus AN-5034] gi|260896700|ref|ZP_05905196.1| HTH-type transcriptional regulator MalT [Vibrio parahaemolyticus Peru-466] gi|260900035|ref|ZP_05908430.1| transcriptional regulator, LuxR family protein [Vibrio parahaemolyticus AQ4037] gi|46577014|sp|Q87FQ5|MALT_VIBPA RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|28810025|dbj|BAC62966.1| malT regulatory protein [Vibrio parahaemolyticus RIMD 2210633] gi|308085445|gb|EFO35140.1| HTH-type transcriptional regulator MalT [Vibrio parahaemolyticus Peru-466] gi|308091846|gb|EFO41541.1| HTH-type transcriptional regulator MalT [Vibrio parahaemolyticus AN-5034] gi|308110026|gb|EFO47566.1| transcriptional regulator, LuxR family protein [Vibrio parahaemolyticus AQ4037] gi|308112209|gb|EFO49749.1| transcriptional regulator, LuxR family protein [Vibrio parahaemolyticus K5030] gi|328469409|gb|EGF40355.1| transcriptional regulator MalT [Vibrio parahaemolyticus 10329] Length = 902 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTA 893 >gi|330468534|ref|YP_004406277.1| LuxR family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811505|gb|AEB45677.1| LuxR family two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 229 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G ++ EIA L +S T+ ++G+ KL +R+QA+ A G Sbjct: 164 TLTDREREVLGQVARGLSNAEIARALSVSETTIKTHVGNVLTKLGLRDRVQAVVLAYESG 223 Query: 233 YI 234 + Sbjct: 224 LV 225 >gi|312132068|ref|YP_003999408.1| two component transcriptional regulator, luxr family [Leadbetterella byssophila DSM 17132] gi|311908614|gb|ADQ19055.1| two component transcriptional regulator, LuxR family [Leadbetterella byssophila DSM 17132] Length = 204 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 2/106 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +GY++ ++ + ++ + G Y + L++ ++ LT RE L L +G Sbjct: 101 SGYLLKSASREEMEEAILTVSSGKLYMSLE--LDISREEIKKMPVLTTREREVLVLIAEG 158 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ +IAE+L +S HTV+++ + K + N I A + G I Sbjct: 159 LTNPQIAERLFVSPHTVDSHRKNLLTKFEVNNTAGLIKWAAKNGLI 204 >gi|318058792|ref|ZP_07977515.1| two-component system DNA-binding response regulator [Streptomyces sp. SA3_actG] gi|318075476|ref|ZP_07982808.1| two-component system DNA-binding response regulator [Streptomyces sp. SA3_actF] gi|333026609|ref|ZP_08454673.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332746461|gb|EGJ76902.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 218 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 31/49 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L G++ +EIA++L +SV TV +++ + KL NR Sbjct: 157 KLTQRERDVLRLIARGHSYKEIAKELFISVKTVESHVSAVLRKLQLSNR 205 >gi|296162106|ref|ZP_06844903.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. Ch1-1] gi|295887612|gb|EFG67433.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. Ch1-1] Length = 948 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +AA L+ERE + L +++IA LG+S TV +L + KL +R +A+A+ Sbjct: 873 AAAETLSEREARVVGLLAQALPNKKIARTLGISPETVKWHLKNIYGKLSVTSRDEAVAR 931 >gi|325675545|ref|ZP_08155229.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|325553516|gb|EGD23194.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 224 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 11/103 (10%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR--------NLTERE 178 GYV T LA+ V A G ++ L+ F RS+A +LT RE Sbjct: 109 GYVTKTISGAELADGVRRVAGGDAVFSPRLAGFVLDSFTGRSNAPEPPLDPELDSLTPRE 168 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+L GYT EIAE+L +SV TV + + K NR Sbjct: 169 LEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNR 211 >gi|315505839|ref|YP_004084726.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412458|gb|ADU10575.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 222 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L ++ EIA +L LS TV ++ + KL +RIQA+ A G Sbjct: 155 LTAREREVLTLTARALSNAEIAARLHLSTATVKTHVSAILTKLSLRDRIQAVVLAYDTGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|239978584|ref|ZP_04701108.1| two-component response regulator [Streptomyces albus J1074] gi|291450480|ref|ZP_06589870.1| two-component system response regulator [Streptomyces albus J1074] gi|291353429|gb|EFE80331.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLNKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|153837304|ref|ZP_01989971.1| HTH-type transcriptional regulator MalT [Vibrio parahaemolyticus AQ3810] gi|149749444|gb|EDM60206.1| HTH-type transcriptional regulator MalT [Vibrio parahaemolyticus AQ3810] Length = 902 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTA 893 >gi|312140819|ref|YP_004008155.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311890158|emb|CBH49476.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 224 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 46/103 (44%), Gaps = 11/103 (10%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR--------NLTERE 178 GYV T LA+ V A G ++ L+ F RS+A +LT RE Sbjct: 109 GYVTKTISGAELADGVRRVAGGDAVFSPRLAGFVLDSFTGRSNAPEPPLDPELDSLTPRE 168 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+L GYT EIAE+L +SV TV + + K NR Sbjct: 169 LEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNR 211 >gi|295402188|ref|ZP_06812146.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|294975779|gb|EFG51399.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] Length = 211 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 16/113 (14%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQ--------VITDFLELFKKRSSAAR---NLTER 177 NG+++ T+E + +I+A +C + V + ++S R L+ R Sbjct: 99 NGFLLKTAE-----QQKLIQAIYSCMKGGMTIHEDVAAKMVPKLLQKSKQVRVDIPLSPR 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E +L G+G T++EIA +L LS+ TV ++ KL +R Q AI+ Sbjct: 154 ELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIK 206 >gi|269961189|ref|ZP_06175557.1| malT regulatory protein, positive regulatory protein [Vibrio harveyi 1DA3] gi|269834140|gb|EEZ88231.1| malT regulatory protein, positive regulatory protein [Vibrio harveyi 1DA3] Length = 902 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTA 893 >gi|302540281|ref|ZP_07292623.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302457899|gb|EFL20992.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 239 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 31/60 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R A L+ RE L L G+G T+ +I ++L LS TV ++ KL RIQA Sbjct: 159 EPRDEALAGLSPREREILALIGEGLTNRQIGKRLFLSEKTVKNHISRLLAKLGVERRIQA 218 >gi|284989297|ref|YP_003407851.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062542|gb|ADB73480.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 270 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTER+ L +G ++EEIA +L LS TV ++L + +LD R Q Sbjct: 207 RLTERQRDVATLVAEGLSNEEIASRLFLSPATVKSHLTAVMRRLDIRTRTQ 257 >gi|157371504|ref|YP_001479493.1| transcriptional regulator RcsB [Serratia proteamaculans 568] gi|270262774|ref|ZP_06191045.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|157323268|gb|ABV42365.1| two component transcriptional regulator, LuxR family [Serratia proteamaculans 568] gi|270043458|gb|EFA16551.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 216 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSKLLERISASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|52081663|ref|YP_080454.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52787048|ref|YP_092877.1| ComA [Bacillus licheniformis ATCC 14580] gi|319647579|ref|ZP_08001799.1| competence two-component system response regulator ComA [Bacillus sp. BT1B_CT2] gi|52004874|gb|AAU24816.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52349550|gb|AAU42184.1| ComA [Bacillus licheniformis ATCC 14580] gi|301752362|gb|ADK89157.1| ComA [Bacillus licheniformis] gi|301752375|gb|ADK89166.1| ComA [Bacillus licheniformis 9945A] gi|317390427|gb|EFV71234.1| competence two-component system response regulator ComA [Bacillus sp. BT1B_CT2] Length = 212 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 9/92 (9%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEE 193 + +L N+++++ Y + K +S++ + LTERE L+ GYT++E Sbjct: 117 YQVLDNKIVVD-----YDYFKQLITQQKSKSNSQQTQHDLLTERECLILKEVEKGYTNQE 171 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 IA+ L LS ++ L S KL+ +R +A+ Sbjct: 172 IADALHLSKRSIEYSLTSVFSKLNVGSRTEAV 203 >gi|75812491|ref|YP_320110.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705247|gb|ABA24921.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 223 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 37/68 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ + LT RE L L G T++EIA +L ++ TV ++ + KL+ +R QA+ Sbjct: 153 RAKLSNPLTGREQEILSLLAAGKTNQEIAHQLCIAPGTVRVHIHAILQKLEVSDRTQAVL 212 Query: 227 KAIRFGYI 234 A++ I Sbjct: 213 VALQKQLI 220 >gi|254227334|ref|ZP_04920766.1| HTH-type transcriptional regulator MalT [Vibrio sp. Ex25] gi|262396399|ref|YP_003288252.1| transcriptional activator of maltose regulon MalT [Vibrio sp. Ex25] gi|151939946|gb|EDN58772.1| HTH-type transcriptional regulator MalT [Vibrio sp. Ex25] gi|262339993|gb|ACY53787.1| transcriptional activator of maltose regulon MalT [Vibrio sp. Ex25] Length = 902 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTA 893 >gi|319941693|ref|ZP_08016016.1| hypothetical protein HMPREF9464_01235 [Sutterella wadsworthensis 3_1_45B] gi|319804814|gb|EFW01676.1| hypothetical protein HMPREF9464_01235 [Sutterella wadsworthensis 3_1_45B] Length = 216 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE +L G +++IA++L +S+ TV + G+A KL V A+AKA+ Sbjct: 146 LTERELEVARLVAQGLLNKQIADRLSISLPTVKLHRGNAARKL-GVRSAVAMAKALEMA 203 >gi|188534209|ref|YP_001908006.1| Regulatory protein [Erwinia tasmaniensis Et1/99] gi|188029251|emb|CAO97128.1| Regulatory protein [Erwinia tasmaniensis Et1/99] Length = 240 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE L+ +G TS EI+ L +S +TVN + + +A N+ Q + A G Sbjct: 179 DLSERELEVLKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAIG 238 Query: 233 YI 234 I Sbjct: 239 LI 240 >gi|156741904|ref|YP_001432033.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156233232|gb|ABU58015.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 204 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 31/48 (64%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L++RE + L+L +G T+ EIA +LGL+V TV A++ KL +R Sbjct: 130 LSDREYAVLRLLAEGATNREIAAELGLAVKTVEAHVHGVLHKLRQSSR 177 >gi|111020244|ref|YP_703216.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110819774|gb|ABG95058.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 818 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 16/35 (45%), Positives = 24/35 (68%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 LT R+ + L G+T++EIAE+LG+SV TV + Sbjct: 777 LTRRQREIVALVSQGFTNKEIAERLGVSVRTVEGH 811 >gi|21224963|ref|NP_630742.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|3334798|emb|CAA19946.1| putative two-component regulator [Streptomyces coelicolor A3(2)] Length = 222 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIA L +S HTV ++ + KL +R+QA+ A G Sbjct: 157 LTAREVETLRLLARGLSNSEIATTLFVSEHTVKTHVSNVLGKLGLRDRVQAVICAYETGL 216 Query: 234 IC 235 + Sbjct: 217 VA 218 >gi|148821582|ref|YP_001286336.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis F11] gi|148720109|gb|ABR04734.1| hypothetical transcriptional regulatory protein, luxR/uhpA-family [Mycobacterium tuberculosis F11] Length = 1085 Score = 37.0 bits (84), Expect = 2.1, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ ++ +LT E ++L G+G +++IA +L +S TV +L KL +R+Q Sbjct: 1018 KRPATGWESLTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQL 1077 Query: 225 IAKAIR 230 A R Sbjct: 1078 AQAAAR 1083 >gi|124268227|ref|YP_001022231.1| LuxR family DNA binding response regulator [Methylibium petroleiphilum PM1] gi|124261002|gb|ABM95996.1| DNA binding response regulator, LuxR family [Methylibium petroleiphilum PM1] Length = 209 Score = 37.0 bits (84), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S A L+ERE S G T +IAE L LS TV +L KL+A N+ + Sbjct: 141 TSPADMLSEREFSVFIQLARGMTVAQIAETLKLSPSTVGTHLYHIKQKLNASNQSEITLV 200 Query: 228 AIRFGYI 234 A+R+G I Sbjct: 201 ALRWGLI 207 >gi|289770570|ref|ZP_06529948.1| two-component system response transcriptional regulator [Streptomyces lividans TK24] gi|289700769|gb|EFD68198.1| two-component system response transcriptional regulator [Streptomyces lividans TK24] Length = 218 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTE+E L+L G+G T+ I E+L L+ T+ Y+ S KL R QA A Sbjct: 155 RLTEQERRILELIGEGLTNRAIGERLHLAEKTIKNYVSSLLGKLGMQRRSQAAA 208 >gi|269837258|ref|YP_003319486.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786521|gb|ACZ38664.1| transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 549 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G T+ IAE L +S TV ++ + KLD +R A A A G Sbjct: 484 GLTAREVEVLRLVAEGKTNRAIAEDLFISEKTVARHISNIFTKLDLSSRAAATAYAYEHG 543 Query: 233 YI 234 + Sbjct: 544 IV 545 >gi|161521689|ref|YP_001585116.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189352145|ref|YP_001947772.1| transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221210733|ref|ZP_03583713.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD1] gi|160345739|gb|ABX18824.1| transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189336167|dbj|BAG45236.1| transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221169689|gb|EEE02156.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD1] Length = 510 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA +LGL+ +TV ++ + KLD +R +AI A G Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 233 YI 234 + Sbjct: 490 IV 491 >gi|238792863|ref|ZP_04636493.1| HTH-type transcriptional regulator malT [Yersinia intermedia ATCC 29909] gi|238727717|gb|EEQ19241.1| HTH-type transcriptional regulator malT [Yersinia intermedia ATCC 29909] Length = 903 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF-- 231 LT+RE L L GY++E+IA +L ++ T+ ++ + KL +R +A+ +A R Sbjct: 839 LTQREWQVLGLIYSGYSNEQIAGELEVAATTIKTHIRNLYQKLGVAHRQEAVQQAQRLLQ 898 Query: 232 --GYI 234 GY+ Sbjct: 899 MMGYV 903 >gi|332829196|gb|EGK01860.1| hypothetical protein HMPREF9455_02008 [Dysgonomonas gadei ATCC BAA-286] Length = 292 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 34/50 (68%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +++ A+ L++RE L+L G ++E+A+KL +S++TV ++ + T KL Sbjct: 218 KATKAQALSQRELDVLRLVALGLLNKEVADKLNISLNTVLSHRKNITAKL 267 >gi|298246666|ref|ZP_06970471.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549325|gb|EFH83191.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1067 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 36/59 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L+ERE L+ +G ++ EIA +L +++ TV +++ + KL +R QA+ +A R Sbjct: 1006 SLSERECEVLRHISEGRSNREIARQLVIALSTVKSHIRAIYAKLGVKSRTQALIQARRL 1064 >gi|297622897|ref|YP_003704331.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164077|gb|ADI13788.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 508 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA L++RE L+ G ++E IA +LGL+ TV Y+ + KL +R +A+ A Sbjct: 442 SALVTLSKRERQVLERLARGKSNEAIAAELGLATQTVRNYISAVYDKLGVRSRAEAVVWA 501 Query: 229 IRFGYI 234 G I Sbjct: 502 RERGVI 507 >gi|260185253|ref|ZP_05762727.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis CPHL_A] gi|289445924|ref|ZP_06435668.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis CPHL_A] gi|289418882|gb|EFD16083.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis CPHL_A] Length = 1085 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ ++ +LT E ++L G+G +++IA +L +S TV +L KL +R+Q Sbjct: 1018 KRPATGWESLTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQL 1077 Query: 225 IAKAIR 230 A R Sbjct: 1078 AQAAAR 1083 >gi|196228675|ref|ZP_03127541.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226956|gb|EDY21460.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 217 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 28/44 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LT+RE +QL +G +++E+A+ LG+SV TV + + KL Sbjct: 154 RLTDREREIVQLLAEGASNKEVADSLGISVKTVETHRAAIMKKL 197 >gi|182413058|ref|YP_001818124.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840272|gb|ACB74524.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 196 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 R+S R LT RET LQL +G +++IA LG+S+ TV + Sbjct: 153 RTSGTR-LTSRETEVLQLVAEGQANKQIASVLGISIKTVEKH 193 >gi|156976077|ref|YP_001446983.1| transcriptional regulator MalT [Vibrio harveyi ATCC BAA-1116] gi|189028673|sp|A7N5N6|MALT_VIBHB RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|156527671|gb|ABU72756.1| hypothetical protein VIBHAR_04848 [Vibrio harveyi ATCC BAA-1116] Length = 902 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTA 893 >gi|154686976|ref|YP_001422137.1| GerE [Bacillus amyloliquefaciens FZB42] gi|308174538|ref|YP_003921243.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|154352827|gb|ABS74906.1| GerE [Bacillus amyloliquefaciens FZB42] gi|307607402|emb|CBI43773.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7] gi|328554460|gb|AEB24952.1| transcriptional regulator [Bacillus amyloliquefaciens TA208] gi|328912864|gb|AEB64460.1| transcriptional regulator of spore coat protein [Bacillus amyloliquefaciens LL3] Length = 74 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|126653126|ref|ZP_01725255.1| hypothetical protein BB14905_12845 [Bacillus sp. B14905] gi|126590131|gb|EAZ84256.1| hypothetical protein BB14905_12845 [Bacillus sp. B14905] Length = 243 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 30/58 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +T RE L G + EIA++L +S +T+ +L + K NR Q +AK + + Sbjct: 182 MTAREREVLNFVSKGLKNVEIAQQLIVSENTIKKHLQNLYRKFQVTNRTQLLAKCLNY 239 >gi|91776279|ref|YP_546035.1| LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710266|gb|ABE50194.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 257 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE + G T++EI L +S TV +L KL+ +NR QA+AK Sbjct: 201 LSGRELEIMDWVTKGKTNQEIGMILDISAFTVKNHLQRIFKKLNVMNRAQAVAK 254 >gi|86356190|ref|YP_468082.1| two-component response regulator protein [Rhizobium etli CFN 42] gi|86280292|gb|ABC89355.1| probable two-component response regulator protein [Rhizobium etli CFN 42] Length = 215 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 3/62 (4%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +++ L + +G +++IA +LG+S T+ A++ + +KLD +R QA+ I+ G Sbjct: 151 TLTPQQSRVLTMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLDVDSRTQAV---IQLG 207 Query: 233 YI 234 I Sbjct: 208 KI 209 >gi|15607527|ref|NP_214900.1| LuxR/UHPA family transcriptional regulator [Mycobacterium tuberculosis H37Rv] gi|121636299|ref|YP_976522.1| LuxR family transcriptional regulator [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660152|ref|YP_001281675.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|215409895|ref|ZP_03418703.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 94_M4241A] gi|218752013|ref|ZP_03530809.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|224988771|ref|YP_002643458.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253797309|ref|YP_003030310.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis KZN 1435] gi|254549329|ref|ZP_05139776.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289552635|ref|ZP_06441845.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis KZN 605] gi|289760498|ref|ZP_06519876.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|294995142|ref|ZP_06800833.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 210] gi|297632868|ref|ZP_06950648.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis KZN 4207] gi|297729843|ref|ZP_06958961.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis KZN R506] gi|298523861|ref|ZP_07011270.1| hypothetical transcriptional regulatory protein, luxR/uhpA-family [Mycobacterium tuberculosis 94_M4241A] gi|306783013|ref|ZP_07421335.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis SUMu003] gi|306787383|ref|ZP_07425705.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis SUMu004] gi|306791934|ref|ZP_07430236.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis SUMu005] gi|306796121|ref|ZP_07434423.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis SUMu006] gi|306806192|ref|ZP_07442860.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis SUMu007] gi|306966388|ref|ZP_07479049.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis SUMu009] gi|306970584|ref|ZP_07483245.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis SUMu010] gi|307078311|ref|ZP_07487481.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis SUMu011] gi|313657172|ref|ZP_07814052.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis KZN V2475] gi|2909507|emb|CAA17392.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR/UHPA-FAMILY) [Mycobacterium tuberculosis H37Rv] gi|121491946|emb|CAL70409.1| Probable transcriptional regulatory protein (probably luxR/uhpA-family) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148504304|gb|ABQ72113.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|224771884|dbj|BAH24690.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253318812|gb|ACT23415.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis KZN 1435] gi|289437267|gb|EFD19760.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis KZN 605] gi|289708004|gb|EFD72020.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|298493655|gb|EFI28949.1| hypothetical transcriptional regulatory protein, luxR/uhpA-family [Mycobacterium tuberculosis 94_M4241A] gi|308332180|gb|EFP21031.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis SUMu003] gi|308335939|gb|EFP24790.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis SUMu004] gi|308339591|gb|EFP28442.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis SUMu005] gi|308343445|gb|EFP32296.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis SUMu006] gi|308347337|gb|EFP36188.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis SUMu007] gi|308355934|gb|EFP44785.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis SUMu009] gi|308359891|gb|EFP48742.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis SUMu010] gi|308363792|gb|EFP52643.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis SUMu011] gi|323721239|gb|EGB30299.1| transcriptional regulator [Mycobacterium tuberculosis CDC1551A] gi|326902212|gb|EGE49145.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis W-148] gi|328457096|gb|AEB02519.1| transcriptional regulator, luxR/uhpA-family [Mycobacterium tuberculosis KZN 4207] Length = 1085 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ ++ +LT E ++L G+G +++IA +L +S TV +L KL +R+Q Sbjct: 1018 KRPATGWESLTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQL 1077 Query: 225 IAKAIR 230 A R Sbjct: 1078 AQAAAR 1083 >gi|317968139|ref|ZP_07969529.1| two component LuxR family transcriptional regulator [Synechococcus sp. CB0205] Length = 243 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Query: 165 KKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ ++A ++ T RE S LQL +G ++EIA +L S+ V Y+ K +R + Sbjct: 172 KQPTAAVKHEFTPREASVLQLVAEGMMNKEIARRLETSIRNVEKYVSRLFTKTGTASRTE 231 Query: 224 AIAKAIRFGYI 234 + A+ G + Sbjct: 232 LVRYALENGLV 242 >gi|312111451|ref|YP_003989767.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311216552|gb|ADP75156.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 211 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 16/113 (14%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQ--------VITDFLELFKKRSSAAR---NLTER 177 NG+++ T+E + +I+A +C + V + ++S R L+ R Sbjct: 99 NGFLLKTAE-----QQKLIQAIYSCMKGGMTIHEDVAAKMVPKLLQKSKQVRVDIPLSPR 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E +L G+G T++EIA +L LS+ TV ++ KL +R Q AI+ Sbjct: 154 ELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIK 206 >gi|172037420|ref|YP_001803921.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171698874|gb|ACB51855.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 244 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT +E L+L G + +IAE L ++V TV ++ S KL A +R QA +A+R G Sbjct: 182 SLTPKELEVLELIVAGCNNAQIAEALFVTVGTVKTHVRSILNKLCANDRTQAAVRALRSG 241 Query: 233 YI 234 + Sbjct: 242 LV 243 >gi|171741205|ref|ZP_02917012.1| hypothetical protein BIFDEN_00278 [Bifidobacterium dentium ATCC 27678] gi|283455432|ref|YP_003359996.1| two-component response regulator [Bifidobacterium dentium Bd1] gi|306823500|ref|ZP_07456875.1| two component system response regulator [Bifidobacterium dentium ATCC 27679] gi|309802650|ref|ZP_07696754.1| transcriptional regulator, LuxR family [Bifidobacterium dentium JCVIHMP022] gi|171276819|gb|EDT44480.1| hypothetical protein BIFDEN_00278 [Bifidobacterium dentium ATCC 27678] gi|283102066|gb|ADB09172.1| Two-component response regulator [Bifidobacterium dentium Bd1] gi|304553207|gb|EFM41119.1| two component system response regulator [Bifidobacterium dentium ATCC 27679] gi|308220714|gb|EFO77022.1| transcriptional regulator, LuxR family [Bifidobacterium dentium JCVIHMP022] Length = 230 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + Sbjct: 170 LSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTE 219 >gi|167584977|ref|ZP_02377365.1| two component transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 227 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 18/118 (15%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARN----L 174 VR G +GY++ S A+E I+ A GA T F E R +SAA + L Sbjct: 115 VRAG--ASGYLLKDSP----ASE-IVRAIGAVLAGHTFFSEGLAARMIHASAAASPLDRL 167 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T RE L +G +S++IA++ GLSV TV + + KLD I+ A+ I+F Sbjct: 168 TPRERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLD----IEGQAELIKFA 221 >gi|296876462|ref|ZP_06900513.1| LuxR family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] gi|296432455|gb|EFH18251.1| LuxR family transcriptional regulator [Streptococcus parasanguinis ATCC 15912] Length = 323 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L+LF S +LTERE L L + ++EIA++L LSV TV ++ + +KL+ Sbjct: 250 LDLF----SEKLHLTEREKEILPLLLEHKNNQEIADQLFLSVGTVKTHVHNIFIKLEITK 305 Query: 221 RIQ 223 R Q Sbjct: 306 RNQ 308 >gi|228993223|ref|ZP_04153144.1| Spore germination protein gerE [Bacillus pseudomycoides DSM 12442] gi|229006827|ref|ZP_04164460.1| Spore germination protein gerE [Bacillus mycoides Rock1-4] gi|229087050|ref|ZP_04219202.1| Spore germination protein gerE [Bacillus cereus Rock3-44] gi|228696243|gb|EEL49076.1| Spore germination protein gerE [Bacillus cereus Rock3-44] gi|228754449|gb|EEM03861.1| Spore germination protein gerE [Bacillus mycoides Rock1-4] gi|228766549|gb|EEM15191.1| Spore germination protein gerE [Bacillus pseudomycoides DSM 12442] Length = 74 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|227355895|ref|ZP_03840287.1| nitrate/nitrite response regulator [Proteus mirabilis ATCC 29906] gi|227163883|gb|EEI48785.1| nitrate/nitrite response regulator [Proteus mirabilis ATCC 29906] Length = 201 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEF--LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 NGY++ E L+L+ + + + +++L + S LT+RE LQ Sbjct: 95 NGYLLKECELDMLLLSLRKAVVGRPVYSEKVWQYIQLRQNYSDPLSALTKRELDVLQEVA 154 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G +++IAE L +S TV ++ + KL +R+ A Sbjct: 155 VGMKNKQIAENLFISEETVKVHIRNILKKLQVTSRLAA 192 >gi|215429206|ref|ZP_03427125.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289752415|ref|ZP_06511793.1| LuxR/UHPA family transcriptional regulator [Mycobacterium tuberculosis EAS054] gi|289693002|gb|EFD60431.1| LuxR/UHPA family transcriptional regulator [Mycobacterium tuberculosis EAS054] Length = 1085 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ ++ +LT E ++L G+G +++IA +L +S TV +L KL +R+Q Sbjct: 1018 KRPATGWESLTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQL 1077 Query: 225 IAKAIR 230 A R Sbjct: 1078 AQAAAR 1083 >gi|215402136|ref|ZP_03414317.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289744083|ref|ZP_06503461.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|289684611|gb|EFD52099.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 02_1987] Length = 1085 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ ++ +LT E ++L G+G +++IA +L +S TV +L KL +R+Q Sbjct: 1018 KRPATGWESLTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQL 1077 Query: 225 IAKAIR 230 A R Sbjct: 1078 AQAAAR 1083 >gi|194289452|ref|YP_002005359.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193223287|emb|CAQ69292.1| putative Prolyl aminopeptidase, LuxR DNA binding domain C_term [Cupriavidus taiwanensis LMG 19424] Length = 366 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 33/67 (49%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A LT RE ++L G + +IA L L TV ++ S KL+ NR QAI Sbjct: 295 RCPAFTALTRRERDIVELIAQGRDNAQIAAHLDLCEKTVRNHITSIFAKLEVENRGQAIV 354 Query: 227 KAIRFGY 233 A + G+ Sbjct: 355 LARKAGF 361 >gi|167966904|ref|ZP_02549181.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] Length = 1085 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ ++ +LT E ++L G+G +++IA +L +S TV +L KL +R+Q Sbjct: 1018 KRPATGWESLTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQL 1077 Query: 225 IAKAIR 230 A R Sbjct: 1078 AQAAAR 1083 >gi|153833495|ref|ZP_01986162.1| HTH-type transcriptional regulator MalT [Vibrio harveyi HY01] gi|148870270|gb|EDL69205.1| HTH-type transcriptional regulator MalT [Vibrio harveyi HY01] Length = 902 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTA 893 >gi|91223120|ref|ZP_01258386.1| transcriptional regulator MalT [Vibrio alginolyticus 12G01] gi|269965837|ref|ZP_06179932.1| malT regulatory protein, positive regulatory protein [Vibrio alginolyticus 40B] gi|91191933|gb|EAS78196.1| transcriptional regulator MalT [Vibrio alginolyticus 12G01] gi|269829572|gb|EEZ83811.1| malT regulatory protein, positive regulatory protein [Vibrio alginolyticus 40B] Length = 902 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIVTA 893 >gi|15839770|ref|NP_334807.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|13879898|gb|AAK44621.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis CDC1551] Length = 1092 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ ++ +LT E ++L G+G +++IA +L +S TV +L KL +R+Q Sbjct: 1025 KRPATGWESLTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQL 1084 Query: 225 IAKAIR 230 A R Sbjct: 1085 AQAAAR 1090 >gi|317016943|gb|ADU86016.1| putative LuxR transcriptional regulator [Dactylosporangium aurantiacum subsp. hamdenensis] Length = 861 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 28/48 (58%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +A+ LT RE +LA G + EIA++LG+SV TV L + KL Sbjct: 792 TASARLTAREREVCELAAAGLRNGEIAQRLGISVRTVGNLLQLSYTKL 839 >gi|241888907|ref|ZP_04776213.1| oxygen regulatory protein NreC [Gemella haemolysans ATCC 10379] gi|241864583|gb|EER68959.1| oxygen regulatory protein NreC [Gemella haemolysans ATCC 10379] Length = 206 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 7/70 (10%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +M N++ + A T F ELFK+ L+ERE + +GYT +I EKL Sbjct: 118 VMFKNDIYLNEKYA-----TIFYELFKEDKEI--ELSEREKEVGRYIVEGYTLTDIGEKL 170 Query: 199 GLSVHTVNAY 208 LSV TV+ Y Sbjct: 171 FLSVKTVDTY 180 >gi|182415183|ref|YP_001820249.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842397|gb|ACB76649.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 212 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L G +++EIA +L + T ++ + KL +R QAI A+R G Sbjct: 148 QLSPRELDVLKLVAKGRSNKEIAAELHVVEGTAKIHVANILTKLGVSDRTQAIVVAVRRG 207 Query: 233 YI 234 I Sbjct: 208 II 209 >gi|126724410|ref|ZP_01740253.1| transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] gi|126705574|gb|EBA04664.1| transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] Length = 203 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE + L+L +G +EIA +L +S V A L +A + A QA +KA R G Sbjct: 143 LTEAQIEALRLLSNGKRFKEIAHELNISESAVKARLRAAMTNIGAKTATQATSKAARLGL 202 Query: 234 I 234 + Sbjct: 203 L 203 >gi|31791563|ref|NP_854056.1| LuxR/UHPA family transcriptional regulator [Mycobacterium bovis AF2122/97] gi|31617149|emb|CAD93256.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (PROBABLY LUXR/UHPA-FAMILY) [Mycobacterium bovis AF2122/97] Length = 1085 Score = 37.0 bits (84), Expect = 2.2, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ ++ +LT E ++L G+G +++IA +L +S TV +L KL +R+Q Sbjct: 1018 KRPATGWESLTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQL 1077 Query: 225 IAKAIR 230 A R Sbjct: 1078 AQAAAR 1083 >gi|332289326|ref|YP_004420178.1| response regulator FixJ [Gallibacterium anatis UMN179] gi|330432222|gb|AEC17281.1| response regulator FixJ [Gallibacterium anatis UMN179] Length = 193 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+E+E L L +G +++IAE+L +SV TV + K++A N + I KA Sbjct: 135 LSEKEKEVLALIIEGNINKQIAERLNISVRTVEVHRSHIMEKMNAKNVAELIRKA 189 >gi|302532622|ref|ZP_07284964.1| two-component system response regulator [Streptomyces sp. C] gi|302441517|gb|EFL13333.1| two-component system response regulator [Streptomyces sp. C] Length = 226 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L L DG ++ +I ++ LS TV ++ S KL +R+QA A R G Sbjct: 153 LSDRERDVLVLIADGLSNADIGTRIHLSQGTVKDHVSSILTKLRVTSRVQAALLAERAGL 212 Query: 234 IC 235 + Sbjct: 213 LS 214 >gi|295839793|ref|ZP_06826726.1| two-component system response regulator [Streptomyces sp. SPB74] gi|295827655|gb|EDY44664.2| two-component system response regulator [Streptomyces sp. SPB74] Length = 206 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +++ S+ + LTERE L+L G ++ EIA L +S TV ++G KL +R+ Sbjct: 149 EQQPSSLQTLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRV 206 >gi|294637119|ref|ZP_06715430.1| DNA-binding response regulator, LuxR family [Edwardsiella tarda ATCC 23685] gi|291089690|gb|EFE22251.1| DNA-binding response regulator, LuxR family [Edwardsiella tarda ATCC 23685] Length = 217 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSKLLEKINASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|256783882|ref|ZP_05522313.1| two-component regulator [Streptomyces lividans TK24] gi|289767766|ref|ZP_06527144.1| two-component system response regulator [Streptomyces lividans TK24] gi|289697965|gb|EFD65394.1| two-component system response regulator [Streptomyces lividans TK24] Length = 222 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIA L +S HTV ++ + KL +R+QA+ A G Sbjct: 157 LTAREVETLRLLARGLSNSEIATTLFVSEHTVKTHVSNVLGKLGLRDRVQAVICAYETGL 216 Query: 234 IC 235 + Sbjct: 217 VA 218 >gi|302346377|ref|YP_003814675.1| transcriptional regulator, LuxR family [Prevotella melaninogenica ATCC 25845] gi|302151055|gb|ADK97316.1| transcriptional regulator, LuxR family [Prevotella melaninogenica ATCC 25845] Length = 214 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+ ET L+ G T+ EIAEK S HTVN + + KL N +AI A+R G Sbjct: 147 LTKTETEILKEIALGATTREIAEKRFSSFHTVNTHRKNIFRKLGVNNVHEAIRYAMRSGL 206 Query: 234 I 234 + Sbjct: 207 V 207 >gi|251792676|ref|YP_003007402.1| transcriptional regulator MalT [Aggregatibacter aphrophilus NJ8700] gi|247534069|gb|ACS97315.1| HTH-type transcriptional regulator MalT [Aggregatibacter aphrophilus NJ8700] Length = 905 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 33/53 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE L L GY++E+I+++L ++ T+ ++ + K+ NR +AIA Sbjct: 841 LTQREWQVLGLIYSGYSNEQISDELQVATTTIKTHIRNLYQKIGVANRNEAIA 893 >gi|203288222|ref|YP_002223237.1| hypothetical protein BRE_804 [Borrelia recurrentis A1] gi|201085442|gb|ACH95016.1| uncharacterized conserved protein [Borrelia recurrentis A1] Length = 1463 Score = 37.0 bits (84), Expect = 2.2, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%) Query: 64 IPNILIETYGDDFLFHF--NSGLLPIIWQSIQEETVIES----SGQLSVRLEGGLLPFAG 117 I N +++T DDFLF+F N GL +++ + E ++ S G+ LE G + F+ Sbjct: 180 INNFILKTIDDDFLFNFVVNFGLPEVLYPDVNSENIVNSVFYFEGKFKKDLEDGYINFSF 239 Query: 118 IAF 120 + F Sbjct: 240 LEF 242 >gi|332662577|ref|YP_004445365.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332331391|gb|AEE48492.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 231 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R LT+RE L L + YT++EIAE+L +S+ TV + + +K+ N + +AI Sbjct: 150 RRLTKREQQILGLIVEEYTNQEIAEELFISIPTVETHRKNLILKMGVRNTAGLVREAI 207 >gi|311896597|dbj|BAJ29005.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 224 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+L G ++ EIA +L +S HTV ++ + KL +R+ A+ A G Sbjct: 155 SLTGREAETLKLVARGMSNAEIAAELVVSEHTVKTHVSNLLQKLGLRDRVHAVVFAYEAG 214 Query: 233 YI 234 + Sbjct: 215 AV 216 >gi|312961526|ref|ZP_07776027.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311284205|gb|EFQ62785.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 215 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 36/67 (53%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + AA LTERE L+ GY+++ I KLG++ TV ++ + KL +R+ Sbjct: 142 LRSPQPHAAVELTERERQVLKTIAGGYSNKVIGHKLGITEGTVKVHVKNLLHKLGLRSRV 201 Query: 223 QAIAKAI 229 +A A+ Sbjct: 202 EAAVWAM 208 >gi|257056288|ref|YP_003134120.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586160|gb|ACU97293.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 239 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ S L+E+E + L L G+G T+ EIA +L L+ TV Y+ KL R QA Sbjct: 142 REESDPVSGLSEQERAVLDLIGEGLTNREIAARLYLAEKTVKNYVSRLLGKLGMQRRTQA 201 >gi|219556202|ref|ZP_03535278.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis T17] Length = 992 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ ++ +LT E ++L G+G +++IA +L +S TV +L KL +R+Q Sbjct: 925 KRPATGWESLTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQL 984 Query: 225 IAKAIR 230 A R Sbjct: 985 AQAAAR 990 >gi|206562366|ref|YP_002233129.1| LuxR/PAS superfamily regulatory protein [Burkholderia cenocepacia J2315] gi|198038406|emb|CAR54363.1| LuxR/PAS superfamily regulatory protein [Burkholderia cenocepacia J2315] Length = 510 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA +LGL+ +TV ++ + KLD +R +AI A G Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 233 YI 234 + Sbjct: 490 IV 491 >gi|295838502|ref|ZP_06825435.1| two-component system response regulator [Streptomyces sp. SPB74] gi|197699551|gb|EDY46484.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 234 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 31/49 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L G++ +EIA++L +SV TV +++ + KL NR Sbjct: 173 KLTQRERDVLRLIARGHSYKEIAKELFISVKTVESHVSAVLRKLQLSNR 221 >gi|163751528|ref|ZP_02158750.1| DNA-binding nitrate/nitrite response regulator [Shewanella benthica KT99] gi|161328536|gb|EDP99689.1| DNA-binding nitrate/nitrite response regulator [Shewanella benthica KT99] Length = 209 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 10/115 (8%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKK---RSSAARNLTE 176 VR G +GY++ +E +L ++ ++ H + + D+L K NLT Sbjct: 97 VRAG--ADGYLLKDTEPDLLLEKLKQAMQGHRVISESVEDYLYELKDAIDEKDWIDNLTP 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE LQL G ++ I+E+L +S TV ++ + K +A +R + A+R+ Sbjct: 155 RELQILQLVAQGMSNRTISEQLHISEGTVKVHVKNLLRKANAKSRTEM---AVRY 206 >gi|186471227|ref|YP_001862545.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184197536|gb|ACC75499.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 213 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 56/117 (47%), Gaps = 18/117 (15%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARN----L 174 VR G +GYV+ S II A GA + T F E R +SA R+ L Sbjct: 100 VRAG--ASGYVLKDS-----PGAEIIRAIGAVLEGKTFFSEGLSARLIHASATRDPIERL 152 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T RE L G +S++IA++ GLSV TV + + KL+ I+ A+ I+F Sbjct: 153 TPRERDILDQLAQGLSSKQIAQRNGLSVRTVETHRLNLKRKLE----IEGQAELIKF 205 >gi|170736431|ref|YP_001777691.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|254249144|ref|ZP_04942464.1| PAS/PAC domain [Burkholderia cenocepacia PC184] gi|124875645|gb|EAY65635.1| PAS/PAC domain [Burkholderia cenocepacia PC184] gi|169818619|gb|ACA93201.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 510 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA +LGL+ +TV ++ + KLD +R +AI A G Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 233 YI 234 + Sbjct: 490 IV 491 >gi|330973884|gb|EGH73950.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 247 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ELF + + L+ RE L+ G EIAE +S TV ++ + + KL+ Sbjct: 177 ELFPQPTRC--KLSSREIGVLKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTA 234 Query: 222 IQAIAKAIRFGYI 234 QA+ KAI G + Sbjct: 235 KQAVYKAINMGMV 247 >gi|310644124|ref|YP_003948882.1| response regulator (chey-like receiver domain and hth-type DNA-binding domain) [Paenibacillus polymyxa SC2] gi|309249074|gb|ADO58641.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Paenibacillus polymyxa SC2] Length = 216 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT++E L+ G+ S+EIA +G+S TV A+L + KL +R +A+A ++ G Sbjct: 154 LTDKERHILKSVAHGFKSKEIAFDMGISERTVKAHLTNIYNKLGVDSRSEAVAVSLERGI 213 Query: 234 I 234 + Sbjct: 214 L 214 >gi|298244448|ref|ZP_06968254.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551929|gb|EFH85794.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1024 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE L L G + EIA +L + TV A++ + KL+ +R+QAIA+A Sbjct: 964 LSWREREVLYLMATGRKNREIARELFVVTGTVKAHINNIYRKLNVNSRVQAIARA 1018 >gi|291452585|ref|ZP_06591975.1| two-component system response regulator [Streptomyces albus J1074] gi|291355534|gb|EFE82436.1| two-component system response regulator [Streptomyces albus J1074] Length = 220 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTE+E L L G+G T+ I E+L L+ T+ Y+ + KL R QA A R Sbjct: 156 GLTEQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSALLAKLGMERRSQAAAYVARM 214 >gi|269139679|ref|YP_003296380.1| positive response regulator of capsular synthesis [Edwardsiella tarda EIB202] gi|267985340|gb|ACY85169.1| positive response regulator of capsular synthesis [Edwardsiella tarda EIB202] gi|304559548|gb|ADM42212.1| DNA-binding capsular synthesis response regulator RcsB [Edwardsiella tarda FL6-60] Length = 217 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSKLLEKINASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|253998423|ref|YP_003050486.1| two component LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|313200498|ref|YP_004039156.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|253985102|gb|ACT49959.1| two component transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] gi|312439814|gb|ADQ83920.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 314 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 65/168 (38%), Gaps = 44/168 (26%) Query: 87 IIWQS----------IQEETVIESSGQLSVRL--------EGGLLPFAGIAFPVRLGFHK 128 I+WQ+ EET+ E S + L EGG+ AG+ P Sbjct: 159 IVWQTPLARQWMERYFGEETMPEYSATMPPELVRWLKELFEGGI---AGLNKPTLTIPQG 215 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--------NLTERETS 180 +G +IFT ++E VI L + S AA+ LT RE+ Sbjct: 216 SGRLIFT----------LVEIDNDDQWVI-----LLHEESDAAKIDALMTTFKLTRRESE 260 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L A G T+ +I + LG S T+N +L KL R A A A Sbjct: 261 VLYWAMQGKTNRDIGDILGTSPRTINKHLEHVFTKLGVETRTAASALA 308 >gi|253573655|ref|ZP_04850998.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847183|gb|EES75188.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 215 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 33/70 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ S LT RE L G T+ EIA L +S TV +L + KL NR+Q Sbjct: 142 RRTSGEQPPLTAREREILGWVAQGMTNREIAGVLHISDQTVKNHLKNILQKLHLENRVQL 201 Query: 225 IAKAIRFGYI 234 A+ G+I Sbjct: 202 TRYALEQGWI 211 >gi|229196490|ref|ZP_04323234.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228586846|gb|EEK44920.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 214 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 36/67 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K+ + LT+RE L+ G +++EIA L ++ TV ++ + KL+ +R QA Sbjct: 141 KKENPFSMLTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAA 200 Query: 226 AKAIRFG 232 A++ G Sbjct: 201 LYAVKHG 207 >gi|256374257|ref|YP_003097917.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918560|gb|ACU34071.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 209 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTE+E L L G+G ++ +IAE+L ++ TV ++ + KL R QA A R G Sbjct: 149 TLTEQERRVLSLIGEGLSNRQIAERLFVAEKTVKNHVTAVLSKLGMERRTQAAAWVARRG 208 >gi|221197390|ref|ZP_03570437.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] gi|221204064|ref|ZP_03577082.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221176230|gb|EEE08659.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221183944|gb|EEE16344.1| transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] Length = 510 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA +LGL+ +TV ++ + KLD +R +AI A G Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 233 YI 234 + Sbjct: 490 IV 491 >gi|166012217|ref|ZP_02233115.1| HTH-type transcriptional regulator MalT (ATP-dependent transcriptionalactivator malT) [Yersinia pestis biovar Antiqua str. E1979001] gi|165988883|gb|EDR41184.1| HTH-type transcriptional regulator MalT (ATP-dependent transcriptionalactivator malT) [Yersinia pestis biovar Antiqua str. E1979001] gi|262364242|gb|ACY60799.1| maltose regulon positive regulatory protein [Yersinia pestis D182038] Length = 796 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF-- 231 LT+RE L L GY++++IA +L ++ T+ ++ + KL +R +A+ +A R Sbjct: 732 LTQREWQVLGLIYSGYSNDQIANELDVAATTIKTHIRNLYQKLGVAHRQEAVQQAQRLLQ 791 Query: 232 --GYI 234 GY+ Sbjct: 792 MMGYV 796 >gi|54309406|ref|YP_130426.1| response regulator [Photobacterium profundum SS9] gi|90413708|ref|ZP_01221697.1| putative transcriptional regulator, LuxR family protein [Photobacterium profundum 3TCK] gi|46913842|emb|CAG20624.1| putative transcriptional regulator, LuxR family [Photobacterium profundum SS9] gi|90325329|gb|EAS41823.1| putative transcriptional regulator, LuxR family protein [Photobacterium profundum 3TCK] Length = 214 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ERE + + G +I+E+L LS TVN+Y KLD ++ AIR Sbjct: 147 KDLSERELQIMMMITKGQKVTDISEQLSLSPKTVNSYRYRLFSKLDIGGDVELTHLAIRH 206 Query: 232 GYI 234 G + Sbjct: 207 GML 209 >gi|323493301|ref|ZP_08098425.1| response regulator [Vibrio brasiliensis LMG 20546] gi|323312464|gb|EGA65604.1| response regulator [Vibrio brasiliensis LMG 20546] Length = 214 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE + + G +I+E+L LS TVN+Y KLD ++ AIR G Sbjct: 148 DLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLDISGDVELTHLAIRHG 207 Query: 233 YI 234 I Sbjct: 208 MI 209 >gi|302036415|ref|YP_003796737.1| LuxR family response regulator (fragment) [Candidatus Nitrospira defluvii] gi|300604479|emb|CBK40811.1| Response regulator, LuxR family (fragment) [Candidatus Nitrospira defluvii] Length = 106 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G T+ IAE+L +S+ T A+ + KL N Q + A+ G Sbjct: 41 LTPREQEILQLVWAGLTNRTIAEQLHISIKTAEAHRANMMKKLRVSNIAQLLKTALEEGL 100 Query: 234 IC 235 + Sbjct: 101 LA 102 >gi|312199930|ref|YP_004019991.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231266|gb|ADP84121.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 214 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTE E L+L DG + ++A +L LS TV + + KL A +R +A+A+A G Sbjct: 148 QLTEAEVRMLELLADGLANGQLAARLYLSEKTVRNRVSTILAKLGAGSRAEAVARARDAG 207 Query: 233 Y 233 + Sbjct: 208 F 208 >gi|291303089|ref|YP_003514367.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572309|gb|ADD45274.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ E+A +L LS TV ++ KL +R+QA+ A G Sbjct: 156 LTPRELEVLRLLAQGLSNAELAARLHLSEATVKTHVARILAKLQLRDRVQAVIVAYETGL 215 Query: 234 IC 235 + Sbjct: 216 VS 217 >gi|227015848|gb|ACP17945.1| putative two-component response regulator [Pseudomonas nitroreducens] Length = 208 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 37/59 (62%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L++RE + LQ +GY+++EI+E++ +S TV+ Y +KL+A + + I A R Sbjct: 146 QRLSDREMAVLQYLANGYSNKEISEQMFISNKTVSTYKTRLLLKLNAHSLVDLIEFAKR 204 >gi|226304145|ref|YP_002764103.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183260|dbj|BAH31364.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 217 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L + G + IAE+L L TV ++ S KL NR+ A A R G Sbjct: 155 SLTEREREVLTILATGAANSVIAERLYLGETTVKTHISSLFAKLGVPNRVSASLIAFRCG 214 Query: 233 YI 234 + Sbjct: 215 LV 216 >gi|126652652|ref|ZP_01724813.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus sp. B14905] gi|169829490|ref|YP_001699648.1| germination protein [Lysinibacillus sphaericus C3-41] gi|299535535|ref|ZP_07048856.1| germination protein [Lysinibacillus fusiformis ZC1] gi|126590501|gb|EAZ84619.1| transcriptional regulator of spore coat protein (spore germination protein) [Bacillus sp. B14905] gi|168993978|gb|ACA41518.1| Germination protein [Lysinibacillus sphaericus C3-41] gi|298728735|gb|EFI69289.1| germination protein [Lysinibacillus fusiformis ZC1] Length = 73 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L T+ +IAE+LG+S TV ++ + KL NR QA+ + +R Sbjct: 10 LTNREREIFALLLAEKTTRDIAEQLGISEKTVRNHISNTIQKLGVTNRSQALIELLRL 67 >gi|118473768|ref|YP_890456.1| two-component system, regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118175055|gb|ABK75951.1| two-component system, regulatory protein [Mycobacterium smegmatis str. MC2 155] Length = 216 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 35/68 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ LT+RE L+L G ++ +I EKL +S T ++ + KLD R +A+ Sbjct: 149 RTEPREQLTDREIEVLRLLAAGLSNNKIGEKLFISATTAKFHVSNIMRKLDVSRRAEAVY 208 Query: 227 KAIRFGYI 234 A + G I Sbjct: 209 AASKRGLI 216 >gi|254254816|ref|ZP_04948133.1| DNA-binding response regulator [Burkholderia dolosa AUO158] gi|124899461|gb|EAY71304.1| DNA-binding response regulator [Burkholderia dolosa AUO158] Length = 214 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 18/118 (15%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARN----L 174 VR G +GY++ S A+E I+ A GA T F E R +SAA + L Sbjct: 102 VRAG--ASGYLLKDSP----ASE-IVRAIGAVLAGQTFFSEGLAARMIQASAAASPLDRL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T RE L +G +S++IA++ GLSV TV + + KLD I+ A+ I+F Sbjct: 155 TPRERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLD----IEGQAELIKFA 208 >gi|254254914|ref|ZP_04948231.1| hypothetical protein BDAG_04236 [Burkholderia dolosa AUO158] gi|124899559|gb|EAY71402.1| hypothetical protein BDAG_04236 [Burkholderia dolosa AUO158] Length = 510 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA +LGL+ +TV ++ + KLD +R +AI A G Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 233 YI 234 + Sbjct: 490 IV 491 >gi|115523030|ref|YP_779941.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115516977|gb|ABJ04961.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 221 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 9/128 (7%) Query: 117 GIAFPVR-LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLEL-FKKR 167 G+ +R L +GYV+ S L + G Y QVI + ++R Sbjct: 87 GVECAIRALDSGASGYVLKGSSSDELIQAITCVKSGETYITRTFATQVIAALRDTSLRRR 146 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ A L+ RE ++L G T++EIA + +S TV Y+ KL NR++ + Sbjct: 147 AAEAVKLSIREQQIVRLLLKGKTNKEIAHAISISDKTVKHYMTILMQKLQVRNRLEVVIA 206 Query: 228 AIRFGYIC 235 A + C Sbjct: 207 AQKLDEAC 214 >gi|116691570|ref|YP_837103.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|116649570|gb|ABK10210.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] Length = 510 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA +LGL+ +TV ++ + KLD +R +AI A G Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 233 YI 234 + Sbjct: 490 IV 491 >gi|300856053|ref|YP_003781037.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300436168|gb|ADK15935.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 224 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 KK S+ NL++RE L GY+++EI ++L +S TV Y + K++ +R+ A Sbjct: 146 KKASNILDNLSKREIEVLSKISKGYSNKEIGKQLYISEKTVKNYATNLFKKINVDDRVHA 205 Query: 225 IAKAI 229 AI Sbjct: 206 AIVAI 210 >gi|284009350|emb|CBA76534.1| two-component system, NarL family, captular synthesis response regulator [Arsenophonus nasoniae] Length = 215 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSKLLEKVNANGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|311743852|ref|ZP_07717658.1| two component system response regulator [Aeromicrobium marinum DSM 15272] gi|311312982|gb|EFQ82893.1| two component system response regulator [Aeromicrobium marinum DSM 15272] Length = 218 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 36/74 (48%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LE + LTERE L G T+ EIA++L +++ TV ++ + KL A N Sbjct: 143 LERATPPAQPIEPLTEREEEVLLTVARGRTNAEIADELHITLSTVKTHVAALMNKLGARN 202 Query: 221 RIQAIAKAIRFGYI 234 R++ A G + Sbjct: 203 RVEVAMWAYETGRV 216 >gi|50955675|ref|YP_062963.1| LuxR family transcriptional regulator [Leifsonia xyli subsp. xyli str. CTCB07] gi|50952157|gb|AAT89858.1| transcriptional regulator, LuxR family [Leifsonia xyli subsp. xyli str. CTCB07] Length = 749 Score = 37.0 bits (84), Expect = 2.3, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT RE +L +G ++ EIA +L LSV TV ++ + VKL +R IA Sbjct: 685 AEDGLTRREREIRRLVREGLSNREIALRLTLSVRTVEGHVQNTLVKLGYESRKHLIANES 744 Query: 230 R 230 R Sbjct: 745 R 745 >gi|78063527|ref|YP_373435.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77971412|gb|ABB12791.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 514 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA +LGL+ +TV ++ + KLD +R +AI A G Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 233 YI 234 + Sbjct: 490 IV 491 >gi|86140638|ref|ZP_01059197.1| DNA-binding response regulator, LuxR family protein [Leeuwenhoekiella blandensis MED217] gi|85832580|gb|EAQ51029.1| DNA-binding response regulator, LuxR family protein [Leeuwenhoekiella blandensis MED217] Length = 212 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 9/107 (8%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LTERETSC 181 GY+ +E + V+ A G Y + + +E+ SA N L+ RET Sbjct: 99 GYIGKIAETQTVHKAVVQVARGGIY-LNNNLVEMLSNTDSAQNNSLAYRYKKLSTRETEV 157 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L + G +++IAE L ++ TV+ Y KLDA + + I +A Sbjct: 158 LNMLSSGKRNKDIAESLDINEKTVSTYKTRLLKKLDAGSLAELIQQA 204 >gi|330836692|ref|YP_004411333.1| two component transcriptional regulator, LuxR family [Spirochaeta coccoides DSM 17374] gi|329748595|gb|AEC01951.1| two component transcriptional regulator, LuxR family [Spirochaeta coccoides DSM 17374] Length = 213 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 LT RE L G GY + +IA +L LSV T+NA+ Sbjct: 151 LTNRELEIFSLIGKGYGASDIATRLNLSVKTINAH 185 >gi|227894641|ref|ZP_04012446.1| response regulator [Lactobacillus ultunensis DSM 16047] gi|227863536|gb|EEJ70957.1| response regulator [Lactobacillus ultunensis DSM 16047] Length = 223 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ +NL++ E +Q G G T++EIA+KL LS TV Y+ L +R Q Sbjct: 151 TNEVKNLSKSEWQVIQQVGLGRTNKEIAQKLFLSEGTVRNYISKILSCLQLRDRTQLAIW 210 Query: 228 AIRFGYI 234 A++ G I Sbjct: 211 AVQKGVI 217 >gi|170769400|ref|ZP_02903853.1| regulatory protein SdiA [Escherichia albertii TW07627] gi|170121724|gb|EDS90655.1| regulatory protein SdiA [Escherichia albertii TW07627] Length = 228 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 167 HFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATG 226 Query: 233 YI 234 I Sbjct: 227 LI 228 >gi|167621701|ref|YP_001672209.1| ATP-dependent transcription regulator LuxR [Caulobacter sp. K31] gi|167351824|gb|ABZ74550.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Caulobacter sp. K31] Length = 891 Score = 37.0 bits (84), Expect = 2.3, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 38/68 (55%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS + LT +E + LQ +G ++ +IA K +S TV ++ + KL NRIQA+ Sbjct: 823 RSETSVVLTRKELAMLQRIREGLSNRDIAIKHRISEDTVKWHIRNLFAKLKVKNRIQALM 882 Query: 227 KAIRFGYI 234 ++ R G + Sbjct: 883 ESERIGIL 890 >gi|328880209|emb|CCA53448.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 200 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +T RE L G T+ EIA+ L +S+ TV +L S KL A NR++ Sbjct: 136 VTAREEQVLLAVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVE 185 >gi|292670350|ref|ZP_06603776.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541] gi|292648081|gb|EFF66053.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541] Length = 223 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT RE L G+++++I + LGLS TV +L S KL +R QA+ Sbjct: 155 SRGERLTPREMDVLGCIAKGFSNQDIGKALGLSEKTVKNHLTSIFHKLKVNDRTQALVYV 214 Query: 229 IR 230 ++ Sbjct: 215 LK 216 >gi|269102848|ref|ZP_06155545.1| BarA-associated response regulator UvrY [Photobacterium damselae subsp. damselae CIP 102761] gi|268162746|gb|EEZ41242.1| BarA-associated response regulator UvrY [Photobacterium damselae subsp. damselae CIP 102761] Length = 214 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ERE + + G +I+E+L LS TVN+Y KLD ++ AIR Sbjct: 147 KDLSERELQIMMMITKGQKVTDISEQLSLSPKTVNSYRYRLFNKLDISGDVELTHLAIRH 206 Query: 232 GYI 234 G + Sbjct: 207 GML 209 >gi|221210485|ref|ZP_03583465.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD1] gi|221169441|gb|EEE01908.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD1] Length = 214 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 59/118 (50%), Gaps = 18/118 (15%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARN----L 174 VR G +GY++ S A+E I+ A GA T F E R +SAA + L Sbjct: 102 VRAG--ASGYLLKDSP----ASE-IVRAIGAVLAGQTFFSEGLAARMIQASAAASPLDRL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T RE L +G +S++IA++ GLSV TV + + KLD I+ A+ I+F Sbjct: 155 TPRERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLD----IEGQAELIKFA 208 >gi|186476730|ref|YP_001858200.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184193189|gb|ACC71154.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 293 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Query: 161 LELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LELF KRS+ L+ R+ ++ G T++ IA LG+S TV +L + +L A Sbjct: 148 LELFATPKRSNLTGGLSPRQEQIMRCVHMGSTNKMIARALGISEGTVKIHLATIFQQLGA 207 Query: 219 VNRIQAIA 226 NR A+A Sbjct: 208 PNRAAAVA 215 >gi|66044867|ref|YP_234708.1| LuxR transcriptional regulator [Pseudomonas syringae pv. syringae B728a] gi|33413265|emb|CAD97431.1| AHL regulator [Pseudomonas syringae pv. syringae] gi|63255574|gb|AAY36670.1| regulatory protein, LuxR:Autoinducer-binding [Pseudomonas syringae pv. syringae B728a] Length = 247 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ELF + + L+ RE L+ G EIAE +S TV ++ + + KL+ Sbjct: 177 ELFPQPTRC--KLSSREIGVLKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTA 234 Query: 222 IQAIAKAIRFGYI 234 QA+ KAI G + Sbjct: 235 KQAVYKAINMGMV 247 >gi|11465809|ref|NP_053953.1| ORF29 [Porphyra purpurea] gi|1723332|sp|P51343|YCF29_PORPU RecName: Full=Probable transcriptional regulator ycf29 gi|1276809|gb|AAC08229.1| hypothetical chloroplast ORF 29 [Porphyra purpurea] Length = 209 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 29/57 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE S L L DG T++EIA L S+ V Y+ K + NR + +I+ Sbjct: 146 LTPREKSILNLVIDGLTNKEIAVILDTSIRNVEKYVSRLLQKTNTRNRTLLVKYSIK 202 >gi|271966818|ref|YP_003341014.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509993|gb|ACZ88271.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 879 Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 AA LT ++ ++ DG T+ E+A +L LS TV +L + KLD +R++ + Sbjct: 820 AAEKLTAQQFQIARIVADGATNREVAARLYLSPRTVEHHLRNIFAKLDIRSRVELV 875 >gi|239929732|ref|ZP_04686685.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438058|ref|ZP_06577448.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340953|gb|EFE67909.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+ RE L L G G ++ EIA +L L TV AY+ + +L NR+QA Sbjct: 159 LSPREREVLGLVGAGLSNPEIAARLHLVEGTVKAYVSAVLDRLGVRNRVQA 209 >gi|254361813|ref|ZP_04977948.1| tetrathionate reductase regulon response regulator [Mannheimia haemolytica PHL213] gi|153093348|gb|EDN74344.1| tetrathionate reductase regulon response regulator [Mannheimia haemolytica PHL213] Length = 215 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 29/46 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LTE+E + + L G+T+++IA+KL +SV TV + + K+ A Sbjct: 134 KLTEKERNLVPLIMQGFTNKQIADKLAISVRTVEVHRANVMEKMQA 179 >gi|161519735|ref|YP_001583162.1| two component LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189354086|ref|YP_001949713.1| two-component system nitrate/nitrite response regulator [Burkholderia multivorans ATCC 17616] gi|221197639|ref|ZP_03570686.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD2M] gi|221204312|ref|ZP_03577330.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD2] gi|160343785|gb|ABX16870.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189338108|dbj|BAG47177.1| two-component system nitrate/nitrite response regulator [Burkholderia multivorans ATCC 17616] gi|221176478|gb|EEE08907.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD2] gi|221184193|gb|EEE16593.1| DNA-binding response regulator, LuxR family [Burkholderia multivorans CGD2M] Length = 214 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 18/117 (15%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARN----L 174 VR G +GY++ S A+E I+ A GA T F E R +SAA + L Sbjct: 102 VRAG--ASGYLLKDSP----ASE-IVRAIGAVLAGQTFFSEGLAARMIQASAAASPLDRL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T RE L +G +S++IA++ GLSV TV + + KLD I+ A+ I+F Sbjct: 155 TPRERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLD----IEGQAELIKF 207 >gi|52081342|ref|YP_080133.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52786720|ref|YP_092549.1| GerE [Bacillus licheniformis ATCC 14580] gi|157693255|ref|YP_001487717.1| spore germination protein E [Bacillus pumilus SAFR-032] gi|194017341|ref|ZP_03055953.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|221310782|ref|ZP_03592629.1| spore germination protein E [Bacillus subtilis subsp. subtilis str. 168] gi|221315107|ref|ZP_03596912.1| spore germination protein E [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320025|ref|ZP_03601319.1| spore germination protein E [Bacillus subtilis subsp. subtilis str. JH642] gi|221324308|ref|ZP_03605602.1| spore germination protein E [Bacillus subtilis subsp. subtilis str. SMY] gi|255767655|ref|NP_390719.2| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|296331611|ref|ZP_06874080.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675430|ref|YP_003867102.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|311069333|ref|YP_003974256.1| transcriptional regulator [Bacillus atrophaeus 1942] gi|319647250|ref|ZP_08001472.1| spore germination protein gerE [Bacillus sp. BT1B_CT2] gi|321312374|ref|YP_004204661.1| transcriptional regulator [Bacillus subtilis BSn5] gi|251757272|sp|P11470|GERE_BACSU RecName: Full=Spore germination protein gerE gi|13786948|pdb|1FSE|A Chain A, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786949|pdb|1FSE|B Chain B, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786950|pdb|1FSE|C Chain C, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786951|pdb|1FSE|D Chain D, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786952|pdb|1FSE|E Chain E, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|13786953|pdb|1FSE|F Chain F, Crystal Structure Of The Bacillus Subtilis Regulatory Protein Gere gi|2924355|emb|CAA11701.1| GerE [Bacillus subtilis] gi|52004553|gb|AAU24495.1| transcriptional regulator [Bacillus licheniformis ATCC 14580] gi|52349222|gb|AAU41856.1| GerE [Bacillus licheniformis ATCC 14580] gi|157682013|gb|ABV63157.1| spore germination protein E [Bacillus pumilus SAFR-032] gi|194011209|gb|EDW20779.1| conserved domain protein [Bacillus pumilus ATCC 7061] gi|225185283|emb|CAB14801.2| transcriptional regulator [Bacillus subtilis subsp. subtilis str. 168] gi|291485272|dbj|BAI86347.1| transcriptional regulator [Bacillus subtilis subsp. natto BEST195] gi|296151206|gb|EFG92086.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413674|gb|ADM38793.1| transcriptional regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|310869850|gb|ADP33325.1| transcriptional regulator [Bacillus atrophaeus 1942] gi|317390597|gb|EFV71402.1| spore germination protein gerE [Bacillus sp. BT1B_CT2] gi|320018648|gb|ADV93634.1| transcriptional regulator [Bacillus subtilis BSn5] Length = 74 Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|115526486|ref|YP_783397.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520433|gb|ABJ08417.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 247 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 35/58 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT + L +G ++++IA++ G+S++TV + + + KL+ NR QA A+R Sbjct: 179 DLTRPQIELLSYLANGLSNQQIAKERGMSINTVKSQVANVIQKLNVANRTQAALFAVR 236 >gi|304439372|ref|ZP_07399284.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372154|gb|EFM25748.1| response regulator [Peptoniphilus duerdenii ATCC BAA-1640] Length = 208 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + + +LT RE L+L G ++EIAE LG+S++TV ++ K +R Q +A Sbjct: 139 TKSTDLTPREIQVLRLLTTGVGNDEIAESLGISLNTVKTHIQHLLDKTGFTSRTQLAIQA 198 Query: 229 IRFGYI 234 G++ Sbjct: 199 RVTGFV 204 >gi|237798495|ref|ZP_04586956.1| DNA-binding response regulator CorR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021346|gb|EGI01403.1| DNA-binding response regulator CorR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 81 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 2/75 (2%) Query: 162 ELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 EL + R+ A+ LT R+ L L G T++EIA +L S HTV +++ + L A Sbjct: 6 ELPEPRTIASTPLTLTSRQRQVLGLLCQGLTNKEIASQLWRSEHTVRSHVQAILTILQAS 65 Query: 220 NRIQAIAKAIRFGYI 234 R +A A R G + Sbjct: 66 CRTEAADTARRLGLV 80 >gi|226365679|ref|YP_002783462.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244169|dbj|BAH54517.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 219 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 160 FLELFKKRSSAAR--------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 L+ F RS+A +LT RE L+L GYT EIAE+L +SV TV + + Sbjct: 137 VLDSFTGRSNAPEPQLDPELDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASN 196 Query: 212 ATVKLDAVNR 221 K NR Sbjct: 197 VLRKTQQSNR 206 >gi|254521823|ref|ZP_05133878.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14] gi|219719414|gb|EED37939.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14] Length = 230 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 28/61 (45%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+ G EIA LGLS TV +L A +L QA+ A R G Sbjct: 168 LSTREREVLRWVAAGRRQAEIATTLGLSARTVENHLRHARQRLGVATTAQAVRAATRRGE 227 Query: 234 I 234 I Sbjct: 228 I 228 >gi|206973784|ref|ZP_03234702.1| DNA-binding response regulator, LuxR family [Bacillus cereus H3081.97] gi|222095860|ref|YP_002529917.1| response regulator [Bacillus cereus Q1] gi|206747940|gb|EDZ59329.1| DNA-binding response regulator, LuxR family [Bacillus cereus H3081.97] gi|221239918|gb|ACM12628.1| response regulator [Bacillus cereus Q1] Length = 213 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 36/67 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K+ + LT+RE L+ G +++EIA L ++ TV ++ + KL+ +R QA Sbjct: 141 KKENPFSMLTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAA 200 Query: 226 AKAIRFG 232 A++ G Sbjct: 201 LYAVKHG 207 >gi|325520456|gb|EGC99559.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49] Length = 510 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA +LGL+ +TV ++ + KLD +R +AI A G Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 233 YI 234 + Sbjct: 490 IV 491 >gi|256789441|ref|ZP_05527872.1| two component transcriptional regulator, LuxR family protein [Streptomyces lividans TK24] gi|289773332|ref|ZP_06532710.1| AbsA2 [Streptomyces lividans TK24] gi|289703531|gb|EFD70960.1| AbsA2 [Streptomyces lividans TK24] Length = 220 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 27/52 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L L G+G ++ +L +S TV Y+ KLD NR+QA Sbjct: 155 GLTGREREVLALLGEGLSNAAAGARLHMSEATVKTYVSRVLTKLDCDNRVQA 206 >gi|256786676|ref|ZP_05525107.1| two-component system response transcriptional regulator [Streptomyces lividans TK24] Length = 202 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTE+E L+L G+G T+ I E+L L+ T+ Y+ S KL R QA A Sbjct: 139 RLTEQERRILELIGEGLTNRAIGERLHLAEKTIKNYVSSLLGKLGMQRRSQAAA 192 >gi|295399431|ref|ZP_06809413.1| transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|312110010|ref|YP_003988326.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294978897|gb|EFG54493.1| transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|311215111|gb|ADP73715.1| transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 74 Score = 37.0 bits (84), Expect = 2.4, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIARELFISEKTVRNHISNAMQKLGVKGRSQAVIELLRMG 70 >gi|166213482|ref|ZP_02239517.1| HTH-type transcriptional regulator MalT (ATP-dependent transcriptionalactivator malT) [Yersinia pestis biovar Antiqua str. B42003004] gi|166205423|gb|EDR49903.1| HTH-type transcriptional regulator MalT (ATP-dependent transcriptionalactivator malT) [Yersinia pestis biovar Antiqua str. B42003004] Length = 759 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF-- 231 LT+RE L L GY++++IA +L ++ T+ ++ + KL +R +A+ +A R Sbjct: 695 LTQREWQVLGLIYSGYSNDQIANELDVAATTIKTHIRNLYQKLGVAHRQEAVQQAQRLLQ 754 Query: 232 --GYI 234 GY+ Sbjct: 755 MMGYV 759 >gi|149192492|ref|ZP_01870678.1| response regulator [Vibrio shilonii AK1] gi|148833673|gb|EDL50724.1| response regulator [Vibrio shilonii AK1] Length = 214 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 4/71 (5%) Query: 168 SSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 SSA+ N L+ERE + + G +I+E+L LS TVN+Y KLD ++ Sbjct: 139 SSASENPFKDLSERELQIMMMITKGQKVTDISEQLSLSPKTVNSYRYRLFSKLDINGDVE 198 Query: 224 AIAKAIRFGYI 234 AIR G + Sbjct: 199 LTHLAIRHGML 209 >gi|148560164|ref|YP_001258354.1| LuxR family DNA-binding response regulator [Brucella ovis ATCC 25840] gi|148371421|gb|ABQ61400.1| DNA-binding response regulator, LuxR family [Brucella ovis ATCC 25840] Length = 213 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT ++T L + +G +++IA +LG+S TV A++ + KL +R QA+ R Sbjct: 147 RTLTPQQTRVLTMLTEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRI 206 Query: 232 G 232 G Sbjct: 207 G 207 >gi|119775008|ref|YP_927748.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119767508|gb|ABM00079.1| response regulator receiver protein [Shewanella amazonensis SB2B] Length = 215 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ LQL +GY++ +IAE + +S+ TV + +L +I IA +RF Sbjct: 154 LTNRQKQILQLIAEGYSTRQIAESISVSIKTVETHRAHIMARL----QIFDIAGLVRFA 208 >gi|330816528|ref|YP_004360233.1| Transcriptional regulator, LuxR family protein [Burkholderia gladioli BSR3] gi|327368921|gb|AEA60277.1| Transcriptional regulator, LuxR family protein [Burkholderia gladioli BSR3] Length = 293 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 2/46 (4%) Query: 165 KKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++RS AAR+L TERET L+L G T+ +IA +L ++V TV Y Sbjct: 220 QQRSDAARSLALTERETGILRLLRSGCTAHDIAGQLCVAVPTVYGY 265 >gi|302544568|ref|ZP_07296910.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462186|gb|EFL25279.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 240 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 179 RLTQREREVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNR 227 >gi|228469458|ref|ZP_04054466.1| transcriptional regulator, LuxR family domain protein [Porphyromonas uenonis 60-3] gi|228309033|gb|EEK17676.1| transcriptional regulator, LuxR family domain protein [Porphyromonas uenonis 60-3] Length = 201 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +EL + S L++RE + G T++EIA+ L LS HTV + + KLD Sbjct: 120 VELIESDESKQNPLSQRECEVVTWVARGLTNKEIADVLHLSPHTVVTHRRNIAAKLD 176 >gi|254504710|ref|ZP_05116861.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] gi|222440781|gb|EEE47460.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] Length = 248 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 29/56 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G ++++I E L LS TVN +L VKL NR A +A Sbjct: 186 QLTQREAEVLIWIAKGKSNKDIGEILNLSPRTVNKHLEQIFVKLGVENRASAAVRA 241 >gi|123967724|ref|YP_001008582.1| two-component response regulator [Prochlorococcus marinus str. AS9601] gi|123197834|gb|ABM69475.1| two-component response regulator [Prochlorococcus marinus str. AS9601] Length = 242 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 29/55 (52%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 T RE S LQL +G ++EIA KL S+ V Y+ +K +R + + A+ Sbjct: 182 TPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYAL 236 >gi|90411221|ref|ZP_01219233.1| transcriptional regulator MalT [Photobacterium profundum 3TCK] gi|90327750|gb|EAS44081.1| transcriptional regulator MalT [Photobacterium profundum 3TCK] Length = 902 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR QAI A Sbjct: 839 LTQREWQVLGLIYAGFSNEQIASELDVASTTIKTHIRNLYQKLNIANRQQAIDTA 893 >gi|86135201|ref|ZP_01053783.1| two-component system response regulator, LuxR family [Polaribacter sp. MED152] gi|85822064|gb|EAQ43211.1| two-component system response regulator, LuxR family [Polaribacter sp. MED152] Length = 213 Score = 37.0 bits (84), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L RE L+LA T +E+A+K+ LS T++ Y + KL+ NR+ + A+R Sbjct: 151 LKPREIEFLKLACTEMTYKEVADKMCLSPKTIDGYREALFAKLNVRNRVGMVIYAVR 207 >gi|282866803|ref|ZP_06275840.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282558349|gb|EFB63914.1| transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 337 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ E + L++ G E I+ ++G+SV T + T +L A +R QA +A+ G Sbjct: 261 QLSSTEQAILRMMAAGQLDEAISRQVGMSVRTTRRIISGLTRRLGANSRFQAGVRAVAHG 320 Query: 233 YIC 235 +I Sbjct: 321 WIA 323 >gi|258655312|ref|YP_003204468.1| LuxR family transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558537|gb|ACV81479.1| transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 867 Score = 37.0 bits (84), Expect = 2.5, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ +L G+T+ EIA++L +S T + ++ + KL NR + +A G Sbjct: 807 LTNRQLDVAKLVARGFTNAEIADRLFISTKTADHHVSAVLAKLGVGNRRAVVVQADELG 865 >gi|226312417|ref|YP_002772311.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095365|dbj|BAH43807.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 214 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 7/118 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--RNLTE 176 + +G H GY++ S +L ++ G C+ V + + L+ + + LT Sbjct: 95 ITVGAH--GYILKNSHGELLFQAIVEVYRGKCFYKTSVSQEIINLWLRSDAKTLPSVLTL 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++L GY+++E+A+KL +SV TV + + KL ++ Q I AI+ Y+ Sbjct: 153 REKELVRLIVLGYSNKEMADKLLISVKTVENHKTNIMQKLGLDSKHQLIQYAIKNRYL 210 >gi|224825489|ref|ZP_03698594.1| transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] gi|224602410|gb|EEG08588.1| transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] Length = 326 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + D L + A L+ RE+ +L G+G T +EIA L +S HTV ++ S KL Sbjct: 248 VNDLYLLTARYRCAMEQLSARESDVARLFGEGRTYKEIARLLDMSPHTVRHHIRSIYAKL 307 >gi|146312149|ref|YP_001177223.1| DNA-binding transcriptional activator SdiA [Enterobacter sp. 638] gi|145319025|gb|ABP61172.1| transcriptional activator SdiA [Enterobacter sp. 638] Length = 240 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++RE L+ +G TS EIA L +S +TVN + + K +A N+ Q A G Sbjct: 179 KFSKREKEILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATG 238 Query: 233 YI 234 +I Sbjct: 239 FI 240 >gi|111023173|ref|YP_706145.1| response regulator [Rhodococcus jostii RHA1] gi|110822703|gb|ABG97987.1| response regulator [Rhodococcus jostii RHA1] Length = 219 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 8/70 (11%) Query: 160 FLELFKKRSSAAR--------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 L+ F RS+A +LT RE L+L GYT EIAE+L +SV TV + + Sbjct: 137 VLDSFTGRSNAPEPQLDPELDSLTPRELEVLRLLARGYTYREIAEELVISVKTVETHASN 196 Query: 212 ATVKLDAVNR 221 K NR Sbjct: 197 VLRKTQQSNR 206 >gi|320534446|ref|ZP_08034923.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133339|gb|EFW25810.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 244 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%) Query: 146 IIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 ++ GA D +E + + S LT+RE L L G T++EI ++ LS+ Sbjct: 145 VLPGDGAGRHASEDSVEAVRAAEASQQVAGLTQREREILALIALGLTNQEICDREWLSMP 204 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ K +R+Q + A+R G + Sbjct: 205 TVKTHVSHLLSKTGCRDRVQLVLLALRGGVV 235 >gi|317492548|ref|ZP_07950975.1| luxR family bacterial regulatory protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919298|gb|EFV40630.1| luxR family bacterial regulatory protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 158 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 76 VSKLLEKISASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMLKL 135 Query: 217 DAVNRI 222 N I Sbjct: 136 GVDNDI 141 >gi|285016912|ref|YP_003374623.1| two-component system regulatory protein, luxr family [Xanthomonas albilineans GPE PC73] gi|283472130|emb|CBA14637.1| putative two-component system regulatory protein, luxr family [Xanthomonas albilineans] Length = 221 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 5/78 (6%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 EAH A TD E ++ R LT ++ LQ+ G G +++IA L +S T+ A Sbjct: 129 EAHDAPP---TDRAE--REVGQRLRELTPQQIRVLQMLGAGRLNKQIAYDLSVSEATIKA 183 Query: 208 YLGSATVKLDAVNRIQAI 225 ++ + KL NR QA+ Sbjct: 184 HVTAILRKLGVTNRTQAV 201 >gi|326315054|ref|YP_004232726.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371890|gb|ADX44159.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 308 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RET L G T+ +IA+ LG+S TVN +L KL R A A A ++ Sbjct: 246 DLTPRETEVLSWIAKGKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRTAAAALAGQW 304 >gi|239995139|ref|ZP_04715663.1| putative LuxR-family transcriptional regulator [Alteromonas macleodii ATCC 27126] Length = 198 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 37/70 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ A LT RE L DG +++EIA + G++ TV Y+G+ K +A +RI Sbjct: 125 KRVLPALSGLTNREKDVLSGILDGLSNKEIAREHGITERTVKEYVGTLLHKFEAKDRISL 184 Query: 225 IAKAIRFGYI 234 + + F ++ Sbjct: 185 LLRLGEFSHL 194 >gi|114799510|ref|YP_759982.1| putative DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114739684|gb|ABI77809.1| putative DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 213 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 31/60 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G G + E+A L LS +TV +Y+ KL +R +A A R G Sbjct: 148 DLTARERDVLALIGRGMRNGEVARALDLSENTVASYIKGIYRKLGISSRAEASWHATRMG 207 >gi|159898124|ref|YP_001544371.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891163|gb|ABX04243.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 207 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 38/65 (58%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A L++RE LQL G +++ IA L +S +T+ +++ KLD +R +A+A A+ Sbjct: 142 AEDELSQRELDVLQLLVRGESNKAIALSLNISENTIKSHVSHIFSKLDVRSRAEAVAVAL 201 Query: 230 RFGYI 234 + G + Sbjct: 202 QRGLV 206 >gi|110835567|ref|YP_694426.1| alkB1GHJ regulator [Alcanivorax borkumensis SK2] gi|122959213|sp|Q0VKZ4|ALKS_ALCBS RecName: Full=HTH-type transcriptional regulator AlkS gi|110648678|emb|CAL18154.1| alkB1GHJ regulator [Alcanivorax borkumensis SK2] Length = 872 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 7/78 (8%) Query: 158 TDFLELFKKRSSAARNLTE-------RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 T LE+ K+ + A LT ++ S L+ G T++EIAE+L ++ TV +L Sbjct: 789 TKDLEVRKEEADARPKLTNTQSTITIKQISLLKCVSSGMTNKEIAERLLITEDTVKWHLK 848 Query: 211 SATVKLDAVNRIQAIAKA 228 +L NR++A+++A Sbjct: 849 KIFSELKVTNRVRAVSEA 866 >gi|154245499|ref|YP_001416457.1| response regulator receiver protein [Xanthobacter autotrophicus Py2] gi|154159584|gb|ABS66800.1| response regulator receiver protein [Xanthobacter autotrophicus Py2] Length = 199 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 26/44 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 NLTERE + L G+ S+EIA L +S T++A+ + KL Sbjct: 137 NLTEREREVMDLVCRGWASKEIAAALAVSPRTIDAHRANIAEKL 180 >gi|22127771|ref|NP_671194.1| transcriptional regulator MalT [Yersinia pestis KIM 10] gi|45439988|ref|NP_991527.1| transcriptional regulator MalT [Yersinia pestis biovar Microtus str. 91001] gi|51598066|ref|YP_072257.1| transcriptional regulator MalT [Yersinia pseudotuberculosis IP 32953] gi|108809337|ref|YP_653253.1| transcriptional regulator MalT [Yersinia pestis Antiqua] gi|145597374|ref|YP_001161449.1| transcriptional regulator MalT [Yersinia pestis Pestoides F] gi|150260807|ref|ZP_01917535.1| maltose regulon positive regulatory protein [Yersinia pestis CA88-4125] gi|153948575|ref|YP_001402942.1| MalT family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|165928054|ref|ZP_02223886.1| transcriptional regulator MalT [Yersinia pestis biovar Orientalis str. F1991016] gi|165936258|ref|ZP_02224827.1| transcriptional regulator MalT [Yersinia pestis biovar Orientalis str. IP275] gi|167398724|ref|ZP_02304248.1| transcriptional regulator MalT [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418998|ref|ZP_02310751.1| transcriptional regulator MalT [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426529|ref|ZP_02318282.1| transcriptional regulator MalT [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170022421|ref|YP_001718926.1| transcriptional regulator MalT [Yersinia pseudotuberculosis YPIII] gi|186897266|ref|YP_001874378.1| transcriptional regulator MalT [Yersinia pseudotuberculosis PB1/+] gi|218927336|ref|YP_002345211.1| transcriptional regulator MalT [Yersinia pestis CO92] gi|229836398|ref|ZP_04456565.1| maltose regulon positive regulatory protein [Yersinia pestis Pestoides A] gi|229839977|ref|ZP_04460136.1| maltose regulon positive regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842059|ref|ZP_04462214.1| maltose regulon positive regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|270488145|ref|ZP_06205219.1| maltose regulon activator MalT [Yersinia pestis KIM D27] gi|294502216|ref|YP_003566278.1| transcriptional regulator MalT [Yersinia pestis Z176003] gi|46577098|sp|Q8ZJI2|MALT_YERPE RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|81691621|sp|Q664J3|MALT_YERPS RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|122979375|sp|Q1C2L4|MALT_YERPA RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|189081557|sp|A7FNW4|MALT_YERP3 RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|189081558|sp|A4TGR4|MALT_YERPP RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|226694957|sp|B2K5W2|MALT_YERPB RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|226694958|sp|B1JHZ0|MALT_YERPY RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|21960898|gb|AAM87445.1|AE013994_10 positive regulator of mal regulon [Yersinia pestis KIM 10] gi|45434843|gb|AAS60404.1| maltose regulon positive regulatory protein [Yersinia pestis biovar Microtus str. 91001] gi|51591348|emb|CAH23014.1| maltose regulon positive regulatory protein [Yersinia pseudotuberculosis IP 32953] gi|108781250|gb|ABG15308.1| maltose regulon positive regulatory protein [Yersinia pestis Antiqua] gi|115345947|emb|CAL18810.1| maltose regulon positive regulatory protein [Yersinia pestis CO92] gi|145209070|gb|ABP38477.1| maltose regulon positive regulatory protein [Yersinia pestis Pestoides F] gi|149290215|gb|EDM40292.1| maltose regulon positive regulatory protein [Yersinia pestis CA88-4125] gi|152960070|gb|ABS47531.1| transcriptional regulator MalT [Yersinia pseudotuberculosis IP 31758] gi|165915872|gb|EDR34480.1| transcriptional regulator MalT [Yersinia pestis biovar Orientalis str. IP275] gi|165920003|gb|EDR37304.1| transcriptional regulator MalT [Yersinia pestis biovar Orientalis str. F1991016] gi|166962992|gb|EDR59013.1| transcriptional regulator MalT [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051228|gb|EDR62636.1| transcriptional regulator MalT [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054517|gb|EDR64325.1| transcriptional regulator MalT [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169748955|gb|ACA66473.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186700292|gb|ACC90921.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229690369|gb|EEO82423.1| maltose regulon positive regulatory protein [Yersinia pestis biovar Orientalis str. India 195] gi|229696343|gb|EEO86390.1| maltose regulon positive regulatory protein [Yersinia pestis biovar Orientalis str. PEXU2] gi|229706466|gb|EEO92473.1| maltose regulon positive regulatory protein [Yersinia pestis Pestoides A] gi|262360295|gb|ACY57016.1| transcriptional regulator MalT [Yersinia pestis D106004] gi|270336649|gb|EFA47426.1| maltose regulon activator MalT [Yersinia pestis KIM D27] gi|294352675|gb|ADE63016.1| transcriptional regulator MalT [Yersinia pestis Z176003] gi|320013259|gb|ADV96830.1| maltose regulon positive regulatory protein [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 903 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF-- 231 LT+RE L L GY++++IA +L ++ T+ ++ + KL +R +A+ +A R Sbjct: 839 LTQREWQVLGLIYSGYSNDQIANELDVAATTIKTHIRNLYQKLGVAHRQEAVQQAQRLLQ 898 Query: 232 --GYI 234 GY+ Sbjct: 899 MMGYV 903 >gi|309811175|ref|ZP_07704970.1| response regulator receiver domain protein [Dermacoccus sp. Ellin185] gi|308434861|gb|EFP58698.1| response regulator receiver domain protein [Dermacoccus sp. Ellin185] Length = 351 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTE+E L L GYT+ +IA +L L+ TV Y+ S KL +R QA Sbjct: 290 LTEQEKRVLDLITQGYTNRQIAGRLHLAEKTVKNYVTSLLAKLGLESRTQA 340 >gi|298113069|gb|ADI58658.1| AsuR6 [Streptomyces nodosus subsp. asukaensis] Length = 280 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 26/62 (41%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L G T+ AE+LGL TV YL SA KL A R+QA+ A R G Sbjct: 218 QLAPRELDVLACVAAGATNAVAAERLGLRPETVKGYLRSAMRKLGAHTRLQAVVAARRAG 277 Query: 233 YI 234 + Sbjct: 278 LL 279 >gi|256394854|ref|YP_003116418.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361080|gb|ACU74577.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 232 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 32/63 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G ++ EIAE L LS TV ++ KL+ +R+QA+ A G Sbjct: 161 RLTDREREVLVEIARGQSNAEIAETLHLSEATVKTHVSRILPKLELRDRVQAVVFAYEIG 220 Query: 233 YIC 235 + Sbjct: 221 LVA 223 >gi|239942985|ref|ZP_04694922.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989445|ref|ZP_04710109.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291446458|ref|ZP_06585848.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291349405|gb|EFE76309.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 219 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 9/95 (9%) Query: 149 AHG-------ACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLG 199 AHG Q+I +F+ RSS R+LT RE +L GY + EIA KL Sbjct: 125 AHGEALLSPSVTRQLIQEFVRRPAVRSSTTDLRSLTGREIDVFRLLVQGYGNAEIARKLV 184 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L T+ +++ KL +R Q + A G + Sbjct: 185 LGESTIKSHVQHLYRKLGVRDRAQVVIFAYENGLV 219 >gi|124004721|ref|ZP_01689565.1| transcriptional regulatory protein DegU [Microscilla marina ATCC 23134] gi|123989844|gb|EAY29373.1| transcriptional regulatory protein DegU [Microscilla marina ATCC 23134] Length = 223 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++T RE L L YT++EIA++L +S+ TV + + K N + + KA++ G Sbjct: 158 HMTPREREVLALILKEYTTQEIADQLFVSIRTVETHRKNLLTKFGVKNVVGLVVKALQMG 217 >gi|160898545|ref|YP_001564127.1| LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364129|gb|ABX35742.1| transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 163 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 32/64 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L+ G ++IA LG+S HTV + + +L N ++ + A R Sbjct: 27 ASALTAREIDVLEAMAKGLGCKDIAHTLGISEHTVRKHRSNMCTRLGLRNAVELVTHARR 86 Query: 231 FGYI 234 G++ Sbjct: 87 QGWL 90 >gi|331695485|ref|YP_004331724.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326950174|gb|AEA23871.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 244 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 19/125 (15%) Query: 122 VRLGFHKNGYV---IFTSEFL-----MLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 VR G H GY+ + TSE + +L E + ++ V+ D L + AR Sbjct: 127 VRSGVH--GYLRKGVETSEIVRSVRALLRGESVFDSR--TTSVVVDVL---RDEDGGARP 179 Query: 174 ----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LTERE L+L G ++ EIA +L +S TV ++ + KLD R + + A Sbjct: 180 RGQMLTERENQVLKLLAVGMSNREIAVRLLISEATVKFHVRNLREKLDVRRRTEIVYTAT 239 Query: 230 RFGYI 234 R G + Sbjct: 240 RQGMV 244 >gi|320537074|ref|ZP_08037052.1| transcriptional regulator, LuxR family [Treponema phagedenis F0421] gi|320146077|gb|EFW37715.1| transcriptional regulator, LuxR family [Treponema phagedenis F0421] Length = 386 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 28/55 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 NL++RE L+L G T +EIA KL L T+ Y KL R++A + Sbjct: 318 NLSKREYIILELICQGSTGKEIAYKLNLKEQTIKNYTSRLYKKLGVTGRVEACQR 372 >gi|297156887|gb|ADI06599.1| response regulator receiver protein [Streptomyces bingchenggensis BCW-1] Length = 222 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G +IA++L ++ TV ++GS KL +R QAI +A G Sbjct: 159 TLTAREREVLELLAGGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVRDRAQAIVRAREAG 218 >gi|258651449|ref|YP_003200605.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554674|gb|ACV77616.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 198 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+ G ++ EI +L LS TV + KL A +R QA+A R G+ Sbjct: 137 LTEREMQVLRGMSQGQSNGEIGRELFLSEDTVKTHARRLFRKLGARDRAQAVALGFRRGF 196 Query: 234 I 234 + Sbjct: 197 V 197 >gi|256421426|ref|YP_003122079.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256036334|gb|ACU59878.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 207 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +EL K A +T RE LQL G G T+ +IA++L +S HTV ++ + K VN Sbjct: 138 MELLK----AIPRITRREKEILQLIGKGLTTMQIADQLFISTHTVESHRKNLMEKF-GVN 192 Query: 221 RIQAIAK 227 ++ K Sbjct: 193 NTTSVVK 199 >gi|297560982|ref|YP_003679956.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845430|gb|ADH67450.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 220 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + R++ AR L+ RE G T+ EIA +L +SV TV A++ + KLD NR Q Sbjct: 152 RARTALAR-LSPREHEVALAVARGRTNAEIAAQLYMSVATVKAHVSNVLAKLDMDNRTQ 209 >gi|226364927|ref|YP_002782709.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226243416|dbj|BAH53764.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 949 Score = 36.6 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE + G ++ +IAE+L +SV TV ++ A +KLD +R Sbjct: 813 LTSREREVGSMVAAGLSNRQIAERLFVSVRTVEGHIYRACMKLDVADR 860 >gi|167469447|ref|ZP_02334151.1| transcriptional regulator MalT [Yersinia pestis FV-1] Length = 770 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF-- 231 LT+RE L L GY++++IA +L ++ T+ ++ + KL +R +A+ +A R Sbjct: 706 LTQREWQVLGLIYSGYSNDQIANELDVAATTIKTHIRNLYQKLGVAHRQEAVQQAQRLLQ 765 Query: 232 --GYI 234 GY+ Sbjct: 766 MMGYV 770 >gi|94969929|ref|YP_591977.1| LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94551979|gb|ABF41903.1| transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 153 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T RE L L G ++ EIA +L +S +TV + A KL A R QA+ + G Sbjct: 91 GITAREMEILTLVAHGLSNREIATQLFVSENTVKTHCARAFDKLGAARRTQAVQRGKELG 150 Query: 233 YI 234 + Sbjct: 151 LL 152 >gi|302555617|ref|ZP_07307959.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302473235|gb|EFL36328.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] Length = 177 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 18/109 (16%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN--------- 173 + G+ +F +E A+ + AH A T + L +R AR Sbjct: 59 LERRGFTLFAAE----AHAQAVRAHRDPRAARHSRTRAVAL-ARRCQGARTPALSGLVLG 113 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT R+ + LA G ++ +IAE+L LS+ TV +L SA +L A +R Sbjct: 114 ELTARQRQIVTLAAAGLSNRQIAERLTLSIRTVGNHLYSAYARLGANDR 162 >gi|295396928|ref|ZP_06807052.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] gi|294974862|gb|EFG50565.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] Length = 210 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E+ R +LT RE LQL G +++EIA++L +++ TV ++ + KL +R Sbjct: 137 EVEANRHHLHDDLTTREREVLQLIAAGKSNQEIADELFITLKTVKTHVSNILSKLGVEDR 196 Query: 222 IQA 224 QA Sbjct: 197 TQA 199 >gi|269126233|ref|YP_003299603.1| LuxR family transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311191|gb|ACY97565.1| transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 956 Score = 36.6 bits (83), Expect = 2.5, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 32/53 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ RE +L +G T+++IAE+L LS+ TV +L + KL +R+ ++ Sbjct: 893 LSPRELEVARLVMEGCTNQQIAERLFLSIRTVETHLSNIFAKLGVGSRVAMVS 945 >gi|239932032|ref|ZP_04688985.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440400|ref|ZP_06579790.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343295|gb|EFE70251.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE+ L+ G T+ EIA ++ + TV ++ S K A +R QA+ A G Sbjct: 156 RLTGRESEVLRHVAAGLTNAEIARRMEVGPATVKTHVASVLAKTGARDRTQAVIAAYEAG 215 Query: 233 YI 234 ++ Sbjct: 216 FL 217 >gi|134098410|ref|YP_001104071.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133911033|emb|CAM01146.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 241 Score = 36.6 bits (83), Expect = 2.5, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 24/38 (63%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 R L+ RE LQL DG +++EI E L LS TV ++L Sbjct: 175 RELSGREVEVLQLVADGRSNKEIGEALNLSALTVKSHL 212 >gi|330468305|ref|YP_004406048.1| NarL family two-component response regulator [Verrucosispora maris AB-18-032] gi|328811276|gb|AEB45448.1| NarL family two-component response regulator [Verrucosispora maris AB-18-032] Length = 219 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 29/56 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L G + IA +L LS TV +L + VK+ +R QAI +A Sbjct: 156 QLTDREREILDHVAQGLDNATIAHRLALSPKTVRNHLSNILVKIGVGDRAQAIVRA 211 >gi|323359244|ref|YP_004225640.1| DNA-binding HTH domain-containing proteins [Microbacterium testaceum StLB037] gi|323275615|dbj|BAJ75760.1| DNA-binding HTH domain-containing proteins [Microbacterium testaceum StLB037] Length = 283 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 22/46 (47%), Positives = 26/46 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +L+ RE L A G T+ EIA L L TV +YL SA KLDA Sbjct: 221 HLSRREIDVLACAAVGSTNGEIAASLHLRETTVKSYLASAMAKLDA 266 >gi|308231539|ref|ZP_07663880.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu001] gi|308216986|gb|EFO76385.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu001] Length = 771 Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ ++ +LT E ++L G+G +++IA +L +S TV +L KL +R+Q Sbjct: 704 KRPATGWESLTPTEIDVVRLVGEGLANKDIATRLFVSPRTVQTHLTHVYTKLGFTSRLQL 763 Query: 225 IAKAIR 230 A R Sbjct: 764 AQAAAR 769 >gi|307329449|ref|ZP_07608610.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306884858|gb|EFN15883.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 191 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 30/58 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTE+E L L G+G T+ I E+L L+ T+ Y+ S KL R QA A R Sbjct: 126 LTEQERRILLLIGEGLTNRAIGERLHLAEKTIKNYVSSLLAKLGMERRSQAAAYVARM 183 >gi|260433757|ref|ZP_05787728.1| transcriptional regulatory protein DegU [Silicibacter lacuscaerulensis ITI-1157] gi|260417585|gb|EEX10844.1| transcriptional regulatory protein DegU [Silicibacter lacuscaerulensis ITI-1157] Length = 213 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LT RE L+ G +++EIA +L + TV Y+ S KL A NR++A Sbjct: 152 DLTHREEEILRRVAKGLSNKEIAAELSIQEKTVKHYMTSILSKLHARNRVEA 203 >gi|257885374|ref|ZP_05665027.1| regulatory protein [Enterococcus faecium 1,231,501] gi|257821230|gb|EEV48360.1| regulatory protein [Enterococcus faecium 1,231,501] Length = 209 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%) Query: 155 QVITDFLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++I F ++ K +S+ A + +ERE + ++ G ++EIA+ L LS TV Y+ Sbjct: 127 EIIETFTQMMKNKSTIDSHAYASFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYIS 186 Query: 211 SATVKLDAVNRIQ 223 KLD +R Q Sbjct: 187 QLLEKLDLRDRTQ 199 >gi|239980308|ref|ZP_04702832.1| two-component system response regulator [Streptomyces albus J1074] gi|291452173|ref|ZP_06591563.1| two-component system response regulator [Streptomyces albus J1074] gi|291355122|gb|EFE82024.1| two-component system response regulator [Streptomyces albus J1074] Length = 229 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 5/93 (5%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLS 201 + A +++ F + S+A R+ LT RE + L G ++ EIA L LS Sbjct: 126 VVAPSTTRRLLDRFAPMLPDASAAPRHAGLDRLTGREREVMVLVAQGLSNGEIAAHLVLS 185 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++G KL +R+Q + A G + Sbjct: 186 EATVKTHVGRILTKLGLRDRVQVVVLAYETGLV 218 >gi|223934665|ref|ZP_03626585.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896620|gb|EEF63061.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 209 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L G ++EIA+ L ++ HT +L S KL +R +A+ A++ G Sbjct: 146 QLSPREVQVLSELARGLANKEIADVLNITEHTTKDHLKSILAKLRVADRTEAVTVALQRG 205 Query: 233 YI 234 I Sbjct: 206 II 207 >gi|74317606|ref|YP_315346.1| two component LuxR family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74057101|gb|AAZ97541.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus denitrificans ATCC 25259] Length = 215 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L + G T IA+KL LSV TV+ Y G K+ N + AI+ G Sbjct: 153 SLSNREYQTLCMIASGLTVSGIADKLALSVKTVSMYRGRVLAKMQLKNNAELTHYAIKHG 212 Query: 233 YI 234 + Sbjct: 213 LL 214 >gi|293395211|ref|ZP_06639497.1| LuxR family response regulator [Serratia odorifera DSM 4582] gi|291422388|gb|EFE95631.1| LuxR family response regulator [Serratia odorifera DSM 4582] Length = 216 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSKLLEKISASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|302555105|ref|ZP_07307447.1| response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472723|gb|EFL35816.1| response regulator [Streptomyces viridochromogenes DSM 40736] Length = 271 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L G T+ AE+LG++ TV AYL SA KL A R +A+ A R G Sbjct: 209 RLAPREVDVLACVAAGATNAVAAERLGVTPETVKAYLRSAMRKLRARTRGEAVVAARRAG 268 Query: 233 YI 234 ++ Sbjct: 269 WL 270 >gi|261418694|ref|YP_003252376.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319765509|ref|YP_004131010.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261375151|gb|ACX77894.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317110375|gb|ADU92867.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 550 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L+L G ++ EI+E+L +SVHTV ++ + K+ +R Q IA Sbjct: 483 SEQLTAREMDVLELLIQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIA 538 >gi|149183304|ref|ZP_01861745.1| transcriptional regulator [Bacillus sp. SG-1] gi|148848997|gb|EDL63206.1| transcriptional regulator [Bacillus sp. SG-1] Length = 74 Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREKEVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|108814105|ref|YP_649872.1| maltose regulon positive regulatory protein [Yersinia pestis Nepal516] gi|108777753|gb|ABG20272.1| maltose regulon positive regulatory protein [Yersinia pestis Nepal516] Length = 654 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF-- 231 LT+RE L L GY++++IA +L ++ T+ ++ + KL +R +A+ +A R Sbjct: 590 LTQREWQVLGLIYSGYSNDQIANELDVAATTIKTHIRNLYQKLGVAHRQEAVQQAQRLLQ 649 Query: 232 --GYI 234 GY+ Sbjct: 650 MMGYV 654 >gi|150391892|ref|YP_001321941.1| two component LuxR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149951754|gb|ABR50282.1| two component transcriptional regulator, LuxR family [Alkaliphilus metalliredigens QYMF] Length = 208 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 36/68 (52%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 V+T L+ K++ LTERE ++ G+G ++ EI+ L LS TV Y+ K Sbjct: 131 VLTSMLKEEKEKHHLDLQLTEREHEIIKWVGEGLSNREISAALYLSEGTVRNYVTQLLEK 190 Query: 216 LDAVNRIQ 223 L+ +R Q Sbjct: 191 LNVRDRTQ 198 >gi|157283845|ref|YP_001468113.1| two component LuxR family transcriptional regulator [Kineococcus radiotolerans SRS30216] gi|151362987|gb|ABS05989.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 241 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 29/54 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A L+ RE LQL +G +++IA LG+S HTV ++G +L R A Sbjct: 174 ATGLSGREHEVLQLIAEGLANKQIARSLGISEHTVKVHVGRILRQLGVSGRTAA 227 >gi|302339198|ref|YP_003804404.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301636383|gb|ADK81810.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 223 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT++E +QL G GY+++EI ++ S T+ Y+ K+ +R Q AI+ G Sbjct: 155 NLTDQEIRIIQLIGRGYSNKEIMGEVNFSEGTIRNYISMILKKIQLRDRTQIAIFAIQSG 214 >gi|229904644|ref|ZP_04519755.1| Transcriptional activator of maltose regulon,MalT [Yersinia pestis Nepal516] gi|229678762|gb|EEO74867.1| Transcriptional activator of maltose regulon,MalT [Yersinia pestis Nepal516] Length = 656 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF-- 231 LT+RE L L GY++++IA +L ++ T+ ++ + KL +R +A+ +A R Sbjct: 592 LTQREWQVLGLIYSGYSNDQIANELDVAATTIKTHIRNLYQKLGVAHRQEAVQQAQRLLQ 651 Query: 232 --GYI 234 GY+ Sbjct: 652 MMGYV 656 >gi|254482175|ref|ZP_05095416.1| transcriptional regulator, LuxR family protein [marine gamma proteobacterium HTCC2148] gi|214037500|gb|EEB78166.1| transcriptional regulator, LuxR family protein [marine gamma proteobacterium HTCC2148] Length = 282 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERET + L G++++ +AEKL +S+ TV + A KL+ ++ + Sbjct: 198 LTERETQVINLVLHGHSTKTVAEKLSISMETVKLHRKHAYAKLEVSSQAE 247 >gi|319440533|ref|ZP_07989689.1| putative transcription regulator [Corynebacterium variabile DSM 44702] Length = 146 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LT RE ++L GYT E+A++L +SV TV ++ K NR Q Sbjct: 85 DLTPREVEVMRLLARGYTYREMAKRLFISVKTVETHVSHVLRKTQQTNRHQ 135 >gi|320106542|ref|YP_004182132.1| LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925063|gb|ADV82138.1| transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 236 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 5/99 (5%) Query: 129 NGYVIFTSEF--LMLANEVIIEAH-GACYQVITDFLELFKKRSSAARNL--TERETSCLQ 183 GY+ +TS L +A EV+ + A +V++ ++L L T RE L+ Sbjct: 117 KGYLTYTSGPGDLRMAIEVVRDGSVWAPRKVLSRLMDLRSPEEKERPELRFTPREKQVLE 176 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L G+T+ +IA KL + T ++G K+ NR+ Sbjct: 177 LLAAGHTNRDIAGKLSIDETTAKTHVGRLLRKIGVPNRV 215 >gi|297528772|ref|YP_003670047.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297252024|gb|ADI25470.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 550 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L+L G ++ EI+E+L +SVHTV ++ + K+ +R Q IA Sbjct: 483 SEQLTAREMDVLELLIQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIA 538 >gi|296270643|ref|YP_003653275.1| LuxR family transcriptional regulator [Thermobispora bispora DSM 43833] gi|296093430|gb|ADG89382.1| transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 74 Score = 36.6 bits (83), Expect = 2.6, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L++RET ++L G+++ EIA +L LS TV ++ KL +R AI + Sbjct: 11 LSKRETEVMELIASGHSNGEIARRLFLSEKTVKNHVNRIYAKLGVRSRTSAIGR 64 >gi|254489762|ref|ZP_05102957.1| Sigma-70, region 4 family [Methylophaga thiooxidans DMS010] gi|224464847|gb|EEF81101.1| Sigma-70, region 4 family [Methylophaga thiooxydans DMS010] Length = 212 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 139 LMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 LM A+ + + QV+ L E K + A LT+RE L +G ++ IA K Sbjct: 118 LMKASVGVTVLQDSLTQVLKKALSEPDTKVNQADAGLTDRENEILDCLAEGMNNKNIARK 177 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQA 224 LG+S TV ++ + KL+ +R++A Sbjct: 178 LGISDTTVKVHIKNILRKLNLTSRLEA 204 >gi|254472864|ref|ZP_05086263.1| hypothetical protein PJE062_3930 [Pseudovibrio sp. JE062] gi|211958328|gb|EEA93529.1| hypothetical protein PJE062_3930 [Pseudovibrio sp. JE062] Length = 381 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 35/60 (58%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 TDF ++ K S NLT +ET ++ +G ++ + A+ LG+S +T ++ + + +LD Sbjct: 300 TDFADVPDKMISHLLNLTPKETEVVKALTNGASTRDAADLLGISYNTARNHIANVSRRLD 359 >gi|156975940|ref|YP_001446847.1| hypothetical protein VIBHAR_03706 [Vibrio harveyi ATCC BAA-1116] gi|156527534|gb|ABU72620.1| hypothetical protein VIBHAR_03706 [Vibrio harveyi ATCC BAA-1116] Length = 214 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A +LT RE L+ G ++ ++AE+L +S T+ ++L KL NR+QAIA Sbjct: 148 APATVDLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAW 207 Query: 228 A 228 A Sbjct: 208 A 208 >gi|54303009|ref|YP_133002.1| transcriptional regulator MalT [Photobacterium profundum SS9] gi|46916437|emb|CAG23202.1| putative malT regulatory protein [Photobacterium profundum SS9] Length = 902 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR QAI A Sbjct: 839 LTQREWQVLGLIYAGFSNEQIASELDVASTTIKTHIRNLYQKLNIANRQQAINTA 893 >gi|88706258|ref|ZP_01103964.1| transcriptional regulator, LuxR family protein [Congregibacter litoralis KT71] gi|88699409|gb|EAQ96522.1| transcriptional regulator, LuxR family protein [Congregibacter litoralis KT71] Length = 283 Score = 36.6 bits (83), Expect = 2.6, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 31/50 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERET + L G++++ +A +LG+SV TV + A KL+ ++ + Sbjct: 200 LTERETQVINLVLHGHSTKSVATRLGISVETVKLHRKHAYAKLEVSSQAE 249 >gi|302557180|ref|ZP_07309522.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302474798|gb|EFL37891.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 382 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ EIA L +S HTV ++ + KL +R+QA+ A G Sbjct: 316 TLTAREVETLRLLARGLSNAEIATTLFVSEHTVKTHVSNVLGKLALRDRVQAVICAYETG 375 Query: 233 YI 234 I Sbjct: 376 LI 377 >gi|256395191|ref|YP_003116755.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361417|gb|ACU74914.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 217 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 35/60 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G + ++IA++L LS TV ++ + KL NR++ + AI G Sbjct: 152 RLTDRETEVLRLVAKGLSYKQIADRLVLSHRTVQNHVQNTLNKLQLHNRVELVRYAIAQG 211 >gi|239980726|ref|ZP_04703250.1| putative two-component system response regulator [Streptomyces albus J1074] Length = 204 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTE+E L L G+G T+ I E+L L+ T+ Y+ + KL R QA A R Sbjct: 140 GLTEQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSALLAKLGMERRSQAAAYVARM 198 >gi|238757839|ref|ZP_04619021.1| hypothetical protein yaldo0001_20240 [Yersinia aldovae ATCC 35236] gi|238703824|gb|EEP96359.1| hypothetical protein yaldo0001_20240 [Yersinia aldovae ATCC 35236] Length = 211 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + +A LT RE L+L DGYT+ I E+L +SV TV + + KL+ Sbjct: 144 NESAEILTPRERQILRLIADGYTNRLIGERLCISVKTVETHRLNIMRKLNV 194 >gi|237811617|ref|YP_002896068.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] gi|237503468|gb|ACQ95786.1| DNA-binding response regulator [Burkholderia pseudomallei MSHR346] Length = 363 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L +++ S L+ R+ ++ G T++ IA LG+S TV +L S +L A NR Sbjct: 231 QLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNR 290 Query: 222 IQAIA 226 A+A Sbjct: 291 AAAVA 295 >gi|229491998|ref|ZP_04385815.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|229321130|gb|EEN86934.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 225 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L L G G ++ E++ +LG+ TV +++ KL +R+QA Sbjct: 165 ELTDREREVLALLGTGMSNAELSRELGVGAPTVKSHVSRVLSKLHLTSRVQA 216 >gi|297203696|ref|ZP_06921093.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197711744|gb|EDY55778.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L++ G ++ EIA L +S HTV ++ + KL +R+QA+ A G Sbjct: 157 LTAREVEILRMLARGLSNAEIATTLFVSEHTVKTHVSNVLSKLGLRDRVQAVICAYETGL 216 Query: 234 I 234 + Sbjct: 217 V 217 >gi|172062446|ref|YP_001810097.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994963|gb|ACB65881.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 514 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA +LGL+ +TV ++ + KLD +R +AI A G Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 233 YI 234 + Sbjct: 490 IV 491 >gi|326799417|ref|YP_004317236.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326550181|gb|ADZ78566.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 208 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L LA EIA+++ LS+ T++ Y S K +R + +AI+ Sbjct: 144 DLTDREKEFLYLACSDLNYHEIAKRMFLSIKTIDGYRASLFAKFKVKSRTGLVLQAIKHK 203 Query: 233 YI 234 ++ Sbjct: 204 FV 205 >gi|324997346|ref|ZP_08118458.1| two component transcriptional regulator, LuxR family protein [Pseudonocardia sp. P1] Length = 222 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ RE L+L GY + EIA+ L L+ TV ++ + +KL +R +A+ +A+ Sbjct: 152 QELSGRELEVLRLLAAGYANREIAQVLVLAEGTVKNHVSNVLLKLGTRDRTRAVLRALHH 211 Query: 232 GYI 234 G + Sbjct: 212 GLL 214 >gi|271966300|ref|YP_003340496.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509475|gb|ACZ87753.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 172 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 E H Q +T + ++ A LT+RE L L DG ++ + A KL +S ++ Sbjct: 87 EIHDTLAQGLTGIIPQLRRPVRA--TLTDREMQVLTLVADGASNRQAAAKLFISEASIKT 144 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +L KLD R A+ +A R G + Sbjct: 145 HLLHIYDKLDVRYRAAAVGEAYRRGLLS 172 >gi|256389326|ref|YP_003110890.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355552|gb|ACU69049.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 233 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 30/58 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT E L+L +G T+ +I E+L L+ TV Y+ KL R QA A A+R Sbjct: 169 TLTVSEKRILELIAEGLTNRQIGERLNLAEKTVKNYITGILAKLAMQRRTQAAAFAVR 226 >gi|171912646|ref|ZP_02928116.1| methyl-accepting chemotaxis sensory transducer [Verrucomicrobium spinosum DSM 4136] Length = 331 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 27/52 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L+ +G ++ EI LG+S HTV ++ KL NR+ A Sbjct: 267 TLTAREKEVLEWMQEGKSNPEIGVILGISTHTVKRHVERVLAKLGVENRVAA 318 >gi|167645498|ref|YP_001683161.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167347928|gb|ABZ70663.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 137 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A+ LT +E L+ G +++EIA LGLS +TV ++ KL R QAI KA Sbjct: 72 ASLGLTGQEVKVLERLAAGQSNKEIAAALGLSPNTVKTHIAHLFEKLAVSRRTQAIGKA 130 >gi|54024206|ref|YP_118448.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54015714|dbj|BAD57084.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 222 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G ++ EI +L +S TV ++ + KL A R A+ +A + G Sbjct: 161 TLTDRETKVLELLARGMSNREIGGRLYISETTVKFHVRNIMRKLSASTRAGAVYEASKLG 220 Query: 233 YI 234 I Sbjct: 221 LI 222 >gi|289549975|ref|YP_003470879.1| Two-component response regulator [Staphylococcus lugdunensis HKU09-01] gi|315659398|ref|ZP_07912261.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|289179507|gb|ADC86752.1| Two-component response regulator [Staphylococcus lugdunensis HKU09-01] gi|315495517|gb|EFU83849.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 217 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L L GY ++EIAEKL +SV TV A+ KL ++ + + A++ Sbjct: 155 LSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMSKLGLKSKPELVEYALK 211 >gi|261346125|ref|ZP_05973769.1| DNA-binding response regulator, LuxR family [Providencia rustigianii DSM 4541] gi|268591167|ref|ZP_06125388.1| DNA-binding response regulator, LuxR family [Providencia rettgeri DSM 1131] gi|282565778|gb|EFB71313.1| DNA-binding response regulator, LuxR family [Providencia rustigianii DSM 4541] gi|291313394|gb|EFE53847.1| DNA-binding response regulator, LuxR family [Providencia rettgeri DSM 1131] Length = 216 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSKLLEKVNASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|223940658|ref|ZP_03632499.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223890670|gb|EEF57190.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 217 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 39/81 (48%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +VI D+L + S LT R+ LQL +G +++E+A L LSV TV + Sbjct: 134 RVIEDYLGRINGQKSPMEQLTPRQREILQLIAEGKSTKEMAFLLNLSVKTVETHRTQLMD 193 Query: 215 KLDAVNRIQAIAKAIRFGYIC 235 +L + + A+R G I Sbjct: 194 RLGIHDVPGLVRYAMRMGLIS 214 >gi|170782304|ref|YP_001710637.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169156873|emb|CAQ02041.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 222 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T RE LQ G+++ EIAE++ LS TV +++ S KL NR+ +A + G Sbjct: 160 GITPREGDVLQGVLLGWSNAEIAEEIALSSETVKSHVASLMRKLACRNRVALAVRAYQMG 219 >gi|157412526|ref|YP_001483392.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] gi|157387101|gb|ABV49806.1| two-component response regulator [Prochlorococcus marinus str. MIT 9215] Length = 242 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + T RE S LQL +G ++EIA KL S+ V Y+ +K +R + + A+ Sbjct: 180 SFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYAL 236 >gi|254229254|ref|ZP_04922672.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262393135|ref|YP_003284989.1| DNA-binding HTH domain-containing protein [Vibrio sp. Ex25] gi|151938178|gb|EDN57018.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262336729|gb|ACY50524.1| DNA-binding HTH domain-containing protein [Vibrio sp. Ex25] Length = 214 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A +LT RE L+ G ++ ++AE+L +S T+ ++L KL NR+QAIA Sbjct: 148 APATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAW 207 Query: 228 A 228 A Sbjct: 208 A 208 >gi|120553378|ref|YP_957729.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8] gi|120323227|gb|ABM17542.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8] Length = 856 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 35/60 (58%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A +T ++ S L+ +G T+ EIAE+L ++ TV ++ +L NR+QA+ +A Sbjct: 791 NAHSTITIKQISLLKCVSNGMTNREIAERLLVTEDTVKWHMKKIFSELKVTNRVQAVTEA 850 >gi|302554629|ref|ZP_07306971.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472247|gb|EFL35340.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 235 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L L DG +++EIA +L +S TV ++ + K +R Q A+R+ Sbjct: 169 GLTARETEVLVLIADGLSNQEIARRLHVSTATVKTHINNLFTKTGLKDRAQ----AVRYA 224 Query: 233 Y 233 Y Sbjct: 225 Y 225 >gi|301059676|ref|ZP_07200584.1| putative Oxygen regulatory protein NreC [delta proteobacterium NaphS2] gi|300446242|gb|EFK10099.1| putative Oxygen regulatory protein NreC [delta proteobacterium NaphS2] Length = 219 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 2/83 (2%) Query: 155 QVITDFLELFK--KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 +V+ +LE + K S +LT+RE L+L +GY ++EIAE L +S TV + + Sbjct: 136 KVLEGYLEANRTLKEQSDWDSLTQREREVLKLVAEGYQNKEIAEYLFISPKTVEKHRANI 195 Query: 213 TVKLDAVNRIQAIAKAIRFGYIC 235 K D + A AI G + Sbjct: 196 MRKTDLHSASSLTAYAIEKGLLT 218 >gi|293400727|ref|ZP_06644872.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305753|gb|EFE46997.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 205 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 2/71 (2%) Query: 155 QVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 ++I +L R +A +L +RE + L +G ++EIAE L LS TV YL + Sbjct: 125 EIIEKLPDLLNNRDTAKEQYDLNDREQQFISLVANGLNNKEIAETLFLSEGTVRNYLSNL 184 Query: 213 TVKLDAVNRIQ 223 KL +R Q Sbjct: 185 LDKLGLRDRTQ 195 >gi|269103638|ref|ZP_06156335.1| transcriptional regulator LuxR family [Photobacterium damselae subsp. damselae CIP 102761] gi|268163536|gb|EEZ42032.1| transcriptional regulator LuxR family [Photobacterium damselae subsp. damselae CIP 102761] Length = 209 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 9/85 (10%) Query: 150 HGACYQVIT---------DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 HGA QV+ D L+ + LT ++ L++ DG +++IA +L + Sbjct: 117 HGALNQVLAGDNYFPTDIDALDETDELVEKIATLTPQQLKVLKMLADGLLNKQIAYELDV 176 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAI 225 S T+ A++ + KL NR QA+ Sbjct: 177 SEATIKAHMTAIFRKLSVTNRTQAV 201 >gi|297201415|ref|ZP_06918812.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197713823|gb|EDY57857.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G ++ EIA +L LS TV ++G KL +R+Q + A G Sbjct: 156 RLTGREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETG 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|239827940|ref|YP_002950564.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239808233|gb|ACS25298.1| transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 74 Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREIFELLVQDKTTKEIARELFISEKTVRNHISNAMQKLGVKGRSQAVIELLRMG 70 >gi|170697201|ref|ZP_02888295.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170137821|gb|EDT06055.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 518 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA +LGL+ +TV ++ + KLD +R +AI A G Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 233 YI 234 + Sbjct: 490 IV 491 >gi|33591312|ref|NP_878956.1| transcriptional regulator [Bordetella pertussis Tohama I] gi|33598581|ref|NP_886224.1| transcriptional regulator [Bordetella parapertussis 12822] gi|33603531|ref|NP_891091.1| transcriptional regulator [Bordetella bronchiseptica RB50] gi|33570954|emb|CAE40423.1| transcriptional regulator [Bordetella pertussis Tohama I] gi|33574710|emb|CAE39367.1| transcriptional regulator [Bordetella parapertussis] gi|33577655|emb|CAE34920.1| transcriptional regulator [Bordetella bronchiseptica RB50] gi|332380714|gb|AEE65561.1| transcriptional regulator [Bordetella pertussis CS] Length = 78 Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 19/43 (44%), Positives = 25/43 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LT RE CL + G TS E A LG++ TV+ +L +A KL Sbjct: 7 LTPRELDCLHWSALGKTSWETARILGIAARTVDFHLANACAKL 49 >gi|120555011|ref|YP_959362.1| response regulator receiver protein [Marinobacter aquaeolei VT8] gi|120324860|gb|ABM19175.1| response regulator receiver protein [Marinobacter aquaeolei VT8] Length = 216 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/46 (39%), Positives = 26/46 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 ++T RE GYTS+EIAE+L +SV T++ Y +L A Sbjct: 143 SMTRREKDVFLPLAQGYTSKEIAEQLDVSVKTIDLYRARVMKRLGA 188 >gi|15598241|ref|NP_251735.1| two-component response regulator [Pseudomonas aeruginosa PAO1] gi|107102595|ref|ZP_01366513.1| hypothetical protein PaerPA_01003659 [Pseudomonas aeruginosa PACS2] gi|116051046|ref|YP_790127.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218890755|ref|YP_002439619.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|254236018|ref|ZP_04929341.1| hypothetical protein PACG_01974 [Pseudomonas aeruginosa C3719] gi|254241748|ref|ZP_04935070.1| hypothetical protein PA2G_02459 [Pseudomonas aeruginosa 2192] gi|296388460|ref|ZP_06877935.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] gi|313108339|ref|ZP_07794371.1| LOW QUALITY PROTEIN: putative two-component response regulator [Pseudomonas aeruginosa 39016] gi|9949150|gb|AAG06433.1|AE004729_7 probable two-component response regulator [Pseudomonas aeruginosa PAO1] gi|115586267|gb|ABJ12282.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126167949|gb|EAZ53460.1| hypothetical protein PACG_01974 [Pseudomonas aeruginosa C3719] gi|126195126|gb|EAZ59189.1| hypothetical protein PA2G_02459 [Pseudomonas aeruginosa 2192] gi|218770978|emb|CAW26743.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] gi|310880873|gb|EFQ39467.1| LOW QUALITY PROTEIN: putative two-component response regulator [Pseudomonas aeruginosa 39016] Length = 207 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE S LQ GY++++I+E++ +S TV+ Y +KL+A + + I A R Sbjct: 147 LSDREVSVLQYLSQGYSNKQISEQMFISNKTVSTYKARLLLKLNAGSLVDLIEFAKR 203 >gi|329888250|ref|ZP_08266848.1| bacterial regulatory protein, luxR family protein [Brevundimonas diminuta ATCC 11568] gi|328846806|gb|EGF96368.1| bacterial regulatory protein, luxR family protein [Brevundimonas diminuta ATCC 11568] Length = 202 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 11/137 (8%) Query: 99 ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF---LMLANEVIIEAHGACYQ 155 E G+LS G+ FA AF LG +V+ + ++ V I A G Sbjct: 62 EVGGRLSFAQRTGVFAFA--AFLENLGDEPRAWVLARRDGGGDCLIIRAVRI-ALGEAQA 118 Query: 156 VITDFLELFKKRS-----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 VI F + R A +LT ET+ L+ DG T E A+ LG+S+ T ++ Sbjct: 119 VILAFSDTAGSRRLWADFGPALDLTSAETTLLKRLVDGATVTEAAQDLGVSLETARTHVK 178 Query: 211 SATVKLDAVNRIQAIAK 227 A KL +R + AK Sbjct: 179 RAYAKLGVSSREEMFAK 195 >gi|302562036|ref|ZP_07314378.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces griseoflavus Tu4000] gi|302479654|gb|EFL42747.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces griseoflavus Tu4000] Length = 233 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 30/58 (51%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 TERE + L G G ++EEIA +L +S T ++ VKL A R Q + A G Sbjct: 176 TEREREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARARAQLVVLAYETG 233 >gi|300788310|ref|YP_003768601.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299797824|gb|ADJ48199.1| LuxR family transcriptional regulator [Amycolatopsis mediterranei U32] Length = 854 Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 32/55 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTE + L L G ++ ++A+KL ++V T +L +L A NR +A+A+A Sbjct: 794 LTETQRRILGLIATGMSNRQVADKLFITVGTTKWHLNQIFGRLQARNRTEAVARA 848 >gi|238921517|ref|YP_002935032.1| transcriptional regulator MalT [Edwardsiella ictaluri 93-146] gi|238871086|gb|ACR70797.1| HTH-type transcriptional regulator MalT [Edwardsiella ictaluri 93-146] Length = 908 Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L GY++E+IA++L ++ T+ ++ + KL +R +A+ +A Sbjct: 843 LTQREWQVLGLIYSGYSNEQIADELAVASTTIKTHIRNLYQKLGVAHRQEAVRQA 897 >gi|256392804|ref|YP_003114368.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359030|gb|ACU72527.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 927 Score = 36.6 bits (83), Expect = 2.7, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 E + RS AR+ LT +E Q+A G T+ EI +KL LS TV+++L KL + Sbjct: 841 ETSRSRSLDARDQLTPQELQIAQMAAGGLTNREIGQKLYLSHRTVSSHLHRIFPKLGVAS 900 Query: 221 R 221 R Sbjct: 901 R 901 >gi|226306403|ref|YP_002766363.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226185520|dbj|BAH33624.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 211 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L L G G ++ E++ +LG+ TV +++ KL +R+QA Sbjct: 151 ELTDREREVLALLGTGMSNAELSRELGVGAPTVKSHVSRVLSKLHLTSRVQA 202 >gi|111220151|ref|YP_710945.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111147683|emb|CAJ59339.1| Putative two-component system response regulator [Frankia alni ACN14a] Length = 213 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 7/102 (6%) Query: 129 NGYVIFTSEF--LMLANEVIIEAHGACYQVITDF-LELFKKRSSAA----RNLTERETSC 181 +G+V+ +E L+ A V+ +T ++ F +R + LT RE Sbjct: 101 SGFVLKDTEPADLLRAIRVVAAGESLLSPTVTRLVIDTFARRPAVTAPDLSGLTVREREV 160 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + L G G +++EIA +L +S T ++ VKL A +R Q Sbjct: 161 MSLVGRGMSNDEIAARLVISPATARTHVSRVMVKLAARDRAQ 202 >gi|260906658|ref|ZP_05914980.1| two component transcriptional regulator, LuxR family protein [Brevibacterium linens BL2] Length = 201 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L A G + EIA +L +S TV L +A K A NR A+ A G+ Sbjct: 141 LTERETEVLHAAAGGGSVGEIAAQLFISSGTVRNRLSAAIGKTAARNRADAVRIARDNGW 200 Query: 234 I 234 + Sbjct: 201 L 201 >gi|76811819|ref|YP_332880.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|76581272|gb|ABA50747.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] Length = 363 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L +++ S L+ R+ ++ G T++ IA LG+S TV +L S +L A NR Sbjct: 231 QLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNR 290 Query: 222 IQAIA 226 A+A Sbjct: 291 AAAVA 295 >gi|91976846|ref|YP_569505.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] gi|91683302|gb|ABE39604.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] Length = 248 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 33/57 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT + L +G ++ +IA++ G+S++TV + + + KL+ NR QA A+R Sbjct: 181 LTRPQIELLSYLANGMSNRQIAKERGMSINTVKSQVATVIQKLNVTNRTQAALFAVR 237 >gi|115359991|ref|YP_777129.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285279|gb|ABI90795.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 514 Score = 36.6 bits (83), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA +LGL+ +TV ++ + KLD +R +AI A G Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 233 YI 234 + Sbjct: 490 IV 491 >gi|320106060|ref|YP_004181650.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924581|gb|ADV81656.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 207 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE+ L G ++ EIAE+L ++ TV ++ S K+ A +R QA A++ Sbjct: 141 AVELTPRESEVLICITQGRSNREIAEQLRIAEKTVRIHVSSVLDKMGARDRTQATIYALQ 200 Query: 231 FGYI 234 G + Sbjct: 201 RGLV 204 >gi|306823235|ref|ZP_07456611.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679] gi|309801640|ref|ZP_07695761.1| response regulator receiver domain protein [Bifidobacterium dentium JCVIHMP022] gi|304553867|gb|EFM41778.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679] gi|308221772|gb|EFO78063.1| response regulator receiver domain protein [Bifidobacterium dentium JCVIHMP022] Length = 248 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L G +++EIA++L +S+ TV ++ K++A +R+QA+ Sbjct: 188 LTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDRVQAV 239 >gi|218509885|ref|ZP_03507763.1| LuxR family transcriptional regulator [Rhizobium etli Brasil 5] Length = 49 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 20/45 (44%), Positives = 28/45 (62%) Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R Sbjct: 1 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVR 45 >gi|23100277|ref|NP_693744.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22778509|dbj|BAC14778.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 210 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE L L G +++EIA +L +++ TV ++ + KL+ +R QA+ Sbjct: 148 QLTEREKEILLLMAKGKSNQEIANELFIALKTVKVHVSNILGKLEVHDRTQAV 200 >gi|328957201|ref|YP_004374587.1| two-component response regulator [YvqE] responding to cell wall stress [Carnobacterium sp. 17-4] gi|328673525|gb|AEB29571.1| two-component response regulator [YvqE] responding to cell wall stress [Carnobacterium sp. 17-4] Length = 210 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE L L G +++EIA+ L +++ TV ++ + KL+ +R QA A + Sbjct: 147 EDLTNREQEILMLIAQGNSNQEIADALFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKH 206 Query: 232 GYI 234 I Sbjct: 207 HLI 209 >gi|297617439|ref|YP_003702598.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145276|gb|ADI02033.1| transcriptional regulator, LuxR family [Syntrophothermus lipocalidus DSM 12680] Length = 218 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L + + +++EIA L LS TV +L + KL NR +A+A A + G Sbjct: 150 LSRREEEVLAMLANKLSTQEIAASLYLSESTVKTHLRNIFRKLGVRNRTEAVAAAYQLGL 209 Query: 234 I 234 + Sbjct: 210 V 210 >gi|257455373|ref|ZP_05620608.1| PAS domain containing response regulator, LuxR family [Enhydrobacter aerosaccus SK60] gi|257447335|gb|EEV22343.1| PAS domain containing response regulator, LuxR family [Enhydrobacter aerosaccus SK60] Length = 202 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 34/65 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K + S+ LT RE Q +GYT +EI + LGLS T+ + + KL A ++ + Sbjct: 115 KPQVSSESQLTAREAQIAQYVVNGYTCKEIGKLLGLSPRTIEVHKANLMKKLGARSKGEL 174 Query: 225 IAKAI 229 +K I Sbjct: 175 ASKII 179 >gi|256424138|ref|YP_003124791.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256039046|gb|ACU62590.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 255 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S LTERE L+L G +IAE++ ++ TV Y +L+ N ++A+A Sbjct: 188 RKSEKPVLTEREVEVLRLHAQGLNINQIAERIFVAPDTVKYYRRRIFERLEVSNIVEALA 247 Query: 227 KAI 229 A+ Sbjct: 248 YAV 250 >gi|171743289|ref|ZP_02919096.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC 27678] gi|171278903|gb|EDT46564.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC 27678] Length = 248 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L G +++EIA++L +S+ TV ++ K++A +R+QA+ Sbjct: 188 LTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDRVQAV 239 >gi|171316398|ref|ZP_02905617.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171098431|gb|EDT43234.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 515 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA +LGL+ +TV ++ + KLD +R +AI A G Sbjct: 430 DLTARERDVFDLLCHGLADKEIAGRLGLAPNTVRNHVATIYAKLDVHSRGEAIVWARERG 489 Query: 233 YI 234 + Sbjct: 490 IV 491 >gi|144898194|emb|CAM75058.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum gryphiswaldense MSR-1] Length = 209 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L+L G + EIA+ L +++ TV + KLD N + AIR G Sbjct: 147 SLTAREMEVLRLIAQGLKNREIADTLSIAIKTVETHRTKIMQKLDLHNSAELATYAIRRG 206 Query: 233 YI 234 I Sbjct: 207 LI 208 >gi|329937507|ref|ZP_08287065.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329303383|gb|EGG47270.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 219 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L+ RE L L G ++ EIA +L LS TV ++ + KL +R+QA+ A Sbjct: 152 RELSGREREVLTLIGRALSNAEIAARLCLSEATVKNHVTAVLRKLGLRDRVQAVVTAYDH 211 Query: 232 GYI 234 G + Sbjct: 212 GLV 214 >gi|309813018|ref|ZP_07706746.1| response regulator receiver domain protein [Dermacoccus sp. Ellin185] gi|308433090|gb|EFP56994.1| response regulator receiver domain protein [Dermacoccus sp. Ellin185] Length = 258 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G G ++ EIA L + TV ++ + +KL +R+QA+ A G Sbjct: 193 DLTPREREVLGLLGRGLSNAEIAAALFVGEATVKTHVSNVLMKLGLRDRVQAVVAAYETG 252 Query: 233 YI 234 + Sbjct: 253 LV 254 >gi|291008910|ref|ZP_06566883.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] Length = 199 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE L L +G ++IA+KL S TV L T + + NR A++ AIR G Sbjct: 139 VTNREIDVLGLVSEGNELKDIAQKLHFSERTVKNILYQFTSRFNLHNRAHAVSYAIRSGL 198 Query: 234 I 234 I Sbjct: 199 I 199 >gi|288818216|ref|YP_003432564.1| ParB-like protein [Hydrogenobacter thermophilus TK-6] gi|288787616|dbj|BAI69363.1| ParB-like protein [Hydrogenobacter thermophilus TK-6] gi|308751815|gb|ADO45298.1| transcriptional regulator, XRE family [Hydrogenobacter thermophilus TK-6] Length = 552 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 15/47 (31%), Positives = 28/47 (59%) Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+L G T EE+AE+LG+S T++ +L + + + ++Q + K Sbjct: 155 ALELREQGLTQEEVAERLGVSQQTISVWLNENSSQYQKLQKLQNLVK 201 >gi|256423541|ref|YP_003124194.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256038449|gb|ACU61993.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 208 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T RE L+LA +G T +IAEKL +S +TV ++ + K + + AI A ++G Sbjct: 147 KMTRREKEILKLAAEGLTIAQIAEKLFISPYTVESHRKNLMDKFEVNSVAAAIKLAGQYG 206 Query: 233 YI 234 ++ Sbjct: 207 FL 208 >gi|156975022|ref|YP_001445929.1| response regulator [Vibrio harveyi ATCC BAA-1116] gi|269959627|ref|ZP_06174007.1| transcriptional regulator, LuxR family [Vibrio harveyi 1DA3] gi|156526616|gb|ABU71702.1| hypothetical protein VIBHAR_02748 [Vibrio harveyi ATCC BAA-1116] gi|269835550|gb|EEZ89629.1| transcriptional regulator, LuxR family [Vibrio harveyi 1DA3] Length = 214 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ERE + + G +I+E+L LS TVN+Y KLD ++ AIR Sbjct: 147 KDLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRH 206 Query: 232 GYI 234 G + Sbjct: 207 GML 209 >gi|153834026|ref|ZP_01986693.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01] gi|148869670|gb|EDL68656.1| transcriptional regulator, LuxR family [Vibrio harveyi HY01] Length = 214 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A +LT RE L+ G ++ ++AE+L +S T+ ++L KL NR+QAIA Sbjct: 148 APATVDLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAW 207 Query: 228 A 228 A Sbjct: 208 A 208 >gi|111220995|ref|YP_711789.1| LuxR family transcriptional regulator [Frankia alni ACN14a] gi|111148527|emb|CAJ60198.1| Putative LuxR-family transcriptional regulator [Frankia alni ACN14a] Length = 1436 Score = 36.6 bits (83), Expect = 2.8, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A L++RE + L T+ EIA +L +SV+TV +L S KLD R A+ +A Sbjct: 1371 AAGDRLSDRELAVLSYLPTMLTTAEIAAELYVSVNTVKTHLKSIYRKLDVPRRRDAVHRA 1430 >gi|134292526|ref|YP_001116262.1| two component LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135683|gb|ABO56797.1| two component transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 214 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 18/118 (15%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-------SSAARNL 174 VR G +GY++ S A+E I+ A GA T F E R +S L Sbjct: 102 VRAG--ASGYLLKDSP----ASE-IVRAIGAVLAGQTFFSEGLAARMIHASATASPLDRL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T RE L +G +S++IA++ GLSV TV + + KLD I+ A+ I+F Sbjct: 155 TPRERDILDALAEGLSSKQIAQQTGLSVRTVETHRLNLKRKLD----IEGQAELIKFA 208 >gi|311694746|gb|ADP97619.1| HTH-type transcriptional regulator MalT [marine bacterium HP15] Length = 930 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L L G+ ++EIA K+ ++ TV A++ + KL R +A+A+A G Sbjct: 868 LSQRELEVLALIHAGHANKEIAAKMDVAPATVKAHIRNLYGKLGVGRRTEALARARELGL 927 Query: 234 I 234 + Sbjct: 928 L 928 >gi|302519560|ref|ZP_07271902.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302428455|gb|EFL00271.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 234 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 31/49 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L G++ +EIA++L +SV TV +++ + KL NR Sbjct: 173 KLTQRERDVLRLIARGHSYKEIAKELFISVKTVESHVSAVLRKLQLSNR 221 >gi|300784836|ref|YP_003765127.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794350|gb|ADJ44725.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 212 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 8/102 (7%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKR-----SSAARNLTERETSC 181 G+++ + +L V AHG + T L + +R + LT RE Sbjct: 99 GFLLKDAGPNLLVEAVHAAAHGEALVSPAITTRLLAHYARRAPRRVTPPESPLTPRELDV 158 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ G T++EI L +S+ TV ++G+A KL NR + Sbjct: 159 VKAVARGETNDEICRSLVVSMPTVKTHIGAAKRKLGVRNRTE 200 >gi|284046422|ref|YP_003396762.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950643|gb|ADB53387.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 218 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G T+ EIAE+L LSV TV ++ KL R + A+ G Sbjct: 151 ELTARELEVLRLIARGLTNREIAERLFLSVRTVESHRARIQRKLGRSRRSDLVDYALERG 210 Query: 233 YI 234 + Sbjct: 211 LV 212 >gi|254525844|ref|ZP_05137896.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9202] gi|221537268|gb|EEE39721.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9202] Length = 242 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 30/57 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + T RE S LQL +G ++EIA KL S+ V Y+ +K +R + + A+ Sbjct: 180 SFTPREASVLQLVAEGLMNKEIARKLETSIRNVEKYVSRLFIKTGTSSRTELVRYAL 236 >gi|182437557|ref|YP_001825276.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466073|dbj|BAG20593.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 219 Score = 36.6 bits (83), Expect = 2.8, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTE+E L L G+G T+ I E+L L+ T+ Y+ S KL R QA A R Sbjct: 156 GLTEQERRILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVARL 214 >gi|300716380|ref|YP_003741183.1| two component transcriptional regulator, LuxR family [Erwinia billingiae Eb661] gi|299062216|emb|CAX59333.1| Two component transcriptional regulator, LuxR family [Erwinia billingiae Eb661] Length = 205 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 25/97 (25%), Positives = 46/97 (47%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +G+V T + L + + + G Y + +S L++RE S L + G Sbjct: 98 DGFVTKTDDLSELVDAIKLVMRGISYFPQYNRFIAPTTQSEQLEQLSDRELSVLMMLAKG 157 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +++IA++L LS T++ Y +KL+A I+ I Sbjct: 158 MGNKQIADQLVLSEKTISTYKHRLKIKLNAATLIELI 194 >gi|298244512|ref|ZP_06968318.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551993|gb|EFH85858.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1045 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ +E LQ G+T++EIA++L +SV+TV ++ KL NR+QA A Sbjct: 985 LSPQEQRVLQFLVAGHTNQEIAKELVISVNTVKDHVKHLYRKLGVSNRLQAYEAA 1039 >gi|282858615|ref|ZP_06267777.1| transcriptional regulator, LuxR family [Prevotella bivia JCVIHMP010] gi|282588619|gb|EFB93762.1| transcriptional regulator, LuxR family [Prevotella bivia JCVIHMP010] Length = 214 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 37/82 (45%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 C + LE S LT+ ET L G T++EIAEK S HTVN + + Sbjct: 126 CQHITEMLLEPASSLSFERFKLTKTETEILIDIALGMTTKEIAEKRFSSFHTVNTHRKNI 185 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL N +A A+R G I Sbjct: 186 FRKLSVNNANEATRYALRSGLI 207 >gi|182412626|ref|YP_001817692.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177839840|gb|ACB74092.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 204 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 29/56 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L G T+ EIA LG+ + TV +L + VKL NR A A A+ Sbjct: 145 LTPREAEILFWVAQGKTNPEIATILGIGLTTVKKHLEAVFVKLGVENRTSAAALAL 200 >gi|326381911|ref|ZP_08203604.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] gi|326199337|gb|EGD56518.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] Length = 221 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 11/103 (10%) Query: 130 GYVIFTSEFLMLANEV--IIEAHGACYQVITDF-LELFKKRSSAAR--------NLTERE 178 GYV T + LA+ V + E + F L+ F RS +LT RE Sbjct: 106 GYVTKTIDGGELADAVRRVAEGDAVFSPRLAGFVLDSFTGRSPVPEPQLDPELDSLTRRE 165 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+L GYT EIAE+L +SV TV + + K NR Sbjct: 166 MEVLRLLARGYTYREIAEELFISVKTVETHASNVLRKTQQSNR 208 >gi|323357435|ref|YP_004223831.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323273806|dbj|BAJ73951.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 216 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE LA G ++ EIA + LS TV ++ KL +R+Q + A R G Sbjct: 155 ELTEREREIFLLAAAGLSNSEIAAREFLSEATVKTHISRILAKLSLRDRVQLVVFAYRHG 214 Query: 233 YI 234 + Sbjct: 215 LV 216 >gi|319937288|ref|ZP_08011695.1| transcriptional regulator [Coprobacillus sp. 29_1] gi|319807654|gb|EFW04247.1| transcriptional regulator [Coprobacillus sp. 29_1] Length = 67 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L T+++IAE+L +S TV ++ + KL +RIQA+ + I+ Sbjct: 5 LTKREKEIFTLLTFNKTTKQIAEELCISEKTVRNHISNVIQKLGVESRIQAVLELIKMKE 64 Query: 234 I 234 I Sbjct: 65 I 65 >gi|294815185|ref|ZP_06773828.1| Two component transcriptional regulator, LuxR family [Streptomyces clavuligerus ATCC 27064] gi|326443544|ref|ZP_08218278.1| response regulator receiver protein [Streptomyces clavuligerus ATCC 27064] gi|294327784|gb|EFG09427.1| Two component transcriptional regulator, LuxR family [Streptomyces clavuligerus ATCC 27064] Length = 231 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Query: 167 RSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 R+ AAR LT RE + L DG ++ E+AE+L + TV A++ + +L NR+ Sbjct: 156 RAWAARRTLEPLTRRERDVVALVADGLSNAEVAERLHVVEGTVKAHVSAVLARLGLRNRV 215 Query: 223 Q 223 + Sbjct: 216 E 216 >gi|152987185|ref|YP_001347466.1| putative two-component response regulator [Pseudomonas aeruginosa PA7] gi|150962343|gb|ABR84368.1| probable two-component response regulator [Pseudomonas aeruginosa PA7] Length = 207 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE S LQ GY++++I+E++ +S TV+ Y +KL+A + + I A R Sbjct: 147 LSDREVSVLQYLSQGYSNKQISEQMFISNKTVSTYKARLLLKLNAGSLVDLIEFAKRNAL 206 Query: 234 I 234 I Sbjct: 207 I 207 >gi|37521779|ref|NP_925156.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212777|dbj|BAC90151.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 224 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 36/69 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S A +LTERE L L +T+ EIAE+L +S TV+++ KL N + Sbjct: 150 KYSKLAIHLTEREREILSLISQEFTNIEIAERLFISPRTVDSHRARLMQKLGTRNTAGLV 209 Query: 226 AKAIRFGYI 234 A+ +G + Sbjct: 210 RIAMEYGLL 218 >gi|331699089|ref|YP_004335328.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953778|gb|AEA27475.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 227 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 7/70 (10%) Query: 161 LELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 L++F R AA LT RE L+L GY +EIA +L +SV TV ++ S Sbjct: 147 LDVFSDRPGAAPPGDPELDLLTRRERDVLRLLARGYAYKEIAGELFISVKTVETHVSSVL 206 Query: 214 VKLDAVNRIQ 223 K NR + Sbjct: 207 RKTQLSNRYE 216 >gi|323498892|ref|ZP_08103875.1| transcriptional regulator MalT [Vibrio sinaloensis DSM 21326] gi|323316004|gb|EGA69032.1| transcriptional regulator MalT [Vibrio sinaloensis DSM 21326] Length = 902 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIKTA 893 >gi|319794441|ref|YP_004156081.1| LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596904|gb|ADU37970.1| transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 504 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 42/92 (45%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 ++ +++A AC ++ + L+ERE L+ G ++E+A LG+S Sbjct: 413 DQHVVDALLACAMSHAPSRSAAPQQQRGEQALSERELEVLRCISKGENTKEVARALGISP 472 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ +KL+ R A KA G I Sbjct: 473 RTVRTHVERVFLKLECSTRAAATLKAATRGLI 504 >gi|283455737|ref|YP_003360301.1| two-component response regulator [Bifidobacterium dentium Bd1] gi|283102371|gb|ADB09477.1| Two-component response regulator [Bifidobacterium dentium Bd1] Length = 251 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L G +++EIA++L +S+ TV ++ K++A +R+QA+ Sbjct: 191 LTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHILSKINARDRVQAV 242 >gi|290958054|ref|YP_003489236.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260647580|emb|CBG70685.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 297 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 30/49 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L GY +EIA++L +SV TV +++ + KL NR Sbjct: 236 RLTQREREVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNR 284 >gi|239927189|ref|ZP_04684142.1| LuxR family two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291435532|ref|ZP_06574922.1| luxR family two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291338427|gb|EFE65383.1| luxR family two-component response regulator [Streptomyces ghanaensis ATCC 14672] Length = 230 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L L G+G T+ +I ++L L+ TV ++ KL RIQA Sbjct: 163 GLTDREREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQA 214 >gi|227503398|ref|ZP_03933447.1| response regulator [Corynebacterium accolens ATCC 49725] gi|227075901|gb|EEI13864.1| response regulator [Corynebacterium accolens ATCC 49725] Length = 253 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L GY++ EI+E+ +S+ TV ++ K + +R+QA+ A G Sbjct: 181 ELTPREMDILRLMALGYSNTEISEEEFVSMATVKTHVRHVLTKTGSRDRVQAVLYAYTHG 240 Query: 233 YIC 235 + Sbjct: 241 VVT 243 >gi|226305431|ref|YP_002765389.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184546|dbj|BAH32650.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 219 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Query: 160 FLELFKKRSSAAR--------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 L+ F RS+A +LT RE L+L GYT EIAE L +SV TV + + Sbjct: 137 VLDSFTGRSNAPEPQLDPELDSLTPRELEVLRLLARGYTYREIAEDLVISVKTVETHASN 196 Query: 212 ATVKLDAVNR 221 K NR Sbjct: 197 VLRKTQQSNR 206 >gi|213966347|ref|ZP_03394528.1| regulatory protein, LuxR:Response regulator receiver [Corynebacterium amycolatum SK46] gi|213950996|gb|EEB62397.1| regulatory protein, LuxR:Response regulator receiver [Corynebacterium amycolatum SK46] Length = 217 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 3/113 (2%) Query: 124 LGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQV-ITDFLELFKKRSSAARNLTERETS 180 L NGY++ T+ E ++ E + + + T ++ R+ ++ +T+ E Sbjct: 96 LSLGGNGYILKTARPESVIGTIEDVFQGGTVISPISATRLIKTLPSRNISSYKITQAERE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G ++ +IA++LG S T+ +L S K A +R+ KAI G+ Sbjct: 156 VLGLICRGKSNHDIAKELGKSPGTIKKHLSSMFNKFGATSRLDLALKAIDAGF 208 >gi|182679457|ref|YP_001833603.1| LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635340|gb|ACB96114.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 239 Score = 36.6 bits (83), Expect = 2.9, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 31/67 (46%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SSA L+ RE L G +IA LGLS TV +L +L + QAI Sbjct: 171 SSATAKLSHREREILAWTAAGRRQADIAATLGLSERTVENHLRRIRRRLAVMTTAQAIRV 230 Query: 228 AIRFGYI 234 AIR G I Sbjct: 231 AIRNGDI 237 >gi|302535539|ref|ZP_07287881.1| two component system response regulator [Streptomyces sp. C] gi|302444434|gb|EFL16250.1| two component system response regulator [Streptomyces sp. C] Length = 221 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+ERE L L G+G ++ + +L +S TV Y+ KL NR+QA Sbjct: 161 ELSERERGVLALLGEGLSNADAGRRLHMSEATVKTYVSRILAKLGCENRVQA 212 >gi|297193410|ref|ZP_06910808.1| large transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151764|gb|EFH31341.1| large transcriptional regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 141 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S L+ RE +LAG G T+ EIA L LS TV ++ A KL +R Q +A Sbjct: 64 RPSYGDRLSPREREVAELAGTGLTNREIATTLHLSPRTVEQHVARAMRKLGTASR-QHLA 122 Query: 227 KAI 229 + I Sbjct: 123 RII 125 >gi|296118476|ref|ZP_06837054.1| putative regulatory protein, LuxR [Corynebacterium ammoniagenes DSM 20306] gi|295968375|gb|EFG81622.1| putative regulatory protein, LuxR [Corynebacterium ammoniagenes DSM 20306] Length = 304 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 36/60 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ +E + L + G + E+A +L LS+ TV +++ S KL+A +R++A+ A+ G Sbjct: 225 GLSRQELAVLSVLCCGVSDAEVANRLHLSIRTVQSHISSLRKKLNASSRLEAVVIALGRG 284 >gi|261252640|ref|ZP_05945213.1| BarA-associated response regulator UvrY [Vibrio orientalis CIP 102891] gi|260936031|gb|EEX92020.1| BarA-associated response regulator UvrY [Vibrio orientalis CIP 102891] Length = 188 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE + + G +I+E+L LS TVN+Y KLD ++ AIR G Sbjct: 122 DLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLDISGDVELTHLAIRHG 181 Query: 233 YI 234 I Sbjct: 182 MI 183 >gi|290958801|ref|YP_003489983.1| two component response regulator [Streptomyces scabiei 87.22] gi|260648327|emb|CBG71438.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 220 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +T RE L G T+ EIA+ L +S+ TV +L S KL A NR++ Sbjct: 156 VTAREEQVLLSVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVE 205 >gi|298345245|ref|YP_003717932.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|315655667|ref|ZP_07908565.1| two component system response regulator [Mobiluncus curtisii ATCC 51333] gi|298235306|gb|ADI66438.1| response regulator [Mobiluncus curtisii ATCC 43063] gi|315489731|gb|EFU79358.1| two component system response regulator [Mobiluncus curtisii ATCC 51333] Length = 233 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LTERE ++L G+ +EIA +L +SV TV ++ S KL NR + Sbjct: 172 SLTEREFEVMRLIARGFAYKEIASELYISVKTVETHVSSVLRKLQLSNRYE 222 >gi|158137916|gb|ABW17380.1| LuxR-like protein [Pseudomonas putida] Length = 214 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 2/50 (4%) Query: 173 NLTERETS-CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+ERE CL L G T+ E AE+L L V+TV +YL A +KL R Sbjct: 155 KLSERECQVCLGLLA-GLTAPEQAERLALKVNTVESYLRRAAIKLGISGR 203 >gi|326331931|ref|ZP_08198217.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325950244|gb|EGD42298.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 219 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G + +IA++L LS TV ++ + KL NR++ AI G Sbjct: 155 TLTDRETEILKLVAKGLSYRQIADRLVLSHRTVQNHVQNTLRKLQMHNRVELTRYAIEQG 214 >gi|313835666|gb|EFS73380.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928337|gb|EFS92168.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314970267|gb|EFT14365.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328908080|gb|EGG27839.1| putative two component response regulator [Propionibacterium sp. P08] Length = 218 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +RE +G T++ IA +L +S TV A+L + KLD +R++ R GY+ Sbjct: 158 DREREVAVAVAEGLTNDAIAAQLNISASTVKAHLSTIQTKLDVDSRVRIAVLVERAGYLA 217 >gi|306836360|ref|ZP_07469338.1| two component system response regulator [Corynebacterium accolens ATCC 49726] gi|304567720|gb|EFM43307.1| two component system response regulator [Corynebacterium accolens ATCC 49726] Length = 253 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L GY++ EI+E+ +S+ TV ++ K + +R+QA+ A G Sbjct: 181 ELTPREMDILRLMALGYSNTEISEEEFVSMATVKTHVRHVLTKTGSRDRVQAVLYAYTHG 240 Query: 233 YIC 235 + Sbjct: 241 VVT 243 >gi|304390804|ref|ZP_07372756.1| two component system response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315656419|ref|ZP_07909308.1| two component system response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|304325687|gb|EFL92933.1| two component system response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492978|gb|EFU82580.1| two component system response regulator [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 233 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 30/51 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LTERE ++L G+ +EIA +L +SV TV ++ S KL NR + Sbjct: 172 SLTEREFEVMRLIARGFAYKEIASELYISVKTVETHVSSVLRKLQLSNRYE 222 >gi|269961289|ref|ZP_06175655.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269833955|gb|EEZ88048.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 214 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A +LT RE L+ G ++ ++AE+L +S T+ ++L KL NR+QAIA Sbjct: 148 APATVDLTIRELQVLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAW 207 Query: 228 A 228 A Sbjct: 208 A 208 >gi|254505455|ref|ZP_05117602.1| transcriptional regulator, LuxR family protein [Vibrio parahaemolyticus 16] gi|219551572|gb|EED28550.1| transcriptional regulator, LuxR family protein [Vibrio parahaemolyticus 16] Length = 855 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI A Sbjct: 792 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIKTA 846 >gi|218889475|ref|YP_002438339.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|218769698|emb|CAW25458.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 214 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G+TS E+AE+L +SV TV+ Y ++ A + + AI G Sbjct: 144 SLTPRERDVLLPLVRGHTSREVAEQLEVSVKTVDLYRARVMKRMQAQTLPELVGMAIAAG 203 Query: 233 YI 234 + Sbjct: 204 LV 205 >gi|254237071|ref|ZP_04930394.1| hypothetical protein PACG_03108 [Pseudomonas aeruginosa C3719] gi|126169002|gb|EAZ54513.1| hypothetical protein PACG_03108 [Pseudomonas aeruginosa C3719] Length = 214 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G+TS E+AE+L +SV TV+ Y ++ A + + AI G Sbjct: 144 SLTPRERDVLLPLVRGHTSREVAEQLEVSVKTVDLYRARVMKRMQAQTLPELVGMAIAAG 203 Query: 233 YI 234 + Sbjct: 204 LV 205 >gi|146299747|ref|YP_001194338.1| two component LuxR family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154165|gb|ABQ05019.1| two component transcriptional regulator, LuxR family [Flavobacterium johnsoniae UW101] Length = 213 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 36/71 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +K+ S L+ RE L L Y + EIAEK +S++TVN + + KL+A N Sbjct: 142 IEKQVSNLTELSSREKEILVLIAHEYNTAEIAEKTFISLNTVNTHRRNLLSKLNAKNTAG 201 Query: 224 AIAKAIRFGYI 234 + A+ G + Sbjct: 202 LVKYAVENGLV 212 >gi|328755742|gb|EGF69358.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] Length = 206 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 25/59 (42%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+LA G + IA +L LSV TV ++ SA K A NR +A A R G Sbjct: 146 LSGREREILRLAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRG 204 >gi|303241953|ref|ZP_07328446.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302590508|gb|EFL60263.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 205 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%) Query: 144 EVIIEAH--GACYQVI-TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 +VI + H G+ ++VI D+ L ++ N TE+E L GYT E+I EKL Sbjct: 115 DVIRKTHKTGSAFEVILKDYARLKEQEQIKDLNFTEKE--VFALIEKGYTREQIQEKLNK 172 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 S T+ + KL + +A+ K R G Sbjct: 173 SESTLKKQIKQILAKLGVKSSKEAVQKVKRKG 204 >gi|299069217|emb|CBJ40477.1| transcription regulator for hrp genes expression [Ralstonia solanacearum CMR15] Length = 166 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT R+ L+ A G ++ EIA+ L +SV TV +++ ++LDA NR + A Sbjct: 99 LTPRQHDILREAAHGKSNVEIAQTLHISVETVKSHVRQILMRLDARNRTELAA 151 >gi|295396479|ref|ZP_06806640.1| possible ATP-dependent transcription regulator LuxR [Brevibacterium mcbrellneri ATCC 49030] gi|294970671|gb|EFG46585.1| possible ATP-dependent transcription regulator LuxR [Brevibacterium mcbrellneri ATCC 49030] Length = 851 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ERET LQL G ++ +IA+ + L V+TV +L + +L NR + A + G Sbjct: 790 MSERETQILQLLASGKSNRQIADSVFLGVNTVKWHLKNLYRRLGVSNRDDCVKVARQRGM 849 Query: 234 I 234 + Sbjct: 850 V 850 >gi|291450698|ref|ZP_06590088.1| two-component system response regulator [Streptomyces albus J1074] gi|291353647|gb|EFE80549.1| two-component system response regulator [Streptomyces albus J1074] Length = 204 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L L G T+ EIA +L + TV +++ + K +R QA+ A Sbjct: 139 AARLTDREREVLHLMATGLTNAEIAARLTVGPATVKSHVAAVLAKTGTRDRTQAVIAAYE 198 Query: 231 FG 232 G Sbjct: 199 AG 200 >gi|49079490|gb|AAT49898.1| PA3045 [synthetic construct] Length = 208 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 35/57 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE S LQ GY++++I+E++ +S TV+ Y +KL+A + + I A R Sbjct: 147 LSDREVSVLQYLSQGYSNKQISEQMFISNKTVSTYKARLLLKLNAGSLVDLIEFAKR 203 >gi|322832016|ref|YP_004212043.1| LuxR family transcriptional regulator [Rahnella sp. Y9602] gi|321167217|gb|ADW72916.1| two component transcriptional regulator, LuxR family [Rahnella sp. Y9602] Length = 216 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISANGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|315445195|ref|YP_004078074.1| HD-GYP domain-containing protein [Mycobacterium sp. Spyr1] gi|315263498|gb|ADU00240.1| HD-GYP domain-containing protein [Mycobacterium sp. Spyr1] Length = 519 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 35/70 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ S+ LT RE L L G +++EIA LG+S T ++ K+ A NRI A Sbjct: 447 RRVSARPGGLTPREIEVLCLVARGASNKEIAATLGISGKTARNHVERTYAKIGATNRIGA 506 Query: 225 IAKAIRFGYI 234 A+ G I Sbjct: 507 SMFALGHGLI 516 >gi|300311885|ref|YP_003775977.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] gi|300074670|gb|ADJ64069.1| LuxR family two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 216 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 7/111 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERETSC 181 NGY+ S L + HG Y + + ++++ + + LT R+ Sbjct: 100 NGYLFKDSAATELEKALYEVKHGRQYLDSHISREALDNYMKRVAQNGTPVEVLTPRQREI 159 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL +G ++EIA +L +S T+ + +LD + + AIR G Sbjct: 160 LQLIAEGNNTKEIAYQLNVSAKTIETHRAQLMERLDIRDVPGLVRYAIRTG 210 >gi|300786703|ref|YP_003766994.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796217|gb|ADJ46592.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 216 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 25/60 (41%), Positives = 31/60 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G + IAE+L LS TV ++ KL +R QAIAKA G Sbjct: 152 RLTLREQEILRLVARGMGNASIAEELVLSQKTVRNHVSHIFRKLRVTDRSQAIAKAKEAG 211 >gi|289641751|ref|ZP_06473909.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508395|gb|EFD29336.1| transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 422 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+ DG T+ IA +L +S TV ++ KL A NR +A+++ Sbjct: 345 LTRREIEVLRHMADGATNARIATRLMVSEGTVKVHVKHILRKLGATNRAEAVSR 398 >gi|212712307|ref|ZP_03320435.1| hypothetical protein PROVALCAL_03393 [Providencia alcalifaciens DSM 30120] gi|212685053|gb|EEB44581.1| hypothetical protein PROVALCAL_03393 [Providencia alcalifaciens DSM 30120] Length = 216 Score = 36.6 bits (83), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSKLLEKVNASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|329962632|ref|ZP_08300580.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] gi|328529663|gb|EGF56561.1| response regulator receiver domain protein [Bacteroides fluxus YIT 12057] Length = 217 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 6/87 (6%) Query: 152 ACYQVITDFLELFKKRSSA---ARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 AC + + + +L +RSS+ R++ T RE LQ G + EIA+ L +S +TV Sbjct: 130 ACPRFTSIYQKL--RRSSSELQPRDVPTRRERDVLQAVAKGMNTHEIADLLKISENTVET 187 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + K A N I + KAI G++ Sbjct: 188 FRRRLISKFGAKNAIDMVLKAISQGWV 214 >gi|311693928|gb|ADP96801.1| two-component response regulator [marine bacterium HP15] Length = 218 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 28/62 (45%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE GYTS EIAE+L +SV T++ Y +L A AI G Sbjct: 147 TLTRRERDVFLPLAQGYTSREIAEQLDVSVKTIDLYRARVMKRLGADRLPDVTGTAIAAG 206 Query: 233 YI 234 + Sbjct: 207 LL 208 >gi|297538851|ref|YP_003674620.1| two component LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297258198|gb|ADI30043.1| two component transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 202 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 27/47 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LTERE + LA G++++EIA +LG+S TV + K A N Sbjct: 143 LTERERDVMALAVQGHSNKEIARQLGISHRTVEIHKSKVMHKTGATN 189 >gi|284032655|ref|YP_003382586.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811948|gb|ADB33787.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 212 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L KR+ LT RE L L +G + IA+KL +S V+ ++G+ +KLD Sbjct: 137 QLMTKRNDPLDRLTPREREVLALMAEGLGNAAIADKLVISEGAVHKHVGNVFLKLD 192 >gi|260778284|ref|ZP_05887177.1| transcriptional activator of maltose regulon MalT [Vibrio coralliilyticus ATCC BAA-450] gi|260606297|gb|EEX32582.1| transcriptional activator of maltose regulon MalT [Vibrio coralliilyticus ATCC BAA-450] Length = 855 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI A Sbjct: 792 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIKTA 846 >gi|258650732|ref|YP_003199888.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553957|gb|ACV76899.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 214 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ DG ++ EIA +L L+ TV ++ KL +R+QA+ A R G Sbjct: 151 ELTGRELDVLRCLADGRSNAEIAGELFLAETTVKTHVARILAKLGVRDRVQAVVIAHRCG 210 >gi|297203493|ref|ZP_06920890.1| two component transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197714466|gb|EDY58500.1| two component transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 239 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 29/62 (46%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L GYT+ IA L LS TV ++ KL +R +A +A G Sbjct: 178 LTERERQVLDFLARGYTNRRIARTLVLSEKTVRNHVSHLLAKLQVNDRTEAALRAKEAGL 237 Query: 234 IC 235 C Sbjct: 238 GC 239 >gi|238920516|ref|YP_002934031.1| transcriptional regulator RcsB [Edwardsiella ictaluri 93-146] gi|48256979|gb|AAT41676.1| positive response regulator of capsular synthesis [Edwardsiella ictaluri] gi|238870085|gb|ACR69796.1| positive response regulator of capsular synthesis [Edwardsiella ictaluri 93-146] Length = 217 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKINASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|56418899|ref|YP_146217.1| hypothetical protein GK0364 [Geobacillus kaustophilus HTA426] gi|56378741|dbj|BAD74649.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 549 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L+L G ++ EI+E+L +SVHTV ++ + K+ +R Q IA Sbjct: 482 SEQLTAREMDVLELLIQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIA 537 >gi|307328434|ref|ZP_07607610.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886007|gb|EFN17017.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 234 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 30/60 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R L+ RE L L GDG T+ +I ++L LS TV ++ KL RIQA Sbjct: 158 EPRDEVLAGLSPREREILVLIGDGLTNRQIGKRLFLSEKTVKNHISRLLAKLGVERRIQA 217 >gi|296128716|ref|YP_003635966.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296020531|gb|ADG73767.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 219 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L G ++EIA +L +S TV ++ + KL +R+QA+ A G Sbjct: 158 LTEREQDVLALVARGLNNDEIAAELVVSRATVKTHVSNLLAKLGLRDRVQAVVYAHEHG 216 >gi|284042892|ref|YP_003393232.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947113|gb|ADB49857.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 932 Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT E +LA +G ++ EIAE L ++ TV +LG A KL +N +A A Sbjct: 866 SGAEALTPSERRTAELAAEGLSNREIAEALWVTRKTVEHHLGHAYGKL-GINSRSGLADA 924 Query: 229 I 229 + Sbjct: 925 L 925 >gi|229489617|ref|ZP_04383480.1| response regulator [Rhodococcus erythropolis SK121] gi|229323714|gb|EEN89472.1| response regulator [Rhodococcus erythropolis SK121] Length = 219 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Query: 160 FLELFKKRSSAAR--------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 L+ F RS+A +LT RE L+L GYT EIAE L +SV TV + + Sbjct: 137 VLDSFTGRSNAPEPQLDPELDSLTPRELEVLRLLARGYTYREIAEDLVISVKTVETHASN 196 Query: 212 ATVKLDAVNR 221 K NR Sbjct: 197 VLRKTQQSNR 206 >gi|226327844|ref|ZP_03803362.1| hypothetical protein PROPEN_01725 [Proteus penneri ATCC 35198] gi|225203548|gb|EEG85902.1| hypothetical protein PROPEN_01725 [Proteus penneri ATCC 35198] Length = 218 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKVNANGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|255600849|ref|XP_002537550.1| conserved hypothetical protein [Ricinus communis] gi|223515958|gb|EEF24832.1| conserved hypothetical protein [Ricinus communis] Length = 219 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 30/60 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A L++RE L G T+ EI L +S +TV +L KLD R QA+AK Sbjct: 149 SMAQGGLSDREQEILHWVRSGKTNLEIGMILNISANTVKNHLKRIFQKLDVSCRAQAVAK 208 >gi|218134363|ref|ZP_03463167.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC 43243] gi|217989748|gb|EEC55759.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC 43243] Length = 218 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 35/63 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + +LT+RE L+L +G + EIA +L +S TV ++ + K++ +R QA Sbjct: 149 TGKVNDLTKRELQVLKLIANGMFNREIAVQLKISERTVKNHISNIFRKINVSDRTQAAVF 208 Query: 228 AIR 230 AI+ Sbjct: 209 AIK 211 >gi|194365353|ref|YP_002027963.1| LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348157|gb|ACF51280.1| transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 234 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 28/61 (45%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+ G EIA LGLS TV +L A +L QA+ A R G Sbjct: 172 LSAREREVLRWVAAGRRQAEIAATLGLSARTVENHLRRARQRLGVATTAQAVRAASRRGE 231 Query: 234 I 234 I Sbjct: 232 I 232 >gi|104781941|ref|YP_608439.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95110928|emb|CAK15646.1| putative transcriptional regulator, luxR family [Pseudomonas entomophila L48] Length = 235 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L G +IA LGLSV TV +L +A +L QAI A+ G Sbjct: 174 LSERERQVLAWTAAGQRQADIAATLGLSVRTVENHLRAARRRLGVATTAQAIRIALGSGV 233 Query: 234 I 234 + Sbjct: 234 L 234 >gi|39934323|ref|NP_946599.1| two-component LuxR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39648171|emb|CAE26691.1| two-component transcriptional regulator, LuxR family [Rhodopseudomonas palustris CGA009] Length = 308 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 28/53 (52%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 SA LT RE+ L G T+ +IA+ LGLS TV+ +L KL NR Sbjct: 242 SAEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294 >gi|329939783|ref|ZP_08289084.1| response regulator [Streptomyces griseoaurantiacus M045] gi|329301353|gb|EGG45248.1| response regulator [Streptomyces griseoaurantiacus M045] Length = 208 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE+ + L G ++ EIAEK+ ++ TV +++ KL R QA+A A G Sbjct: 132 TLTPRESEVIVLLAQGKSNVEIAEKMSITTATVRSHVHHLLRKLGVGTRAQAVAFAYESG 191 Query: 233 YIC 235 I Sbjct: 192 LIS 194 >gi|325970171|ref|YP_004246362.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy] gi|324025409|gb|ADY12168.1| two component transcriptional regulator, LuxR family [Spirochaeta sp. Buddy] Length = 227 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT +E +QL G G +++EI ++ S TV Y+ + KLD +R Q AI+ Sbjct: 156 KALTAQELRIMQLIGKGLSNKEIMTEVNFSEGTVRNYISNILKKLDLRDRTQIAILAIQS 215 Query: 232 GYI 234 G + Sbjct: 216 GLM 218 >gi|319442007|ref|ZP_07991163.1| hypothetical protein CvarD4_09626 [Corynebacterium variabile DSM 44702] Length = 204 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE L+ AG G + E+IA ++ L+ T YL +A K A R +A Sbjct: 144 LTEREAEVLEAAGRGGSVEQIAAQVHLASGTTRNYLSAAMGKTGASTRFEA 194 >gi|302547454|ref|ZP_07299796.1| LuxR-family transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302465072|gb|EFL28165.1| LuxR-family transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 927 Score = 36.6 bits (83), Expect = 3.1, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+E E LA GY + EIA++L ++V TV +L K+ NR Q + A Y Sbjct: 865 LSESERRVAMLAAQGYANREIADRLFITVSTVEQHLTRVYRKMGIRNREQLLQGAHAVSY 924 >gi|302541819|ref|ZP_07294161.1| putative transcriptional regulator, LuxR family [Streptomyces hygroscopicus ATCC 53653] gi|302459437|gb|EFL22530.1| putative transcriptional regulator, LuxR family [Streptomyces himastatinicus ATCC 53653] Length = 100 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +L+ RE +L GDG ++ IA +L ++ TV A++ KL +R+QA Sbjct: 34 SLSNREFDVFRLLGDGESNRSIASRLAVTERTVKAHVAQILTKLHVESRLQA 85 >gi|294054091|ref|YP_003547749.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293613424|gb|ADE53579.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 212 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G+ +++A++LG+S TV+ Y G+ KL N AIA AIR G Sbjct: 152 LSSRERQVLDLMARGFVKKQVADELGISHATVSEYTGNIYKKLQVPNIAAAIATAIRKGL 211 Query: 234 I 234 I Sbjct: 212 I 212 >gi|239978812|ref|ZP_04701336.1| two-component system response regulator [Streptomyces albus J1074] Length = 213 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE L L G T+ EIA +L + TV +++ + K +R QA+ A Sbjct: 148 AARLTDREREVLHLMATGLTNAEIAARLTVGPATVKSHVAAVLAKTGTRDRTQAVIAAYE 207 Query: 231 FG 232 G Sbjct: 208 AG 209 >gi|258510399|ref|YP_003183833.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477125|gb|ACV57444.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 224 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 24/41 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 S A L+ RET L L GYT+ E+A+ L +SV TV + Sbjct: 144 SRTAERLSPRETEVLVLLAQGYTNREVADALHISVKTVETH 184 >gi|222055689|ref|YP_002538051.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32] gi|221564978|gb|ACM20950.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32] Length = 216 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 17/59 (28%), Positives = 33/59 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NL+++E + G ++EIA++L +S TV ++ K+D V+R Q + A++ Sbjct: 156 NLSKKEQDIVAFIAQGLKNKEIAQRLCISEQTVKTHISRIFKKVDVVSRSQLVPLALKL 214 >gi|145224867|ref|YP_001135545.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK] gi|145217353|gb|ABP46757.1| metal dependent phosphohydrolase [Mycobacterium gilvum PYR-GCK] Length = 519 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 35/70 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ S+ LT RE L L G +++EIA LG+S T ++ K+ A NRI A Sbjct: 447 RRVSARPGGLTPREIEVLCLVARGASNKEIAATLGISGKTARNHVERTYAKIGATNRIGA 506 Query: 225 IAKAIRFGYI 234 A+ G I Sbjct: 507 SMFALGHGLI 516 >gi|134099110|ref|YP_001104771.1| two component LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133911733|emb|CAM01846.1| two component transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] Length = 209 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE L L +G ++IA+KL S TV L T + + NR A++ AIR G Sbjct: 149 VTNREIDVLGLVSEGNELKDIAQKLHFSERTVKNILYQFTSRFNLHNRAHAVSYAIRSGL 208 Query: 234 I 234 I Sbjct: 209 I 209 >gi|186470703|ref|YP_001862021.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184197012|gb|ACC74975.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 219 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 31/53 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 NL+ RE L +G ++EIA KL +SV TV ++ KLD +R++A+ Sbjct: 152 NLSVREQEVLDYLVEGMCNKEIARKLDISVGTVKVHVKHLLHKLDLHSRVEAV 204 >gi|77919001|ref|YP_356816.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77545084|gb|ABA88646.1| transcriptional regulator, LuxR family [Pelobacter carbinolicus DSM 2380] Length = 214 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 34/59 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A NLT+ E L+ +G T+ EIA+ +S+ T+ ++ KL+ NR++A+A A Sbjct: 150 AEHNLTKTEIKVLKHIAEGKTNNEIAQIQFVSIETIKTHVQRIFKKLEVGNRMEAVAVA 208 >gi|53718880|ref|YP_107866.1| putative transcriptional regulator [Burkholderia pseudomallei K96243] gi|52209294|emb|CAH35239.1| putative transcriptional regulator [Burkholderia pseudomallei K96243] Length = 302 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L +++ S L+ R+ ++ G T++ IA LG+S TV +L S +L A NR Sbjct: 170 QLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNR 229 Query: 222 IQAIA 226 A+A Sbjct: 230 AAAVA 234 >gi|17549072|ref|NP_522412.1| transcription regulator PRHJ transcription regulator protein [Ralstonia solanacearum GMI1000] gi|3688537|emb|CAA07191.1| PrhJ [Ralstonia solanacearum] gi|17431323|emb|CAD18002.1| transcription regulator prhj transcription regulator protein [Ralstonia solanacearum GMI1000] gi|219566941|dbj|BAH04972.1| transcription regulator [Ralstonia solanacearum] Length = 174 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT R+ L+ A G ++ EIA+ L +SV TV +++ ++LDA NR + A Sbjct: 107 LTPRQHDILREAAHGKSNVEIAQTLHISVETVKSHVRQILMRLDARNRTELAA 159 >gi|121603022|ref|YP_980351.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120591991|gb|ABM35430.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 219 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT R+ L+L G +++ IA KL LS HT+ ++ + +A+ R +A+ + R G Sbjct: 153 SLTPRQYEVLKLLAQGLSNKAIAFKLHLSEHTIRNHVVAILRHFNALTRTEAVMASQRLG 212 Query: 233 YI 234 + Sbjct: 213 LL 214 >gi|328885899|emb|CCA59138.1| transcriptional regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 244 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 28/62 (45%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L+L +G + EIA K S TV L +L NR A+ A+R G Sbjct: 183 TLAPREADMLRLVSEGLDTAEIARKTSYSERTVKNVLHEVITRLQLRNRTHAVGYALRNG 242 Query: 233 YI 234 I Sbjct: 243 LI 244 >gi|261209952|ref|ZP_05924252.1| transcriptional regulator LuxR family [Vibrio sp. RC341] gi|260841017|gb|EEX67549.1| transcriptional regulator LuxR family [Vibrio sp. RC341] Length = 214 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 32/54 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +LT RE L+ G ++ +IAE L +S TV ++L KL+ NR++AIA Sbjct: 154 DLTAREIQILRCLQTGASNMQIAESLFISEFTVKSHLYQIFKKLNVKNRVKAIA 207 >gi|302559284|ref|ZP_07311626.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302476902|gb|EFL39995.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 223 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G ++ EIA +L LS TV ++G KL +R+Q + A G Sbjct: 156 RLTGREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYETG 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|256377650|ref|YP_003101310.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921953|gb|ACU37464.1| transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 206 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE + L L +G + EIA++L S TV + T + NR A+A A+R G Sbjct: 145 GLSERERAVLALVAEGRETGEIAKELCYSPRTVTTVVHDITRRFRLRNRAHAVAYALRAG 204 Query: 233 YI 234 + Sbjct: 205 LL 206 >gi|271965569|ref|YP_003339765.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508744|gb|ACZ87022.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 216 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ G T+ EIA L LS TV ++G KL +R+QA+ A G Sbjct: 153 LTDREREVLRHIAQGETNAEIAGCLFLSEGTVKTHVGRILAKLQLRDRVQAVIWAYEHGQ 212 Query: 234 I 234 I Sbjct: 213 I 213 >gi|91225640|ref|ZP_01260714.1| transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|269967600|ref|ZP_06181651.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] gi|91189760|gb|EAS76034.1| transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|269827795|gb|EEZ82078.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] Length = 214 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A +LT RE L+ G ++ ++AE+L +S T+ ++L KL NR+QAIA Sbjct: 148 APATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAW 207 Query: 228 A 228 A Sbjct: 208 A 208 >gi|557022|gb|AAA50358.1| putative transcription factor; similar to E. coli NarL, Swiss-Prot Accession Number P10957 [Nostoc sp. PCC 7120] Length = 219 Score = 36.6 bits (83), Expect = 3.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +SS+ LT RE +L G T+ EIAEKL ++ ++V L KL R + +A Sbjct: 151 KSSSPSPLTPRELQIAELVAQGLTNAEIAEKLWITQNSVKQALKRMFRKLGVSARAEMVA 210 Query: 227 K 227 + Sbjct: 211 R 211 >gi|308380381|ref|ZP_07669177.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu011] gi|308361672|gb|EFP50523.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu011] Length = 1199 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 36/68 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ +S LT E L G+G +++EI +L +S TV+++L KL +R+Q Sbjct: 1123 KRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQL 1182 Query: 225 IAKAIRFG 232 +A R G Sbjct: 1183 AQQAARRG 1190 >gi|298373031|ref|ZP_06983021.1| transcriptional regulator, LuxR family [Bacteroidetes oral taxon 274 str. F0058] gi|298275935|gb|EFI17486.1| transcriptional regulator, LuxR family [Bacteroidetes oral taxon 274 str. F0058] Length = 188 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 29/53 (54%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + SS LT RE L +G T++EIA+ L LSVHT+ + + + KL Sbjct: 116 LNQSSSPEEALTIREQEVLVRIVNGLTNKEIADNLNLSVHTITTHRRNISTKL 168 >gi|294994407|ref|ZP_06800098.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 210] gi|326904100|gb|EGE51033.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis W-148] Length = 1137 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 36/68 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ +S LT E L G+G +++EI +L +S TV+++L KL +R+Q Sbjct: 1061 KRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQL 1120 Query: 225 IAKAIRFG 232 +A R G Sbjct: 1121 AQQAARRG 1128 >gi|289762657|ref|ZP_06522035.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] gi|289710163|gb|EFD74179.1| transcriptional regulator [Mycobacterium tuberculosis GM 1503] Length = 885 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 36/68 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ +S LT E L G+G +++EI +L +S TV+++L KL +R+Q Sbjct: 809 KRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQL 868 Query: 225 IAKAIRFG 232 +A R G Sbjct: 869 AQQAARRG 876 >gi|283832337|ref|ZP_06352078.1| DNA-binding response regulator, LuxR family [Citrobacter youngae ATCC 29220] gi|291071985|gb|EFE10094.1| DNA-binding response regulator, LuxR family [Citrobacter youngae ATCC 29220] Length = 216 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|260205795|ref|ZP_05773286.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis K85] gi|289575185|ref|ZP_06455412.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis K85] gi|289539616|gb|EFD44194.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis K85] Length = 1137 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 36/68 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ +S LT E L G+G +++EI +L +S TV+++L KL +R+Q Sbjct: 1061 KRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQL 1120 Query: 225 IAKAIRFG 232 +A R G Sbjct: 1121 AQQAARRG 1128 >gi|253798434|ref|YP_003031435.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 1435] gi|289553722|ref|ZP_06442932.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 605] gi|297635092|ref|ZP_06952872.1| transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis KZN 4207] gi|297732083|ref|ZP_06961201.1| transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis KZN R506] gi|313659419|ref|ZP_07816299.1| transcriptional regulator, luxR-family protein [Mycobacterium tuberculosis KZN V2475] gi|253319937|gb|ACT24540.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 1435] gi|289438354|gb|EFD20847.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 605] gi|328458202|gb|AEB03625.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis KZN 4207] Length = 1137 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 36/68 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ +S LT E L G+G +++EI +L +S TV+++L KL +R+Q Sbjct: 1061 KRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQL 1120 Query: 225 IAKAIRFG 232 +A R G Sbjct: 1121 AQQAARRG 1128 >gi|224542843|ref|ZP_03683382.1| hypothetical protein CATMIT_02035 [Catenibacterium mitsuokai DSM 15897] gi|224524239|gb|EEF93344.1| hypothetical protein CATMIT_02035 [Catenibacterium mitsuokai DSM 15897] Length = 224 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 34/65 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++ E +Q G G +++EIA+KL LS TV YL S KL+ +R Q A+ Sbjct: 154 VETLSKPEWKVIQHVGYGLSNKEIAQKLFLSEGTVRNYLSSILSKLNLRDRTQLAIWAVE 213 Query: 231 FGYIC 235 G + Sbjct: 214 SGLMT 218 >gi|218754218|ref|ZP_03533014.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis GM 1503] Length = 898 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 36/68 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ +S LT E L G+G +++EI +L +S TV+++L KL +R+Q Sbjct: 822 KRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQL 881 Query: 225 IAKAIRFG 232 +A R G Sbjct: 882 AQQAARRG 889 >gi|212716361|ref|ZP_03324489.1| hypothetical protein BIFCAT_01279 [Bifidobacterium catenulatum DSM 16992] gi|212660614|gb|EEB21189.1| hypothetical protein BIFCAT_01279 [Bifidobacterium catenulatum DSM 16992] Length = 228 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + Sbjct: 168 LSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTE 217 >gi|167836083|ref|ZP_02462966.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 279 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L +++ S L+ R+ ++ G T++ IA LG+S TV +L S +L A NR Sbjct: 147 QLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNR 206 Query: 222 IQAIA 226 A+A Sbjct: 207 AAAVA 211 >gi|153808058|ref|ZP_01960726.1| hypothetical protein BACCAC_02344 [Bacteroides caccae ATCC 43185] gi|149129667|gb|EDM20881.1| hypothetical protein BACCAC_02344 [Bacteroides caccae ATCC 43185] Length = 184 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 +++ E +Q+ G +EEIA+KL LS HTV ++ S +KL Sbjct: 122 ISDAEMRVMQMVYQGANNEEIADKLYLSPHTVKNHIKSVYIKL 164 >gi|121638369|ref|YP_978593.1| LuxR family transcriptional regulator [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990863|ref|YP_002645550.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] gi|121494017|emb|CAL72495.1| Probable transcriptional regulatory protein (luxR-family) [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773976|dbj|BAH26782.1| putative transcriptional regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 1137 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 36/68 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ +S LT E L G+G +++EI +L +S TV+++L KL +R+Q Sbjct: 1061 KRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQL 1120 Query: 225 IAKAIRFG 232 +A R G Sbjct: 1121 AQQAARRG 1128 >gi|90410965|ref|ZP_01218979.1| putative nitrate/nitrite response regulator protein [Photobacterium profundum 3TCK] gi|90328178|gb|EAS44489.1| putative nitrate/nitrite response regulator protein [Photobacterium profundum 3TCK] Length = 194 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query: 151 GACY-QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 G Y ++ + LE ++ +LT+RET LQ GY +++IA+ L +S TV ++ Sbjct: 110 GKAYSNIVREHLESNTEQDCLLSSLTDRETQILQEVAKGYRNKQIADALFISEATVKVHM 169 Query: 210 GSATVKLDAVNRIQA 224 S KL +R A Sbjct: 170 KSLLKKLQVKSRTAA 184 >gi|308232152|ref|ZP_07415096.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu001] gi|308371029|ref|ZP_07423604.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu003] gi|308373427|ref|ZP_07432269.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu005] gi|308374593|ref|ZP_07436663.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu006] gi|308214848|gb|EFO74247.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu001] gi|308330043|gb|EFP18894.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu003] gi|308337687|gb|EFP26538.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu005] gi|308341368|gb|EFP30219.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu006] Length = 1109 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 36/68 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ +S LT E L G+G +++EI +L +S TV+++L KL +R+Q Sbjct: 1033 KRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQL 1092 Query: 225 IAKAIRFG 232 +A R G Sbjct: 1093 AQQAARRG 1100 >gi|15842015|ref|NP_337052.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis CDC1551] gi|289746269|ref|ZP_06505647.1| transcriptional regulator, luxR family [Mycobacterium tuberculosis 02_1987] gi|308372247|ref|ZP_07427963.2| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu004] gi|308405230|ref|ZP_07669460.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu012] gi|13882292|gb|AAK46866.1| transcriptional regulator, LuxR family [Mycobacterium tuberculosis CDC1551] gi|289686797|gb|EFD54285.1| transcriptional regulator, luxR family [Mycobacterium tuberculosis 02_1987] gi|308333885|gb|EFP22736.1| putative transcriptional regulator, LuxR family [Mycobacterium tuberculosis SUMu004] gi|308365275|gb|EFP54126.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu012] gi|323718928|gb|EGB28079.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis CDC1551A] Length = 1113 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 36/68 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ +S LT E L G+G +++EI +L +S TV+++L KL +R+Q Sbjct: 1037 KRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQL 1096 Query: 225 IAKAIRFG 232 +A R G Sbjct: 1097 AQQAARRG 1104 >gi|15609625|ref|NP_217004.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Rv] gi|31793667|ref|NP_856160.1| LuxR family transcriptional regulator [Mycobacterium bovis AF2122/97] gi|148662323|ref|YP_001283846.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148823685|ref|YP_001288439.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis F11] gi|215404423|ref|ZP_03416604.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis 02_1987] gi|306804237|ref|ZP_07440905.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu008] gi|306808806|ref|ZP_07445474.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu007] gi|306968638|ref|ZP_07481299.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu009] gi|306972870|ref|ZP_07485531.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu010] gi|2791528|emb|CAA16065.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (LUXR-FAMILY) [Mycobacterium tuberculosis H37Rv] gi|31619260|emb|CAD97376.1| PROBABLE TRANSCRIPTIONAL REGULATORY PROTEIN (LUXR-FAMILY) [Mycobacterium bovis AF2122/97] gi|148506475|gb|ABQ74284.1| LuxR family transcriptional regulator [Mycobacterium tuberculosis H37Ra] gi|148722212|gb|ABR06837.1| hypothetical transcriptional regulatory protein, luxR-family [Mycobacterium tuberculosis F11] gi|308344853|gb|EFP33704.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu007] gi|308349163|gb|EFP38014.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu008] gi|308353782|gb|EFP42633.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu009] gi|308357727|gb|EFP46578.1| transcriptional regulator, luxR-family [Mycobacterium tuberculosis SUMu010] Length = 1137 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 36/68 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K+ +S LT E L G+G +++EI +L +S TV+++L KL +R+Q Sbjct: 1061 KRPTSGWGALTPTELEVALLVGEGLSNKEIGVRLFISPRTVHSHLTHVYTKLGLSSRLQL 1120 Query: 225 IAKAIRFG 232 +A R G Sbjct: 1121 AQQAARRG 1128 >gi|254228708|ref|ZP_04922131.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262396570|ref|YP_003288423.1| transcriptional regulator VpsT [Vibrio sp. Ex25] gi|151938655|gb|EDN57490.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262340164|gb|ACY53958.1| transcriptional regulator VpsT [Vibrio sp. Ex25] Length = 222 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE + G ++++IAE+L +S +TV +L + K++ NR+QA+ A Sbjct: 157 LTKREKQIITFLSMGASNQQIAEQLFVSENTVKTHLHNIFKKIEVKNRVQALIWA 211 >gi|299531690|ref|ZP_07045095.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] gi|298720406|gb|EFI61358.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] Length = 228 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L+L G T++EI+ L +S TV ++ + K+ R QA+ A+ G Sbjct: 167 SLTEREIDILKLIAQGKTTQEISSYLEISPLTVATHVKNIYGKMQVRTRAQAVRYAMLTG 226 Query: 233 YI 234 I Sbjct: 227 II 228 >gi|302867758|ref|YP_003836395.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302570617|gb|ADL46819.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 222 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L ++ EIA +L LS TV ++ + KL +RIQA+ A G Sbjct: 155 LTAREREVLTLTARALSNAEIAARLHLSTATVKTHVSAILTKLGLRDRIQAVVLAYDTGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|257457681|ref|ZP_05622848.1| sigma-70, region 4 family [Treponema vincentii ATCC 35580] gi|257445067|gb|EEV20143.1| sigma-70, region 4 family [Treponema vincentii ATCC 35580] Length = 247 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 25/35 (71%), Gaps = 1/35 (2%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 R S+ R LTER+ CL+LA +G T ++I EKL +S Sbjct: 180 RVSSLR-LTERQRQCLRLAAEGLTFKQIGEKLCIS 213 >gi|212640627|ref|YP_002317147.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212562107|gb|ACJ35162.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 206 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+ E L+L T+E I+ L +S TV ++ + KL +R+ A+ KAI+ G Sbjct: 143 SLTKMELVILKLIAQDKTNENISHSLNISRRTVEHHVSTIIKKLRVDSRVGAVVKAIKEG 202 Query: 233 YI 234 I Sbjct: 203 II 204 >gi|9297069|sp|O87971|YUKR_YERRU RecName: Full=Transcriptional activator protein yukR gi|3388087|gb|AAC28702.1| response regulator YukR [Yersinia ruckeri] Length = 229 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 27/52 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE L A G T EIA G++ TV ++G+ KL +N QAI Sbjct: 164 LSPRENEVLHWASMGKTYPEIALIAGITTRTVKHHMGNVVKKLGVINARQAI 215 >gi|148252241|ref|YP_001236826.1| two component LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146404414|gb|ABQ32920.1| two component transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 305 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 32/65 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K S+ LT RE+ L G T+ +IA+ LGLS TV+ +L KL NR Sbjct: 233 LPKEFSSEFGLTVRESEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENRTA 292 Query: 224 AIAKA 228 A A A Sbjct: 293 AAAIA 297 >gi|119714221|ref|YP_919363.1| LuxR family transcriptional regulator [Nocardioides sp. JS614] gi|119526130|gb|ABL79500.1| transcriptional regulator, LuxR family [Nocardioides sp. JS614] Length = 545 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 32/57 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L DG ++ EIA++L LS TV ++ S KL +R +A A A R Sbjct: 486 LTRREHDVLTLLADGLSNPEIAQRLYLSRKTVAHHVSSILTKLALRSRAEAAAFATR 542 >gi|152966284|ref|YP_001362068.1| regulatory protein LuxR [Kineococcus radiotolerans SRS30216] gi|151360801|gb|ABS03804.1| regulatory protein LuxR [Kineococcus radiotolerans SRS30216] Length = 955 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 31/50 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT +E QLA +G T++EIA++L LS TV+++L KL +R Q Sbjct: 886 LTAQELQIAQLAAEGLTNKEIADRLYLSHRTVSSHLYRVFPKLGIAHRHQ 935 >gi|331000353|ref|ZP_08324034.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] gi|329572149|gb|EGG53814.1| response regulator receiver domain protein [Parasutterella excrementihominis YIT 11859] Length = 205 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 25/45 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LTERET + L G + EI E+LG+S TV + A KL Sbjct: 144 KELTERETQIVSLLIKGLLNREIGERLGISTRTVEVHRARAFKKL 188 >gi|307324556|ref|ZP_07603763.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889800|gb|EFN20779.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERET L L G ++ EIA +L ++ TV ++ KL +R QA A G Sbjct: 159 DLTERETEVLTLIAQGLSNAEIAARLVVAEQTVKTHVSRILFKLGLRDRTQAAVFAYETG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|239933574|ref|ZP_04690527.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291441947|ref|ZP_06581337.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291344842|gb|EFE71798.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 231 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++EEIAE+L +S T ++ A KL +R Q + A + G Sbjct: 158 LTRRERDVLGLVALGLSNEEIAERLFVSPLTAKTHVNRAMTKLAVRDRAQLVVVAYQCGV 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|256390006|ref|YP_003111570.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Catenulispora acidiphila DSM 44928] gi|256356232|gb|ACU69729.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Catenulispora acidiphila DSM 44928] Length = 179 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG-YTSEEIAEKLGLSVHTVNAYL 209 A + + T+ +EL SA L R+ L L G YT EIAE+LG+SV TV + L Sbjct: 97 SAVWDLDTERVELRTVLHSALAALPHRDRQVLALRYYGSYTDSEIAERLGMSVGTVKSTL 156 Query: 210 GSATVKL 216 A KL Sbjct: 157 WRALRKL 163 >gi|158337425|ref|YP_001518600.1| hypothetical protein AM1_4304 [Acaryochloris marina MBIC11017] gi|158307666|gb|ABW29283.1| conserved hypothetical protein [Acaryochloris marina MBIC11017] Length = 464 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 32/54 (59%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + L+ RE L L G+ +IAE+L +S TV ++ + VKL+A R+QA+ Sbjct: 400 QQLSARERDVLALLVQGFRDRDIAEQLFISDSTVKFHINNILVKLNAKTRLQAL 453 >gi|225155028|ref|ZP_03723524.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224804198|gb|EEG22425.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 217 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE LQL + YT+++IA KL +S TV+ + + KL+ + A+ G Sbjct: 150 SLTDREREILQLVAESYTTKDIATKLDISAKTVDNHRTNLMRKLNLHDVASLTRYAVEIG 209 Query: 233 YI 234 I Sbjct: 210 LI 211 >gi|134102177|ref|YP_001107838.1| protein kinase/LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|291007515|ref|ZP_06565488.1| protein kinase/LuxR family transcriptional regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914800|emb|CAM04913.1| protein kinase/transcriptional regulator, LuxR family [Saccharopolyspora erythraea NRRL 2338] Length = 786 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 7/64 (10%) Query: 167 RSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 R++ AR LT RE +L G T++EIAE L ++ TV ++ + KLD Sbjct: 705 RATTARRDNVHPMPLTRREREIAELVAQGRTNKEIAEGLVIAQRTVEGHVQNILTKLDFT 764 Query: 220 NRIQ 223 +R Q Sbjct: 765 SRAQ 768 >gi|118467880|ref|YP_889220.1| two-component system response regulator [Mycobacterium smegmatis str. MC2 155] gi|118169167|gb|ABK70063.1| two-component system response regulator [Mycobacterium smegmatis str. MC2 155] Length = 214 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 27/51 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 R SA LT RE LQL +G T+ IA L +S+ + ++ S KLD Sbjct: 144 RRSALDQLTPREHDVLQLMAEGKTNSAIASALHISIGSAEKHIASIFTKLD 194 >gi|91782650|ref|YP_557856.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91686604|gb|ABE29804.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 292 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +R+ A L+ R+ ++ G T++ IA LG+S TV +L S +L A NR A Sbjct: 149 PRRTKLANGLSPRQQQIMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAA 208 Query: 225 IA 226 +A Sbjct: 209 VA 210 >gi|329941697|ref|ZP_08290962.1| LuxR family two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329299414|gb|EGG43314.1| LuxR family two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L L G+G T+ +I ++L L+ TV ++ KL RIQA Sbjct: 163 GLTDREREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQA 214 >gi|330821298|ref|YP_004350160.1| PAS/PAC domain protein [Burkholderia gladioli BSR3] gi|327373293|gb|AEA64648.1| PAS/PAC domain protein [Burkholderia gladioli BSR3] Length = 541 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA +LGL+ +TV ++ + KLD +R +AI A G Sbjct: 439 DLTARERDVFDLLCHGLPDKEIANRLGLAPNTVRNHVSTIYNKLDVHSRGEAIVWARERG 498 Query: 233 YI 234 + Sbjct: 499 IV 500 >gi|317506595|ref|ZP_07964387.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316255104|gb|EFV14382.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 218 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 36/70 (51%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ A+ LT RE L+L G + EIAE+L +S TV +++G KL +R AI Sbjct: 147 RQKQASDKLTARELEVLRLIARGANNTEIAERLFISEVTVKSHIGRIFAKLGLRDRAAAI 206 Query: 226 AKAIRFGYIC 235 A G + Sbjct: 207 VYAYDQGVVT 216 >gi|300783203|ref|YP_003763494.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792717|gb|ADJ43092.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 224 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G G ++ +IA K+ + TV A++ + +L A NR+QA A G Sbjct: 155 LTPREREVLTLLGSGLSNADIAAKMFVVEGTVKAHVSTILNRLGAKNRVQAAITAYEAGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|311742103|ref|ZP_07715913.1| transcriptional regulatory protein UhpA [Aeromicrobium marinum DSM 15272] gi|311314596|gb|EFQ84503.1| transcriptional regulatory protein UhpA [Aeromicrobium marinum DSM 15272] Length = 202 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 34/67 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT+RE L+ A G T +IA L LS TV YL +A K + R++A Sbjct: 136 AGGANPLTDREAEVLREALGGATVADIAAHLHLSPGTVRNYLSAAIGKTGSSTRVEAART 195 Query: 228 AIRFGYI 234 A G+I Sbjct: 196 ARSRGWI 202 >gi|218459661|ref|ZP_03499752.1| LuxR family transcriptional regulator [Rhizobium etli Kim 5] Length = 65 Score = 36.6 bits (83), Expect = 3.2, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE + G T+ EI LG+S TVN ++ +A KL +A A+R G Sbjct: 4 VTPRELEIIGWMAAGKTAAEIGAILGISPITVNTHISNAKAKLSVFKETALVAAALRNGI 63 Query: 234 I 234 I Sbjct: 64 I 64 >gi|188591560|ref|YP_001796159.1| RESPONSE REGULATOR, LuxR family, similar to vsrD [Cupriavidus taiwanensis] gi|170938955|emb|CAP63962.1| RESPONSE REGULATOR, LuxR family, similar to vsrD [Cupriavidus taiwanensis LMG 19424] Length = 210 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 30/60 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE LQ G T EIAE L LS T++ + KL N + I AIR G+ Sbjct: 148 LSDREFQVLQRLATGQTVNEIAESLSLSAKTISTHKMRLMQKLGLQNNAELIRYAIRHGF 207 >gi|134100207|ref|YP_001105868.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291006571|ref|ZP_06564544.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133912830|emb|CAM02943.1| putative two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 201 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 28/61 (45%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L LA DG EEIA ++ LS TV +L +A KLDA NR +A A G+ Sbjct: 141 LSPREADVLALARDGAPVEEIARRVSLSRGTVRNHLAAAIAKLDAANRHEAARIAAGHGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|330468817|ref|YP_004406560.1| response regulator receiver protein [Verrucosispora maris AB-18-032] gi|328811788|gb|AEB45960.1| response regulator receiver protein [Verrucosispora maris AB-18-032] Length = 211 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 29/56 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L L T+ +IA + GLS TV ++ + KL +R QAI+ A Sbjct: 151 ELTAREREILTLIAQHLTNPQIAARFGLSTKTVRNHVSNIFAKLQVADRAQAISMA 206 >gi|319650241|ref|ZP_08004387.1| YhcZ protein [Bacillus sp. 2_A_57_CT2] gi|317398072|gb|EFV78764.1| YhcZ protein [Bacillus sp. 2_A_57_CT2] Length = 215 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+ G +++EIA L ++ TV ++ + KL+ +R QA A+R G Sbjct: 152 LTKRELEVLREIAKGKSNKEIASSLYITEKTVKTHVSNLLSKLELADRTQAALYAVRHG 210 >gi|303237683|ref|ZP_07324243.1| transcriptional regulator, LuxR family [Prevotella disiens FB035-09AN] gi|302482135|gb|EFL45170.1| transcriptional regulator, LuxR family [Prevotella disiens FB035-09AN] Length = 251 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L E E L+L+ G+T EIAE++ S+ ++ Y A +L N +AI++A Sbjct: 191 LKEEELEVLRLSAAGFTMNEIAERMYRSLDSIKTYKRHAFERLGVANITEAISRA 245 >gi|302036302|ref|YP_003796624.1| LuxR family response regulator [Candidatus Nitrospira defluvii] gi|300604366|emb|CBK40698.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 216 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ LQL +G ++++IA++L LSV TV + +LD + + AIR G Sbjct: 152 RLTGRQREILQLIAEGCSTKQIAQRLDLSVKTVETHRAQLMERLDIHDVPGLVRLAIRTG 211 Query: 233 YI 234 + Sbjct: 212 LV 213 >gi|261251800|ref|ZP_05944374.1| response regulator VbsA [Vibrio orientalis CIP 102891] gi|260938673|gb|EEX94661.1| response regulator VbsA [Vibrio orientalis CIP 102891] Length = 199 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 17/42 (40%), Positives = 29/42 (69%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + + A L+ RE+S L+L DG+T++EIA ++ +S TV+ Y Sbjct: 133 QGTGAIKLSTRESSVLRLLLDGHTNKEIARRMDISEKTVSTY 174 >gi|260904194|ref|ZP_05912516.1| LuxR family transcriptional regulator [Brevibacterium linens BL2] Length = 855 Score = 36.6 bits (83), Expect = 3.3, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA +LT RE +L G T+ EIA++LG++V TV + KLD +R Q +A+A Sbjct: 789 SAGGSLTGRERQISRLIVAGMTNAEIADELGVAVRTVEGHTYRMYRKLDISSRDQ-VAEA 847 Query: 229 I 229 + Sbjct: 848 L 848 >gi|260174181|ref|ZP_05760593.1| transcriptional regulator [Bacteroides sp. D2] gi|315922447|ref|ZP_07918687.1| transcriptional regulator [Bacteroides sp. D2] gi|313696322|gb|EFS33157.1| transcriptional regulator [Bacteroides sp. D2] Length = 257 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 168 SSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S RN L+ERE L+ G +S+EIA L +SV+TVN + + KL N I+A Sbjct: 190 SEEHRNILSEREKEILRCIRKGLSSKEIATTLYISVNTVNRHRQNILEKLSVGNSIEACR 249 Query: 227 KA 228 A Sbjct: 250 AA 251 >gi|256394338|ref|YP_003115902.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360564|gb|ACU74061.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 31/62 (50%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L L G + EIA L L+ TV ++ + +KL +R QA A+R Sbjct: 154 APALTAREREVLVLIAQGRANREIARALVLAEKTVKTHVSNILMKLGVADRTQAALWAVR 213 Query: 231 FG 232 G Sbjct: 214 HG 215 >gi|226944620|ref|YP_002799693.1| Response regulator, LuxR family [Azotobacter vinelandii DJ] gi|226719547|gb|ACO78718.1| Response regulator, LuxR family [Azotobacter vinelandii DJ] Length = 246 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L GYT+ EIAE+L +SV TV+ Y ++ A + AI G Sbjct: 159 LTPRERDVLLPLVQGYTNREIAEQLEISVKTVDLYRMRVMKRMQAERHADLVGMAIAAGL 218 Query: 234 I 234 + Sbjct: 219 V 219 >gi|218288243|ref|ZP_03492542.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218241602|gb|EED08775.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 224 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/41 (43%), Positives = 24/41 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 S A L+ RET L L GYT+ E+A+ L +SV TV + Sbjct: 144 SRTAERLSPRETEVLVLLAQGYTNREVADALHISVKTVETH 184 >gi|192289851|ref|YP_001990456.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192283600|gb|ACE99980.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 308 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 28/53 (52%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 SA LT RE+ L G T+ +IA+ LGLS TV+ +L KL NR Sbjct: 242 SAEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294 >gi|37675735|ref|NP_936131.1| transcriptional regulator MalT [Vibrio vulnificus YJ016] gi|46576903|sp|Q7MG94|MALT_VIBVY RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|37200274|dbj|BAC96101.1| ATP-dependent transcriptional regulator [Vibrio vulnificus YJ016] Length = 902 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAVTTA 893 >gi|27367626|ref|NP_763153.1| transcriptional regulator MalT [Vibrio vulnificus CMCP6] gi|46577047|sp|Q8D4P3|MALT_VIBVU RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|27359198|gb|AAO08143.1| Transcriptional activator of maltose regulon, MalT [Vibrio vulnificus CMCP6] Length = 902 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAVTTA 893 >gi|317503733|ref|ZP_07961748.1| transcriptional regulator [Prevotella salivae DSM 15606] gi|315665158|gb|EFV04810.1| transcriptional regulator [Prevotella salivae DSM 15606] Length = 251 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L E E L+L+ G+T EIAE++ S+ ++ Y A +L N +AI++A Sbjct: 191 LKEEELEVLRLSAAGFTMNEIAERMYRSLDSIKTYKRHAFERLGVANITEAISRA 245 >gi|317121636|ref|YP_004101639.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591616|gb|ADU50912.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 222 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 AR L++RE L G ++ ++A +L +S TV +L KL +R QA+ A+R Sbjct: 152 ARLLSQRELEVLSRIARGKSTAQVARELYISPKTVRNHLSHIMQKLGVRDRTQAVLFALR 211 Query: 231 FGYI 234 G I Sbjct: 212 VGLI 215 >gi|297538155|ref|YP_003673924.1| two component LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257502|gb|ADI29347.1| two component transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 215 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 7/85 (8%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTERETSCLQ 183 GYV + L N + I A G Y +++ + + + +++ +L++RE + Sbjct: 105 GYVCKQTASSELVNAIRIVAKGKKYISPEVGEILANQVGMETEKAPH-ESLSDREFQTMT 163 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAY 208 L G+T EIAEKL LSV T++ Y Sbjct: 164 LIASGFTVGEIAEKLALSVKTISMY 188 >gi|295095488|emb|CBK84578.1| transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 173 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++RE L+ +G TS EIA L +S +TVN + + K +A N+IQ A G Sbjct: 112 KFSKREREILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKIQIACYAAATG 171 Query: 233 YI 234 I Sbjct: 172 LI 173 >gi|288920723|ref|ZP_06415025.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288347920|gb|EFC82195.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 214 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+ E L L DG + +IA +L LS TV + + KL+A R + I +A G Sbjct: 148 QLTDAEIRVLDLVADGLANGQIAARLSLSEKTVRNRISTILTKLEAATRTEVILRARDAG 207 Query: 233 Y 233 + Sbjct: 208 F 208 >gi|260885201|ref|ZP_05734512.2| transcriptional regulator, LuxR family domain protein [Prevotella tannerae ATCC 51259] gi|260853156|gb|EEX73025.1| transcriptional regulator, LuxR family domain protein [Prevotella tannerae ATCC 51259] Length = 235 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 28/43 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LT RET L+L G ++EIA +LG+S+ TV ++ + T KL Sbjct: 170 LTPRETEVLRLVVSGLLNKEIANRLGVSLTTVISHRKNLTAKL 212 >gi|254703683|ref|ZP_05165511.1| two component transcriptional regulator, LuxR family protein [Brucella suis bv. 3 str. 686] gi|261754322|ref|ZP_05998031.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] gi|261744075|gb|EEY32001.1| two component transcriptional regulator [Brucella suis bv. 3 str. 686] Length = 213 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT ++T L + +G +++IA +LG+S TV A++ + KL +R QA+ R Sbjct: 147 RILTPQQTRVLTMLAEGLLNKQIAFELGVSEATVKAHVSAVLQKLGVDSRTQAVILLSRI 206 Query: 232 G 232 G Sbjct: 207 G 207 >gi|169630793|ref|YP_001704442.1| two-component LuxR family response regulator [Mycobacterium abscessus ATCC 19977] gi|169242760|emb|CAM63788.1| Putative two-component system response regulator, LuxR family [Mycobacterium abscessus] Length = 215 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 8/70 (11%) Query: 160 FLELFKKRSSAAR--------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 L+ F RS+A +LT RE L+L GYT EIAE L +SV TV + + Sbjct: 133 VLDSFTGRSNAPEPALDPELDSLTPRELEVLRLLARGYTYREIAEDLVISVKTVETHASN 192 Query: 212 ATVKLDAVNR 221 K NR Sbjct: 193 VLRKTQQSNR 202 >gi|120403052|ref|YP_952881.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1] gi|119955870|gb|ABM12875.1| metal dependent phosphohydrolase [Mycobacterium vanbaalenii PYR-1] Length = 521 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 6/93 (6%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 +EV +EA V+ + S LT RE L L G +++EIA LG+S Sbjct: 433 DEVAVEA------VLQAAGHRARGHSPRPGGLTPREIEVLCLVARGASNKEIAATLGISG 486 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 T ++ K+ A NRI A A+ G + Sbjct: 487 KTARNHVERTYAKIGATNRIGASMFALNHGLVA 519 >gi|85703125|ref|ZP_01034229.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius sp. 217] gi|85672053|gb|EAQ26910.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius sp. 217] Length = 251 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ R LT R+ L GDG T ++IA +GL+ TV +L A L QA+ K Sbjct: 180 TAPGRALTPRQREVLGWVGDGKTVQDIAIIMGLTSDTVEKHLRLARHALSVETTAQAVLK 239 Query: 228 A 228 A Sbjct: 240 A 240 >gi|316935504|ref|YP_004110486.1| LuxR family two component transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315603218|gb|ADU45753.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris DX-1] Length = 309 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 28/53 (52%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 SA LT RE+ L G T+ +IA+ LGLS TV+ +L KL NR Sbjct: 242 SAEFGLTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294 >gi|288940789|ref|YP_003443029.1| two component LuxR family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288896161|gb|ADC61997.1| two component transcriptional regulator, LuxR family [Allochromatium vinosum DSM 180] Length = 238 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A +LT RE L +G +++ IA +LG+S TV ++ + KLD +R++A Sbjct: 146 SGGAADLTPREQEILCHLAEGQSNKTIARELGISEGTVKLHVKAILRKLDVHSRVEAAVI 205 Query: 228 AIRFG 232 A+ G Sbjct: 206 AVERG 210 >gi|256396913|ref|YP_003118477.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363139|gb|ACU76636.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 227 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G G ++ E+A +L LS TV ++ KL +R QA+ A G Sbjct: 161 LTPREREILALMGRGLSNTELAARLVLSEATVKTHVAHIFTKLSLRDRAQAVVVAYETGL 220 Query: 234 IC 235 + Sbjct: 221 VA 222 >gi|218663810|ref|ZP_03519740.1| hypothetical protein RetlI_33506 [Rhizobium etli IE4771] Length = 253 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE C+ G +S +I LG+S +TV+ ++ + KLD +R A A G Sbjct: 191 LSGRERECIAWVARGKSSSDIGTILGISKNTVDFHIKNVMRKLDTASRTVAAITAATLGI 250 Query: 234 I 234 I Sbjct: 251 I 251 >gi|167902027|ref|ZP_02489232.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] Length = 279 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L +++ S L+ R+ ++ G T++ IA LG+S TV +L S +L A NR Sbjct: 147 QLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNR 206 Query: 222 IQAIA 226 A+A Sbjct: 207 AAAVA 211 >gi|158315290|ref|YP_001507798.1| LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158110695|gb|ABW12892.1| transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 950 Score = 36.2 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 28/50 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE QLAG G + +IA +L +S TV+ +L KL +R++ Sbjct: 886 LTTREQEVAQLAGQGLRTRDIASRLRVSPRTVDTHLSHIYDKLGMSSRVE 935 >gi|83721051|ref|YP_441647.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|167580458|ref|ZP_02373332.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] gi|257139656|ref|ZP_05587918.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83654876|gb|ABC38939.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 279 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L +++ S L+ R+ ++ G T++ IA LG+S TV +L S +L A NR Sbjct: 147 QLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNR 206 Query: 222 IQAIA 226 A+A Sbjct: 207 AAAVA 211 >gi|51894355|ref|YP_077046.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51858044|dbj|BAD42202.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 203 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLA 185 +GYV+ + + L + + G Y T +L ++++ R L+ RE L+L Sbjct: 95 SGYVLKEAADVELFSAIRAVLSGQTYIYPTLAAKLVEEKAGGERKSVPLSPRELEVLRLV 154 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 G+T++EIA +L +SV TV Y KL R + + A+ Sbjct: 155 ALGHTNQEIALQLNVSVRTVETYKTRICEKLGVYTRSEMVRYAL 198 >gi|119776315|ref|YP_929055.1| response regulator receiver protein [Shewanella amazonensis SB2B] gi|119768815|gb|ABM01386.1| two component transcriptional regulator, LuxR family [Shewanella amazonensis SB2B] Length = 191 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L+ERE+ L+L DG T+++I+E L LS+ T+ + S KL N Sbjct: 134 RLSERESQVLRLLTDGLTNKQISETLYLSLRTIEVHRASMMKKLGVHN 181 >gi|326778212|ref|ZP_08237477.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326658545|gb|EGE43391.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 225 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTE+E L L G+G T+ I E+L L+ T+ Y+ S KL R QA A R Sbjct: 162 GLTEQERRILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVARL 220 >gi|315500154|ref|YP_004088957.1| two component transcriptional regulator, luxr family [Asticcacaulis excentricus CB 48] gi|315418166|gb|ADU14806.1| two component transcriptional regulator, LuxR family [Asticcacaulis excentricus CB 48] Length = 239 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +T RE L L G + +E A L +S HTV ++ + KL +R +A+ +A+R Sbjct: 174 APGITPREIELLSLLAKGLSYKEAASVLDISHHTVGTHVKAIYRKLAVNSRSEAVFEAVR 233 Query: 231 FGYI 234 G I Sbjct: 234 SGLI 237 >gi|237732269|ref|ZP_04562750.1| transcriptional regulator RcsB [Citrobacter sp. 30_2] gi|226907808|gb|EEH93726.1| transcriptional regulator RcsB [Citrobacter sp. 30_2] Length = 231 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 149 VSRLLEKISASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 208 Query: 217 DAVNRI 222 N I Sbjct: 209 GVENDI 214 >gi|167918297|ref|ZP_02505388.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] Length = 279 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L +++ S L+ R+ ++ G T++ IA LG+S TV +L S +L A NR Sbjct: 147 QLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNR 206 Query: 222 IQAIA 226 A+A Sbjct: 207 AAAVA 211 >gi|145226775|gb|ABP48141.1| putative two-component system response regulator [Rhodococcus sp. DK17] Length = 215 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+++ + L L G+G T+ +IAE++ L+ TV Y+ KL R QA A + Sbjct: 151 LTDQQRTLLALLGEGLTNRQIAERMFLAEKTVKNYVSRLLTKLGVERRTQAAVLATKM 208 >gi|118468546|ref|YP_885876.1| transcriptional regulatory protein DegU [Mycobacterium smegmatis str. MC2 155] gi|118169833|gb|ABK70729.1| transcriptional regulatory protein DegU [Mycobacterium smegmatis str. MC2 155] Length = 220 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 33/63 (52%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + LT+RE+ L G ++ IA KL + TV +L S KL +R A+A A+ Sbjct: 155 ARQGLTQRESEILSFVVAGLSNRGIANKLVIGEETVKTHLRSIYRKLGVSDRAGAVATAL 214 Query: 230 RFG 232 R G Sbjct: 215 REG 217 >gi|111026426|ref|YP_708709.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110825269|gb|ABH00551.1| protein kinase/ transcriptional regulator, LuxR family [Rhodococcus jostii RHA1] Length = 1082 Score = 36.2 bits (82), Expect = 3.3, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + A NLT+RE +L +G T+ +IA++L +S T ++ KL +R Q A Sbjct: 1016 ADAPTNLTKRERQVAELVAEGLTNRKIADRLVISPRTAQGHVEHVLTKLGFTSRAQIAA 1074 >gi|29831053|ref|NP_825687.1| LuxR-famiry transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29608167|dbj|BAC72222.1| putative LuxR-famiry transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 404 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +T RE S L +G+ +AE+LG+SV T A++ + L A +R Q Sbjct: 297 GITHRERSIAALLAEGHQDAVVAERLGISVRTCRAHIARLSETLGAASRTQ 347 >gi|54025090|ref|YP_119332.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54016598|dbj|BAD57968.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 219 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ G ++ EIA +L LS TV ++G KL +R+QA+ A G Sbjct: 155 LTAREREVLEQIAAGRSNAEIAAELFLSEATVKTHVGRVLTKLGLRDRVQAVVLAYETGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|28899484|ref|NP_799089.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|308094736|ref|ZP_05891637.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|308095423|ref|ZP_05905792.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|308125607|ref|ZP_05776200.2| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] gi|28807720|dbj|BAC60973.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|308087209|gb|EFO36904.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus Peru-466] gi|308093073|gb|EFO42768.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AN-5034] gi|308111203|gb|EFO48743.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus K5030] Length = 214 Score = 36.2 bits (82), Expect = 3.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A +LT RE L+ G ++ ++AE+L +S T+ ++L KL NR+QAIA Sbjct: 148 APATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAW 207 Query: 228 A 228 A Sbjct: 208 A 208 >gi|320157901|ref|YP_004190279.1| transcriptional activator of maltose regulon MalT [Vibrio vulnificus MO6-24/O] gi|319933214|gb|ADV88077.1| transcriptional activator of maltose regulon MalT [Vibrio vulnificus MO6-24/O] Length = 902 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAVTTA 893 >gi|283778999|ref|YP_003369754.1| LuxR family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283437452|gb|ADB15894.1| transcriptional regulator, LuxR family [Pirellula staleyi DSM 6068] Length = 206 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R L++RE L G+ IAEKL +S+ T++ +L A KL I+ A R+ Sbjct: 135 RQLSQRERDVLDWLAYGFEPRSIAEKLDISISTIHTHLKHAREKLALPTLESLISFAARY 194 Query: 232 GY 233 Y Sbjct: 195 CY 196 >gi|256377406|ref|YP_003101066.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921709|gb|ACU37220.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 222 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE + +G + EIA +LG+ V TV A+ G+ KL NR++ Sbjct: 162 GLTERELEVARGIAEGLGNPEIAARLGIGVATVKAHTGNLFGKLGVDNRVR 212 >gi|225350985|ref|ZP_03742008.1| hypothetical protein BIFPSEUDO_02565 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158441|gb|EEG71683.1| hypothetical protein BIFPSEUDO_02565 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 228 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 29/50 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + Sbjct: 168 LSNREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTE 217 >gi|251795413|ref|YP_003010144.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247543039|gb|ACT00058.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 235 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 30/56 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S+ LT RE L+ G +++EIA GLS HTV +L + KL NR+Q Sbjct: 167 SAMTTPLTAREKDILERVVTGESNKEIAVAFGLSEHTVKNHLKNILQKLHLDNRVQ 222 >gi|24374189|ref|NP_718232.1| LuxR family DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24348702|gb|AAN55676.1|AE015706_4 DNA-binding response regulator, LuxR family [Shewanella oneidensis MR-1] Length = 220 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K +S +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA+ Sbjct: 147 KMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAV 206 >gi|126453676|ref|YP_001065612.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134283901|ref|ZP_01770597.1| putative DNA-binding response regulator [Burkholderia pseudomallei 305] gi|167718883|ref|ZP_02402119.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] gi|167737890|ref|ZP_02410664.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167815073|ref|ZP_02446753.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|167823489|ref|ZP_02454960.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167845041|ref|ZP_02470549.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] gi|167893583|ref|ZP_02480985.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167910266|ref|ZP_02497357.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|217419942|ref|ZP_03451448.1| putative DNA-binding response regulator [Burkholderia pseudomallei 576] gi|242316523|ref|ZP_04815539.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254181152|ref|ZP_04887749.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|254190516|ref|ZP_04897023.1| putative DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|254195131|ref|ZP_04901560.1| putative DNA-binding response regulator [Burkholderia pseudomallei S13] gi|254257993|ref|ZP_04949047.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1710a] gi|126227318|gb|ABN90858.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134244690|gb|EBA44788.1| putative DNA-binding response regulator [Burkholderia pseudomallei 305] gi|157938191|gb|EDO93861.1| putative DNA-binding response regulator [Burkholderia pseudomallei Pasteur 52237] gi|169651879|gb|EDS84572.1| putative DNA-binding response regulator [Burkholderia pseudomallei S13] gi|184211690|gb|EDU08733.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1655] gi|217397246|gb|EEC37262.1| putative DNA-binding response regulator [Burkholderia pseudomallei 576] gi|242139762|gb|EES26164.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1106b] gi|254216682|gb|EET06066.1| putative DNA-binding response regulator [Burkholderia pseudomallei 1710a] Length = 279 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L +++ S L+ R+ ++ G T++ IA LG+S TV +L S +L A NR Sbjct: 147 QLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNR 206 Query: 222 IQAIA 226 A+A Sbjct: 207 AAAVA 211 >gi|30022580|ref|NP_834211.1| germination protein gerE [Bacillus cereus ATCC 14579] gi|30264558|ref|NP_846935.1| germination protein GerE [Bacillus anthracis str. Ames] gi|47530023|ref|YP_021372.1| germination protein GerE [Bacillus anthracis str. 'Ames Ancestor'] gi|49187380|ref|YP_030632.1| germination protein GerE [Bacillus anthracis str. Sterne] gi|49481503|ref|YP_038542.1| germination protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141012|ref|YP_085817.1| germination protein [Bacillus cereus E33L] gi|65321856|ref|ZP_00394815.1| COG2771: DNA-binding HTH domain-containing proteins [Bacillus anthracis str. A2012] gi|75760738|ref|ZP_00740760.1| Germination protein gerE [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118479654|ref|YP_896805.1| germination protein [Bacillus thuringiensis str. Al Hakam] gi|163942232|ref|YP_001647116.1| LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|165871523|ref|ZP_02216170.1| germination protein GerE [Bacillus anthracis str. A0488] gi|167635626|ref|ZP_02393938.1| germination protein GerE [Bacillus anthracis str. A0442] gi|167641680|ref|ZP_02399925.1| germination protein GerE [Bacillus anthracis str. A0193] gi|170708363|ref|ZP_02898807.1| germination protein GerE [Bacillus anthracis str. A0389] gi|177653107|ref|ZP_02935394.1| germination protein GerE [Bacillus anthracis str. A0174] gi|190566971|ref|ZP_03019887.1| germination protein GerE [Bacillus anthracis Tsiankovskii-I] gi|196034356|ref|ZP_03101765.1| germination protein GerE [Bacillus cereus W] gi|196039336|ref|ZP_03106642.1| germination protein GerE [Bacillus cereus NVH0597-99] gi|196044720|ref|ZP_03111954.1| germination protein GerE [Bacillus cereus 03BB108] gi|206969521|ref|ZP_03230475.1| germination protein GerE [Bacillus cereus AH1134] gi|206976107|ref|ZP_03237017.1| germination protein GerE [Bacillus cereus H3081.97] gi|217961984|ref|YP_002340554.1| germination protein GerE [Bacillus cereus AH187] gi|218231866|ref|YP_002369296.1| germination protein GerE [Bacillus cereus B4264] gi|218899656|ref|YP_002448067.1| germination protein GerE [Bacillus cereus G9842] gi|225866473|ref|YP_002751851.1| germination protein GerE [Bacillus cereus 03BB102] gi|227817270|ref|YP_002817279.1| germination protein GerE [Bacillus anthracis str. CDC 684] gi|228903018|ref|ZP_04067157.1| Spore germination protein gerE [Bacillus thuringiensis IBL 4222] gi|228910323|ref|ZP_04074139.1| Spore germination protein gerE [Bacillus thuringiensis IBL 200] gi|228917128|ref|ZP_04080686.1| Spore germination protein gerE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228923243|ref|ZP_04086533.1| Spore germination protein gerE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228929537|ref|ZP_04092556.1| Spore germination protein gerE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935809|ref|ZP_04098621.1| Spore germination protein gerE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228941677|ref|ZP_04104224.1| Spore germination protein gerE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228948213|ref|ZP_04110497.1| Spore germination protein gerE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228954769|ref|ZP_04116790.1| Spore germination protein gerE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960765|ref|ZP_04122403.1| Spore germination protein gerE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228967593|ref|ZP_04128616.1| Spore germination protein gerE [Bacillus thuringiensis serovar sotto str. T04001] gi|228974604|ref|ZP_04135170.1| Spore germination protein gerE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981199|ref|ZP_04141499.1| Spore germination protein gerE [Bacillus thuringiensis Bt407] gi|228987740|ref|ZP_04147851.1| Spore germination protein gerE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229013700|ref|ZP_04170829.1| Spore germination protein gerE [Bacillus mycoides DSM 2048] gi|229032144|ref|ZP_04188120.1| Spore germination protein gerE [Bacillus cereus AH1271] gi|229048205|ref|ZP_04193774.1| Spore germination protein gerE [Bacillus cereus AH676] gi|229062182|ref|ZP_04199506.1| Spore germination protein gerE [Bacillus cereus AH603] gi|229072004|ref|ZP_04205214.1| Spore germination protein gerE [Bacillus cereus F65185] gi|229081752|ref|ZP_04214245.1| Spore germination protein gerE [Bacillus cereus Rock4-2] gi|229093586|ref|ZP_04224687.1| Spore germination protein gerE [Bacillus cereus Rock3-42] gi|229098957|ref|ZP_04229892.1| Spore germination protein gerE [Bacillus cereus Rock3-29] gi|229105124|ref|ZP_04235775.1| Spore germination protein gerE [Bacillus cereus Rock3-28] gi|229111961|ref|ZP_04241505.1| Spore germination protein gerE [Bacillus cereus Rock1-15] gi|229117986|ref|ZP_04247346.1| Spore germination protein gerE [Bacillus cereus Rock1-3] gi|229129784|ref|ZP_04258751.1| Spore germination protein gerE [Bacillus cereus BDRD-Cer4] gi|229135330|ref|ZP_04264123.1| Spore germination protein gerE [Bacillus cereus BDRD-ST196] gi|229141231|ref|ZP_04269770.1| Spore germination protein gerE [Bacillus cereus BDRD-ST26] gi|229147058|ref|ZP_04275418.1| Spore germination protein gerE [Bacillus cereus BDRD-ST24] gi|229152693|ref|ZP_04280880.1| Spore germination protein gerE [Bacillus cereus m1550] gi|229158108|ref|ZP_04286177.1| Spore germination protein gerE [Bacillus cereus ATCC 4342] gi|229169225|ref|ZP_04296939.1| Spore germination protein gerE [Bacillus cereus AH621] gi|229180765|ref|ZP_04308103.1| Spore germination protein gerE [Bacillus cereus 172560W] gi|229186733|ref|ZP_04313891.1| Spore germination protein gerE [Bacillus cereus BGSC 6E1] gi|229192698|ref|ZP_04319657.1| Spore germination protein gerE [Bacillus cereus ATCC 10876] gi|229602349|ref|YP_002868773.1| germination protein GerE [Bacillus anthracis str. A0248] gi|254724584|ref|ZP_05186367.1| germination protein GerE [Bacillus anthracis str. A1055] gi|254736592|ref|ZP_05194298.1| germination protein GerE [Bacillus anthracis str. Western North America USA6153] gi|254741630|ref|ZP_05199317.1| germination protein GerE [Bacillus anthracis str. Kruger B] gi|254754772|ref|ZP_05206807.1| germination protein GerE [Bacillus anthracis str. Vollum] gi|254757604|ref|ZP_05209631.1| germination protein GerE [Bacillus anthracis str. Australia 94] gi|296504976|ref|YP_003666676.1| germination protein gerE [Bacillus thuringiensis BMB171] gi|301056000|ref|YP_003794211.1| germination protein [Bacillus anthracis CI] gi|29898138|gb|AAP11412.1| Germination protein gerE [Bacillus cereus ATCC 14579] gi|30259216|gb|AAP28421.1| germination protein GerE [Bacillus anthracis str. Ames] gi|47505171|gb|AAT33847.1| germination protein GerE [Bacillus anthracis str. 'Ames Ancestor'] gi|49181307|gb|AAT56683.1| germination protein GerE [Bacillus anthracis str. Sterne] gi|49333059|gb|AAT63705.1| germination protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974481|gb|AAU16031.1| germination protein [Bacillus cereus E33L] gi|74491766|gb|EAO54960.1| Germination protein gerE [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|118418879|gb|ABK87298.1| germination protein [Bacillus thuringiensis str. Al Hakam] gi|163864429|gb|ABY45488.1| transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] gi|164712820|gb|EDR18350.1| germination protein GerE [Bacillus anthracis str. A0488] gi|167510387|gb|EDR85788.1| germination protein GerE [Bacillus anthracis str. A0193] gi|167529046|gb|EDR91801.1| germination protein GerE [Bacillus anthracis str. A0442] gi|170126738|gb|EDS95621.1| germination protein GerE [Bacillus anthracis str. A0389] gi|172081631|gb|EDT66702.1| germination protein GerE [Bacillus anthracis str. A0174] gi|190561962|gb|EDV15931.1| germination protein GerE [Bacillus anthracis Tsiankovskii-I] gi|195992898|gb|EDX56857.1| germination protein GerE [Bacillus cereus W] gi|196024208|gb|EDX62881.1| germination protein GerE [Bacillus cereus 03BB108] gi|196029963|gb|EDX68564.1| germination protein GerE [Bacillus cereus NVH0597-99] gi|206735209|gb|EDZ52377.1| germination protein GerE [Bacillus cereus AH1134] gi|206745859|gb|EDZ57256.1| germination protein GerE [Bacillus cereus H3081.97] gi|217063730|gb|ACJ77980.1| germination protein GerE [Bacillus cereus AH187] gi|218159823|gb|ACK59815.1| germination protein GerE [Bacillus cereus B4264] gi|218543532|gb|ACK95926.1| germination protein GerE [Bacillus cereus G9842] gi|225786008|gb|ACO26225.1| germination protein GerE [Bacillus cereus 03BB102] gi|227004247|gb|ACP13990.1| germination protein GerE [Bacillus anthracis str. CDC 684] gi|228590788|gb|EEK48648.1| Spore germination protein gerE [Bacillus cereus ATCC 10876] gi|228596746|gb|EEK54408.1| Spore germination protein gerE [Bacillus cereus BGSC 6E1] gi|228602743|gb|EEK60226.1| Spore germination protein gerE [Bacillus cereus 172560W] gi|228614291|gb|EEK71402.1| Spore germination protein gerE [Bacillus cereus AH621] gi|228625337|gb|EEK82095.1| Spore germination protein gerE [Bacillus cereus ATCC 4342] gi|228630756|gb|EEK87398.1| Spore germination protein gerE [Bacillus cereus m1550] gi|228636446|gb|EEK92916.1| Spore germination protein gerE [Bacillus cereus BDRD-ST24] gi|228642272|gb|EEK98564.1| Spore germination protein gerE [Bacillus cereus BDRD-ST26] gi|228648128|gb|EEL04170.1| Spore germination protein gerE [Bacillus cereus BDRD-ST196] gi|228653700|gb|EEL09571.1| Spore germination protein gerE [Bacillus cereus BDRD-Cer4] gi|228665435|gb|EEL20917.1| Spore germination protein gerE [Bacillus cereus Rock1-3] gi|228671525|gb|EEL26825.1| Spore germination protein gerE [Bacillus cereus Rock1-15] gi|228678305|gb|EEL32531.1| Spore germination protein gerE [Bacillus cereus Rock3-28] gi|228684455|gb|EEL38398.1| Spore germination protein gerE [Bacillus cereus Rock3-29] gi|228689795|gb|EEL43601.1| Spore germination protein gerE [Bacillus cereus Rock3-42] gi|228701597|gb|EEL54090.1| Spore germination protein gerE [Bacillus cereus Rock4-2] gi|228711163|gb|EEL63128.1| Spore germination protein gerE [Bacillus cereus F65185] gi|228717165|gb|EEL68841.1| Spore germination protein gerE [Bacillus cereus AH603] gi|228723192|gb|EEL74568.1| Spore germination protein gerE [Bacillus cereus AH676] gi|228729150|gb|EEL80150.1| Spore germination protein gerE [Bacillus cereus AH1271] gi|228747622|gb|EEL97496.1| Spore germination protein gerE [Bacillus mycoides DSM 2048] gi|228772014|gb|EEM20469.1| Spore germination protein gerE [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228778399|gb|EEM26666.1| Spore germination protein gerE [Bacillus thuringiensis Bt407] gi|228785007|gb|EEM33020.1| Spore germination protein gerE [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228792084|gb|EEM39663.1| Spore germination protein gerE [Bacillus thuringiensis serovar sotto str. T04001] gi|228798900|gb|EEM45876.1| Spore germination protein gerE [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804889|gb|EEM51487.1| Spore germination protein gerE [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228811571|gb|EEM57908.1| Spore germination protein gerE [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228817889|gb|EEM63967.1| Spore germination protein gerE [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228823866|gb|EEM69686.1| Spore germination protein gerE [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830116|gb|EEM75734.1| Spore germination protein gerE [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228836449|gb|EEM81800.1| Spore germination protein gerE [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228842546|gb|EEM87636.1| Spore germination protein gerE [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228849275|gb|EEM94113.1| Spore germination protein gerE [Bacillus thuringiensis IBL 200] gi|228856611|gb|EEN01132.1| Spore germination protein gerE [Bacillus thuringiensis IBL 4222] gi|229266757|gb|ACQ48394.1| germination protein GerE [Bacillus anthracis str. A0248] gi|296326028|gb|ADH08956.1| germination protein gerE [Bacillus thuringiensis BMB171] gi|300378169|gb|ADK07073.1| germination protein [Bacillus cereus biovar anthracis str. CI] gi|324328393|gb|ADY23653.1| germination protein [Bacillus thuringiensis serovar finitimus YBT-020] gi|326942284|gb|AEA18180.1| germination protein gerE [Bacillus thuringiensis serovar chinensis CT-43] Length = 74 Score = 36.2 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|323141953|ref|ZP_08076809.1| transcriptional regulator, LuxR family [Phascolarctobacterium sp. YIT 12067] gi|322413567|gb|EFY04430.1| transcriptional regulator, LuxR family [Phascolarctobacterium sp. YIT 12067] Length = 827 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + LTE+E QLA +T+ EIA++L LS T+ YL KL +I A AK R Sbjct: 763 QELTEQELQIAQLAAARHTNREIAQRLSLSEGTIKQYLNKIFAKL----QIDAAAKNKR 817 >gi|108758666|ref|YP_634280.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108462546|gb|ABF87731.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK 1622] Length = 218 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Query: 156 VITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 V+ FL + AA LT R+ LQL +G + IAE+L +SV TV A+ Sbjct: 132 VVEGFLRITDDERPAANPLDRLTSRQREILQLISEGNGTRAIAERLQVSVKTVEAHRTQL 191 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 +L + + A+R+G + Sbjct: 192 MERLAIYDVPSLVRLAVRYGLV 213 >gi|3320465|gb|AAC82661.1| RcsB [Proteus mirabilis] Length = 218 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKVNANGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|83644295|ref|YP_432730.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC 2396] gi|83632338|gb|ABC28305.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 902 Score = 36.2 bits (82), Expect = 3.4, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 33/67 (49%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S L++RET+ L G ++EEIA L ++ TV +L + K R QA+A Sbjct: 836 SPLMEELSQRETTILNHLSAGRSNEEIAVALNIAASTVKTHLRNIYAKFGVRRRTQALAI 895 Query: 228 AIRFGYI 234 A G + Sbjct: 896 AREKGLV 902 >gi|238794186|ref|ZP_04637801.1| Transcriptional activator protein echR [Yersinia intermedia ATCC 29909] gi|238726476|gb|EEQ18015.1| Transcriptional activator protein echR [Yersinia intermedia ATCC 29909] Length = 214 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 28/52 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE L A G T +EIA G++ TV ++G+ KL +N QAI Sbjct: 149 LSPRENEVLHWASMGKTYQEIALITGITSRTVKYHIGNVVKKLGVINAKQAI 200 >gi|324997306|ref|ZP_08118418.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1] Length = 226 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 7/68 (10%) Query: 161 LELFKKRSSAA-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 L+ F R AA LT+RE L+L GY +EIA +L +SV TV ++ S Sbjct: 146 LDAFSDRPGAAPPVDPEVDQLTKRERDVLRLLARGYAYKEIAGELFISVKTVETHVSSVL 205 Query: 214 VKLDAVNR 221 K NR Sbjct: 206 RKTQTSNR 213 >gi|319893351|ref|YP_004150226.1| Two-component response regulator [Staphylococcus pseudintermedius HKU10-03] gi|317163047|gb|ADV06590.1| Two-component response regulator [Staphylococcus pseudintermedius HKU10-03] gi|323463599|gb|ADX75752.1| two-component response regulator NreC [Staphylococcus pseudintermedius ED99] Length = 216 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 34/57 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + A++ Sbjct: 154 LSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTRIMDKLNLKSKPELVEYALK 210 >gi|312878891|ref|ZP_07738691.1| transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] gi|310782182|gb|EFQ22580.1| transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] Length = 448 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 35/58 (60%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +R + A L++RE + +LA +G + +IA +L ++ HTV ++L + KL+ R + Sbjct: 384 RRGNIAEALSDRELAVARLAAEGLRNADIACRLSITEHTVKSHLKAVFSKLEVARRYE 441 >gi|307149920|ref|YP_003890963.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7822] gi|306986720|gb|ADN18598.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 204 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 5/75 (6%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + EL KK ++ +E L GY+ EIAE L +S++T+ Y+ KL+A Sbjct: 134 YYELVKKTF-----ISSQEQKMLHYLSYGYSYTEIAEALDISLNTLKNYMTDLREKLNAK 188 Query: 220 NRIQAIAKAIRFGYI 234 ++ + A+R G + Sbjct: 189 DKTHLVVIALRTGLV 203 >gi|284043113|ref|YP_003393453.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947334|gb|ADB50078.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 227 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 28/49 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+ GY +E+A +LG+S TV A++ + KL NR Sbjct: 160 QLTQREREVLRHIARGYLYKEVALRLGISAKTVEAHVSAVLRKLQLSNR 208 >gi|295680795|ref|YP_003609369.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440690|gb|ADG19858.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 210 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE LQL G + +IAE LS T++ + KL N + I AIR G Sbjct: 148 LTDREFQVLQLIASGQSINDIAEACSLSAKTISTHKMRLMQKLGLSNNAEVIRYAIRHGL 207 Query: 234 I 234 I Sbjct: 208 I 208 >gi|225181500|ref|ZP_03734942.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225167748|gb|EEG76557.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 212 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 36/71 (50%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F + ++ NLT +E L + G ++EIAE + +S TV Y+ + KL+ Sbjct: 137 FDNIKSQQPKKEHNLTPKEVQILDMISVGKANKEIAEIMKISDKTVRNYVSNILQKLNVS 196 Query: 220 NRIQAIAKAIR 230 NR +A + +R Sbjct: 197 NRTEAASYWMR 207 >gi|206577298|ref|YP_002237366.1| capsular synthesis regulator component B [Klebsiella pneumoniae 342] gi|288934294|ref|YP_003438353.1| LuxR family transcriptional regulator [Klebsiella variicola At-22] gi|290508497|ref|ZP_06547868.1| two-component system, NarL family, capsular synthesis response regulator RcsB [Klebsiella sp. 1_1_55] gi|206566356|gb|ACI08132.1| capsular synthesis regulator component B [Klebsiella pneumoniae 342] gi|288889023|gb|ADC57341.1| two component transcriptional regulator, LuxR family [Klebsiella variicola At-22] gi|289777891|gb|EFD85888.1| two-component system, NarL family, capsular synthesis response regulator RcsB [Klebsiella sp. 1_1_55] Length = 216 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|153839891|ref|ZP_01992558.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ3810] gi|260902461|ref|ZP_05910856.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ4037] gi|149746588|gb|EDM57576.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ3810] gi|308109572|gb|EFO47112.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus AQ4037] gi|328471379|gb|EGF42274.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 200 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 35/61 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A +LT RE L+ G ++ ++AE+L +S T+ ++L KL NR+QAIA Sbjct: 134 APATVDLTIRELQVLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAW 193 Query: 228 A 228 A Sbjct: 194 A 194 >gi|77458474|ref|YP_347979.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382477|gb|ABA73990.1| putative transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf0-1] Length = 239 Score = 36.2 bits (82), Expect = 3.4, Method: Compositional matrix adjust. Identities = 26/64 (40%), Positives = 29/64 (45%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ RE L G +IA LGLS TV +L SA L QAI AIR Sbjct: 174 AGKLSTREREVLAWVAAGRRQADIAATLGLSGRTVENHLRSARRHLGVATTAQAIKIAIR 233 Query: 231 FGYI 234 G I Sbjct: 234 KGEI 237 >gi|330821614|ref|YP_004350476.1| LuxR family transcriptional regulator [Burkholderia gladioli BSR3] gi|327373609|gb|AEA64964.1| LuxR family transcriptional regulator [Burkholderia gladioli BSR3] Length = 509 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +EIA KL LS +TV ++ + KLD +R +AI A G Sbjct: 431 DLTGREREVFDLLCRGLADKEIAIKLNLSPNTVRNHVATIYGKLDVHSRTEAIVWARERG 490 Query: 233 Y 233 + Sbjct: 491 F 491 >gi|324326299|gb|ADY21559.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 216 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/68 (29%), Positives = 37/68 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K++ + LT+RE L+ G +++EIA L ++ TV ++ + KL+ +R QA Sbjct: 142 KEKENPFSMLTKREQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNILAKLEVDDRTQA 201 Query: 225 IAKAIRFG 232 A++ G Sbjct: 202 ALYAVKHG 209 >gi|320333658|ref|YP_004170369.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754947|gb|ADV66704.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 200 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L A G ++ IA LGL TV YL A KL NR+ A A G+ Sbjct: 140 LTDRERQVLAQAEGGASTAGIARTLGLREGTVRNYLSEAIGKLGVDNRVAAARLARERGW 199 Query: 234 I 234 + Sbjct: 200 L 200 >gi|313675451|ref|YP_004053447.1| two component transcriptional regulator, luxr family [Marivirga tractuosa DSM 4126] gi|312942149|gb|ADR21339.1| two component transcriptional regulator, LuxR family [Marivirga tractuosa DSM 4126] Length = 213 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 8/68 (11%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 DFL+ +K L+ RE +QL G T++EIA+K+ LSV T+ + + KL+ Sbjct: 147 DFLKKYK--------LSRREIEIIQLLKKGLTNQEIADKIFLSVLTIQTHRKNIIQKLEV 198 Query: 219 VNRIQAIA 226 N IA Sbjct: 199 NNSAGLIA 206 >gi|299147852|ref|ZP_07040915.1| transcriptional regulator [Bacteroides sp. 3_1_23] gi|298514035|gb|EFI37921.1| transcriptional regulator [Bacteroides sp. 3_1_23] Length = 259 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 168 SSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S RN L+ERE L+ G +S+EIA L +SV+TVN + + KL N I+A Sbjct: 190 SEEHRNILSEREKEILRCIRKGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACR 249 Query: 227 KA 228 A Sbjct: 250 AA 251 >gi|298247251|ref|ZP_06971056.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549910|gb|EFH83776.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ EIA L +S TV ++ KL A NR QAI KA + G Sbjct: 159 GLTTRELEVLRLVTLGQSNTEIAAALFVSDATVKTHINHIFSKLGARNRSQAIIKARQLG 218 Query: 233 Y 233 Sbjct: 219 L 219 >gi|197285589|ref|YP_002151461.1| transcriptional regulator RcsB [Proteus mirabilis HI4320] gi|227356089|ref|ZP_03840479.1| two component system, response regulator (capsular synthesis regulator component B) [Proteus mirabilis ATCC 29906] gi|194683076|emb|CAR43597.1| two component system, response regulator (capsular synthesis regulator component B) [Proteus mirabilis HI4320] gi|227163734|gb|EEI48646.1| two component system, response regulator (capsular synthesis regulator component B) [Proteus mirabilis ATCC 29906] Length = 218 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKVNANGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|170676297|ref|YP_001742058.1| phage-related DNA-binding protein [Salmonella phage E1] gi|170321607|emb|CAM33126.1| phage-related DNA-binding protein [Salmonella phage Vi II-E1] Length = 270 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Query: 164 FKKRSSAARNLT--ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 F SS + L ER + +L G G+T+EEIA+K+G SV V +L V + R Sbjct: 112 FMVSSSQGKQLDPFERAKAYTRLKGFGWTNEEIAKKVGRSVSDVQMHLSLGDVPAEVKAR 171 Query: 222 IQA 224 I A Sbjct: 172 ISA 174 >gi|311747217|ref|ZP_07721002.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1] gi|126578929|gb|EAZ83093.1| DNA-binding response regulator, LuxR family [Algoriphagus sp. PR1] Length = 254 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 16/37 (43%), Positives = 24/37 (64%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 R L+ +E L++ +G S+ IAEKL LS HT+N + Sbjct: 192 RMLSSKEIKILKMISEGMLSKHIAEKLNLSFHTINTH 228 >gi|152971176|ref|YP_001336285.1| transcriptional regulator RcsB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895765|ref|YP_002920501.1| transcriptional regulator RcsB [Klebsiella pneumoniae NTUH-K2044] gi|262043280|ref|ZP_06016411.1| LuxR family DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330000605|ref|ZP_08303749.1| Capsular synthesis regulator component B [Klebsiella sp. MS 92-3] gi|24459260|gb|AAL25250.1| regulator of capsule synthesis B [Klebsiella pneumoniae] gi|150956025|gb|ABR78055.1| positive response regulator for colanic capsule biosynthesis, (sensor, RcsC) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548083|dbj|BAH64434.1| DNA-binding response regulator in two-component regulatory system with RcsC [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039379|gb|EEW40519.1| LuxR family DNA-binding response regulator [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537958|gb|EGF64136.1| Capsular synthesis regulator component B [Klebsiella sp. MS 92-3] Length = 216 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|77460195|ref|YP_349702.1| two component LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77384198|gb|ABA75711.1| putative LuxR family response regulator [Pseudomonas fluorescens Pf0-1] Length = 208 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 7/70 (10%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LELFK ++ +RE LQL G T++EIA+ + LS TV+ Y KL A + Sbjct: 142 LELFK-------SVNDRELMVLQLFAQGRTNKEIAKGMFLSNKTVSTYKKRLMQKLKAKS 194 Query: 221 RIQAIAKAIR 230 ++ I A R Sbjct: 195 LVELIEMAKR 204 >gi|17232470|ref|NP_489018.1| transcriptional regulator [Nostoc sp. PCC 7120] gi|17134116|dbj|BAB76677.1| transcriptional regulator [Nostoc sp. PCC 7120] Length = 224 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +SS+ LT RE +L G T+ EIAEKL ++ ++V L KL R + +A Sbjct: 156 KSSSPSPLTPRELQIAELVAQGLTNAEIAEKLWITQNSVKQALKRMFRKLGVSARAEMVA 215 Query: 227 K 227 + Sbjct: 216 R 216 >gi|300934165|ref|ZP_07149421.1| putative transcription regulator [Corynebacterium resistens DSM 45100] Length = 240 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 27/48 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE L+L GYT E+AE+L +SV TV ++ + K NR Sbjct: 183 LTRREKEVLRLLARGYTYREMAERLFISVKTVETHVSNILRKTQQSNR 230 >gi|302559481|ref|ZP_07311823.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] gi|302477099|gb|EFL40192.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] Length = 221 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 13/109 (11%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR----------NLT 175 +G+++ + LA V + A G V + F K S A R +LT Sbjct: 100 SGFLLKDASARRLAEGVRVVASGEALLAPTVTRRLITEFSKLSEAPRLMPAAHAAYGDLT 159 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ERET L L G ++ EIA +L ++ T+ ++ VKL +R QA Sbjct: 160 ERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQA 208 >gi|255642661|gb|ACU21562.1| AhyR/asaR [Aeromonas hydrophila] Length = 88 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + A +G +IA+ LG++ TV +L + KL A ++ QAI+ A++ G Sbjct: 12 LSLRELEVCRWAAEGKQVSDIAQILGITPRTVTFHLNNVVSKLGASSKSQAISWALKQGM 71 Query: 234 I 234 + Sbjct: 72 V 72 >gi|269124386|ref|YP_003297756.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309344|gb|ACY95718.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 222 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 9/114 (7%) Query: 130 GYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR--NLTERETS 180 G+++ +E L V + A G ++I +F K + R LTERE Sbjct: 102 GFLVKDTEPQELIRAVRVAARGDALISPSVTRRLIAEFTGRVKAPAPDPRLNALTERERE 161 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++L G +++EIA +L LS T ++ KL +R Q + A G + Sbjct: 162 VMRLVAAGLSNDEIAGRLVLSPATAKTHVSRIMSKLGVRDRSQLVVLAYESGMV 215 >gi|189912937|ref|YP_001964826.1| Receiver component of a two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|189913262|ref|YP_001964491.1| Putative response regulatory protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|167777613|gb|ABZ95913.1| Receiver component of a two-component response regulator [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781330|gb|ABZ99627.1| Putative response regulatory protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 218 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 34/67 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K + L+ RE L+L +G + ++IA+ G ++ TV + + KL R+Q + Sbjct: 150 KNQTGLEILSPRERQILELIIEGDSPQQIAQLFGTTIGTVRQQIKTIYKKLQVNTRVQML 209 Query: 226 AKAIRFG 232 KA FG Sbjct: 210 KKARLFG 216 >gi|86739638|ref|YP_480038.1| LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86566500|gb|ABD10309.1| transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 297 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ-AIA 226 S A L+ RE ++L +G ++ ++AE L +S+ TV +L A V NR Q AIA Sbjct: 223 SVAGKLSARERDVVRLVAEGRSNRQVAEALCISIDTVKHHLTHALVATGCTNRTQLAIA 281 >gi|89098909|ref|ZP_01171789.1| germination protein [Bacillus sp. NRRL B-14911] gi|89086313|gb|EAR65434.1| germination protein [Bacillus sp. NRRL B-14911] Length = 74 Score = 36.2 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|300934384|ref|ZP_07149640.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Corynebacterium resistens DSM 45100] Length = 241 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 48/178 (26%), Positives = 75/178 (42%), Gaps = 26/178 (14%) Query: 63 DIPNILIETYGDD--FLFHFNSGLLPIIWQSIQEETVIES-----SGQ--LSVRLEGGLL 113 D+P I++ + D L +G + + ++ E ++ S +GQ LS + L+ Sbjct: 79 DVPVIMLTAFDTDSFILRSLEAGAVGFLLKTTAPEALVRSIKAAAAGQQLLSAEVLAKLV 138 Query: 114 PFAGIAFPVRLGFHKNGYVI-FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 AG A RLG + +G + F S ++ + A T LE Sbjct: 139 GMAGNAEE-RLGENGDGEAVRFGSTLPDSGSDAV-----ASEAFPTTHLE---------- 182 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ RE L G + EIAEKL +S+ TV ++ KL A NR+Q IR Sbjct: 183 ALSPREKEIALLIAQGLGNAEIAEKLFISMPTVKTHVARILEKLQASNRVQIAIAVIR 240 >gi|260769711|ref|ZP_05878644.1| transcriptional activator of maltose regulon MalT [Vibrio furnissii CIP 102972] gi|260615049|gb|EEX40235.1| transcriptional activator of maltose regulon MalT [Vibrio furnissii CIP 102972] gi|315182293|gb|ADT89206.1| malT regulatory protein [Vibrio furnissii NCTC 11218] Length = 881 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +AI A Sbjct: 818 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAIRTA 872 >gi|258652221|ref|YP_003201377.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555446|gb|ACV78388.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 219 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 27/51 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTE+E L L G G T+ +I E++ L+ TV Y+ S KL R Q Sbjct: 149 GLTEQERVVLDLIGQGMTNRQIGERMFLAEKTVKNYVSSVLAKLGMQRRTQ 199 >gi|160914272|ref|ZP_02076493.1| hypothetical protein EUBDOL_00282 [Eubacterium dolichum DSM 3991] gi|158433899|gb|EDP12188.1| hypothetical protein EUBDOL_00282 [Eubacterium dolichum DSM 3991] Length = 64 Score = 36.2 bits (82), Expect = 3.5, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +T+RE+ +L Y+++EIA+++ +S TV ++ + +KL R QA+ Sbjct: 1 MTQRESEVFKLLIANYSTKEIAQRMNISDKTVRNHISNVMLKLGVKGRAQAV 52 >gi|238754417|ref|ZP_04615773.1| Transcriptional activator protein esaR [Yersinia ruckeri ATCC 29473] gi|10444019|gb|AAG17669.1|AF274748_1 response regulator YruR [Yersinia ruckeri] gi|238707450|gb|EEP99811.1| Transcriptional activator protein esaR [Yersinia ruckeri ATCC 29473] Length = 247 Score = 36.2 bits (82), Expect = 3.5, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 27/52 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE L A G T EIA G++ TV ++G+ KL +N QAI Sbjct: 182 LSPRENEVLHWASMGKTYPEIALIAGITTRTVKHHMGNVVKKLGVINARQAI 233 >gi|313675285|ref|YP_004053281.1| two component transcriptional regulator, luxr family [Marivirga tractuosa DSM 4126] gi|312941983|gb|ADR21173.1| two component transcriptional regulator, LuxR family [Marivirga tractuosa DSM 4126] Length = 215 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + I DF+ KK+ S +++RE L+L D +++EIA+KL +S+ TV A+ Sbjct: 134 KAIMDFMSK-KKQDSDVVAISKREKEVLRLIIDELSNQEIADKLFISIRTVEAH 186 >gi|289642055|ref|ZP_06474208.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289508128|gb|EFD29074.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 259 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LT+R+ L+L DG ++ EIA +L ++ TV ++L + +LD +R Q Sbjct: 192 HLTQRQREVLELVADGLSNAEIAARLFVTEATVKSHLTAVLRRLDLRDRTQ 242 >gi|126440864|ref|YP_001058373.1| putative DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126220357|gb|ABN83863.1| putative DNA-binding response regulator [Burkholderia pseudomallei 668] Length = 279 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L +++ S L+ R+ ++ G T++ IA LG+S TV +L S +L A NR Sbjct: 147 QLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNR 206 Query: 222 IQAIA 226 A+A Sbjct: 207 AAAVA 211 >gi|53726081|ref|YP_103403.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|121601196|ref|YP_992504.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124385129|ref|YP_001026695.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126450323|ref|YP_001080022.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|167000332|ref|ZP_02266150.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|254175606|ref|ZP_04882266.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254202076|ref|ZP_04908439.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254207407|ref|ZP_04913757.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254359829|ref|ZP_04976099.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|52429504|gb|AAU50097.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|121230006|gb|ABM52524.1| DNA-binding response regulator [Burkholderia mallei SAVP1] gi|124293149|gb|ABN02418.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|126243193|gb|ABO06286.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|147746323|gb|EDK53400.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|147751301|gb|EDK58368.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|148029069|gb|EDK86974.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|160696650|gb|EDP86620.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|243063667|gb|EES45853.1| DNA-binding response regulator [Burkholderia mallei PRL-20] Length = 279 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L +++ S L+ R+ ++ G T++ IA LG+S TV +L S +L A NR Sbjct: 147 QLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNR 206 Query: 222 IQAIA 226 A+A Sbjct: 207 AAAVA 211 >gi|330874861|gb|EGH09010.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 222 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 159 DFLELFKKR-SSAARNLTERETS-CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 F E F +R L+ERET CL L G+T+ E AE+L L V+TV +Y A +KL Sbjct: 141 SFEERFHERLRETGLTLSERETQVCLGLLA-GHTAIEQAERLALKVNTVGSYQRRAAIKL 199 Query: 217 DAVNR 221 R Sbjct: 200 GISGR 204 >gi|330999781|ref|ZP_08323486.1| putative transcriptional regulatory protein FixJ [Parasutterella excrementihominis YIT 11859] gi|329573784|gb|EGG55373.1| putative transcriptional regulatory protein FixJ [Parasutterella excrementihominis YIT 11859] Length = 203 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT+RE + L G G ++ IA+ L +S TV + G A KL+ +N ++ IA +R Sbjct: 142 SLTDREKDVVILVGKGMMNKTIADTLKISEKTVQQHRGVACKKLNLINAVE-IADFLR 198 >gi|326775119|ref|ZP_08234384.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326655452|gb|EGE40298.1| transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 80 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 NL+ R+ L L G+ +EIA+ LG+SV TV+++L + +R +AK Sbjct: 2 NLSTRQIEILSLIAKGHRDKEIAKHLGMSVRTVDSHLQRLYDRYGVRSRAAIVAK 56 >gi|312199753|ref|YP_004019814.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231089|gb|ADP83944.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 246 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +RE L L T+ EIA++L +S TV ++G KL +R+Q +A A G I Sbjct: 176 DREHDVLLLVAQARTNREIADELHVSEATVKVHVGRILAKLGLRDRVQTVAFAYETGLIT 235 >gi|260777855|ref|ZP_05886748.1| transcriptional regulatory protein UhpA [Vibrio coralliilyticus ATCC BAA-450] gi|260605868|gb|EEX32153.1| transcriptional regulatory protein UhpA [Vibrio coralliilyticus ATCC BAA-450] Length = 203 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 2/96 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGD 187 GY+ L V + G CY L+L KK +++ LT+RE +L Sbjct: 97 GYLTKRCSPEELVQAVRTASTGGCYLTPEIALKLASPKKSTASLSQLTKREKQVCELLAT 156 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 G + +A +LGLS TV+ + +A KL N ++ Sbjct: 157 GMDVKLVASQLGLSHKTVHVHRANAMDKLAVKNNVE 192 >gi|198275681|ref|ZP_03208212.1| hypothetical protein BACPLE_01853 [Bacteroides plebeius DSM 17135] gi|198271310|gb|EDY95580.1| hypothetical protein BACPLE_01853 [Bacteroides plebeius DSM 17135] Length = 202 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 35/60 (58%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I+ + + ++ S +L++RE + G T++EIAEKL +SVHTV + + T KL Sbjct: 116 ISLLMNVANEKESDQDSLSQREKEIVGCVVRGMTNKEIAEKLYISVHTVITHRRNITRKL 175 >gi|167564011|ref|ZP_02356927.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167571156|ref|ZP_02364030.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 238 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE CL+ G +S EIA LG+S + V ++ K D +R A+ KA+ G Sbjct: 178 LTHRELECLKWIAAGKSSWEIAMILGISENGVLYHVKKLMAKFDVQSRHLAVLKAMASGV 237 Query: 234 I 234 + Sbjct: 238 V 238 >gi|317499014|ref|ZP_07957295.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316893664|gb|EFV15865.1| response regulator receiver domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 222 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +TE E ++L G G +++EI+ +L LS TV YL + KLD +R Q Sbjct: 157 ITEAEWEIIKLVGRGLSNKEISAELSLSEGTVRNYLSTILNKLDLRDRTQ 206 >gi|315185840|gb|EFU19605.1| transcriptional regulator, LuxR family [Spirochaeta thermophila DSM 6578] Length = 709 Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + T RE L L GY+ +EIA++LG+S +TV +L S ++ NR Sbjct: 621 HFTPREKEVLLLYIQGYSRKEIAKRLGISENTVKVHLSSIYNEVGVSNR 669 >gi|288962862|ref|YP_003453156.1| two-component response regulator [Azospirillum sp. B510] gi|288915128|dbj|BAI76612.1| two-component response regulator [Azospirillum sp. B510] Length = 227 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 18/53 (33%), Positives = 29/53 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT R+ L L G +++EI E+LGL++ TV ++ L +R QA+ Sbjct: 163 GLTRRQLEVLDLLAQGLSNQEIGERLGLNLSTVKTHVTGVLKALGVGSRTQAV 215 >gi|288917708|ref|ZP_06412071.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288350923|gb|EFC85137.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 243 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 167 RSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R A R LT+RE L G ++ EIA +L L+ TV ++G KL+ +R+QA Sbjct: 163 RDGADRLARLTDRERDVLGEVAAGLSNAEIATRLVLAEGTVKTHVGRILGKLELRDRVQA 222 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 223 VVFAYEIGLV 232 >gi|302535350|ref|ZP_07287692.1| two-component system response regulator [Streptomyces sp. C] gi|302444245|gb|EFL16061.1| two-component system response regulator [Streptomyces sp. C] Length = 219 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 31/56 (55%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 S LTERET L L G ++ EIA++L ++ T+ ++ VKL +R QA Sbjct: 151 SGVSELTERETEVLVLIAQGLSNGEIADRLLVAESTIKTHVSRILVKLGLRDRTQA 206 >gi|256389895|ref|YP_003111459.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356121|gb|ACU69618.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 234 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G G ++ E+A + LS TV ++ KL+ +R QA+ A G Sbjct: 168 TLTPREREVLGLLGRGLSNAELAARFHLSEATVKTHVARILAKLNLRDRAQAVVVAYETG 227 Query: 233 YI 234 I Sbjct: 228 LI 229 >gi|229821847|ref|YP_002883373.1| LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567760|gb|ACQ81611.1| transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 872 Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 31/60 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R++ A LT R+ L L G TS EIA+ L LS TV+ ++ L +R A+A Sbjct: 793 RATTALGLTPRQHEILGLVARGLTSPEIADCLYLSRRTVDNHVADVLAALGVPSRRDAVA 852 >gi|149911017|ref|ZP_01899646.1| regulatory protein CsgD [Moritella sp. PE36] gi|149805920|gb|EDM65906.1| regulatory protein CsgD [Moritella sp. PE36] Length = 230 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+ G ++ EIA+ L +S HT+ ++L + K+ NR+QA++ A Sbjct: 171 LTTREQEILRQLMTGSSNLEIADALYVSEHTIKSHLYNVFKKIKVKNRLQAVSWA 225 >gi|27382418|ref|NP_773947.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27355589|dbj|BAC52572.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 225 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/46 (41%), Positives = 28/46 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 R LT RE ++L +GY+++ I+ L LSV T A+ +A KLD Sbjct: 161 RGLTPREQLVVKLVAEGYSNKGISAILNLSVKTTEAHRAAAMRKLD 206 >gi|312139507|ref|YP_004006843.1| luxr family transcriptional regulator [Rhodococcus equi 103S] gi|311888846|emb|CBH48158.1| putative LuxR family transcriptional regulator [Rhodococcus equi 103S] Length = 867 Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%) Query: 168 SSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + AAR L T+RE L G G ++++IA +L LSV TV ++ A KL A++ + Sbjct: 803 AKAARPLPLTDREREVAVLVGRGLSNKDIARRLVLSVRTVEGHIYRACEKL-ALSHRSDL 861 Query: 226 AKAIR 230 AK +R Sbjct: 862 AKLVR 866 >gi|297202549|ref|ZP_06919946.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297148137|gb|EFH28852.1| LuxR-family transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 910 Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 2/68 (2%) Query: 167 RSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 RS R+L T RE L+L G T+ +IAE+L +S T + ++ + KL R +A Sbjct: 830 RSDPLRSLGLTGRERDVLRLVTLGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEA 889 Query: 225 IAKAIRFG 232 A A R G Sbjct: 890 AAVAHRLG 897 >gi|325672603|ref|ZP_08152299.1| transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325556480|gb|EGD26146.1| transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 867 Score = 36.2 bits (82), Expect = 3.6, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 3/65 (4%) Query: 168 SSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + AAR L T+RE L G G ++++IA +L LSV TV ++ A KL A++ + Sbjct: 803 AKAARPLPLTDREREVAVLVGRGLSNKDIARRLVLSVRTVEGHIYRACEKL-ALSHRSDL 861 Query: 226 AKAIR 230 AK +R Sbjct: 862 AKLVR 866 >gi|187926917|ref|YP_001893262.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|241665246|ref|YP_002983605.1| LuxR family transcriptional regulator [Ralstonia pickettii 12D] gi|187728671|gb|ACD29835.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|240867273|gb|ACS64933.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] Length = 211 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L++RE L++ G G T EIAE L +S TV+ Y G K+ N Sbjct: 150 LSDREFQTLRMLGSGRTLSEIAEALQISAKTVSVYRGRVLSKMKLRN 196 >gi|73542427|ref|YP_296947.1| LuxR response regulator receiver [Ralstonia eutropha JMP134] gi|72119840|gb|AAZ62103.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia eutropha JMP134] Length = 219 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT R+ S L L +G ++ IA +LGL+ +TV ++ + +L R+Q +++ Sbjct: 152 TPAELGLTPRQGSVLALVLEGLPNKVIARRLGLTENTVKEHVSAILQRLGVRTRMQVMSR 211 Query: 228 AIRF 231 RF Sbjct: 212 MERF 215 >gi|91976037|ref|YP_568696.1| response regulator receiver [Rhodopseudomonas palustris BisB5] gi|91682493|gb|ABE38795.1| response regulator receiver [Rhodopseudomonas palustris BisB5] Length = 221 Score = 36.2 bits (82), Expect = 3.6, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 155 QVITDFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 QVI+ + ++R++ A L+ RE ++L G T++EIA + +S TV Y+ Sbjct: 133 QVISALRDATIRRRAAMAVKLSIREEQIVRLLLKGKTNKEIAHAISISEKTVKHYMTILM 192 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL NR++ + A R Sbjct: 193 QKLQVRNRLEVVIAAQRL 210 >gi|315126223|ref|YP_004068226.1| response regulator [Pseudoalteromonas sp. SM9913] gi|315014737|gb|ADT68075.1| response regulator [Pseudoalteromonas sp. SM9913] Length = 216 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 35/63 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ERE + + G +++IAE+L LS TVN+Y KL+ ++ AIR+ Sbjct: 148 QSLSERELQIMLMITKGEKAQDIAERLNLSSKTVNSYRYRMFEKLNVGGDVELTHLAIRY 207 Query: 232 GYI 234 I Sbjct: 208 KMI 210 >gi|271498689|ref|YP_003331714.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586] gi|270342244|gb|ACZ75009.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586] Length = 250 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 7/94 (7%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGL 200 ++I AH ++ + + E+ K R+++ ++RE L A G T +EIA LG+ Sbjct: 150 LLISAHE---KLTSLYREMSKNRNNSKSQEPNLFSQRENEILYWASMGKTYQEIALILGI 206 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + TV ++G+ KL +N AI + I Sbjct: 207 TTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240 >gi|183599605|ref|ZP_02961098.1| hypothetical protein PROSTU_03090 [Providencia stuartii ATCC 25827] gi|188021855|gb|EDU59895.1| hypothetical protein PROSTU_03090 [Providencia stuartii ATCC 25827] Length = 216 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSKLLEKVNASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|163842188|ref|YP_001626593.1| two component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162955664|gb|ABY25179.1| two component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 225 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE+ L L G ++EIA++ +SV TV ++ + KL +R QAI Sbjct: 165 LTERESEILALIAAGRNNQEIAQESFVSVATVKTHINNIFAKLQLRDRAQAI 216 >gi|327313477|ref|YP_004328914.1| LuxR family transcriptional regulator [Prevotella denticola F0289] gi|326945945|gb|AEA21830.1| transcriptional regulator, LuxR family [Prevotella denticola F0289] Length = 214 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+ ET L+ G T+ EIAEK S HTVN + + KL N +A+ A+R G Sbjct: 146 KLTKTETEILKEIALGLTTREIAEKRFSSFHTVNTHRKNIFRKLGVNNVHEAMRYAMRSG 205 Query: 233 YI 234 + Sbjct: 206 LV 207 >gi|319949743|ref|ZP_08023770.1| two component transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] gi|319436589|gb|EFV91682.1| two component transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] Length = 226 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 27/49 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +LT RE L+L GYT EIAE+L +SV TV + + K NR Sbjct: 165 SLTPREKEVLRLLARGYTYREIAEELFISVKTVETHASNVLRKTQQSNR 213 >gi|256785041|ref|ZP_05523472.1| regulatory protein [Streptomyces lividans TK24] gi|289768934|ref|ZP_06528312.1| LuxR-family transcriptional regulator [Streptomyces lividans TK24] gi|289699133|gb|EFD66562.1| LuxR-family transcriptional regulator [Streptomyces lividans TK24] Length = 166 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 32/59 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L DG T+ +IAE+L +S T + ++ + KL R +A A A R Sbjct: 94 GLTGRERDVLRLVSDGRTNRQIAEELFISPKTASVHVSNILAKLGVSGRGEAAAVAHRL 152 >gi|255693676|ref|ZP_05417351.1| transcriptional regulator [Bacteroides finegoldii DSM 17565] gi|260620493|gb|EEX43364.1| transcriptional regulator [Bacteroides finegoldii DSM 17565] Length = 259 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 168 SSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S RN L+ERE L+ G +S+EIA L +SV+TVN + + KL N I+A Sbjct: 190 SEEHRNILSEREKEILRCIRKGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACR 249 Query: 227 KA 228 A Sbjct: 250 AA 251 >gi|218660891|ref|ZP_03516821.1| LuxR family transcriptional regulator [Rhizobium etli IE4771] Length = 65 Score = 36.2 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE + G T+ EI LG+S TVN ++ +A KL +A A+R G Sbjct: 4 VTPREREIIGCMAAGKTAAEIGAILGISPITVNTHISNAKAKLGVFKETALVAAALRNGI 63 Query: 234 I 234 I Sbjct: 64 I 64 >gi|120612238|ref|YP_971916.1| two component LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590702|gb|ABM34142.1| two component transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] Length = 240 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT R+ L L +G ++ IA L LS HTV +L + KL NR++ I++ Sbjct: 177 GLTPRQGQILALVLEGLPNKPIANALHLSEHTVKEHLTAILQKLGVSNRVELISR 231 >gi|156740233|ref|YP_001430362.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231561|gb|ABU56344.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 227 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE LQL +G + EIA +L +S +T ++ + KL NR++A Sbjct: 153 ELTSRELEILQLIAEGLGNREIAARLDISYNTAMKHVSNILAKLKVSNRMEA 204 >gi|145594340|ref|YP_001158637.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303677|gb|ABP54259.1| response regulator receiver [Salinispora tropica CNB-440] Length = 230 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 12/115 (10%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGA-----CYQVITDFLELFKKRSSAA---RNLTERET 179 KNG T E L+ A V+ G +VI F + ++ A +LT RE Sbjct: 116 KNG----TPEALVAAIRVVARGEGLIAPELTRRVIAAFARPGGEPTTTAVALSDLTPREH 171 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ EIA L L TV ++ KL +R+QA+ A G + Sbjct: 172 EVLVLVASGASNAEIAANLRLGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGVV 226 >gi|226944315|ref|YP_002799388.1| LuxR family transcriptional regulator [Azotobacter vinelandii DJ] gi|226719242|gb|ACO78413.1| Transcriptional regulator, LuxR family [Azotobacter vinelandii DJ] Length = 188 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 35/76 (46%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 ++++ E + AA NLT RE +G T +EI KLG+S TV + Sbjct: 110 FRLMVWHFERIDRPIRAAVNLTPREREISAHIVNGLTCKEIGRKLGISHRTVEVHRARLM 169 Query: 214 VKLDAVNRIQAIAKAI 229 KL A N ++K I Sbjct: 170 KKLAAKNSADLVSKII 185 >gi|328474716|gb|EGF45521.1| response regulator [Vibrio parahaemolyticus 10329] Length = 214 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ERE + + G +I+E+L LS TVN+Y KLD ++ AIR Sbjct: 147 KDLSERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGEVELTHLAIRH 206 Query: 232 GYI 234 G + Sbjct: 207 GML 209 >gi|311742180|ref|ZP_07715990.1| LuxR-family transcriptional regulator [Aeromicrobium marinum DSM 15272] gi|311314673|gb|EFQ84580.1| LuxR-family transcriptional regulator [Aeromicrobium marinum DSM 15272] Length = 899 Score = 36.2 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE+ L+ G ++ +IA LG+S TV+ ++ + KL +R +A +A R Sbjct: 838 HLTPRESEVLRWVSTGASNRQIARTLGISEGTVSVHVSNLLRKLGVGSRTEAAVRAAR 895 >gi|312200390|ref|YP_004020451.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231726|gb|ADP84581.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 912 Score = 36.2 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +S LT +E +LA +G +++EI E+L LS TV ++L KLD +R Q Sbjct: 849 ASPVSVLTAQEMQIARLAAEGLSNKEIGERLYLSPRTVGSHLYRLFPKLDITSRNQ 904 >gi|256392814|ref|YP_003114378.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359040|gb|ACU72537.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 525 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 35/69 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R + LT RE L+L G ++ EIAE+L +S TV+ ++ K NR A Sbjct: 454 RRPAWPGGLTRREVQVLRLLARGLSNGEIAEQLVISRKTVSHHVEHIYAKTGTANRAMAG 513 Query: 226 AKAIRFGYI 234 A+R G + Sbjct: 514 LYAVRHGLM 522 >gi|87199644|ref|YP_496901.1| two component LuxR family transcriptional regulator [Novosphingobium aromaticivorans DSM 12444] gi|87135325|gb|ABD26067.1| two component transcriptional regulator, LuxR family [Novosphingobium aromaticivorans DSM 12444] Length = 244 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 10/114 (8%) Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAAR-------NLTERE 178 +GY++ + LM + +I + FL E ++R+ AR L+ERE Sbjct: 106 DGYIVKEIGCQSLMESLRLIALGEKVMPSALAQFLPETMERRTRPARPGPDLAGTLSERE 165 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + G ++ IA+ LG++ TV ++ + KL NR QA+A A+ G Sbjct: 166 IETFRRMCRGEPNKVIAQNLGITEATVKVHVKAILRKLHLKNRTQAVAWALGEG 219 >gi|72161162|ref|YP_288819.1| regulatory protein LuxR [Thermobifida fusca YX] gi|71914894|gb|AAZ54796.1| regulatory protein, LuxR [Thermobifida fusca YX] Length = 827 Score = 36.2 bits (82), Expect = 3.7, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 31/56 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 R LT RE +LAG G ++ EIA +L +S TV ++ + KL+ R + A+ Sbjct: 749 RTLTPRERQIARLAGSGLSNREIAARLVISQATVARHIANIFAKLNISKRAELPAR 804 >gi|238788984|ref|ZP_04632774.1| HTH-type transcriptional regulator malT [Yersinia frederiksenii ATCC 33641] gi|238723011|gb|EEQ14661.1| HTH-type transcriptional regulator malT [Yersinia frederiksenii ATCC 33641] Length = 903 Score = 36.2 bits (82), Expect = 3.7, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF-- 231 LT+RE L L GY++++IA +L ++ T+ ++ + KL +R +A+ +A R Sbjct: 839 LTQREWQVLGLIYSGYSNDQIAGELEVAATTIKTHIRNLYQKLGVAHRQEAVQQAQRLLQ 898 Query: 232 --GYI 234 GYI Sbjct: 899 MMGYI 903 >gi|329924857|ref|ZP_08279807.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328940393|gb|EGG36719.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 223 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L K R R LTERE +L G + EIA+ L ++ T Y+ + KL+ V+R Sbjct: 155 LRKNRLDRIR-LTEREEELARLMVQGLNNREIADMLHIAEGTARNYISNLYSKLEVVDRA 213 Query: 223 QAIAK 227 QAI + Sbjct: 214 QAIVR 218 >gi|307717986|ref|YP_003873518.1| transcriptional regulator protein [Spirochaeta thermophila DSM 6192] gi|306531711|gb|ADN01245.1| putative transcriptional regulator protein [Spirochaeta thermophila DSM 6192] Length = 709 Score = 36.2 bits (82), Expect = 3.8, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + T RE L L GY+ +EIA++LG+S +TV +L S ++ NR Sbjct: 621 HFTPREKEVLLLYIQGYSRKEIAKRLGISENTVKVHLSSIYNEVGVSNR 669 >gi|302542030|ref|ZP_07294372.1| two-component system, regulatory protein [Streptomyces hygroscopicus ATCC 53653] gi|302459648|gb|EFL22741.1| two-component system, regulatory protein [Streptomyces himastatinicus ATCC 53653] Length = 229 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 14/111 (12%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC-------------- 181 E L V+ G QV LE +R + R+ ERET+ Sbjct: 105 DEILRAVEGVMSGDAGLSPQVQRRLLEWLAERGGSDRDEPERETAAGPLPDGLTPREAEV 164 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L G ++ EIA +L ++ TV ++ + K +R QA+ A R G Sbjct: 165 LALVAGGLSNPEIARRLMIAPATVKTHINNLFAKTAVRDRAQAVRYAYRHG 215 >gi|239981448|ref|ZP_04703972.1| two-component system response regulator [Streptomyces albus J1074] gi|291453299|ref|ZP_06592689.1| two-component system response regulator [Streptomyces albus J1074] gi|291356248|gb|EFE83150.1| two-component system response regulator [Streptomyces albus J1074] Length = 137 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 27/50 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE L A G + EIA L LS TV Y+ SAT K+ A NR+ Sbjct: 88 LSPREVRVLSRAAQGDSVAEIARGLCLSHGTVRNYIASATRKVGARNRVD 137 >gi|284030612|ref|YP_003380543.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809905|gb|ADB31744.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 227 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R LT+RE L L G T+ EIA +L + TV ++ +KL +R+QA+ Sbjct: 152 RPDLVAELTDREREVLGLIARGLTNTEIAGQLFVGEATVKTHVSRVLLKLGLRDRVQAVV 211 Query: 227 KAIRFGYIC 235 F Y C Sbjct: 212 ----FAYEC 216 >gi|42780178|ref|NP_977425.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42736096|gb|AAS40033.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC 10987] Length = 214 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 34/57 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 NLTE+E L+ G +++IA +G++ TV AYL + KL +R +A+A +I Sbjct: 151 NLTEKELFVLKAIARGNKNKDIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSI 207 >gi|148264823|ref|YP_001231529.1| two component LuxR family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146398323|gb|ABQ26956.1| two component transcriptional regulator, LuxR family [Geobacter uraniireducens Rf4] Length = 214 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L +GY ++EIA LG+S+ + + + KL + Q A+R G Sbjct: 151 LTKREREVLKLTAEGYNTKEIAFTLGVSIKMIEIHRMNIRKKLGLKSIAQLATYAVRIGL 210 Query: 234 I 234 I Sbjct: 211 I 211 >gi|331014227|gb|EGH94283.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 222 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 159 DFLELFKKR-SSAARNLTERETS-CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 F E F +R L+ERET CL L G+T+ E AE+L L V+TV +Y A +KL Sbjct: 141 SFEERFHERLRETGLTLSERETQVCLGLLA-GHTAIEQAERLALKVNTVGSYQRRAAIKL 199 Query: 217 DAVNR 221 R Sbjct: 200 GISGR 204 >gi|327537688|gb|EGF24399.1| two component transcriptional regulator, LuxR family [Rhodopirellula baltica WH47] Length = 210 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 24/35 (68%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 L++RE +L GDG T+ IA+KL LS HT++ + Sbjct: 148 LSDREKEIFRLIGDGLTTGAIADKLFLSTHTIDTH 182 >gi|331698378|ref|YP_004334617.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953067|gb|AEA26764.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 212 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 34/69 (49%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ L+ RE LQL G T+ E A +L +S T+ +L KL+ +R A++ Sbjct: 143 RTPTEEALSSRELEVLQLVAAGATNREAARRLFISEATIKTHLLHIYAKLEVRDRASAVS 202 Query: 227 KAIRFGYIC 235 A R G + Sbjct: 203 AAYRRGLLT 211 >gi|291455021|ref|ZP_06594411.1| two component system response regulator [Streptomyces albus J1074] gi|291357970|gb|EFE84872.1| two component system response regulator [Streptomyces albus J1074] Length = 297 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L G T+++I+ +L LS TV ++ KLD NR+ A+ A G Sbjct: 155 LTPREMQVFRLVSQGLTNQQISNRLVLSEATVKSHFNRICHKLDLRNRVDAVILAYETG 213 >gi|223042639|ref|ZP_03612688.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Staphylococcus capitis SK14] gi|222444302|gb|EEE50398.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Staphylococcus capitis SK14] Length = 218 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + Sbjct: 150 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMNKLNLKSKPELVEY 209 Query: 228 AIR 230 A++ Sbjct: 210 ALK 212 >gi|159037739|ref|YP_001536992.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916574|gb|ABV98001.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 240 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 34/64 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + A NLT RE L L G +++EIA +L +SV TV +L KL +R Q + A Sbjct: 153 AVANNLTGREREILLLTARGLSADEIAGRLFISVATVRTHLYRLRCKLQLKDRAQLVTFA 212 Query: 229 IRFG 232 + G Sbjct: 213 YQTG 216 >gi|119717828|ref|YP_924793.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119538489|gb|ABL83106.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 229 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LTERE ++L GY +E+A++L +S+ TV ++ S KL +R Sbjct: 168 RLTEREREVMRLIARGYAYKEVAKELFISIKTVETHMSSVLRKLQLSSR 216 >gi|94314084|ref|YP_587293.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93357936|gb|ABF12024.1| two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 231 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L DG + EIAE+L LS +TV ++ KL +R +AI A G Sbjct: 169 RLSPREHQILRLVADGLGNREIAERLFLSRYTVECHIKHIYRKLAVSSRTRAINAARSRG 228 Query: 233 YI 234 + Sbjct: 229 LL 230 >gi|309775442|ref|ZP_07670445.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] gi|308916831|gb|EFP62568.1| DNA-binding response regulator [Erysipelotrichaceae bacterium 3_1_53] Length = 209 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 3/72 (4%) Query: 155 QVITDFLELFKK---RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++I +L K+ + +L ERE +QL G ++E+A+ L LS TV YL S Sbjct: 125 EIIAKLPDLLKQGVADETGCYDLNERELHFIQLVAKGLNNKELAQTLFLSEGTVRNYLSS 184 Query: 212 ATVKLDAVNRIQ 223 KL +R Q Sbjct: 185 LLEKLQLRDRTQ 196 >gi|310659584|ref|YP_003937305.1| hypothetical protein CLOST_2283 [Clostridium sticklandii DSM 519] gi|308826362|emb|CBH22400.1| protein of unknown function [Clostridium sticklandii] Length = 568 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 11/102 (10%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 ++ Y I +++L + N+ +E + + Q ++ E F +LT RE LA Sbjct: 475 RDRYPIHLAKYLEIKNQ-FLEGYNSLRQ---EYGETF------PSDLTAREKEVAILASK 524 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 G + EI+EKL +S +TV +L S KLD V+R +A+ + Sbjct: 525 GLRNTEISEKLMISENTVKYHLRSIFQKLD-VDRRNKLAEKL 565 >gi|291286657|ref|YP_003503473.1| two component transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] gi|290883817|gb|ADD67517.1| two component transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] Length = 212 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 9/107 (8%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTERETSC 181 +GY++ + + + N V + G +VI+ F + K ++ LT+RE Sbjct: 102 SGYILKGTPAIQITNSVRLLHDGGSPMTPSIARKVISFFQD--KPFNNDENRLTKREVEV 159 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+L G+T E++ +L +S +TV+ ++ KL A + A+ KA Sbjct: 160 LKLLDQGFTYNEVSAELDISRNTVHTHIKKIYEKLQASGKEDALRKA 206 >gi|171778727|ref|ZP_02919823.1| hypothetical protein STRINF_00675 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282684|gb|EDT48108.1| hypothetical protein STRINF_00675 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 198 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 EL + S L+ +E LQL G ++++IA+ L LS TV Y S KL A NR Sbjct: 126 ELMESMISQDNPLSPQEKRILQLISLGKSNQDIADTLYLSNGTVRNYTSSIFNKLSANNR 185 Query: 222 IQAIAKAIRFGYI 234 ++A A G++ Sbjct: 186 VEAARIAKDKGWL 198 >gi|163747813|ref|ZP_02155152.1| putative GerE family transcriptional regulator [Oceanibulbus indolifex HEL-45] gi|161378921|gb|EDQ03351.1| putative GerE family transcriptional regulator [Oceanibulbus indolifex HEL-45] Length = 186 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 27/55 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A LT RE L +G ++ IA LGLS HTV ++ KL NR +A Sbjct: 117 AKDELTNREMQVLTCVAEGKQNKVIANSLGLSEHTVKLHIHHVISKLGVNNRTEA 171 >gi|126650450|ref|ZP_01722673.1| two-component response regulator [Bacillus sp. B14905] gi|126592606|gb|EAZ86605.1| two-component response regulator [Bacillus sp. B14905] Length = 206 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 159 DFLE-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 DFL+ FK +S+ +L E+E L+L +G+T++ IA +L + T YL L+ Sbjct: 130 DFLDDKFKLQSAKDIHLNEKEKKILRLIAEGHTNKAIAIELNIPQRTTERYLTQLFSLLN 189 Query: 218 AVNRIQAIAKAIRFGYI 234 +R +A+ A R + Sbjct: 190 VDSRTEAVNLAERMNLL 206 >gi|28870018|ref|NP_792637.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28853264|gb|AAO56332.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|330963629|gb|EGH63889.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 222 Score = 36.2 bits (82), Expect = 3.8, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 159 DFLELFKKR-SSAARNLTERETS-CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 F E F +R L+ERET CL L G+T+ E AE+L L V+TV +Y A +KL Sbjct: 141 SFEERFHERLRETGLTLSERETQVCLGLLA-GHTAIEQAERLALKVNTVGSYQRRAAIKL 199 Query: 217 DAVNR 221 R Sbjct: 200 GISGR 204 >gi|302129744|ref|ZP_07255734.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 222 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 159 DFLELFKKR-SSAARNLTERETS-CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 F E F +R L+ERET CL L G+T+ E AE+L L V+TV +Y A +KL Sbjct: 141 SFEERFHERLRETGLTLSERETQVCLGLLA-GHTAIEQAERLALKVNTVGSYQRRAAIKL 199 Query: 217 DAVNR 221 R Sbjct: 200 GISGR 204 >gi|261254003|ref|ZP_05946576.1| DNA-binding HTH domain-containing protein [Vibrio orientalis CIP 102891] gi|260937394|gb|EEX93383.1| DNA-binding HTH domain-containing protein [Vibrio orientalis CIP 102891] Length = 215 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 33/61 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A +LT RE L+ G ++ +IAE + +S TV ++L KL NR+QA A Sbjct: 149 SPATVDLTTREIQILRCLMVGSSNIQIAEDMFISEFTVKSHLQKIFKKLSVKNRVQAAAW 208 Query: 228 A 228 A Sbjct: 209 A 209 >gi|229589258|ref|YP_002871377.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229361124|emb|CAY47987.1| putative two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 208 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 28/75 (37%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 V T LELFK + +RE LQL G T++EIA+ + LS TV+ Y K Sbjct: 137 VETQELELFK-------TVNDRELMVLQLFAQGRTNKEIAKGMFLSNKTVSTYKKRLMQK 189 Query: 216 LDAVNRIQAIAKAIR 230 L A + ++ I A R Sbjct: 190 LQAKSLVELIEMAKR 204 >gi|224825367|ref|ZP_03698472.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] gi|224602288|gb|EEG08466.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] Length = 217 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 8/74 (10%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 T+ LE+ ++ S ++ RE L++ DG +S+EIA + LS TV A+ + KL Sbjct: 136 TETLEVMQRLS----RISGREREVLEMVADGLSSKEIARAMELSPRTVEAHRANLFSKLG 191 Query: 218 AVNRIQAIAKAIRF 231 + ++A IRF Sbjct: 192 ----VDSLADLIRF 201 >gi|187779968|ref|ZP_02996441.1| hypothetical protein CLOSPO_03564 [Clostridium sporogenes ATCC 15579] gi|187773593|gb|EDU37395.1| hypothetical protein CLOSPO_03564 [Clostridium sporogenes ATCC 15579] Length = 217 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 20/115 (17%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--------VITDFL-------ELFKKRS 168 L F +GY++ S +NE+I E AC + V + + EL Sbjct: 96 LKFGASGYLLKDS-----SNELIYEGIKACVKGNVVVHPDVANNIILNTTYEKELNDDDI 150 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S NLT RE + ++ +G +++EIAE++ LS T+ + + KLD +R Q Sbjct: 151 SLKYNLTGREINIIREIANGLSNKEIAERIYLSEGTIKNNISTILSKLDLRDRTQ 205 >gi|167618566|ref|ZP_02387197.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] Length = 279 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L +++ S L+ R+ ++ G T++ IA LG+S TV +L S +L A NR Sbjct: 147 QLPRRKRSPRSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNR 206 Query: 222 IQAIA 226 A+A Sbjct: 207 AAAVA 211 >gi|118472166|ref|YP_889490.1| DevR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118173453|gb|ABK74349.1| two component transcriptional regulatory protein devr [Mycobacterium smegmatis str. MC2 155] Length = 211 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +RS LT++E L L G+G T+++IA ++ L+ TV Y+ KL R QA Sbjct: 142 ERSDPLSGLTQQERVLLDLLGEGLTNKQIAARMFLAEKTVKNYVSRLLAKLGMERRTQA 200 >gi|53713956|ref|YP_099948.1| transcriptional regulator [Bacteroides fragilis YCH46] gi|60682160|ref|YP_212304.1| putative DNA-binding response regulator [Bacteroides fragilis NCTC 9343] gi|253567050|ref|ZP_04844501.1| transcriptional regulator [Bacteroides sp. 3_2_5] gi|265764304|ref|ZP_06092872.1| transcriptional regulator [Bacteroides sp. 2_1_16] gi|52216821|dbj|BAD49414.1| transcriptional regulator [Bacteroides fragilis YCH46] gi|60493594|emb|CAH08383.1| putative DNA-binding response regulator [Bacteroides fragilis NCTC 9343] gi|251944174|gb|EES84683.1| transcriptional regulator [Bacteroides sp. 3_2_5] gi|263256912|gb|EEZ28258.1| transcriptional regulator [Bacteroides sp. 2_1_16] gi|301163639|emb|CBW23192.1| putative DNA-binding response regulator [Bacteroides fragilis 638R] Length = 202 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 28/44 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 NL++RE + G T++EIAEKL LS+HTV + + + KL Sbjct: 133 NLSQREKEIVICVVKGMTNKEIAEKLFLSIHTVITHRRNISKKL 176 >gi|311031417|ref|ZP_07709507.1| germination protein [Bacillus sp. m3-13] Length = 64 Score = 36.2 bits (82), Expect = 3.9, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 2 LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 60 >gi|302538500|ref|ZP_07290842.1| LOW QUALITY PROTEIN: two component system response regulator [Streptomyces sp. C] gi|302447395|gb|EFL19211.1| LOW QUALITY PROTEIN: two component system response regulator [Streptomyces sp. C] Length = 210 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L G G+++ ++A +LGL+ TV A++ S +L NR A Sbjct: 159 LTGREREVLGYLGSGFSNGQVARRLGLAEGTVKAHVSSILARLGVDNRAAA 209 >gi|261867913|ref|YP_003255835.1| transcriptional regulator MalT [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413245|gb|ACX82616.1| HTH-type transcriptional regulator MalT [Aggregatibacter actinomycetemcomitans D11S-1] Length = 896 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 33/53 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE L L GY++E+I+++L ++ T+ ++ + K+ NR +AI+ Sbjct: 832 LTQREWQVLGLIYSGYSNEQISDELQVATTTIKTHIRNLYQKIGVANRSEAIS 884 >gi|240080653|ref|ZP_04725196.1| NarL/NarP [Neisseria gonorrhoeae FA19] gi|240123586|ref|ZP_04736542.1| NarL/NarP [Neisseria gonorrhoeae PID332] gi|268596776|ref|ZP_06130943.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268682215|ref|ZP_06149077.1| two-component system response regulator [Neisseria gonorrhoeae PID332] gi|268550564|gb|EEZ45583.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268622499|gb|EEZ54899.1| two-component system response regulator [Neisseria gonorrhoeae PID332] Length = 218 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R+ A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA Sbjct: 145 QRTQALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAA 204 Query: 226 AKAIR 230 AIR Sbjct: 205 VYAIR 209 >gi|219871193|ref|YP_002475568.1| ATP-dependent transcriptional regulator [Haemophilus parasuis SH0165] gi|219691397|gb|ACL32620.1| ATP-dependent transcriptional regulator [Haemophilus parasuis SH0165] Length = 905 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L L GY++E+I+++L +++ T+ ++ + K+ NR +AI Sbjct: 841 LTQREWQVLGLIYSGYSNEQISQELVVAMTTIKTHIRNLYQKIGVANRAEAI 892 >gi|163790348|ref|ZP_02184780.1| DNA-binding response regulator, LuxR family protein [Carnobacterium sp. AT7] gi|159874419|gb|EDP68491.1| DNA-binding response regulator, LuxR family protein [Carnobacterium sp. AT7] Length = 210 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LT RE L L G +++EIA+ L +++ TV ++ + KL+ +R QA Sbjct: 148 DLTNREQEILMLISQGNSNQEIADALFITLKTVKTHVSNILAKLEVEDRTQA 199 >gi|154486803|ref|ZP_02028210.1| hypothetical protein BIFADO_00630 [Bifidobacterium adolescentis L2-32] gi|154084666|gb|EDN83711.1| hypothetical protein BIFADO_00630 [Bifidobacterium adolescentis L2-32] Length = 245 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 12/95 (12%) Query: 130 GYVIFTSE---FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY +F+ + F++ A + A+GA I D EL + L+ RE ++L Sbjct: 147 GYAVFSPKLAGFVLSAFQNGPSANGAFGGPIHDD-ELDR--------LSNREQEVMRLIA 197 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 GYT +E+A +L +S+ TV ++ S KL NR Sbjct: 198 RGYTYKEVASELFISIKTVETHMSSVLRKLQLSNR 232 >gi|111221107|ref|YP_711901.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111148639|emb|CAJ60313.1| Putative two-component system response regulator [Frankia alni ACN14a] Length = 340 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L++ G T+ +IA L +S TV +++ KL A NR +A+A+ + Sbjct: 274 GLTPREREVLRILAGGATNAQIAAALTVSETTVKSHVKHILRKLRATNRSEAVARYLHLA 333 Query: 233 YIC 235 I Sbjct: 334 RIA 336 >gi|20095023|ref|NP_614870.1| transcription regulator [Methanopyrus kandleri AV19] gi|19888290|gb|AAM02800.1| Predicted transcriptional regulator containing DNA-binding HTH domain [Methanopyrus kandleri AV19] Length = 176 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LTER+ + + +G + EIAE+LG++V V +L A +K+ N Q IA+ I Sbjct: 33 GLTERQATVSVMRSEGMSYREIAEELGITVSGVRNHLEQARMKMKVDNDFQ-IARII 88 >gi|21222080|ref|NP_627859.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|289770726|ref|ZP_06530104.1| regulatory protein [Streptomyces lividans TK24] gi|7801285|emb|CAB91157.1| putative regulatory protein [Streptomyces coelicolor A3(2)] gi|289700925|gb|EFD68354.1| regulatory protein [Streptomyces lividans TK24] Length = 394 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ RE S L +G+ IAE+LG+SV T A++ + L A +R Q Sbjct: 312 GISHREQSIAALLAEGHQDAVIAERLGISVRTARAHIARLSETLGAASRTQ 362 >gi|318079614|ref|ZP_07986946.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 108 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +L ERE G G ++ EIA +L LSV TV A++ KL NR+Q Sbjct: 39 SLAEREREVALAVGRGASNAEIAAELYLSVPTVKAHVSRVLAKLHLNNRVQ 89 >gi|296130130|ref|YP_003637380.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296021945|gb|ADG75181.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 208 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +LT E L L G+G ++ EIAE+LG++ TV ++ S K+ R Q A Sbjct: 139 SLTPSELRVLDLIGEGMSNREIAERLGVAEKTVKNHITSLLAKMGLQRRTQVAA 192 >gi|293390221|ref|ZP_06634555.1| HTH-type transcriptional regulator MalT [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950755|gb|EFE00874.1| HTH-type transcriptional regulator MalT [Aggregatibacter actinomycetemcomitans D7S-1] Length = 904 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 33/53 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE L L GY++E+I+++L ++ T+ ++ + K+ NR +AI+ Sbjct: 840 LTQREWQVLGLIYSGYSNEQISDELQVATTTIKTHIRNLYQKIGVANRSEAIS 892 >gi|288927298|ref|ZP_06421145.1| transcriptional regulator [Prevotella sp. oral taxon 317 str. F0108] gi|288330132|gb|EFC68716.1| transcriptional regulator [Prevotella sp. oral taxon 317 str. F0108] Length = 210 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+ E L+ G T++EIAEK S HTVN + + KL+ N +A A+R G Sbjct: 142 KLTKTEMEVLRDIALGLTTKEIAEKRFSSFHTVNTHRKNIFRKLNVNNVHEATKYALRAG 201 Query: 233 YI 234 + Sbjct: 202 MV 203 >gi|226310881|ref|YP_002770775.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] gi|226093829|dbj|BAH42271.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] Length = 602 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 32/69 (46%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ A LT+RE LQ+ G + IA KL LS TV Y + KL NR A+ Sbjct: 534 EKDENAYGLTKREQEILQMLAQGMRYKTIASKLYLSDGTVRNYASALYDKLGVRNRDDAV 593 Query: 226 AKAIRFGYI 234 K G + Sbjct: 594 QKGKMEGLV 602 >gi|226195323|ref|ZP_03790912.1| putative DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] gi|254298568|ref|ZP_04966020.1| putative DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|157808332|gb|EDO85502.1| putative DNA-binding response regulator [Burkholderia pseudomallei 406e] gi|225932525|gb|EEH28523.1| putative DNA-binding response regulator [Burkholderia pseudomallei Pakistan 9] Length = 275 Score = 36.2 bits (82), Expect = 3.9, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L +++ S L+ R+ ++ G T++ IA LG+S TV +L S +L A NR Sbjct: 143 QLPRRKRSPCSLLSPRQAQIMRFVHMGSTNKMIARTLGISEGTVKIHLASIFQQLGATNR 202 Query: 222 IQAIA 226 A+A Sbjct: 203 AAAVA 207 >gi|314934456|ref|ZP_07841815.1| DNA-binding response regulator, LuxR family [Staphylococcus caprae C87] gi|313652386|gb|EFS16149.1| DNA-binding response regulator, LuxR family [Staphylococcus caprae C87] Length = 220 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 36/63 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + L++RE L L GY +++IAEKL +SV TV A+ KL+ ++ + + Sbjct: 152 SDPFKILSKRELEILPLIAKGYGNKDIAEKLFVSVKTVEAHKTHIMNKLNLKSKPELVEY 211 Query: 228 AIR 230 A++ Sbjct: 212 ALK 214 >gi|311894358|dbj|BAJ26766.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 226 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L L G+G T+ +I E++ L+ TV ++ KL R+QA Sbjct: 156 QLTDREREILALIGEGLTNRQIGERVYLAEKTVKNHISRLLAKLGVERRVQA 207 >gi|284045808|ref|YP_003396148.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950029|gb|ADB52773.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 302 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 31/55 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+L G T+ EIA L +S TV ++ + KL+A NR A+A+ Sbjct: 242 ELTARELQVLELLATGRTNAEIATALMISEGTVKHHVKNLLRKLNASNRADAVAR 296 >gi|282857278|ref|ZP_06266517.1| DNA-binding response regulator, LuxR family [Pyramidobacter piscolens W5455] gi|282584883|gb|EFB90212.1| DNA-binding response regulator, LuxR family [Pyramidobacter piscolens W5455] Length = 216 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 12/115 (10%) Query: 130 GYVI--FTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR-NLTERET 179 GYV+ +S+ L LA + + A+G Y +I D+L L + + L+ERE Sbjct: 101 GYVLKECSSQELCLAIQTV--ANGQYYLTPAILSTLIGDYLRLTENEEQGSDCPLSEREL 158 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G +++IAE+L +S +TV+ + KL + + AIR GY+ Sbjct: 159 DVLKLLVKGCNAKQIAEQLSISKNTVDTHRRHILDKLGCNSMAELTRYAIREGYL 213 >gi|240173027|ref|ZP_04751685.1| regulatory protein, LuxR [Mycobacterium kansasii ATCC 12478] Length = 1097 Score = 36.2 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K+ +S +LT E ++L DG + EIA +L +S TV +L KL +R+Q Sbjct: 1030 KRPASGWASLTPTERDVVRLVADGLANNEIAARLFISRRTVQTHLTHVYAKLGINSRVQ 1088 >gi|297194468|ref|ZP_06911866.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718721|gb|EDY62629.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 227 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 30/62 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G + EIAE LGLS T ++ KL A +R Q + A G Sbjct: 162 LTDRERQVLTLVARGLNNTEIAESLGLSPLTAKTHVSRIMSKLCARDRAQLVIVAYESGL 221 Query: 234 IC 235 + Sbjct: 222 VT 223 >gi|149927753|ref|ZP_01916005.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Limnobacter sp. MED105] gi|149823579|gb|EDM82809.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Limnobacter sp. MED105] Length = 223 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 16/53 (30%), Positives = 29/53 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT ++ + G +++EIA KL LS T+ +L +++ NR QA++ Sbjct: 157 LTHKQQQVMHFLASGLSNKEIARKLDLSPETIKTHLREIFTRMNVKNRTQAVS 209 >gi|94495174|ref|ZP_01301755.1| regulatory protein, LuxR [Sphingomonas sp. SKA58] gi|94425440|gb|EAT10460.1| regulatory protein, LuxR [Sphingomonas sp. SKA58] Length = 893 Score = 36.2 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L RE L + G + EI ++LGL+ TV Y+ KL R QA+ +A + G Sbjct: 832 LANREVDILTMVSGGLRNREIGDRLGLTEGTVKWYMQQIYDKLGVRRRPQAVLRARQLGI 891 Query: 234 I 234 + Sbjct: 892 L 892 >gi|27376447|ref|NP_767976.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] gi|27349587|dbj|BAC46601.1| two-component response regulator [Bradyrhizobium japonicum USDA 110] Length = 225 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G++ EIA LGLS TV ++ + KL+ R +A+ +A++ G Sbjct: 162 RLTPREIDILWGIAKGFSYAEIASHLGLSRQTVPGHIKNIYRKLEVHTRSEAVFEAVQQG 221 Query: 233 YI 234 I Sbjct: 222 LI 223 >gi|256380225|ref|YP_003103885.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924528|gb|ACU40039.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 215 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 3/84 (3%) Query: 155 QVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 ++I DF+ R+ A LT RET L + G ++ E+A L ++ TV ++ Sbjct: 130 RLIEDFVRARPARAVRPPALTALTGRETEVLLMVARGLSNAEVARGLNVAEQTVKTHVSR 189 Query: 212 ATVKLDAVNRIQAIAKAIRFGYIC 235 KL +R QA+ A G + Sbjct: 190 VLTKLGLRDRAQAVIAAYESGLVV 213 >gi|269792412|ref|YP_003317316.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100047|gb|ACZ19034.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 227 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 6/110 (5%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA---RNLTERETSCL 182 + YV+ S L + + G Y +V L F +R LT RE L Sbjct: 101 DAYVLKASGMAELLSAIRSVYRGHSYVDPKVAGKLLSTFNRRREERDLLSRLTPREMEVL 160 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G + EIA K+ LS TV ++ KLD V+R QA A + G Sbjct: 161 YWISQGLNNGEIARKMVLSEKTVKNHVSHILKKLDLVDRTQAAVFAWKRG 210 >gi|114047165|ref|YP_737715.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-7] gi|113888607|gb|ABI42658.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 220 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K +S +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA+ Sbjct: 147 KMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAV 206 >gi|113868997|ref|YP_727486.1| response regulator [Ralstonia eutropha H16] gi|113527773|emb|CAJ94118.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 219 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT R+ S L L +G ++ IA +LGL+ +TV ++ + +L R+Q +++ Sbjct: 152 TPAELGLTPRQGSVLALVLEGLPNKVIARRLGLTENTVKEHVSAILQRLGVRTRMQVMSR 211 Query: 228 AIRF 231 RF Sbjct: 212 MERF 215 >gi|77360848|ref|YP_340423.1| response regulator [Pseudoalteromonas haloplanktis TAC125] gi|76875759|emb|CAI86980.1| putative regulator in two-component regulatory system with BarA (LuxR/UhpA familiy) [Pseudoalteromonas haloplanktis TAC125] Length = 216 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 35/66 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S ++L+ERE + + G ++ IAE+L LS TVN+Y KL+ ++ A Sbjct: 145 SPFQSLSERELQIMLMITKGEKAQSIAERLNLSSKTVNSYRYRMFEKLNVSGDVELTHLA 204 Query: 229 IRFGYI 234 IR+ I Sbjct: 205 IRYKMI 210 >gi|238786226|ref|ZP_04630173.1| HTH-type transcriptional regulator malT [Yersinia bercovieri ATCC 43970] gi|238712867|gb|EEQ04932.1| HTH-type transcriptional regulator malT [Yersinia bercovieri ATCC 43970] Length = 903 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF-- 231 LT+RE L L GY++++IA +L ++ T+ ++ + KL +R +A+ +A R Sbjct: 839 LTQREWQVLGLIYSGYSNDQIAGELEVAATTIKTHIRNLYQKLGVAHRQEAVQQAQRLLQ 898 Query: 232 --GYI 234 GYI Sbjct: 899 MMGYI 903 >gi|332851497|ref|ZP_08433494.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332866803|ref|ZP_08437207.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|332874937|ref|ZP_08442788.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] gi|332729950|gb|EGJ61281.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332734411|gb|EGJ65531.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|332736880|gb|EGJ67856.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] Length = 227 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE + + +++EIA+KL +SV TVN Y KL + ++ AIR+G Sbjct: 164 SLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYG 223 Query: 233 YI 234 I Sbjct: 224 LI 225 >gi|328884073|emb|CCA57312.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 206 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 32/64 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R +A +LT+RE L G G + EIA L +S TV +LG KL R A Sbjct: 136 RMRGAAGPSLTDRERDILGQLGRGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGA 195 Query: 225 IAKA 228 +A A Sbjct: 196 VAVA 199 >gi|257465711|ref|ZP_05630082.1| ATP-dependent transcriptional regulator [Actinobacillus minor 202] gi|257451371|gb|EEV25414.1| ATP-dependent transcriptional regulator [Actinobacillus minor 202] Length = 905 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L L GY++E+I+++L +++ T+ ++ + K+ NR +AI Sbjct: 841 LTQREWQVLGLIYSGYSNEQISQELVVAMTTIKTHIRNLYQKIGVANRAEAI 892 >gi|229015963|ref|ZP_04172924.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229022180|ref|ZP_04178730.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228739111|gb|EEL89557.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228745323|gb|EEL95364.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 213 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 142 KLESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAV 201 Query: 226 AKAIR 230 A+R Sbjct: 202 IYAVR 206 >gi|167767008|ref|ZP_02439061.1| hypothetical protein CLOSS21_01526 [Clostridium sp. SS2/1] gi|167710983|gb|EDS21562.1| hypothetical protein CLOSS21_01526 [Clostridium sp. SS2/1] gi|291559651|emb|CBL38451.1| hypothetical protein CL2_15100 [butyrate-producing bacterium SSC/2] Length = 961 Score = 36.2 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 16/26 (61%), Positives = 20/26 (76%) Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYL 209 L+G YT +EIA+KLG+S TVN YL Sbjct: 933 LSGSNYTIDEIAKKLGVSASTVNKYL 958 >gi|163755235|ref|ZP_02162355.1| DNA-binding response regulator, LuxR family protein [Kordia algicida OT-1] gi|161324655|gb|EDP95984.1| DNA-binding response regulator, LuxR family protein [Kordia algicida OT-1] Length = 226 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 29/47 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LT+RE L+L + YT+ EIAEKL +S TV + + +K ++ N Sbjct: 160 LTKREKEILELICNQYTTNEIAEKLFISPRTVEGHRNNLLLKTESKN 206 >gi|148553426|ref|YP_001261008.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148498616|gb|ABQ66870.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 861 Score = 36.2 bits (82), Expect = 4.0, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 E G Y+ + D R + L+ RE L G +++ AE+L +S TV Sbjct: 781 ERLGQSYEHVID-------RDAGGSYLSAREREILLSLAQGESNKSTAERLNVSEATVKF 833 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L KL A NR++AIA A + G + Sbjct: 834 HLQRIYRKLGAHNRVKAIAVAQQQGLL 860 >gi|160875718|ref|YP_001555034.1| two component LuxR family transcriptional regulator [Shewanella baltica OS195] gi|160861240|gb|ABX49774.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|315267907|gb|ADT94760.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 220 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K +S +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA+ Sbjct: 147 KMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAV 206 >gi|89073965|ref|ZP_01160471.1| putative response regulator (repressor) in two-component regulatorysystem with UhpB (LuxR/UhpA family protein) [Photobacterium sp. SKA34] gi|89050293|gb|EAR55797.1| putative response regulator (repressor) in two-component regulatorysystem with UhpB (LuxR/UhpA family protein) [Photobacterium sp. SKA34] Length = 202 Score = 36.2 bits (82), Expect = 4.0, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKL 198 L V A G CY + L + A LT+RE +L G + +A KL Sbjct: 108 LVQAVRTAAQGGCYLTPDIAINLVSPNCNKQALGKLTKREHQISELLSTGLDVKTVAVKL 167 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQ 223 GLS TV+ + +A KLD N ++ Sbjct: 168 GLSHKTVHVHRANAMDKLDVKNNVE 192 >gi|325275863|ref|ZP_08141720.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324099004|gb|EGB96993.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 280 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 160 FLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 F + ++R AA N LTERE QL G++++ +AE+LG+S T+ ++ + Sbjct: 182 FENILEQRIHAALNNFGSSLLTERECRIAQLILRGHSTKSLAERLGVSEDTIKSHRKNVY 241 Query: 214 VKLD 217 KLD Sbjct: 242 AKLD 245 >gi|300743763|ref|ZP_07072783.1| DNA-binding response regulator, LuxR family [Rothia dentocariosa M567] gi|300380124|gb|EFJ76687.1| DNA-binding response regulator, LuxR family [Rothia dentocariosa M567] Length = 201 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 37/80 (46%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ D L + A L R L+L +G T +IA +L LS TV YL A Sbjct: 122 KVVVDSALLLSGATLPANPLKPRHQDVLKLTMEGKTVNQIARELYLSHGTVKNYLSEAIQ 181 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 L +R++A A G+I Sbjct: 182 LLHCTSRVEAAHTARTNGWI 201 >gi|299529754|ref|ZP_07043189.1| transcriptional regulator, luxR family protein [Comamonas testosteroni S44] gi|298722272|gb|EFI63194.1| transcriptional regulator, luxR family protein [Comamonas testosteroni S44] Length = 239 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 28/62 (45%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L G EIA LGLS TV +L +L QAI AIR G Sbjct: 177 LSDREREVLAWTAAGRRQTEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRMAIRNGE 236 Query: 234 IC 235 I Sbjct: 237 IV 238 >gi|325982862|ref|YP_004295264.1| two component transcriptional regulator, LuxR family [Nitrosomonas sp. AL212] gi|325532381|gb|ADZ27102.1| two component transcriptional regulator, LuxR family [Nitrosomonas sp. AL212] Length = 205 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 18/120 (15%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------ 173 P+ + K G V F L VI E C + F E K+ S ARN Sbjct: 89 IPMSVRAIKGGAVDF------LTKPVIREKLLVCVR--AAFAEAKKRISDIARNKEMMSC 140 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE + LA G+T++EIA LG+S TV + K A N + +A+ +R Sbjct: 141 LIKLTGREREVMTLAVQGHTNKEIASCLGISHRTVEIHKSKIMQKTGASNLLD-LARIVR 199 >gi|160885164|ref|ZP_02066167.1| hypothetical protein BACOVA_03162 [Bacteroides ovatus ATCC 8483] gi|156109514|gb|EDO11259.1| hypothetical protein BACOVA_03162 [Bacteroides ovatus ATCC 8483] Length = 259 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 168 SSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S RN L+ERE L+ G +S+EIA L +SV+TVN + + KL N I+A Sbjct: 190 SEEHRNILSEREKEILRCIRKGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACR 249 Query: 227 KA 228 A Sbjct: 250 AA 251 >gi|149278558|ref|ZP_01884694.1| two-component response regulator [Pedobacter sp. BAL39] gi|149230553|gb|EDM35936.1| two-component response regulator [Pedobacter sp. BAL39] Length = 214 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 31/64 (48%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A + T+RE LQL G+T+ EIA+KL LS TV + K + N I A Sbjct: 151 ADDFTQREMEILQLIALGHTNSEIADKLFLSKRTVEGHRQLLLNKTQSRNSAHLIKTATV 210 Query: 231 FGYI 234 G + Sbjct: 211 MGLV 214 >gi|89073186|ref|ZP_01159725.1| putative nitrate/nitrite response regulator protein [Photobacterium sp. SKA34] gi|89051139|gb|EAR56596.1| putative nitrate/nitrite response regulator protein [Photobacterium sp. SKA34] Length = 208 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%) Query: 151 GACY-QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 G Y ++ + LE ++ LTERET LQ G + +IAE+L +S TV ++ Sbjct: 124 GKAYSDIVKESLESPNTPTNILSQLTERETQILQEVAKGQRNRQIAEQLFISEATVKVHM 183 Query: 210 GSATVKLDAVNRIQA 224 S KL +R A Sbjct: 184 KSLLKKLQVKSRTAA 198 >gi|307330023|ref|ZP_07609174.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306884284|gb|EFN15319.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 216 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G +IA++L ++ TV ++GS KL +R QAI +A + G Sbjct: 153 TLTAREREVLDLLAAGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVRDRAQAIVRARQAG 212 >gi|315501316|ref|YP_004080203.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315407935|gb|ADU06052.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 225 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L+L GY +EIA++L +S+ TV ++ + KL NR + Sbjct: 164 QLTNREREVLRLLARGYAYKEIAKELYISIKTVETHVSNVLRKLQMSNRYE 214 >gi|271965767|ref|YP_003339963.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508942|gb|ACZ87220.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 200 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+ + G + EIA ++ L+ TV YL +A KL A +R A +A G+ Sbjct: 140 LSERELEVLRASRTGASINEIAAQVHLAPGTVRNYLSAAMAKLGAGSRHAAAHRAWEEGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|237714874|ref|ZP_04545355.1| transcriptional regulator [Bacteroides sp. D1] gi|262406858|ref|ZP_06083407.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|294647174|ref|ZP_06724773.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294809214|ref|ZP_06767930.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] gi|298483630|ref|ZP_07001805.1| transcriptional regulator [Bacteroides sp. D22] gi|229445199|gb|EEO50990.1| transcriptional regulator [Bacteroides sp. D1] gi|262355561|gb|EEZ04652.1| transcriptional regulator [Bacteroides sp. 2_1_22] gi|292637461|gb|EFF55880.1| transcriptional regulator, LuxR family [Bacteroides ovatus SD CC 2a] gi|294443608|gb|EFG12359.1| transcriptional regulator, LuxR family [Bacteroides xylanisolvens SD CC 1b] gi|295084732|emb|CBK66255.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacteroides xylanisolvens XB1A] gi|298270200|gb|EFI11786.1| transcriptional regulator [Bacteroides sp. D22] Length = 259 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 168 SSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S RN L+ERE L+ G +S+EIA L +SV+TVN + + KL N I+A Sbjct: 190 SEEHRNILSEREKEILRCIRKGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACR 249 Query: 227 KA 228 A Sbjct: 250 AA 251 >gi|258650793|ref|YP_003199949.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554018|gb|ACV76960.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 215 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G T+ EIA +L ++ TV A++ S KL A NR++ A G Sbjct: 155 LTAREEEVLVTVAQGRTNSEIASQLFITSSTVKAHVASLMRKLGARNRVEVAMWAHETGR 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|229187725|ref|ZP_04314860.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228595717|gb|EEK53402.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 213 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 142 KVESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAV 201 Query: 226 AKAIR 230 A+R Sbjct: 202 IYAVR 206 >gi|229819546|ref|YP_002881072.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565459|gb|ACQ79310.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 222 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L +G ++ EIA++ +S TV ++G KL +R+QA+ A G Sbjct: 158 ELTPRELEVLVAVAEGLSNLEIADRFVVSEATVKTHVGRVLAKLGLRDRVQAVVLAYETG 217 Query: 233 YI 234 + Sbjct: 218 LV 219 >gi|226305790|ref|YP_002765750.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184907|dbj|BAH33011.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 212 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT+RE+ L L +G +++EIA+ L L V TV ++ + K NR++ Sbjct: 153 LTDRESQVLALVAEGKSNQEIADTLHLGVTTVKTHVANLMSKTGCDNRVR 202 >gi|170767477|ref|ZP_02901930.1| capsular synthesis regulator component B [Escherichia albertii TW07627] gi|170123811|gb|EDS92742.1| capsular synthesis regulator component B [Escherichia albertii TW07627] Length = 216 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|227114442|ref|ZP_03828098.1| transcriptional regulator RcsB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328228|ref|ZP_03832252.1| transcriptional regulator RcsB [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|261822452|ref|YP_003260558.1| transcriptional regulator RcsB [Pectobacterium wasabiae WPP163] gi|126009877|gb|ABN64195.1| RcsB [Pectobacterium carotovorum subsp. carotovorum] gi|261606465|gb|ACX88951.1| two component transcriptional regulator, LuxR family [Pectobacterium wasabiae WPP163] Length = 216 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA KL Sbjct: 134 VSKVLEKISASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMTKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|121609879|ref|YP_997686.1| regulatory protein LuxR [Verminephrobacter eiseniae EF01-2] gi|121554519|gb|ABM58668.1| regulatory protein, LuxR [Verminephrobacter eiseniae EF01-2] Length = 919 Score = 36.2 bits (82), Expect = 4.1, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 30/59 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 SAA L RE L L +++IA LG++ HTV +L KL R +A+A+ Sbjct: 847 SAADLLNAREREVLSLVAQAMPNKKIARVLGVTPHTVKWHLRKVYSKLGVAERGEAVAR 905 >gi|307332571|ref|ZP_07611620.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306881779|gb|EFN12916.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 231 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 29/52 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE L L G ++ EIAE+L ++ TV ++ VKL +R QA Sbjct: 166 ELTERENEVLVLVAQGCSNAEIAERLIVAESTVKTHVSRILVKLGLRDRTQA 217 >gi|300790034|ref|YP_003770325.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799548|gb|ADJ49923.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 218 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L G ++ EIA KL + TV ++G KL +R+ A+ A G Sbjct: 154 LTEREKDVLGLIARGLSNSEIAAKLYIGETTVKTHVGRVLGKLRLRDRVHAVVFAYESGL 213 Query: 234 I 234 + Sbjct: 214 V 214 >gi|298383718|ref|ZP_06993279.1| transcriptional regulator [Bacteroides sp. 1_1_14] gi|298263322|gb|EFI06185.1| transcriptional regulator [Bacteroides sp. 1_1_14] Length = 257 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 168 SSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S RN L+ERE L+ G +S+EIA L +SV+TVN + + KL N I+A Sbjct: 190 SEEHRNILSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACR 249 Query: 227 KA 228 A Sbjct: 250 AA 251 >gi|291301112|ref|YP_003512390.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570332|gb|ADD43297.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 215 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L G T+ EIA +L ++ TV A+L S KL A NR++ Sbjct: 154 RLTAREEEVLVSVAQGRTNNEIASELYITQSTVKAHLASLMRKLGARNRVE 204 >gi|255039459|ref|YP_003090080.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254952215|gb|ACT96915.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 212 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 30/60 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE L+ G+T +EIA +L LS HTV Y S KL I A++ G Sbjct: 146 HLSPREKQVLRKVCSGHTIKEIAYELKLSTHTVQYYHRSVMDKLKVRRTTDLIVYAMQHG 205 >gi|169350169|ref|ZP_02867107.1| hypothetical protein CLOSPI_00913 [Clostridium spiroforme DSM 1552] gi|169292952|gb|EDS75085.1| hypothetical protein CLOSPI_00913 [Clostridium spiroforme DSM 1552] Length = 67 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L + ++++EIA+ L +S TV ++ + KL +RIQA+ + +R Sbjct: 5 LTPREREVFTLLINNHSTKEIAQILKISEKTVRNHISNVIQKLGVDSRIQAVFELVRL 62 >gi|152985508|ref|YP_001347971.1| LuxR family transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960666|gb|ABR82691.1| transcriptional regulator, LuxR family [Pseudomonas aeruginosa PA7] Length = 269 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 32/53 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE+ ++L DG++++EIA++L LS+ T+ + KL+ + + A Sbjct: 203 LTARESDVIRLMLDGHSNKEIADRLALSIATIKVHRRHIYAKLNVKSHSEVFA 255 >gi|219847289|ref|YP_002461722.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541548|gb|ACL23286.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 217 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 31/58 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+L G +++EIA+ L +S TV ++ + KL +R Q A+R Sbjct: 151 QLTPREMDVLRLVAKGMSNKEIADTLIVSEKTVKTHISNILSKLHLADRTQVAIYALR 208 >gi|59801167|ref|YP_207879.1| NarL/NarP [Neisseria gonorrhoeae FA 1090] gi|194098688|ref|YP_002001750.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945] gi|239998996|ref|ZP_04718920.1| NarL/NarP [Neisseria gonorrhoeae 35/02] gi|240112982|ref|ZP_04727472.1| NarL/NarP [Neisseria gonorrhoeae MS11] gi|240125768|ref|ZP_04738654.1| NarL/NarP [Neisseria gonorrhoeae SK-92-679] gi|240128290|ref|ZP_04740951.1| NarL/NarP [Neisseria gonorrhoeae SK-93-1035] gi|254493787|ref|ZP_05106958.1| two-component system response regulator [Neisseria gonorrhoeae 1291] gi|260440452|ref|ZP_05794268.1| NarL/NarP [Neisseria gonorrhoeae DGI2] gi|268594844|ref|ZP_06129011.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268599062|ref|ZP_06133229.1| two-component system response regulator [Neisseria gonorrhoeae MS11] gi|268684366|ref|ZP_06151228.1| two-component system response regulator [Neisseria gonorrhoeae SK-92-679] gi|268686687|ref|ZP_06153549.1| two-component system response regulator [Neisseria gonorrhoeae SK-93-1035] gi|291043751|ref|ZP_06569467.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293399036|ref|ZP_06643201.1| two-component system, NarL family, nitrate/nitrite response regulator NarL [Neisseria gonorrhoeae F62] gi|59718062|gb|AAW89467.1| putative nitrite/nitrate two-component system transcriptional response regulator [Neisseria gonorrhoeae FA 1090] gi|193933978|gb|ACF29802.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945] gi|226512827|gb|EEH62172.1| two-component system response regulator [Neisseria gonorrhoeae 1291] gi|268548233|gb|EEZ43651.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268583193|gb|EEZ47869.1| two-component system response regulator [Neisseria gonorrhoeae MS11] gi|268624650|gb|EEZ57050.1| two-component system response regulator [Neisseria gonorrhoeae SK-92-679] gi|268626971|gb|EEZ59371.1| two-component system response regulator [Neisseria gonorrhoeae SK-93-1035] gi|291012214|gb|EFE04203.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610450|gb|EFF39560.1| two-component system, NarL family, nitrate/nitrite response regulator NarL [Neisseria gonorrhoeae F62] gi|317164288|gb|ADV07829.1| NarL/NarP [Neisseria gonorrhoeae TCDC-NG08107] Length = 218 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R+ A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA Sbjct: 145 QRTQALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAA 204 Query: 226 AKAIR 230 AIR Sbjct: 205 VYAIR 209 >gi|113969929|ref|YP_733722.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-4] gi|113884613|gb|ABI38665.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-4] Length = 220 Score = 36.2 bits (82), Expect = 4.1, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K +S +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA+ Sbjct: 147 KMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAV 206 >gi|304409083|ref|ZP_07390704.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307303086|ref|ZP_07582841.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|304352904|gb|EFM17301.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306913446|gb|EFN43868.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] Length = 220 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K +S +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA+ Sbjct: 147 KMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAV 206 >gi|284045835|ref|YP_003396175.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950056|gb|ADB52800.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 214 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 3/96 (3%) Query: 142 ANEVIIEAHGACYQVITDFLEL-FKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKL 198 A V+ + + + D L + ++RS A L+ RE L+LA DG T IA+ L Sbjct: 118 AVSVVADGGSLLPRAVHDTLTMALRQRSEVPAGPVLSTRELEVLRLASDGLTVSAIAQAL 177 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + TV +L K +R A+A R G++ Sbjct: 178 IIGDATVKTHLQHIYDKFGVSDRAAAVAHGFRLGFL 213 >gi|320009929|gb|ADW04779.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 222 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 11/107 (10%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK--KRSSAAR--NLTER 177 +G+++ + LA+ V + A G ++IT+F ++ + + + AR +LTER Sbjct: 103 SGFLLKDASARQLADGVRVVASGEALLAPTVTRRLITEFSKIAEAPRPPAMARIGDLTER 162 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ET L L G ++ EIA L ++ T+ ++ VKL +R QA Sbjct: 163 ETEVLVLIAQGLSNLEIASHLVVAESTIKTHVSRILVKLGLRDRTQA 209 >gi|238061007|ref|ZP_04605716.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882818|gb|EEP71646.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 231 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L+L GY +EIA++L +S+ TV ++ + KL NR + Sbjct: 170 QLTNREREVLRLLARGYAYKEIAKELYISIKTVETHVSNVLRKLQMSNRYE 220 >gi|169825087|ref|YP_001692698.1| two-component response regulator [Finegoldia magna ATCC 29328] gi|167831892|dbj|BAG08808.1| two-component response regulator [Finegoldia magna ATCC 29328] Length = 208 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 37/66 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + + LT RE L+L G +++IAE+LG+S++TV ++ K + +R Q +A Sbjct: 139 AKSTELTPREIEVLRLLTTGAGNDQIAEELGISLNTVKTHIKHMLDKTEFTSRTQLAIQA 198 Query: 229 IRFGYI 234 G++ Sbjct: 199 RITGFV 204 >gi|157691669|ref|YP_001486131.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|194014892|ref|ZP_03053509.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] gi|157680427|gb|ABV61571.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|194013918|gb|EDW23483.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] Length = 216 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 8/94 (8%) Query: 146 IIEAHGACYQV---ITDFL-----ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 +I+ YQ+ IT+FL E +++ + LT RE L G +++EIA Sbjct: 114 MIDVQKGTYQLDGHITNFLVQHLTEPKEQKWELMKELTNRERDVLFEIAKGKSNKEIASS 173 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L +S TV ++ KL+ +R QA A+ + Sbjct: 174 LFISEKTVKTHVSHVLSKLELADRTQAALYAVDY 207 >gi|72162244|ref|YP_289901.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71915976|gb|AAZ55878.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 215 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%) Query: 168 SSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + AAR L +ERE + L G ++ EIA +LG+ TV A++ KL+ NR+Q Sbjct: 146 AEAARRLEVLSERERAVLVGVARGLSNAEIAAELGMREATVKAHVSRILTKLEKNNRVQ 204 >gi|89073041|ref|ZP_01159588.1| response regulator [Photobacterium sp. SKA34] gi|90578924|ref|ZP_01234734.1| response regulator [Vibrio angustum S14] gi|89051259|gb|EAR56715.1| response regulator [Photobacterium sp. SKA34] gi|90439757|gb|EAS64938.1| response regulator [Vibrio angustum S14] Length = 214 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ERE + + G +I+E+L LS TVN+Y KLD ++ AIR Sbjct: 147 KELSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLDISGDVELTHLAIRH 206 Query: 232 GYI 234 G + Sbjct: 207 GML 209 >gi|88811894|ref|ZP_01127147.1| DNA-binding response regulator, LuxR family protein [Nitrococcus mobilis Nb-231] gi|88790778|gb|EAR21892.1| DNA-binding response regulator, LuxR family protein [Nitrococcus mobilis Nb-231] Length = 245 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 8/87 (9%) Query: 156 VITDFL--------ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 V+TD L + K+ LT R+ LQL +G T+ +IA+ L LS+ TV A Sbjct: 148 VVTDVLDECLDYLGQTSKQEGGELEVLTPRQRQILQLIVEGNTNSDIADLLHLSIKTVEA 207 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +LD + + A+R G I Sbjct: 208 HRSELMHRLDIHDVPSLVRYAMRMGII 234 >gi|84394223|ref|ZP_00992951.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01] gi|86148831|ref|ZP_01067096.1| response regulator [Vibrio sp. MED222] gi|148982309|ref|ZP_01816707.1| response regulator [Vibrionales bacterium SWAT-3] gi|218709938|ref|YP_002417559.1| response regulator [Vibrio splendidus LGP32] gi|84375137|gb|EAP92056.1| transcriptional regulator, LuxR family [Vibrio splendidus 12B01] gi|85833382|gb|EAQ51575.1| response regulator [Vibrio sp. MED222] gi|145960543|gb|EDK25902.1| response regulator [Vibrionales bacterium SWAT-3] gi|218322957|emb|CAV19134.1| Similar to transcriptional regulator, LuxR family [Vibrio splendidus LGP32] Length = 214 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE + + G +I+E+L LS TVN+Y KLD ++ AIR G Sbjct: 148 DLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDISGDVELTHLAIRHG 207 Query: 233 YI 234 + Sbjct: 208 ML 209 >gi|330399513|ref|YP_004030611.1| hypothetical protein RBRH_00667 [Burkholderia rhizoxinica HKI 454] gi|312170250|emb|CBW77289.1| unnamed protein product [Burkholderia rhizoxinica HKI 454] Length = 223 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 30/59 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L E+E LA DG +I+ ++ LS TV+A L S KL ++ AIR+G Sbjct: 155 LDEKEMRTFALAADGAALSDISAQIDLSTKTVSALLKSVKSKLGVESQADITKLAIRYG 213 >gi|284029210|ref|YP_003379141.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808503|gb|ADB30342.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 213 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 28/49 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L++RE L+L GY +E+A +L +SV TV ++ S KL NR Sbjct: 152 RLSQREREVLRLIARGYAYKEVARELFISVKTVETHVSSVLRKLQLSNR 200 >gi|302869854|ref|YP_003838491.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|302572713|gb|ADL48915.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] Length = 225 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L+L GY +EIA++L +S+ TV ++ + KL NR + Sbjct: 164 QLTNREREVLRLLARGYAYKEIAKELYISIKTVETHVSNVLRKLQMSNRYE 214 >gi|170688263|ref|ZP_02879473.1| germination protein GerE [Bacillus anthracis str. A0465] gi|254687022|ref|ZP_05150880.1| germination protein GerE [Bacillus anthracis str. CNEVA-9066] gi|170667769|gb|EDT18522.1| germination protein GerE [Bacillus anthracis str. A0465] Length = 74 Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|127513542|ref|YP_001094739.1| two component LuxR family transcriptional regulator [Shewanella loihica PV-4] gi|126638837|gb|ABO24480.1| two component transcriptional regulator, LuxR family [Shewanella loihica PV-4] Length = 222 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 33/58 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 SS +L+ R+ L + DG +++IA +LGLS T+ A+ + +KL R QA+ Sbjct: 145 SSKIASLSPRQHKILMMFADGLLNKQIAYELGLSEATIKAHASAIFLKLGVHTRTQAV 202 >gi|325972574|ref|YP_004248765.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy] gi|324027812|gb|ADY14571.1| transcriptional regulator, LuxR family [Spirochaeta sp. Buddy] Length = 305 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 33/50 (66%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +++RE + L +G +++EIA+KL +S +TV ++ + KL+ NR+Q Sbjct: 249 ISDREAEIVSLLVEGLSNQEIAKKLFISPNTVKTHIKNIYAKLEVNNRLQ 298 >gi|323494117|ref|ZP_08099233.1| transcriptional regulator MalT [Vibrio brasiliensis LMG 20546] gi|323311744|gb|EGA64892.1| transcriptional regulator MalT [Vibrio brasiliensis LMG 20546] Length = 902 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAVKTA 893 >gi|317494553|ref|ZP_07952966.1| luxR family bacterial regulatory protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917483|gb|EFV38829.1| luxR family bacterial regulatory protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 920 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L GY++E+IA +L ++ T+ ++ + KL +R +A+ +A Sbjct: 855 LTQREWQVLGLIYSGYSNEQIASELDVAATTIKTHIRNLYQKLGVAHRQEAVQQA 909 >gi|289768170|ref|ZP_06527548.1| LuxR-family transcriptional regulator [Streptomyces lividans TK24] gi|289698369|gb|EFD65798.1| LuxR-family transcriptional regulator [Streptomyces lividans TK24] Length = 57 Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 25/39 (64%) Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+LG+ TV +YL SA KL A R +A+A A R G++ Sbjct: 18 ERLGVGPETVKSYLRSAMRKLGARTRTEAVAAARRTGWL 56 >gi|256784285|ref|ZP_05522716.1| response regulator [Streptomyces lividans TK24] Length = 58 Score = 36.2 bits (82), Expect = 4.2, Method: Composition-based stats. Identities = 18/39 (46%), Positives = 25/39 (64%) Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+LG+ TV +YL SA KL A R +A+A A R G++ Sbjct: 19 ERLGVGPETVKSYLRSAMRKLGARTRTEAVAAARRTGWL 57 >gi|237718307|ref|ZP_04548788.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|229452491|gb|EEO58282.1| transcriptional regulator [Bacteroides sp. 2_2_4] Length = 259 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 168 SSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S RN L+ERE L+ G +S+EIA L +SV+TVN + + KL N I+A Sbjct: 190 SEEHRNILSEREKEILRCIRKGLSSKEIAAALYISVNTVNRHRQNILEKLSVGNSIEACR 249 Query: 227 KA 228 A Sbjct: 250 AA 251 >gi|229114235|ref|ZP_04243656.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228669255|gb|EEL24676.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 213 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 142 KLESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAV 201 Query: 226 AKAIR 230 A+R Sbjct: 202 IYAVR 206 >gi|194290603|ref|YP_002006510.1| LuxR family transcriptional regulator [Cupriavidus taiwanensis LMG 19424] gi|193224438|emb|CAQ70449.1| response regulator, LuxR family [Cupriavidus taiwanensis LMG 19424] Length = 219 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 36/64 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT R+ S L L +G ++ IA +LGL+ +TV ++ + +L R+Q +++ Sbjct: 152 TPAELGLTPRQGSVLALVLEGLPNKVIARRLGLTENTVKEHVSAILQRLGVRTRMQVMSR 211 Query: 228 AIRF 231 RF Sbjct: 212 MERF 215 >gi|167572884|ref|ZP_02365758.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 261 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 31/60 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L T+++IA LGLSV T+ Y+ + K A ++ + I A GY Sbjct: 161 LTERERQVLFFLARNKTAKDIANILGLSVRTIEQYMENLRCKFSASSKNELIDIAAGAGY 220 >gi|217973035|ref|YP_002357786.1| LuxR family two component transcriptional regulator [Shewanella baltica OS223] gi|217498170|gb|ACK46363.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS223] Length = 220 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K +S +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA+ Sbjct: 147 KMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAV 206 >gi|119489383|ref|ZP_01622163.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119454656|gb|EAW35802.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 219 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 32/53 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + LT RE L+L G GY+++EIA+ L ++ TV ++ S +L +R QA Sbjct: 154 KRLTPRELEVLKLIGKGYSNKEIAQTLYITERTVKNHVSSLLSRLSLRDRTQA 206 >gi|126174706|ref|YP_001050855.1| two component LuxR family transcriptional regulator [Shewanella baltica OS155] gi|153001005|ref|YP_001366686.1| two component LuxR family transcriptional regulator [Shewanella baltica OS185] gi|125997911|gb|ABN61986.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS155] gi|151365623|gb|ABS08623.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS185] Length = 220 Score = 36.2 bits (82), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K +S +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA+ Sbjct: 147 KMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAV 206 >gi|330446242|ref|ZP_08309894.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490433|dbj|GAA04391.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 214 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ERE + + G +I+E+L LS TVN+Y KLD ++ AIR Sbjct: 147 KELSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLDISGDVELTHLAIRH 206 Query: 232 GYI 234 G + Sbjct: 207 GML 209 >gi|296454799|ref|YP_003661943.1| LuxR family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296184231|gb|ADH01113.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. longum JDM301] Length = 185 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + Sbjct: 124 RLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTE 174 >gi|311744719|ref|ZP_07718516.1| nitrate/nitrite response regulator protein NarL [Aeromicrobium marinum DSM 15272] gi|311312028|gb|EFQ81948.1| nitrate/nitrite response regulator protein NarL [Aeromicrobium marinum DSM 15272] Length = 222 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 29/49 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LTERE ++L GY +E+A++L +S+ TV ++ S KL +R Sbjct: 161 RLTEREREVMRLIARGYAYKEVAKELFISIKTVETHVSSVLRKLQLSSR 209 >gi|288923606|ref|ZP_06417715.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288345043|gb|EFC79463.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 152 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 29/50 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE ++L G+++++IA+ L ++VHTV ++ + NR Q Sbjct: 70 LSHRERDVIELVASGHSNQQIADTLDVTVHTVKHHVTNVMRTTQCANRTQ 119 >gi|312198558|ref|YP_004018619.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311229894|gb|ADP82749.1| regulatory protein LuxR [Frankia sp. EuI1c] Length = 397 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 26/48 (54%) Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG E +A LG+SV TV + +LDA +R QA A R G++ Sbjct: 350 DGLKDEAVARALGVSVRTVRRMVAELMHRLDARSRFQAALLAQRKGWL 397 >gi|269219143|ref|ZP_06162997.1| DNA-binding response regulator VraR [Actinomyces sp. oral taxon 848 str. F0332] gi|269211290|gb|EEZ77630.1| DNA-binding response regulator VraR [Actinomyces sp. oral taxon 848 str. F0332] Length = 235 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/84 (22%), Positives = 41/84 (48%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 G +++ ++L S ++RE L+L +++ EIA +L + TV ++ Sbjct: 150 GPTSRLVKNYLVPLPPDSGVNVQFSKREMDVLRLLCQAHSNSEIAAQLYVQESTVKTHIS 209 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S KL+ +R++ + +A G + Sbjct: 210 SIMAKLEVNSRLKVVVRAYELGLV 233 >gi|229010064|ref|ZP_04167278.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|229136711|ref|ZP_04265367.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228646748|gb|EEL02927.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228751197|gb|EEM01009.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 213 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 142 KLESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAV 201 Query: 226 AKAIR 230 A+R Sbjct: 202 IYAVR 206 >gi|255038541|ref|YP_003089162.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254951297|gb|ACT95997.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 206 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +L+ RET + L +G + +IAEKL L + TV+ Y KL N ++ I K Sbjct: 150 SLSPRETDVMNLLKEGLGTAKIAEKLNLQLSTVSTYKARIFEKLGVKNIVELITK 204 >gi|226305274|ref|YP_002765232.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184389|dbj|BAH32493.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 210 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +SS+ LT+RE L+L +G ++ +I E+L +S TV ++ + KL+ R +A+ Sbjct: 143 QSSSKERLTDRELEVLRLLANGLSNIKIGERLFISPTTVKFHVSNIMRKLEVSRRAEAVY 202 Query: 227 KAIRFGYI 234 A + G I Sbjct: 203 AASKQGLI 210 >gi|261404248|ref|YP_003240489.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280711|gb|ACX62682.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 217 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE +L G + EIA+ L ++ T Y+ + KL+ V+R QAI + Sbjct: 159 LTEREEELARLMVQGLNNREIADMLHIAEGTARNYISNLYSKLEVVDRAQAIVR 212 >gi|89097699|ref|ZP_01170587.1| YhcZ [Bacillus sp. NRRL B-14911] gi|89087558|gb|EAR66671.1| YhcZ [Bacillus sp. NRRL B-14911] Length = 211 Score = 36.2 bits (82), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K+ S LT+RE L+ G +++EIA L ++ TV ++ + KL+ +R QA Sbjct: 143 KKKSPIDELTKRELDVLKEIAKGKSNKEIAASLFITEKTVKTHVSNLLSKLEISDRTQAA 202 Query: 226 AKAIR 230 A+R Sbjct: 203 LLAVR 207 >gi|298243753|ref|ZP_06967560.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556807|gb|EFH90671.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 221 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLTERE L+L G ++++IA L + TV ++ KL +R QA A R Sbjct: 145 NLTEREADVLRLLAQGRSNKDIARHLHIVEDTVKTHVRHILSKLGVQSRTQAALYATRLN 204 Query: 233 YI 234 + Sbjct: 205 LV 206 >gi|302867410|ref|YP_003836047.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315506180|ref|YP_004085067.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302570269|gb|ADL46471.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412799|gb|ADU10916.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 227 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G ++ EIA L +S TV ++G KL +R+QA+ A G Sbjct: 163 LTDREREVLTHMARGLSNAEIARLLSVSETTVKTHVGHVLTKLRLRDRVQAVVLAYETGL 222 Query: 234 I 234 + Sbjct: 223 V 223 >gi|269967734|ref|ZP_06181782.1| response regulator (repressor) in two-component regulatory system with UhpB [Vibrio alginolyticus 40B] gi|269827640|gb|EEZ81926.1| response regulator (repressor) in two-component regulatory system with UhpB [Vibrio alginolyticus 40B] Length = 202 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Query: 141 LANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 L V A G CY L+L +++ LT+RE QL +G + +A +L Sbjct: 108 LIQAVRTSASGGCYLTSDIALKLATPSDNTTSLCQLTKRENEVCQLLANGLDVKSVAAEL 167 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQ 223 GLS TV+ + +A KL N ++ Sbjct: 168 GLSHKTVHVHRANAIDKLGVKNNVE 192 >gi|240950215|ref|ZP_04754502.1| ATP-dependent transcriptional regulator [Actinobacillus minor NM305] gi|240295302|gb|EER46088.1| ATP-dependent transcriptional regulator [Actinobacillus minor NM305] Length = 905 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L L GY++E+I+++L +++ T+ ++ + K+ NR +AI Sbjct: 841 LTQREWQVLGLIYSGYSNEQISQELVVAMTTIKTHIRNLYQKIGVANRAEAI 892 >gi|240014094|ref|ZP_04721007.1| NarL/NarP [Neisseria gonorrhoeae DGI18] gi|240016529|ref|ZP_04723069.1| NarL/NarP [Neisseria gonorrhoeae FA6140] gi|240115736|ref|ZP_04729798.1| NarL/NarP [Neisseria gonorrhoeae PID18] gi|240118032|ref|ZP_04732094.1| NarL/NarP [Neisseria gonorrhoeae PID1] gi|240121656|ref|ZP_04734618.1| NarL/NarP [Neisseria gonorrhoeae PID24-1] gi|268601415|ref|ZP_06135582.1| two-component system response regulator [Neisseria gonorrhoeae PID18] gi|268603746|ref|ZP_06137913.1| two-component system response regulator [Neisseria gonorrhoeae PID1] gi|268585546|gb|EEZ50222.1| two-component system response regulator [Neisseria gonorrhoeae PID18] gi|268587877|gb|EEZ52553.1| two-component system response regulator [Neisseria gonorrhoeae PID1] Length = 218 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 36/65 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R+ A +LT RE L G++++ IA L L+ TV ++ + KL+ +R+QA Sbjct: 145 QRTQALSSLTPRELEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAA 204 Query: 226 AKAIR 230 AIR Sbjct: 205 VYAIR 209 >gi|111017509|ref|YP_700481.1| LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110817039|gb|ABG92323.1| probable transcriptional regulator, LuxR family protein [Rhodococcus jostii RHA1] Length = 430 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 30/60 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L G + IAE+LG+S T+ ++ S KLD NR +A A IR G Sbjct: 358 TLNPRELEVLAHLAVGKRNRAIAEELGISQSTIKFHVASVLEKLDVANRGEAGAIGIRAG 417 >gi|323171895|gb|EFZ57539.1| capsular synthesis regulator component B [Escherichia coli LT-68] gi|332096262|gb|EGJ01265.1| capsular synthesis regulator component B [Shigella dysenteriae 155-74] Length = 213 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 131 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 190 Query: 217 DAVNRI 222 N I Sbjct: 191 GVENDI 196 >gi|16761197|ref|NP_456814.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141109|ref|NP_804451.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213161645|ref|ZP_03347355.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424971|ref|ZP_03357721.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213583277|ref|ZP_03365103.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213617470|ref|ZP_03372296.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646234|ref|ZP_03376287.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857464|ref|ZP_03384435.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289830051|ref|ZP_06547500.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|2500743|sp|Q56127|RCSB_SALTI RecName: Full=Capsular synthesis regulator component B gi|25298772|pir||AC0790 regulator of capsule synthesis B component STY2495 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|1237096|emb|CAA61094.1| RcsB protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|1813333|dbj|BAA19163.1| RcsB [Salmonella enterica subsp. enterica serovar Typhi] gi|16503496|emb|CAD07501.1| regulator of capsule synthesis B component [Salmonella enterica subsp. enterica serovar Typhi] gi|29136735|gb|AAO68300.1| regulator of capsule synthesis B component [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|1588820|prf||2209357B rcsB gene Length = 216 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|88809882|ref|ZP_01125388.1| two-component response regulator [Synechococcus sp. WH 7805] gi|88786266|gb|EAR17427.1| two-component response regulator [Synechococcus sp. WH 7805] Length = 237 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 34/69 (49%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E + + T RE+S LQL +G ++EIA +L S+ V Y+ +K +R Sbjct: 164 EALPAQEPVQHSFTPRESSVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSR 223 Query: 222 IQAIAKAIR 230 + + A++ Sbjct: 224 TELVRYALQ 232 >gi|325971988|ref|YP_004248179.1| LuxR family transcriptional regulator [Spirochaeta sp. Buddy] gi|324027226|gb|ADY13985.1| two component transcriptional regulator, LuxR family [Spirochaeta sp. Buddy] Length = 218 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 17/35 (48%), Positives = 22/35 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 L+ RE L+L G G+ EIA+ L LSV T+N Y Sbjct: 155 LSIREMEVLRLLGQGFGVSEIAQNLNLSVKTINVY 189 >gi|313903315|ref|ZP_07836707.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313466403|gb|EFR61925.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 256 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 30/55 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT R+ LQL G ++ EIA +L LS TV + +L +R+QA+ +A Sbjct: 190 LTPRQVEVLQLLARGVSNREIAARLHLSEGTVKNLVSEIYARLQVRDRVQAVLRA 244 >gi|296394121|ref|YP_003659005.1| LuxR family two component transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181268|gb|ADG98174.1| two component transcriptional regulator, LuxR family [Segniliparus rotundus DSM 44985] Length = 213 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTE+E L L G+G T+ +IA+++ L+ TV Y+ KL R QA A+ G Sbjct: 146 GLTEQERVLLDLIGEGLTNRQIAQRMFLAEKTVRNYVSRLLGKLGVERRTQAAVIAVSGG 205 >gi|229074417|ref|ZP_04207449.1| DNA-binding response regulator [Bacillus cereus Rock4-18] gi|229095286|ref|ZP_04226278.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|229101393|ref|ZP_04232137.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228682098|gb|EEL36231.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228688145|gb|EEL42031.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228708701|gb|EEL60842.1| DNA-binding response regulator [Bacillus cereus Rock4-18] Length = 213 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 142 KLESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAV 201 Query: 226 AKAIR 230 A+R Sbjct: 202 IYAVR 206 >gi|218548322|ref|YP_002382113.1| transcriptional regulator RcsB [Escherichia fergusonii ATCC 35469] gi|218355863|emb|CAQ88478.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia fergusonii ATCC 35469] gi|324112760|gb|EGC06736.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] gi|325496737|gb|EGC94596.1| transcriptional regulator RcsB [Escherichia fergusonii ECD227] Length = 216 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|205374386|ref|ZP_03227184.1| spore germination protein E [Bacillus coahuilensis m4-4] Length = 74 Score = 35.8 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L T++EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTRREREVFELLVQDKTTKEIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|196229810|ref|ZP_03128674.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226136|gb|EDY20642.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 223 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 29/58 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L +RE QL G GY EIAE+L L T++ Y KL N + ++A ++ Sbjct: 160 LADRELEVFQLIGRGYNGREIAEQLHLGETTIDTYRARIKEKLQLRNAAELYSRAAQW 217 >gi|159899284|ref|YP_001545531.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892323|gb|ABX05403.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 77 Score = 35.8 bits (81), Expect = 4.3, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 27/46 (58%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 T RE +L+ +GY+ +EIA +L LS T+ YL + K+D N Sbjct: 9 TTRELEIAELSINGYSCDEIALQLSLSPATIRTYLRNIYAKMDVSN 54 >gi|6094276|sp|P56644|SGAR_HYPME RecName: Full=Probable transcriptional regulatory protein sgaR Length = 211 Score = 35.8 bits (81), Expect = 4.3, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 3/97 (3%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G+V T E +L V+ A G ++ ++++ +LT RE L +G+ Sbjct: 107 GFVAKTEEPQVLLEAVVSVARG---RLSLPYVDIDLLNHDPLESLTARERELLAALANGW 163 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 T+ +IA + G+S +TV +L + KL NR A+A Sbjct: 164 TNLQIAARTGISRNTVKYHLKNLYDKLGVSNRAMAVA 200 >gi|326331183|ref|ZP_08197479.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325951078|gb|EGD43122.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 220 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 30/57 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 S + LT +E L L G+G T+ EIA ++ L+ TV Y+ S KL R QA Sbjct: 150 SPQMQALTPQEKRLLALIGEGLTNREIAGRMFLAEKTVKNYVSSILAKLGVQRRTQA 206 >gi|317482156|ref|ZP_07941179.1| luxR family Bacterial regulatory protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916390|gb|EFV37789.1| luxR family Bacterial regulatory protein [Bifidobacterium sp. 12_1_47BFAA] Length = 232 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + Sbjct: 170 RLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTE 220 >gi|317495848|ref|ZP_07954211.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|329770292|ref|ZP_08261679.1| hypothetical protein HMPREF0433_01443 [Gemella sanguinis M325] gi|316914025|gb|EFV35508.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|328836814|gb|EGF86463.1| hypothetical protein HMPREF0433_01443 [Gemella sanguinis M325] Length = 205 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 6/84 (7%) Query: 129 NGYVIFTS--EFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQL 184 +GYV ++ E ++ A +V++E + + T F EL+K + L+ERE + Sbjct: 98 SGYVTKSTAHEEILKAIDVVMEKNEIYLNEKYATIFYELYK--ADKEIELSEREKEVGKY 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAY 208 +GYT +I EKL LSV TV+ Y Sbjct: 156 IVEGYTLTDIGEKLFLSVKTVDTY 179 >gi|282864949|ref|ZP_06274003.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560374|gb|EFB65922.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 224 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Query: 155 QVITDFLELFKKRS-SAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ +++E + R +AAR LT RE L L G ++E+IA L + V TV ++L Sbjct: 134 RIVAEYVERRRLRPVTAARGIDILTAREREILLLLAQGMSNEQIAGALVVEVATVKSHLA 193 Query: 211 SATVKLDAVNRIQA 224 KL +R+QA Sbjct: 194 RLLPKLGVQSRLQA 207 >gi|229818904|ref|YP_002880430.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564817|gb|ACQ78668.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 218 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 28/50 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L L G T+ EIA +L + + TV ++ S KL A NR++ Sbjct: 155 LTGREEEVLALVARGRTNAEIATELFVGLSTVKTHVASLMTKLGARNRVE 204 >gi|220914287|ref|YP_002489596.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219861165|gb|ACL41507.1| transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 893 Score = 35.8 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 20/48 (41%), Positives = 27/48 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+ RE L G +S E A +LG+SV+TVNA+L KL +R Sbjct: 831 LSNREREVAGLIASGLSSAEAAVRLGISVNTVNAHLQRTYGKLGVSSR 878 >gi|297200760|ref|ZP_06918157.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|197712330|gb|EDY56364.1| transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 332 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 29/56 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L +G S +A ++ LS HTV +L S K NR+ +A+A+ Sbjct: 275 LSPREADVLHHLANGGDSHTVAHRMSLSAHTVQDHLKSIFTKTSTNNRVMLLARAL 330 >gi|75908471|ref|YP_322767.1| LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75702196|gb|ABA21872.1| Transcriptional Regulator with GAF sensor, LuxR family [Anabaena variabilis ATCC 29413] Length = 224 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +SS LT RE +L G T+ EIAEKL ++ ++V L KL R + +A Sbjct: 156 KSSTTNPLTPRELQIAELVAQGLTNAEIAEKLWITQNSVKQALKRMFRKLGVSARAEMVA 215 Query: 227 K 227 + Sbjct: 216 R 216 >gi|29347591|ref|NP_811094.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|253572052|ref|ZP_04849456.1| transcriptional regulator [Bacteroides sp. 1_1_6] gi|29339492|gb|AAO77288.1| transcriptional regulator [Bacteroides thetaiotaomicron VPI-5482] gi|251838232|gb|EES66319.1| transcriptional regulator [Bacteroides sp. 1_1_6] Length = 257 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 168 SSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S RN L+ERE L+ G +S+EIA L +SV+TVN + + KL N I+A Sbjct: 190 SEEHRNILSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACR 249 Query: 227 KA 228 A Sbjct: 250 AA 251 >gi|54023132|ref|YP_117374.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54014640|dbj|BAD56010.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 863 Score = 35.8 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 36/69 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R A LT+ E L+ G T +IA LG+S++TV +L KL A +R+ A+ Sbjct: 795 RREIARPALTDTELLVLKQLPTGRTVGQIAADLGVSINTVKTHLRGIYGKLGANSRVGAL 854 Query: 226 AKAIRFGYI 234 A R G + Sbjct: 855 DTARRSGLL 863 >gi|120598578|ref|YP_963152.1| two component LuxR family transcriptional regulator [Shewanella sp. W3-18-1] gi|146293343|ref|YP_001183767.1| two component LuxR family transcriptional regulator [Shewanella putrefaciens CN-32] gi|120558671|gb|ABM24598.1| two component transcriptional regulator, LuxR family [Shewanella sp. W3-18-1] gi|145565033|gb|ABP75968.1| two component transcriptional regulator, LuxR family [Shewanella putrefaciens CN-32] gi|319426643|gb|ADV54717.1| two component transcriptional regulator, LuxR family [Shewanella putrefaciens 200] Length = 220 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K +S +LT ++ LQ+ +G +++IA LG+S T+ A+ + KL NR QA+ Sbjct: 147 KMASKLSDLTPQQYKVLQMFAEGLLNKQIAYDLGVSEATIKAHATAIFRKLGVRNRTQAV 206 >gi|331699942|ref|YP_004336181.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954631|gb|AEA28328.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 221 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L L G ++ EIA+ L L+ TV ++ KL +R QA+ A G Sbjct: 157 LTDRETEVLGLVARGLSNTEIADALVLAEQTVKTHVSRIFGKLGLRDRAQAVVVAYECGL 216 Query: 234 I 234 + Sbjct: 217 V 217 >gi|320663111|gb|EFX30424.1| transcriptional regulator RcsB [Escherichia coli O55:H7 str. USDA 5905] Length = 216 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|304397142|ref|ZP_07379021.1| transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304355291|gb|EFM19659.1| transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 240 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + ++RE L+ G+G T+ EI+ L +S HTVN + + + + N+ Q A Sbjct: 178 KEFSQRELEILKWTGEGKTAVEISLILSISEHTVNFHQKNMQKRFNVSNKTQIACYAAAI 237 Query: 232 GYI 234 G I Sbjct: 238 GLI 240 >gi|296168206|ref|ZP_06850198.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896822|gb|EFG76452.1| LuxR family transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 1102 Score = 35.8 bits (81), Expect = 4.4, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 33/58 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT E ++L G+G +++IA +L +S TV ++L KL +R+Q +A R Sbjct: 1044 SLTPTELDVVRLVGEGLPNKDIAARLFISPRTVQSHLTHVYTKLAVSSRVQLAREAAR 1101 >gi|291303127|ref|YP_003514405.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572347|gb|ADD45312.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 341 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 34/74 (45%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L +F + L E L + G E IA +LG+S TV+ + +L A N Sbjct: 266 LPIFDPVGATHGPLDPEERELLGMLASGVKDEAIARRLGISNRTVSRRVNRLLERLGAAN 325 Query: 221 RIQAIAKAIRFGYI 234 R QA +A R G++ Sbjct: 326 RFQAGLQAARQGWL 339 >gi|284008814|emb|CBA75576.1| quorum-sensing transcriptional activator [Arsenophonus nasoniae] Length = 257 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 30/62 (48%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ +S + RE L A G T EIA LG+ + TV ++GS KL +N Sbjct: 182 YQNPASGKECFSPRENEILYWASMGKTYSEIATILGIKLGTVKFHIGSVVKKLGVMNAKH 241 Query: 224 AI 225 AI Sbjct: 242 AI 243 >gi|290955569|ref|YP_003486751.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260645095|emb|CBG68181.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T RE L L G ++ +IA +L + TV ++ + KLDA R+QA A R G Sbjct: 151 EVTRRERDVLALLGRAMSNTQIAHRLHIEESTVKYHVQNLLTKLDARTRVQAALIASRAG 210 Query: 233 YI 234 + Sbjct: 211 MV 212 >gi|256786833|ref|ZP_05525264.1| regulatory protein [Streptomyces lividans TK24] Length = 349 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ RE S L +G+ IAE+LG+SV T A++ + L A +R Q Sbjct: 267 GISHREQSIAALLAEGHQDAVIAERLGISVRTARAHIARLSETLGAASRTQ 317 >gi|253998442|ref|YP_003050505.1| two component LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|313200518|ref|YP_004039176.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|253985121|gb|ACT49978.1| two component transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] gi|312439834|gb|ADQ83940.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 214 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 46/112 (41%), Gaps = 8/112 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTERETSCL 182 GYV T F L V+ A G Y Q I L+ L+ RE Sbjct: 103 RGYVAKTGSFDELVKAVVEVARGKSYISTSIAQKIA--LQTVIGDGDLISQLSPREFEVF 160 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +G +EEIAE L +S TV Y KL N ++ + AI+ G I Sbjct: 161 RLFAEGKNAEEIAEVLKISQKTVANYHTLVKQKLGLSNPVEMVRFAIKHGLI 212 >gi|262201684|ref|YP_003272892.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085031|gb|ACY20999.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 231 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 11/104 (10%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR--------NLTER 177 GYV T LA+ V A G ++ L+ F +SSA +LT R Sbjct: 115 RGYVTKTISGADLADAVRRVADGDAVFSPRLAGFVLDSFTGKSSAPEPPLDPELDSLTRR 174 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E L+L GYT EIAE+L +S+ TV + + K NR Sbjct: 175 ELEVLRLLARGYTYREIAEELFISIKTVETHASNVLRKTQQSNR 218 >gi|229819087|ref|YP_002880613.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565000|gb|ACQ78851.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 204 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L A + ++A +L LS TV YL + T KL A +R A A G+ Sbjct: 144 LTPRETEVLAAAREDRPIRDVAGQLFLSPGTVRNYLAAVTAKLAASSRADAYRTARENGW 203 Query: 234 I 234 I Sbjct: 204 I 204 >gi|226366304|ref|YP_002784087.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226244794|dbj|BAH55142.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 530 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 35/69 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R+ LT+RE L+L G +++EIA +L ++ T ++ KL NR QA Sbjct: 452 RRTPWPAGLTDREVEILRLVAQGRSNKEIAAELFIAEKTARNHVERVYAKLGVNNRTQAG 511 Query: 226 AKAIRFGYI 234 AI G + Sbjct: 512 LAAIDRGLV 520 >gi|225862611|ref|YP_002747989.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102] gi|225789899|gb|ACO30116.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102] Length = 213 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 142 KVESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAV 201 Query: 226 AKAIR 230 A+R Sbjct: 202 IYAVR 206 >gi|222149565|ref|YP_002550522.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736547|gb|ACM37510.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 312 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 29/56 (51%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +R A LT+RE+ L G + +I E LGL+ TVN +L VKL NR Sbjct: 243 ERLRQAFGLTQRESEVLLWIARGKPNRDIGEILGLAARTVNKHLEQIYVKLGVENR 298 >gi|223934475|ref|ZP_03626396.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896938|gb|EEF63378.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 231 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ ++LTERE L L G+ +EIA+ L +S TV ++ + KL +R +A Sbjct: 167 RAPEIKSLTEREEQVLALLSKGHAYKEIADLLNISFETVRTHVRTIYDKLHVHSRTEATL 226 Query: 227 K 227 K Sbjct: 227 K 227 >gi|167034248|ref|YP_001669479.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166860736|gb|ABY99143.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 280 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 160 FLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 F + ++R AA N LTERE QL G++++ +AE+LG+S T+ ++ + Sbjct: 182 FENILEQRIHAALNNFGSSLLTERECRIAQLILRGHSTKSLAERLGVSEDTIKSHRKNVY 241 Query: 214 VKLD 217 KLD Sbjct: 242 AKLD 245 >gi|153808394|ref|ZP_01961062.1| hypothetical protein BACCAC_02688 [Bacteroides caccae ATCC 43185] gi|149129297|gb|EDM20513.1| hypothetical protein BACCAC_02688 [Bacteroides caccae ATCC 43185] Length = 262 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ R+ L L G S++IA+ L +SV+TVN + L N A+ A+R Sbjct: 202 LSRRQLEILSLIAKGVPSKQIADNLNISVYTVNRHRQDILASLKVANTAAAVEIALRMNL 261 Query: 234 I 234 I Sbjct: 262 I 262 >gi|315645417|ref|ZP_07898541.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Paenibacillus vortex V453] gi|315278895|gb|EFU42205.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Paenibacillus vortex V453] Length = 873 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 35/74 (47%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 V D + +S+ L E + L+L G ++++A LGLS T+ YL Sbjct: 792 HVKADPPHITSSQSALPEQLNRNEKNLLRLIMQGAANKQMAAALGLSEGTIRVYLSRLYD 851 Query: 215 KLDAVNRIQAIAKA 228 KL +R QA+ +A Sbjct: 852 KLGVTSRTQALVRA 865 >gi|284050625|ref|ZP_06380835.1| two component transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] gi|291567571|dbj|BAI89843.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 208 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 5/90 (5%) Query: 150 HGACY---QVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 GA Y QV +E K + L+ RE L+L +G ++ EIAE L LS +T Sbjct: 119 EGATYLDPQVARVVMEHLKPPTPQTNLGTLSPRELEVLKLMVEGKSNPEIAEALYLSPNT 178 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + ++ KL +R+ A+R G + Sbjct: 179 IKTHVRGIMNKLAVDDRVMVAVVALRSGLV 208 >gi|262403119|ref|ZP_06079679.1| transcriptional regulator LuxR family [Vibrio sp. RC586] gi|262350618|gb|EEY99751.1| transcriptional regulator LuxR family [Vibrio sp. RC586] Length = 237 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Query: 141 LANEVIIE-AHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKL 198 L + I+E H C FK + AA LT RE+ L L G + IA + Sbjct: 121 LTDTAILEVGHWVCRATGLSNTTPFKSAADRAALKLTARESEVLFLLLYGKKPQHIARVM 180 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G+S+ TV Y K A+++ Q I A+ G+ Sbjct: 181 GISIKTVEGYEAKLRSKFGALSKDQLIDLALDHGF 215 >gi|317054305|ref|YP_004118330.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pantoea sp. At-9b] gi|316952300|gb|ADU71774.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pantoea sp. At-9b] Length = 900 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L GY++E+IA +L ++ T+ ++ + KL +R QA+ +A Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELDIAATTIKTHIRNLYQKLGVSHRSQAVNQA 890 >gi|253687501|ref|YP_003016691.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754079|gb|ACT12155.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 216 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA KL Sbjct: 134 VSKVLEKISASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMTKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|116621801|ref|YP_823957.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224963|gb|ABJ83672.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 225 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+L G +++EIA+ L ++ TV ++ +LD +R QA+ A++ G Sbjct: 163 LSPREMDILRLIVRGLSNQEIADALNITRGTVKWHVNIILRRLDVNDRTQAVVVAVQRGI 222 Query: 234 IC 235 + Sbjct: 223 VV 224 >gi|78185674|ref|YP_378108.1| two component LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78169968|gb|ABB27065.1| two component transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 245 Score = 35.8 bits (81), Expect = 4.4, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 25/48 (52%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 E + A + T RE S LQL +G ++EIA +L S+ V Y+ Sbjct: 172 EALPSKDPVAHSFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYV 219 >gi|302337733|ref|YP_003802939.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634918|gb|ADK80345.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 217 Score = 35.8 bits (81), Expect = 4.5, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 25/44 (56%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++R L++RE L+ G GY + EI+ L LSV TVN Y Sbjct: 145 EERDDLVNLLSDREFEVLEYIGQGYGASEISRILNLSVKTVNTY 188 >gi|242238487|ref|YP_002986668.1| transcriptional regulator RcsB [Dickeya dadantii Ech703] gi|242130544|gb|ACS84846.1| two component transcriptional regulator, LuxR family [Dickeya dadantii Ech703] Length = 218 Score = 35.8 bits (81), Expect = 4.5, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA KL Sbjct: 134 VSKVLEKISASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMTKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|239983191|ref|ZP_04705715.1| two component LuxR family transcriptional regulator [Streptomyces albus J1074] Length = 326 Score = 35.8 bits (81), Expect = 4.5, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L G T+++I+ +L LS TV ++ KLD NR+ A+ Sbjct: 184 LTPREMQVFRLVSQGLTNQQISNRLVLSEATVKSHFNRICHKLDLRNRVDAV 235 >gi|196232090|ref|ZP_03130945.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196223812|gb|EDY18327.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 213 Score = 35.8 bits (81), Expect = 4.5, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE ++L G +++EI LG++ T ++ K+ ++R QA+ +A+R G Sbjct: 147 LTPRELEVIRLLARGCSNKEIGMALGIAEITAKIHVSHLLSKMGVLDRSQAVMEALRHGI 206 Query: 234 I 234 I Sbjct: 207 I 207 >gi|157376272|ref|YP_001474872.1| two component LuxR family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157318646|gb|ABV37744.1| two component transcriptional regulator, LuxR family [Shewanella sediminis HAW-EB3] Length = 220 Score = 35.8 bits (81), Expect = 4.5, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 SS +L+ R+ L + DG +++IA LGLS T+ A+ + +KL R QA+ Sbjct: 145 SSKIMSLSPRQHRILMMFADGMLNKQIAYDLGLSEATIKAHASAIFLKLGVHTRTQAV 202 >gi|66045814|ref|YP_235655.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63256521|gb|AAY37617.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|330973829|gb|EGH73895.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 226 Score = 35.8 bits (81), Expect = 4.5, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Query: 173 NLTERETS-CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+ERET CL L G+T+ E AE+L L V+TV +Y A +KL R Sbjct: 160 TLSERETQVCLGLLA-GHTALEQAERLALKVNTVGSYQRRAAIKLGISGR 208 >gi|56964425|ref|YP_176156.1| transcriptional regulator of spore coat protein [Bacillus clausii KSM-K16] gi|56910668|dbj|BAD65195.1| transcriptional regulator of spore coat protein [Bacillus clausii KSM-K16] Length = 74 Score = 35.8 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA L +S TV ++ + KL R QA+ + IR G Sbjct: 12 LTKREREVFELLVQDQTTKEIANHLFISEKTVRNHISNTMQKLGVKGRSQAVIELIRLG 70 >gi|313499334|gb|ADR60700.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 280 Score = 35.8 bits (81), Expect = 4.5, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 160 FLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 F + ++R AA N LTERE QL G++++ +AE+LG+S T+ ++ + Sbjct: 182 FENILEQRIHAALNNFGSSLLTERECRIAQLILRGHSTKSLAERLGVSEDTIKSHRKNVY 241 Query: 214 VKLD 217 KLD Sbjct: 242 AKLD 245 >gi|311278814|ref|YP_003941045.1| two component transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308748009|gb|ADO47761.1| two component transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 216 Score = 35.8 bits (81), Expect = 4.5, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|296160668|ref|ZP_06843483.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295889194|gb|EFG68997.1| two component transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 292 Score = 35.8 bits (81), Expect = 4.5, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +R+ A L+ R+ ++ G T++ IA LG+S TV +L S +L A NR A Sbjct: 149 PRRTKLANGLSPRQQQIMRCVHMGSTNKMIARTLGISEGTVKIHLTSIFQQLGAPNRAAA 208 Query: 225 IA 226 +A Sbjct: 209 VA 210 >gi|289772962|ref|ZP_06532340.1| multidomain-containing protein family [Streptomyces lividans TK24] gi|289703161|gb|EFD70590.1| multidomain-containing protein family [Streptomyces lividans TK24] Length = 780 Score = 35.8 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 28/53 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE L G+G T+ +IAE+L +S T + ++ KL +R Q A Sbjct: 718 LTPREREVADLIGEGLTNRQIAERLVISKRTADTHVEHILTKLGVTSRTQIAA 770 >gi|261251991|ref|ZP_05944565.1| transcriptional activator of maltose regulon MalT [Vibrio orientalis CIP 102891] gi|260938864|gb|EEX94852.1| transcriptional activator of maltose regulon MalT [Vibrio orientalis CIP 102891] Length = 902 Score = 35.8 bits (81), Expect = 4.5, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAVKTA 893 >gi|260430667|ref|ZP_05784639.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157] gi|260418108|gb|EEX11366.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157] Length = 204 Score = 35.8 bits (81), Expect = 4.5, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A+ LTERE L+ +G +++EIA L LS T+ ++ + K+ NR QA A Sbjct: 141 AKKLTERERQVLKGLTEGKSNKEIARDLDLSEPTIKLHVKTLYRKVGVSNRTQAAMAARE 200 Query: 231 FG 232 G Sbjct: 201 AG 202 >gi|256789068|ref|ZP_05527499.1| multidomain-containing protein family [Streptomyces lividans TK24] Length = 772 Score = 35.8 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 28/53 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE L G+G T+ +IAE+L +S T + ++ KL +R Q A Sbjct: 710 LTPREREVADLIGEGLTNRQIAERLVISKRTADTHVEHILTKLGVTSRTQIAA 762 >gi|212690554|ref|ZP_03298682.1| hypothetical protein BACDOR_00039 [Bacteroides dorei DSM 17855] gi|212666903|gb|EEB27475.1| hypothetical protein BACDOR_00039 [Bacteroides dorei DSM 17855] Length = 231 Score = 35.8 bits (81), Expect = 4.5, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 9/172 (5%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D PN ++ D LF ++ L I+ + +E I S LS ++ F G +F V Sbjct: 62 DHPNAVVVL--DYTLFDTSAEYLLILQERFKEAHFILFSDSLSEDFIRRMV-FGGTSFSV 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 + K+ +I E L A + + C ++ +K+ +LT E L Sbjct: 119 VM---KDAPMIEIEEGLRKAEQRL---QYICTRIAWQLQHKEEKKEKRGSSLTVTECEIL 172 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G T++EIA + LSV+TV + + KL+ N +A A+R G + Sbjct: 173 KLMALGKTTKEIAAERFLSVYTVMTHRKNIFRKLEVNNVYEATKYALRAGIV 224 >gi|118443997|ref|YP_877397.1| response regulator [Clostridium novyi NT] gi|118134453|gb|ABK61497.1| Response regulator (CheY-like recever domain and HTH) [Clostridium novyi NT] Length = 209 Score = 35.8 bits (81), Expect = 4.5, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE L L G G +++EI++K+ LS T+ Y+ + KL +R Q Sbjct: 151 LTERELEILALIGQGLSNKEISKKVYLSEGTIRNYITNLLQKLQLRDRTQ 200 >gi|24380308|ref|NP_722263.1| putative response regulator [Streptococcus mutans UA159] gi|290579719|ref|YP_003484111.1| putative response regulator [Streptococcus mutans NN2025] gi|24378323|gb|AAN59569.1|AE015020_4 putative response regulator [Streptococcus mutans UA159] gi|254996618|dbj|BAH87219.1| putative response regulator [Streptococcus mutans NN2025] Length = 226 Score = 35.8 bits (81), Expect = 4.5, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 37/66 (56%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + ++ N+++ E +Q G G +++EIA KL LS T+ YL + KL+ +R Q Sbjct: 150 QGNSVENISKAEWKIIQQIGFGLSNKEIAAKLFLSEGTIRNYLSTILSKLNLRDRTQLAI 209 Query: 227 KAIRFG 232 A++ G Sbjct: 210 WAVQTG 215 >gi|21219837|ref|NP_625616.1| multidomain-containing protein family [Streptomyces coelicolor A3(2)] gi|8977921|emb|CAB95788.1| putative multi-domain regulatory protein [Streptomyces coelicolor A3(2)] Length = 780 Score = 35.8 bits (81), Expect = 4.5, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 28/53 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE L G+G T+ +IAE+L +S T + ++ KL +R Q A Sbjct: 718 LTPREREVADLIGEGLTNRQIAERLVISKRTADTHVEHILTKLGVTSRTQIAA 770 >gi|116049068|ref|YP_792130.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115584289|gb|ABJ10304.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 243 Score = 35.8 bits (81), Expect = 4.5, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 14/156 (8%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFA---GIAFPVRLGFHKNGY---VIFTSEFL 139 P W + E +++ R+ G+ G+ PV F +NG V F E L Sbjct: 93 PFFWS----KNPSEDPARMTYRIVRGVRDLGQVNGMQVPV---FGRNGLEGAVSFAGERL 145 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKL 198 L + A C + L S+ A+ L+ERE LQ G E+A L Sbjct: 146 DLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSEREREVLQWIALGKQQAEVAAIL 205 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV +L +A +L A + QA+A+A+R G I Sbjct: 206 MISERTVENHLRAARRRLGAASTAQAVARALRLGDI 241 >gi|325961668|ref|YP_004239574.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323467755|gb|ADX71440.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 416 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 1/84 (1%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 ++ GA V+ + + AA NL ERE LQL G + IA KL +S +T Sbjct: 327 VMPGWGADVAVVIPLDPPARPLAEAADWNLGERELEVLQLLAAGQRNRSIAAKLHISENT 386 Query: 205 VNAYLGSATVKLDAVNRIQAIAKA 228 V +L + K+ A +R +A+A A Sbjct: 387 VKFHLRNLYRKIGASSRTEAMALA 410 >gi|256392692|ref|YP_003114256.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256358918|gb|ACU72415.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 213 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 37/61 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G +++EIA +L +S H V ++G+ KL+ NR A+A ++ G Sbjct: 150 LTPRELEVLELLVEGLSNKEIARRLSMSEHGVKRHVGAVLAKLNCPNRTVAVAFVLQKGL 209 Query: 234 I 234 + Sbjct: 210 M 210 >gi|284989855|ref|YP_003408409.1| LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063100|gb|ADB74038.1| transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 910 Score = 35.8 bits (81), Expect = 4.6, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 6/108 (5%) Query: 123 RLGFHKNGYVIFTS---EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 R+G ++ + T+ F L +V +E C + + + NLTE+E Sbjct: 798 RVGRRRDAAALLTTARQSFAALGAQVYVER---CDRELKTGRPAPRAAEPGTENLTEQER 854 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L G T++E+A + LSV TV +L KL +R + A+ Sbjct: 855 TVATLVATGLTNKEVAASMLLSVKTVQFHLTRIYAKLGVRSRSELAAR 902 >gi|212636250|ref|YP_002312775.1| LuxR family DNA-binding response regulator [Shewanella piezotolerans WP3] gi|212557734|gb|ACJ30188.1| DNA-binding response regulator, LuxR family [Shewanella piezotolerans WP3] Length = 216 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +S +L+ R+ S L + DG +++IA +LGLS T+ A+ + +KL R QA+ Sbjct: 144 TSKIVSLSPRQHSILMMFADGLLNKQIAYELGLSEATIKAHASAIFLKLGVHTRTQAV 201 >gi|254390125|ref|ZP_05005345.1| two component response regulator MppU [Streptomyces clavuligerus ATCC 27064] gi|294817119|ref|ZP_06775761.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326445989|ref|ZP_08220723.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197703832|gb|EDY49644.1| two component response regulator MppU [Streptomyces clavuligerus ATCC 27064] gi|294321934|gb|EFG04069.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 209 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 26/49 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LT RE +L DG T+ EI E L +S T ++ + KL A NR+ Sbjct: 151 LTAREEEIARLVADGLTNAEIGEALVISPGTAKTHVANVQTKLGARNRV 199 >gi|190576409|ref|YP_001974254.1| putative two component system response regulator [Stenotrophomonas maltophilia K279a] gi|190014331|emb|CAQ47978.1| putative two component system response regulator [Stenotrophomonas maltophilia K279a] Length = 221 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT ++ LQ+ G G +++IA L +S T+ A++ + KL NR QA+ A Sbjct: 148 RELTPQQFRVLQMLGAGRLNKQIAYDLSVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|219847184|ref|YP_002461617.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541443|gb|ACL23181.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 219 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 29/68 (42%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R LTERE L L G T EIA+ L V V + KL NR A+A Sbjct: 141 RQRTYEPLTERERQILTLMAQGLTESEIADHLCWGVGVVKRDSRAIFDKLQVRNRAHAVA 200 Query: 227 KAIRFGYI 234 +A G + Sbjct: 201 RAYDLGIL 208 >gi|50120142|ref|YP_049309.1| transcriptional regulator RcsB [Pectobacterium atrosepticum SCRI1043] gi|49610668|emb|CAG74113.1| two-component response regulator [Pectobacterium atrosepticum SCRI1043] Length = 214 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA KL Sbjct: 134 VSKVLEKISASGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMTKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|16765597|ref|NP_461212.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56412833|ref|YP_149908.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161502575|ref|YP_001569687.1| transcriptional regulator RcsB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|167549740|ref|ZP_02343499.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992600|ref|ZP_02573697.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229630|ref|ZP_02654688.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237283|ref|ZP_02662341.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242382|ref|ZP_02667314.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261720|ref|ZP_02683693.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466037|ref|ZP_02699907.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818005|ref|ZP_02830005.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446271|ref|YP_002041531.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451449|ref|YP_002046324.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194733999|ref|YP_002115342.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197251808|ref|YP_002147226.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197265209|ref|ZP_03165283.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361766|ref|YP_002141402.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198244297|ref|YP_002216339.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388109|ref|ZP_03214721.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929103|ref|ZP_03220246.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207857689|ref|YP_002244340.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224583245|ref|YP_002637043.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913909|ref|ZP_04657746.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|283786030|ref|YP_003365895.1| regulator of capsule synthesis (two-component system response regulator) [Citrobacter rodentium ICC168] gi|20139413|sp|P58663|RCSB_SALTY RecName: Full=Capsular synthesis regulator component B gi|16420808|gb|AAL21171.1| LuxR/UhpA family response regulator in two-component regulatory system with RcsC [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56127090|gb|AAV76596.1| regulator of capsule synthesis B component [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|160863922|gb|ABX20545.1| hypothetical protein SARI_00619 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|194404934|gb|ACF65156.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194409753|gb|ACF69972.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194709501|gb|ACF88722.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631418|gb|EDX49978.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093242|emb|CAR58687.1| regulator of capsule synthesis B component [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197215511|gb|ACH52908.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197243464|gb|EDY26084.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289704|gb|EDY29067.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197938813|gb|ACH76146.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605207|gb|EDZ03752.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321647|gb|EDZ06846.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325384|gb|EDZ13223.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329172|gb|EDZ15936.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335727|gb|EDZ22491.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338526|gb|EDZ25290.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205345162|gb|EDZ31926.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349408|gb|EDZ36039.1| capsular synthesis regulator component B [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709492|emb|CAR33836.1| regulator of capsule synthesis B component [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467772|gb|ACN45602.1| regulator of capsule synthesis B component [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|229918796|gb|ACQ91082.1| RcsB [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|261247478|emb|CBG25305.1| regulator of capsule synthesis B component [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994356|gb|ACY89241.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|282949484|emb|CBG89097.1| regulator of capsule synthesis (two-component system response regulator) [Citrobacter rodentium ICC168] gi|301158828|emb|CBW18341.1| regulator of capsule synthesis B component [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913260|dbj|BAJ37234.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086706|emb|CBY96477.1| Response regulator gacA Global activator [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223030|gb|EFX48101.1| DNA-binding capsular synthesis response regulator RcsB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617022|gb|EFY13928.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617672|gb|EFY14571.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624698|gb|EFY21527.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630247|gb|EFY27017.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634428|gb|EFY31161.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639138|gb|EFY35830.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640135|gb|EFY36801.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645777|gb|EFY42301.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651552|gb|EFY47927.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656113|gb|EFY52412.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659465|gb|EFY55712.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665927|gb|EFY62110.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669835|gb|EFY65976.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673820|gb|EFY69917.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678578|gb|EFY74634.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683626|gb|EFY79640.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687702|gb|EFY83672.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323196201|gb|EFZ81358.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198369|gb|EFZ83471.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204193|gb|EFZ89204.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208579|gb|EFZ93518.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212346|gb|EFZ97169.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218248|gb|EGA02958.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222994|gb|EGA07343.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227429|gb|EGA11594.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232243|gb|EGA16346.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235724|gb|EGA19808.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241116|gb|EGA25152.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244858|gb|EGA28860.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248569|gb|EGA32500.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251589|gb|EGA35457.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255021|gb|EGA38811.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263084|gb|EGA46630.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268144|gb|EGA51621.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270763|gb|EGA54201.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624089|gb|EGE30434.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332989203|gb|AEF08186.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 216 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|86143242|ref|ZP_01061644.1| hypothetical protein MED217_08670 [Leeuwenhoekiella blandensis MED217] gi|85830147|gb|EAQ48607.1| hypothetical protein MED217_08670 [Leeuwenhoekiella blandensis MED217] Length = 231 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 144 EVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 EV+ + H V T L K+ S N + RE ++LA T +EIA ++ LS Sbjct: 137 EVLTKGHFYTDNVTTALLRGVSKKDEESLLENFSSRELEFMELACSDKTYKEIANEMCLS 196 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T++ Y + KL+ +RI + A++ Sbjct: 197 PKTIDNYRDTLFKKLEVKSRIGLVLYALK 225 >gi|254234270|ref|ZP_04927593.1| hypothetical protein PACG_00108 [Pseudomonas aeruginosa C3719] gi|126166201|gb|EAZ51712.1| hypothetical protein PACG_00108 [Pseudomonas aeruginosa C3719] Length = 243 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 117 GIAFPVRLGFHKNGY---VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-AR 172 G+ PV F +NG V F E L L + A C + L S+ A+ Sbjct: 123 GMQVPV---FGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQ 179 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE LQ G E+A L +S TV +L +A +L A + QA+A+A+R G Sbjct: 180 ALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239 Query: 233 YI 234 I Sbjct: 240 DI 241 >gi|124266442|ref|YP_001020446.1| response regulator [Methylibium petroleiphilum PM1] gi|124259217|gb|ABM94211.1| response regulator [Methylibium petroleiphilum PM1] Length = 245 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L G+T +EIA +G+ TVN ++ + KL+ +R +A A + G Sbjct: 184 RLTPRETEVLTYLSKGFTIKEIAGLMGIKWFTVNDHIKAIYRKLNVSSRAEAAVLASKQG 243 Query: 233 YI 234 + Sbjct: 244 LV 245 >gi|291457263|ref|ZP_06596653.1| two-component system response regulator [Bifidobacterium breve DSM 20213] gi|291381098|gb|EFE88616.1| two-component system response regulator [Bifidobacterium breve DSM 20213] Length = 227 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + Sbjct: 166 RLSAREQEVMRLIARGYTYKEVAVELFISIKTVETHVSSVLRKLQLSNRTE 216 >gi|15077445|gb|AAK83172.1|AF333038_14 putative two-component regulator [Streptomyces viridochromogenes] Length = 206 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L++RE L GY++ EIA LG++ TV A++ KL +R+QA Sbjct: 127 LSDRELQVFLLLSHGYSNREIAALLGVTERTVKAHMAQILAKLGVESRLQA 177 >gi|108804387|ref|YP_644324.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108765630|gb|ABG04512.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 220 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+L G ++ EIA L ++ TV ++ S KL +R QA A+ G Sbjct: 156 GLSEREMEVLRLVASGASNREIARALYITEGTVKNHISSILRKLGFRDRTQAALYALERG 215 Query: 233 YI 234 +I Sbjct: 216 WI 217 >gi|15832360|ref|NP_311133.1| transcriptional regulator RcsB [Escherichia coli O157:H7 str. Sakai] gi|16130154|ref|NP_416721.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli str. K-12 substr. MG1655] gi|30063656|ref|NP_837827.1| transcriptional regulator RcsB [Shigella flexneri 2a str. 2457T] gi|56480067|ref|NP_708112.2| transcriptional regulator RcsB [Shigella flexneri 2a str. 301] gi|74312739|ref|YP_311158.1| transcriptional regulator RcsB [Shigella sonnei Ss046] gi|82544549|ref|YP_408496.1| transcriptional regulator RcsB [Shigella boydii Sb227] gi|82776177|ref|YP_402526.1| transcriptional regulator RcsB [Shigella dysenteriae Sd197] gi|89109033|ref|AP_002813.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli str. K-12 substr. W3110] gi|110642427|ref|YP_670157.1| transcriptional regulator RcsB [Escherichia coli 536] gi|110806191|ref|YP_689711.1| transcriptional regulator RcsB [Shigella flexneri 5 str. 8401] gi|117624411|ref|YP_853324.1| transcriptional regulator RcsB [Escherichia coli APEC O1] gi|157144826|ref|YP_001452145.1| transcriptional regulator RcsB [Citrobacter koseri ATCC BAA-895] gi|157155457|ref|YP_001463568.1| transcriptional regulator RcsB [Escherichia coli E24377A] gi|168749625|ref|ZP_02774647.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4113] gi|168754969|ref|ZP_02779976.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4401] gi|168761346|ref|ZP_02786353.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4501] gi|168767842|ref|ZP_02792849.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4486] gi|168773060|ref|ZP_02798067.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4196] gi|168780071|ref|ZP_02805078.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4076] gi|168787128|ref|ZP_02812135.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC869] gi|168798387|ref|ZP_02823394.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC508] gi|170019469|ref|YP_001724423.1| transcriptional regulator RcsB [Escherichia coli ATCC 8739] gi|170081837|ref|YP_001731157.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli str. K-12 substr. DH10B] gi|170682257|ref|YP_001744411.1| transcriptional regulator RcsB [Escherichia coli SMS-3-5] gi|191165385|ref|ZP_03027227.1| capsular synthesis regulator component B [Escherichia coli B7A] gi|191169935|ref|ZP_03031489.1| capsular synthesis regulator component B [Escherichia coli F11] gi|193062310|ref|ZP_03043405.1| capsular synthesis regulator component B [Escherichia coli E22] gi|193068258|ref|ZP_03049222.1| capsular synthesis regulator component B [Escherichia coli E110019] gi|194427220|ref|ZP_03059771.1| capsular synthesis regulator component B [Escherichia coli B171] gi|194433368|ref|ZP_03065648.1| capsular synthesis regulator component B [Shigella dysenteriae 1012] gi|194436343|ref|ZP_03068445.1| capsular synthesis regulator component B [Escherichia coli 101-1] gi|195935598|ref|ZP_03080980.1| transcriptional regulator RcsB [Escherichia coli O157:H7 str. EC4024] gi|208806204|ref|ZP_03248541.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4206] gi|208812594|ref|ZP_03253923.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4045] gi|208819912|ref|ZP_03260232.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4042] gi|209399700|ref|YP_002271631.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4115] gi|209919676|ref|YP_002293760.1| transcriptional regulator RcsB [Escherichia coli SE11] gi|215487436|ref|YP_002329867.1| transcriptional regulator RcsB [Escherichia coli O127:H6 str. E2348/69] gi|217327718|ref|ZP_03443801.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. TW14588] gi|218554786|ref|YP_002387699.1| transcriptional regulator RcsB [Escherichia coli IAI1] gi|218559135|ref|YP_002392048.1| transcriptional regulator RcsB [Escherichia coli S88] gi|218690380|ref|YP_002398592.1| transcriptional regulator RcsB [Escherichia coli ED1a] gi|218695830|ref|YP_002403497.1| transcriptional regulator RcsB [Escherichia coli 55989] gi|218700686|ref|YP_002408315.1| transcriptional regulator RcsB [Escherichia coli IAI39] gi|218705747|ref|YP_002413266.1| transcriptional regulator RcsB [Escherichia coli UMN026] gi|227887275|ref|ZP_04005080.1| transcriptional regulator RcsB [Escherichia coli 83972] gi|238901392|ref|YP_002927188.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli BW2952] gi|254794117|ref|YP_003078954.1| transcriptional regulator RcsB [Escherichia coli O157:H7 str. TW14359] gi|256017615|ref|ZP_05431480.1| transcriptional regulator RcsB [Shigella sp. D9] gi|256022100|ref|ZP_05435965.1| transcriptional regulator RcsB [Escherichia sp. 4_1_40B] gi|260844820|ref|YP_003222598.1| DNA-binding response regulator RcsB in two-component regulatory system with RcsC and YojN [Escherichia coli O103:H2 str. 12009] gi|260856205|ref|YP_003230096.1| DNA-binding response regulator RcsB in two-component regulatory system with RcsC and YojN [Escherichia coli O26:H11 str. 11368] gi|260868934|ref|YP_003235336.1| DNA-binding response regulator RcsB in two-component regulatory system with RcsC and YojN [Escherichia coli O111:H- str. 11128] gi|261223324|ref|ZP_05937605.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli O157:H7 str. FRIK2000] gi|261259126|ref|ZP_05951659.1| DNA-binding response regulator RcsB in two-component regulatory system with RcsC and YojN [Escherichia coli O157:H7 str. FRIK966] gi|291283468|ref|YP_003500286.1| Capsular synthesis regulator component B [Escherichia coli O55:H7 str. CB9615] gi|293405684|ref|ZP_06649676.1| transcriptional regulator RcsB [Escherichia coli FVEC1412] gi|293410581|ref|ZP_06654157.1| conserved hypothetical protein [Escherichia coli B354] gi|293415517|ref|ZP_06658160.1| two-component system [Escherichia coli B185] gi|293446567|ref|ZP_06662989.1| two-component system [Escherichia coli B088] gi|298381366|ref|ZP_06990965.1| transcriptional regulator RcsB [Escherichia coli FVEC1302] gi|300818178|ref|ZP_07098390.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300822672|ref|ZP_07102810.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300897717|ref|ZP_07116114.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300903598|ref|ZP_07121517.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300918870|ref|ZP_07135435.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300926328|ref|ZP_07142128.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300931437|ref|ZP_07146766.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300936768|ref|ZP_07151661.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300948911|ref|ZP_07162973.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300958902|ref|ZP_07171006.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300981271|ref|ZP_07175448.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300983210|ref|ZP_07176487.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|301022437|ref|ZP_07186319.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|301024241|ref|ZP_07187936.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|301048965|ref|ZP_07195954.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|301306551|ref|ZP_07212614.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|301328713|ref|ZP_07221766.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|301647693|ref|ZP_07247487.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|306814669|ref|ZP_07448831.1| transcriptional regulator RcsB [Escherichia coli NC101] gi|307138875|ref|ZP_07498231.1| transcriptional regulator RcsB [Escherichia coli H736] gi|307311209|ref|ZP_07590853.1| two component transcriptional regulator, LuxR family [Escherichia coli W] gi|309786604|ref|ZP_07681225.1| capsular synthesis regulator component B [Shigella dysenteriae 1617] gi|309793102|ref|ZP_07687530.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|312967519|ref|ZP_07781734.1| capsular synthesis regulator component B [Escherichia coli 2362-75] gi|312973529|ref|ZP_07787701.1| capsular synthesis regulator component B [Escherichia coli 1827-70] gi|331658297|ref|ZP_08359259.1| capsular synthesis regulator component B [Escherichia coli TA206] gi|331663723|ref|ZP_08364633.1| capsular synthesis regulator component B [Escherichia coli TA143] gi|331668923|ref|ZP_08369771.1| capsular synthesis regulator component B [Escherichia coli TA271] gi|331683894|ref|ZP_08384490.1| capsular synthesis regulator component B [Escherichia coli H299] gi|60393002|sp|P69407|RCSB_ECOLI RecName: Full=Capsular synthesis regulator component B gi|60393003|sp|P69408|RCSB_ECOL6 RecName: Full=Capsular synthesis regulator component B gi|60393004|sp|P69409|RCSB_ECO57 RecName: Full=Capsular synthesis regulator component B gi|60393005|sp|P69410|RCSB_SHIFL RecName: Full=Capsular synthesis regulator component B gi|147529|gb|AAA24506.1| capsule synthesis regulator component B [Escherichia coli] gi|457113|gb|AAA24504.1| capsule synthesis regulator component B [Escherichia coli] gi|1736858|dbj|BAA16000.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli str. K12 substr. W3110] gi|1788546|gb|AAC75277.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli str. K-12 substr. MG1655] gi|13362575|dbj|BAB36529.1| positive response regulator for colanic capsule biosynthesis [Escherichia coli O157:H7 str. Sakai] gi|30041909|gb|AAP17636.1| positive response regulator for colanic capsule biosynthesis, (sensor, RcsC) [Shigella flexneri 2a str. 2457T] gi|56383618|gb|AAN43819.2| positive response regulator for colanic capsule biosynthesis, (sensor, RcsC) [Shigella flexneri 2a str. 301] gi|73856216|gb|AAZ88923.1| positive response regulator for colanic capsule biosynthesis [Shigella sonnei Ss046] gi|81240325|gb|ABB61035.1| positive response regulator for colanic capsule biosynthesis [Shigella dysenteriae Sd197] gi|81245960|gb|ABB66668.1| positive response regulator for colanic capsule biosynthesis [Shigella boydii Sb227] gi|110344019|gb|ABG70256.1| capsular synthesis regulator component B [Escherichia coli 536] gi|110615739|gb|ABF04406.1| positive response regulator for colanic capsule biosynthesis [Shigella flexneri 5 str. 8401] gi|115513535|gb|ABJ01610.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli APEC O1] gi|157077487|gb|ABV17195.1| capsular synthesis regulator component B [Escherichia coli E24377A] gi|157082031|gb|ABV11709.1| hypothetical protein CKO_00553 [Citrobacter koseri ATCC BAA-895] gi|169754397|gb|ACA77096.1| two component transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|169889672|gb|ACB03379.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli str. K-12 substr. DH10B] gi|170519975|gb|ACB18153.1| capsular synthesis regulator component B [Escherichia coli SMS-3-5] gi|187771155|gb|EDU34999.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4196] gi|188016061|gb|EDU54183.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4113] gi|189001896|gb|EDU70882.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4076] gi|189357669|gb|EDU76088.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4401] gi|189362949|gb|EDU81368.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4486] gi|189368312|gb|EDU86728.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4501] gi|189372788|gb|EDU91204.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC869] gi|189379041|gb|EDU97457.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC508] gi|190904548|gb|EDV64255.1| capsular synthesis regulator component B [Escherichia coli B7A] gi|190909451|gb|EDV69036.1| capsular synthesis regulator component B [Escherichia coli F11] gi|192931976|gb|EDV84575.1| capsular synthesis regulator component B [Escherichia coli E22] gi|192958537|gb|EDV88976.1| capsular synthesis regulator component B [Escherichia coli E110019] gi|194414841|gb|EDX31112.1| capsular synthesis regulator component B [Escherichia coli B171] gi|194418462|gb|EDX34551.1| capsular synthesis regulator component B [Shigella dysenteriae 1012] gi|194425071|gb|EDX41056.1| capsular synthesis regulator component B [Escherichia coli 101-1] gi|208726005|gb|EDZ75606.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4206] gi|208733871|gb|EDZ82558.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4045] gi|208740035|gb|EDZ87717.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4042] gi|209161100|gb|ACI38533.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. EC4115] gi|209747756|gb|ACI72185.1| positive response regulator for colanic capsule biosynthesis [Escherichia coli] gi|209747758|gb|ACI72186.1| positive response regulator for colanic capsule biosynthesis [Escherichia coli] gi|209747760|gb|ACI72187.1| positive response regulator for colanic capsule biosynthesis [Escherichia coli] gi|209912935|dbj|BAG78009.1| two-component response regulator [Escherichia coli SE11] gi|215265508|emb|CAS09910.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli O127:H6 str. E2348/69] gi|217320085|gb|EEC28510.1| capsular synthesis regulator component B [Escherichia coli O157:H7 str. TW14588] gi|218352562|emb|CAU98341.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli 55989] gi|218361554|emb|CAQ99145.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli IAI1] gi|218365904|emb|CAR03646.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli S88] gi|218370672|emb|CAR18481.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli IAI39] gi|218427944|emb|CAR08864.2| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli ED1a] gi|218432844|emb|CAR13738.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli UMN026] gi|222033979|emb|CAP76720.1| Capsular synthesis regulator component B [Escherichia coli LF82] gi|227835625|gb|EEJ46091.1| transcriptional regulator RcsB [Escherichia coli 83972] gi|238860871|gb|ACR62869.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli BW2952] gi|254593517|gb|ACT72878.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Escherichia coli O157:H7 str. TW14359] gi|257754854|dbj|BAI26356.1| DNA-binding response regulator RcsB in two-component regulatory system with RcsC and YojN [Escherichia coli O26:H11 str. 11368] gi|257759967|dbj|BAI31464.1| DNA-binding response regulator RcsB in two-component regulatory system with RcsC and YojN [Escherichia coli O103:H2 str. 12009] gi|257765290|dbj|BAI36785.1| DNA-binding response regulator RcsB in two-component regulatory system with RcsC and YojN [Escherichia coli O111:H- str. 11128] gi|260448689|gb|ACX39111.1| two component transcriptional regulator, LuxR family [Escherichia coli DH1] gi|281179309|dbj|BAI55639.1| two-component response regulator [Escherichia coli SE15] gi|281601667|gb|ADA74651.1| Capsular synthesis regulator component B [Shigella flexneri 2002017] gi|284922209|emb|CBG35291.1| regulator of capsule synthesis (two-component system response regulator) [Escherichia coli 042] gi|290763341|gb|ADD57302.1| Capsular synthesis regulator component B [Escherichia coli O55:H7 str. CB9615] gi|291323397|gb|EFE62825.1| two-component system [Escherichia coli B088] gi|291427892|gb|EFF00919.1| transcriptional regulator RcsB [Escherichia coli FVEC1412] gi|291433165|gb|EFF06144.1| two-component system [Escherichia coli B185] gi|291471049|gb|EFF13533.1| conserved hypothetical protein [Escherichia coli B354] gi|294493781|gb|ADE92537.1| capsular synthesis regulator component B [Escherichia coli IHE3034] gi|298278808|gb|EFI20322.1| transcriptional regulator RcsB [Escherichia coli FVEC1302] gi|299880504|gb|EFI88715.1| response regulator receiver domain protein [Escherichia coli MS 196-1] gi|300299216|gb|EFJ55601.1| response regulator receiver domain protein [Escherichia coli MS 185-1] gi|300307635|gb|EFJ62155.1| response regulator receiver domain protein [Escherichia coli MS 200-1] gi|300314465|gb|EFJ64249.1| response regulator receiver domain protein [Escherichia coli MS 175-1] gi|300358557|gb|EFJ74427.1| response regulator receiver domain protein [Escherichia coli MS 198-1] gi|300397538|gb|EFJ81076.1| response regulator receiver domain protein [Escherichia coli MS 69-1] gi|300404392|gb|EFJ87930.1| response regulator receiver domain protein [Escherichia coli MS 84-1] gi|300408611|gb|EFJ92149.1| response regulator receiver domain protein [Escherichia coli MS 45-1] gi|300413996|gb|EFJ97306.1| response regulator receiver domain protein [Escherichia coli MS 115-1] gi|300417605|gb|EFK00916.1| response regulator receiver domain protein [Escherichia coli MS 182-1] gi|300451607|gb|EFK15227.1| response regulator receiver domain protein [Escherichia coli MS 116-1] gi|300458098|gb|EFK21591.1| response regulator receiver domain protein [Escherichia coli MS 21-1] gi|300460807|gb|EFK24300.1| response regulator receiver domain protein [Escherichia coli MS 187-1] gi|300524872|gb|EFK45941.1| response regulator receiver domain protein [Escherichia coli MS 119-7] gi|300529322|gb|EFK50384.1| response regulator receiver domain protein [Escherichia coli MS 107-1] gi|300838211|gb|EFK65971.1| response regulator receiver domain protein [Escherichia coli MS 124-1] gi|300844861|gb|EFK72621.1| response regulator receiver domain protein [Escherichia coli MS 78-1] gi|301074223|gb|EFK89029.1| response regulator receiver domain protein [Escherichia coli MS 146-1] gi|305852063|gb|EFM52515.1| transcriptional regulator RcsB [Escherichia coli NC101] gi|306908715|gb|EFN39212.1| two component transcriptional regulator, LuxR family [Escherichia coli W] gi|307554284|gb|ADN47059.1| positive response regulator for colanic capsule biosynthesis [Escherichia coli ABU 83972] gi|307626244|gb|ADN70548.1| transcriptional regulator RcsB [Escherichia coli UM146] gi|308123388|gb|EFO60650.1| response regulator receiver domain protein [Escherichia coli MS 145-7] gi|308925513|gb|EFP70999.1| capsular synthesis regulator component B [Shigella dysenteriae 1617] gi|309702528|emb|CBJ01855.1| regulator of capsule synthesis (two-component system response regulator) [Escherichia coli ETEC H10407] gi|310332124|gb|EFP99359.1| capsular synthesis regulator component B [Escherichia coli 1827-70] gi|312287716|gb|EFR15621.1| capsular synthesis regulator component B [Escherichia coli 2362-75] gi|312946839|gb|ADR27666.1| transcriptional regulator RcsB [Escherichia coli O83:H1 str. NRG 857C] gi|313651333|gb|EFS15731.1| capsular synthesis regulator component B [Shigella flexneri 2a str. 2457T] gi|315061525|gb|ADT75852.1| DNA-binding response regulator in two-component regulatory system with RcsC and RcsD [Escherichia coli W] gi|315136850|dbj|BAJ44009.1| transcriptional regulator RcsB [Escherichia coli DH1] gi|315255152|gb|EFU35120.1| response regulator receiver domain protein [Escherichia coli MS 85-1] gi|315285844|gb|EFU45284.1| response regulator receiver domain protein [Escherichia coli MS 110-3] gi|315292175|gb|EFU51527.1| response regulator receiver domain protein [Escherichia coli MS 153-1] gi|315298050|gb|EFU57319.1| response regulator receiver domain protein [Escherichia coli MS 16-3] gi|315615479|gb|EFU96111.1| capsular synthesis regulator component B [Escherichia coli 3431] gi|320177231|gb|EFW52239.1| DNA-binding capsular synthesis response regulator RcsB [Shigella dysenteriae CDC 74-1112] gi|320178809|gb|EFW53772.1| DNA-binding capsular synthesis response regulator RcsB [Shigella boydii ATCC 9905] gi|320185892|gb|EFW60642.1| DNA-binding capsular synthesis response regulator RcsB [Shigella flexneri CDC 796-83] gi|320192156|gb|EFW66801.1| DNA-binding capsular synthesis response regulator RcsB [Escherichia coli O157:H7 str. EC1212] gi|320196089|gb|EFW70713.1| DNA-binding capsular synthesis response regulator RcsB [Escherichia coli WV_060327] gi|320199812|gb|EFW74401.1| DNA-binding capsular synthesis response regulator RcsB [Escherichia coli EC4100B] gi|320641286|gb|EFX10764.1| transcriptional regulator RcsB [Escherichia coli O157:H7 str. G5101] gi|320646559|gb|EFX15475.1| transcriptional regulator RcsB [Escherichia coli O157:H- str. 493-89] gi|320651930|gb|EFX20305.1| transcriptional regulator RcsB [Escherichia coli O157:H- str. H 2687] gi|320657655|gb|EFX25453.1| transcriptional regulator RcsB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320668011|gb|EFX34914.1| transcriptional regulator RcsB [Escherichia coli O157:H7 str. LSU-61] gi|323152278|gb|EFZ38568.1| capsular synthesis regulator component B [Escherichia coli EPECa14] gi|323161684|gb|EFZ47567.1| capsular synthesis regulator component B [Escherichia coli E128010] gi|323168625|gb|EFZ54305.1| capsular synthesis regulator component B [Shigella sonnei 53G] gi|323176865|gb|EFZ62455.1| capsular synthesis regulator component B [Escherichia coli 1180] gi|323184158|gb|EFZ69535.1| capsular synthesis regulator component B [Escherichia coli 1357] gi|323188055|gb|EFZ73350.1| capsular synthesis regulator component B [Escherichia coli RN587/1] gi|323377895|gb|ADX50163.1| two component transcriptional regulator, LuxR family [Escherichia coli KO11] gi|323936832|gb|EGB33117.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323941088|gb|EGB37275.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323945033|gb|EGB41098.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323952011|gb|EGB47885.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323955985|gb|EGB51738.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|323961523|gb|EGB57131.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|323967659|gb|EGB63071.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|323973082|gb|EGB68276.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|323977586|gb|EGB72672.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|324006588|gb|EGB75807.1| response regulator receiver domain protein [Escherichia coli MS 57-2] gi|324014017|gb|EGB83236.1| response regulator receiver domain protein [Escherichia coli MS 60-1] gi|324020896|gb|EGB90115.1| response regulator receiver domain protein [Escherichia coli MS 117-3] gi|324117893|gb|EGC11792.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|326339571|gb|EGD63382.1| DNA-binding capsular synthesis response regulator RcsB [Escherichia coli O157:H7 str. 1125] gi|326344032|gb|EGD67793.1| DNA-binding capsular synthesis response regulator RcsB [Escherichia coli O157:H7 str. 1044] gi|327252486|gb|EGE64145.1| capsular synthesis regulator component B [Escherichia coli STEC_7v] gi|330912048|gb|EGH40558.1| DNA-binding capsular synthesis response regulator RcsB [Escherichia coli AA86] gi|331056545|gb|EGI28554.1| capsular synthesis regulator component B [Escherichia coli TA206] gi|331059522|gb|EGI31499.1| capsular synthesis regulator component B [Escherichia coli TA143] gi|331064117|gb|EGI36028.1| capsular synthesis regulator component B [Escherichia coli TA271] gi|331078846|gb|EGI50048.1| capsular synthesis regulator component B [Escherichia coli H299] gi|332093602|gb|EGI98660.1| capsular synthesis regulator component B [Shigella boydii 3594-74] gi|332343999|gb|AEE57333.1| capsular synthesis regulator protein component B [Escherichia coli UMNK88] gi|332754863|gb|EGJ85228.1| capsular synthesis regulator component B [Shigella flexneri 4343-70] gi|332755265|gb|EGJ85629.1| capsular synthesis regulator component B [Shigella flexneri K-671] gi|332756136|gb|EGJ86487.1| capsular synthesis regulator component B [Shigella flexneri 2747-71] gi|332766036|gb|EGJ96246.1| rcsB [Shigella flexneri 2930-71] gi|333002002|gb|EGK21568.1| capsular synthesis regulator component B [Shigella flexneri K-218] gi|333002944|gb|EGK22500.1| capsular synthesis regulator component B [Shigella flexneri K-272] gi|333016653|gb|EGK35982.1| capsular synthesis regulator component B [Shigella flexneri K-304] gi|333016949|gb|EGK36273.1| capsular synthesis regulator component B [Shigella flexneri K-227] Length = 216 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|332093155|gb|EGI98215.1| capsular synthesis regulator component B [Shigella boydii 5216-82] Length = 216 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|297191367|ref|ZP_06908765.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297150892|gb|EDY64531.2| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 218 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 29/56 (51%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L ++R LT RE L L +G ++ IA +L +S V ++GS KLD Sbjct: 143 QLIRRRRDPLERLTPREREVLGLVAEGKSNNAIARQLVVSEAAVGKHIGSILAKLD 198 >gi|265754224|ref|ZP_06089413.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] gi|263234933|gb|EEZ20488.1| transcriptional regulator [Bacteroides sp. 3_1_33FAA] Length = 214 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 9/172 (5%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D PN ++ D LF ++ L I+ + +E I S LS ++ F G +F V Sbjct: 45 DHPNAVVVL--DYTLFDTSAEYLLILQERFKEAHFILFSDSLSEDFIRRMV-FGGTSFSV 101 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 + K+ +I E L A + + C ++ +K+ +LT E L Sbjct: 102 VM---KDAPMIEIEEGLRKAEQRL---QYICTRIAWQLQHKEEKKEKRGSSLTVTECEIL 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G T++EIA + LSV+TV + + KL+ N +A A+R G + Sbjct: 156 KLMALGKTTKEIAAERFLSVYTVMTHRKNIFRKLEVNNVYEATKYALRAGIV 207 >gi|229490673|ref|ZP_04384511.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|229322493|gb|EEN88276.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 227 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 39/68 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +SS+ LT+RE L+L +G ++ +I E+L +S TV ++ + KL+ R +A+ Sbjct: 160 QSSSKERLTDRELEVLRLLANGLSNIKIGERLFISPTTVKFHVSNIMRKLEVSRRAEAVY 219 Query: 227 KAIRFGYI 234 A + G I Sbjct: 220 AASKQGLI 227 >gi|226941833|ref|YP_002796907.1| two-component response regulator [Laribacter hongkongensis HLHK9] gi|226716760|gb|ACO75898.1| Probable two-component response regulator [Laribacter hongkongensis HLHK9] Length = 196 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE +Q G ++EIA +L +S +TV +L S KL +R+Q + K Sbjct: 141 LTEREREVVQALRRGLANKEIARELDISENTVKKHLSSVFQKLGVEDRLQLLIK 194 >gi|167565790|ref|ZP_02358706.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] Length = 261 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 31/60 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L T+++IA LGLSV T+ Y+ + K A ++ + I A GY Sbjct: 161 LTERERQVLFFLARNKTAKDIANILGLSVRTIEQYMENLRCKFSASSKNELIDIAACAGY 220 >gi|156622676|dbj|BAF76155.1| putative DNA-binding protein SalA [Pseudomonas sp. MIS38] Length = 274 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 2/50 (4%) Query: 173 NLTERETS-CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L+ RET C+ L G T+ E+AE+L L V+TV +YL A +KL R Sbjct: 203 SLSNRETEVCIGLLA-GRTAPELAEQLQLKVNTVESYLKRAAIKLGISGR 251 >gi|26989306|ref|NP_744731.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|24984158|gb|AAN68195.1|AE016452_8 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] Length = 280 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 6/64 (9%) Query: 160 FLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 F + ++R AA N LTERE QL G++++ +AE+LG+S T+ ++ + Sbjct: 182 FENILEQRIHAALNNFGSSLLTERECRIAQLILRGHSTKSLAERLGVSEDTIKSHRKNVY 241 Query: 214 VKLD 217 KLD Sbjct: 242 AKLD 245 >gi|23336584|ref|ZP_00121794.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bifidobacterium longum DJO10A] gi|189440631|ref|YP_001955712.1| putative response regulator [Bifidobacterium longum DJO10A] gi|312133936|ref|YP_004001275.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|322689868|ref|YP_004209602.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|322691808|ref|YP_004221378.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|189429066|gb|ACD99214.1| Putative response regulator [Bifidobacterium longum DJO10A] gi|291516417|emb|CBK70033.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bifidobacterium longum subsp. longum F8] gi|311773230|gb|ADQ02718.1| Putative response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|320456664|dbj|BAJ67286.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320461204|dbj|BAJ71824.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 231 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + Sbjct: 170 RLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTE 220 >gi|15599074|ref|NP_252568.1| transcriptional regulator NarL [Pseudomonas aeruginosa PAO1] gi|107103394|ref|ZP_01367312.1| hypothetical protein PaerPA_01004464 [Pseudomonas aeruginosa PACS2] gi|116051915|ref|YP_789242.1| transcriptional regulator NarL [Pseudomonas aeruginosa UCBPP-PA14] gi|218889841|ref|YP_002438705.1| transcriptional regulator NarL [Pseudomonas aeruginosa LESB58] gi|254236778|ref|ZP_04930101.1| two-component response regulator NarL [Pseudomonas aeruginosa C3719] gi|254242570|ref|ZP_04935892.1| two-component response regulator NarL [Pseudomonas aeruginosa 2192] gi|296387604|ref|ZP_06877079.1| transcriptional regulator NarL [Pseudomonas aeruginosa PAb1] gi|313109299|ref|ZP_07795267.1| two-component response regulator NarL [Pseudomonas aeruginosa 39016] gi|9950059|gb|AAG07266.1|AE004805_4 two-component response regulator NarL [Pseudomonas aeruginosa PAO1] gi|115587136|gb|ABJ13151.1| putative nitrate/nitrite response regulator; NarL [Pseudomonas aeruginosa UCBPP-PA14] gi|126168709|gb|EAZ54220.1| two-component response regulator NarL [Pseudomonas aeruginosa C3719] gi|126195948|gb|EAZ60011.1| two-component response regulator NarL [Pseudomonas aeruginosa 2192] gi|218770064|emb|CAW25826.1| two-component response regulator NarL [Pseudomonas aeruginosa LESB58] gi|310881769|gb|EFQ40363.1| two-component response regulator NarL [Pseudomonas aeruginosa 39016] Length = 219 Score = 35.8 bits (81), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS + LTERE L+ GY+++ IA KL ++ TV ++ KL +R++A Sbjct: 152 RSKSLDELTERERQILRQIAHGYSNKMIARKLDITEGTVKVHVKRVLHKLGMRSRVEAAV 211 Query: 227 KAI 229 A+ Sbjct: 212 WAV 214 >gi|332703486|ref|ZP_08423574.1| transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] gi|332553635|gb|EGJ50679.1| transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] Length = 213 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 9/90 (10%) Query: 150 HGACY---QVITDFLELFKK------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 HG + +V++ F+ +K +S+ LT RE L+ G ++EEIA+ L + Sbjct: 122 HGDLWYSREVLSRFVRDERKVRPQATQSADTSTLTPREREVLERIAAGASNEEIAKNLFI 181 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 S TV + + K+ NRIQA A++ Sbjct: 182 SPSTVKTHAYNIYAKIRVPNRIQAALWAVQ 211 >gi|312195094|ref|YP_004015155.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311226430|gb|ADP79285.1| transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 371 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE ++L +G+++ ++AE L +S+ TV +L A V NR Q Sbjct: 300 KLSARERDVVRLVAEGHSNRQVAEALCISIDTVKHHLTHALVATACTNRTQ 350 >gi|262373940|ref|ZP_06067217.1| response regulator [Acinetobacter junii SH205] gi|262310951|gb|EEY92038.1| response regulator [Acinetobacter junii SH205] Length = 211 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +L+ERE + + +++EIA+KL +SV TVN Y KL + + Sbjct: 138 LSDTQQSPFDSLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDV 197 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 198 KLTHLAIRYGLI 209 >gi|262164972|ref|ZP_06032710.1| nitrate/nitrite response regulator protein [Vibrio mimicus VM223] gi|262027352|gb|EEY46019.1| nitrate/nitrite response regulator protein [Vibrio mimicus VM223] Length = 220 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 160 LTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 210 >gi|238927983|ref|ZP_04659743.1| response regulator [Selenomonas flueggei ATCC 43531] gi|238883943|gb|EEQ47581.1| response regulator [Selenomonas flueggei ATCC 43531] Length = 223 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT RE L G ++++I + LGLS TV +L S KL +R QA+ Sbjct: 155 SRGERLTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSVFHKLKVNDRTQALVYV 214 Query: 229 IR 230 ++ Sbjct: 215 LK 216 >gi|237734801|ref|ZP_04565282.1| transcriptional regulator [Mollicutes bacterium D7] gi|229382129|gb|EEO32220.1| transcriptional regulator [Coprobacillus sp. D7] Length = 71 Score = 35.8 bits (81), Expect = 4.7, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 32/58 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L ++ +IA+ LG+S TV ++ + KL +RIQA+ + I+F Sbjct: 9 LTPREKEIFNLLIKNQSTRDIAKTLGISEKTVRNHISNVIQKLGVDSRIQAVFELIKF 66 >gi|262200217|ref|YP_003271425.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262083564|gb|ACY19532.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 489 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE L+ DG ++ EIA L +S TV ++ +KL +R+QA Sbjct: 431 LTERERDVLRCVSDGLSNAEIAAALVISEATVKTHVSRILMKLGLQSRVQA 481 >gi|226307167|ref|YP_002767127.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226186284|dbj|BAH34388.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 224 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Query: 152 ACYQVITDFLELFKKRSSAAR---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +I+ FL + S + LT RE + L G +++EIA +L +S T + Sbjct: 132 ATSALISRFLSTPSRADSTSGIFGQLTPRELEVVTLVALGMSNDEIAAELVISAVTAKTH 191 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + A KLD +R Q + A + G + Sbjct: 192 VNRAMTKLDVRDRAQLVVLAYQCGVV 217 >gi|212715195|ref|ZP_03323323.1| hypothetical protein BIFCAT_00084 [Bifidobacterium catenulatum DSM 16992] gi|212661876|gb|EEB22451.1| hypothetical protein BIFCAT_00084 [Bifidobacterium catenulatum DSM 16992] Length = 218 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 34/67 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + A +LT RE + L +G EIAE+L +S T+ ++ S KL+ Q Sbjct: 148 ISREAETAPSLTVREEQIISLCAEGMLDREIAERLRISEATIRKHIQSILRKLNCKTSRQ 207 Query: 224 AIAKAIR 230 A+A +R Sbjct: 208 AVALWVR 214 >gi|157161700|ref|YP_001459018.1| transcriptional regulator RcsB [Escherichia coli HS] gi|187730830|ref|YP_001879436.1| transcriptional regulator RcsB [Shigella boydii CDC 3083-94] gi|188493472|ref|ZP_03000742.1| capsular synthesis regulator component B [Escherichia coli 53638] gi|331642847|ref|ZP_08343982.1| capsular synthesis regulator component B [Escherichia coli H736] gi|331647872|ref|ZP_08348964.1| capsular synthesis regulator component B [Escherichia coli M605] gi|331653652|ref|ZP_08354653.1| capsular synthesis regulator component B [Escherichia coli M718] gi|331673736|ref|ZP_08374499.1| capsular synthesis regulator component B [Escherichia coli TA280] gi|331678172|ref|ZP_08378847.1| capsular synthesis regulator component B [Escherichia coli H591] gi|157067380|gb|ABV06635.1| capsular synthesis regulator component B [Escherichia coli HS] gi|187427822|gb|ACD07096.1| capsular synthesis regulator component B [Shigella boydii CDC 3083-94] gi|188488671|gb|EDU63774.1| capsular synthesis regulator component B [Escherichia coli 53638] gi|331039645|gb|EGI11865.1| capsular synthesis regulator component B [Escherichia coli H736] gi|331043596|gb|EGI15734.1| capsular synthesis regulator component B [Escherichia coli M605] gi|331048501|gb|EGI20577.1| capsular synthesis regulator component B [Escherichia coli M718] gi|331069009|gb|EGI40401.1| capsular synthesis regulator component B [Escherichia coli TA280] gi|331074632|gb|EGI45952.1| capsular synthesis regulator component B [Escherichia coli H591] Length = 228 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 146 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 205 Query: 217 DAVNRI 222 N I Sbjct: 206 GVENDI 211 >gi|88704024|ref|ZP_01101739.1| two-component system response regulator [Congregibacter litoralis KT71] gi|88701851|gb|EAQ98955.1| two-component system response regulator [Congregibacter litoralis KT71] Length = 206 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LT RE + G G+ + EIAE L +S TV A L + KL +R+Q Sbjct: 145 DLTPREEEVALMVGRGFNNREIAEALSVSERTVKANLTAIFEKLGLRDRVQ 195 >gi|254240419|ref|ZP_04933741.1| hypothetical protein PA2G_01067 [Pseudomonas aeruginosa 2192] gi|8671336|emb|CAB95008.1| response regulator [Pseudomonas aeruginosa] gi|126193797|gb|EAZ57860.1| hypothetical protein PA2G_01067 [Pseudomonas aeruginosa 2192] Length = 225 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 33/66 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A R LT RE +L G E+AE LG+S TV+ ++ KL + + + +A Sbjct: 143 AALRGLTRREFEIFRLLARGLALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAELVHRA 202 Query: 229 IRFGYI 234 I G + Sbjct: 203 IDSGVL 208 >gi|330981844|gb|EGH79947.1| regulatory protein, LuxR [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 226 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Query: 173 NLTERETS-CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+ERET CL L G+T+ E AE+L L V+TV +Y A +KL R Sbjct: 160 TLSERETQVCLGLLA-GHTALEQAERLALKVNTVGSYQRRAAIKLGISGR 208 >gi|330470066|ref|YP_004407809.1| regulatory protein LuxR [Verrucosispora maris AB-18-032] gi|328813037|gb|AEB47209.1| regulatory protein LuxR [Verrucosispora maris AB-18-032] Length = 228 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L+L GY +EIA +L +S+ TV ++ + KL NR + Sbjct: 167 QLTNREREVLRLLARGYAYKEIARELYISIKTVETHVSNVLRKLQMSNRYE 217 >gi|297538769|ref|YP_003674538.1| LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297258116|gb|ADI29961.1| transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 281 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 29/55 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 NL+ RE + G T EIA L +S +TV ++L KL+ R QA+AK Sbjct: 223 NLSVRELEIIDWVKQGKTDSEIAMILFISQNTVKSHLKHVFEKLNVSRRAQAVAK 277 >gi|261209256|ref|ZP_05923648.1| regulatory protein [Enterococcus faecium TC 6] gi|289566005|ref|ZP_06446443.1| regulatory protein [Enterococcus faecium D344SRF] gi|294616191|ref|ZP_06695988.1| DNA-binding response regulator [Enterococcus faecium E1636] gi|260076802|gb|EEW64537.1| regulatory protein [Enterococcus faecium TC 6] gi|289162203|gb|EFD10065.1| regulatory protein [Enterococcus faecium D344SRF] gi|291590946|gb|EFF22658.1| DNA-binding response regulator [Enterococcus faecium E1636] Length = 209 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 155 QVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++I F ++ K + S A + +ERE + ++ G ++EIA+ L LS TV Y+ Sbjct: 127 EIIETFTQMMKNKPTIDSHAYASFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYIS 186 Query: 211 SATVKLDAVNRIQ 223 KLD +R Q Sbjct: 187 QLLEKLDLRDRTQ 199 >gi|256833092|ref|YP_003161819.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] gi|256686623|gb|ACV09516.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] Length = 233 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 T+ LE + S+ A +LT+RE + L G ++ EIA +L ++ TV ++G K Sbjct: 154 TETLESSPQASTIA-SLTDRERDVMLLIAKGKSNTEIARELFVAEATVKTHVGRILQKFG 212 Query: 218 AVNRIQAIAKAIRFGYI 234 A +R+Q + A G + Sbjct: 213 ARDRVQIVVAAYENGLV 229 >gi|205353387|ref|YP_002227188.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273168|emb|CAR38129.1| regulator of capsule synthesis B component [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628478|gb|EGE34821.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 216 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|223934694|ref|ZP_03626614.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896649|gb|EEF63090.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 229 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 10/110 (9%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----KKRSSAARNLTERETSC 181 H+ G I + +L+ ++ + ++ LELF + SS NLT+RE Sbjct: 116 HEGGKKIMQAIRHVLSGQIFV-----SEKMSARILELFSGHGTQAASSPIENLTDREFEV 170 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L G+G +++EIA + +S TV + + KL + I +R+ Sbjct: 171 FRLIGEGLSTKEIAANMHVSAKTVEVHRMNIKTKLGLKTAAELIRYTVRW 220 >gi|168185605|ref|ZP_02620240.1| response regulator [Clostridium botulinum C str. Eklund] gi|169296459|gb|EDS78592.1| response regulator [Clostridium botulinum C str. Eklund] Length = 206 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 31/50 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE L L G+G +++EI++K+ LS T+ Y+ + KL +R Q Sbjct: 148 LTEREFEILALIGEGLSNKEISKKVYLSEGTIRNYITNLLQKLQLRDRTQ 197 >gi|146312439|ref|YP_001177513.1| transcriptional regulator RcsB [Enterobacter sp. 638] gi|145319315|gb|ABP61462.1| two component transcriptional regulator, LuxR family [Enterobacter sp. 638] Length = 216 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|160895667|ref|YP_001561249.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160361251|gb|ABX32864.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 339 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 28/55 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RET L G T+ +IA+ LG+S TVN +L KL R A A A Sbjct: 276 LTPRETEVLSWLSKGKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRTAAAAVA 330 >gi|260682876|ref|YP_003214161.1| two-component response regulator [Clostridium difficile CD196] gi|260686474|ref|YP_003217607.1| two-component response regulator [Clostridium difficile R20291] gi|260209039|emb|CBA62150.1| two-component response regulator [Clostridium difficile CD196] gi|260212490|emb|CBE03410.1| two-component response regulator [Clostridium difficile R20291] Length = 217 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 38/66 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S NLTE+E S ++L +G ++EI+++L LS T+ + + KL+ +R Q Sbjct: 147 QKHISDMYNLTEKEISIIRLIANGLNNKEISQELFLSEGTIKNNITNILGKLELRDRTQL 206 Query: 225 IAKAIR 230 + A + Sbjct: 207 VIFAFK 212 >gi|69249446|ref|ZP_00604982.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus faecium DO] gi|257880327|ref|ZP_05659980.1| regulatory protein [Enterococcus faecium 1,230,933] gi|257894240|ref|ZP_05673893.1| regulatory protein [Enterococcus faecium 1,231,408] gi|260562369|ref|ZP_05832883.1| regulatory protein [Enterococcus faecium C68] gi|293553074|ref|ZP_06673716.1| DNA-binding response regulator [Enterococcus faecium E1039] gi|293559445|ref|ZP_06675983.1| DNA-binding response regulator [Enterococcus faecium E1162] gi|293568332|ref|ZP_06679655.1| DNA-binding response regulator [Enterococcus faecium E1071] gi|294618821|ref|ZP_06698347.1| DNA-binding response regulator [Enterococcus faecium E1679] gi|314937987|ref|ZP_07845298.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314941587|ref|ZP_07848471.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314948427|ref|ZP_07851815.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314951384|ref|ZP_07854436.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314995348|ref|ZP_07860454.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|68194157|gb|EAN08690.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus faecium DO] gi|257814555|gb|EEV43313.1| regulatory protein [Enterococcus faecium 1,230,933] gi|257830619|gb|EEV57226.1| regulatory protein [Enterococcus faecium 1,231,408] gi|260073293|gb|EEW61634.1| regulatory protein [Enterococcus faecium C68] gi|291588941|gb|EFF20766.1| DNA-binding response regulator [Enterococcus faecium E1071] gi|291594944|gb|EFF26295.1| DNA-binding response regulator [Enterococcus faecium E1679] gi|291602783|gb|EFF32993.1| DNA-binding response regulator [Enterococcus faecium E1039] gi|291606600|gb|EFF35996.1| DNA-binding response regulator [Enterococcus faecium E1162] gi|313590441|gb|EFR69286.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313596442|gb|EFR75287.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313599607|gb|EFR78450.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313642662|gb|EFS07242.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313645152|gb|EFS09732.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 209 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 155 QVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++I F ++ K + S A + +ERE + ++ G ++EIA+ L LS TV Y+ Sbjct: 127 EIIETFTQMMKNKPTIDSHAYASFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYIS 186 Query: 211 SATVKLDAVNRIQ 223 KLD +R Q Sbjct: 187 QLLEKLDLRDRTQ 199 >gi|332162344|ref|YP_004298921.1| transcriptional regulator RcsB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666574|gb|ADZ43218.1| transcriptional regulator RcsB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860454|emb|CBX70761.1| capsular synthesis regulator component B [Yersinia enterocolitica W22703] Length = 215 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISANGYGDKRLSPKESEVLRLFAEGFLVTEIARKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|314991314|ref|ZP_07856793.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313594087|gb|EFR72932.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] Length = 209 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 155 QVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++I F ++ K + S A + +ERE + ++ G ++EIA+ L LS TV Y+ Sbjct: 127 EIIETFTQMMKNKPTIDSHAYASFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYIS 186 Query: 211 SATVKLDAVNRIQ 223 KLD +R Q Sbjct: 187 QLLEKLDLRDRTQ 199 >gi|304438628|ref|ZP_07398567.1| nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368466|gb|EFM22152.1| nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 233 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT RE L G ++++I + LGLS TV +L S KL +R QA+ Sbjct: 165 SRGERLTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSVFHKLKVNDRTQALVYV 224 Query: 229 IR 230 ++ Sbjct: 225 LK 226 >gi|298243906|ref|ZP_06967713.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556960|gb|EFH90824.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 266 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTE+E ++ G +++EIAE+L S TV YL KL +R Q A+R G Sbjct: 192 LTEKELEIIRYVAAGLSNKEIAERLSYSEKTVKNYLSIIFQKLHLRDRTQVAIFALRQGL 251 Query: 234 IC 235 + Sbjct: 252 LT 253 >gi|282801728|gb|ADB02831.1| AzicR2 [Kibdelosporangium sp. MJ126-NF4] Length = 214 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 39/75 (52%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L + + R+SAA L++RE L L +G T+ E A +L L+ T+ ++L + KL + Sbjct: 133 LLMSRVRASAAGPLSQRELEVLHLVAEGATNREAAARLFLTEATIKSHLLNIYGKLGVSD 192 Query: 221 RIQAIAKAIRFGYIC 235 R A+ G + Sbjct: 193 RAAAVTAGFNRGLLV 207 >gi|227539554|ref|ZP_03969603.1| possible transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] gi|227240619|gb|EEI90634.1| possible transcriptional regulator [Sphingobacterium spiritivorum ATCC 33300] Length = 130 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +QL DG+ S+ I+EKL +S +TV + KL+ N + + A+++ Sbjct: 70 LTNREIQIIQLICDGHNSKVISEKLFISFNTVETHRKHIFQKLNIKNSLGLLRLALQYDL 129 Query: 234 I 234 I Sbjct: 130 I 130 >gi|186471902|ref|YP_001863220.1| ATP-dependent transcription regulator LuxR [Burkholderia phymatum STM815] gi|184198211|gb|ACC76174.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia phymatum STM815] Length = 928 Score = 35.8 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+L G +++EIA + + TV +L + KLDA +R A+ +A+ G Sbjct: 864 LTPKEREILELLGRSLSNKEIALAMSVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 923 Query: 234 I 234 + Sbjct: 924 L 924 >gi|117620574|ref|YP_857279.1| response regulator [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561981|gb|ABK38929.1| response regulator UvrY [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 214 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ERE + + G +I+E+L LS TVN+Y KL+ ++ AIR+ Sbjct: 147 KSLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLNINGDVELTHLAIRY 206 Query: 232 GYI 234 G + Sbjct: 207 GML 209 >gi|298250271|ref|ZP_06974075.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548275|gb|EFH82142.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1070 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LTERE L+ G T+ +IAE+L +S TV A+L S K+ +R A A+ Sbjct: 1009 DLTEREVEVLRSLATGLTNAQIAEQLVISPRTVQAHLSSIYNKIGVSSRSAATRYAL 1065 >gi|262200107|ref|YP_003271315.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262083454|gb|ACY19422.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 867 Score = 35.8 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G ++ EI E+L LS TV ++ A +K+D +R +A IR Sbjct: 810 LTVREREIANLVAAGLSNREIGERLSLSTRTVEGHVYRACMKVDVEDR-AGLAARIR 865 >gi|302547713|ref|ZP_07300055.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces hygroscopicus ATCC 53653] gi|302465331|gb|EFL28424.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces himastatinicus ATCC 53653] Length = 218 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 28/48 (58%) Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ERE + G G ++ EIA +L L++ TV A++ +LD NR+Q Sbjct: 161 ERERDVARAVGHGRSNAEIARELHLALPTVKAHVSRILTRLDLNNRVQ 208 >gi|170697002|ref|ZP_02888098.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170138176|gb|EDT06408.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 223 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 28/50 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 A R LT RE ++L G GYT EIA +L S T+++ SA KL V Sbjct: 148 ATRALTTREIEVVRLFGAGYTVGEIAAQLHRSKQTISSQKSSAMKKLGIV 197 >gi|159037948|ref|YP_001537201.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916783|gb|ABV98210.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 230 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G ++ EIA+ L +S TV ++G KL +R+QA+ A G Sbjct: 166 LTGREREVLIQVARGRSNAEIAQALSVSETTVKTHVGHVLTKLRLRDRVQAVVLAYESGL 225 Query: 234 I 234 I Sbjct: 226 I 226 >gi|118476319|ref|YP_893470.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415544|gb|ABK83963.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 216 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 145 KVESNENELTEREKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAV 204 Query: 226 AKAIR 230 A+R Sbjct: 205 IYAVR 209 >gi|116625222|ref|YP_827378.1| LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228384|gb|ABJ87093.1| transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 188 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A NLTERE L+ G +++E+A+++ +S +TV A+ +KL R IAK + Sbjct: 110 AMYNLTEREEQTLKGILMGLSTKEVADQMSISPNTVKAFTRLIMIKLGVTTRWGIIAKVL 169 >gi|114327019|ref|YP_744176.1| two-component response regulator [Granulibacter bethesdensis CGDNIH1] gi|114315193|gb|ABI61253.1| two-component response regulator [Granulibacter bethesdensis CGDNIH1] Length = 214 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 8/107 (7%) Query: 130 GYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLA 185 GYV E ++LA + ++ QV+ L L + S+ A L+ +E L+L Sbjct: 103 GYVTKNDDPETILLAIDQVMNNGVYLGQVVAQSLALGRLMPDSNVAAELSVKEKRVLELL 162 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 GDG + EIA +LG+S TV G+ +L +I+ A ++F Sbjct: 163 GDGLSLSEIAYELGVSYKTVANMSGALRTRL----KIRTGAALVKFA 205 >gi|2765450|emb|CAA75536.1| nitrate/nitrite regulatory protein [Pseudomonas aeruginosa PAO1] Length = 216 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS + LTERE L+ GY+++ IA KL ++ TV ++ KL +R++A Sbjct: 149 RSKSLDELTERERQILRQIAHGYSNKMIARKLDITEGTVKVHVKRVLHKLGMRSRVEAAV 208 Query: 227 KAI 229 A+ Sbjct: 209 WAV 211 >gi|15614681|ref|NP_242984.1| hypothetical protein BH2118 [Bacillus halodurans C-125] gi|10174737|dbj|BAB05837.1| BH2118 [Bacillus halodurans C-125] Length = 355 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 30/48 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE ++ +GYT+++I+ L +S HTV +L S K++ +R Sbjct: 296 LTQREIQIVEQIVNGYTTKQISSHLYISTHTVQDHLKSIFAKMNVNSR 343 >gi|116626537|ref|YP_828693.1| LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116229699|gb|ABJ88408.1| transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 190 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 4/54 (7%) Query: 167 RSSAAR----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 RS AAR +LT RE CL L +G + EE+A LG+ TV A L KL Sbjct: 107 RSQAARQIAEDLTGREFECLLLRAEGLSYEEMATALGIRSGTVGALLARVRRKL 160 >gi|333023482|ref|ZP_08451546.1| putative two-component response regulator [Streptomyces sp. Tu6071] gi|332743334|gb|EGJ73775.1| putative two-component response regulator [Streptomyces sp. Tu6071] Length = 227 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE + G T++EI LGLS+ +V YL KL NR++ A A G Sbjct: 160 LSAREQEITEHVAQGRTNQEIGTALGLSLSSVKTYLDRVRTKLGLRNRVEIAAWAWERGL 219 Query: 234 I 234 + Sbjct: 220 V 220 >gi|319651764|ref|ZP_08005890.1| spore germination protein gerE [Bacillus sp. 2_A_57_CT2] gi|317396583|gb|EFV77295.1| spore germination protein gerE [Bacillus sp. 2_A_57_CT2] Length = 74 Score = 35.8 bits (81), Expect = 4.8, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T+ EIA +L +S TV ++ +A KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTREIAGELFISEKTVRNHISNAMQKLGVKGRSQAVVELLRMG 70 >gi|260598666|ref|YP_003211237.1| transcriptional regulator RcsB [Cronobacter turicensis z3032] gi|260217843|emb|CBA32355.1| Capsular synthesis regulator component B [Cronobacter turicensis z3032] Length = 216 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|239621538|ref|ZP_04664569.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515413|gb|EEQ55280.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 231 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + Sbjct: 170 RLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTE 220 >gi|85858693|ref|YP_460895.1| response regulator [Syntrophus aciditrophicus SB] gi|85721784|gb|ABC76727.1| response regulator containing a CheY-like receiver domain and an HD-GYP domain [Syntrophus aciditrophicus SB] Length = 363 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 5/75 (6%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 IIEA+ +I+ FL+ SS +L+ +E L +G T++EI+E L LS+ +V Sbjct: 281 IIEAN--VQNIISPFLQSL---SSELAHLSPKEVQVANLVKEGKTTKEISELLNLSIRSV 335 Query: 206 NAYLGSATVKLDAVN 220 ++ + VKL N Sbjct: 336 ESHRDNIRVKLGISN 350 >gi|107101409|ref|ZP_01365327.1| hypothetical protein PaerPA_01002448 [Pseudomonas aeruginosa PACS2] gi|254235065|ref|ZP_04928388.1| hypothetical protein PACG_00946 [Pseudomonas aeruginosa C3719] gi|126166996|gb|EAZ52507.1| hypothetical protein PACG_00946 [Pseudomonas aeruginosa C3719] Length = 225 Score = 35.8 bits (81), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 33/66 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A R LT RE +L G E+AE LG+S TV+ ++ KL + + + +A Sbjct: 143 AALRGLTRREFEIFRLLARGLALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAELVHRA 202 Query: 229 IRFGYI 234 I G + Sbjct: 203 IDSGVL 208 >gi|229526813|ref|ZP_04416217.1| nitrate/nitrite response regulator protein [Vibrio cholerae bv. albensis VL426] gi|229336971|gb|EEO01989.1| nitrate/nitrite response regulator protein [Vibrio cholerae bv. albensis VL426] Length = 207 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 147 LTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 197 >gi|224023812|ref|ZP_03642178.1| hypothetical protein BACCOPRO_00528 [Bacteroides coprophilus DSM 18228] gi|224017034|gb|EEF75046.1| hypothetical protein BACCOPRO_00528 [Bacteroides coprophilus DSM 18228] Length = 149 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 36/65 (55%) Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A I+ + + ++ S +L++RE + G T++EIAE+L +SVHTV + + Sbjct: 58 AVAHKISTLMNVNEEEDSDQNSLSQREKEIIGCVVRGMTNKEIAEQLFISVHTVITHRRN 117 Query: 212 ATVKL 216 T KL Sbjct: 118 ITRKL 122 >gi|218892898|ref|YP_002441767.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218773126|emb|CAW28938.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 243 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 117 GIAFPVRLGFHKNGY---VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-AR 172 G+ PV F +NG V F E L L + A C + L S+ A+ Sbjct: 123 GMQVPV---FGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQ 179 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE LQ G E+A L +S TV +L +A +L A + QA+A+A+R G Sbjct: 180 ALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239 Query: 233 YI 234 I Sbjct: 240 DI 241 >gi|218675092|ref|ZP_03524761.1| LuxR family transcriptional regulator [Rhizobium etli GR56] Length = 81 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 34/76 (44%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D +R+ A +T RE + G T+ EI L +S TVN ++ +A KL Sbjct: 5 DAARADHRRAGAMSAVTPREREIIGWMAAGKTAAEIGAILAISPITVNTHIANAKAKLGV 64 Query: 219 VNRIQAIAKAIRFGYI 234 +A A+R G I Sbjct: 65 FKETALVAAALRNGII 80 >gi|183980120|ref|YP_001848411.1| transcriptional regulatory protein [Mycobacterium marinum M] gi|183173446|gb|ACC38556.1| transcriptional regulatory protein [Mycobacterium marinum M] Length = 914 Score = 35.8 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 20/49 (40%), Positives = 28/49 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +LT +E+ +LA DGYT+ EIA L +S TV +L KL +R Sbjct: 855 DLTTQESHIARLARDGYTNAEIAGLLFISARTVEWHLSKIFAKLGVTSR 903 >gi|148273853|ref|YP_001223414.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147831783|emb|CAN02752.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 222 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T+RE+ L L G +++E+A LS +TV +Y+ S K+ +R QA+ + G+ Sbjct: 149 ITDRESEILALITQGKSNQEVAALTYLSPNTVKSYIRSIYRKIQVQSRTQAVIWGVGHGF 208 >gi|118471754|ref|YP_888483.1| transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118173041|gb|ABK73937.1| putative transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length = 873 Score = 35.8 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 18/48 (37%), Positives = 26/48 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +T RE L G + EIAE+L +SV TV ++ A +KL +R Sbjct: 807 VTAREREVAALVAQGLLNREIAERLTVSVRTVEGHIYRACIKLGVADR 854 >gi|86739636|ref|YP_480036.1| ATP-dependent transcription regulator LuxR [Frankia sp. CcI3] gi|86566498|gb|ABD10307.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Frankia sp. CcI3] Length = 1235 Score = 35.8 bits (81), Expect = 4.9, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 32/59 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A L++RE + L T+ EIA +L +SV+TV +L S KLD R A+ +A Sbjct: 1171 AGGRLSDRELAVLSYLPTMLTTTEIAAELFVSVNTVKTHLKSIYRKLDVPRRRDAVHRA 1229 >gi|23466193|ref|NP_696796.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|23326934|gb|AAN25432.1| response regulator of two-component system [Bifidobacterium longum NCC2705] Length = 231 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + Sbjct: 170 RLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTE 220 >gi|330955115|gb|EGH55375.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 199 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 23/50 (46%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Query: 173 NLTERETS-CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+ERET CL L G+T+ E AE+L L V+TV +Y A +KL R Sbjct: 133 TLSERETQVCLGLLA-GHTALEQAERLALKVNTVGSYQRRAAIKLGISGR 181 >gi|323494233|ref|ZP_08099345.1| two component LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323311396|gb|EGA64548.1| two component LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 209 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 4/110 (3%) Query: 129 NGYV---IFTSEFLMLANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQL 184 GYV + + E +M N+V C Q LE L +K L++RE+ L+ Sbjct: 99 KGYVLKDVGSEELVMAINQVAQGRSYLCPQASDRLLEQLNEKPQPKDDTLSKRESDVLKE 158 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++EIA+ L +SV TV + KL A + + A++ G + Sbjct: 159 IVNGSGNKEIADSLHISVRTVETHRLRIKKKLGATSTAALVKLALQKGLV 208 >gi|229522242|ref|ZP_04411658.1| nitrate/nitrite response regulator protein [Vibrio cholerae TM 11079-80] gi|229340227|gb|EEO05233.1| nitrate/nitrite response regulator protein [Vibrio cholerae TM 11079-80] Length = 207 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 147 LTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 197 >gi|227546539|ref|ZP_03976588.1| transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227212856|gb|EEI80735.1| transcriptional regulator [Bifidobacterium longum subsp. infantis ATCC 55813] Length = 231 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + Sbjct: 170 RLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTE 220 >gi|170782950|ref|YP_001711284.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157520|emb|CAQ02714.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 234 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 34/60 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T+RE+ L L G +++E+A LS +TV +Y+ S K+ +R QA+ + G+ Sbjct: 161 ITDRESEILALITQGKSNQEVAALTYLSPNTVKSYIRSIYRKIQVQSRTQAVIWGVGHGF 220 >gi|254285696|ref|ZP_04960659.1| nitrate/nitrite response regulator NarP [Vibrio cholerae AM-19226] gi|150424193|gb|EDN16131.1| nitrate/nitrite response regulator NarP [Vibrio cholerae AM-19226] Length = 208 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 147 LTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 197 >gi|149189038|ref|ZP_01867327.1| putative fimbrial protein Z, transcriptional regulator [Vibrio shilonii AK1] gi|148837224|gb|EDL54172.1| putative fimbrial protein Z, transcriptional regulator [Vibrio shilonii AK1] Length = 207 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 17/55 (30%), Positives = 31/55 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L++RE + L+L +G+ ++E+A +L +S TV+ Y K D N + + K Sbjct: 143 LSDRELTVLKLLTEGHRNKEVARRLNISDKTVSTYKKRVLEKFDVSNIMDLVPKV 197 >gi|254250258|ref|ZP_04943578.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] gi|124876759|gb|EAY66749.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] Length = 251 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 27/53 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L DGY+++EIA L L T+ +L KL NR + + Sbjct: 194 RLTYREEQIARLVRDGYSNKEIARDLALGPPTIKTHLMRMYRKLGVSNRTELV 246 >gi|194367747|ref|YP_002030357.1| two component LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194350551|gb|ACF53674.1| two component transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 221 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT ++ LQ+ G G +++IA L +S T+ A++ + KL NR QA+ A Sbjct: 148 RELTPQQFRVLQMLGAGRLNKQIAYDLNVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|260905348|ref|ZP_05913670.1| two-component system response regulator [Brevibacterium linens BL2] Length = 224 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G G +++EIA +L LS T ++ K+ A +R+ + A G Sbjct: 156 LTQREREVLALVGQGLSNDEIAAQLVLSPLTAKTHVSRIMSKVAARDRVHLVVLAYESGL 215 Query: 234 IC 235 + Sbjct: 216 VS 217 >gi|26248606|ref|NP_754646.1| transcriptional regulator RcsB [Escherichia coli CFT073] gi|91211511|ref|YP_541497.1| transcriptional regulator RcsB [Escherichia coli UTI89] gi|237704692|ref|ZP_04535173.1| transcriptional regulator RcsB [Escherichia sp. 3_2_53FAA] gi|332278625|ref|ZP_08391038.1| transcriptional regulator RcsB [Shigella sp. D9] gi|26109011|gb|AAN81214.1|AE016763_173 Capsular synthesis regulator component B [Escherichia coli CFT073] gi|91073085|gb|ABE07966.1| positive response regulator for colanic capsule biosynthesis [Escherichia coli UTI89] gi|226901058|gb|EEH87317.1| transcriptional regulator RcsB [Escherichia sp. 3_2_53FAA] gi|332100977|gb|EGJ04323.1| transcriptional regulator RcsB [Shigella sp. D9] Length = 231 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 149 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 208 Query: 217 DAVNRI 222 N I Sbjct: 209 GVENDI 214 >gi|85059558|ref|YP_455260.1| transcriptional regulator RcsB [Sodalis glossinidius str. 'morsitans'] gi|84780078|dbj|BAE74855.1| capsular synthesis regulator component B [Sodalis glossinidius str. 'morsitans'] Length = 216 Score = 35.8 bits (81), Expect = 4.9, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VAKLLERISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|298385304|ref|ZP_06994863.1| LuxR family transcriptional regulator GerE [Bacteroides sp. 1_1_14] gi|298262448|gb|EFI05313.1| LuxR family transcriptional regulator GerE [Bacteroides sp. 1_1_14] Length = 254 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ R+ L L G S++IA+ L +SV+TVN + L N A+ A+R Sbjct: 194 LSRRQLEILSLIAKGVPSKQIADNLNISVYTVNRHRQDILASLKVANTAAAVEIALRMNL 253 Query: 234 I 234 I Sbjct: 254 I 254 >gi|262191657|ref|ZP_06049834.1| nitrate/nitrite response regulator protein [Vibrio cholerae CT 5369-93] gi|262032446|gb|EEY51007.1| nitrate/nitrite response regulator protein [Vibrio cholerae CT 5369-93] Length = 201 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 140 LTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 190 >gi|284040806|ref|YP_003390736.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283820099|gb|ADB41937.1| two component transcriptional regulator, LuxR family [Spirosoma linguale DSM 74] Length = 231 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 8/77 (10%) Query: 149 AHGACY------QVITDF-LELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGL 200 ++G CY ++ +F +E+ R+ N LT+RE L++ +G T+ EIAEKL + Sbjct: 137 SNGGCYYSNGFMSLLKNFGIEIISDRTRDELNRLTQREREVLRMIANGNTANEIAEKLNI 196 Query: 201 SVHTVNAYLGSATVKLD 217 S T + KL+ Sbjct: 197 SYRTAVNHKAHIAKKLE 213 >gi|237707990|ref|ZP_04538471.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] gi|237725262|ref|ZP_04555743.1| transcriptional regulator [Bacteroides sp. D4] gi|229436528|gb|EEO46605.1| transcriptional regulator [Bacteroides dorei 5_1_36/D4] gi|229457976|gb|EEO63697.1| transcriptional regulator [Bacteroides sp. 9_1_42FAA] Length = 216 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 77/172 (44%), Gaps = 9/172 (5%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D PN ++ D LF ++ L I+ + +E I S LS ++ F G +F V Sbjct: 47 DHPNAVVVL--DYTLFDTSAEYLLILQERFKEAHFILFSDSLSEDFIRRMV-FGGTSFSV 103 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 + K+ +I E L A + + C ++ +K+ +LT E L Sbjct: 104 VM---KDAPMIEIEEGLRKAEQRL---QYICTRIAWQLQHKEEKKEKRGSSLTVTECEIL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G T++EIA + LSV+TV + + KL+ N +A A+R G + Sbjct: 158 KLMALGKTTKEIAAERFLSVYTVMTHRKNIFRKLEVNNVYEATKYALRAGIV 209 >gi|258654854|ref|YP_003204010.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558079|gb|ACV81021.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 209 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T+RE L+ DG+++ EIA++L +S TV + KL A +R A+A +RF Sbjct: 148 VTDRELQILRGMTDGFSNLEIAKQLFVSEDTVKTHARRLFRKLGANDRAHAVALGMRFEL 207 Query: 234 IC 235 + Sbjct: 208 VA 209 >gi|296140566|ref|YP_003647809.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296028700|gb|ADG79470.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 218 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%) Query: 165 KKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++R + A LT RE L+ G ++ EIAE L +S TV ++ KL +R Sbjct: 144 RRRPAPAELGTLTPREREVLEAVAAGRSNAEIAETLFVSEQTVKTHVSKVLQKLGLRDRA 203 Query: 223 QAIAKAIRFGYIC 235 QA+ A G + Sbjct: 204 QAVVYAYETGVVT 216 >gi|254521736|ref|ZP_05133791.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219719327|gb|EED37852.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 221 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 32/57 (56%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT ++ LQ+ G G +++IA L +S T+ A++ + KL NR QA+ A Sbjct: 148 RELTPQQFRVLQMLGAGRLNKQIAYDLNVSEATIKAHVTAILRKLGVTNRTQAVLMA 204 >gi|182414056|ref|YP_001819122.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177841270|gb|ACB75522.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 210 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 35/69 (50%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + SA + L++ E L G G + EEI ++LG++ +T + KL N + Sbjct: 138 RDQQSADKLLSDTERRVLSFIGHGLSDEEIGQRLGITRNTAQTHRSHILRKLRVGNSARL 197 Query: 225 IAKAIRFGY 233 A A+R G+ Sbjct: 198 AAYAVRHGF 206 >gi|152984552|ref|YP_001346614.1| transcriptional regulator NarL [Pseudomonas aeruginosa PA7] gi|150959710|gb|ABR81735.1| two-component response regulator NarL [Pseudomonas aeruginosa PA7] Length = 219 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS + LTERE L+ GY+++ IA KL ++ TV ++ KL +R++A Sbjct: 152 RSKSLDELTERERQILRQIAHGYSNKMIARKLDITEGTVKVHVKRVLHKLGMRSRVEAAV 211 Query: 227 KAI 229 A+ Sbjct: 212 WAV 214 >gi|258624788|ref|ZP_05719719.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM603] gi|258582950|gb|EEW07768.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM603] Length = 207 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 2/98 (2%) Query: 129 NGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY++ +E L + ++ A + + +L + S+ LTERE + Sbjct: 100 DGYLLKDTEPDQLVTLLKQAMQGEKAFSESVERYLLNRDEESNPFETLTEREMQIMSEVA 159 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 GY + +IA++L +S TV ++ S KLD +R A Sbjct: 160 KGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 197 >gi|257882181|ref|ZP_05661834.1| regulatory protein [Enterococcus faecium 1,231,502] gi|294621968|ref|ZP_06701113.1| DNA-binding response regulator [Enterococcus faecium U0317] gi|257817839|gb|EEV45167.1| regulatory protein [Enterococcus faecium 1,231,502] gi|291598447|gb|EFF29519.1| DNA-binding response regulator [Enterococcus faecium U0317] Length = 197 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 155 QVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++I F ++ K + S A + +ERE + ++ G ++EIA+ L LS TV Y+ Sbjct: 115 EIIETFTQMMKNKPTIDSHAYASFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYIS 174 Query: 211 SATVKLDAVNRIQ 223 KLD +R Q Sbjct: 175 QLLEKLDLRDRTQ 187 >gi|238761955|ref|ZP_04622928.1| Capsular synthesis regulator component B [Yersinia kristensenii ATCC 33638] gi|238699683|gb|EEP92427.1| Capsular synthesis regulator component B [Yersinia kristensenii ATCC 33638] Length = 215 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISANGYGDKRLSPKESEVLRLFAEGFLVTEIARKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|213693023|ref|YP_002323609.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524484|gb|ACJ53231.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459203|dbj|BAJ69824.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 231 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ RE ++L GYT +E+A +L +S+ TV ++ S KL NR + Sbjct: 170 RLSAREQEVMRLIARGYTYKEVAAELFISIKTVETHVSSVLRKLQLSNRTE 220 >gi|253701702|ref|YP_003022891.1| LuxR family transcriptional regulator [Geobacter sp. M21] gi|251776552|gb|ACT19133.1| two component transcriptional regulator, LuxR family [Geobacter sp. M21] Length = 223 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G ++ +IA + LS TV + + KLD ++++ + A R G Sbjct: 157 LTPREQQVLRLVAEGSSTRQIAAAIELSPKTVENHRTNLMKKLDVHSKMELVKYAARLGL 216 Query: 234 I 234 I Sbjct: 217 I 217 >gi|156933161|ref|YP_001437077.1| transcriptional regulator RcsB [Cronobacter sakazakii ATCC BAA-894] gi|156531415|gb|ABU76241.1| hypothetical protein ESA_00971 [Cronobacter sakazakii ATCC BAA-894] Length = 216 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|149925649|ref|ZP_01913913.1| regulatory protein, LuxR:Response regulator receiver [Limnobacter sp. MED105] gi|149825766|gb|EDM84974.1| regulatory protein, LuxR:Response regulator receiver [Limnobacter sp. MED105] Length = 210 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 34/57 (59%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + + LT ++ ++ G T +EIA+ LG+S TVNA++ A +L NR +A++ Sbjct: 128 SPKPLTIKQAQVMEQVSLGRTGKEIAKILGMSPDTVNAHIKEAFGRLGVQNRGEAVS 184 >gi|149203886|ref|ZP_01880855.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] gi|149143003|gb|EDM31045.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] Length = 202 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 35/74 (47%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 DFLE + + LT RET L G +++EIA L + TV +L + + KL A Sbjct: 127 DFLETGESEAEGPVRLTPRETDVLVGILHGKSNKEIARDLDIQEVTVKLHLKTLSRKLGA 186 Query: 219 VNRIQAIAKAIRFG 232 NR A A G Sbjct: 187 KNRTHAAMIARDMG 200 >gi|126433026|ref|YP_001068717.1| LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|126232826|gb|ABN96226.1| transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 544 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT RE L+L G T+ EIA L +S TV +LG+ KLD +R A A Sbjct: 478 AGAPSGLTTRELEVLRLLATGATNREIARTLVISEKTVARHLGNIFNKLDVSSRTAATAY 537 Query: 228 A 228 A Sbjct: 538 A 538 >gi|116049932|ref|YP_791259.1| putative two-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115585153|gb|ABJ11168.1| putative wo-component response regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 225 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 33/66 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A R LT RE +L G E+AE LG+S TV+ ++ KL + + + +A Sbjct: 143 AALRGLTRREFEIFRLLARGLALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAELVHRA 202 Query: 229 IRFGYI 234 I G + Sbjct: 203 IDSGVL 208 >gi|315644697|ref|ZP_07897828.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315279956|gb|EFU43255.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 217 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 30/54 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE +L G + EIA+ L ++ T Y+ + KL+ V+R QAI + Sbjct: 159 LTEREEGLARLMVQGLNNREIADMLHIAEGTARNYISNLYSKLEVVDRAQAIVR 212 >gi|303242888|ref|ZP_07329349.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302589563|gb|EFL59350.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 212 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 21/53 (39%), Positives = 28/53 (52%) Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ A G T++EIA+KL + V +L KL +RI AI K +R I Sbjct: 157 LQQAAIGKTNKEIADKLQMVQRNVEYHLSHIYKKLKVTSRIYAIRKGVRLNLI 209 >gi|302543904|ref|ZP_07296246.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461522|gb|EFL24615.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 218 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +LTE+E L L G+G T+ I E+L L+ T+ Y+ S KL R QA A Sbjct: 155 SLTEQERRILLLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAA 208 >gi|262403730|ref|ZP_06080288.1| nitrate/nitrite response regulator protein [Vibrio sp. RC586] gi|262350234|gb|EEY99369.1| nitrate/nitrite response regulator protein [Vibrio sp. RC586] Length = 202 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 141 LTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 191 >gi|256376796|ref|YP_003100456.1| hypothetical protein Amir_2675 [Actinosynnema mirum DSM 43827] gi|255921099|gb|ACU36610.1| Tetratricopeptide TPR_4 [Actinosynnema mirum DSM 43827] Length = 870 Score = 35.8 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 30/57 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT ET +L G T+ ++A++L LS HT + +L A KLD R + A R Sbjct: 813 LTGAETKVARLVALGRTNRQVADELHLSPHTASTHLRHAFAKLDVRTRTELARLAPR 869 >gi|238926539|ref|ZP_04658299.1| transcriptional regulator [Selenomonas flueggei ATCC 43531] gi|238885485|gb|EEQ49123.1| transcriptional regulator [Selenomonas flueggei ATCC 43531] Length = 209 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 4/76 (5%) Query: 163 LFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +F+ AA + LT RE GYT EIAE+L LSV TV+ + KL Sbjct: 133 MFRPAEEAADDPRSVLTAREREVFDELIHGYTITEIAEQLHLSVKTVDTHKKHIYEKLHC 192 Query: 219 VNRIQAIAKAIRFGYI 234 R + + A+R G + Sbjct: 193 SRRSELVTLALRNGLL 208 >gi|123441726|ref|YP_001005710.1| transcriptional regulator RcsB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088687|emb|CAL11489.1| probable two component response regulator component B [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318606417|emb|CBY27915.1| DNA-binding capsular synthesis response regulator RcsB [Yersinia enterocolitica subsp. palearctica Y11] Length = 215 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISANGYGDKRLSPKESEVLRLFAEGFLVTEIARKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|86742885|ref|YP_483285.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86569747|gb|ABD13556.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 201 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+ERE L+L G + +EIA + L+ TV +A KL+A NR A Sbjct: 141 LSEREAEILRLTASGASVKEIAHDMHLAAGTVRNLTSAAIKKLNARNRFDA 191 >gi|15597176|ref|NP_250670.1| response regulator EraR [Pseudomonas aeruginosa PAO1] gi|9947980|gb|AAG05368.1|AE004624_7 response regulator EraR [Pseudomonas aeruginosa PAO1] Length = 225 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 33/66 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A R LT RE +L G E+AE LG+S TV+ ++ KL + + + +A Sbjct: 143 AALRGLTRREFEIFRLLARGLALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAELVHRA 202 Query: 229 IRFGYI 234 I G + Sbjct: 203 IDSGVL 208 >gi|83952011|ref|ZP_00960743.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius nubinhibens ISM] gi|83837017|gb|EAP76314.1| autoinducer-binding transcriptional regulator, LuxR family protein [Roseovarius nubinhibens ISM] Length = 252 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 31/61 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S R+LT R+ L GDG T ++IA L L+ TV +L A L QA+ K Sbjct: 180 TSPTRSLTARQREVLGWVGDGKTVQDIALLLNLTPATVEKHLRLARDALSVETTAQAVLK 239 Query: 228 A 228 A Sbjct: 240 A 240 >gi|148549340|ref|YP_001269442.1| response regulator receiver protein [Pseudomonas putida F1] gi|148513398|gb|ABQ80258.1| response regulator receiver protein [Pseudomonas putida F1] Length = 127 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 24/45 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 R L RE C+ G+T++EIA G+S V +G A +KL Sbjct: 15 RGLAPRELQCILDVAQGFTTKEIARHFGISESGVEKRIGDAMLKL 59 >gi|238788611|ref|ZP_04632403.1| Capsular synthesis regulator component B [Yersinia frederiksenii ATCC 33641] gi|238723206|gb|EEQ14854.1| Capsular synthesis regulator component B [Yersinia frederiksenii ATCC 33641] Length = 215 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISANGYGDKRLSPKESEVLRLFAEGFLVTEIARKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|152977998|ref|YP_001343627.1| transcriptional regulator MalT [Actinobacillus succinogenes 130Z] gi|150839721|gb|ABR73692.1| regulatory protein LuxR [Actinobacillus succinogenes 130Z] Length = 928 Score = 35.8 bits (81), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 33/53 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE L L GY++E+I+++L ++ T+ ++ + K+ NR +AI+ Sbjct: 864 LTQREWQVLGLIYSGYSNEQISDELQVAATTIKTHIRNLYQKIGVTNRNEAIS 916 >gi|152966247|ref|YP_001362031.1| regulatory protein LuxR [Kineococcus radiotolerans SRS30216] gi|151360764|gb|ABS03767.1| regulatory protein LuxR [Kineococcus radiotolerans SRS30216] Length = 961 Score = 35.8 bits (81), Expect = 5.0, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 32/56 (57%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +S LT +E ++LA G T++EIA+++ LS TV ++L KL NR Q Sbjct: 891 ASLTSMLTAQELQIVRLAAQGLTNKEIADRVYLSHRTVGSHLYRVFPKLGVANRHQ 946 >gi|318060702|ref|ZP_07979425.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318075493|ref|ZP_07982825.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 222 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 30/52 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L G+G + EIAE++ ++ TV +++ KL+ NR+QA Sbjct: 162 RLTPREREVLSCLGEGLGNAEIAERIDVAEGTVKSHVSRLLAKLELRNRLQA 213 >gi|313111208|ref|ZP_07797029.1| putative wo-component response regulator [Pseudomonas aeruginosa 39016] gi|310883531|gb|EFQ42125.1| putative wo-component response regulator [Pseudomonas aeruginosa 39016] Length = 225 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 33/66 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A R LT RE +L G E+AE LG+S TV+ ++ KL + + + +A Sbjct: 143 AALRGLTRREFEIFRLLARGLALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAELVHRA 202 Query: 229 IRFGYI 234 I G + Sbjct: 203 IDSGVL 208 >gi|297580300|ref|ZP_06942227.1| nitrate/nitrite response regulator NarP [Vibrio cholerae RC385] gi|297535946|gb|EFH74780.1| nitrate/nitrite response regulator NarP [Vibrio cholerae RC385] Length = 207 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 146 TLTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 197 >gi|269977463|ref|ZP_06184435.1| putative Nitrate/nitrite response regulator-like protein [Mobiluncus mulieris 28-1] gi|307700357|ref|ZP_07637397.1| transcriptional regulator, LuxR family [Mobiluncus mulieris FB024-16] gi|269934379|gb|EEZ90941.1| putative Nitrate/nitrite response regulator-like protein [Mobiluncus mulieris 28-1] gi|307614568|gb|EFN93797.1| transcriptional regulator, LuxR family [Mobiluncus mulieris FB024-16] Length = 229 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +LT RE ++L GY +EIA +L +SV TV +++ + KL NR Sbjct: 168 SLTSREFEVMRLIARGYAYKEIASELYISVKTVESHVSAVLRKLQLSNR 216 >gi|264678731|ref|YP_003278638.1| transcriptional regulator, luxR family [Comamonas testosteroni CNB-2] gi|262209244|gb|ACY33342.1| transcriptional regulator, luxR family [Comamonas testosteroni CNB-2] Length = 239 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 28/62 (45%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L G EIA LGLS TV +L +L QAI AIR G Sbjct: 177 LSDREREVLAWTAAGRRQTEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRVAIRNGE 236 Query: 234 IC 235 I Sbjct: 237 IV 238 >gi|262173869|ref|ZP_06041546.1| nitrate/nitrite response regulator protein [Vibrio mimicus MB-451] gi|261891227|gb|EEY37214.1| nitrate/nitrite response regulator protein [Vibrio mimicus MB-451] Length = 200 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 140 LTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 190 >gi|256761402|ref|ZP_05501982.1| salavaricin two-component system response regulator [Enterococcus faecalis T3] gi|256959763|ref|ZP_05563934.1| salavaricin two-component system response regulator [Enterococcus faecalis Merz96] gi|293384949|ref|ZP_06630784.1| putative salavaricin two-component response regulator [Enterococcus faecalis R712] gi|293389220|ref|ZP_06633682.1| putative salavaricin two-component response regulator [Enterococcus faecalis S613] gi|307268210|ref|ZP_07549595.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307272442|ref|ZP_07553696.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307289677|ref|ZP_07569621.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|312905939|ref|ZP_07764952.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312909285|ref|ZP_07768141.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312953005|ref|ZP_07771858.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|256682653|gb|EEU22348.1| salavaricin two-component system response regulator [Enterococcus faecalis T3] gi|256950259|gb|EEU66891.1| salavaricin two-component system response regulator [Enterococcus faecalis Merz96] gi|291077767|gb|EFE15131.1| putative salavaricin two-component response regulator [Enterococcus faecalis R712] gi|291081384|gb|EFE18347.1| putative salavaricin two-component response regulator [Enterococcus faecalis S613] gi|306499491|gb|EFM68864.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306510904|gb|EFM79920.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306515479|gb|EFM84009.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310627934|gb|EFQ11217.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310629034|gb|EFQ12317.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|311290309|gb|EFQ68865.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|315153926|gb|EFT97942.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315166210|gb|EFU10227.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] Length = 202 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE L++ G IA K+ ++ T+ Y+ S KL+ + I ++ KAI G Sbjct: 137 ITPREKEVLRILSQGVKQSAIASKMNITDRTLRNYVYSINEKLETNSAIASVVKAIELGI 196 Query: 234 I 234 I Sbjct: 197 I 197 >gi|238751206|ref|ZP_04612700.1| Capsular synthesis regulator component B [Yersinia rohdei ATCC 43380] gi|238710480|gb|EEQ02704.1| Capsular synthesis regulator component B [Yersinia rohdei ATCC 43380] Length = 215 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISANGYGDKRLSPKESEVLRLFAEGFLVTEIARKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|269128686|ref|YP_003302056.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313644|gb|ACZ00019.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 225 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L G ++ EIA +L +S TV ++G KL +R+QA+ A G + Sbjct: 161 REREVLHLVARGLSNAEIAGRLHVSEATVKTHMGRILTKLGLRDRVQAVVFAYETGLV 218 >gi|218892061|ref|YP_002440928.1| putative two-component response regulator [Pseudomonas aeruginosa LESB58] gi|218772287|emb|CAW28069.1| probable two-component response regulator [Pseudomonas aeruginosa LESB58] Length = 223 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 33/66 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A R LT RE +L G E+AE LG+S TV+ ++ KL + + + +A Sbjct: 143 AALRGLTRREFEIFRLLARGLALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAELVHRA 202 Query: 229 IRFGYI 234 I G + Sbjct: 203 IDSGVL 208 >gi|71905906|ref|YP_283493.1| two component LuxR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71845527|gb|AAZ45023.1| two component transcriptional regulator, LuxR family [Dechloromonas aromatica RCB] Length = 221 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+R+ L L G ++ +IA++LGLS TV + + L +R QA+ R+G Sbjct: 155 GLTDRQGQVLALMVRGLSNRDIADQLGLSEGTVKIHATAVFKALGVSSRTQALVAVARYG 214 >gi|238794990|ref|ZP_04638586.1| Capsular synthesis regulator component B [Yersinia intermedia ATCC 29909] gi|238725693|gb|EEQ17251.1| Capsular synthesis regulator component B [Yersinia intermedia ATCC 29909] Length = 217 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISANGYGDKRLSPKESEVLRLFAEGFLVTEIARKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|119715261|ref|YP_922226.1| response regulator receiver [Nocardioides sp. JS614] gi|119535922|gb|ABL80539.1| response regulator receiver [Nocardioides sp. JS614] Length = 218 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 8/117 (6%) Query: 124 LGFHKNGYVIF--TSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAA-RNLT 175 LG +G+V+ E L+ A I + +VI +F L ++ AA LT Sbjct: 95 LGAGASGFVLKDDPPEQLIAAVRTIADGDALLSPTVTRRVIREFTRLRRQPPPAAVATLT 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE +L G ++ EI +L +S TV ++ KLD +R QAI A + G Sbjct: 155 GRELEVFRLITQGLSNAEIGRELFISDTTVKTHVTRLFQKLDLRDRAQAIVLAYQTG 211 >gi|15596333|ref|NP_249827.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107100589|ref|ZP_01364507.1| hypothetical protein PaerPA_01001614 [Pseudomonas aeruginosa PACS2] gi|254239506|ref|ZP_04932828.1| hypothetical protein PA2G_00120 [Pseudomonas aeruginosa 2192] gi|9947056|gb|AAG04525.1|AE004543_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126192884|gb|EAZ56947.1| hypothetical protein PA2G_00120 [Pseudomonas aeruginosa 2192] Length = 243 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 117 GIAFPVRLGFHKNGY---VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-AR 172 G+ PV F +NG V F E L L + A C + L S+ A+ Sbjct: 123 GMQVPV---FGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQ 179 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE LQ G E+A L +S TV +L +A +L A + QA+A+A+R G Sbjct: 180 ALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239 Query: 233 YI 234 I Sbjct: 240 DI 241 >gi|328886123|emb|CCA59362.1| putative LuxR-family transcriptional regulator [Streptomyces venezuelae ATCC 10712] Length = 271 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 25/50 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L G T+ A +LGL TV YL SA KL A R++ Sbjct: 210 LTPRERDVLTAVASGATNATAATRLGLRPETVKGYLRSAMRKLGAHTRLE 259 >gi|327485685|gb|AEA80091.1| Nitrate/nitrite response regulator protein [Vibrio cholerae LMA3894-4] Length = 201 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 140 LTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 190 >gi|302337080|ref|YP_003802286.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634265|gb|ADK79692.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 223 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 32/64 (50%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + S+ + LT RE L+ T+ EIAEK+ + T+ Y+ KL+ NR++ Sbjct: 156 LDEEDSSYKFLTRREKEVLKYLAMDMTNMEIAEKIHVGYQTIRNYISVIYSKLNVSNRME 215 Query: 224 AIAK 227 I K Sbjct: 216 VIKK 219 >gi|291303524|ref|YP_003514802.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572744|gb|ADD45709.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 217 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L+L GY +EIA +L +S+ TV ++ + KL NR + Sbjct: 156 QLTNREREVLRLLARGYAYKEIARELYISIKTVETHVSNVLRKLQMSNRYE 206 >gi|254390344|ref|ZP_05005561.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197704048|gb|EDY49860.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 221 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 30/58 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT++E L L G+G T+ I E+L L+ T+ Y+ S KL R QA A R Sbjct: 157 LTDQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAFVARM 214 >gi|161613013|ref|YP_001586978.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362377|gb|ABX66145.1| hypothetical protein SPAB_00719 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 216 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL N I Sbjct: 149 KRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDI 199 >gi|157149002|ref|YP_001456321.1| transcriptional regulator MalT [Citrobacter koseri ATCC BAA-895] gi|189028605|sp|A8AQX2|MALT_CITK8 RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|157086207|gb|ABV15885.1| hypothetical protein CKO_04840 [Citrobacter koseri ATCC BAA-895] Length = 901 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L GY++E+IA +L ++ T+ ++ + KL +R A+ A R Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQRL 893 >gi|120405339|ref|YP_955168.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119958157|gb|ABM15162.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 209 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V++ L + +R +A LT RE LQL +G T+ IA L +SV + ++ S Sbjct: 130 EVVSQIL-VRSRRRNALDALTPREHEVLQLMAEGKTNSAIAAALHMSVGSAEKHIASIFT 188 Query: 215 KLD 217 KLD Sbjct: 189 KLD 191 >gi|116249582|ref|YP_765420.1| hydrolase/GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254230|emb|CAK03845.1| putative hydrolase/GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 333 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 32/65 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R+ + LT E + L L +G + IAE+LG S TV L KL +R QA Sbjct: 267 RPRAVSEAGLTPAEAALLDLVAEGLDNRAIAERLGKSAKTVRNQLSVIFSKLGVHSRSQA 326 Query: 225 IAKAI 229 I A+ Sbjct: 327 IVVAL 331 >gi|62180843|ref|YP_217260.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128476|gb|AAX66179.1| response regulator (positive) in two-component regulatory system with RcsC (LuxR/UhpA familiy) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715319|gb|EFZ06890.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130600|gb|ADX18030.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 231 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 149 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 208 Query: 217 DAVNRI 222 N I Sbjct: 209 GVENDI 214 >gi|28898719|ref|NP_798324.1| response regulator [Vibrio parahaemolyticus RIMD 2210633] gi|260877284|ref|ZP_05889639.1| response regulator UvrY [Vibrio parahaemolyticus AN-5034] gi|269967056|ref|ZP_06181124.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] gi|28806937|dbj|BAC60208.1| transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|269828315|gb|EEZ82581.1| transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] gi|308090311|gb|EFO40006.1| response regulator UvrY [Vibrio parahaemolyticus AN-5034] Length = 214 Score = 35.8 bits (81), Expect = 5.1, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ERE + + G +I+E+L LS TVN+Y KLD ++ AIR Sbjct: 147 KDLSERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRH 206 Query: 232 GYI 234 G + Sbjct: 207 GML 209 >gi|330891531|gb|EGH24192.1| regulatory protein, LuxR [Pseudomonas syringae pv. mori str. 301020] Length = 199 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 2/51 (3%) Query: 172 RNLTERETS-CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + L+ERE C+ L G+T+ E AE+L L V+TV +Y A +KLD R Sbjct: 132 QTLSEREMQVCIGLLA-GHTAIEQAERLALKVNTVGSYQRRAAIKLDISGR 181 >gi|318057750|ref|ZP_07976473.1| two-component system response regulator [Streptomyces sp. SA3_actG] Length = 229 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +L ERE G G ++ EIA +L LSV TV A++ KL NR+Q Sbjct: 160 SLAEREREVALAVGRGASNAEIAAELYLSVPTVKAHVSRVLAKLHLNNRVQ 210 >gi|311898017|dbj|BAJ30425.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 104 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 30/58 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G G ++ EIA++L +S TV A+L +K A R +A A R Sbjct: 33 LTAREREVFDLLGKGLSNAEIADRLVVSGSTVKAHLARILIKTGAETRTRAALMAQRL 90 >gi|308177156|ref|YP_003916562.1| DNA binding domain-containing protein [Arthrobacter arilaitensis Re117] gi|307744619|emb|CBT75591.1| DNA binding domain-containing protein [Arthrobacter arilaitensis Re117] Length = 877 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 32/60 (53%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + R LT+RE +LA G ++ EIA+ G+S+ T+ +L KL NR + A Sbjct: 806 RPAWMRELTKREVQIAKLAIGGKSNAEIAKANGVSIRTIEGHLYQVYSKLQVRNRQELTA 865 >gi|296282114|ref|ZP_06860112.1| hypothetical protein CbatJ_00770 [Citromicrobium bathyomarinum JL354] Length = 253 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 20/43 (46%), Positives = 27/43 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LTE+E L+L G+ ++ IA +L SVHTVN L +A KL Sbjct: 9 LTEKEKQALRLILRGHDAKSIARELDRSVHTVNDRLRAARRKL 51 >gi|260768673|ref|ZP_05877607.1| BarA-associated response regulator UvrY [Vibrio furnissii CIP 102972] gi|260616703|gb|EEX41888.1| BarA-associated response regulator UvrY [Vibrio furnissii CIP 102972] gi|315180374|gb|ADT87288.1| transcriptional regulator, LuxR family [Vibrio furnissii NCTC 11218] Length = 188 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE + + G +I+E+L LS TVN+Y KLD ++ AIR G Sbjct: 122 DLSERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFAKLDISGDVELTHLAIRHG 181 Query: 233 YI 234 + Sbjct: 182 ML 183 >gi|269957500|ref|YP_003327289.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306181|gb|ACZ31731.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 223 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 9/101 (8%) Query: 137 EFLMLANEVIIEAHGACYQVITDFL--ELFKKRS----SAARN---LTERETSCLQLAGD 187 E + A + +G Q +T + E ++RS S +R LT RE L L Sbjct: 111 ETITTAIRQVAAGNGTIDQTLTRRILREFVQRRSLQPVSTSRGNGVLTSREQEILLLLAQ 170 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 G +++EIA L + + TV ++L KL +R+QA+ A Sbjct: 171 GMSNDEIARTLVVELSTVKSHLARMLPKLGVRSRLQAVVWA 211 >gi|261340633|ref|ZP_05968491.1| DNA-binding response regulator, LuxR family [Enterobacter cancerogenus ATCC 35316] gi|288317046|gb|EFC55984.1| DNA-binding response regulator, LuxR family [Enterobacter cancerogenus ATCC 35316] Length = 216 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|126735985|ref|ZP_01751729.1| transcriptional regulator, LuxR family protein [Roseobacter sp. CCS2] gi|126714542|gb|EBA11409.1| transcriptional regulator, LuxR family protein [Roseobacter sp. CCS2] Length = 202 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT+ E L + DG +EIA +L +S V L +A +KL A QA A A ++G Sbjct: 141 NLTKAELEALGMVKDGKRLKEIAFELSVSEGAVKQRLKNAKLKLGAKTGTQAAALANQYG 200 Query: 233 YI 234 I Sbjct: 201 LI 202 >gi|121585556|ref|ZP_01675352.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae 2740-80] gi|121725924|ref|ZP_01679224.1| nitrate/nitrite response regulator NarP [Vibrio cholerae V52] gi|147671981|ref|YP_001215452.1| nitrate/nitrite response regulator NarP [Vibrio cholerae O395] gi|153818114|ref|ZP_01970781.1| nitrate/nitrite response regulator NarP [Vibrio cholerae NCTC 8457] gi|153820709|ref|ZP_01973376.1| nitrate/nitrite response regulator NarP [Vibrio cholerae B33] gi|227812241|ref|YP_002812251.1| nitrate/nitrite response regulator NarP [Vibrio cholerae M66-2] gi|229506165|ref|ZP_04395674.1| nitrate/nitrite response regulator protein [Vibrio cholerae BX 330286] gi|229509977|ref|ZP_04399457.1| nitrate/nitrite response regulator protein [Vibrio cholerae B33] gi|229516462|ref|ZP_04405909.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC9] gi|229605704|ref|YP_002876408.1| nitrate/nitrite response regulator protein [Vibrio cholerae MJ-1236] gi|254849833|ref|ZP_05239183.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae MO10] gi|298499474|ref|ZP_07009280.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae MAK 757] gi|121550173|gb|EAX60187.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae 2740-80] gi|121631689|gb|EAX64057.1| nitrate/nitrite response regulator NarP [Vibrio cholerae V52] gi|126511382|gb|EAZ73976.1| nitrate/nitrite response regulator NarP [Vibrio cholerae NCTC 8457] gi|126521752|gb|EAZ78975.1| nitrate/nitrite response regulator NarP [Vibrio cholerae B33] gi|146314364|gb|ABQ18904.1| nitrate/nitrite response regulator NarP [Vibrio cholerae O395] gi|227011383|gb|ACP07594.1| nitrate/nitrite response regulator NarP [Vibrio cholerae M66-2] gi|227015263|gb|ACP11472.1| nitrate/nitrite response regulator NarP [Vibrio cholerae O395] gi|229346343|gb|EEO11314.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC9] gi|229352422|gb|EEO17362.1| nitrate/nitrite response regulator protein [Vibrio cholerae B33] gi|229356516|gb|EEO21434.1| nitrate/nitrite response regulator protein [Vibrio cholerae BX 330286] gi|229372190|gb|ACQ62612.1| nitrate/nitrite response regulator protein [Vibrio cholerae MJ-1236] gi|254845538|gb|EET23952.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae MO10] gi|297541455|gb|EFH77506.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae MAK 757] Length = 208 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 147 LTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 197 >gi|118592420|ref|ZP_01549812.1| transcriptional regulatory protein [Stappia aggregata IAM 12614] gi|118435078|gb|EAV41727.1| transcriptional regulatory protein [Stappia aggregata IAM 12614] Length = 241 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 26/53 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTERE L G ++IA LG+ TV +LG+ KL NR + A Sbjct: 182 LTERERDVALLIARGCFDKDIARVLGIGFATVRTHLGNCMTKLGCANRTELAA 234 >gi|255746558|ref|ZP_05420505.1| nitrate/nitrite response regulator protein [Vibrio cholera CIRS 101] gi|262158852|ref|ZP_06029965.1| nitrate/nitrite response regulator protein [Vibrio cholerae INDRE 91/1] gi|262168521|ref|ZP_06036217.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC27] gi|255736312|gb|EET91710.1| nitrate/nitrite response regulator protein [Vibrio cholera CIRS 101] gi|262023050|gb|EEY41755.1| nitrate/nitrite response regulator protein [Vibrio cholerae RC27] gi|262029425|gb|EEY48076.1| nitrate/nitrite response regulator protein [Vibrio cholerae INDRE 91/1] Length = 201 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 140 LTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 190 >gi|325298413|ref|YP_004258330.1| transcriptional regulator, LuxR family [Bacteroides salanitronis DSM 18170] gi|324317966|gb|ADY35857.1| transcriptional regulator, LuxR family [Bacteroides salanitronis DSM 18170] Length = 190 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 2/67 (2%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA-K 227 + A +L+ RE L L G ++EIAE+L +S+ TV ++ + T KL + + A+A Sbjct: 120 ATAHDLSPREIEVLVLLTKGCINKEIAERLNISLTTVISHRKNITEKL-GIKSVSALAIY 178 Query: 228 AIRFGYI 234 A+ GY+ Sbjct: 179 AVMHGYV 185 >gi|308178436|ref|YP_003917842.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307745899|emb|CBT76871.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 221 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 33/67 (49%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A R L+ER+ S +L G T+ +IA +S +V +L +LD NR+Q A Sbjct: 148 TAVRKLSERDRSLARLVAAGLTNSQIARIAHISEGSVKLHLARIMEELDVTNRVQLAVIA 207 Query: 229 IRFGYIC 235 G + Sbjct: 208 TESGLVS 214 >gi|320009300|gb|ADW04150.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 217 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 29/52 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L L G+G ++ + +++ +S TV Y+ KL+ NR+QA Sbjct: 155 KLTVRERDVLTLLGEGLSNADAGQRIHMSEATVKTYVSRILAKLECDNRVQA 206 >gi|302540578|ref|ZP_07292920.1| DNA-binding response regulator FixJ [Streptomyces hygroscopicus ATCC 53653] gi|302458196|gb|EFL21289.1| DNA-binding response regulator FixJ [Streptomyces himastatinicus ATCC 53653] Length = 212 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 31/60 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L LA DG +++IA +LG+S T++ + K A + + +R G Sbjct: 146 SLTSREREVLGLAVDGMANKQIAARLGISAKTIDVHRARIREKTGAQSMATLVRDVLRLG 205 >gi|254499358|ref|ZP_05112028.1| truncated LuxR family DNA-binding response regulator [Legionella drancourtii LLAP12] gi|254351423|gb|EET10288.1| truncated LuxR family DNA-binding response regulator [Legionella drancourtii LLAP12] Length = 56 Score = 35.8 bits (81), Expect = 5.2, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 29/48 (60%) Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + L GYT++ IA +LG+S HT+ YL + +K+ A ++ + I I Sbjct: 1 MHLTIKGYTAKRIARELGISHHTIEEYLLNIRIKMGAASKSELIEMTI 48 >gi|302879267|ref|YP_003847831.1| two component transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] gi|302582056|gb|ADL56067.1| two component transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] Length = 211 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 4/52 (7%) Query: 161 LELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 L LF+ S +A++ L++RE L+L G G T E+A+ L LSV TV+ Y Sbjct: 132 LLLFECGSDSAKSPHETLSDREYQVLRLIGSGKTVSEVAKLLSLSVKTVSTY 183 >gi|238753716|ref|ZP_04615077.1| Capsular synthesis regulator component B [Yersinia ruckeri ATCC 29473] gi|238707952|gb|EEQ00309.1| Capsular synthesis regulator component B [Yersinia ruckeri ATCC 29473] Length = 216 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISANGYGDKRLSPKESEVLRLFAEGFLVTEIARKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|209519372|ref|ZP_03268170.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209500186|gb|EEA00244.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 217 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 18/118 (15%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-------SSAARNL 174 VR G +GYV+ S L II+A GA T F R S L Sbjct: 103 VRAG--ASGYVLKDSPALE-----IIQAIGAVLDGKTFFSPELSARLIQASATQSPVERL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T RE L +G +S++IA++ LSV TV + + KLD I+ A+ I+F Sbjct: 156 TPRERDILDALAEGLSSKQIAQRNDLSVRTVETHRLNLKRKLD----IEGQAELIKFA 209 >gi|190573818|ref|YP_001971663.1| putative LuxR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011740|emb|CAQ45360.1| putative LuxR family transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 234 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 28/61 (45%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L+ G EIA LGLS TV +L A +L QA+ A R G Sbjct: 172 LSTREREVLRWVAAGRRQAEIAATLGLSTRTVENHLRHARQRLGVATTAQAVRAANRRGE 231 Query: 234 I 234 I Sbjct: 232 I 232 >gi|153211868|ref|ZP_01947715.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 1587] gi|153800895|ref|ZP_01955481.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-3] gi|153824326|ref|ZP_01976993.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-2] gi|153829689|ref|ZP_01982356.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 623-39] gi|229514128|ref|ZP_04403589.1| nitrate/nitrite response regulator protein [Vibrio cholerae TMA 21] gi|229528499|ref|ZP_04417890.1| nitrate/nitrite response regulator protein [Vibrio cholerae 12129(1)] gi|124116944|gb|EAY35764.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 1587] gi|124123605|gb|EAY42348.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-3] gi|148874810|gb|EDL72945.1| nitrate/nitrite response regulator NarP [Vibrio cholerae 623-39] gi|149741880|gb|EDM55909.1| nitrate/nitrite response regulator NarP [Vibrio cholerae MZO-2] gi|229334861|gb|EEO00347.1| nitrate/nitrite response regulator protein [Vibrio cholerae 12129(1)] gi|229348108|gb|EEO13066.1| nitrate/nitrite response regulator protein [Vibrio cholerae TMA 21] Length = 208 Score = 35.8 bits (81), Expect = 5.2, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 147 LTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 197 >gi|311899450|dbj|BAJ31858.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 223 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 3/62 (4%) Query: 159 DFLELFKKRSSAA---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + R +AA R LT RE L L +G+ ++ +A++LG++ +V + G+ +K Sbjct: 137 EVVRILLARHTAADPLRRLTPREREVLGLMAEGWNNQAVAQRLGVTEASVVKHAGNIFMK 196 Query: 216 LD 217 LD Sbjct: 197 LD 198 >gi|307296697|ref|ZP_07576516.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] gi|306877826|gb|EFN09051.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] Length = 225 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 82/205 (40%), Gaps = 31/205 (15%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLL----PI-----------IWQSIQEETVI 98 +H+ DL + ++ I Y D++ F + L PI W ++Q + Sbjct: 20 VHHVDLKPA-VRSVHIVDYPQDWVERFQARRLYASDPIHRASHRTNVGFAWSAVQSIISL 78 Query: 99 ESSGQ--LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156 ++ + L+ E GL G P + NG + F M A E++ Q+ Sbjct: 79 TAADRSILAEAYEAGLGD--GFTVPAHIPGELNG----SCSFAMAAGEMLDHRQLPFVQL 132 Query: 157 ITDF-LELFKKRS------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + F E +K S S +LTER+ C+ L G T EI++ LG+ TV ++ Sbjct: 133 VGSFAFEAARKISRIHAPQSECPSLTERQAECVALVARGKTDWEISQILGIGQETVIQHV 192 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 A + R +A+ G I Sbjct: 193 KDARDRYGVTKRTLLAIRALFEGQI 217 >gi|227875828|ref|ZP_03993954.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|306819109|ref|ZP_07452823.1| two component system response regulator [Mobiluncus mulieris ATCC 35239] gi|227843576|gb|EEJ53759.1| transcriptional regulator [Mobiluncus mulieris ATCC 35243] gi|304648085|gb|EFM45396.1| two component system response regulator [Mobiluncus mulieris ATCC 35239] Length = 229 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 29/49 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +LT RE ++L GY +EIA +L +SV TV +++ + KL NR Sbjct: 168 SLTSREFEVMRLIARGYAYKEIASELYISVKTVESHVSAVLRKLQLSNR 216 >gi|209863940|gb|ACI88885.1| AlnR6 two component response regulator [Streptomyces sp. CM020] Length = 218 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G+++ EIA + L+ TV +++ K+ A +R+QA+ A G Sbjct: 155 LTTREREVLTAIATGWSNTEIANRFSLAESTVKSHVSHILAKIGARDRVQAVIFAYDMGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|227818586|ref|YP_002822557.1| CitB, response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain CitB [Sinorhizobium fredii NGR234] gi|36958841|gb|AAQ87266.1| two-component response regulator [Sinorhizobium fredii NGR234] gi|227337585|gb|ACP21804.1| putative CitB, response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain CitB [Sinorhizobium fredii NGR234] Length = 217 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 27/51 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L+L G +++++A L L T+ ++ KLD NR +A Sbjct: 153 LTTREREVLKLVASGMSNKQVARNLNLHEKTIKHHMTQIMAKLDVANRTEA 203 >gi|50119655|ref|YP_048822.1| virulence regulator [Pectobacterium atrosepticum SCRI1043] gi|49610181|emb|CAG73623.1| virulence regulator [Pectobacterium atrosepticum SCRI1043] Length = 116 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 1/99 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 H G ++ TS F +A + + G C E + +S L ER+ LQL Sbjct: 8 HVIGVILKTSPFDSIAQALKTVSMGMVCLPDDGVVYEGWSVDNSVKGKLRERQHEVLQLI 67 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G ++++I+ L +S TV ++L S +L+ NR QA Sbjct: 68 VSGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQA 106 >gi|317405260|gb|EFV85592.1| LuxR family Two component transcriptional regulator [Achromobacter xylosoxidans C54] Length = 210 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A L+ RE L+L +G + EIAE+L LS +TV ++ KL +R +AI Sbjct: 143 ADAGETLSPREGQILRLVAEGLGNREIAEQLHLSRYTVECHIKHIYRKLAVSSRTRAIHT 202 Query: 228 AIRFGYI 234 A G + Sbjct: 203 ARSRGLL 209 >gi|300088598|ref|YP_003759120.1| MalT-like ATP-dependent transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528331|gb|ADJ26799.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 904 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L+L G ++ +I E++ L++ TV + KL R AIA+A FG Sbjct: 844 LSQRELEILRLMAQGLSNRQICERVFLALDTVKGHNRKIFDKLQVQRRTGAIARAREFGL 903 Query: 234 I 234 + Sbjct: 904 L 904 >gi|297162504|gb|ADI12216.1| LuxR family two-component response regulator [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R + L+ RE L L G+G T+ EI ++L LS TV ++ KL R+QA Sbjct: 142 QPRDESLAGLSTREREILTLIGEGMTNREIGKRLYLSEKTVKNHISRLLSKLGVERRVQA 201 >gi|296389611|ref|ZP_06879086.1| putative two-component response regulator [Pseudomonas aeruginosa PAb1] Length = 225 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 33/66 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A R LT RE +L G E+AE LG+S TV+ ++ KL + + + +A Sbjct: 143 AALRGLTRREFEIFRLLARGQALREVAEHLGVSAKTVSNHVSLLKQKLQVSTQAELVHRA 202 Query: 229 IRFGYI 234 I G + Sbjct: 203 IDSGVL 208 >gi|296103858|ref|YP_003614004.1| two-component system, NarL family, captular synthesis response regulator RcsB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058317|gb|ADF63055.1| two-component system, NarL family, captular synthesis response regulator RcsB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295098108|emb|CBK87198.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 216 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 35/66 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|257083562|ref|ZP_05577923.1| salavaricin two-component system response regulator [Enterococcus faecalis Fly1] gi|256991592|gb|EEU78894.1| salavaricin two-component system response regulator [Enterococcus faecalis Fly1] Length = 202 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE L++ G IA K+ ++ T+ Y+ S KL+ + I ++ KAI G Sbjct: 137 ITPREKEVLRILSQGVKQSAIASKMNITDRTLRNYVYSINEKLETNSAIASVVKAIELGI 196 Query: 234 I 234 I Sbjct: 197 I 197 >gi|254477132|ref|ZP_05090518.1| two component transcriptional regulator, LuxR family [Ruegeria sp. R11] gi|214031375|gb|EEB72210.1| two component transcriptional regulator, LuxR family [Ruegeria sp. R11] Length = 204 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 78/201 (38%), Gaps = 30/201 (14%) Query: 37 TINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEET 96 T+ SA+D P I + YDL L +N +P + T Sbjct: 27 TVTSAVDLPGALGEIADNGPYDL----------------VLLDYN---MPGMNGLAGLGT 67 Query: 97 VIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156 +E++G V + G P + G G++ T L N V + G Y Sbjct: 68 ALEANGGKGVAILSGSAPARTAKEALDAGAI--GFIPKTMGAQSLLNAVRFMSAGEIYVP 125 Query: 157 ITDFLELFKKRSSA-----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + EL +K + A A L+ RE L G +++EIA +L L T+ ++ + Sbjct: 126 V----ELMRKEAEAPSHPLADKLSPREIEVLDGLCRGLSNKEIARELELQEVTIKLHVRT 181 Query: 212 ATVKLDAVNRIQAIAKAIRFG 232 KLDA NR QA A G Sbjct: 182 LCRKLDAKNRTQAALTAKEAG 202 >gi|167766736|ref|ZP_02438789.1| hypothetical protein CLOSS21_01242 [Clostridium sp. SS2/1] gi|167711490|gb|EDS22069.1| hypothetical protein CLOSS21_01242 [Clostridium sp. SS2/1] Length = 222 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +T+ E ++L G G +++EI+ +L LS TV YL + KLD +R Q Sbjct: 157 ITDAEWEIIKLVGRGMSNKEISTELSLSEGTVRNYLSTILSKLDLRDRTQ 206 >gi|114328502|ref|YP_745659.1| LuxR family transcriptional regulator [Granulibacter bethesdensis CGDNIH1] gi|114316676|gb|ABI62736.1| transcriptional regulator, LuxR family [Granulibacter bethesdensis CGDNIH1] Length = 306 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 29/58 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +T RE L G G + +IA+ LGLS TVN +L K+ NR A A ++ Sbjct: 245 VTAREAEVLLWIGRGKQNRDIADILGLSPRTVNKHLEQIYTKIGVENRAAAAAVVMKL 302 >gi|111225726|ref|YP_716520.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111153258|emb|CAJ65009.1| putative two-component system response regulator [Frankia alni ACN14a] Length = 203 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ + A +LG+S TV ++ + KL NR++ A+R G Sbjct: 139 RLTAREIEVLRLIAKGLSARDAAARLGVSHRTVQNHVHNVLGKLQLRNRVELTRFALREG 198 Query: 233 Y 233 Y Sbjct: 199 Y 199 >gi|90407707|ref|ZP_01215886.1| nitrate/nitrite response regulator protein NarP [Psychromonas sp. CNPT3] gi|90311176|gb|EAS39282.1| nitrate/nitrite response regulator protein NarP [Psychromonas sp. CNPT3] Length = 211 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 31/52 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 NLT+RE LQ G +++EI+ L +S TV ++ S KL A +R++A Sbjct: 151 NLTKRERQILQEIAKGQSNKEISINLHISEGTVKVHVKSLLKKLQAKSRVEA 202 >gi|50083538|ref|YP_045048.1| response regulator [Acinetobacter sp. ADP1] gi|49529514|emb|CAG67226.1| response regulator (Global antibiotic and cyanide control protein, LuxR/UhpA family) [Acinetobacter sp. ADP1] Length = 211 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + + +++EIA+KL +SV TVN Y KL + ++ AIR+G Sbjct: 149 LSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLSIDSDVKLTHLAIRYGL 208 Query: 234 I 234 I Sbjct: 209 I 209 >gi|332306646|ref|YP_004434497.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173975|gb|AEE23229.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 213 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 2/66 (3%) Query: 161 LELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +E ++++ AA+ LT + LQL DG +++IA +LG+S T+ ++ + KL Sbjct: 137 IEDSQEQAFAAKLAQLTPHQLKVLQLMADGLLNKQIAYELGVSESTIKQHVSAVLHKLGF 196 Query: 219 VNRIQA 224 NR QA Sbjct: 197 NNRTQA 202 >gi|311067417|ref|YP_003972340.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310867934|gb|ADP31409.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 215 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G +++EIA L +S TV ++ + KLD +R QA A++ Sbjct: 149 QLTRREKDVLMEIASGKSNKEIAASLFISEKTVKTHVSNLLAKLDVADRTQAALFAVK 206 >gi|307325986|ref|ZP_07605185.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306888478|gb|EFN19465.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 230 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE + L G G +++EIA +L +S T ++ VKL +R Q + A G Sbjct: 164 LTEREREVMALVGMGLSNQEIARRLVVSPLTAKTHVSRTMVKLGVRDRAQLVVLAYESGL 223 Query: 234 I 234 + Sbjct: 224 V 224 >gi|258620778|ref|ZP_05715813.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM573] gi|258586976|gb|EEW11690.1| nitrate/nitrite response regulator NarP [Vibrio mimicus VM573] Length = 207 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 147 LTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 197 >gi|238785703|ref|ZP_04629678.1| Capsular synthesis regulator component B [Yersinia bercovieri ATCC 43970] gi|238797458|ref|ZP_04640957.1| Capsular synthesis regulator component B [Yersinia mollaretii ATCC 43969] gi|238713388|gb|EEQ05425.1| Capsular synthesis regulator component B [Yersinia bercovieri ATCC 43970] gi|238718729|gb|EEQ10546.1| Capsular synthesis regulator component B [Yersinia mollaretii ATCC 43969] Length = 218 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISANGYGDKRLSPKESEVLRLFAEGFLVTEIARKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|154485008|ref|ZP_02027456.1| hypothetical protein EUBVEN_02726 [Eubacterium ventriosum ATCC 27560] gi|149733961|gb|EDM50080.1| hypothetical protein EUBVEN_02726 [Eubacterium ventriosum ATCC 27560] Length = 424 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 30/54 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A NLT E + LA G+T++EI+E L ++ TV +L KL+ NR Q Sbjct: 364 VADNLTTTEFTIAMLANRGWTNKEISEYLEITPRTVKQHLTCVFNKLNIENRKQ 417 >gi|119963933|ref|YP_949838.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119950792|gb|ABM09703.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 230 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 31/69 (44%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R LT RET L +G ++ EIA K LS TV ++ KL +R+Q + Sbjct: 156 RDPLLDELTPRETEILTTIAEGLSNAEIAHKFFLSEATVKTHVRRILSKLQLRDRVQVVV 215 Query: 227 KAIRFGYIC 235 A G + Sbjct: 216 YAYETGLVV 224 >gi|39998319|ref|NP_954270.1| LuxR family DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39985265|gb|AAR36620.1| DNA-binding response regulator, LuxR family [Geobacter sulfurreducens PCA] gi|298507253|gb|ADI85976.1| helix-turn-helix transcriptional response regulator, LuxR family [Geobacter sulfurreducens KN400] Length = 229 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +++ +G TS +IAE L L++ TV + + KL ++++ + A R G Sbjct: 159 LTPREQQVMRMIVEGATSRQIAESLELTLKTVENHRTNLMRKLQVHSKLELVRYAARLGL 218 Query: 234 I 234 I Sbjct: 219 I 219 >gi|88855696|ref|ZP_01130359.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88815020|gb|EAR24879.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 225 Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 27/50 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L G ++ EIA +L ++V TV +L S KL NR++ Sbjct: 158 LTAREEEVLATVARGLSNSEIASELHITVSTVKTHLASLMTKLGVRNRVE 207 >gi|323495672|ref|ZP_08100743.1| response regulator [Vibrio sinaloensis DSM 21326] gi|323319307|gb|EGA72247.1| response regulator [Vibrio sinaloensis DSM 21326] Length = 214 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE + + G +I+E+L LS TVN+Y KLD ++ AIR G Sbjct: 148 DLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLDISGDVELTHLAIRHG 207 Query: 233 YI 234 + Sbjct: 208 ML 209 >gi|315181638|gb|ADT88551.1| response regulator [Vibrio furnissii NCTC 11218] Length = 204 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 6/112 (5%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA-HG--ACYQVITDFLELFKKRSSAAR 172 A I VR G +GY++ +E L E++ EA HG A V+ +L + + Sbjct: 84 ADIEAIVRAG--ADGYLLKDTEPDQLV-ELLKEAVHGNKAYSDVVAAYLRDRQDQQDVFD 140 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L GY +++IA++L +S TV ++ S KL +R A Sbjct: 141 LLTDREAQILGEVAKGYRNKQIADRLFISESTVKVHMKSLLKKLRVPSRTAA 192 >gi|313106105|ref|ZP_07792362.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310878864|gb|EFQ37458.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 243 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 7/122 (5%) Query: 117 GIAFPVRLGFHKNGY---VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-AR 172 G+ PV F +NG V F E L L + A C + L S+ A+ Sbjct: 123 GMQVPV---FGRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQ 179 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE LQ G E+A L +S TV +L +A +L A + QA+A+A+R G Sbjct: 180 ALSEREREVLQWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLG 239 Query: 233 YI 234 I Sbjct: 240 DI 241 >gi|302532515|ref|ZP_07284857.1| two-component system regulator [Streptomyces sp. C] gi|302441410|gb|EFL13226.1| two-component system regulator [Streptomyces sp. C] Length = 259 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 32/63 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++EIA +L ++ TV +L KL +R QA+A A G Sbjct: 188 RLTNREQDVLRLVARGLGNDEIAAELVVTEATVKTHLHRTMTKLGLRSRAQAVAVAYEAG 247 Query: 233 YIC 235 + Sbjct: 248 LVV 250 >gi|312196093|ref|YP_004016154.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227429|gb|ADP80284.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 220 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LTERE L L G ++ EIA ++ ++ TV ++ KL+ +R+QA+ A Sbjct: 153 QTLTEREREVLVLIARGLSNTEIAARIYVTEGTVKTHVSRLLAKLNLRDRVQAVVYAYES 212 Query: 232 GYI 234 G + Sbjct: 213 GLV 215 >gi|300361177|ref|ZP_07057354.1| two component system response regulator [Lactobacillus gasseri JV-V03] gi|300353796|gb|EFJ69667.1| two component system response regulator [Lactobacillus gasseri JV-V03] Length = 227 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++ ++ E +Q G G +++EIA KL LS TV Y+ KLD +R Q A++ Sbjct: 157 TKDFSKSEWCVIQQVGLGLSNKEIAAKLFLSEGTVRNYISKILEKLDLRDRTQLAIWAVQ 216 Query: 231 FG 232 G Sbjct: 217 TG 218 >gi|198276206|ref|ZP_03208737.1| hypothetical protein BACPLE_02397 [Bacteroides plebeius DSM 17135] gi|198271018|gb|EDY95288.1| hypothetical protein BACPLE_02397 [Bacteroides plebeius DSM 17135] Length = 213 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 3/107 (2%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETSCLQLAGD 187 +V+ L N+ + + +G C V D L +K + LT+ E L+ Sbjct: 100 HVLMKDAPLAEVNQCLRDVNGGCQFVCGKAKDLLREEEKEQNRMAPLTQTEKEILRAMAL 159 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA + LS++TV + + KL+ N +AI A+R G + Sbjct: 160 GKSTKEIAAERFLSIYTVATHRKNIFRKLEVNNAHEAIRYALRAGIV 206 >gi|148240645|ref|YP_001226032.1| two-component system response regulator [Synechococcus sp. WH 7803] gi|147849184|emb|CAK24735.1| Two-component system response regulator [Synechococcus sp. WH 7803] Length = 237 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 33/69 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E + T RE+S LQL +G ++EIA +L S+ V Y+ +K +R Sbjct: 164 EALPAQEPVQHTFTPRESSVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSR 223 Query: 222 IQAIAKAIR 230 + + A++ Sbjct: 224 TELVRYALQ 232 >gi|172062324|ref|YP_001809975.1| two component LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171994841|gb|ACB65759.1| two component transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 223 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 28/50 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 A R LT RE ++L G GYT EIA +L S T+++ SA KL V Sbjct: 148 ATRALTTREIEVVRLFGAGYTVGEIAAQLHRSKQTISSQKSSAMKKLGIV 197 >gi|88855530|ref|ZP_01130194.1| two-component response regulator [marine actinobacterium PHSC20C1] gi|88815437|gb|EAR25295.1| two-component response regulator [marine actinobacterium PHSC20C1] Length = 226 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L G ++ EIAE+ LS++++ ++ S + +R A+ I G+ Sbjct: 144 LTEREAEILALITQGLSNLEIAERTNLSINSIKTHIRSGYRSIGVSSRTNAVLWGIEHGF 203 >gi|228985616|ref|ZP_04145769.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774011|gb|EEM22424.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 73 Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 2 KVESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAV 61 Query: 226 AKAIR 230 A+R Sbjct: 62 IYAVR 66 >gi|229822479|ref|YP_002884005.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229568392|gb|ACQ82243.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 222 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 31/63 (49%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T+RE L G +++EIA +L LS T Y+ KLDA +R Q + A G Sbjct: 156 RITDREREVLAAVARGLSNDEIAGELFLSPATARTYVSRLLTKLDARDRAQLVVLAYEAG 215 Query: 233 YIC 235 + Sbjct: 216 LVV 218 >gi|226951745|ref|ZP_03822209.1| response regulator [Acinetobacter sp. ATCC 27244] gi|294648987|ref|ZP_06726435.1| response regulator [Acinetobacter haemolyticus ATCC 19194] gi|226837535|gb|EEH69918.1| response regulator [Acinetobacter sp. ATCC 27244] gi|292825122|gb|EFF83877.1| response regulator [Acinetobacter haemolyticus ATCC 19194] Length = 227 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + + +++EIA+KL +SV TVN Y KL + ++ AIR+G Sbjct: 165 LSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLAIDSDVKLTHLAIRYGL 224 Query: 234 I 234 I Sbjct: 225 I 225 >gi|213028580|ref|ZP_03343027.1| transcriptional regulator RcsB [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 197 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL N I Sbjct: 130 KRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDI 180 >gi|220926479|ref|YP_002501781.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219951086|gb|ACL61478.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 509 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G ++ EI +KLG++ +TV ++ K+D +R A+ A G Sbjct: 435 DLTPRELEVLGLMCRGLSNAEIVKKLGVTHNTVRNHIARIYAKIDVHDRAGAVVWARERG 494 Query: 233 Y 233 + Sbjct: 495 F 495 >gi|115299627|gb|ABI93788.1| GdmRII [Streptomyces hygroscopicus] gi|323701037|gb|ADY00179.1| GdmRII [Streptomyces autolyticus] gi|325070964|gb|ADY75591.1| GdmRII [Streptomyces autolyticus] Length = 927 Score = 35.8 bits (81), Expect = 5.4, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 28/58 (48%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K + LT E LA GYT+ EIA KL ++ TV +L KLD +R Q Sbjct: 857 KADAGIERLTHSERRVASLAAMGYTNREIAGKLYVTASTVEQHLTRVFRKLDIKHREQ 914 >gi|94309557|ref|YP_582767.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353409|gb|ABF07498.1| Two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 231 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 24/64 (37%), Positives = 34/64 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ RE L L G T+ EIAE L LS TV ++ ++ KL +R QA+ +A Sbjct: 167 APPLSAREIEILSLVSKGLTNREIAEVLSLSKLTVECHIRNSYKKLAVHSRTQAVFEARA 226 Query: 231 FGYI 234 G + Sbjct: 227 SGLL 230 >gi|219667264|ref|YP_002457699.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537524|gb|ACL19263.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 212 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L G+T+ EIA L +S TV+ + + KL+ ++++ A++ G Sbjct: 150 LTEREREILILLAKGHTNNEIAPILNISAKTVDYHRSNLMKKLNLHSKVELTKYALKRGL 209 Query: 234 I 234 I Sbjct: 210 I 210 >gi|83647005|ref|YP_435440.1| transcriptional regulator MalT [Hahella chejuensis KCTC 2396] gi|83635048|gb|ABC31015.1| ATP-dependent transcriptional regulator [Hahella chejuensis KCTC 2396] Length = 907 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 32/51 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT +E L+L G+G ++E IAE+L ++ TV +++ KL +R++A Sbjct: 838 LTPKEWEVLRLIGEGSSNERIAERLYVAPSTVRSHIKHVYQKLGISSRVEA 888 >gi|71281032|ref|YP_269953.1| response regulator [Colwellia psychrerythraea 34H] gi|71146772|gb|AAZ27245.1| DNA-binding response regulator [Colwellia psychrerythraea 34H] Length = 214 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + + G I+E L LS T+N+Y KLD N ++ AIR+G Sbjct: 149 LSDRELQIMIMITRGDKVPAISEHLNLSTKTINSYRYRMFEKLDVSNDVELTHLAIRYGM 208 Query: 234 I 234 + Sbjct: 209 L 209 >gi|22126847|ref|NP_670270.1| transcriptional regulator RcsB [Yersinia pestis KIM 10] gi|45440758|ref|NP_992297.1| transcriptional regulator RcsB [Yersinia pestis biovar Microtus str. 91001] gi|51595602|ref|YP_069793.1| transcriptional regulator RcsB [Yersinia pseudotuberculosis IP 32953] gi|108806929|ref|YP_650845.1| transcriptional regulator RcsB [Yersinia pestis Antiqua] gi|108812919|ref|YP_648686.1| transcriptional regulator RcsB [Yersinia pestis Nepal516] gi|145599744|ref|YP_001163820.1| transcriptional regulator RcsB [Yersinia pestis Pestoides F] gi|149366791|ref|ZP_01888825.1| probable two component response regulator component B [Yersinia pestis CA88-4125] gi|153948306|ref|YP_001401728.1| RcsB family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|162421319|ref|YP_001605840.1| transcriptional regulator RcsB [Yersinia pestis Angola] gi|165924467|ref|ZP_02220299.1| capsular synthesis regulator component B [Yersinia pestis biovar Orientalis str. F1991016] gi|165938377|ref|ZP_02226935.1| capsular synthesis regulator component B [Yersinia pestis biovar Orientalis str. IP275] gi|166009763|ref|ZP_02230661.1| capsular synthesis regulator component B [Yersinia pestis biovar Antiqua str. E1979001] gi|166211471|ref|ZP_02237506.1| capsular synthesis regulator component B [Yersinia pestis biovar Antiqua str. B42003004] gi|167400279|ref|ZP_02305792.1| capsular synthesis regulator component B [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419625|ref|ZP_02311378.1| capsular synthesis regulator component B [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424315|ref|ZP_02316068.1| capsular synthesis regulator component B [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469185|ref|ZP_02333889.1| capsular synthesis regulator component B [Yersinia pestis FV-1] gi|170025067|ref|YP_001721572.1| transcriptional regulator RcsB [Yersinia pseudotuberculosis YPIII] gi|186894666|ref|YP_001871778.1| transcriptional regulator RcsB [Yersinia pseudotuberculosis PB1/+] gi|218928377|ref|YP_002346252.1| transcriptional regulator RcsB [Yersinia pestis CO92] gi|229841163|ref|ZP_04461322.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843268|ref|ZP_04463414.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Yersinia pestis biovar Orientalis str. India 195] gi|229894115|ref|ZP_04509301.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Yersinia pestis Pestoides A] gi|229903348|ref|ZP_04518461.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Yersinia pestis Nepal516] gi|270487158|ref|ZP_06204232.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294503232|ref|YP_003567294.1| probable two component response regulator component B [Yersinia pestis Z176003] gi|21959878|gb|AAM86521.1|AE013898_4 positive response regulator for colanic capsule biosynthesis [Yersinia pestis KIM 10] gi|45435616|gb|AAS61174.1| probable two component response regulator component B [Yersinia pestis biovar Microtus str. 91001] gi|51588884|emb|CAH20498.1| capsule synthesis two component response regulator component B [Yersinia pseudotuberculosis IP 32953] gi|108776567|gb|ABG19086.1| two component response regulator component B [Yersinia pestis Nepal516] gi|108778842|gb|ABG12900.1| two component response regulator component B [Yersinia pestis Antiqua] gi|115346988|emb|CAL19879.1| probable two component response regulator component B [Yersinia pestis CO92] gi|145211440|gb|ABP40847.1| two component response regulator component B [Yersinia pestis Pestoides F] gi|149291165|gb|EDM41240.1| probable two component response regulator component B [Yersinia pestis CA88-4125] gi|152959801|gb|ABS47262.1| capsular synthesis regulator component B [Yersinia pseudotuberculosis IP 31758] gi|162354134|gb|ABX88082.1| capsular synthesis regulator component B [Yersinia pestis Angola] gi|165913755|gb|EDR32374.1| capsular synthesis regulator component B [Yersinia pestis biovar Orientalis str. IP275] gi|165923527|gb|EDR40659.1| capsular synthesis regulator component B [Yersinia pestis biovar Orientalis str. F1991016] gi|165991159|gb|EDR43460.1| capsular synthesis regulator component B [Yersinia pestis biovar Antiqua str. E1979001] gi|166207242|gb|EDR51722.1| capsular synthesis regulator component B [Yersinia pestis biovar Antiqua str. B42003004] gi|166962366|gb|EDR58387.1| capsular synthesis regulator component B [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050228|gb|EDR61636.1| capsular synthesis regulator component B [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057164|gb|EDR66927.1| capsular synthesis regulator component B [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169751601|gb|ACA69119.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186697692|gb|ACC88321.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229679118|gb|EEO75221.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Yersinia pestis Nepal516] gi|229689615|gb|EEO81676.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Yersinia pestis biovar Orientalis str. India 195] gi|229697529|gb|EEO87576.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704000|gb|EEO91013.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Yersinia pestis Pestoides A] gi|262361271|gb|ACY57992.1| probable two component response regulator component B [Yersinia pestis D106004] gi|262365192|gb|ACY61749.1| probable two component response regulator component B [Yersinia pestis D182038] gi|270335662|gb|EFA46439.1| response regulator receiver domain protein [Yersinia pestis KIM D27] gi|294353691|gb|ADE64032.1| probable two component response regulator component B [Yersinia pestis Z176003] gi|320015939|gb|ADV99510.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 217 Score = 35.8 bits (81), Expect = 5.4, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISANGYGDKRLSPKESEVLRLFAEGFLVTEIARKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|328542441|ref|YP_004302550.1| Response regulator containing a chemotaxis protein CheY domain and an HTH DNA-binding domain [polymorphum gilvum SL003B-26A1] gi|326412188|gb|ADZ69251.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Polymorphum gilvum SL003B-26A1] Length = 216 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 4/83 (4%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-NLTERETSCLQLA 185 GY++ + N V A G Y +V +E S R LTERE LQ Sbjct: 108 GYLLKDISAREMINAVTAIADGGYYFSSKVGPTLMEARPSCSGVDRYGLTEREREVLQGV 167 Query: 186 GDGYTSEEIAEKLGLSVHTVNAY 208 G ++EIA+ LG+SV TV ++ Sbjct: 168 ARGQANKEIAKALGISVRTVESH 190 >gi|294054984|ref|YP_003548642.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293614317|gb|ADE54472.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 215 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 57/136 (41%), Gaps = 14/136 (10%) Query: 112 LLPFAGIAFP------VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITD 159 +L F+G P ++ G H G+V + L + I + G Y ++ D Sbjct: 78 VLIFSGYQTPGLVRELLQAGAH--GFVEKAAPLTELRKGIEIVSSGGSYFGPEVALLLRD 135 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + K + S LT+RE LQL + ++ EIA KL +SV T + + KLD Sbjct: 136 AMADPKSKESGINILTKRERQILQLIAESNSTREIASKLDISVKTAENHRTNLMRKLDLH 195 Query: 220 NRIQAIAKAIRFGYIC 235 + AI G I Sbjct: 196 DVASLTRYAINHGLIV 211 >gi|284041917|ref|YP_003392257.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946138|gb|ADB48882.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 963 Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 30/53 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT E +LA +G ++ +IAE+L +S HTV ++ A KL +R + A Sbjct: 906 LTPSERRVAELAAEGLSNPQIAERLVISRHTVATHVSHALAKLGLRSRFELAA 958 >gi|238760199|ref|ZP_04621345.1| Capsular synthesis regulator component B [Yersinia aldovae ATCC 35236] gi|238701578|gb|EEP94149.1| Capsular synthesis regulator component B [Yersinia aldovae ATCC 35236] Length = 217 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISANGYGDKRLSPKESEVLRLFAEGFLVTEIARKLNRSIKTISSQKKSAMLKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|167583991|ref|ZP_02376379.1| Autoinducer-binding domain protein [Burkholderia ubonensis Bu] Length = 275 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 31/49 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +LTE E + L+ DG TS E+A L +SV TVN ++ + +K++ N+ Sbjct: 213 HLTEMEKTILRWTVDGKTSGELATILEVSVRTVNFHVQNILMKMNTCNK 261 >gi|157467980|gb|ABV57378.1| ExpR [Erwinia chrysanthemi] Length = 250 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 1/91 (1%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVH 203 ++I AH + + + S NL ++RE L A G T +EIA LG++ Sbjct: 150 LLISAHEKLTSLYREMSKNKNNSKSQEPNLFSQRENEILYWASMGKTYQEIALILGITTS 209 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++G+ KL +N AI + I Sbjct: 210 TVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240 >gi|219850507|ref|YP_002464940.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544766|gb|ACL26504.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 213 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 22/36 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +L+ERE L L GYT+ EIA +L LS TV Y Sbjct: 149 SLSEREREVLVLVARGYTAAEIAGQLNLSPKTVETY 184 >gi|124266219|ref|YP_001020223.1| response regulator protein [Methylibium petroleiphilum PM1] gi|124258994|gb|ABM93988.1| response regulator protein [Methylibium petroleiphilum PM1] Length = 217 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query: 167 RSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R A + L + RE+ L DG +S++IAE+L LSV TV + + KL + + I Sbjct: 143 RGQAPKPLVSHRESEILACLADGLSSKQIAERLDLSVRTVETHRQNIKRKLGIEGQAELI 202 Query: 226 AKAIRFG 232 A+ G Sbjct: 203 KYAVEHG 209 >gi|333024259|ref|ZP_08452323.1| putative LuxR family transcriptional regulator [Streptomyces sp. Tu6071] gi|332744111|gb|EGJ74552.1| putative LuxR family transcriptional regulator [Streptomyces sp. Tu6071] Length = 1006 Score = 35.8 bits (81), Expect = 5.5, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE+ L+L G+++ IAE L +S T + ++ KL R +A A A R Sbjct: 940 LTARESEVLRLVAAGHSNRRIAETLYISPKTASVHVSRIIAKLGVTGRGEAAAVAHRL 997 >gi|328883448|emb|CCA56687.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 220 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA+ L ++ T+ ++ VKL +R QA A G Sbjct: 155 ELTERETEVLVLIAQGLSNAEIADHLVVAESTIKTHVSRILVKLALRDRTQAAVFAYEAG 214 Query: 233 YI 234 + Sbjct: 215 LV 216 >gi|300717613|ref|YP_003742416.1| Capsular synthesis regulator component B [Erwinia billingiae Eb661] gi|299063449|emb|CAX60569.1| Capsular synthesis regulator component B [Erwinia billingiae Eb661] Length = 216 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVENDI 199 >gi|260779032|ref|ZP_05887924.1| BarA-associated response regulator UvrY [Vibrio coralliilyticus ATCC BAA-450] gi|260605196|gb|EEX31491.1| BarA-associated response regulator UvrY [Vibrio coralliilyticus ATCC BAA-450] Length = 214 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE + + G +I+E+L LS TVN+Y KLD ++ AIR G Sbjct: 148 DLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFNKLDISGDVELTHLAIRHG 207 Query: 233 YI 234 + Sbjct: 208 ML 209 >gi|229073471|ref|ZP_04206602.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228709645|gb|EEL61688.1| DNA-binding response regulator [Bacillus cereus F65185] Length = 131 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 60 KVESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAV 119 Query: 226 AKAIR 230 A+R Sbjct: 120 IYAVR 124 >gi|254974814|ref|ZP_05271286.1| two-component response regulator [Clostridium difficile QCD-66c26] gi|255092202|ref|ZP_05321680.1| two-component response regulator [Clostridium difficile CIP 107932] gi|255313941|ref|ZP_05355524.1| two-component response regulator [Clostridium difficile QCD-76w55] gi|255516621|ref|ZP_05384297.1| two-component response regulator [Clostridium difficile QCD-97b34] gi|255649721|ref|ZP_05396623.1| two-component response regulator [Clostridium difficile QCD-37x79] gi|306519831|ref|ZP_07406178.1| two-component response regulator [Clostridium difficile QCD-32g58] Length = 214 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 38/66 (57%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +K S NLTE+E S ++L +G ++EI+++L LS T+ + + KL+ +R Q Sbjct: 144 QKHISDMYNLTEKEISIIRLIANGLNNKEISQELFLSEGTIKNNITNILGKLELRDRTQL 203 Query: 225 IAKAIR 230 + A + Sbjct: 204 VIFAFK 209 >gi|171914538|ref|ZP_02930008.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 236 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 32/65 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A L+ RET LQL +G ++E AE L +SV TV + S KL+ + AI Sbjct: 153 APSRLSSRETEVLQLIAEGKANKETAEILHISVKTVEKHRQSLMEKLNIHDTASLTRHAI 212 Query: 230 RFGYI 234 G I Sbjct: 213 ATGII 217 >gi|171849138|pdb|3CLO|A Chain A, Crystal Structure Of Putative Transcriptional Regulator Containing A Luxr Dna Binding Domain (Np_811094.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.04 A Resolution gi|171849139|pdb|3CLO|B Chain B, Crystal Structure Of Putative Transcriptional Regulator Containing A Luxr Dna Binding Domain (Np_811094.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.04 A Resolution gi|171849140|pdb|3CLO|C Chain C, Crystal Structure Of Putative Transcriptional Regulator Containing A Luxr Dna Binding Domain (Np_811094.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.04 A Resolution Length = 258 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 168 SSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S RN L+ERE L+ G +S+EIA L +SV+TVN + + KL N I+A Sbjct: 191 SEEHRNILSEREKEILRCIRKGLSSKEIAATLYISVNTVNRHRQNILEKLSVGNSIEACR 250 Query: 227 KA 228 A Sbjct: 251 AA 252 >gi|194365838|ref|YP_002028448.1| two component LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348642|gb|ACF51765.1| two component transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 224 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 170 AAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 AAR +L+ + L L +G +++IA++LG+ + TV A++ +L NR QAI Sbjct: 146 AARLASLSAHQYKVLSLVAEGLLNKQIADRLGVQLRTVKAHMTRIMERLGVRNRAQAI 203 >gi|118581123|ref|YP_902373.1| two component LuxR family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118503833|gb|ABL00316.1| two component transcriptional regulator, LuxR family [Pelobacter propionicus DSM 2379] Length = 208 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +L+ RE +QL +G TS EIAE L LS ++ Y VKL V I A+ K Sbjct: 144 SLSLREREVIQLVVEGRTSAEIAELLSLSPKSIETYRSRLMVKL-GVGNIPALVK 197 >gi|309791230|ref|ZP_07685762.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] gi|308226792|gb|EFO80488.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] Length = 218 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+L G +++EIA+ L +S T +L + KL +R Q A+R Sbjct: 151 QLTPREMDVLRLVAKGMSNKEIADTLVISEKTTKTHLSNILSKLHLADRTQVAIYALR 208 >gi|298249444|ref|ZP_06973248.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547448|gb|EFH81315.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 236 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 30/53 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L+L G T+ E+AE+L +S TV +L + +L +R QA+ Sbjct: 175 RLTRREQEILRLVATGATNREVAERLVISEGTVKNHLANLFSRLGLRDRTQAV 227 >gi|293610045|ref|ZP_06692346.1| two component transcriptional regulator [Acinetobacter sp. SH024] gi|292827277|gb|EFF85641.1| two component transcriptional regulator [Acinetobacter sp. SH024] Length = 211 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +L+ERE + + +++EIA+KL +SV TVN Y KL + + Sbjct: 138 LSDTQQSPFDSLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLAIDSDV 197 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 198 KLTHLAIRYGLI 209 >gi|269929059|ref|YP_003321380.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269788416|gb|ACZ40558.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 214 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L G ++ EIAE L +S TV ++ KL +R+QA+ AI+ G+ Sbjct: 143 LSTREVEILDCMVRGLSNREIAEALFISEQTVKNHMSRLFHKLHVRDRLQAVLFAIQHGW 202 Query: 234 I 234 + Sbjct: 203 V 203 >gi|294813824|ref|ZP_06772467.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326442243|ref|ZP_08216977.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326423|gb|EFG08066.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 205 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 30/58 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT++E L L G+G T+ I E+L L+ T+ Y+ S KL R QA A R Sbjct: 141 LTDQERRILDLIGEGLTNRAIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAFVARM 198 >gi|259907955|ref|YP_002648311.1| transcriptional regulator RcsB [Erwinia pyrifoliae Ep1/96] gi|224963577|emb|CAX55067.1| RcsB protein [Erwinia pyrifoliae Ep1/96] gi|283477835|emb|CAY73751.1| activator of exoploysaccharide synthesis [Erwinia pyrifoliae DSM 12163] gi|310768137|gb|ADP13087.1| transcriptional regulator RcsB [Erwinia sp. Ejp617] Length = 215 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|254422920|ref|ZP_05036638.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190409|gb|EDX85373.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 214 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 12/136 (8%) Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA---NEVI--IEAHGACYQVITDFLELF 164 G LLPF ++ L G+ + ++L+ E+I IEA A I +EL Sbjct: 73 GQLLPFIFLSARSELEDRIQGHTLGADDYLVKPFHPRELIAKIEAQLARADRIRFQIELA 132 Query: 165 KK-------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + R + LT E GYT+++I L +S TV +L S KL+ Sbjct: 133 LQNAHPRLGREKSPLPLTPAEEKVFWEVIQGYTNKKIGTHLFISPRTVQTHLSSILSKLE 192 Query: 218 AVNRIQAIAKAIRFGY 233 NR Q I A GY Sbjct: 193 LENRSQLIRYAFENGY 208 >gi|166366585|ref|YP_001658858.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166088958|dbj|BAG03666.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 237 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ EIA++L +++ TV ++ + KL +R QA A+R G Sbjct: 176 LTAREREILDLIVAGCSNAEIAKRLYITIGTVKTHVRNVLNKLSVDDRTQAAVLALRSGL 235 Query: 234 I 234 + Sbjct: 236 V 236 >gi|163737655|ref|ZP_02145072.1| transcriptional regulator, LuxR family/sensory box protein [Phaeobacter gallaeciensis BS107] gi|163740771|ref|ZP_02148164.1| transcriptional regulator, LuxR family/sensory box protein [Phaeobacter gallaeciensis 2.10] gi|161385762|gb|EDQ10138.1| transcriptional regulator, LuxR family/sensory box protein [Phaeobacter gallaeciensis 2.10] gi|161389181|gb|EDQ13533.1| transcriptional regulator, LuxR family/sensory box protein [Phaeobacter gallaeciensis BS107] Length = 210 Score = 35.8 bits (81), Expect = 5.6, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 26/54 (48%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 RS + LT RE L +G TS+EIA LGLS TV + K+ N Sbjct: 135 RSRPYQPLTRREREVYSLLCEGKTSKEIARSLGLSYRTVEVHRARLLKKMGVSN 188 >gi|291560732|emb|CBL39532.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [butyrate-producing bacterium SSC/2] Length = 222 Score = 35.4 bits (80), Expect = 5.6, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +T+ E ++L G G +++EI+ +L LS TV YL + KLD +R Q Sbjct: 157 ITDAEWEIIKLVGRGMSNKEISTELSLSEGTVRNYLSTILSKLDLRDRTQ 206 >gi|257890986|ref|ZP_05670639.1| response regulator [Enterococcus faecium 1,231,410] gi|257827346|gb|EEV53972.1| response regulator [Enterococcus faecium 1,231,410] Length = 202 Score = 35.4 bits (80), Expect = 5.6, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 4/73 (5%) Query: 155 QVITDFLELFKKR----SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++I F ++ K + S A + +ERE + ++ G ++EIA+ L LS TV Y+ Sbjct: 127 EIIETFTQMMKNKPTIDSHAYASFSERELAIIKEVAAGKNNKEIADALYLSDGTVRNYIS 186 Query: 211 SATVKLDAVNRIQ 223 KLD +R Q Sbjct: 187 QLLEKLDLRDRTQ 199 >gi|291300526|ref|YP_003511804.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569746|gb|ADD42711.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 35.4 bits (80), Expect = 5.6, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 1/76 (1%) Query: 158 TDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 TD E K R+ LT+RE+ L L G ++ EIA +L +S TV ++ + K Sbjct: 144 TDTSEPAKPPRTDLPDGLTKRESEVLTLIAAGRSNAEIARQLYISEATVKTHINNLFTKA 203 Query: 217 DAVNRIQAIAKAIRFG 232 +R QA+ A R G Sbjct: 204 ALRDRAQAVTYAYRHG 219 >gi|256389850|ref|YP_003111414.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356076|gb|ACU69573.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 229 Score = 35.4 bits (80), Expect = 5.6, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 35/64 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +A +L+ RE L+L G+++ EIA+KL + TV +++ K +R QA+ A Sbjct: 160 SADDLSPREADVLRLIAAGHSNREIAKKLFVGEATVKSHINRIFTKTGCRDRAQAVQYAF 219 Query: 230 RFGY 233 GY Sbjct: 220 THGY 223 >gi|169634637|ref|YP_001708373.1| response regulator [Acinetobacter baumannii SDF] gi|169797497|ref|YP_001715290.1| response regulator [Acinetobacter baumannii AYE] gi|184156579|ref|YP_001844918.1| response regulator [Acinetobacter baumannii ACICU] gi|213155689|ref|YP_002317734.1| response regulator [Acinetobacter baumannii AB0057] gi|215484933|ref|YP_002327172.1| response regulator [Acinetobacter baumannii AB307-0294] gi|260551084|ref|ZP_05825288.1| response regulator [Acinetobacter sp. RUH2624] gi|260556389|ref|ZP_05828608.1| response regulator [Acinetobacter baumannii ATCC 19606] gi|301346538|ref|ZP_07227279.1| response regulator [Acinetobacter baumannii AB056] gi|301512072|ref|ZP_07237309.1| response regulator [Acinetobacter baumannii AB058] gi|301594838|ref|ZP_07239846.1| response regulator [Acinetobacter baumannii AB059] gi|169150424|emb|CAM88321.1| response regulator (Global antibiotic and cyanide control protein, LuxR/UhpA family) [Acinetobacter baumannii AYE] gi|169153429|emb|CAP02566.1| response regulator (Global antibiotic and cyanide control protein, LuxR/UhpA family) [Acinetobacter baumannii] gi|183208173|gb|ACC55571.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Acinetobacter baumannii ACICU] gi|193076104|gb|ABO10711.2| response regulator [Acinetobacter baumannii ATCC 17978] gi|213054849|gb|ACJ39751.1| response regulator [Acinetobacter baumannii AB0057] gi|213987818|gb|ACJ58117.1| response regulator [Acinetobacter baumannii AB307-0294] gi|260405851|gb|EEW99339.1| response regulator [Acinetobacter sp. RUH2624] gi|260410444|gb|EEX03743.1| response regulator [Acinetobacter baumannii ATCC 19606] gi|322506466|gb|ADX01920.1| gacA [Acinetobacter baumannii 1656-2] gi|323516345|gb|ADX90726.1| response regulator [Acinetobacter baumannii TCDC-AB0715] Length = 211 Score = 35.4 bits (80), Expect = 5.6, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +L+ERE + + +++EIA+KL +SV TVN Y KL + + Sbjct: 138 LSDTQQSPFDSLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDV 197 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 198 KLTHLAIRYGLI 209 >gi|163802887|ref|ZP_02196775.1| excinuclease ABC subunit A [Vibrio sp. AND4] gi|159173294|gb|EDP58120.1| excinuclease ABC subunit A [Vibrio sp. AND4] Length = 214 Score = 35.4 bits (80), Expect = 5.6, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 34/61 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A +LT RE L+ G ++ ++AE L +S T+ ++L K+ NR+QAIA Sbjct: 148 APATVDLTIRELQVLRCLQAGTSNIQMAEDLYVSESTIKSHLSQIFKKISVKNRVQAIAW 207 Query: 228 A 228 A Sbjct: 208 A 208 >gi|119715554|ref|YP_922519.1| response regulator receiver [Nocardioides sp. JS614] gi|119536215|gb|ABL80832.1| response regulator receiver [Nocardioides sp. JS614] Length = 225 Score = 35.4 bits (80), Expect = 5.6, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 27/50 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT+RE G G ++ EIA L LSV TV A++ KL NR+Q Sbjct: 165 LTDRERDVALAVGRGLSNAEIAGDLYLSVPTVKAHVSRLFDKLQVTNRVQ 214 >gi|325274520|ref|ZP_08140584.1| LuxR family DNA-binding response regulator [Pseudomonas sp. TJI-51] gi|324100337|gb|EGB98119.1| LuxR family DNA-binding response regulator [Pseudomonas sp. TJI-51] Length = 205 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 7/76 (9%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 QV T L+LF R + +RE LQL G +++EIA+ + LS TV+ Y Sbjct: 133 QVTTSDLQLF-------RQVNDRELMVLQLFAQGRSNKEIAKGMFLSSKTVSTYKKRLMQ 185 Query: 215 KLDAVNRIQAIAKAIR 230 KL + I A R Sbjct: 186 KLQVSTLVDLIEMAKR 201 >gi|302036473|ref|YP_003796795.1| LuxR family response regulator [Candidatus Nitrospira defluvii] gi|300604537|emb|CBK40869.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 214 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L A G +++EIA++L +S+ TV +L KL R++A+ Sbjct: 156 LTDREHEMLACAAAGRSNKEIADQLCVSLDTVKTHLHHIYQKLRVSGRVEAV 207 >gi|302036405|ref|YP_003796727.1| LuxR family response regulator [Candidatus Nitrospira defluvii] gi|300604469|emb|CBK40801.1| Response regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 234 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 4/60 (6%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE LQ G EIAE+L LS+ TV+ Y +KL ++ A+ IR+ Sbjct: 173 TLSDREIEVLQWIAQGRRLTEIAEQLNLSIKTVSTYRSRLLIKLG----MRTTAELIRYA 228 >gi|261493304|ref|ZP_05989830.1| maltose operon transcriptional regulator [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261310948|gb|EEY12125.1| maltose operon transcriptional regulator [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 873 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 33/53 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE L L GY++E+I+++L ++ T+ ++ + K+ NR +AI+ Sbjct: 809 LTQREWQVLGLIYSGYSNEQISDELQVAATTIKTHIRNLYQKIGVTNRNEAIS 861 >gi|284041353|ref|YP_003391283.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283820646|gb|ADB42484.1| two component transcriptional regulator, LuxR family [Spirosoma linguale DSM 74] Length = 215 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT RET L L G T++++A +L +S V + S +K N I A+ Sbjct: 153 NLTPRETEVLTLMSQGLTTQQMATQLFVSAKAVEFHRSSLLMKFGVPNTALLIKTAMEMQ 212 Query: 233 YI 234 YI Sbjct: 213 YI 214 >gi|222106434|ref|YP_002547225.1| two component response regulator [Agrobacterium vitis S4] gi|221737613|gb|ACM38509.1| two component response regulator [Agrobacterium vitis S4] Length = 779 Score = 35.4 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query: 169 SAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +AAR LT++E L + +G +++ IA G+S TV +L + KL R +AIA Sbjct: 712 AAARTRLTQQELKILTMLAEGASNKLIARNSGISEPTVKFHLKNVYRKLGCSRRHEAIAA 771 Query: 228 AIRFGYI 234 A G++ Sbjct: 772 AKALGWV 778 >gi|254360679|ref|ZP_04976828.1| maltose operon transcriptional regulator [Mannheimia haemolytica PHL213] gi|153091219|gb|EDN73224.1| maltose operon transcriptional regulator [Mannheimia haemolytica PHL213] Length = 908 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 33/53 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE L L GY++E+I+++L ++ T+ ++ + K+ NR +AI+ Sbjct: 844 LTQREWQVLGLIYSGYSNEQISDELQVAATTIKTHIRNLYQKIGVTNRNEAIS 896 >gi|126739386|ref|ZP_01755079.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. SK209-2-6] gi|126719486|gb|EBA16195.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. SK209-2-6] Length = 203 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 44/103 (42%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G++ T L N V + G Y + E A L+ RE L+ G Sbjct: 99 GFIPKTMGAQSLLNAVRFMSSGEVYMPVELMREEEATDHPLAEKLSPRELEVLESLCKGL 158 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +++EIA +L L T+ ++ + KLDA NR QA A G Sbjct: 159 SNKEIARELDLQEVTIKLHVRTLCRKLDAKNRTQAALTAKEAG 201 >gi|108797407|ref|YP_637604.1| LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119866491|ref|YP_936443.1| LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|108767826|gb|ABG06548.1| transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119692580|gb|ABL89653.1| transcriptional regulator, LuxR family [Mycobacterium sp. KMS] Length = 544 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 32/61 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT RE L+L G T+ EIA L +S TV +LG+ KLD +R A A Sbjct: 478 AGAPSGLTTRELEVLRLLATGATNREIAHTLVISEKTVARHLGNIFNKLDVSSRTAATAY 537 Query: 228 A 228 A Sbjct: 538 A 538 >gi|52426127|ref|YP_089264.1| transcriptional regulator MalT [Mannheimia succiniciproducens MBEL55E] gi|52308179|gb|AAU38679.1| MalT protein [Mannheimia succiniciproducens MBEL55E] Length = 908 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 33/53 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE L L GY++E+I+++L ++ T+ ++ + K+ NR +AI+ Sbjct: 844 LTQREWQVLGLIYSGYSNEQISDELQVAATTIKTHIRNLYQKIGVTNRNEAIS 896 >gi|28378203|ref|NP_785095.1| response regulator [Lactobacillus plantarum WCFS1] gi|254556410|ref|YP_003062827.1| response regulator [Lactobacillus plantarum JDM1] gi|28271038|emb|CAD63943.1| response regulator [Lactobacillus plantarum WCFS1] gi|254045337|gb|ACT62130.1| response regulator [Lactobacillus plantarum JDM1] Length = 217 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L GY+++EIA KL +S TV A+ + KL NR I AI Sbjct: 155 LSKREREVFPLVALGYSNKEIAAKLFISTKTVEAHKANIMRKLALNNRADLIRYAIHHHL 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|320160659|ref|YP_004173883.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994512|dbj|BAJ63283.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 215 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 56/113 (49%), Gaps = 6/113 (5%) Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACYQVITDF----LELFKKRSSAARNLTERETSCL 182 GY++ + E L+ A E + + GA + +T + ++ + LTERE L Sbjct: 101 TGYLLKDASPEELVKAIEQVAQGEGALHPAVTRYVLGQIKNMPDEPAPEEELTEREKEVL 160 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 Q GY++ EIA L +S TV+ ++ KL+ +R QA+ A++ G + Sbjct: 161 QFMAQGYSNAEIARLLVVSNATVHTHVSRILSKLNVSSRTQAVLYALKRGIVS 213 >gi|307328810|ref|ZP_07607980.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306885475|gb|EFN16491.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 214 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 11/104 (10%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELF-------KKRSSAARNLTERET 179 G+++ + LA+ V + A G ++ T L F + RS A LT RE Sbjct: 101 GFLLKDTSPRELADAVRVLARGEAMLSPRITTKLLAAFATGAVAPQARSRMA-ELTARER 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 G+++ +IA L +S TV +L KLDA NR Q Sbjct: 160 EVAVAVAQGHSNSQIATDLFVSQSTVKVHLSRIMTKLDAANRTQ 203 >gi|301052287|ref|YP_003790498.1| transcriptional regulator [Bacillus anthracis CI] gi|300374456|gb|ADK03360.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 213 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 142 KVESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAV 201 Query: 226 AKAIR 230 A+R Sbjct: 202 IYAVR 206 >gi|298250270|ref|ZP_06974074.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548274|gb|EFH82141.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 596 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 31/53 (58%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T+RE + L G ++ EIA KL +S TV ++ + KL+ +R QA+AK Sbjct: 524 TQRENEVINLLLQGASNREIAAKLIISEGTVKKHVANICGKLEVKSRTQALAK 576 >gi|297559902|ref|YP_003678876.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844350|gb|ADH66370.1| transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 999 Score = 35.4 bits (80), Expect = 5.7, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RET +L G T+ +IAE+L ++ T + ++ + KLD NR A Sbjct: 939 LTARETEVARLLVVGSTNAQIAERLFITAKTASVHVSNILAKLDVPNRAAA 989 >gi|289577636|ref|YP_003476263.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Thermoanaerobacter italicus Ab9] gi|289527349|gb|ADD01701.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Thermoanaerobacter italicus Ab9] Length = 114 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 27/108 (25%), Positives = 51/108 (47%), Gaps = 2/108 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAG 186 +GYV ++ + NEV + ++ ++ ++ K++ + L + + L L Sbjct: 4 HGYVDISTINKKITNEVSMVIKLLAEKIAVEYEKILKEKEINEIKIKLNDDQIKILTLEA 63 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY +IAE LG+ V TV KL+ N +A+ +A++ G I Sbjct: 64 KGYRELDIAEALGIEVVTVKYNKRKIVEKLEVKNIKEAVIRAVKLGLI 111 >gi|262393869|ref|YP_003285723.1| BarA-associated response regulator UvrY [Vibrio sp. Ex25] gi|262337463|gb|ACY51258.1| BarA-associated response regulator UvrY [Vibrio sp. Ex25] Length = 188 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ERE + + G +I+E+L LS TVN+Y KLD ++ AIR Sbjct: 121 KDLSERELQIMLMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRH 180 Query: 232 GYI 234 G + Sbjct: 181 GML 183 >gi|320012130|gb|ADW06980.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 241 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 31/51 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L++RE + L L G+G T+ +I+++L LS TV ++ KL R+QA Sbjct: 176 LSDREKAVLDLIGEGLTNRQISKRLYLSEKTVKNHISRLLSKLGVERRVQA 226 >gi|254390102|ref|ZP_05005323.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294813469|ref|ZP_06772112.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441818|ref|ZP_08216552.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197703810|gb|EDY49622.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326068|gb|EFG07711.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 219 Score = 35.4 bits (80), Expect = 5.7, Method: Compositional matrix adjust. Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 11/107 (10%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR--------NLTER 177 +G+++ + LA V + A G V + F K + A R LTER Sbjct: 100 SGFLLKDASARQLAEGVRVVASGEALLAPTVTRRLINEFSKLAQAPRIASVAQLGELTER 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ET L L G ++ EIA L ++ T+ ++ VKL +R QA Sbjct: 160 ETEVLALIAQGLSNAEIASHLVVAESTIKTHVSRILVKLGLRDRTQA 206 >gi|329901534|ref|ZP_08272842.1| hypothetical protein IMCC9480_3149 [Oxalobacteraceae bacterium IMCC9480] gi|327549077|gb|EGF33678.1| hypothetical protein IMCC9480_3149 [Oxalobacteraceae bacterium IMCC9480] Length = 37 Score = 35.4 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 17/35 (48%), Positives = 25/35 (71%) Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +SV TVN ++ +A KL+AVN+IQA+ KA G + Sbjct: 3 ISVSTVNFHINNAIEKLNAVNKIQAVVKAAMLGLL 37 >gi|311103299|ref|YP_003976152.1| sensory box protein 1 [Achromobacter xylosoxidans A8] gi|310757988|gb|ADP13437.1| sensory box protein 1 [Achromobacter xylosoxidans A8] Length = 499 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G+T EIA L LS +TV ++ + KLD R AI A + G Sbjct: 426 DLTPREREILGLMCQGHTDAEIAASLHLSRNTVRNHVAALYSKLDVHRRSAAIIWARQRG 485 Query: 233 YI 234 + Sbjct: 486 IV 487 >gi|307248252|ref|ZP_07530279.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306855269|gb|EFM87445.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 270 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L L GY++E+I+++L +++ T+ ++ + K+ NR +AI Sbjct: 206 LTAREWQVLGLIYSGYSNEQISQELVVAITTIKTHIRNLYQKIGVANRSEAI 257 >gi|288802576|ref|ZP_06408015.1| transcriptional regulator [Prevotella melaninogenica D18] gi|288335104|gb|EFC73540.1| transcriptional regulator [Prevotella melaninogenica D18] Length = 214 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+ ET L+ G T+ EIA+K S HTVN + + KL N +AI A+R G Sbjct: 147 LTKTETEILKEIALGATTREIADKRFSSFHTVNTHRKNIFRKLGVNNVHEAIRYAMRSGL 206 Query: 234 I 234 + Sbjct: 207 V 207 >gi|261496569|ref|ZP_05992949.1| maltose operon transcriptional regulator [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307772|gb|EEY09095.1| maltose operon transcriptional regulator [Mannheimia haemolytica serotype A2 str. OVINE] Length = 908 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 33/53 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE L L GY++E+I+++L ++ T+ ++ + K+ NR +AI+ Sbjct: 844 LTQREWQVLGLIYSGYSNEQISDELQVAATTIKTHIRNLYQKIGVTNRNEAIS 896 >gi|256850848|ref|ZP_05556237.1| two-component system response regulator [Lactobacillus jensenii 27-2-CHN] gi|260661059|ref|ZP_05861973.1| two-component system response regulator [Lactobacillus jensenii 115-3-CHN] gi|282934481|ref|ZP_06339736.1| two-component response regulator [Lactobacillus jensenii 208-1] gi|297205722|ref|ZP_06923117.1| LuxR family DNA-binding response regulator [Lactobacillus jensenii JV-V16] gi|256615910|gb|EEU21098.1| two-component system response regulator [Lactobacillus jensenii 27-2-CHN] gi|260547996|gb|EEX23972.1| two-component system response regulator [Lactobacillus jensenii 115-3-CHN] gi|281301428|gb|EFA93717.1| two-component response regulator [Lactobacillus jensenii 208-1] gi|297148848|gb|EFH29146.1| LuxR family DNA-binding response regulator [Lactobacillus jensenii JV-V16] Length = 201 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L++ T++E+A+KL LS TV Y+ S K +R++A+ A G+ Sbjct: 141 LTNREMDILKMLEQVATTKELAQKLFLSEGTVRNYISSILSKTGTSSRLEALNLARNKGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|189461600|ref|ZP_03010385.1| hypothetical protein BACCOP_02259 [Bacteroides coprocola DSM 17136] gi|189431710|gb|EDV00695.1| hypothetical protein BACCOP_02259 [Bacteroides coprocola DSM 17136] Length = 202 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 33/60 (55%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 I+ + ++ S L++RE + G T++EIAEKL +SVHTV + + T KL Sbjct: 116 ISVLMNFAEEDDSGQDTLSQREKEIIGCVVRGMTNKEIAEKLYISVHTVITHRRNITRKL 175 >gi|116669782|ref|YP_830715.1| LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116609891|gb|ABK02615.1| transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 910 Score = 35.4 bits (80), Expect = 5.8, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 28/48 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LTERE ++A G +++E+A +L LS+ TV +L K+ +R Sbjct: 854 LTERERQVARMASQGLSNKEVANRLQLSIRTVEGHLYQIFTKMGISSR 901 >gi|302522704|ref|ZP_07275046.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302431599|gb|EFL03415.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 226 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +L ERE G G ++ EIA +L LSV TV A++ KL NR+Q Sbjct: 157 SLAEREREVALAVGRGASNAEIAAELYLSVPTVKAHVSRVLAKLHLNNRVQ 207 >gi|289642992|ref|ZP_06475125.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289507214|gb|EFD28180.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 216 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 19/40 (47%), Positives = 24/40 (60%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 S L+ERE L+L G+T+ E+AE L LSV TV Y Sbjct: 150 STVAGLSEREAEILRLLALGHTNPEMAEVLDLSVRTVETY 189 >gi|196041819|ref|ZP_03109108.1| transcriptional regulatory protein DegU [Bacillus cereus NVH0597-99] gi|229028432|ref|ZP_04184554.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|196027313|gb|EDX65931.1| transcriptional regulatory protein DegU [Bacillus cereus NVH0597-99] gi|228732881|gb|EEL83741.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 213 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 142 KVESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAV 201 Query: 226 AKAIR 230 A+R Sbjct: 202 IYAVR 206 >gi|146309694|ref|YP_001174768.1| DNA-binding transcriptional activator UhpA [Enterobacter sp. 638] gi|145316570|gb|ABP58717.1| two component transcriptional regulator, LuxR family [Enterobacter sp. 638] Length = 197 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A G CY ++L R LT+RE + G +EIA +LGLS TV+ + Sbjct: 116 AAGGCYLTPEIAIKLAAGRQDP---LTKRERQVAEKLAQGMAVKEIAVELGLSPKTVHVH 172 Query: 209 LGSATVKLDAVNRIQ 223 + KLD N ++ Sbjct: 173 RANLMEKLDVSNDVE 187 >gi|90021218|ref|YP_527045.1| XRE family transcriptional regulator [Saccharophagus degradans 2-40] gi|89950818|gb|ABD80833.1| transcriptional regulator, XRE family [Saccharophagus degradans 2-40] Length = 227 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 19/55 (34%), Positives = 31/55 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTER+ L G +++EIA +L +S TV ++ + + + NR QA+A A Sbjct: 165 LTERQLHVLHEMLKGLSNKEIARELNMSPSTVKVHVAAILREFNVKNRTQAVAHA 219 >gi|91792794|ref|YP_562445.1| response regulator [Shewanella denitrificans OS217] gi|91714796|gb|ABE54722.1| two component transcriptional regulator, LuxR family [Shewanella denitrificans OS217] Length = 214 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NL+ERE + + G +I+EKL LS TVN+Y KL ++ AIR+ Sbjct: 148 NLSERELQIMMMITSGEKVNDISEKLNLSPKTVNSYRYRLFAKLGIGGDVELTRLAIRY 206 >gi|39995364|ref|NP_951315.1| LuxR family DNA-binding response regulator [Geobacter sulfurreducens PCA] gi|39982126|gb|AAR33588.1| DNA-binding response regulator, LuxR family [Geobacter sulfurreducens PCA] Length = 215 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 26/48 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +L++RE LQL +G S EIAE L LS ++ Y +KL N Sbjct: 151 SLSQREREVLQLVVEGKKSSEIAEILSLSPKSIETYRSRLMIKLGITN 198 >gi|158318162|ref|YP_001510670.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113567|gb|ABW15764.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 238 Score = 35.4 bits (80), Expect = 5.8, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ERE L+ G ++ EIA +L +S TV A++GS KL+ +R AI A Sbjct: 159 RLSERELQVLRAMARGASNREIAIELRVSERTVKAHVGSIFGKLEVRDRAGAIVLA 214 >gi|270263820|ref|ZP_06192088.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270042013|gb|EFA15109.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 215 Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 34/58 (58%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A+ LT +E + + +G +++ IA KLG+S+ TV ++ + K + NR + +A + Sbjct: 153 AQLLTAKEQEIVNMVREGASNKRIALKLGISLSTVKTHMRNIFAKTEVANRTELVASS 210 >gi|262370175|ref|ZP_06063502.1| response regulator [Acinetobacter johnsonii SH046] gi|262315214|gb|EEY96254.1| response regulator [Acinetobacter johnsonii SH046] Length = 211 Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L ++S L+ERE + + +++EI++KL +SV TVN Y KL+ + + Sbjct: 138 LSDTQTSPFDALSEREMQVAMMVVNCISAQEISDKLFVSVKTVNTYRYRIFEKLNIDSDV 197 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 198 KLTHLAIRYGLI 209 >gi|251790597|ref|YP_003005318.1| transcriptional regulator RcsB [Dickeya zeae Ech1591] gi|247539218|gb|ACT07839.1| two component transcriptional regulator, LuxR family [Dickeya zeae Ech1591] Length = 216 Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA KL S+ T+++ SA KL Sbjct: 134 VSKVLEKISASGYGDKRLSPKESEVLRLFAEGFLVTEIARKLNRSIKTISSQKKSAMTKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|239929966|ref|ZP_04686919.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 311 Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ RE S L +G+ IAE+LG+SV T A++ + L A +R Q Sbjct: 232 GISHREQSIAALLAEGHQDAVIAERLGISVRTCRAHIARLSETLGAASRTQ 282 >gi|228918143|ref|ZP_04081650.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841505|gb|EEM86641.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 213 Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 142 KVESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAV 201 Query: 226 AKAIR 230 A+R Sbjct: 202 IYAVR 206 >gi|296138645|ref|YP_003645888.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026779|gb|ADG77549.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 223 Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 26/49 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +LT RE L+L GYT EIAE L +SV TV + + K NR Sbjct: 161 SLTPRELEVLRLLARGYTYREIAEDLFISVKTVETHASNVLRKTQQSNR 209 >gi|153820697|ref|ZP_01973364.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae B33] gi|126521740|gb|EAZ78963.1| nitrate/nitrite response regulator protein NarP [Vibrio cholerae B33] Length = 195 Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTERE + GY + +IA++L +S TV ++ S KLD +R A Sbjct: 134 LTEREMQIMSEVAKGYRNRQIADRLFISESTVKVHMKSLLKKLDVPSRTAA 184 >gi|187478442|ref|YP_786466.1| two-component response regulator [Bordetella avium 197N] gi|115423028|emb|CAJ49559.1| putative two-component response regulator [Bordetella avium 197N] Length = 225 Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust. Identities = 22/55 (40%), Positives = 30/55 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE L+L G + EIAE+L LS +TV ++ KL +R QAI A Sbjct: 164 LSPREAQILRLVASGLGNREIAEQLHLSRYTVERHVKHVYRKLLVSSRTQAIHAA 218 >gi|56963890|ref|YP_175621.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56910133|dbj|BAD64660.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 204 Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust. Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 2/104 (1%) Query: 122 VRLGFHK--NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 +RL GY++ ++ +A ++ + G+ +L K + A LT+RE+ Sbjct: 89 IRLALQAGAEGYLLKSTAVANMAKQIRALSAGSSVLDADVLKQLVKPHADALAGLTKRES 148 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + G +++EIA L LSV TV L KL+ +R Q Sbjct: 149 EIAECIAQGLSNKEIAAHLFLSVGTVRNTLSVILDKLELRDRTQ 192 >gi|307129984|ref|YP_003882000.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Dickeya dadantii 3937] gi|306527513|gb|ADM97443.1| DNA-binding response regulator in two-component regulatory system with RcsC and YojN [Dickeya dadantii 3937] Length = 216 Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA KL S+ T+++ SA KL Sbjct: 134 VSKVLEKISASGYGDKRLSPKESEVLRLFAEGFLVTEIARKLNRSIKTISSQKKSAMTKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|302552971|ref|ZP_07305313.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302470589|gb|EFL33682.1| regulatory protein [Streptomyces viridochromogenes DSM 40736] Length = 381 Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ RE S L +G+ IAE+LG+SV T A++ + L A +R Q Sbjct: 300 GISHREQSIAALLAEGHQDAVIAERLGISVRTCRAHIARLSETLGAASRTQ 350 >gi|241258866|ref|YP_002978750.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863336|gb|ACS60999.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 352 Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 32/65 (49%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R+ + LT E + L L +G + IAE+LG S TV L KL +R QA Sbjct: 286 RPRAVSEAGLTPAEAALLDLVAEGLDNRAIAERLGKSAKTVRNQLSVIFSKLGVHSRSQA 345 Query: 225 IAKAI 229 I A+ Sbjct: 346 IVVAL 350 >gi|152981542|ref|YP_001354963.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] gi|151281619|gb|ABR90029.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 320 Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE++ L L G + E+A +L LSV T+ ++ + KL +R +A+ +A R G Sbjct: 251 LTKRESTILDLIARGDSYGEVARQLSLSVGTIQTHIKNIYDKLSVHSRGEAVYEANRRGL 310 Query: 234 I 234 + Sbjct: 311 L 311 >gi|159899859|ref|YP_001546106.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892898|gb|ABX05978.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 461 Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+ G ++ EIA L +S +TV ++ + KL ++R +A +A+R G Sbjct: 7 LSEREIEVLRQLALGASNNEIANTLVISPNTVKVHIRNIYAKLGVLSRAEATLEAVRRGL 66 Query: 234 I 234 I Sbjct: 67 I 67 >gi|54024864|ref|YP_119106.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54016372|dbj|BAD57742.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 215 Score = 35.4 bits (80), Expect = 5.9, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTE+E + L L G+G T+ +IA ++ L+ TV Y+ KL R QA A + Sbjct: 151 LTEQERTLLALLGEGLTNRQIAARMFLAEKTVKNYVSRLLTKLGVERRTQAAVLAAKL 208 >gi|304397528|ref|ZP_07379406.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304355146|gb|EFM19515.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 216 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|238025268|ref|YP_002909500.1| Autoinducer-binding domain-containing protein [Burkholderia glumae BGR1] gi|237879933|gb|ACR32265.1| Autoinducer-binding domain protein [Burkholderia glumae BGR1] Length = 273 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 29/48 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LTE E + L+ DG TS E+AE L +S TVN ++ + K++ N+ Sbjct: 212 LTEMEKTILRWTVDGKTSGELAEILQVSARTVNFHVQNILAKMNTCNK 259 >gi|194292820|ref|YP_002008727.1| response regulator in two-component regulatory system with narx, regulates anaerobic respiration and fermentation (luxr/uhpa familiy) [Cupriavidus taiwanensis LMG 19424] gi|193226724|emb|CAQ72675.1| response regulator in two-component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) [Cupriavidus taiwanensis LMG 19424] Length = 217 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 21/66 (31%), Positives = 34/66 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A LT RE +Q G +++EIA LG++ TV ++ + KL+ +R+Q Sbjct: 148 RQDDAPRLTAREREIVQGLARGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAV 207 Query: 227 KAIRFG 232 A+ G Sbjct: 208 YAVEHG 213 >gi|144898190|emb|CAM75054.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum gryphiswaldense MSR-1] Length = 213 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L L +G ++ IA +L + TV ++LG+ KL NR+QA+ Sbjct: 153 LTPRERDILHLLREGLPNKVIAARLDVREVTVKSHLGNMFRKLGVQNRLQAM 204 >gi|282861398|ref|ZP_06270463.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564056|gb|EFB69593.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 226 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEF--LMLANEVIIEAHGACYQVITDFL--ELFKKRSS-----AARNL 174 L +G+++ + F L+ V+ H IT L E ++R S + L Sbjct: 96 LAAGASGFLLKDATFPELLHGVRVVARGHALLAPEITQRLIGEFARQRISCPPDRSVDGL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G ++ +IA +L ++ HTV ++ K+ +R QA+ A G + Sbjct: 156 TAREVEVLVLIARGLSNADIAARLSITDHTVKTHINRLFAKMGLRDRAQAVILAYELGLV 215 Query: 235 C 235 Sbjct: 216 V 216 >gi|271499647|ref|YP_003332672.1| LuxR family two component transcriptional regulator [Dickeya dadantii Ech586] gi|270343202|gb|ACZ75967.1| two component transcriptional regulator, LuxR family [Dickeya dadantii Ech586] Length = 216 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 33/66 (50%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA KL S+ T+++ SA KL Sbjct: 134 VSKVLEKISASGYGDKRLSPKESEVLRLFAEGFLVTEIARKLNRSIKTISSQKKSAMTKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|221633727|ref|YP_002522953.1| putative two-component system response regulator [Thermomicrobium roseum DSM 5159] gi|221157126|gb|ACM06253.1| putative two-component system response regulator [Thermomicrobium roseum DSM 5159] Length = 246 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET LQL G +++EIA+ L L+ TV L KL +R QA A+ G Sbjct: 171 RLTRRETQLLQLVASGLSNKEIADVLSLAESTVKNRLSLLFDKLGVKDRTQAAIFALANG 230 Query: 233 YI 234 + Sbjct: 231 VL 232 >gi|221068072|ref|ZP_03544177.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220713095|gb|EED68463.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 193 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 20/45 (44%), Positives = 25/45 (55%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 R LTERE L+L G S+EIA L +SV TV+ + KL Sbjct: 132 RGLTEREREVLELITKGLGSKEIAAALDISVRTVDTHRARLAEKL 176 >gi|186474727|ref|YP_001863698.1| two component LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184198686|gb|ACC76648.1| two component transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 210 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 30/62 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE LQ+ G + EIA+ LS T++ Y KL N + I AIR G Sbjct: 148 LSDREFQVLQMLAAGRSINEIADACALSAKTISTYKTRLMQKLGFSNNAEVIRYAIRHGL 207 Query: 234 IC 235 I Sbjct: 208 IV 209 >gi|182415052|ref|YP_001820118.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842266|gb|ACB76518.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 274 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S +L++RE + L G+G + EIA KL LS+ TV + KL+ N Q + Sbjct: 188 SPVSSLSDRELEIVNLIGEGLPTREIAAKLFLSIKTVETHRVHIKRKLNLANATQLVQFC 247 Query: 229 IRF 231 +R+ Sbjct: 248 VRW 250 >gi|91204580|emb|CAJ70808.1| similar to two component response regulator [Candidatus Kuenenia stuttgartiensis] Length = 210 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 31/55 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +L RE +QL D ++++EIA L LS +T+ YL KLD +R I++ Sbjct: 144 HLNRREQEIVQLLLDDHSNKEIALNLNLSYNTIKGYLRLLMRKLDVNSRAGIISR 198 >gi|47568085|ref|ZP_00238790.1| DNA-binding response regulator [Bacillus cereus G9241] gi|229042495|ref|ZP_04190240.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229108243|ref|ZP_04237865.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229194950|ref|ZP_04321731.1| DNA-binding response regulator [Bacillus cereus m1293] gi|47555239|gb|EAL13585.1| DNA-binding response regulator [Bacillus cereus G9241] gi|228588518|gb|EEK46555.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228675259|gb|EEL30481.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228726848|gb|EEL78060.1| DNA-binding response regulator [Bacillus cereus AH676] Length = 213 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 142 KVESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAV 201 Query: 226 AKAIR 230 A+R Sbjct: 202 IYAVR 206 >gi|298504366|gb|ADI83089.1| helix-turn-helix transcriptional response regulator, LuxR family [Geobacter sulfurreducens KN400] Length = 214 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 19/48 (39%), Positives = 26/48 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +L++RE LQL +G S EIAE L LS ++ Y +KL N Sbjct: 150 SLSQREREVLQLVVEGKKSSEIAEILSLSPKSIETYRSRLMIKLGITN 197 >gi|317129844|ref|YP_004096126.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474792|gb|ADU31395.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 74 Score = 35.4 bits (80), Expect = 6.1, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE +L T++EIA +L +S TV ++ + KL R QA+ + +R G Sbjct: 12 LTKREREVFELLVQDKTTKEIAAELFISEKTVRNHISNTMQKLGVKGRSQAVIELVRLG 70 >gi|291303040|ref|YP_003514318.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572260|gb|ADD45225.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 215 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 11/106 (10%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY-------QVITDF-LELFKKRSSAARN---LTERE 178 G+++ S+ L V A GA Y +VI +F + + + A R LT RE Sbjct: 100 GFLLKASDPRELIIGVRAVADGAAYLSPRVAGRVIAEFDTDRLTRGTGAQRKVAELTPRE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L L G +++EI +L L+ TV A++ + +L NR++A Sbjct: 160 NEVLGLIASGLSNQEIGRRLHLTEGTVKAHVSAILQRLGVRNRVEA 205 >gi|71907962|ref|YP_285549.1| two component LuxR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71847583|gb|AAZ47079.1| two component transcriptional regulator, LuxR family [Dechloromonas aromatica RCB] Length = 211 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + LT R+T L+L G T++EIA LG+S TV + S ++ V+ + + + Sbjct: 144 SGSGTQLTARQTEILRLVASGRTTKEIARDLGISPKTVE-FHRSRLMERIGVHDVTGLTR 202 Query: 228 -AIRFGYIC 235 A++ G +C Sbjct: 203 FALQTGVVC 211 >gi|323497110|ref|ZP_08102130.1| two component LuxR family transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323317685|gb|EGA70676.1| two component LuxR family transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 209 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 4/110 (3%) Query: 129 NGYV---IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQL 184 GYV + + E +M N+V C Q LE + + L++RE+ L+ Sbjct: 99 KGYVLKDVGSEELVMAINQVAQGRSYLCPQASDRLLEQINEEPEQKDDTLSKRESDVLKA 158 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++EIA+ L +SV TV + KL A + + A++ G + Sbjct: 159 IANGACNKEIADSLHISVRTVETHRLRIKKKLGATSTAALVKLALQKGLV 208 >gi|323357168|ref|YP_004223564.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323273539|dbj|BAJ73684.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 200 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ G T EIA L LS TV ++ S KL +R QA A G+ Sbjct: 140 LTDRELDVLRAGARGETVAEIAASLHLSAGTVRNHVSSVLGKLGLASRQQATIHARERGW 199 Query: 234 I 234 I Sbjct: 200 I 200 >gi|308187581|ref|YP_003931712.1| Capsule synthesis two component response regulator rcsB [Pantoea vagans C9-1] gi|308058091|gb|ADO10263.1| Capsule synthesis two component response regulator rcsB [Pantoea vagans C9-1] Length = 216 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|308180746|ref|YP_003924874.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] gi|308046237|gb|ADN98780.1| response regulator [Lactobacillus plantarum subsp. plantarum ST-III] Length = 201 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 3/73 (4%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL SA N LTERE + L A G ++ IA L LS T YL + KL N Sbjct: 128 ELVTNMLSADNNPLTERELAVLVEAEKGLPTKTIAANLYLSAGTTRNYLSAIFSKLGVHN 187 Query: 221 RIQAI--AKAIRF 231 R++AI AKA ++ Sbjct: 188 RLEAIHVAKANQW 200 >gi|317127430|ref|YP_004093712.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315472378|gb|ADU28981.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 211 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE ++ G+G +++EIA +L LSV TV ++ KL+ +R Q AI+ Sbjct: 150 SLTPRELDIIRKIGEGRSNKEIAMQLSLSVGTVKNHISIILDKLELRDRTQIAIYAIK 207 >gi|260428797|ref|ZP_05782774.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] gi|260419420|gb|EEX12673.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] Length = 206 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 3/103 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETSC 181 L G+V T L N V A G Y I F+ ++ + A LT+RE Sbjct: 95 LALGAAGFVPKTLPAKSLVNAVRFMAMGEQYAPIA-FMTAAEEEEKHPLAERLTKRELEV 153 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+ +G +++EIA L L+ T+ ++ + KL+ NR QA Sbjct: 154 LRGLSEGKSNKEIARDLDLTEPTIKLHMKTLYRKLEVNNRTQA 196 >gi|229591752|ref|YP_002873871.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229363618|emb|CAY50939.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 89 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + LT E L+ A +G T EI++ S TV +L + KL+ NR+QA+ +A Sbjct: 25 AGKPLTPAELEILRWASEGKTVWEISQIRTTSEATVKFHLRNIYGKLEVSNRVQAMNEAA 84 Query: 230 RFG 232 R G Sbjct: 85 RQG 87 >gi|229156108|ref|ZP_04284207.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228627429|gb|EEK84157.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 213 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 142 KVESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAV 201 Query: 226 AKAIR 230 A+R Sbjct: 202 IYAVR 206 >gi|229820935|ref|YP_002882461.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566848|gb|ACQ80699.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 220 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT RE L L G ++ EIA +L ++ TV ++ + KL +R+QA+ F Sbjct: 154 RVLTSREREVLSLIARGLSNAEIAGRLFVTEGTVKGHVSAILAKLGLRDRVQAVI----F 209 Query: 232 GYIC 235 Y C Sbjct: 210 SYEC 213 >gi|254392355|ref|ZP_05007538.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326442209|ref|ZP_08216943.1| LuxR family transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197706025|gb|EDY51837.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 222 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 28/52 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+ RE L L G+G ++ + +L +S TV Y+ KL+ NR+QA Sbjct: 159 QLSARERDVLSLLGEGLSNADAGRRLHMSEATVKTYVSRILAKLECENRVQA 210 >gi|167763338|ref|ZP_02435465.1| hypothetical protein BACSTE_01712 [Bacteroides stercoris ATCC 43183] gi|167698632|gb|EDS15211.1| hypothetical protein BACSTE_01712 [Bacteroides stercoris ATCC 43183] Length = 203 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT E S L+ G T++EIA + LS HTVN++ + KL+ N +A A++ G Sbjct: 136 LTPAERSILKEIALGKTTKEIAAERNLSFHTVNSHRKNIFRKLNVNNAHEATKYAMKAGI 195 Query: 234 I 234 + Sbjct: 196 V 196 >gi|94497063|ref|ZP_01303636.1| transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] gi|94423435|gb|EAT08463.1| transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] Length = 248 Score = 35.4 bits (80), Expect = 6.1, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 31/192 (16%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLL----PI-----------IWQSIQEETVI 98 +H+ DL + ++ I Y D++ F + L PI W ++Q + Sbjct: 43 VHHVDLKPA-VRSVHIVDYPQDWVERFQARRLYASDPIHRASHRTNVGFAWSAVQSIISL 101 Query: 99 ESSGQ--LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156 ++ + L+ E GL G P + NG + F M A E++ Q+ Sbjct: 102 TAADRSILAEAYEAGLGD--GFTVPAHIPGELNG----SCSFAMAAGEMLDHRQLPFVQL 155 Query: 157 ITDF-LELFKKRS------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + F E +K S S +LTER+ C+ L G T EI++ LG+ TV ++ Sbjct: 156 VGSFAFEAARKISRIHAPQSECPSLTERQAECVALVARGKTDWEISQILGIGQETVIQHV 215 Query: 210 GSATVKLDAVNR 221 A + R Sbjct: 216 KDARDRYGVTKR 227 >gi|329941026|ref|ZP_08290306.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329300320|gb|EGG44218.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 227 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 2/62 (3%) Query: 174 LTERETSCL-QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L Q+AG G++++EIAE+L +S TV ++ A KL A +R Q + A G Sbjct: 162 LTGREREVLVQVAG-GHSNDEIAERLEVSPLTVKTHVNRAMSKLGARDRAQLVFIAYESG 220 Query: 233 YI 234 + Sbjct: 221 LV 222 >gi|327405906|ref|YP_004346744.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327321414|gb|AEA45906.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 226 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 35/71 (49%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 F+ S L+ERET + + +G T+ IA+ L LS HT+N + + KL N Sbjct: 143 FESFSCEPITLSERETEIITMISEGLTNIMIADSLCLSNHTINTHRKNIMAKLGVKNTAG 202 Query: 224 AIAKAIRFGYI 234 + A++ + Sbjct: 203 IVIYAVKTNLV 213 >gi|315103380|gb|EFT75356.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] Length = 210 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +LT RE L+ + G ++ +IAE L +S TV L KL +R Sbjct: 138 LMVRMRSPRTSLTAREFDVLEASAQGLSNAQIAEFLVVSEATVKTDLSHIYTKLGVTSRS 197 Query: 223 QAIAKAIRFGYI 234 A+AKA G+I Sbjct: 198 AAVAKARDIGFI 209 >gi|269796573|ref|YP_003316028.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098758|gb|ACZ23194.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 217 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L +G ++ EIAE L LS TV +++ K A +R QA+ A G Sbjct: 153 LTDREREVLVALAEGQSNTEIAESLHLSETTVKSHVSHIFTKTGARDRAQAVGIAYESGL 212 Query: 234 I 234 I Sbjct: 213 I 213 >gi|256392791|ref|YP_003114355.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359017|gb|ACU72514.1| transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 953 Score = 35.4 bits (80), Expect = 6.2, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE S L DG T+ E A +L +S V +L + KL +R Q +A+A+R Sbjct: 885 LTEREMSVAYLIADGRTNREAAAELYVSPKAVEYHLSNIYAKLGISSRRQ-LAEALR 940 >gi|229589824|ref|YP_002871943.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229361690|emb|CAY48571.1| putative two-component system, response regulator [Pseudomonas fluorescens SBW25] Length = 219 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 31/54 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 NLTERE L L G ++++I +LG+S TV Y+ S KL +R++ A Sbjct: 152 NLTEREGQTLALIAAGMSNKQIGRELGISDGTVKIYVRSLLQKLGLHSRLELAA 205 >gi|221069107|ref|ZP_03545212.1| transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220714130|gb|EED69498.1| transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 392 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 25/44 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LT E Q +G+T +E AE+ GLS+HT + SA VK+ Sbjct: 326 RLTLAEAQLAQALVNGWTLQEFAERQGLSIHTARSQFKSAAVKV 369 >gi|86748375|ref|YP_484871.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86571403|gb|ABD05960.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 309 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 26/48 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE+ L G T+ +IA+ LGLS TV+ +L KL NR Sbjct: 247 LTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294 >gi|72162677|ref|YP_290334.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71916409|gb|AAZ56311.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 217 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 30/54 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE L+ A G ++ EIA++L LS TV ++ KL R AIA+ Sbjct: 155 LTEREAEVLEAAARGLSNAEIAKELFLSEKTVKNHINRIFRKLGVRTRAAAIAR 208 >gi|330958653|gb|EGH58913.1| regulatory protein, LuxR [Pseudomonas syringae pv. maculicola str. ES4326] Length = 225 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 12/87 (13%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAAR----------NLTERETS-CLQLAGDGYTSEEI 194 I+E H Q+ E+ K S R L+ERET CL L G T+ E Sbjct: 123 ILEKHVNALQLAMPTAEIIKPDSFEERFHERLRETGQTLSERETQVCLGLLA-GRTALEQ 181 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNR 221 AE+L L V+TV +Y A +KL R Sbjct: 182 AERLMLKVNTVGSYQRRAAIKLGISGR 208 >gi|305673633|ref|YP_003865305.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|305411877|gb|ADM36996.1| two-component response regulator (paired with YhcY) [Bacillus subtilis subsp. spizizenii str. W23] Length = 215 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L +G +++EIA L +S TV ++ + KL+ +R QA A+++ Sbjct: 149 QLTRREKDVLNEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKY 207 >gi|301057012|gb|ADK54837.1| two component regulator [uncultured soil bacterium] Length = 223 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA +L ++ T ++ +KL +R QA A G Sbjct: 157 ELTERETEVLSLIAQGLSNAEIATRLVVAEQTTKTHVSRILIKLGLRDRTQAAVFAYETG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|229079676|ref|ZP_04212209.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228703516|gb|EEL55969.1| DNA-binding response regulator [Bacillus cereus Rock4-2] Length = 213 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 142 KVESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAV 201 Query: 226 AKAIR 230 A+R Sbjct: 202 IYAVR 206 >gi|167855153|ref|ZP_02477924.1| ABC transporter ATPase component [Haemophilus parasuis 29755] gi|167853698|gb|EDS24941.1| ABC transporter ATPase component [Haemophilus parasuis 29755] Length = 905 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 33/52 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L L GY++E+I+++L +++ T+ ++ + K+ NR +AI Sbjct: 841 LTQREWQVLGLIYSGYSNEQISQELVVAMTTIKTHIRNLYQKIGVSNRAEAI 892 >gi|126641440|ref|YP_001084424.1| putative two-component response regulator protein [Acinetobacter baumannii ATCC 17978] Length = 257 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 29/54 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 194 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 247 >gi|85708084|ref|ZP_01039150.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. NAP1] gi|85689618|gb|EAQ29621.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. NAP1] Length = 141 Score = 35.4 bits (80), Expect = 6.2, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 36/63 (57%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +++ ++ LT RE L G +++EIA LG+S +TV ++ + +KL+ R +A+ Sbjct: 72 EKAISSLGLTRRECEILDHLAKGASNKEIARSLGVSPNTVKTHIANLYMKLEVTGRGKAV 131 Query: 226 AKA 228 A Sbjct: 132 EAA 134 >gi|312891076|ref|ZP_07750599.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311296384|gb|EFQ73530.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 214 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 34/68 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ A L+ERE L L +GYT+ EIA+KL S TV + + K N I Sbjct: 146 KTIIAIELSEREKEVLDLISEGYTNNEIADKLFTSRRTVEGHRQNLIEKTGVKNTPSLIR 205 Query: 227 KAIRFGYI 234 A++ G I Sbjct: 206 FALQNGLI 213 >gi|310643754|ref|YP_003948512.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309248704|gb|ADO58271.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 596 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G + I+EKL LS TV Y + KL NR +A+ KA Sbjct: 535 LTKRELEVLNLLSQGNRYKTISEKLYLSNGTVRNYASTLYDKLGVNNREEAVQKA 589 >gi|302559506|ref|ZP_07311848.1| regulatory protein [Streptomyces griseoflavus Tu4000] gi|302477124|gb|EFL40217.1| regulatory protein [Streptomyces griseoflavus Tu4000] Length = 347 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ RE S L +G+ IAE+LG+SV T A++ + L A +R Q Sbjct: 268 GISHREQSIAALLAEGHQDAVIAERLGISVRTCRAHIARLSETLGAASRTQ 318 >gi|294813789|ref|ZP_06772432.1| two component transcriptional regulator, LuxR family [Streptomyces clavuligerus ATCC 27064] gi|294326388|gb|EFG08031.1| two component transcriptional regulator, LuxR family [Streptomyces clavuligerus ATCC 27064] Length = 224 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 28/52 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+ RE L L G+G ++ + +L +S TV Y+ KL+ NR+QA Sbjct: 161 QLSARERDVLSLLGEGLSNADAGRRLHMSEATVKTYVSRILAKLECENRVQA 212 >gi|270264144|ref|ZP_06192411.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041793|gb|EFA14890.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 247 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 4/75 (5%) Query: 155 QVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 ++ITD+ + + +R + ++RE L LA G + EIA LG+ + T+ ++G Sbjct: 155 KLITDYQSVSSARYFERINDKEIFSDRENDVLYLASMGKSYPEIALILGVKLTTIKYHIG 214 Query: 211 SATVKLDAVNRIQAI 225 +A KL N AI Sbjct: 215 NAVKKLGVTNAKHAI 229 >gi|271963471|ref|YP_003337667.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506646|gb|ACZ84924.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 205 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L + S +L+ RE + L DG ++ +IA +L +S TV ++L KL+ NR Sbjct: 131 RLVTRMRSPRASLSPREVEIVLLVADGLSNRQIARELFISEATVKSHLVHIYAKLEVDNR 190 Query: 222 IQAIAKAIRFGYI 234 A+ A R G + Sbjct: 191 TGAVKVARRRGLL 203 >gi|226359669|ref|YP_002777447.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226238154|dbj|BAH48502.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 785 Score = 35.4 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 31/59 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ +LT+RE+ +L DG T++ IA +L +S T ++ KL +R Q A Sbjct: 716 SNGTPHLTKRESQVAELVADGLTNKAIAARLVISQRTAQGHVEHILAKLGFTSRTQIAA 774 >gi|297197233|ref|ZP_06914630.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197717281|gb|EDY61315.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 30/63 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L L G + EIA+ LGLS T ++ KL A +R Q + A G Sbjct: 157 ELSERERQVLALVARGLNNAEIADALGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESG 216 Query: 233 YIC 235 + Sbjct: 217 LVI 219 >gi|254389656|ref|ZP_05004881.1| hypothetical protein SSCG_02208 [Streptomyces clavuligerus ATCC 27064] gi|326445318|ref|ZP_08220052.1| two-component regulator [Streptomyces clavuligerus ATCC 27064] gi|197703368|gb|EDY49180.1| hypothetical protein SSCG_02208 [Streptomyces clavuligerus ATCC 27064] Length = 77 Score = 35.4 bits (80), Expect = 6.3, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ R + L G+G TS EIAE+ LS TV Y G K A IQ + A G Sbjct: 13 LSGRRSEVLAAIGNGRTSAEIAERFVLSGPTVKKYAGRTLTKNVARGSIQDVILAYACGL 72 Query: 234 I 234 + Sbjct: 73 V 73 >gi|295836038|ref|ZP_06822971.1| two-component system response regulator [Streptomyces sp. SPB74] gi|197695120|gb|EDY42053.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 223 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 28/56 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L L G G ++ E+A + +S T Y+ KL A +R+Q + A Sbjct: 153 GLTNREREVLVLVGQGLSNTELAHHMHISTATAKTYVSRLLTKLGARDRVQLVITA 208 >gi|108798029|ref|YP_638226.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119867124|ref|YP_937076.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|126433690|ref|YP_001069381.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|108768448|gb|ABG07170.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119693213|gb|ABL90286.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] gi|126233490|gb|ABN96890.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 219 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 33/64 (51%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A + LT+RE+ L G ++ IA KL + TV +L S KL +R A+A A Sbjct: 153 GARQGLTQRESEILSFVVTGLSNRGIANKLVIGEETVKTHLRSIYRKLGVGDRAGAVATA 212 Query: 229 IRFG 232 +R G Sbjct: 213 LREG 216 >gi|220932804|ref|YP_002509712.1| two component transcriptional regulator, LuxR family [Halothermothrix orenii H 168] gi|219994114|gb|ACL70717.1| two component transcriptional regulator, LuxR family [Halothermothrix orenii H 168] Length = 209 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 36/74 (48%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 V ++ ++ LT RE L G ++ +IA+ L +S TV ++ + K Sbjct: 129 VAKKIMKRAARKGRKTEPLTPREKEVLACLVRGNSNRDIAKTLCISETTVKTHVSNILKK 188 Query: 216 LDAVNRIQAIAKAI 229 LD +R QA+ KAI Sbjct: 189 LDVKDRTQAVIKAI 202 >gi|83954912|ref|ZP_00963590.1| probable two component response regulator transcription regulator protein [Sulfitobacter sp. NAS-14.1] gi|83840638|gb|EAP79810.1| probable two component response regulator transcription regulator protein [Sulfitobacter sp. NAS-14.1] Length = 213 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ +E +L+ ++ + G + + I + L +S LTER Sbjct: 93 LSAGADGYLLKETEAAVLSRQLTQLSMGLPAISPSVARRIMEHFRLTGPVASLDGRLTER 152 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ET L L G + E+A L ++ TV Y+ KL +R +A A R G Sbjct: 153 ETEVLTLISKGLRNAEVASALNIAETTVAGYIKIVYRKLGISSRAEAAWHANRLG 207 >gi|330810227|ref|YP_004354689.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378335|gb|AEA69685.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 494 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G +EIA +L L+ +TV ++ + KLD +R +AI A G Sbjct: 425 LTARERDVLGLICEGLADKEIAARLKLAPNTVRNHVATLYSKLDVHSRSEAIVWARERG 483 >gi|284041678|ref|YP_003392018.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945899|gb|ADB48643.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 435 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 26/42 (61%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 S+A LT R+ +L G T+ E+AE LG+S HTVN +L Sbjct: 359 SAADYGLTVRQLEIARLVASGSTNREVAELLGISDHTVNTHL 400 >gi|228950550|ref|ZP_04112691.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809127|gb|EEM55607.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 213 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 142 KVESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAV 201 Query: 226 AKAIR 230 A+R Sbjct: 202 IYAVR 206 >gi|28378588|ref|NP_785480.1| response regulator [Lactobacillus plantarum WCFS1] gi|28271424|emb|CAD64329.1| response regulator [Lactobacillus plantarum WCFS1] Length = 201 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL SA N LTERE + L A G ++ IA L LS T YL + KL N Sbjct: 128 ELVTNMLSADNNPLTERELAVLVEAEKGLPTKTIAANLYLSAGTTRNYLSAIFSKLGVHN 187 Query: 221 RIQAI--AKA 228 R++AI AKA Sbjct: 188 RLEAIRVAKA 197 >gi|116672676|ref|YP_833609.1| two component LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116612785|gb|ABK05509.1| two component transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 250 Score = 35.4 bits (80), Expect = 6.3, Method: Compositional matrix adjust. Identities = 21/71 (29%), Positives = 34/71 (47%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R LT RE L+ +G ++ EIA + LS TV ++ KL +R+QA Sbjct: 174 QQRDPLLEALTPREMEMLEAMAEGLSNAEIAHRFFLSEATVKTHVRRILAKLHLRDRVQA 233 Query: 225 IAKAIRFGYIC 235 + A G + Sbjct: 234 VVYAYETGLVV 244 >gi|228907986|ref|ZP_04071836.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228851652|gb|EEM96456.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 213 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 142 KVESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAV 201 Query: 226 AKAIR 230 A+R Sbjct: 202 IYAVR 206 >gi|221211946|ref|ZP_03584924.1| CblR [Burkholderia multivorans CGD1] gi|221168031|gb|EEE00500.1| CblR [Burkholderia multivorans CGD1] Length = 220 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L + S+A L++RET ++L +GY EIAEKL S T++A +A KL Sbjct: 140 LERTESAAGATLSKRETEIVRLFREGYKVTEIAEKLHRSKKTISAQKLAAMRKL 193 >gi|206972973|ref|ZP_03233895.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134] gi|228924979|ref|ZP_04088109.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229182326|ref|ZP_04309600.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|229194039|ref|ZP_04320933.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|206731857|gb|EDZ49057.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134] gi|228589439|gb|EEK47364.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228601135|gb|EEK58682.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228834642|gb|EEM80151.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 213 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 142 KVESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAV 201 Query: 226 AKAIR 230 A+R Sbjct: 202 IYAVR 206 >gi|196047172|ref|ZP_03114389.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108] gi|229182965|ref|ZP_04310198.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|196022042|gb|EDX60732.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108] gi|228600589|gb|EEK58176.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 213 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LTERE L G +++EIAE L +S TV ++ KL+ +R QA+ Sbjct: 142 KVESNENELTEREKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAV 201 Query: 226 AKAIR 230 A+R Sbjct: 202 IYAVR 206 >gi|91978329|ref|YP_570988.1| response regulator receiver [Rhodopseudomonas palustris BisB5] gi|91684785|gb|ABE41087.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB5] Length = 309 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 26/48 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE+ L G T+ +IA+ LGLS TV+ +L KL NR Sbjct: 247 LTSRESEVLAWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294 >gi|319950299|ref|ZP_08024218.1| multi-sensor hybrid histidine kinase [Dietzia cinnamea P4] gi|319435991|gb|EFV91192.1| multi-sensor hybrid histidine kinase [Dietzia cinnamea P4] Length = 250 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 17/54 (31%), Positives = 30/54 (55%) Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L DGY+++EI++++ LSVHTV + +L A +R +A G + Sbjct: 193 IIALIADGYSNQEISDRVHLSVHTVKDRVSRIITRLGARSRAAVATRATESGLL 246 >gi|255958138|dbj|BAH97081.1| exopolysaccharide synthesis regulation protein RcsB [Pantoea ananatis] Length = 216 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|254556805|ref|YP_003063222.1| response regulator [Lactobacillus plantarum JDM1] gi|300768112|ref|ZP_07078017.1| DNA-binding response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|254045732|gb|ACT62525.1| response regulator [Lactobacillus plantarum JDM1] gi|300494176|gb|EFK29339.1| DNA-binding response regulator [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 201 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 30/70 (42%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL SA N LTERE + L A G ++ IA L LS T YL + KL N Sbjct: 128 ELVTNMLSADNNPLTERELAVLVEAEKGLPTKTIAANLYLSAGTTRNYLSAIFSKLGVHN 187 Query: 221 RIQAI--AKA 228 R++AI AKA Sbjct: 188 RLEAIRVAKA 197 >gi|86356681|ref|YP_468573.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280783|gb|ABC89846.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 86 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE + G T+ EI LG+S TVN ++ +A KL +A A+R G Sbjct: 25 VTPREREIIGWMAQGKTAAEIGTILGISPITVNTHISNAKAKLGVFKETALVAAALRNGI 84 Query: 234 I 234 I Sbjct: 85 I 85 >gi|2495419|sp|Q46967|ECHR_ERWCH RecName: Full=Transcriptional activator protein echR gi|1177878|gb|AAA86840.1| EchR [Erwinia chrysanthemi] Length = 250 Score = 35.4 bits (80), Expect = 6.4, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 32/68 (47%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +S ++RE L A G T +EIA LG++ TV ++G+ KL +N AI Sbjct: 173 KSQEPNIFSQRENEILYWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIR 232 Query: 227 KAIRFGYI 234 + I Sbjct: 233 LGVEMNLI 240 >gi|332296786|ref|YP_004438708.1| two component transcriptional regulator, LuxR family [Treponema brennaborense DSM 12168] gi|332179889|gb|AEE15577.1| two component transcriptional regulator, LuxR family [Treponema brennaborense DSM 12168] Length = 225 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + LT RE L GY++E+IAEKL L++ TV + + K +R + I A R Sbjct: 161 KELTNREREIATLLVTGYSNEQIAEKLHLAIQTVRNQVSAIYFKTGVKDRFEMIRLANR 219 >gi|329939332|ref|ZP_08288668.1| two-component system regulator [Streptomyces griseoaurantiacus M045] gi|329301561|gb|EGG45455.1| two-component system regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 13/109 (11%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK-KRSSAAR-----NLT 175 +G+++ + LA V + A G ++IT+F L + R AA LT Sbjct: 109 SGFLLKDASARQLAEGVRVVASGEALLAPSVTRRLITEFSRLAEAPRLPAAAPGAYGELT 168 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ERET L L G ++ EIA +L ++ T+ ++ VKL +R QA Sbjct: 169 ERETEVLILIAQGLSNAEIAGRLVVAESTIKTHVSRVLVKLGLRDRTQA 217 >gi|304437977|ref|ZP_07397921.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368931|gb|EFM22612.1| response regulator [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 212 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 163 LFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +F+ AA + LT RE GYT EIAE+L LSV TV+ + KL Sbjct: 136 MFRPAEEAADDPRSVLTAREREVFDELIHGYTITEIAERLHLSVKTVDTHKKHIYEKLHC 195 Query: 219 VNRIQAIAKAIRFGYI 234 R + A+R G + Sbjct: 196 SRRSDLVTLALRNGLL 211 >gi|262376982|ref|ZP_06070208.1| response regulator [Acinetobacter lwoffii SH145] gi|262308020|gb|EEY89157.1| response regulator [Acinetobacter lwoffii SH145] Length = 211 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + + +++EIA+KL +SV TVN Y KL+ + ++ A+R+G Sbjct: 149 LSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLNIDSDVKLTHLAMRYGL 208 Query: 234 I 234 I Sbjct: 209 I 209 >gi|291302120|ref|YP_003513398.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571340|gb|ADD44305.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE + L G G ++EEI+ L +S T ++ A KL + +R Q + A G Sbjct: 155 LTPREREVVTLVGQGKSNEEISRLLHISHTTAKTHVSRAMTKLGSRDRAQLVVAAYESGL 214 Query: 234 IC 235 + Sbjct: 215 VV 216 >gi|196231768|ref|ZP_03130625.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196224240|gb|EDY18753.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 216 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R + +LT RE ++ +G T++E+A+ LG+S+ T ++ + KL + I Sbjct: 146 ERPAPGNSLTSREREAVKFIAEGRTNKELADVLGVSLRTAESHRAAVMQKLGLKTIGELI 205 Query: 226 AKAIRFGYI 234 A+R G I Sbjct: 206 RYALRNGII 214 >gi|153004251|ref|YP_001378576.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027824|gb|ABS25592.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 212 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L+L G ++ E+A +L +S TV + + KL A + + + AIR G Sbjct: 149 SLTQREREVLRLLAQGDSNREVAGQLSISAKTVETHRANVMRKLGASSIVDLVHYAIRNG 208 Query: 233 YI 234 + Sbjct: 209 IV 210 >gi|119025235|ref|YP_909080.1| response regulator [Bifidobacterium adolescentis ATCC 15703] gi|118764819|dbj|BAF38998.1| response regulator containing a CheY-like receiver domain and a HTH DNA-binding domain [Bifidobacterium adolescentis ATCC 15703] Length = 209 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 39/76 (51%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D + + +S + L+ +E + G+T+ IA +L +S +V Y A KL A Sbjct: 134 DEVASWAGKSINSMRLSGKELQIIAGYARGFTTSTIAHQLNISEASVKTYARRAFEKLHA 193 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+A +R G+I Sbjct: 194 HSRAEAVAMCVRNGWI 209 >gi|83312988|ref|YP_423252.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82947829|dbj|BAE52693.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 290 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 SA +LT R+ L L G G +++EIA L L+ TV ++ + L+ NR +A+ A Sbjct: 219 SAIASLTPRQREVLALLGQGKSNKEIARVLELAEGTVKLHVTAILKALNVNNRTRAVVAA 278 Query: 229 IRFG 232 G Sbjct: 279 SHLG 282 >gi|329576949|gb|EGG58431.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX1467] Length = 151 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE L++ G IA K+ ++ T+ Y+ S KL+ + I ++ KAI G Sbjct: 86 ITPREKEVLRILSQGVKQSAIASKMNITDRTLRNYVYSINEKLETNSAIASVVKAIELGI 145 Query: 234 I 234 I Sbjct: 146 I 146 >gi|300725051|ref|YP_003714379.1| maltose utilization transcriptional activator [Xenorhabdus nematophila ATCC 19061] gi|297631596|emb|CBJ92305.1| transcriptional activator of maltose utilization, binds maltotriose (inducer) and ATP (LysR familiy) [Xenorhabdus nematophila ATCC 19061] Length = 904 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 13/88 (14%) Query: 143 NEVIIEAHGACYQVIT--DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 +EV +E Q+IT D EL + LT+RE L L GY++++IA +L + Sbjct: 817 DEVFVE------QLITHPDVPELIRNSP-----LTQREWQVLGLIYSGYSNDQIAAELEV 865 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +V T+ ++ + K+ +R +AI +A Sbjct: 866 AVTTIKTHIRNLYQKMGITHRKEAIQQA 893 >gi|291438301|ref|ZP_06577691.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291341196|gb|EFE68152.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 377 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ RE S L +G+ IAE+LG+SV T A++ + L A +R Q Sbjct: 298 GISHREQSIAALLAEGHQDAVIAERLGISVRTCRAHIARLSETLGAASRTQ 348 >gi|188533373|ref|YP_001907170.1| transcriptional regulator RcsB [Erwinia tasmaniensis Et1/99] gi|188028415|emb|CAO96276.1| Regulator of capsule synthesis B component [Erwinia tasmaniensis Et1/99] Length = 215 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|163803038|ref|ZP_02196924.1| response regulator [Vibrio sp. AND4] gi|159173212|gb|EDP58041.1| response regulator [Vibrio sp. AND4] Length = 214 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ERE + + G +I+++L LS TVN+Y KLD ++ AIR Sbjct: 147 KDLSERELQIMMMITKGQKVTDISDQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRH 206 Query: 232 GYI 234 G + Sbjct: 207 GML 209 >gi|126640329|ref|YP_001083313.1| response regulator [Acinetobacter baumannii ATCC 17978] gi|194474666|gb|ACF74452.1| response regulator [Acinetobacter baumannii] Length = 192 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE + + +++EIA+KL +SV TVN Y KL + ++ AIR+G Sbjct: 129 SLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYG 188 Query: 233 YI 234 I Sbjct: 189 LI 190 >gi|292488813|ref|YP_003531700.1| activator of exoploysaccharide synthesis [Erwinia amylovora CFBP1430] gi|292899965|ref|YP_003539334.1| capsular synthesis two-component response regulator [Erwinia amylovora ATCC 49946] gi|1890396|emb|CAA70978.1| rcsB [Erwinia amylovora] gi|291199813|emb|CBJ46936.1| capsular synthesis two-component response regulator [Erwinia amylovora ATCC 49946] gi|291554247|emb|CBA21538.1| activator of exoploysaccharide synthesis [Erwinia amylovora CFBP1430] gi|312172970|emb|CBX81225.1| activator of exoploysaccharide synthesis [Erwinia amylovora ATCC BAA-2158] Length = 215 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|67923468|ref|ZP_00516945.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501] gi|67854703|gb|EAM49985.1| regulatory protein, LuxR [Crocosphaera watsonii WH 8501] Length = 94 Score = 35.4 bits (80), Expect = 6.5, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 28/50 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT ET +QL G ++ E+AEKL +S T+ +++ + K NR + Sbjct: 34 LTPTETKVVQLVAKGLSNREVAEKLSVSRRTIESHVSNMLNKTSLKNRTE 83 >gi|320162117|ref|YP_004175342.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995971|dbj|BAJ64742.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 212 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G T++ IA +LG+S TV + KLD + A+R G Sbjct: 148 RLTAREKQVLALLASGLTTQAIAVRLGVSPKTVETHRSHVMSKLDLYDIASLTRFALRHG 207 Query: 233 YI 234 I Sbjct: 208 LI 209 >gi|258592172|emb|CBE68481.1| protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 367 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 26/52 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LT RE L G T+ E+AE LGLS TV +L KL R+ A Sbjct: 304 DLTRREAEVLLWVAHGKTNVEVAEILGLSSRTVQKHLEHIFKKLGVETRVAA 355 >gi|294638237|ref|ZP_06716490.1| response regulator UvrY [Edwardsiella tarda ATCC 23685] gi|291088490|gb|EFE21051.1| response regulator UvrY [Edwardsiella tarda ATCC 23685] Length = 196 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 3/83 (3%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 LA+ V A G Y + +L + R LT RE + G E+AE+LGL Sbjct: 109 LASAVRTVAQGGVYLMPEIAQQLARTRIDP---LTRREREVAMMLAQGLEVREVAERLGL 165 Query: 201 SVHTVNAYLGSATVKLDAVNRIQ 223 S TV+ + + VKL N ++ Sbjct: 166 SPKTVHVHRANLFVKLGVNNNVE 188 >gi|256394564|ref|YP_003116128.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360790|gb|ACU74287.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 201 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 35/63 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A+ +LT RE L L G ++ EIA +L +S TV ++ + K+ +R QA+ A+ Sbjct: 137 ASADLTPREAEVLTLIARGKSNTEIAGELFVSAATVKTHINNLFAKIGVRDRAQAVRYAL 196 Query: 230 RFG 232 R G Sbjct: 197 RRG 199 >gi|317048906|ref|YP_004116554.1| LuxR family two component transcriptional regulator [Pantoea sp. At-9b] gi|316950523|gb|ADU69998.1| two component transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 216 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|284029460|ref|YP_003379391.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283808753|gb|ADB30592.1| transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 361 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 33/59 (55%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +AA LT+RE QL G ++ ++A +L LS HTV ++ S K +R + +AK Sbjct: 284 TAAYGLTDRELEITQLIARGLSTGQLAARLYLSQHTVRDHVKSIFAKTGVTSRGELVAK 342 >gi|226308907|ref|YP_002768867.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226188024|dbj|BAH36128.1| probable NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 209 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE+ L L +G T+ E+ + L +S TV +LG KL R A++ A+R Sbjct: 148 LTARESELLSLLAEGMTNRELGKALFISEATVKTHLGHIYAKLGVETRSAAVSVALR 204 >gi|6606195|gb|AAF19104.1|AF136167_2 AbsR2 [Streptomyces coelicolor] Length = 605 Score = 35.4 bits (80), Expect = 6.6, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 29/49 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT R+ + LA G ++ +IAE+L LSV TV +L A +L A +R Sbjct: 542 ELTARQRQIVTLAAAGLSNRQIAERLTLSVRTVGNHLYGAYTRLGAGDR 590 >gi|321314657|ref|YP_004206944.1| two-component response regulator YhcY [Bacillus subtilis BSn5] gi|320020931|gb|ADV95917.1| two-component response regulator (YhcY) [Bacillus subtilis BSn5] Length = 215 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L +G +++EIA L +S TV ++ + KL+ +R QA A+++ Sbjct: 149 QLTRREKDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYN 208 >gi|308178154|ref|YP_003917560.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307745617|emb|CBT76589.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 222 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 17/48 (35%), Positives = 31/48 (64%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L++RE ++L GY+ +E+A++L +SV TV +++ + KL NR Sbjct: 162 LSDRELQVMRLIARGYSYKEVAKELFISVKTVESHVSNVLRKLQLSNR 209 >gi|297160212|gb|ADI09924.1| erythropoiesis-stimulating protein [Streptomyces bingchenggensis BCW-1] Length = 339 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 2/98 (2%) Query: 139 LMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 L+L ++ A A ++ I + F +R LT + + L L G+T E +A Sbjct: 231 LLLRGSGLVSALCALFEHIWEEAPPFGATRRRDEDTGLTSQARAVLSLLAQGHTDEVVAR 290 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 K+G+SV T +L A +R QA A G++ Sbjct: 291 KMGISVRTARRITAELMTQLGARSRFQAGVIAGERGWL 328 >gi|296269694|ref|YP_003652326.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092481|gb|ADG88433.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 201 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 55/118 (46%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEF----LMLANEVIIEAHGACYQVITDFL----ELFKKRSSAARN-LTE 176 F + GY+ E ++ + + E GA +V+ L EL SA N LTE Sbjct: 84 FGRPGYLRRAMEAGARGFLVKDGPVEELAGAIRRVLRGELVVDPELAAAALSAGPNPLTE 143 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L A DG T +IA +L LS TV YL S+ K NRI+A A G++ Sbjct: 144 REREVLAAAADGATVADIAARLHLSESTVRNYLSSSIGKTGTRNRIEAARVARHNGWL 201 >gi|229489109|ref|ZP_04382975.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis SK121] gi|229324613|gb|EEN90368.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis SK121] Length = 209 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 21/57 (36%), Positives = 31/57 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE+ L L +G T+ E+ + L +S TV +LG KL R A++ A+R Sbjct: 148 LTARESELLSLLAEGMTNRELGKALFISEATVKTHLGHIYAKLGVDTRSAAVSVALR 204 >gi|223934752|ref|ZP_03626672.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896707|gb|EEF63148.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 224 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 30/58 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE QL G G + +IA +L LS+ TV Y KL N ++ + AI + Sbjct: 163 LSDRELEVFQLIGSGRRTGQIAAELHLSIKTVETYRAHIKEKLMLRNGMELVRHAIHW 220 >gi|154486623|ref|ZP_02028030.1| hypothetical protein BIFADO_00440 [Bifidobacterium adolescentis L2-32] gi|154084486|gb|EDN83531.1| hypothetical protein BIFADO_00440 [Bifidobacterium adolescentis L2-32] Length = 209 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 39/76 (51%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D + + +S + L+ +E + G+T+ IA +L +S +V Y A KL A Sbjct: 134 DEVASWAGKSINSMRLSGKELQIIANYARGFTTSTIAHQLNISEASVKTYARRAFEKLHA 193 Query: 219 VNRIQAIAKAIRFGYI 234 +R +A+A +R G+I Sbjct: 194 HSRAEAVAMCVRNGWI 209 >gi|154252142|ref|YP_001412966.1| two component LuxR family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154156092|gb|ABS63309.1| two component transcriptional regulator, LuxR family [Parvibaculum lavamentivorans DS-1] Length = 215 Score = 35.4 bits (80), Expect = 6.7, Method: Compositional matrix adjust. Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%) Query: 144 EVIIEAHGACYQVITD-FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 ++++ AH + TD FL + LT R+ L G G +++EIA LG+S+ Sbjct: 125 DILLTAHAEGFAETTDSFL------GAGHEKLTPRQREVLLELGKGRSNQEIAHVLGISI 178 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIR 230 TV ++ + L NR +A A+R Sbjct: 179 ATVKLHVNAILQTLGVRNRTEAAIIALR 206 >gi|294630498|ref|ZP_06709058.1| regulatory protein [Streptomyces sp. e14] gi|292833831|gb|EFF92180.1| regulatory protein [Streptomyces sp. e14] Length = 347 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ RE S L +G+ IAE+LG+SV T A++ + L A +R Q Sbjct: 264 GISHRERSIAALLAEGHQDAVIAERLGISVRTCRAHIARLSETLGAASRTQ 314 >gi|261213107|ref|ZP_05927391.1| transcriptional regulator LuxR family [Vibrio sp. RC341] gi|260838172|gb|EEX64849.1| transcriptional regulator LuxR family [Vibrio sp. RC341] Length = 237 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 2/95 (2%) Query: 141 LANEVIIE-AHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYTSEEIAEKL 198 L + I+E H C FK + AA LT RE+ L L G + IA + Sbjct: 121 LTDTAILEVGHWVCRATGLSTSSTFKSMADRAALKLTARESEVLFLLLYGKKPQHIARVM 180 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G+S+ TV Y K A+++ Q I A+ G+ Sbjct: 181 GISIKTVEGYEAKLRNKFGALSKDQLIDLALDRGF 215 >gi|260583489|ref|ZP_05851237.1| DNA-binding response regulator VraR [Granulicatella elegans ATCC 700633] gi|260158115|gb|EEW93183.1| DNA-binding response regulator VraR [Granulicatella elegans ATCC 700633] Length = 204 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +L ++++S + L ERE L L +GY ++EIAEK+ LS T+ Y Sbjct: 134 KLVQRKTS--KLLNERENELLYLIAEGYNNKEIAEKMYLSEGTIRNY 178 >gi|126695527|ref|YP_001090413.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] gi|126542570|gb|ABO16812.1| two-component response regulator [Prochlorococcus marinus str. MIT 9301] Length = 242 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 30/57 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + T RE S LQL +G ++EIA +L S+ V Y+ +K +R + + A+ Sbjct: 180 SFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYAL 236 >gi|78063727|ref|YP_373635.1| two component LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77971612|gb|ABB12991.1| two component transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 224 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 29/52 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + AR LT RE ++L G GYT EIA +L S T+++ SA KL V Sbjct: 146 TDTARPLTTREIEVVRLFGAGYTVGEIAAQLHRSKQTISSQKTSAMKKLGIV 197 >gi|84517329|ref|ZP_01004683.1| transcriptional regulator, LuxR family [Loktanella vestfoldensis SKA53] gi|84508809|gb|EAQ05272.1| transcriptional regulator, LuxR family [Loktanella vestfoldensis SKA53] Length = 202 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NLT+ E L + DG +EIA +L +S V L +A +KL A QA A A ++G Sbjct: 141 NLTKAEIEALGMIKDGRRLKEIAFQLKVSEGAVKQRLKNAKLKLGAKTGTQAAALASQYG 200 Query: 233 YI 234 I Sbjct: 201 LI 202 >gi|329298020|ref|ZP_08255356.1| transcriptional regulator RcsB [Plautia stali symbiont] Length = 216 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VAKLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVNRI 222 N I Sbjct: 194 GVDNDI 199 >gi|325124210|gb|ADY83733.1| response regulator GacA (global antibiotic and cyanide control protein, LuxR/UhpA family) [Acinetobacter calcoaceticus PHEA-2] Length = 205 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE + + +++EIA+KL +SV TVN Y KL + ++ AIR+G Sbjct: 142 SLSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLAIDSDVKLTHLAIRYG 201 Query: 233 YI 234 I Sbjct: 202 LI 203 >gi|300787274|ref|YP_003767565.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796788|gb|ADJ47163.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 213 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L+L G T+ +I +L +S TV +L KL+ +R A+ A++ G Sbjct: 151 LTPRETQVLRLVARGLTNADIGRELHISETTVKTHLVRMFAKLEVGDRTAAVTVAMQRG 209 >gi|237507372|ref|ZP_04520087.1| GerE family regulatory protein [Burkholderia pseudomallei MSHR346] gi|234999577|gb|EEP49001.1| GerE family regulatory protein [Burkholderia pseudomallei MSHR346] Length = 921 Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+L G +++EIA + + TV +L + KLDA +R A+ +A+ G Sbjct: 857 LTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 916 Query: 234 I 234 + Sbjct: 917 L 917 >gi|297563838|ref|YP_003682811.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848287|gb|ADH70305.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 206 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A ++L++RE L L DG ++ A +L +S ++ +L KL +R A+A Sbjct: 138 RRPAGQSLSDRELQVLGLVADGASNRAAAARLFISEASIKTHLQHVYNKLGVRDRAAAVA 197 Query: 227 KAIRFGYI 234 +A R G + Sbjct: 198 EAYRRGLL 205 >gi|242311949|ref|ZP_04810966.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|242135188|gb|EES21591.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] Length = 921 Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+L G +++EIA + + TV +L + KLDA +R A+ +A+ G Sbjct: 857 LTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 916 Query: 234 I 234 + Sbjct: 917 L 917 >gi|217424211|ref|ZP_03455710.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|217392676|gb|EEC32699.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] Length = 921 Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+L G +++EIA + + TV +L + KLDA +R A+ +A+ G Sbjct: 857 LTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 916 Query: 234 I 234 + Sbjct: 917 L 917 >gi|254192581|ref|ZP_04899020.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|169649339|gb|EDS82032.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] Length = 921 Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+L G +++EIA + + TV +L + KLDA +R A+ +A+ G Sbjct: 857 LTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 916 Query: 234 I 234 + Sbjct: 917 L 917 >gi|148977193|ref|ZP_01813820.1| transcriptional regulator, LuxR family protein [Vibrionales bacterium SWAT-3] gi|145963475|gb|EDK28738.1| transcriptional regulator, LuxR family protein [Vibrionales bacterium SWAT-3] Length = 209 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT ++ L + DG +++IA +L +S T+ A++ + KLD NR QA+ Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAV 201 >gi|53723309|ref|YP_112294.1| GerE family regulatory protein [Burkholderia pseudomallei K96243] gi|226199224|ref|ZP_03794784.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|52213723|emb|CAH39777.1| GerE family regulatory protein [Burkholderia pseudomallei K96243] gi|225928631|gb|EEH24658.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] Length = 921 Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+L G +++EIA + + TV +L + KLDA +R A+ +A+ G Sbjct: 857 LTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 916 Query: 234 I 234 + Sbjct: 917 L 917 >gi|29831080|ref|NP_825714.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608194|dbj|BAC72249.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 224 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 13/109 (11%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKK-RSSAARN-----LT 175 +G+++ + LA+ V + A G ++IT+F L + R SA+ + LT Sbjct: 103 SGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSRLAETPRLSASVHAAYGELT 162 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ERET L L G ++ EIA +L ++ T+ ++ VKL +R QA Sbjct: 163 ERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQA 211 >gi|251768274|ref|ZP_02270085.2| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|243060341|gb|EES42527.1| transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] Length = 894 Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+L G +++EIA + + TV +L + KLDA +R A+ +A+ G Sbjct: 830 LTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 889 Query: 234 I 234 + Sbjct: 890 L 890 >gi|76817917|ref|YP_336593.1| GerE family regulatory protein [Burkholderia pseudomallei 1710b] gi|254262602|ref|ZP_04953467.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|76582390|gb|ABA51864.1| GerE family regulatory protein [Burkholderia pseudomallei 1710b] gi|254213604|gb|EET02989.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 921 Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+L G +++EIA + + TV +L + KLDA +R A+ +A+ G Sbjct: 857 LTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 916 Query: 234 I 234 + Sbjct: 917 L 917 >gi|53715925|ref|YP_106553.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|121597681|ref|YP_990662.1| LuxR family transcriptional regulator [Burkholderia mallei SAVP1] gi|124382610|ref|YP_001025150.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC 10229] gi|126447294|ref|YP_001079501.1| LuxR family transcriptional regulator [Burkholderia mallei NCTC 10247] gi|238562340|ref|ZP_00440625.2| transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|254176191|ref|ZP_04882849.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254203568|ref|ZP_04909929.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|254205440|ref|ZP_04911793.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|52421895|gb|AAU45465.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|121225479|gb|ABM49010.1| transcriptional regulator, LuxR family [Burkholderia mallei SAVP1] gi|126240148|gb|ABO03260.1| transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10247] gi|147745807|gb|EDK52886.1| transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|147755026|gb|EDK62090.1| transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|160697233|gb|EDP87203.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|238522869|gb|EEP86311.1| transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|261826888|gb|ABM99117.2| transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] Length = 917 Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+L G +++EIA + + TV +L + KLDA +R A+ +A+ G Sbjct: 853 LTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 912 Query: 234 I 234 + Sbjct: 913 L 913 >gi|54022870|ref|YP_117112.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54014378|dbj|BAD55748.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 211 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 26/49 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +LT RE L+L GYT EIAE L +SV TV + + K NR Sbjct: 150 SLTPRELEVLRLLARGYTYREIAETLFISVKTVETHASNVLRKTQQSNR 198 >gi|126456123|ref|YP_001077126.1| LuxR family transcriptional regulator [Burkholderia pseudomallei 1106a] gi|126229891|gb|ABN93304.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] Length = 898 Score = 35.4 bits (80), Expect = 6.8, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+L G +++EIA + + TV +L + KLDA +R A+ +A+ G Sbjct: 834 LTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 893 Query: 234 I 234 + Sbjct: 894 L 894 >gi|238799341|ref|ZP_04642781.1| HTH-type transcriptional regulator malT [Yersinia mollaretii ATCC 43969] gi|238716809|gb|EEQ08685.1| HTH-type transcriptional regulator malT [Yersinia mollaretii ATCC 43969] Length = 903 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF-- 231 LT+RE L L GY++++IA +L ++ T+ ++ + KL +R +A+ +A R Sbjct: 839 LTQREWQVLGLIYSGYSNDQIAGELDVAATTIKTHIRNLYQKLGVGHRQEAVQQAQRLLQ 898 Query: 232 --GYI 234 GYI Sbjct: 899 MMGYI 903 >gi|109898298|ref|YP_661553.1| two component LuxR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109700579|gb|ABG40499.1| two component transcriptional regulator, LuxR family [Pseudoalteromonas atlantica T6c] Length = 213 Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT + LQL DG +++IA +LG+S T+ ++ + KL NR QA Sbjct: 151 QLTPHQLKVLQLMADGLLNKQIAYELGVSESTIKQHVSAVLHKLGFNNRTQA 202 >gi|310827738|ref|YP_003960095.1| hypothetical protein ELI_2149 [Eubacterium limosum KIST612] gi|308739472|gb|ADO37132.1| hypothetical protein ELI_2149 [Eubacterium limosum KIST612] Length = 851 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 2/74 (2%) Query: 163 LFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L + +++ +N L+ ++ L L GY + +IA GL++ T+ ++ A KL+ N Sbjct: 777 LLSRPTTSPKNIKLSRQQKYMLDLLSQGYRNADIARITGLALPTIKSHTSLAYKKLEVNN 836 Query: 221 RIQAIAKAIRFGYI 234 + A+ KA G I Sbjct: 837 ALDAVLKARELGII 850 >gi|300782719|ref|YP_003763010.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792233|gb|ADJ42608.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 226 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 27/50 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L+L GY +EIA +L +SV TV ++ S K NR + Sbjct: 166 LTPRERDVLRLLARGYAYKEIASELFISVKTVETHVSSVLRKTQLSNRYE 215 >gi|239983739|ref|ZP_04706263.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291455547|ref|ZP_06594937.1| two component transcriptional regulator [Streptomyces albus J1074] gi|291358496|gb|EFE85398.1| two component transcriptional regulator [Streptomyces albus J1074] Length = 225 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 26/49 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LT RET +L G+T+ EI L +S T ++ + KL A NR+ Sbjct: 159 LTARETEIARLVAQGHTNAEIGMTLSISPGTAKTHIANIQTKLKARNRV 207 >gi|271968535|ref|YP_003342731.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270511710|gb|ACZ89988.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 220 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%) Query: 168 SSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +SA R LT RE L G ++ EIA L L+ TV +LG +KL+ +R+QA+ Sbjct: 149 ASAERLQRLTPREREVLIEVARGLSNTEIAAGLHLAEATVKTHLGRILLKLELRDRVQAV 208 >gi|254421396|ref|ZP_05035114.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188885|gb|EDX83849.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 242 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RET L G+G +++EIA++L LS TV ++ S +L +R QA Sbjct: 177 LTPRETEVLVCIGNGASNKEIAQQLFLSEGTVKNHVTSVLSRLGLRDRTQA 227 >gi|170694163|ref|ZP_02885318.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170140903|gb|EDT09076.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 262 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT R+ CL G TS EI E LG S +TV ++ A L+ +R A A G Sbjct: 200 LTARQLECLTWVARGKTSAEIGEILGRSRYTVEFHIKEAMDALNIRSRTAAAVHATVQGI 259 Query: 234 I 234 I Sbjct: 260 I 260 >gi|326385636|ref|ZP_08207270.1| two component LuxR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] gi|326209970|gb|EGD60753.1| two component LuxR family transcriptional regulator [Novosphingobium nitrogenifigens DSM 19370] Length = 213 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN-RIQAIA 226 S + LT R+ L L G+ ++ IA L +S TV +L SA ++L VN R+Q + Sbjct: 146 SPSVPRLTRRQYEVLTLTLQGHANKVIAHNLSMSEGTVKTHL-SAVMRLYGVNNRVQLLR 204 Query: 227 KAIRFGY 233 + R GY Sbjct: 205 EVERVGY 211 >gi|282860668|ref|ZP_06269734.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564404|gb|EFB69940.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 220 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 5/63 (7%) Query: 168 SSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 SSA R+ L+ RE L G G ++ EIA L L+ TV ++LG KL+ +RI Sbjct: 146 SSADRDEWLSRLSAREREVLIKVGCGLSNTEIAATLYLAEATVKSHLGRILQKLELRDRI 205 Query: 223 QAI 225 QA+ Sbjct: 206 QAV 208 >gi|312199476|ref|YP_004019537.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311230812|gb|ADP83667.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 215 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%) Query: 146 IIEAHGACYQ--VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 I+ A G V+ + L ++ AR L+ E + L L G + IAE+L +SV+ Sbjct: 122 ILAAGGTVVDSDVVAELLAARRRDDPLAR-LSASERAVLGLMAQGLSDRGIAERLFVSVN 180 Query: 204 TVNAYLGSATVKLD 217 TV ++GS KLD Sbjct: 181 TVGTHVGSVFRKLD 194 >gi|302524105|ref|ZP_07276447.1| two-component system response regulator [Streptomyces sp. AA4] gi|302433000|gb|EFL04816.1| two-component system response regulator [Streptomyces sp. AA4] Length = 222 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 27/50 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L+L GY +EIA +L +SV TV ++ S K NR + Sbjct: 162 LTPRERDVLRLLARGYAYKEIASELFISVKTVETHVSSVLRKTQLSNRYE 211 >gi|149182159|ref|ZP_01860641.1| YhcZ [Bacillus sp. SG-1] gi|148850110|gb|EDL64278.1| YhcZ [Bacillus sp. SG-1] Length = 213 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ G +++EIA L ++ TV ++ + KL+ +R QA A++ G Sbjct: 151 LTNRERDVLKELAKGKSNKEIAASLYITEKTVKTHISNIFAKLEVSDRTQAALYAVKHG 209 >gi|148654853|ref|YP_001275058.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148566963|gb|ABQ89108.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 227 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE LQL +G + EIA +L ++ +T ++ + KL NR++A Sbjct: 154 LTSRELEILQLIAEGLGNREIAARLDITYNTAMKHVSNILAKLKVSNRMEA 204 >gi|54308044|ref|YP_129064.1| putative nitrate/nitrite response regulator protein [Photobacterium profundum SS9] gi|46912470|emb|CAG19262.1| putative nitrate/nitrite response regulator protein [Photobacterium profundum SS9] Length = 208 Score = 35.4 bits (80), Expect = 6.9, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RET LQ GY +++IA+ L +S TV ++ S KL +R A Sbjct: 148 LTDRETQILQEVAKGYRNKQIADALFISEATVKVHMKSLLKKLQVKSRTAA 198 >gi|297625882|ref|YP_003687645.1| LuxR family transcriptional regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921647|emb|CBL56204.1| Regulatory protein, LuxR:Response regulator receiver [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 232 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 17/49 (34%), Positives = 29/49 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L++RE ++L GYT +E+A +L +S+ TV ++ + KL NR Sbjct: 171 RLSQREREVMKLIARGYTYKEVARELFISIKTVETHVSNVLRKLQLSNR 219 >gi|291483400|dbj|BAI84475.1| hypothetical protein BSNT_01607 [Bacillus subtilis subsp. natto BEST195] Length = 215 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L +G +++EIA L +S TV ++ + KL+ +R QA A+++ Sbjct: 149 QLTRREKDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYN 208 >gi|284043606|ref|YP_003393946.1| GAF modulated LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947827|gb|ADB50571.1| GAF modulated transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 277 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE +L DG T+ EI +LG++++TV ++ KL A +R++A+ Sbjct: 217 LSARELQVFELLVDGLTNAEIGHELGIALNTVKQHVRHIYEKLGARSRVEAV 268 >gi|257063294|ref|YP_003142966.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Slackia heliotrinireducens DSM 20476] gi|256790947|gb|ACV21617.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Slackia heliotrinireducens DSM 20476] Length = 512 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 45/90 (50%), Gaps = 9/90 (10%) Query: 143 NEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 + V IE H + + DF+ + FK L+ RE L+ GY S ++A+++G+S Sbjct: 428 SSVAIETHRGKFNIAIDFIADEFK--------LSRREKDVLRYLAMGYGSSKVADEMGIS 479 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +TV + + KLD ++ +A R+ Sbjct: 480 WNTVRTHTRNLYGKLDVHSKDDLMALVDRY 509 >gi|226362289|ref|YP_002780067.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226240774|dbj|BAH51122.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 75 Score = 35.4 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 30/59 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L G ++ IA +LG+S TV ++ S KLD NR +A A IR G Sbjct: 4 LNPRELEVLAHLTVGKRNKAIASELGISESTVKFHVASVLQKLDVTNRGEAGAIGIRAG 62 >gi|169796310|ref|YP_001714103.1| putative two-component response regulator protein [Acinetobacter baumannii AYE] gi|213156954|ref|YP_002318999.1| two component transcriptional regulator, LuxR family [Acinetobacter baumannii AB0057] gi|215483769|ref|YP_002325994.1| response regulator [Acinetobacter baumannii AB307-0294] gi|301344835|ref|ZP_07225576.1| response regulator [Acinetobacter baumannii AB056] gi|301513697|ref|ZP_07238934.1| response regulator [Acinetobacter baumannii AB058] gi|301596924|ref|ZP_07241932.1| response regulator [Acinetobacter baumannii AB059] gi|332851608|ref|ZP_08433557.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332866495|ref|ZP_08437037.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] gi|169149237|emb|CAM87119.1| putative two-component response regulator protein [Acinetobacter baumannii AYE] gi|213056114|gb|ACJ41016.1| two component transcriptional regulator, LuxR family [Acinetobacter baumannii AB0057] gi|213988921|gb|ACJ59220.1| response regulator [Acinetobacter baumannii AB307-0294] gi|332729836|gb|EGJ61170.1| response regulator receiver domain protein [Acinetobacter baumannii 6013150] gi|332734574|gb|EGJ65683.1| response regulator receiver domain protein [Acinetobacter baumannii 6013113] Length = 319 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 29/54 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309 >gi|85707170|ref|ZP_01038257.1| transcriptional regulator, LuxR family protein [Roseovarius sp. 217] gi|85668329|gb|EAQ23203.1| transcriptional regulator, LuxR family protein [Roseovarius sp. 217] Length = 180 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 26/55 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE L G TS+EI LGLS T+ Y K A N + +AK Sbjct: 120 QLTQREREVAILTCRGLTSKEIGLDLGLSYRTIEVYRARLLEKFQARNLAELVAK 174 >gi|331699320|ref|YP_004335559.1| LuxR family ATP-dependent transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954009|gb|AEA27706.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 932 Score = 35.4 bits (80), Expect = 7.0, Method: Composition-based stats. Identities = 19/48 (39%), Positives = 26/48 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT +E +LA DG ++ EI +L LS HTV +L KL +R Sbjct: 865 LTAQEAQIARLARDGLSNPEIGTRLFLSAHTVQYHLRKVFTKLGITSR 912 >gi|307332179|ref|ZP_07611263.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306882168|gb|EFN13270.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G G +++EIA +L +S TV ++ A KL A +R Q + A G Sbjct: 161 LTVREREVLVQVGGGLSNDEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAYETGL 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|300693355|ref|YP_003749328.1| response regulator, luxr family similar to vsrd [Ralstonia solanacearum PSI07] gi|299075392|emb|CBJ34687.1| response regulator, LuxR family similar to vsrD [Ralstonia solanacearum PSI07] Length = 210 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L++RE L++ G G T EIAE L +S TV+ Y G K+ N Sbjct: 149 LSDREFQTLRMLGSGRTLGEIAEALQISAKTVSVYRGRVLSKMKLRN 195 >gi|298247828|ref|ZP_06971633.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550487|gb|EFH84353.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1037 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 33/51 (64%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+ +E L+L G+T+++IAE+L +SV+TV ++ KL NR+QA Sbjct: 977 LSIQEQRVLRLLAAGWTNKDIAEELIVSVNTVKDHVKHLYRKLGINNRLQA 1027 >gi|289829321|ref|ZP_06546933.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 165 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 100 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 159 Query: 228 AIRFG 232 + +G Sbjct: 160 MMGYG 164 >gi|297201200|ref|ZP_06918597.1| regulatory protein [Streptomyces sviceus ATCC 29083] gi|297147827|gb|EFH28750.1| regulatory protein [Streptomyces sviceus ATCC 29083] Length = 350 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 28/51 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ RE S L +G+ IAE+LG+SV T A++ + L A +R Q Sbjct: 270 GISHREQSIAALLAEGHQDAVIAERLGISVRTCRAHIARLSETLGAASRTQ 320 >gi|83749846|ref|ZP_00946815.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|207744706|ref|YP_002261098.1| two component response regulator protein [Ralstonia solanacearum IPO1609] gi|83723483|gb|EAP70692.1| Transcriptional regulatory protein [Ralstonia solanacearum UW551] gi|206596113|emb|CAQ63040.1| two component response regulator protein [Ralstonia solanacearum IPO1609] Length = 232 Score = 35.4 bits (80), Expect = 7.0, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 37/68 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+A+ L+ RE L L G+T++EIA+ + LS TV ++ KL ++ +AI + Sbjct: 164 SAASPLLSAREKEVLDLITKGFTTQEIAKLMALSHFTVRTFVRRIYSKLKVTSKAEAIYE 223 Query: 228 AIRFGYIC 235 A G + Sbjct: 224 ARTLGLLA 231 >gi|255535463|ref|YP_003095834.1| hypothetical protein FIC_01324 [Flavobacteriaceae bacterium 3519-10] gi|255341659|gb|ACU07772.1| hypothetical protein FIC_01324 [Flavobacteriaceae bacterium 3519-10] Length = 214 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 35/62 (56%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + + L +RE ++LA T EIA+++ +S T++ Y S VKL+ +R+ + A Sbjct: 149 TLSDTLKDRELEFIRLACSELTYREIADQMFVSPRTIDGYRDSVFVKLNVKSRVGIVLFA 208 Query: 229 IR 230 I+ Sbjct: 209 IK 210 >gi|238765191|ref|ZP_04626122.1| HTH-type transcriptional regulator malT [Yersinia kristensenii ATCC 33638] gi|238696574|gb|EEP89360.1| HTH-type transcriptional regulator malT [Yersinia kristensenii ATCC 33638] Length = 903 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF-- 231 LT+RE L L GY++++IA +L ++ T+ ++ + KL +R A+ +A R Sbjct: 839 LTQREWQVLGLIYSGYSNDQIAGELDVAATTIKTHIRNLYQKLGVAHRQDAVQQAQRLLQ 898 Query: 232 --GYI 234 GY+ Sbjct: 899 MMGYV 903 >gi|291302034|ref|YP_003513312.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571254|gb|ADD44219.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 32/62 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L G +++EIAE + +S TV ++G KL +R Q I A G Sbjct: 156 SLTEREHDVLVQVARGRSNQEIAELIHVSQATVKVHVGRILAKLGLRDRAQVIVFAYENG 215 Query: 233 YI 234 + Sbjct: 216 VV 217 >gi|261338216|ref|ZP_05966100.1| two-component system response regulator [Bifidobacterium gallicum DSM 20093] gi|270276862|gb|EFA22716.1| two-component system response regulator [Bifidobacterium gallicum DSM 20093] Length = 230 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 27/48 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+ RE ++L GYT E+A +L +SV TV ++ + KL NR Sbjct: 170 LSSREQEVMRLIARGYTYREVAAELFISVKTVETHMSAVLRKLQLSNR 217 >gi|254522790|ref|ZP_05134845.1| two component transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14] gi|219720381|gb|EED38906.1| two component transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14] Length = 213 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 170 AAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 AAR +L+ + L L +G +++IA++LG+ + TV A++ +L NR QAI Sbjct: 135 AARLASLSAHQYRVLSLVAEGLLNKQIADRLGVQLRTVKAHMTRIMERLGVRNRAQAI 192 >gi|206560098|ref|YP_002230862.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia J2315] gi|198036139|emb|CAR52034.1| LuxR superfamily regulatory protein [Burkholderia cenocepacia J2315] Length = 897 Score = 35.4 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E + L+L +++EIA L + TV +L + KLDA +R A+ +A+ G Sbjct: 833 LTPKERAILELLARNLSNKEIAVALAVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 892 Query: 234 I 234 + Sbjct: 893 L 893 >gi|184153602|ref|YP_001841943.1| two component response regulator [Lactobacillus reuteri JCM 1112] gi|227364675|ref|ZP_03848730.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|325682211|ref|ZP_08161728.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] gi|183224946|dbj|BAG25463.1| two component response regulator [Lactobacillus reuteri JCM 1112] gi|227070285|gb|EEI08653.1| transcriptional regulator [Lactobacillus reuteri MM2-3] gi|324978050|gb|EGC15000.1| transcriptional regulator [Lactobacillus reuteri MM4-1A] Length = 217 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L GY+++EI++K+ +S TV A+ + + KL R++ + AI Sbjct: 155 LSKREKEVFPLIALGYSNKEISQKMFISTKTVEAHKANISRKLHLHGRVELVQYAIHHHL 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|182435073|ref|YP_001822792.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463589|dbj|BAG18109.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 246 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 27/51 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L ERE G G ++ EIA L LSV TV A++ KL+ NR+Q Sbjct: 174 GLAERERDVAVAVGRGASNAEIAGSLYLSVATVKAHVSRILAKLELNNRVQ 224 >gi|241205631|ref|YP_002976727.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859521|gb|ACS57188.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 241 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE CL G ++I+ LG+S HT YL +A KL A ++A++ Sbjct: 178 SLSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLR 237 Query: 233 YI 234 I Sbjct: 238 II 239 >gi|29827472|ref|NP_822106.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29604571|dbj|BAC68641.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 235 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 3/89 (3%) Query: 149 AHGACYQVITDFLELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A ++I +F+ + R L TERE L L G ++ EIAE+L L + TV Sbjct: 138 APAVTRRLIAEFVHRPEPSRPLRRTLDGVTEREREVLTLIACGLSNTEIAERLYLGIATV 197 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ KL +R Q + A G + Sbjct: 198 KTHVSHLLTKLATRDRAQLVIVAYESGLV 226 >gi|71908813|ref|YP_286400.1| LuxR family transcriptional regulator [Dechloromonas aromatica RCB] gi|71848434|gb|AAZ47930.1| transcriptional regulator, LuxR family [Dechloromonas aromatica RCB] Length = 205 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 30/50 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ERE +L G ++ E+AE+L ++ TV A++ + KL +R+Q Sbjct: 146 LSEREVQVARLVAGGASNREVAEQLSITERTVKAHMSAIFEKLGLRDRLQ 195 >gi|78066308|ref|YP_369077.1| ATP-dependent transcription regulator LuxR [Burkholderia sp. 383] gi|77967053|gb|ABB08433.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Burkholderia sp. 383] Length = 900 Score = 35.4 bits (80), Expect = 7.1, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E + L+L +++EIA L + TV +L + KLDA +R A+ +A+ G Sbjct: 836 LTPKERAILELLARNLSNKEIAVALAVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 895 Query: 234 I 234 + Sbjct: 896 L 896 >gi|16077998|ref|NP_388814.1| two-component response regulator YhcY [Bacillus subtilis subsp. subtilis str. 168] gi|221308771|ref|ZP_03590618.1| hypothetical protein Bsubs1_05153 [Bacillus subtilis subsp. subtilis str. 168] gi|221313094|ref|ZP_03594899.1| hypothetical protein BsubsN3_05089 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318020|ref|ZP_03599314.1| hypothetical protein BsubsJ_05033 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322294|ref|ZP_03603588.1| hypothetical protein BsubsS_05134 [Bacillus subtilis subsp. subtilis str. SMY] gi|81814998|sp|O07528|YHCZ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yhcZ gi|2226141|emb|CAA74433.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633256|emb|CAB12761.1| two-component response regulator [YhcY] [Bacillus subtilis subsp. subtilis str. 168] Length = 214 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L +G +++EIA L +S TV ++ + KL+ +R QA A+++ Sbjct: 148 QLTRREKDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYN 207 >gi|83943530|ref|ZP_00955989.1| probable two component response regulator transcription regulator protein [Sulfitobacter sp. EE-36] gi|83845762|gb|EAP83640.1| probable two component response regulator transcription regulator protein [Sulfitobacter sp. EE-36] Length = 213 Score = 35.4 bits (80), Expect = 7.1, Method: Compositional matrix adjust. Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ +E +L+ ++ + G + + I + L +S LTER Sbjct: 93 LSAGADGYLLKETEAAVLSRQLTQLSMGLPAISPSVARRIMEHFRLTGPVASLDGRLTER 152 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ET L L G + E+A L ++ TV Y+ KL +R +A A R G Sbjct: 153 ETEVLTLISKGLRNAEVASALNIAETTVAGYIKIVYRKLGISSRAEAAWHANRLG 207 >gi|311032412|ref|ZP_07710502.1| two-component response regulator-like protein [Bacillus sp. m3-13] Length = 210 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G +++EIA L ++ TV ++ + KL+ +R QA A++ G Sbjct: 150 LTKRELEVLAEIAKGKSNKEIASSLFITEKTVKTHVSNILAKLEVADRTQAALYAVKHG 208 >gi|290961078|ref|YP_003492260.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260650604|emb|CBG73720.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 228 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Query: 167 RSSAARNLTERETSCL-QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RS LT RE L Q+AG G +++EIAE+L +S TV ++ KL A +R Q + Sbjct: 156 RSERLATLTGREREVLVQVAG-GLSNDEIAERLEVSPLTVKTHVNRGMAKLGARDRAQLV 214 Query: 226 AKAIRFGYI 234 A G + Sbjct: 215 VFAYESGLV 223 >gi|251787751|ref|YP_003002472.1| LuxR family transcriptional regulator [Dickeya zeae Ech1591] gi|247536372|gb|ACT04993.1| transcriptional regulator, LuxR family [Dickeya zeae Ech1591] Length = 250 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++RE L A G T +EIA LG++ TV ++G+ KL +N AI + Sbjct: 180 FSQRENEILYWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNL 239 Query: 234 I 234 I Sbjct: 240 I 240 >gi|227486353|ref|ZP_03916669.1| possible response regulator [Anaerococcus lactolyticus ATCC 51172] gi|227235764|gb|EEI85779.1| possible response regulator [Anaerococcus lactolyticus ATCC 51172] Length = 196 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ G T+ +IA+ L +S T+ ++ + KL N+++ KA+ GY Sbjct: 133 LTKREEEVLKALITGKTNTQIAKDLYISERTLYHHIENIYEKLKVENKVELYGKALELGY 192 Query: 234 I 234 + Sbjct: 193 V 193 >gi|21225279|ref|NP_631058.1| regulatory protein [Streptomyces coelicolor A3(2)] gi|7649638|emb|CAB88970.1| regulatory protein [Streptomyces coelicolor A3(2)] Length = 606 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 29/49 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT R+ + LA G ++ +IAE+L LSV TV +L A +L A +R Sbjct: 543 ELTARQRQIVTLAAAGLSNRQIAERLTLSVRTVGNHLYGAYTRLGAGDR 591 >gi|86147901|ref|ZP_01066206.1| Response regulator [Vibrio sp. MED222] gi|85834328|gb|EAQ52481.1| Response regulator [Vibrio sp. MED222] Length = 209 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT ++ L + DG +++IA +L +S T+ A++ + KLD NR QA+ Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAV 201 >gi|84393053|ref|ZP_00991819.1| Response regulator [Vibrio splendidus 12B01] gi|84376305|gb|EAP93187.1| Response regulator [Vibrio splendidus 12B01] Length = 209 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT ++ L + DG +++IA +L +S T+ A++ + KLD NR QA+ Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAV 201 >gi|325290812|ref|YP_004266993.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324966213|gb|ADY56992.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 226 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE +L G ++EIA LG+ TV+ ++ + KL R++A+ +++ YI Sbjct: 168 TSREVEVARLMNKGLQNKEIAAALGIKKRTVDLHIRNIQKKLKVTTRLEAV---VKWAYI 224 >gi|325299333|ref|YP_004259250.1| transcriptional regulator, LuxR family [Bacteroides salanitronis DSM 18170] gi|324318886|gb|ADY36777.1| transcriptional regulator, LuxR family [Bacteroides salanitronis DSM 18170] Length = 268 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ R+ L L G S++IA+ L +S++TVN + L N A+ A+R Sbjct: 208 LSRRQLEILSLIAKGVPSKQIADNLNISIYTVNRHRQDILATLKVANTAAAVEIALRMNL 267 Query: 234 I 234 I Sbjct: 268 I 268 >gi|313895153|ref|ZP_07828710.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 137 str. F0430] gi|320529859|ref|ZP_08030936.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas artemidis F0399] gi|312976048|gb|EFR41506.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 137 str. F0430] gi|320137877|gb|EFW29782.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas artemidis F0399] Length = 223 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 31/62 (50%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT RE L G ++++I + LGLS TV +L S KL +R QA+ Sbjct: 155 SRGERLTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSIFHKLKVNDRTQALVYV 214 Query: 229 IR 230 ++ Sbjct: 215 LK 216 >gi|311899662|dbj|BAJ32070.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 228 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 30/62 (48%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G G ++ EIA L L TV ++ KL NR+ A+ A G Sbjct: 156 RLTPREHQVLRLLGRGRSNPEIAAALYLGEATVKTHVRRVLDKLGVRNRVHAVVFAFDHG 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|260774057|ref|ZP_05882972.1| transcriptional activator of maltose regulon MalT [Vibrio metschnikovii CIP 69.14] gi|260611018|gb|EEX36222.1| transcriptional activator of maltose regulon MalT [Vibrio metschnikovii CIP 69.14] Length = 902 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 34/55 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA++L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAQELDVAGTTIKTHIRNLYQKLNIANRKEAMHTA 893 >gi|110637589|ref|YP_677796.1| response regulator, positive activator of uhpT transcription [Cytophaga hutchinsonii ATCC 33406] gi|110280270|gb|ABG58456.1| response regulator, positive activator of uhpT transcription [Cytophaga hutchinsonii ATCC 33406] Length = 318 Score = 35.4 bits (80), Expect = 7.2, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 32/62 (51%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + A NLT RE + L YT +EIAE+L +S TV ++ + K + + + Sbjct: 249 QENCADFNLTAREREIIHLLAKAYTYKEIAEELFISDRTVAKHISNIYSKTGVSQKSELL 308 Query: 226 AK 227 AK Sbjct: 309 AK 310 >gi|299770580|ref|YP_003732606.1| response regulator [Acinetobacter sp. DR1] gi|298700668|gb|ADI91233.1| response regulator [Acinetobacter sp. DR1] Length = 319 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 29/54 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309 >gi|291618163|ref|YP_003520905.1| RcsB [Pantoea ananatis LMG 20103] gi|291153193|gb|ADD77777.1| RcsB [Pantoea ananatis LMG 20103] Length = 231 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 149 VAKLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 208 Query: 217 DAVNRI 222 N I Sbjct: 209 GVDNDI 214 >gi|260555377|ref|ZP_05827598.1| response regulator [Acinetobacter baumannii ATCC 19606] gi|260411919|gb|EEX05216.1| response regulator [Acinetobacter baumannii ATCC 19606] Length = 319 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 29/54 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309 >gi|119468892|ref|ZP_01611917.1| DNA-binding response regulator, LuxR family protein [Alteromonadales bacterium TW-7] gi|119447544|gb|EAW28811.1| DNA-binding response regulator, LuxR family protein [Alteromonadales bacterium TW-7] Length = 219 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K S LT ++ L + DG +++IA L LS T+ +++ + +KL NR QA+ Sbjct: 142 KEESKISTLTNQQRKILFMLADGLLNKQIAYDLNLSESTIKSHVSTIFLKLGVKNRTQAV 201 >gi|83747637|ref|ZP_00944673.1| Transcriptional regulator, luxR family [Ralstonia solanacearum UW551] gi|83725689|gb|EAP72831.1| Transcriptional regulator, luxR family [Ralstonia solanacearum UW551] Length = 210 Score = 35.4 bits (80), Expect = 7.3, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L++RE L++ G G T EIAE L +S TV+ Y G K+ N Sbjct: 149 LSDREFQTLRMLGSGRTLGEIAEALQISAKTVSVYRGRVLSKMKLRN 195 >gi|218710848|ref|YP_002418469.1| LuxR family transcriptional regulator [Vibrio splendidus LGP32] gi|218323867|emb|CAV20228.1| transcriptional regulator, LuxR family [Vibrio splendidus LGP32] Length = 209 Score = 35.0 bits (79), Expect = 7.3, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT ++ L + DG +++IA +L +S T+ A++ + KLD NR QA+ Sbjct: 150 LTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMTAIFRKLDVKNRTQAV 201 >gi|195941124|ref|ZP_03086506.1| transcriptional regulator MalT [Escherichia coli O157:H7 str. EC4024] Length = 166 Score = 35.0 bits (79), Expect = 7.3, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 101 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 160 Query: 228 AIRFG 232 + +G Sbjct: 161 MMGYG 165 >gi|149926201|ref|ZP_01914463.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] gi|149825019|gb|EDM84231.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] Length = 228 Score = 35.0 bits (79), Expect = 7.3, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 29/59 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G EIAE L +S T++AY KL+ + +Q + AI G Sbjct: 167 LTRRERQVLTLIAQGRPRREIAELLKVSPRTIDAYRARLLQKLNLDSSVQLVKYAISAG 225 >gi|149189059|ref|ZP_01867347.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] gi|148837022|gb|EDL53971.1| transcriptional regulator, LuxR family protein [Vibrio shilonii AK1] Length = 216 Score = 35.0 bits (79), Expect = 7.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S +LT RE L+ G ++ +I+E L ++ TV ++L KL NR+QAIA Sbjct: 150 SPTVVDLTAREIEILRCLQSGASNLQISEDLFITESTVKSHLYQVFRKLSVKNRLQAIAW 209 Query: 228 A 228 A Sbjct: 210 A 210 >gi|146313463|ref|YP_001178537.1| transcriptional regulator MalT [Enterobacter sp. 638] gi|189028609|sp|A4WFK6|MALT_ENT38 RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|145320339|gb|ABP62486.1| regulatory protein, LuxR [Enterobacter sp. 638] Length = 901 Score = 35.0 bits (79), Expect = 7.3, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 Query: 228 AIRFG 232 + +G Sbjct: 896 MMGYG 900 >gi|116253119|ref|YP_768957.1| AHL-dependent transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115257767|emb|CAK08865.1| putative AHL-dependent transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 241 Score = 35.0 bits (79), Expect = 7.3, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE CL G ++I+ LG+S HT YL +A KL A ++A++ Sbjct: 178 SLSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAASRAVQLR 237 Query: 233 YI 234 I Sbjct: 238 II 239 >gi|300696951|ref|YP_003747612.1| response regulator, LuxR family similar to vsrD [Ralstonia solanacearum CFBP2957] gi|299073675|emb|CBJ53195.1| response regulator, LuxR family similar to vsrD [Ralstonia solanacearum CFBP2957] Length = 210 Score = 35.0 bits (79), Expect = 7.4, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L++RE L++ G G T EIAE L +S TV+ Y G K+ N Sbjct: 149 LSDREFQTLRMLGSGRTLGEIAEALQISAKTVSVYRGRVLSKMKLRN 195 >gi|260550575|ref|ZP_05824784.1| response regulator [Acinetobacter sp. RUH2624] gi|260406286|gb|EEW99769.1| response regulator [Acinetobacter sp. RUH2624] Length = 319 Score = 35.0 bits (79), Expect = 7.4, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 29/54 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309 >gi|229514529|ref|ZP_04403990.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae TMA 21] gi|229348509|gb|EEO13467.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae TMA 21] Length = 902 Score = 35.0 bits (79), Expect = 7.4, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 893 >gi|149908474|ref|ZP_01897137.1| Response regulator [Moritella sp. PE36] gi|149808637|gb|EDM68572.1| Response regulator [Moritella sp. PE36] Length = 214 Score = 35.0 bits (79), Expect = 7.4, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +NL+ERE + + G +IAE+L L+ TVNAY KL+ ++ AIR Sbjct: 147 QNLSERELQIMMMITKGQRVVDIAEQLHLNSKTVNAYRYRLFSKLNINGDVELTHLAIRH 206 Query: 232 GYI 234 G + Sbjct: 207 GIL 209 >gi|121727964|ref|ZP_01681004.1| malT regulatory protein [Vibrio cholerae V52] gi|147672133|ref|YP_001214961.1| transcriptional regulator MalT [Vibrio cholerae O395] gi|121629736|gb|EAX62154.1| malT regulatory protein [Vibrio cholerae V52] gi|146314516|gb|ABQ19056.1| malT regulatory protein [Vibrio cholerae O395] gi|227014648|gb|ACP10857.1| malT regulatory protein [Vibrio cholerae O395] Length = 921 Score = 35.0 bits (79), Expect = 7.4, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 858 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 912 >gi|118468504|ref|YP_887601.1| regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118169791|gb|ABK70687.1| regulatory protein [Mycobacterium smegmatis str. MC2 155] Length = 924 Score = 35.0 bits (79), Expect = 7.4, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 27/50 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT +E +LA DG ++ EI +L +S TV +LG KL +R Q Sbjct: 864 LTAQEAHIARLARDGLSNPEIGARLFISARTVQYHLGKVFTKLGITSRSQ 913 >gi|194466362|ref|ZP_03072349.1| two component transcriptional regulator, LuxR family [Lactobacillus reuteri 100-23] gi|194453398|gb|EDX42295.1| two component transcriptional regulator, LuxR family [Lactobacillus reuteri 100-23] Length = 217 Score = 35.0 bits (79), Expect = 7.4, Method: Compositional matrix adjust. Identities = 19/61 (31%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L GY+++EI++K+ +S TV A+ + + KL R++ + AI Sbjct: 155 LSKREKEVFPLIALGYSNKEISQKMFISTKTVEAHKANISRKLHLHGRVELVQYAIHHHL 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|134299954|ref|YP_001113450.1| two component LuxR family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052654|gb|ABO50625.1| two component transcriptional regulator, LuxR family [Desulfotomaculum reducens MI-1] Length = 218 Score = 35.0 bits (79), Expect = 7.4, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 31/58 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 NLTERE L+ G +++ IA L +S TV +L + K+ +R QA AI+ Sbjct: 155 NLTEREIEVLKQVAKGQSNKAIANALYISEKTVKNHLTNIFQKIGVADRTQAALYAIK 212 >gi|311893888|dbj|BAJ26296.1| putative LuxR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 117 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G G ++ E+A +L LS TV ++ KL +R QA+ A G Sbjct: 50 LTPRELEVLALLGRGLSTTELAGELTLSEATVKTHVARIFAKLGLRDRAQAVVVAYETGL 109 Query: 234 IC 235 + Sbjct: 110 VA 111 >gi|326775711|ref|ZP_08234976.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326656044|gb|EGE40890.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 246 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 27/51 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L ERE G G ++ EIA L LSV TV A++ KL+ NR+Q Sbjct: 174 GLAERERDVAVAVGRGASNAEIAGSLYLSVATVKAHVSRILAKLELNNRVQ 224 >gi|262168946|ref|ZP_06036640.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae RC27] gi|262022645|gb|EEY41352.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae RC27] Length = 902 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 893 >gi|290955012|ref|YP_003486194.1| luxR family two-component response regulator [Streptomyces scabiei 87.22] gi|260644538|emb|CBG67623.1| putative luxR family two-component response regulator [Streptomyces scabiei 87.22] Length = 230 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 31/60 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ A LT RE L L G+G T+ +I ++L L+ TV ++ KL R+QA Sbjct: 155 EREPEALPGLTGREREILALIGEGLTNRQIGQRLFLAEKTVKNHISRLLAKLGVERRVQA 214 >gi|238754089|ref|ZP_04615447.1| HTH-type transcriptional regulator malT [Yersinia ruckeri ATCC 29473] gi|238707585|gb|EEP99944.1| HTH-type transcriptional regulator malT [Yersinia ruckeri ATCC 29473] Length = 904 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 18/58 (31%), Positives = 34/58 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L GY++++IA +L ++ T+ ++ + KL +R +A+ +A R Sbjct: 839 LTQREWQVLGLIYSGYSNDQIAGELDVAATTIKTHIRNLYQKLGVAHRQEAVQQAQRL 896 >gi|227811644|ref|YP_002811654.1| malT regulatory protein [Vibrio cholerae M66-2] gi|227010786|gb|ACP06997.1| malT regulatory protein [Vibrio cholerae M66-2] Length = 916 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 853 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 907 >gi|193077065|gb|ABO11822.2| putative two-component response regulator protein [Acinetobacter baumannii ATCC 17978] Length = 319 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 29/54 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309 >gi|184157756|ref|YP_001846095.1| response regulator [Acinetobacter baumannii ACICU] gi|332876442|ref|ZP_08444209.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] gi|183209350|gb|ACC56748.1| Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Acinetobacter baumannii ACICU] gi|322508066|gb|ADX03520.1| Putative two-component response regulator protein [Acinetobacter baumannii 1656-2] gi|323517648|gb|ADX92029.1| response regulator [Acinetobacter baumannii TCDC-AB0715] gi|332735300|gb|EGJ66360.1| response regulator receiver domain protein [Acinetobacter baumannii 6014059] Length = 319 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 29/54 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309 >gi|254850281|ref|ZP_05239631.1| transcriptional regulator MalT [Vibrio cholerae MO10] gi|254845986|gb|EET24400.1| transcriptional regulator MalT [Vibrio cholerae MO10] Length = 921 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 858 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 912 >gi|149909623|ref|ZP_01898276.1| DNA-binding nitrate/nitrite response regulator [Moritella sp. PE36] gi|149807327|gb|EDM67280.1| DNA-binding nitrate/nitrite response regulator [Moritella sp. PE36] Length = 215 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 5/108 (4%) Query: 129 NGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCLQ 183 +GY++ SE +L ++ ++ A + + +L+ + ++ LT+RE L Sbjct: 103 DGYLLKDSEPDLLLEQLHDVLSGQQALSESLVGYLDCLHEDNNFEEKLAKLTKRENQILL 162 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 GY+++ +A L +S TV ++ S KL+A +R++A + F Sbjct: 163 EISKGYSNKHVASNLHISEGTVKVHVKSLLKKLEASSRVEAAVMYLEF 210 >gi|111023879|ref|YP_706851.1| hypothetical protein RHA1_ro06927 [Rhodococcus jostii RHA1] gi|110823409|gb|ABG98693.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 530 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 33/69 (47%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R+ LT+RE L+L G ++ EIA L ++ T ++ KL NR QA Sbjct: 452 RRTPWPAGLTDREVEILRLVAQGRSNREIAADLFIAEKTARNHVERVYAKLGVNNRTQAS 511 Query: 226 AKAIRFGYI 234 AI G + Sbjct: 512 LAAIDRGLV 520 >gi|124265550|ref|YP_001019554.1| two-component response regulator [Methylibium petroleiphilum PM1] gi|124258325|gb|ABM93319.1| two-component response regulator [Methylibium petroleiphilum PM1] Length = 210 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 26/44 (59%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 L + SAA L+ RE ++L G T +EIA+ L LSV TV+ Sbjct: 138 LLDPQDSAAHGLSPREFEVMRLLVGGRTPQEIAQSLSLSVKTVH 181 >gi|329938540|ref|ZP_08287965.1| luxR family two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329302513|gb|EGG46404.1| luxR family two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 28/52 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L L G+G T+ +I ++L L+ TV ++ KL R+QA Sbjct: 163 GLTPREREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRVQA 214 >gi|327394558|dbj|BAK11980.1| capsular synthesis regulator component B RcsB [Pantoea ananatis AJ13355] Length = 228 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 34/66 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 146 VAKLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 205 Query: 217 DAVNRI 222 N I Sbjct: 206 GVDNDI 211 >gi|330809042|ref|YP_004353504.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377150|gb|AEA68500.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 223 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 20/54 (37%), Positives = 31/54 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 NLTERE L L G G ++++I +LG+S TV Y+ + K +R++ A Sbjct: 156 NLTEREGQTLALIGAGMSNKQIGRELGISDGTVKIYVRNLLQKFSLHSRLELAA 209 >gi|317489390|ref|ZP_07947902.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325832371|ref|ZP_08165345.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] gi|316911497|gb|EFV33094.1| luxR family Bacterial regulatory protein [Eggerthella sp. 1_3_56FAA] gi|325486007|gb|EGC88462.1| transcriptional regulator, LuxR family [Eggerthella sp. HGA1] Length = 488 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 35/67 (52%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D LE + A LT RE+ L G G T+ I+EKL +S +TV ++ S KLD Sbjct: 411 DALEARCAHVAEAHGLTPRESEILVHLGQGRTARAISEKLVVSENTVKYHIKSIYQKLDV 470 Query: 219 VNRIQAI 225 +R + I Sbjct: 471 HSRDEVI 477 >gi|296388005|ref|ZP_06877480.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAb1] gi|313108838|ref|ZP_07794823.1| acylhomoserine lactone dependent transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310881325|gb|EFQ39919.1| acylhomoserine lactone dependent transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 234 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQ DG +S EIA L +S TVN + + K DA N+ A A A G Sbjct: 174 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKTLAAAYAAALGL 233 Query: 234 I 234 I Sbjct: 234 I 234 >gi|294140574|ref|YP_003556552.1| LuxR family DNA-binding response regulator [Shewanella violacea DSS12] gi|293327043|dbj|BAJ01774.1| DNA-binding response regulator, LuxR family [Shewanella violacea DSS12] Length = 219 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +L ++ + H ++ D L ++ + +LT ++ LQ+ +G +++IA LG Sbjct: 124 VLYGDIWLPDHAEIQEIQEDATALVARKLA---DLTPQQYKVLQMFAEGLLNKQIAYDLG 180 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAI 225 +S T+ A+ + KL NR QA+ Sbjct: 181 VSEATIKAHATAIFRKLGVRNRTQAV 206 >gi|238898863|ref|YP_002924545.1| response regulator (positive) in two-component regulatory system with RcsC and YojN [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466623|gb|ACQ68397.1| response regulator (positive) in two-component regulatory system with RcsC and YojN [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 214 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 LE + ++L+ +E L+L +G EIA++L S+ T++ SA VKL Sbjct: 137 LLEKIRSNGDGKKSLSAKEGEVLRLFSEGSLVTEIAQRLNRSIKTISTQKKSAMVKLGVD 196 Query: 220 NRI 222 N I Sbjct: 197 NDI 199 >gi|229506806|ref|ZP_04396315.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae BX 330286] gi|229357157|gb|EEO22075.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae BX 330286] Length = 902 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 893 >gi|229527993|ref|ZP_04417384.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae 12129(1)] gi|262192188|ref|ZP_06050347.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae CT 5369-93] gi|229334355|gb|EEN99840.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae 12129(1)] gi|262031919|gb|EEY50498.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae CT 5369-93] Length = 902 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 893 >gi|256828832|ref|YP_003157560.1| LuxR family transcriptional regulator [Desulfomicrobium baculatum DSM 4028] gi|256578008|gb|ACU89144.1| transcriptional regulator, LuxR family [Desulfomicrobium baculatum DSM 4028] Length = 439 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 22/50 (44%), Positives = 25/50 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 R LT E + G TS+EIA LGLSV T N Y S KL V + Sbjct: 371 RTLTGNEIRVADMVRSGMTSKEIAVALGLSVTTANFYRASIRKKLRLVGK 420 >gi|229820676|ref|YP_002882202.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566589|gb|ACQ80440.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 220 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 28/52 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L L G T+ IAE+LGLS TV + KL A +R++A Sbjct: 148 GLTPRERQVLDLLVKGLTNRAIAERLGLSGKTVANNVSVILGKLGATDRVEA 199 >gi|134103132|ref|YP_001108793.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291003925|ref|ZP_06561898.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915755|emb|CAM05868.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 134 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 30/56 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 +L +R LT RE L L G+ ++EIAE+L ++ V ++G+ KLD Sbjct: 59 QLLTRRHDPISALTPREREVLSLMAAGHANQEIAERLVVTERAVLEHVGNIFAKLD 114 >gi|229510399|ref|ZP_04399879.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae B33] gi|229605280|ref|YP_002875984.1| transcriptional regulator MalT [Vibrio cholerae MJ-1236] gi|255746153|ref|ZP_05420100.1| transcriptional activator of maltose regulon MalT [Vibrio cholera CIRS 101] gi|262158642|ref|ZP_06029756.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae INDRE 91/1] gi|46577129|sp|Q9KNF3|MALT_VIBCH RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|229352844|gb|EEO17784.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae B33] gi|229371766|gb|ACQ62188.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae MJ-1236] gi|255735907|gb|EET91305.1| transcriptional activator of maltose regulon MalT [Vibrio cholera CIRS 101] gi|262029522|gb|EEY48172.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae INDRE 91/1] Length = 902 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 893 >gi|84497905|ref|ZP_00996702.1| regulatory protein, LuxR:Response regulator receiver [Janibacter sp. HTCC2649] gi|84381405|gb|EAP97288.1| regulatory protein, LuxR:Response regulator receiver [Janibacter sp. HTCC2649] Length = 218 Score = 35.0 bits (79), Expect = 7.5, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 S L++RE LQL G G ++EIA +L +S +TV ++ + KL+ +RI+ Sbjct: 146 STTPRLSDRELGVLQLVGQGKGNKEIAAQLFISQNTVKNHIQNIRNKLNVGSRIE 200 >gi|324997312|ref|ZP_08118424.1| response regulator receiver protein [Pseudonocardia sp. P1] Length = 213 Score = 35.0 bits (79), Expect = 7.6, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE ++ G T+ EIA L +S+ TV +L + KLDA NR++ A A Sbjct: 152 LSARELDVVRAVARGRTNHEIAGDLFVSLSTVKTHLTNIGSKLDARNRVEIAAWA 206 >gi|308070500|ref|YP_003872105.1| Germination protein gerE [Paenibacillus polymyxa E681] gi|305859779|gb|ADM71567.1| Germination protein gerE [Paenibacillus polymyxa E681] Length = 75 Score = 35.0 bits (79), Expect = 7.6, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L T+ +IA +L +S TV ++ + KL+ R QA+ + IR G Sbjct: 13 LTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIRLG 71 >gi|295097027|emb|CBK86117.1| ATP-dependent transcriptional regulator [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 901 Score = 35.0 bits (79), Expect = 7.6, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 Query: 228 AIRFG 232 + +G Sbjct: 896 MMGYG 900 >gi|311743637|ref|ZP_07717443.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311312767|gb|EFQ82678.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 220 Score = 35.0 bits (79), Expect = 7.6, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 46/78 (58%), Gaps = 1/78 (1%) Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 +++ +F+++ + + AA +LT RE L+ G+++ EIA +L +S +TV ++ + Sbjct: 137 ATKLLDEFVQISRTPAPAA-SLTARELQVLRHVAKGFSNREIAGELFISENTVKNHIRNI 195 Query: 213 TVKLDAVNRIQAIAKAIR 230 KL +R++A A+R Sbjct: 196 LEKLQMKSRMEAAMYAVR 213 >gi|320009809|gb|ADW04659.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 225 Score = 35.0 bits (79), Expect = 7.6, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 30/59 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT++E L L G+G T+ I E+L L+ T+ Y+ S KL R QA A R Sbjct: 162 GLTDQERKILDLIGEGLTNRVIGERLHLAEKTIKNYVSSLLSKLGMERRSQAAAYVARL 220 >gi|256380511|ref|YP_003104171.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924814|gb|ACU40325.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 216 Score = 35.0 bits (79), Expect = 7.6, Method: Compositional matrix adjust. Identities = 33/105 (31%), Positives = 44/105 (41%), Gaps = 10/105 (9%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN-------LTERE 178 GYV T L V+ A G ++ L+ F R AA LT RE Sbjct: 101 RGYVTKTISSQELVRAVVRVAEGDAVFSPRLAGFVLDAFADRPGAAPISDPELDLLTPRE 160 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+L GY +EIA +L +SV TV ++ S K NR + Sbjct: 161 RDVLRLLARGYAYKEIASELFISVKTVETHVSSVLRKTQLSNRYE 205 >gi|229522692|ref|ZP_04412108.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae TM 11079-80] gi|229340677|gb|EEO05683.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae TM 11079-80] Length = 902 Score = 35.0 bits (79), Expect = 7.6, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 893 >gi|296131165|ref|YP_003638415.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022980|gb|ADG76216.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 254 Score = 35.0 bits (79), Expect = 7.6, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 7/82 (8%) Query: 160 FLELFKKRSS-------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 +E F +R + LT RE +L G ++ E AE+L L TV +++ S Sbjct: 142 LIEEFARRPTVRMEATDGPAELTARERDVFRLLVQGLSTAEAAERLTLGDSTVKSHVQSL 201 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA+ A G + Sbjct: 202 YRKLGVRDRVQAVIYAYEHGLV 223 >gi|15600782|ref|NP_232412.1| transcriptional regulator MalT [Vibrio cholerae O1 biovar eltor str. N16961] gi|153821185|ref|ZP_01973852.1| malT regulatory protein [Vibrio cholerae B33] gi|9657389|gb|AAF95925.1| malT regulatory protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|126521244|gb|EAZ78467.1| malT regulatory protein [Vibrio cholerae B33] Length = 921 Score = 35.0 bits (79), Expect = 7.6, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 858 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 912 >gi|300728575|ref|ZP_07061933.1| transcriptional regulator [Prevotella bryantii B14] gi|299774144|gb|EFI70778.1| transcriptional regulator [Prevotella bryantii B14] Length = 213 Score = 35.0 bits (79), Expect = 7.7, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 5/111 (4%) Query: 128 KNGYVIFTSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 KN +IF + +E I +A C++ T+ L + + A NLT E L+ Sbjct: 97 KNIGIIFKDSQISYLHEAIQDAVQKRRYICHRA-TEILIDSQLKEEPATNLTSTEIEILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIA + S+HT+N + + KL +A+ A R G + Sbjct: 156 SIAQGKTTKEIAAERYSSIHTINTHRKNIFKKLKVNTAHEAVKYAFRAGLV 206 >gi|256396087|ref|YP_003117651.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362313|gb|ACU75810.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 213 Score = 35.0 bits (79), Expect = 7.7, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 34/70 (48%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + R A LT RE L DG ++ +I ++L ++ TV +L KLD +R A Sbjct: 140 RMRQPAPVVLTTREVDVLNGVADGLSNADIGKRLVIAEATVKTHLLRVFAKLDVSDRTHA 199 Query: 225 IAKAIRFGYI 234 + A+ G + Sbjct: 200 VVTALERGLL 209 >gi|226311283|ref|YP_002771177.1| germination protein [Brevibacillus brevis NBRC 100599] gi|226094231|dbj|BAH42673.1| germination protein [Brevibacillus brevis NBRC 100599] Length = 76 Score = 35.0 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L T++EIA +L +S TV ++ + KL R QA+ + +R G Sbjct: 14 LTNREREVFELLVQDKTTKEIAGQLFISEKTVRNHISNVMQKLGVKGRSQAVVELVRLG 72 >gi|213615847|ref|ZP_03371673.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 401 Score = 35.0 bits (79), Expect = 7.7, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 336 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 395 Query: 228 AIRFG 232 + +G Sbjct: 396 MMGYG 400 >gi|159044443|ref|YP_001533237.1| putative response regulator receiver protein [Dinoroseobacter shibae DFL 12] gi|157912203|gb|ABV93636.1| putative response regulator receiver protein [Dinoroseobacter shibae DFL 12] Length = 204 Score = 35.0 bits (79), Expect = 7.7, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--ARNLTERETSCLQLAGD 187 G++ T + N V A G Y + DFL ++ AR L+ERE L Sbjct: 99 GFLPKTMAAKSMVNAVRFMAMGETY-IPLDFLNAVEETPDIPLARQLSEREHQVLGGLCR 157 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G +++EIA +L L T+ ++ + K+DA NR A Sbjct: 158 GLSNKEIARELDLQEVTIKLHVKTLCRKIDAKNRTHA 194 >gi|608485|gb|AAA89073.1| VSMR [Pseudomonas aeruginosa] Length = 241 Score = 35.0 bits (79), Expect = 7.7, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQ DG +S EIA L +S TVN + + K DA N+ A A A G Sbjct: 181 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKTLAAAYAAALGL 240 Query: 234 I 234 I Sbjct: 241 I 241 >gi|78778557|ref|YP_396669.1| two component LuxR family transcriptional regulator [Prochlorococcus marinus str. MIT 9312] gi|78712056|gb|ABB49233.1| two component transcriptional regulator, LuxR family [Prochlorococcus marinus str. MIT 9312] Length = 242 Score = 35.0 bits (79), Expect = 7.7, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 29/55 (52%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 T RE S LQL +G ++EIA +L S+ V Y+ +K +R + + A+ Sbjct: 182 TPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYAL 236 >gi|71282148|ref|YP_268761.1| LuxR family DNA-binding response regulator [Colwellia psychrerythraea 34H] gi|71147888|gb|AAZ28361.1| DNA-binding response regulator, LuxR family [Colwellia psychrerythraea 34H] Length = 208 Score = 35.0 bits (79), Expect = 7.7, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L DG S+ IA +L LS T++++ + KL N ++ AI G Sbjct: 148 LTKREEEVLILIADGLGSDAIALRLDLSKRTIDSHRANIRKKLGLTNSVELTRYAIEQGL 207 Query: 234 I 234 I Sbjct: 208 I 208 >gi|332670605|ref|YP_004453613.1| LuxR family ATP-dependent transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332339643|gb|AEE46226.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Cellulomonas fimi ATCC 484] Length = 919 Score = 35.0 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT+RE + L ++ EIA+ L +SV+TV A+L S KL+ +R A+ + Sbjct: 855 AGALTDRELAVLTALATMQSNAEIADDLFVSVNTVKAHLKSLFRKLEVGSRRAAVRRGRE 914 Query: 231 FGYI 234 G + Sbjct: 915 LGLL 918 >gi|317122922|ref|YP_004102925.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592902|gb|ADU52198.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 259 Score = 35.0 bits (79), Expect = 7.7, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 32/63 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R LT R+ L+L +G ++ EIA +L LS TV + +L +R+QA+ Sbjct: 176 PRLDGPEPLTARQREVLELLAEGLSNREIAARLHLSEGTVKNVVSEIYARLQVRDRVQAV 235 Query: 226 AKA 228 +A Sbjct: 236 LRA 238 >gi|310643684|ref|YP_003948442.1| transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309248634|gb|ADO58201.1| Transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 75 Score = 35.0 bits (79), Expect = 7.7, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L T+ +IA +L +S TV ++ + KL+ R QA+ + IR G Sbjct: 13 LTHREREVFELLVQDKTTRDIAGQLFISEKTVRNHISNVMQKLNVKGRSQAVVELIRLG 71 >gi|296105114|ref|YP_003615260.1| transcriptional regulator MalT [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059573|gb|ADF64311.1| transcriptional regulator MalT [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 885 Score = 35.0 bits (79), Expect = 7.7, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 820 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 879 Query: 228 AIRFG 232 + +G Sbjct: 880 MMGYG 884 >gi|229526343|ref|ZP_04415747.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae bv. albensis VL426] gi|229336501|gb|EEO01519.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae bv. albensis VL426] Length = 902 Score = 35.0 bits (79), Expect = 7.7, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 893 >gi|226363981|ref|YP_002781763.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226242470|dbj|BAH52818.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 322 Score = 35.0 bits (79), Expect = 7.7, Method: Compositional matrix adjust. Identities = 21/54 (38%), Positives = 32/54 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE ++L G ++ IA +L ++V TV +++ KL A NR + IAK Sbjct: 263 LTEREADVVRLILTGASNSAIAAELVITVDTVKSHVKRILRKLGATNRAELIAK 316 >gi|297202869|ref|ZP_06920266.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197715208|gb|EDY59242.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 230 Score = 35.0 bits (79), Expect = 7.7, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 4/61 (6%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G T++EIA +L +S TV ++ + K +R A+A+R+ Sbjct: 161 GLTAREVEVLALIAEGLTNQEIARELHVSTATVKTHINNLFAKTGIKDR----AQAVRYA 216 Query: 233 Y 233 Y Sbjct: 217 Y 217 >gi|297579841|ref|ZP_06941768.1| malT regulatory protein [Vibrio cholerae RC385] gi|297535487|gb|EFH74321.1| malT regulatory protein [Vibrio cholerae RC385] Length = 921 Score = 35.0 bits (79), Expect = 7.7, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 858 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 912 >gi|302542220|ref|ZP_07294562.1| nitrate/nitrite response regulator protein NarL [Streptomyces hygroscopicus ATCC 53653] gi|302459838|gb|EFL22931.1| nitrate/nitrite response regulator protein NarL [Streptomyces himastatinicus ATCC 53653] Length = 258 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 31/60 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G +IA++L ++ TV ++GS KL +R QAI +A G Sbjct: 195 TLTAREREVLDLLAGGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVHDRAQAIVRAREAG 254 >gi|325678873|ref|ZP_08158471.1| transcriptional regulator, LuxR family [Ruminococcus albus 8] gi|324109377|gb|EGC03595.1| transcriptional regulator, LuxR family [Ruminococcus albus 8] Length = 209 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 TERE L++ G T++++AE+LG+S +TV +++ S K +R + KA G Sbjct: 146 TERELEILRVVTTGATNQQVAEQLGISENTVKSHVRSMLDKTGFRSRTELAIKARVIG 203 >gi|291447955|ref|ZP_06587345.1| LuxR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291350902|gb|EFE77806.1| LuxR-family transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 1092 Score = 35.0 bits (79), Expect = 7.8, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A+ LT RE +L G+T+ +IAE+L +S T + ++ + KL +R +A A A Sbjct: 1025 ASFGLTPREQDVHRLVAAGHTNRKIAEELFISPKTASVHVSNILAKLGVSSRGEAAALAH 1084 Query: 230 RF 231 R Sbjct: 1085 RL 1086 >gi|229517470|ref|ZP_04406915.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae RC9] gi|229345506|gb|EEO10479.1| transcriptional activator of maltose regulon MalT [Vibrio cholerae RC9] Length = 902 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 893 >gi|254224628|ref|ZP_04918244.1| malT regulatory protein [Vibrio cholerae V51] gi|125622691|gb|EAZ51009.1| malT regulatory protein [Vibrio cholerae V51] Length = 921 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 858 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 912 >gi|121585908|ref|ZP_01675701.1| malT regulatory protein [Vibrio cholerae 2740-80] gi|153816748|ref|ZP_01969415.1| malT regulatory protein [Vibrio cholerae NCTC 8457] gi|298499882|ref|ZP_07009688.1| malT regulatory protein [Vibrio cholerae MAK 757] gi|121549844|gb|EAX59864.1| malT regulatory protein [Vibrio cholerae 2740-80] gi|126512767|gb|EAZ75361.1| malT regulatory protein [Vibrio cholerae NCTC 8457] gi|297541863|gb|EFH77914.1| malT regulatory protein [Vibrio cholerae MAK 757] Length = 921 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 858 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 912 >gi|114765164|ref|ZP_01444308.1| DNA-binding response regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114542439|gb|EAU45466.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 204 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 33/54 (61%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A++LT+RE L+ +G +++EIA L ++ T+ ++ + KLD NR QA Sbjct: 141 AKSLTKREMEVLKGLTEGKSNKEIARDLEITEPTIKLHVKTLYRKLDVNNRTQA 194 >gi|16263297|ref|NP_436090.1| Response regulator [Sinorhizobium meliloti 1021] gi|307304384|ref|ZP_07584135.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318091|ref|ZP_07597527.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|14523975|gb|AAK65502.1| Response regulator [Sinorhizobium meliloti 1021] gi|306896132|gb|EFN26882.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306902586|gb|EFN33180.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 227 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 30/58 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT R+ LQL G++++EIA KL L TV ++ + L NR +A A R Sbjct: 162 LTPRQREVLQLLVQGFSNKEIARKLKLGEGTVKIHMAALFRSLRVRNRQEAAAAGARL 219 >gi|327190884|gb|EGE57942.1| putative two-component response regulator protein [Rhizobium etli CNPAF512] Length = 215 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 38/62 (61%), Gaps = 3/62 (4%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT +++ L + +G +++IA +LG+S T+ A++ + +KL+ +R QA+ I+ G Sbjct: 151 TLTPQQSRVLTMLAEGLLNKQIAYELGVSEATIKAHVSAILLKLNVDSRTQAV---IQLG 207 Query: 233 YI 234 I Sbjct: 208 KI 209 >gi|315642413|ref|ZP_07896990.1| LuxR family DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315482290|gb|EFU72845.1| LuxR family DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 202 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 1/75 (1%) Query: 162 ELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 EL A +N LT+RE S L G ++ ++AE+L LS T+ Y+ S K + Sbjct: 128 ELVTSVLRAEKNPLTKREMSVLAGLQTGASTAKMAEELFLSEGTLRNYISSILSKTGTHS 187 Query: 221 RIQAIAKAIRFGYIC 235 RI+AI A + G+I Sbjct: 188 RIEAINIAKKNGWIA 202 >gi|299529582|ref|ZP_07043019.1| transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] gi|298722445|gb|EFI63365.1| transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] Length = 392 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 25/44 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LT E Q +G+T +E AE+ GLS+HT + SA VK+ Sbjct: 326 RLTLAEAQLAQALINGWTLQEFAERQGLSIHTARSQFKSAAVKV 369 >gi|289705339|ref|ZP_06501735.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557854|gb|EFD51149.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 221 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE ++ G ++ EIA L L+ TV +++G K +R+Q + +A R G Sbjct: 157 RLTERELDVVRELAKGASNAEIAGALFLAEATVKSHIGKVLDKWQVRDRVQILIRAARAG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|261341918|ref|ZP_05969776.1| maltose regulon activator MalT [Enterobacter cancerogenus ATCC 35316] gi|288315822|gb|EFC54760.1| maltose regulon activator MalT [Enterobacter cancerogenus ATCC 35316] Length = 901 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 Query: 228 AIRFG 232 + +G Sbjct: 896 MMGYG 900 >gi|213423632|ref|ZP_03356612.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 363 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 298 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 357 Query: 228 AIRFG 232 + +G Sbjct: 358 MMGYG 362 >gi|198276688|ref|ZP_03209219.1| hypothetical protein BACPLE_02884 [Bacteroides plebeius DSM 17135] gi|198270213|gb|EDY94483.1| hypothetical protein BACPLE_02884 [Bacteroides plebeius DSM 17135] Length = 195 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA- 226 + A L+ RE L+L G ++EIA+KL +S+ TV ++ + T KL + + +A Sbjct: 124 TDAEHELSAREIEVLRLVTKGLINKEIADKLHISLTTVISHRKNITEKL-GIKSVSGLAI 182 Query: 227 KAIRFGYI 234 A+ GYI Sbjct: 183 YAVMHGYI 190 >gi|153212790|ref|ZP_01948426.1| malT regulatory protein [Vibrio cholerae 1587] gi|153827860|ref|ZP_01980527.1| malT regulatory protein [Vibrio cholerae 623-39] gi|254284743|ref|ZP_04959710.1| malT regulatory protein [Vibrio cholerae AM-19226] gi|124116303|gb|EAY35123.1| malT regulatory protein [Vibrio cholerae 1587] gi|148876705|gb|EDL74840.1| malT regulatory protein [Vibrio cholerae 623-39] gi|150425528|gb|EDN17304.1| malT regulatory protein [Vibrio cholerae AM-19226] Length = 921 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 858 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 912 >gi|74317308|ref|YP_315048.1| two component LuxR family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74056803|gb|AAZ97243.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus denitrificans ATCC 25259] Length = 209 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 20/75 (26%), Positives = 36/75 (48%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 F ++ + L++RE ++L G + +IA+KL LS T++ Y + KL Sbjct: 135 FEKILTDERAPHEQLSDREFQIVRLIAQGESLNQIADKLSLSAKTISTYKARSMQKLGIS 194 Query: 220 NRIQAIAKAIRFGYI 234 N + + AI +I Sbjct: 195 NHTELVRYAIAHHWI 209 >gi|298384248|ref|ZP_06993808.1| transcriptional regulator [Bacteroides sp. 1_1_14] gi|298262527|gb|EFI05391.1| transcriptional regulator [Bacteroides sp. 1_1_14] Length = 216 Score = 35.0 bits (79), Expect = 7.9, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 5/119 (4%) Query: 120 FPVRLGFHKN-GYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFKKRSSAARNLT 175 F RLG KN G ++ S + + + A G CYQ IT+ L R LT Sbjct: 92 FIRRLGVEKNVGMILKESSGEEIRSALKCMALGERFLCYQ-ITELLISNSGRPEHHSVLT 150 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ET L+L G + +EIA + SVHT+ + + KL N +A A+R G + Sbjct: 151 ATETDILKLIARGKSVKEIAAERISSVHTIVTHKKNIFRKLGVNNVYEATRYALRAGLV 209 >gi|297156972|gb|ADI06684.1| LuxR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 1039 Score = 35.0 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + A LT RE L+L G ++ +IAE+L +S T + ++ + KL+ R +A A A Sbjct: 964 AEALGLTPRERDVLRLVALGRSNRQIAEELFISPKTASVHVSNILAKLEVSGRGEAAAVA 1023 Query: 229 IRF 231 R Sbjct: 1024 HRL 1026 >gi|311742184|ref|ZP_07715994.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311314677|gb|EFQ84584.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 219 Score = 35.0 bits (79), Expect = 7.9, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 29/57 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT E L L GDG T+ +IAE++ L+ TV Y+ KL R QA A + Sbjct: 159 LTPTERRILHLIGDGLTNRQIAEEIDLAEKTVKNYVSHLLNKLGLERRTQAAVLATK 215 >gi|283835813|ref|ZP_06355554.1| hypothetical protein CIT292_10211 [Citrobacter youngae ATCC 29220] gi|291067982|gb|EFE06091.1| maltose regulon activator MalT [Citrobacter youngae ATCC 29220] Length = 901 Score = 35.0 bits (79), Expect = 7.9, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQKLLK 895 Query: 228 AIRFG 232 + +G Sbjct: 896 MMGYG 900 >gi|264676760|ref|YP_003276666.1| LuxR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262207272|gb|ACY31370.1| transcriptional regulator, LuxR family [Comamonas testosteroni CNB-2] Length = 392 Score = 35.0 bits (79), Expect = 7.9, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 25/44 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LT E Q +G+T +E AE+ GLS+HT + SA VK+ Sbjct: 326 RLTLAEAQLAQALINGWTLQEFAERQGLSIHTARSQFKSAAVKV 369 >gi|302562147|ref|ZP_07314489.1| regulatory protein [Streptomyces griseoflavus Tu4000] gi|302479765|gb|EFL42858.1| regulatory protein [Streptomyces griseoflavus Tu4000] Length = 92 Score = 35.0 bits (79), Expect = 7.9, Method: Compositional matrix adjust. Identities = 19/45 (42%), Positives = 27/45 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LT R+ + LA G ++ +IAE+L LSV TV +L A +L A Sbjct: 41 LTSRQRQIVTLAAQGLSNRQIAERLTLSVRTVGNHLYGAYTRLGA 85 >gi|255008092|ref|ZP_05280218.1| putative transcriptional regulatory protein [Bacteroides fragilis 3_1_12] gi|313145809|ref|ZP_07808002.1| transcriptional regulator [Bacteroides fragilis 3_1_12] gi|313134576|gb|EFR51936.1| transcriptional regulator [Bacteroides fragilis 3_1_12] Length = 225 Score = 35.0 bits (79), Expect = 7.9, Method: Compositional matrix adjust. Identities = 23/63 (36%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT E L+ G T++EIA + LS HT+N++ + KL N +AI A+R Sbjct: 156 RLLTPTEKIILKEIALGKTTKEIAAEKNLSFHTINSHRKNIFRKLGVNNVHEAIKYAMRA 215 Query: 232 GYI 234 G + Sbjct: 216 GIV 218 >gi|238028111|ref|YP_002912342.1| putative DNA-binding response regulator [Burkholderia glumae BGR1] gi|237877305|gb|ACR29638.1| Putative DNA-binding response regulator [Burkholderia glumae BGR1] Length = 276 Score = 35.0 bits (79), Expect = 7.9, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R + L+ R+ ++ G T++ IA LG+S TV +L S +L A NR A+ Sbjct: 149 RRQPSIGTLSPRQAQIMRFVHMGNTNKMIARTLGISEGTVKIHLASIFQQLGATNRAAAV 208 Query: 226 A 226 A Sbjct: 209 A 209 >gi|237728737|ref|ZP_04559218.1| transcriptional regulator MalT [Citrobacter sp. 30_2] gi|226909359|gb|EEH95277.1| transcriptional regulator MalT [Citrobacter sp. 30_2] Length = 901 Score = 35.0 bits (79), Expect = 7.9, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQKLLK 895 Query: 228 AIRFG 232 + +G Sbjct: 896 MMGYG 900 >gi|225352424|ref|ZP_03743447.1| hypothetical protein BIFPSEUDO_04044 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156931|gb|EEG70300.1| hypothetical protein BIFPSEUDO_04044 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 218 Score = 35.0 bits (79), Expect = 7.9, Method: Compositional matrix adjust. Identities = 20/57 (35%), Positives = 30/57 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE + L +G +IAE LG+S T+ ++ S KL+ QA+A +R Sbjct: 158 LTVREEQIISLCAEGMLDRDIAEHLGISEATIRKHMQSILRKLNCKTSRQAVALWVR 214 >gi|134100645|ref|YP_001106306.1| hypothetical protein SACE_4111 [Saccharopolyspora erythraea NRRL 2338] gi|291006720|ref|ZP_06564693.1| hypothetical protein SeryN2_19538 [Saccharopolyspora erythraea NRRL 2338] gi|133913268|emb|CAM03381.1| hypothetical protein SACE_4111 [Saccharopolyspora erythraea NRRL 2338] Length = 271 Score = 35.0 bits (79), Expect = 7.9, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 24/44 (54%) Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+L G GYT E A KL LSV T ++ +L A +R QA Sbjct: 199 VLRLMGAGYTDETAARKLNLSVRTYRRHIAHLMARLRAKSRFQA 242 >gi|90579553|ref|ZP_01235362.1| putative response regulator/repressor [Vibrio angustum S14] gi|90439127|gb|EAS64309.1| putative response regulator/repressor [Vibrio angustum S14] Length = 202 Score = 35.0 bits (79), Expect = 7.9, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 2/85 (2%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSEEIAEKL 198 L V + G CY + L + A LT+RE +L G + +A KL Sbjct: 108 LVQAVRTASQGGCYLTPDIAINLVSPNCNKQALGKLTKREHQISELLATGLDVKAVAVKL 167 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQ 223 GLS TV+ + +A KLD N ++ Sbjct: 168 GLSHKTVHVHRANAMDKLDVKNNVE 192 >gi|86740955|ref|YP_481355.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86567817|gb|ABD11626.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 224 Score = 35.0 bits (79), Expect = 7.9, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 31/59 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L ERE L L +G T+ +IA ++ LS TV Y+ + KL+ +R QA A R Sbjct: 164 TLGERERQILVLIAEGLTNRQIAGRIHLSEKTVKNYVSAILEKLELSSRTQAAVYATRI 222 >gi|26541504|gb|AAN85491.1|AF484556_13 putative transcriptional regulator [Streptomyces atroolivaceus] Length = 774 Score = 35.0 bits (79), Expect = 7.9, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 29/61 (47%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A L+ RE+ L G T+++IA L LS TV YLG KL +R + A Sbjct: 704 ALEGLSRRESEVALLVSGGRTNQQIARVLELSHKTVETYLGRIFQKLQVQSRAEVAAMVG 763 Query: 230 R 230 R Sbjct: 764 R 764 >gi|330444975|ref|ZP_08308629.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328493093|dbj|GAA03126.1| response regulator [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 211 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT ++ L + DG +++IA L +S T+ A++ + KLD NR QA+ Sbjct: 150 LTPQQYKVLGMLSDGQLNKQIAYDLNVSEATIKAHMTAIFRKLDVKNRTQAV 201 >gi|312959788|ref|ZP_07774304.1| two-component system, NarL family [Pseudomonas fluorescens WH6] gi|311285954|gb|EFQ64519.1| two-component system, NarL family [Pseudomonas fluorescens WH6] Length = 205 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 7/70 (10%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LELFK + +RE LQL G T++EIA+ + LS TV+ Y KL A + Sbjct: 139 LELFKA-------VNDRELMVLQLFAQGRTNKEIAKGMFLSNKTVSTYKKRLMQKLQAKS 191 Query: 221 RIQAIAKAIR 230 ++ I A R Sbjct: 192 LVELIEMAKR 201 >gi|303250685|ref|ZP_07336882.1| ATP-dependent transcriptional regulator [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252865|ref|ZP_07534754.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650673|gb|EFL80832.1| ATP-dependent transcriptional regulator [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859654|gb|EFM91678.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 905 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L L GY++E+I+++L +++ T+ ++ + K+ NR +AI Sbjct: 841 LTAREWQVLGLIYSGYSNEQISQELVVAITTIKTHIRNLYQKIGVANRSEAI 892 >gi|262403969|ref|ZP_06080524.1| transcriptional regulator LuxR family [Vibrio sp. RC586] gi|262349001|gb|EEY98139.1| transcriptional regulator LuxR family [Vibrio sp. RC586] Length = 222 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 33/64 (51%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + LT ++ LQ G +++IA L +S TV +++ + KL NRIQA+ A Sbjct: 153 ALQTLTRKQLQVLQSMSKGAANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQAVVGAT 212 Query: 230 RFGY 233 + Sbjct: 213 HIDF 216 >gi|239502065|ref|ZP_04661375.1| response regulator [Acinetobacter baumannii AB900] Length = 211 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 38/72 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + S +L+ERE + + +++EIA+KL +SV TVN Y KL + + Sbjct: 138 LSDTQQSPFDSLSEREMQVAMMIVNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDV 197 Query: 223 QAIAKAIRFGYI 234 + AIR+G I Sbjct: 198 KLTHLAIRYGLI 209 >gi|256420538|ref|YP_003121191.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256035446|gb|ACU58990.1| transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 198 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 4/78 (5%) Query: 157 ITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + L F ++++ +++ L+ RE L +G T ++IAE +SV TV +++ + Sbjct: 115 VQKVLAFFNRKNAGSQDHRYGLSPRELEVLDCLVNGDTYKKIAEHCHISVGTVRSHIMNI 174 Query: 213 TVKLDAVNRIQAIAKAIR 230 KLD +R AI KA++ Sbjct: 175 YRKLDVNSRSGAIVKAMQ 192 >gi|297202407|ref|ZP_06919804.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197710072|gb|EDY54106.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 213 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G+G ++ +IAE+L ++ TV ++ KL+ +R+QA A G Sbjct: 153 TLTRREREVLSCLGEGLSNADIAERLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELG 212 Query: 233 Y 233 Sbjct: 213 V 213 >gi|149188017|ref|ZP_01866312.1| two component response regulator UhpA [Vibrio shilonii AK1] gi|148838005|gb|EDL54947.1| two component response regulator UhpA [Vibrio shilonii AK1] Length = 203 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 3/84 (3%) Query: 149 AHGACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 A+G CY ++L R A LT+RE +L G + +A +LGLS TV+ Sbjct: 116 ANGGCYLTPDIAMKLASPRPFQQALSRLTKREYEVSELLATGLDVKAVAAELGLSHKTVH 175 Query: 207 AYLGSATVKLDAVNRIQAIAKAIR 230 + +A KL N ++ +AK R Sbjct: 176 VHRANALDKLAVKNNVE-LAKLFR 198 >gi|153801365|ref|ZP_01955951.1| malT regulatory protein [Vibrio cholerae MZO-3] gi|124123116|gb|EAY41859.1| malT regulatory protein [Vibrio cholerae MZO-3] Length = 921 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 858 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 912 >gi|15598673|ref|NP_252167.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1] gi|116051496|ref|YP_789670.1| transcriptional regulator RhlR [Pseudomonas aeruginosa UCBPP-PA14] gi|218890275|ref|YP_002439139.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58] gi|1710203|sp|P54292|RHLR_PSEAE RecName: Full=Regulatory protein rhlR; AltName: Full=Elastase modulator gi|9949621|gb|AAG06865.1|AE004768_10 transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1] gi|151538|gb|AAA25983.1| rhlR [Pseudomonas aeruginosa] gi|452505|gb|AAA62130.1| regulatory protein [Pseudomonas aeruginosa] gi|1117918|gb|AAC44036.1| RhlR [Pseudomonas aeruginosa PAO1] gi|115586717|gb|ABJ12732.1| acylhomoserine lactone dependent transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|161724881|emb|CAO85753.1| RhlR protein [Pseudomonas aeruginosa] gi|211908969|gb|ACJ12779.1| rhamnosyl transferase I [actinobacterium MSA10] gi|211908971|gb|ACJ12780.1| rhamnosyl transferase I [actinobacterium MSA19] gi|218770498|emb|CAW26263.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58] gi|281331824|emb|CBI71035.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331826|emb|CBI71036.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331828|emb|CBI71037.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331830|emb|CBI71038.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331832|emb|CBI71039.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331834|emb|CBI71040.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331836|emb|CBI71041.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331838|emb|CBI71042.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331840|emb|CBI71043.1| transcriptional regulator [Pseudomonas aeruginosa] gi|299772610|gb|ADJ38517.1| transcriptional regulator RhlR [Pseudomonas sp. BSFD5] Length = 241 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQ DG +S EIA L +S TVN + + K DA N+ A A A G Sbjct: 181 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKTLAAAYAAALGL 240 Query: 234 I 234 I Sbjct: 241 I 241 >gi|150390890|ref|YP_001320939.1| two component LuxR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950752|gb|ABR49280.1| two component transcriptional regulator, LuxR family [Alkaliphilus metalliredigens QYMF] Length = 217 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 9/105 (8%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR--NLTERET 179 NGYV+ +E L + A G Y Q++ +F R LT+RE Sbjct: 101 NGYVLKDAESDSLIKAIRDVAMGESYIHPSLASQLVKEFNRRDDHHDKEPREGKLTKREY 160 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L L +G ++EIA L +S TV ++ + K+ +R QA Sbjct: 161 EVLTLIAEGQNNKEIASNLFISEKTVKNHVSNIFKKIHVNDRTQA 205 >gi|299068412|emb|CBJ39636.1| putative response regulator, LuxR family [Ralstonia solanacearum CMR15] Length = 210 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LT RE L G++++ IA++LGLSV TV ++ S KL I+ A+ ++ Sbjct: 146 AEALTPRERDILDGVAQGWSNKRIADELGLSVRTVESHRLSLKRKLG----IEGQAELVK 201 Query: 231 FG 232 F Sbjct: 202 FA 203 >gi|297564146|ref|YP_003683119.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848595|gb|ADH70613.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 223 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 28/49 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+ GY +E+A++L +SV TV ++ S KL NR Sbjct: 162 RLTQREREVLRHIARGYAYKEVAKELFISVKTVETHVSSVLRKLQLSNR 210 >gi|256826504|ref|YP_003150463.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582647|gb|ACU93781.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 606 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Query: 159 DFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 D+ +L KR SA + L++RE L GYT IAE L +S +TV + K Sbjct: 531 DWKDLLSKRVSALQQVYRLSDREAEVTDLIVHGYTVPRIAETLFVSENTVRTHTKRIYTK 590 Query: 216 LD 217 LD Sbjct: 591 LD 592 >gi|256424175|ref|YP_003124828.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256039083|gb|ACU62627.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 234 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 21/170 (12%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFH------FNSGLLPIIWQSIQEETVI----ESSGQ 103 L NY L+ +I N+LI+T LFH + LL + ++ V+ + Sbjct: 21 LKNYLLEQDNI-NVLIQTSDISELFHKLKDFPVDVLLLDVFMSNLNALDVLAFIRREYPE 79 Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFL 161 + V + G I+ + G H GY+ T E L +++ ++ C +++T+ L Sbjct: 80 IKVLIVSGCTELHLISELLDYGIH--GYISKTDEPEELLQAILMASNNKLYCNKLLTEAL 137 Query: 162 ------ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 +L + ++ L +RE LQ+ D + EIAE+L LS+ ++ Sbjct: 138 YWNRQNKLGEHLQTSTVELNDREKKILQMLWDEKNNREIAEELFLSIRSI 187 >gi|229008966|ref|ZP_04166312.1| Response regulator receiver [Bacillus mycoides Rock1-4] gi|228752300|gb|EEM01982.1| Response regulator receiver [Bacillus mycoides Rock1-4] Length = 215 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 33/64 (51%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K SS LT+RE LQL G ++EIA L +S V ++ + KL+ +R QA+ Sbjct: 146 KASSFIEPLTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQAV 205 Query: 226 AKAI 229 I Sbjct: 206 VLGI 209 >gi|227543314|ref|ZP_03973363.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227180927|gb|EEI61899.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 212 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G +++EI L LS TV ++L KLDA +R A+A A G Sbjct: 151 TLTPRELEVLRLVAAGSSNKEIGRVLFLSEATVKSHLVHIYDKLDARSRTAAVAAAREQG 210 Query: 233 YI 234 + Sbjct: 211 VL 212 >gi|208401188|gb|ACI26687.1| RhlR transcriptional regulator [Pseudomonas aeruginosa] gi|209171245|gb|ACI42868.1| RhlR [Pseudomonas aeruginosa] Length = 241 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQ DG +S EIA L +S TVN + + K DA N+ A A G Sbjct: 181 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKTLAATYAAALGL 240 Query: 234 I 234 I Sbjct: 241 I 241 >gi|111021179|ref|YP_704151.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110820709|gb|ABG95993.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 223 Score = 35.0 bits (79), Expect = 8.0, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L GY + I+ +L LS TV ++ + KL +R AI +A Sbjct: 160 LTDREREVLDLVARGYDNASISRRLVLSPKTVRNHVSNVLAKLGVPDRPAAIVRA 214 >gi|111021259|ref|YP_704231.1| transcriptional regulator [Rhodococcus jostii RHA1] gi|110820789|gb|ABG96073.1| transcriptional regulator [Rhodococcus jostii RHA1] Length = 881 Score = 35.0 bits (79), Expect = 8.0, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + S+A+ LT RE L T+E+IA L +SV+TV +L KL +R A Sbjct: 812 RSESAASDMLTPRELELLVELPSWRTAEQIAADLCVSVNTVKTHLRGIYRKLGVTSRRDA 871 Query: 225 IAKA 228 IA A Sbjct: 872 IAAA 875 >gi|307257285|ref|ZP_07539055.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306864135|gb|EFM96048.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 905 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L L GY++E+I+++L +++ T+ ++ + K+ NR +AI Sbjct: 841 LTAREWQVLGLIYSGYSNEQISQELVVAITTIKTHIRNLYQKIGVANRSEAI 892 >gi|296271454|ref|YP_003654086.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094241|gb|ADG90193.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 213 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 5/66 (7%) Query: 163 LFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L + R AA+ L+++E L+L G+G T+ +I E+L L+ TV Y+ + KL+ Sbjct: 134 LRRLREQAAKKDPLAALSDQERQILELIGEGLTNRQIGERLFLAEKTVKNYVSTLLSKLN 193 Query: 218 AVNRIQ 223 R Q Sbjct: 194 MQRRTQ 199 >gi|300024660|ref|YP_003757271.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526481|gb|ADJ24950.1| two component transcriptional regulator, LuxR family [Hyphomicrobium denitrificans ATCC 51888] Length = 207 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 3/97 (3%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G+V T E +L V+ A G ++ ++++ LT RE L +G+ Sbjct: 103 GFVSKTEEPQVLLEAVVSVARG---RLSLPYVDIDLLNHDPLEGLTARERELLAALANGW 159 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 T+ +IA + G+S +TV +L + KL NR A+A Sbjct: 160 TNLQIAARTGISRNTVKYHLKNLYDKLGVSNRAMAVA 196 >gi|256832883|ref|YP_003161610.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] gi|256686414|gb|ACV09307.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] Length = 207 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%) Query: 152 ACYQVITDFLELFKKRS---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +V+ D + ++R +LT E ++L G+G ++ EIAE+L ++ TV + Sbjct: 115 AAGRVLLDERTVTRRRKEHDDPTEDLTPSELRVVELIGEGLSNREIAERLSIAEKTVKNH 174 Query: 209 LGSATVKLDAVNRIQAIA 226 + S K+ R Q A Sbjct: 175 ITSLLAKMGWQRRTQVAA 192 >gi|226363605|ref|YP_002781387.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226242094|dbj|BAH52442.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 897 Score = 35.0 bits (79), Expect = 8.1, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 33/64 (51%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + S+A+ LT RE L T+E+IA L +SV+TV +L KL +R A Sbjct: 828 RSESAASDMLTPRELELLVELPSWRTAEQIAADLCVSVNTVKTHLRGIYRKLGVTSRRDA 887 Query: 225 IAKA 228 IA A Sbjct: 888 IAAA 891 >gi|226363539|ref|YP_002781321.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226242028|dbj|BAH52376.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 224 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L GY + I+ +L LS TV ++ + KL +R AI +A Sbjct: 161 LTDREREVLDLVARGYDNASISRRLVLSPKTVRNHVSNVLAKLGVPDRPAAIVRA 215 >gi|207739718|ref|YP_002258111.1| hypothetical protein RSIPO_04422 [Ralstonia solanacearum IPO1609] gi|206593100|emb|CAQ60006.1| hypothetical protein RSIPO_04422 [Ralstonia solanacearum IPO1609] Length = 233 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L++RE L++ G G T EIAE L +S TV+ Y G K+ N Sbjct: 172 LSDREFQTLRMLGSGRTLGEIAEALQISAKTVSVYRGRVLSKMKLRN 218 >gi|207728364|ref|YP_002256758.1| hypothetical protein RSMK04755 [Ralstonia solanacearum MolK2] gi|206591610|emb|CAQ57222.1| hypothetical protein RSMK04755 [Ralstonia solanacearum MolK2] Length = 233 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 26/47 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L++RE L++ G G T EIAE L +S TV+ Y G K+ N Sbjct: 172 LSDREFQTLRMLGSGRTLGEIAEALQISAKTVSVYRGRVLSKMKLRN 218 >gi|11344597|gb|AAG34369.1|AF197465_1 nitrate/nitrite response regulator [Pseudomonas fluorescens] Length = 215 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LTERE L+ GY+++ I KLG++ TV ++ + KL +R++A A+ Sbjct: 153 LTERERQVLKTIAGGYSNKVIGHKLGITEGTVKVHVKNLLHKLGLRSRVEAAVWAM 208 >gi|107103010|ref|ZP_01366928.1| hypothetical protein PaerPA_01004079 [Pseudomonas aeruginosa PACS2] gi|152989609|ref|YP_001347033.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7] gi|150964767|gb|ABR86792.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7] Length = 224 Score = 35.0 bits (79), Expect = 8.1, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQ DG +S EIA L +S TVN + + K DA N+ A A A G Sbjct: 164 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKTLAAAYAAALGL 223 Query: 234 I 234 I Sbjct: 224 I 224 >gi|311109177|ref|YP_003982030.1| response regulator 18 [Achromobacter xylosoxidans A8] gi|310763866|gb|ADP19315.1| response regulator 18 [Achromobacter xylosoxidans A8] Length = 236 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 34/62 (54%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE+ L+L +G + EIAE+L LS +TV ++ KL +R +AI A G Sbjct: 174 TLSPRESQILRLVSEGLGNREIAEELHLSRYTVECHVKHIYRKLAVSSRTRAIHAARTRG 233 Query: 233 YI 234 + Sbjct: 234 LL 235 >gi|300715701|ref|YP_003740504.1| Quorum-sensing transcriptional regulator [Erwinia billingiae Eb661] gi|299061537|emb|CAX58651.1| Quorum-sensing transcriptional regulator [Erwinia billingiae Eb661] Length = 247 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 29/61 (47%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE + A G + +EIA LG+ + TV ++G+A KL N AI I Sbjct: 179 FTSRENEIIYWASVGKSYQEIALILGIKLTTVKYHIGNAVKKLGVTNAKHAIRLGIELNL 238 Query: 234 I 234 I Sbjct: 239 I 239 >gi|260769447|ref|ZP_05878380.1| two component transcriptional regulator LuxR family [Vibrio furnissii CIP 102972] gi|260614785|gb|EEX39971.1| two component transcriptional regulator LuxR family [Vibrio furnissii CIP 102972] Length = 159 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 37/69 (53%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + S + L++RE LQ G T++EIA+K+ LS T++ Y KL + + ++ I Sbjct: 91 QESEMLKLLSDREMMVLQQLSQGLTNKEIADKMILSNKTISTYKTRLMEKLGSSSLLELI 150 Query: 226 AKAIRFGYI 234 A R G + Sbjct: 151 EFAKRNGVV 159 >gi|165976652|ref|YP_001652245.1| ATP-dependent transcriptional regulator [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190150552|ref|YP_001969077.1| MalT family transcriptional regulator [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307250482|ref|ZP_07532428.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307261709|ref|ZP_07543375.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263897|ref|ZP_07545501.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876753|gb|ABY69801.1| ATP-dependent transcriptional regulator [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915683|gb|ACE61935.1| HTH-type transcriptional regulator MalT [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306857504|gb|EFM89614.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306868527|gb|EFN00338.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870762|gb|EFN02502.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 905 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L L GY++E+I+++L +++ T+ ++ + K+ NR +AI Sbjct: 841 LTAREWQVLGLIYSGYSNEQISQELVVAITTIKTHIRNLYQKIGVANRSEAI 892 >gi|254242162|ref|ZP_04935484.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192] gi|126195540|gb|EAZ59603.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192] Length = 242 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQ DG +S EIA L +S TVN + + K DA N+ A A A G Sbjct: 181 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKTLAAAYAAALGL 240 Query: 234 I 234 I Sbjct: 241 I 241 >gi|46360105|gb|AAS88874.1| putative serine-threonine protein kinase [Rhodococcus sp. T104] Length = 1092 Score = 35.0 bits (79), Expect = 8.2, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 T+RE +L +G T+ EIA +L +SV T ++ KL +R Q A Sbjct: 1031 TKREREVAELVAEGLTNREIASRLTISVRTAQGHIEHLLAKLGFTSRAQIAA 1082 >gi|71068215|gb|AAZ23070.1| possible response regulator [Streptomyces fradiae] Length = 241 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G G ++ E+A +L LS TV ++ KL +R QA+ A G Sbjct: 166 LTPREREVLTLMGRGLSNAELARELTLSEATVKTHVSRIFAKLALRDRAQAVVLAYETGL 225 Query: 234 IC 235 + Sbjct: 226 VS 227 >gi|119714214|ref|YP_919356.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119526123|gb|ABL79493.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 567 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 33/56 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L L +G ++ EIAE+L +SV T ++G+ KL +R +A A A+ Sbjct: 497 LSRREQEVLGLVVEGLSNAEIAERLFISVKTAGHHVGNILTKLGVRSRTEATAYAL 552 >gi|307246149|ref|ZP_07528231.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307255131|ref|ZP_07536949.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307259568|ref|ZP_07541293.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853084|gb|EFM85307.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862004|gb|EFM93980.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306866504|gb|EFM98367.1| HTH-type transcriptional regulator malT [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 905 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L L GY++E+I+++L +++ T+ ++ + K+ NR +AI Sbjct: 841 LTAREWQVLGLIYSGYSNEQISQELVVAITTIKTHIRNLYQKIGVANRSEAI 892 >gi|283787944|ref|YP_003367809.1| regulatory protein [Citrobacter rodentium ICC168] gi|282951398|emb|CBG91097.1| regulatory protein [Citrobacter rodentium ICC168] Length = 901 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 Query: 228 AIRFG 232 + +G Sbjct: 896 MMGYG 900 >gi|258651492|ref|YP_003200648.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554717|gb|ACV77659.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 219 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 10/105 (9%) Query: 129 NGYVIFTSEFLMLANEVI-IEAHGACY--QVITDFLELFKKRSSAARN-------LTERE 178 GYV T LA+ ++ + A A + ++ L+ F R S A L+ RE Sbjct: 104 RGYVTKTISGRELADAIVRVSAGDAVFSPRLAGFVLDAFSDRGSPAPITDPELDLLSPRE 163 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+L GY +EIA +L +S+ TV ++ S K NR + Sbjct: 164 REVLKLLARGYAYKEIAAQLFISIKTVETHVSSVLRKTQKSNRYE 208 >gi|227489040|ref|ZP_03919356.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227090985|gb|EEI26297.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 212 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G +++EI L LS TV ++L KLDA +R A+A A G Sbjct: 151 TLTPRELEVLRLVAAGSSNKEIGRVLFLSEATVKSHLVHIYDKLDARSRTAAVAAAREQG 210 Query: 233 YI 234 + Sbjct: 211 VL 212 >gi|209527179|ref|ZP_03275692.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209492428|gb|EDZ92770.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 208 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L +G ++ EIAE L LS +T+ ++ KL +R+ A+R G Sbjct: 147 TLSPRELEVLKLMVEGKSNPEIAEALYLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSG 206 Query: 233 YI 234 + Sbjct: 207 LV 208 >gi|161724874|emb|CAO85748.1| PmrR protein [Pseudomonas sp. RW10S2] Length = 236 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 26/43 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L+ERE L+ A DG T E+A+ L LS+ TV + +A KL Sbjct: 175 LSEREREVLRWAADGKTLNEVADILTLSIETVKFHTRNAGAKL 217 >gi|82779201|ref|YP_405550.1| DNA-binding transcriptional activator UhpA [Shigella dysenteriae Sd197] gi|309784293|ref|ZP_07678932.1| transcriptional regulatory protein uhpA [Shigella dysenteriae 1617] gi|81243349|gb|ABB64059.1| response regulator, positive activator of uhpT transcription [Shigella dysenteriae Sd197] gi|308927800|gb|EFP73268.1| transcriptional regulatory protein uhpA [Shigella dysenteriae 1617] Length = 196 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%) Query: 143 NEVIIEAH----GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +E+I+ H G CY ++L R LT+RE + G +EIA +L Sbjct: 106 DELIVAVHTVATGGCYLTPDIAIKLASGRQDP---LTKRERQVAEKLAQGMAVKEIAAEL 162 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQ 223 GLS TV+ + + KL N ++ Sbjct: 163 GLSPKTVHVHRANLMEKLGVSNDVE 187 >gi|83594559|ref|YP_428311.1| two component LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577473|gb|ABC24024.1| two component transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 224 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 31/60 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ L+L G G +++EIA L LS TV ++ + L NR A+ A R G Sbjct: 162 RLTPRQGEVLRLLGQGKSNKEIARVLDLSEGTVKLHVTAILKALGVNNRTGAVIAAQRLG 221 >gi|87124831|ref|ZP_01080679.1| Two-component response regulator, CheY-like receiver and wHTH DNA-binding domains [Synechococcus sp. RS9917] gi|86167710|gb|EAQ68969.1| Two-component response regulator, CheY-like receiver and wHTH DNA-binding domains [Synechococcus sp. RS9917] Length = 207 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Query: 159 DFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + EL + ++ A LT RE L G G ++++IA+++ LSVHTV + Sbjct: 129 EIAELLRAKAPAPLAKLTRREREVLSGIGAGLSNQQIADRMHLSVHTVETH 179 >gi|304321389|ref|YP_003855032.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503] gi|303300291|gb|ADM09890.1| DNA-binding response regulator [Parvularcula bermudensis HTCC2503] Length = 213 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%) Query: 168 SSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 S+AARNL T + L G +++IA ++G+S TV A++ + KL A NR QA Sbjct: 144 SAAARNLAQLTPAQRRVLNGLAAGLLNKQIAYEMGISDATVKAHMTAIMRKLGATNRTQA 203 Query: 225 I 225 + Sbjct: 204 L 204 >gi|226946140|ref|YP_002801213.1| Two-component response regulator, LuxR family [Azotobacter vinelandii DJ] gi|226721067|gb|ACO80238.1| Two-component response regulator, LuxR family [Azotobacter vinelandii DJ] Length = 208 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 29/51 (56%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 RSS +NLT RE L++ G S+ +A +L +SV TV + S KL+ Sbjct: 141 RSSDPQNLTPREHQILRMLAQGLDSKAMARELDISVRTVETHRLSIRRKLN 191 >gi|262280669|ref|ZP_06058452.1| response regulator [Acinetobacter calcoaceticus RUH2202] gi|299771874|ref|YP_003733900.1| response regulator [Acinetobacter sp. DR1] gi|262257569|gb|EEY76304.1| response regulator [Acinetobacter calcoaceticus RUH2202] gi|298701962|gb|ADI92527.1| response regulator [Acinetobacter sp. DR1] Length = 211 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + + +++EIA+KL +SV TVN Y KL + ++ AIR+G Sbjct: 149 LSEREMQVAMMVVNCISAQEIADKLFVSVKTVNTYRYRIFEKLAIDSDVKLTHLAIRYGL 208 Query: 234 I 234 I Sbjct: 209 I 209 >gi|239944489|ref|ZP_04696426.1| LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239990948|ref|ZP_04711612.1| LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 1049 Score = 35.0 bits (79), Expect = 8.3, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 34/62 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A+ LT RE +L G+T+ +IAE+L +S T + ++ + KL +R +A A A Sbjct: 982 ASFGLTPREQDVHRLVAAGHTNRKIAEELFISPKTASVHVSNILAKLGVSSRGEAAALAH 1041 Query: 230 RF 231 R Sbjct: 1042 RL 1043 >gi|229000917|ref|ZP_04160386.1| Response regulator receiver [Bacillus mycoides Rock3-17] gi|228758834|gb|EEM07909.1| Response regulator receiver [Bacillus mycoides Rock3-17] Length = 224 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 33/64 (51%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K SS LT+RE LQL G ++EIA L +S V ++ + KL+ +R QA+ Sbjct: 155 KASSFIEPLTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQAV 214 Query: 226 AKAI 229 I Sbjct: 215 VLGI 218 >gi|213029446|ref|ZP_03343893.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 362 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 297 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 356 Query: 228 AIRFG 232 + +G Sbjct: 357 MMGYG 361 >gi|190574521|ref|YP_001972366.1| putative two component system response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190012443|emb|CAQ46071.1| putative two component system response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] Length = 224 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 2/58 (3%) Query: 170 AAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 AAR +L+ + L L +G +++IA++LG+ + TV A++ +L NR QAI Sbjct: 146 AARLASLSAHQYKVLGLVAEGLLNKQIADRLGVQLRTVKAHMTRIMERLGVRNRAQAI 203 >gi|29830997|ref|NP_825631.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608111|dbj|BAC72166.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 216 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G ++ EIA + +S HTV ++G+ KL +R+QA+ A G Sbjct: 154 LTARERETLLHLAHGLSNAEIAAAMVVSEHTVKTHVGNVLSKLALRDRVQAVICAYETGL 213 Query: 234 I 234 + Sbjct: 214 V 214 >gi|29144259|ref|NP_807601.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|29139896|gb|AAO71461.1| MalT regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 901 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 Query: 228 AIRFG 232 + +G Sbjct: 896 MMGYG 900 >gi|115526593|ref|YP_783504.1| two component LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115520540|gb|ABJ08524.1| two component transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 309 Score = 35.0 bits (79), Expect = 8.3, Method: Compositional matrix adjust. Identities = 20/48 (41%), Positives = 26/48 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE+ L G T+ +IA+ LGLS TV+ +L KL NR Sbjct: 247 LTTRESEVLSWLSKGKTNRDIAQILGLSPRTVDKHLEQIYAKLGVENR 294 >gi|258624034|ref|ZP_05718986.1| malT regulatory protein, positive regulatory protein [Vibrio mimicus VM603] gi|258583644|gb|EEW08441.1| malT regulatory protein, positive regulatory protein [Vibrio mimicus VM603] Length = 935 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 872 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVHTA 926 >gi|302526068|ref|ZP_07278410.1| two component system DNA binding response regulator [Streptomyces sp. AA4] gi|302434963|gb|EFL06779.1| two component system DNA binding response regulator [Streptomyces sp. AA4] Length = 205 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 36/72 (50%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + + A L+ RE L L DG ++ EI+++L LS TV ++L KL +R Sbjct: 132 LMNRMRTPAAALSPREIEVLGLVADGLSNLEISKRLFLSQATVKSHLVHIYAKLGVDSRT 191 Query: 223 QAIAKAIRFGYI 234 A+A G I Sbjct: 192 AAVAAGKARGLI 203 >gi|226226404|ref|YP_002760510.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226089595|dbj|BAH38040.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 209 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 36/65 (55%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A+ LT R+ L+ +G ++ EIA L +S TV A++ + KL A +R QA+ I Sbjct: 142 ASDALTARQLEVLRSLAEGRSNIEIANTLYISEGTVKAHIKAILQKLGARDRTQAVTIGI 201 Query: 230 RFGYI 234 + G I Sbjct: 202 KRGLI 206 >gi|126208699|ref|YP_001053924.1| HTH-type transcriptional regulator MalT [Actinobacillus pleuropneumoniae L20] gi|126097491|gb|ABN74319.1| HTH-type transcriptional regulator MalT [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 905 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L L GY++E+I+++L +++ T+ ++ + K+ NR +AI Sbjct: 841 LTAREWQVLGLIYSGYSNEQISQELVVAITTIKTHIRNLYQKIGVANRSEAI 892 >gi|16762772|ref|NP_458389.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|213163523|ref|ZP_03349233.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426874|ref|ZP_03359624.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|46577093|sp|Q8Z227|MALT_SALTI RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|25301094|pir||AG0996 MalT regulatory protein STY4281 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505078|emb|CAD08099.1| MalT regulatory protein [Salmonella enterica subsp. enterica serovar Typhi] Length = 901 Score = 35.0 bits (79), Expect = 8.4, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 Query: 228 AIRFG 232 + +G Sbjct: 896 MMGYG 900 >gi|330810002|ref|YP_004354464.1| two-component response regulator NarL [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378110|gb|AEA69460.1| Putative two-component response regulator NarL [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 215 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 19/56 (33%), Positives = 32/56 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LTERE L+ GY+++ I KLG++ TV ++ + KL +R++A A+ Sbjct: 153 LTERERQVLKTIAGGYSNKVIGHKLGITEGTVKVHVKNLLHKLGLRSRVEAAVWAM 208 >gi|317404098|gb|EFV84550.1| DNA-binding response regulator [Achromobacter xylosoxidans C54] Length = 218 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 17/45 (37%), Positives = 27/45 (60%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + S+ A LT+RE L+ G+ +++IA+ LGLSV TV + Sbjct: 148 LSQASAPATLLTQRERDVLRHIASGHANKQIAQALGLSVRTVETH 192 >gi|303252942|ref|ZP_07339098.1| ATP-dependent transcriptional regulator [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648200|gb|EFL78400.1| ATP-dependent transcriptional regulator [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 905 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L L GY++E+I+++L +++ T+ ++ + K+ NR +AI Sbjct: 841 LTAREWQVLGLIYSGYSNEQISQELVVAITTIKTHIRNLYQKIGVANRSEAI 892 >gi|262164607|ref|ZP_06032345.1| transcriptional activator of maltose regulon MalT [Vibrio mimicus VM223] gi|262026987|gb|EEY45654.1| transcriptional activator of maltose regulon MalT [Vibrio mimicus VM223] Length = 935 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 872 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVHTA 926 >gi|261213145|ref|ZP_05927429.1| transcriptional activator of maltose regulon MalT [Vibrio sp. RC341] gi|260838210|gb|EEX64887.1| transcriptional activator of maltose regulon MalT [Vibrio sp. RC341] Length = 902 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVQTA 893 >gi|213647822|ref|ZP_03377875.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 901 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 Query: 228 AIRFG 232 + +G Sbjct: 896 MMGYG 900 >gi|197263806|ref|ZP_03163880.1| HTH-type transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197242061|gb|EDY24681.1| HTH-type transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 890 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 825 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 884 Query: 228 AIRFG 232 + +G Sbjct: 885 MMGYG 889 >gi|153852992|ref|ZP_01994429.1| hypothetical protein DORLON_00414 [Dorea longicatena DSM 13814] gi|149754634|gb|EDM64565.1| hypothetical protein DORLON_00414 [Dorea longicatena DSM 13814] Length = 223 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%) Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +++ +KR+ NLT+ E + G G +++EIAE L LS TV YL KL+ Sbjct: 146 VVDVDQKRTE---NLTKTEWKIINEVGRGSSNKEIAENLNLSEGTVRNYLSGILNKLEFR 202 Query: 220 NRIQ 223 +R Q Sbjct: 203 DRTQ 206 >gi|85376480|gb|ABC70477.1| acylhomoserine lactone-dependent transcriptional regulator [Pseudomonas sp. M18] Length = 215 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQ DG +S EIA L +S TVN + + K DA N+ A A A G Sbjct: 155 LSHREREILQWTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKTLAAAYAAALGL 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|120402369|ref|YP_952198.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119955187|gb|ABM12192.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 220 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 34/63 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A R LT+RE+ L L +G ++ IA KL + TV +L S KL +R A A A+ Sbjct: 155 ARRGLTQRESEILALVVNGLSNRAIAAKLIIGDETVKTHLSSIYRKLGVSDRTAAAATAL 214 Query: 230 RFG 232 R G Sbjct: 215 REG 217 >gi|326630007|gb|EGE36350.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 904 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 839 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 898 Query: 228 AIRFG 232 + +G Sbjct: 899 MMGYG 903 >gi|325922351|ref|ZP_08184126.1| Transcriptional regulator, LuxR family protein [Xanthomonas gardneri ATCC 19865] gi|325547170|gb|EGD18249.1| Transcriptional regulator, LuxR family protein [Xanthomonas gardneri ATCC 19865] Length = 506 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 34/60 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L +G +EIA++L ++ +TV ++ + K+D +R +AI A G+ Sbjct: 435 LTGRERDVLGLLAEGLADKEIAQQLSVAPNTVRNHVAALYSKIDVHSRGEAIVWARERGF 494 >gi|311896508|dbj|BAJ28916.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 203 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 32/65 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AA LT RE L+ G ++ EI +L LS TV + KL A +R A+A Sbjct: 138 AAPTLTAREIQVLEGMSHGRSNAEIGRELFLSEDTVKTHARRLFKKLGASDRAHAVALGF 197 Query: 230 RFGYI 234 R+G + Sbjct: 198 RWGLV 202 >gi|226228720|ref|YP_002762826.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226091911|dbj|BAH40356.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 210 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ +IA +LG + T+ ++ + KL +R A+ A+R G Sbjct: 147 LTARELEVLELMAQGLSNPDIAIRLGRAESTMKVHVRNILQKLGTDDRTAAVTTALRRGI 206 Query: 234 I 234 I Sbjct: 207 I 207 >gi|184155547|ref|YP_001843887.1| two-component response regulator [Lactobacillus fermentum IFO 3956] gi|183226891|dbj|BAG27407.1| two-component response regulator [Lactobacillus fermentum IFO 3956] Length = 217 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L++RE L GYT++EIA KL +S TV A+ + KL R + AI Sbjct: 154 SLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLETRADLVRYAIHHH 213 Query: 233 YI 234 I Sbjct: 214 LI 215 >gi|170750849|ref|YP_001757109.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170752017|ref|YP_001758277.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657371|gb|ACB26426.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] gi|170658539|gb|ACB27594.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 486 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 33/66 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +AA NLT RE L L G + + IA KLGLS +TV + + K+ R +A+ Sbjct: 414 DAAAPNLTVRERQILNLICSGLSDDAIARKLGLSRNTVRNHGAALYRKIGIHKRSEAVVW 473 Query: 228 AIRFGY 233 G+ Sbjct: 474 GRENGF 479 >gi|152994713|ref|YP_001339548.1| two component LuxR family transcriptional regulator [Marinomonas sp. MWYL1] gi|150835637|gb|ABR69613.1| two component transcriptional regulator, LuxR family [Marinomonas sp. MWYL1] Length = 213 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 2/91 (2%) Query: 129 NGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 NGYV+ +SE L+ A + + +D L + +LT+RE + L+ Sbjct: 105 NGYVLKDVSSEELVQAINTVCQGGTYFSSGASDSLFSLAASPKQSDDLTKREVAVLKALA 164 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 G +++EIA+ L +SV TV + + KLD Sbjct: 165 AGLSNKEIAQLLNISVRTVETHRQNLKNKLD 195 >gi|111223193|ref|YP_713987.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111150725|emb|CAJ62426.1| putative two-component system response regulator [Frankia alni ACN14a] Length = 211 Score = 35.0 bits (79), Expect = 8.5, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 31/58 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L ERE L L +G T+ +IA ++ LS TV Y+ + KL+ +R QA A R Sbjct: 152 LGERERQILVLIAEGLTNRQIAGRIHLSEKTVKNYVSAILEKLELSSRTQAAVYATRI 209 >gi|205354861|ref|YP_002228662.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|226694943|sp|B5R7J9|MALT_SALG2 RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|205274642|emb|CAR39696.1| MalT regulatory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] Length = 901 Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 Query: 228 AIRFG 232 + +G Sbjct: 896 MMGYG 900 >gi|120612865|ref|YP_972543.1| two component LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120591329|gb|ABM34769.1| two component transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] Length = 219 Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 23/35 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 LT RE+ L G G +S++IA LGLSV TV A+ Sbjct: 154 LTPRESEILAALGRGASSKQIACDLGLSVRTVEAH 188 >gi|17549798|ref|NP_523138.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] gi|17432053|emb|CAD18730.1| putative transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 252 Score = 35.0 bits (79), Expect = 8.6, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 35/74 (47%) Query: 150 HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 H A + + + +K S A L+ERE L G G ++ EIA + S +TV YL Sbjct: 159 HSALLRAVANVESDLQKASEALATLSEREREVALLIGQGKSNAEIALLVCKSENTVKHYL 218 Query: 210 GSATVKLDAVNRIQ 223 S K NR++ Sbjct: 219 SSIMDKTGCENRVR 232 >gi|322513675|ref|ZP_08066771.1| maltose regulon activator MalT [Actinobacillus ureae ATCC 25976] gi|322120546|gb|EFX92449.1| maltose regulon activator MalT [Actinobacillus ureae ATCC 25976] Length = 905 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L L GY++E+I+++L +++ T+ ++ + K+ NR +AI Sbjct: 841 LTAREWQVLGLIYSGYSNEQISQELVVAITTIKTHIRNLYQKIGVANRSEAI 892 >gi|320530995|ref|ZP_08032027.1| putative response regulator UvrY [Selenomonas artemidis F0399] gi|320136744|gb|EFW28694.1| putative response regulator UvrY [Selenomonas artemidis F0399] Length = 217 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE GYT E AE+L LS TV+ + KL R +A AIR G Sbjct: 151 RLTEREKEVFDRLIRGYTVTETAEQLHLSGKTVDTHKTHIYEKLGCSRRSDLVALAIRHG 210 Query: 233 YI 234 + Sbjct: 211 LL 212 >gi|297623791|ref|YP_003705225.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164971|gb|ADI14682.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 503 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 2/92 (2%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGL 200 EV+ + QV+ ++ R AA + LTERE L G ++E IA +LGL Sbjct: 408 QEVMSDTAWFSTQVMERLAQIRAGRPKAAPSVALTERERQVLAQLAQGKSNEAIAAELGL 467 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + TV Y+ K+ +R +A+ A G Sbjct: 468 ARQTVRNYISVLYDKIGVHSRAEAVVWARERG 499 >gi|260662950|ref|ZP_05863843.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] gi|260552571|gb|EEX25571.1| two-component system response regulator [Lactobacillus fermentum 28-3-CHN] Length = 217 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L++RE L GYT++EIA KL +S TV A+ + KL R + AI Sbjct: 154 SLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKANIVRKLKLETRADLVRYAIHHH 213 Query: 233 YI 234 I Sbjct: 214 LI 215 >gi|239943663|ref|ZP_04695600.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 183 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 32/65 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AA LT RE L+ G ++ EI +L LS TV + KL A +R A+A Sbjct: 118 AAPTLTAREIQVLEGMSHGRSNAEIGRELFLSEDTVKTHARRLFKKLGASDRAHAVALGF 177 Query: 230 RFGYI 234 R+G + Sbjct: 178 RWGLV 182 >gi|213583602|ref|ZP_03365428.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 85 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 20 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 79 Query: 228 AIRFG 232 + +G Sbjct: 80 MMGYG 84 >gi|167584205|ref|ZP_02376593.1| two component transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 230 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L++RE+ ++L G + + IAE+L TV+A SA KL A N I+ I +A Sbjct: 150 APKLSQRESEVIRLYLSGVSIKAIAERLNKGKQTVSAQKISAMKKLGAKNDIELIRRAAT 209 Query: 231 FG 232 G Sbjct: 210 LG 211 >gi|161505918|ref|YP_001573030.1| transcriptional regulator MalT [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189028761|sp|A9MMA9|MALT_SALAR RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|160867265|gb|ABX23888.1| hypothetical protein SARI_04099 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 901 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 Query: 228 AIRFG 232 + +G Sbjct: 896 MMGYG 900 >gi|119964473|ref|YP_946300.1| LuxR family transcriptional regulator [Arthrobacter aurescens TC1] gi|119951332|gb|ABM10243.1| putative Transcriptional regulator, LuxR-family [Arthrobacter aurescens TC1] Length = 424 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 30/55 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L RE LQL G + IA LG+S +TV +L + KLD +R +AIA A Sbjct: 364 LAARELEVLQLLAAGQRNRTIATDLGISENTVKFHLRNLFRKLDVRSRTEAIALA 418 >gi|111026298|ref|YP_708581.1| protein kinase/ LuxR family transcriptional regulator [Rhodococcus jostii RHA1] gi|110825141|gb|ABH00423.1| protein kinase/ transcriptional regulator, LuxR family [Rhodococcus jostii RHA1] Length = 1090 Score = 35.0 bits (79), Expect = 8.7, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 T+RE +L +G T+ EIA +L +SV T ++ KL +R Q A Sbjct: 1029 TKREREVAELVAEGLTNREIASRLTISVRTAQGHIEHLLAKLGFTSRAQIAA 1080 >gi|146297938|ref|YP_001192529.1| response regulator receiver protein [Flavobacterium johnsoniae UW101] gi|146152356|gb|ABQ03210.1| response regulator receiver protein [Flavobacterium johnsoniae UW101] Length = 256 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 37/70 (52%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K +S + L++RE L+LA G S +IA L +SV+TV + + K+ N +A Sbjct: 185 KYKSLSETLLSKRELEILKLAAKGNNSGQIAGFLNISVYTVRRHRQNIIQKMQVSNTTEA 244 Query: 225 IAKAIRFGYI 234 + A+ G I Sbjct: 245 LRTALVMGLI 254 >gi|152967753|ref|YP_001363537.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151362270|gb|ABS05273.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 236 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A L+ RE L+L G + EIA LG+S +TV ++ + KL +R++A+ A+R Sbjct: 170 APRLSPRELDVLRLLARGMANREIAGSLGISENTVKNHVRNILEKLQLHSRMEAVVYAVR 229 >gi|46143282|ref|ZP_00135542.2| COG2909: ATP-dependent transcriptional regulator [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 905 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 32/52 (61%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L L GY++E+I+++L +++ T+ ++ + K+ NR +AI Sbjct: 841 LTAREWQVLGLIYSGYSNEQISQELVVAITTIKTHIRNLYQKIGVANRSEAI 892 >gi|317407768|gb|EFV87695.1| hypothetical protein HMPREF0005_03216 [Achromobacter xylosoxidans C54] Length = 223 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L G T E+A +L +S TV + + KL+ N + +A A+R G Sbjct: 162 SLTRREQQILALIATGATGTEVARRLYISPLTVRKHRENLMRKLEVHNTAELVAYAVRLG 221 >gi|284028612|ref|YP_003378543.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283807905|gb|ADB29744.1| transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 328 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 18/61 (29%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT E L+L G E++A LG+S+ T + + +LDA +R + A + G+ Sbjct: 268 LTPHEAEVLRLLAGGAKDEQVARLLGISLRTARRITANLSDRLDATSRFELGVAAAKRGW 327 Query: 234 I 234 + Sbjct: 328 V 328 >gi|256390165|ref|YP_003111729.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356391|gb|ACU69888.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 221 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ EIA +L +S HTV ++ + +KL +R+ A+ A G Sbjct: 155 LTPRERETLLLMARGASNAEIAARLFVSEHTVKTHVSNILMKLGLRDRVHAVIFAYDSGL 214 Query: 234 IC 235 + Sbjct: 215 VT 216 >gi|163732202|ref|ZP_02139648.1| DNA-binding response regulator, LuxR family, putative [Roseobacter litoralis Och 149] gi|161394500|gb|EDQ18823.1| DNA-binding response regulator, LuxR family, putative [Roseobacter litoralis Och 149] Length = 204 Score = 35.0 bits (79), Expect = 8.7, Method: Compositional matrix adjust. Identities = 22/63 (34%), Positives = 33/63 (52%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +R L++RE L G +++EIA L L T+ ++ + KLDA NR QA A Sbjct: 141 SRKLSQRERQVLSGLCTGKSNKEIARDLDLQEVTIKLHVRTLCKKLDAKNRTQAAMIARN 200 Query: 231 FGY 233 G+ Sbjct: 201 AGF 203 >gi|326625256|gb|EGE31601.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 902 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 837 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 896 Query: 228 AIRFG 232 + +G Sbjct: 897 MMGYG 901 >gi|317492389|ref|ZP_07950818.1| luxR family bacterial regulatory protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919728|gb|EFV41058.1| luxR family bacterial regulatory protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 215 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 35/65 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ S A LT+RE L G ++ EIA+ L +S +TV +L + K+ NR Q Sbjct: 145 YRYHSPEATGLTQREKEILNKLRAGASNTEIAKLLFISENTVKTHLYNLFKKISVKNRTQ 204 Query: 224 AIAKA 228 A++ A Sbjct: 205 AVSWA 209 >gi|317125624|ref|YP_004099736.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589712|gb|ADU49009.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 237 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 +P +A +R FH + +L + H T LEL + Sbjct: 120 VPPEEVAAGIRGVFHGQSLISPMMASKLLQEFAQMSRHEGTVPAATPELELPR------- 172 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L+L G + EIA +L +S +TV ++ + KL +R++A A+R Sbjct: 173 -LTERELGILRLVARGRLNREIARELFISENTVRNHIRNILDKLQMHSRMEAAMYAVR 229 >gi|297571832|ref|YP_003697606.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum DSM 20595] gi|296932179|gb|ADH92987.1| two component transcriptional regulator, LuxR family [Arcanobacterium haemolyticum DSM 20595] Length = 222 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 18/49 (36%), Positives = 27/49 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L+ERE ++L GYT E A +L +S+ TV ++ + KL NR Sbjct: 161 RLSEREQEVMRLIARGYTYRETATELFISIKTVETHVSAVLRKLQLSNR 209 >gi|262278733|ref|ZP_06056518.1| response regulator [Acinetobacter calcoaceticus RUH2202] gi|262259084|gb|EEY77817.1| response regulator [Acinetobacter calcoaceticus RUH2202] Length = 319 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 29/54 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + G T+++IAE L LS TVN +L KL NR A+A Sbjct: 256 QLTQREAEVMHWLLLGKTNKDIAEILELSPRTVNKHLEHVFEKLCVENRTAAVA 309 >gi|226304624|ref|YP_002764582.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|229494467|ref|ZP_04388230.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|226183739|dbj|BAH31843.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|229318829|gb|EEN84687.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 213 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 +EF+ N V+ +V++ + ++ R+LT RE+ L L +G ++EI Sbjct: 112 VAEFVDALNRVVDGGTVMDPEVVSQLMSR-RRADDPIRSLTPRESEVLGLMAEGLGNQEI 170 Query: 195 AEKLGLSVHTVNAYLGSATVKL 216 A KL +S V+ ++G+ KL Sbjct: 171 ARKLVVSDTAVSKHIGNIFAKL 192 >gi|168241659|ref|ZP_02666591.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205338850|gb|EDZ25614.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 901 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 Query: 228 AIRFG 232 + +G Sbjct: 896 MMGYG 900 >gi|167908280|ref|ZP_02495485.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] Length = 78 Score = 35.0 bits (79), Expect = 8.8, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+L G +++EIA + + TV +L + KLDA +R A+ +A+ G Sbjct: 14 LTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 73 Query: 234 I 234 + Sbjct: 74 L 74 >gi|198242561|ref|YP_002217475.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|226694941|sp|B5FKD6|MALT_SALDC RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|197937077|gb|ACH74410.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 902 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 837 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 896 Query: 228 AIRFG 232 + +G Sbjct: 897 MMGYG 901 >gi|163751244|ref|ZP_02158472.1| DNA-binding response regulator, LuxR family protein [Shewanella benthica KT99] gi|161328958|gb|EDQ00032.1| DNA-binding response regulator, LuxR family protein [Shewanella benthica KT99] Length = 219 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 3/86 (3%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 +L ++ + H ++ D L ++ + +LT ++ LQ+ +G +++IA LG Sbjct: 124 VLDGDIWLPDHAEIQEIKEDASALVARKLA---DLTPQQYKVLQMFAEGLLNKQIAYDLG 180 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAI 225 +S T+ A+ + KL NR QA+ Sbjct: 181 VSEATIKAHATAIFRKLGVRNRTQAV 206 >gi|62182017|ref|YP_218434.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75505503|sp|Q57IV9|MALT_SALCH RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|62129650|gb|AAX67353.1| transcriptional activator of the mal genes, binds inducer (maltotriose) and ATP (LysR familiy) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716505|gb|EFZ08076.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 901 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 Query: 228 AIRFG 232 + +G Sbjct: 896 MMGYG 900 >gi|91224660|ref|ZP_01259921.1| response regulator (repressor) in two-component regulatory system with UhpB (LuxR/UhpA family) protein [Vibrio alginolyticus 12G01] gi|262395391|ref|YP_003287244.1| transcriptional regulatory protein UhpA [Vibrio sp. Ex25] gi|91190548|gb|EAS76816.1| response regulator (repressor) in two-component regulatory system with UhpB (LuxR/UhpA family) protein [Vibrio alginolyticus 12G01] gi|262338985|gb|ACY52779.1| transcriptional regulatory protein UhpA [Vibrio sp. Ex25] Length = 202 Score = 35.0 bits (79), Expect = 8.8, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Query: 141 LANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 L V A G CY L+L +++ LT+RE QL G + +A +L Sbjct: 108 LIQAVRTSASGGCYLTSDIALKLATPSDNTTSLCQLTKRENEVCQLLATGLDVKSVAAEL 167 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQ 223 GLS TV+ + +A KL N ++ Sbjct: 168 GLSHKTVHVHRANAIDKLGVKNNVE 192 >gi|152966252|ref|YP_001362036.1| regulatory protein LuxR [Kineococcus radiotolerans SRS30216] gi|151360769|gb|ABS03772.1| regulatory protein LuxR [Kineococcus radiotolerans SRS30216] Length = 934 Score = 35.0 bits (79), Expect = 8.8, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 29/50 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT +E +LA G T++EIA+++ LS TV+ +L KL NR Q Sbjct: 871 LTAQELQIARLAAQGLTNKEIADRIYLSHRTVSTHLYKVFPKLGITNRRQ 920 >gi|239813574|ref|YP_002942484.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239800151|gb|ACS17218.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 227 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTER+ LQL G ++ I LG+S TV +L + L+ NR +A+ A Sbjct: 164 LTERQVEVLQLLSQGKPNKLIGRSLGISEGTVKIHLAAIFRALNVRNRTEAVVAA 218 >gi|194449062|ref|YP_002047540.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|226694944|sp|B4TKU2|MALT_SALHS RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|194407366|gb|ACF67585.1| maltose regulon activator MalT [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] Length = 901 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 Query: 228 AIRFG 232 + +G Sbjct: 896 MMGYG 900 >gi|116696371|ref|YP_841947.1| response regulator [Ralstonia eutropha H16] gi|113530870|emb|CAJ97217.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 239 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RET L G T+ EIA+ L LS T+ +++ + KL R QAI +A +G Sbjct: 178 LSARETEILVFINKGSTNREIADALSLSRLTIESHVKNIYKKLAVKTRTQAIFEARAYGV 237 Query: 234 I 234 + Sbjct: 238 L 238 >gi|56415430|ref|YP_152505.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161616560|ref|YP_001590525.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167549276|ref|ZP_02343035.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168232655|ref|ZP_02657713.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235112|ref|ZP_02660170.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168260756|ref|ZP_02682729.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465212|ref|ZP_02699104.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818669|ref|ZP_02830669.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442412|ref|YP_002042767.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194471178|ref|ZP_03077162.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736796|ref|YP_002116458.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249444|ref|YP_002148439.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197364360|ref|YP_002143997.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200386936|ref|ZP_03213548.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928833|ref|ZP_03220032.1| transcriptional regulator, LuxR family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207858755|ref|YP_002245406.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238910480|ref|ZP_04654317.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|81678107|sp|Q5PM00|MALT_SALPA RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|189028762|sp|A9MTT7|MALT_SALPB RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|226694940|sp|B5F8N2|MALT_SALA4 RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|226694942|sp|B5R375|MALT_SALEP RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|226694947|sp|B4SVL9|MALT_SALNS RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|226694955|sp|B5BHH3|MALT_SALPK RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|226694956|sp|B4TY75|MALT_SALSV RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|56129687|gb|AAV79193.1| MalT regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161365924|gb|ABX69692.1| hypothetical protein SPAB_04376 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401075|gb|ACF61297.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194457542|gb|EDX46381.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194712298|gb|ACF91519.1| maltose regulon activator MalT [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632215|gb|EDX50699.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197095837|emb|CAR61410.1| MalT regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213147|gb|ACH50544.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197291444|gb|EDY30796.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199604034|gb|EDZ02579.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322266|gb|EDZ07464.1| transcriptional regulator, LuxR family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325834|gb|EDZ13673.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205333091|gb|EDZ19855.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344399|gb|EDZ31163.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350209|gb|EDZ36840.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710558|emb|CAR34916.1| MalT regulatory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|320087931|emb|CBY97693.1| HTH-type transcriptional regulator malT ATP-dependent transcriptional activator malT [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322614111|gb|EFY11047.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618003|gb|EFY14896.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625383|gb|EFY22209.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629848|gb|EFY26621.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632263|gb|EFY29014.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636386|gb|EFY33093.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322643242|gb|EFY39811.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644757|gb|EFY41293.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651219|gb|EFY47603.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654913|gb|EFY51228.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659170|gb|EFY55422.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322663129|gb|EFY59333.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668615|gb|EFY64768.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674581|gb|EFY70674.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678213|gb|EFY74274.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682530|gb|EFY78551.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322684243|gb|EFY80249.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192202|gb|EFZ77434.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196372|gb|EFZ81524.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201827|gb|EFZ86890.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206369|gb|EFZ91330.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211962|gb|EFZ96789.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216868|gb|EGA01591.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222267|gb|EGA06650.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224282|gb|EGA08571.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323228210|gb|EGA12341.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233523|gb|EGA17616.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237015|gb|EGA21082.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243770|gb|EGA27786.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323245988|gb|EGA29975.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323250764|gb|EGA34642.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255775|gb|EGA39525.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261367|gb|EGA44953.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267660|gb|EGA51142.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268540|gb|EGA52007.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 901 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 Query: 228 AIRFG 232 + +G Sbjct: 896 MMGYG 900 >gi|16766803|ref|NP_462418.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167990722|ref|ZP_02571821.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|46577100|sp|Q8ZLI3|MALT_SALTY RecName: Full=HTH-type transcriptional regulator malT; AltName: Full=ATP-dependent transcriptional activator malT gi|16422075|gb|AAL22377.1| transcriptional activator of the mal genes [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205330640|gb|EDZ17404.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261248670|emb|CBG26508.1| MalT regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267995739|gb|ACY90624.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160058|emb|CBW19577.1| MalT regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914539|dbj|BAJ38513.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321226566|gb|EFX51616.1| Transcriptional activator of maltose regulon, MalT [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131875|gb|ADX19305.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990367|gb|AEF09350.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 901 Score = 35.0 bits (79), Expect = 8.9, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 895 Query: 228 AIRFG 232 + +G Sbjct: 896 MMGYG 900 >gi|284041724|ref|YP_003392064.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945945|gb|ADB48689.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 218 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%) Query: 152 ACYQVITDFLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A ++ I L L SA LTERE L+L G ++ EIA +L +S TV ++ Sbjct: 131 ALFERIAPMLHLDAAPPPSALGELTERELDVLRLLARGLSNGEIAAQLFVSGATVKTHVS 190 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+QA+ A G + Sbjct: 191 HLLRKLCLRDRVQAVVFAYDSGLV 214 >gi|239927392|ref|ZP_04684345.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291435736|ref|ZP_06575126.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291338631|gb|EFE65587.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 636 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 29/49 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT R+ + LA G ++ +IAE+L LSV TV +L A +L A +R Sbjct: 573 ELTARQRQIVTLAAAGLSNRQIAERLTLSVRTVGNHLYGAYARLGAGDR 621 >gi|227505299|ref|ZP_03935348.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227198097|gb|EEI78145.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 217 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 21/50 (42%), Positives = 26/50 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L+L GYT EI E+L +SV TV + + K NR Q Sbjct: 157 LTRRELEVLRLLARGYTYREIGERLFISVKTVETHASNILRKTQQSNRHQ 206 >gi|224585310|ref|YP_002639109.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224469838|gb|ACN47668.1| transcriptional regulator MalT [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 904 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 6/65 (9%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL------DAVNRIQAIAK 227 LT+RE L L GY++E+IA +L ++ T+ ++ + KL DAV Q + K Sbjct: 839 LTQREWQVLGLIYSGYSNEQIAGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLK 898 Query: 228 AIRFG 232 + +G Sbjct: 899 MMGYG 903 >gi|158318246|ref|YP_001510754.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113651|gb|ABW15848.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 215 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 29/51 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +LT RE + L G G +++EIA +L +S T ++ VKL A +R Q Sbjct: 153 SLTVREREVMGLVGLGLSNDEIAARLVISPATARTHVSRVMVKLSARDRAQ 203 >gi|332297184|ref|YP_004439106.1| two component transcriptional regulator, LuxR family [Treponema brennaborense DSM 12168] gi|332180287|gb|AEE15975.1| two component transcriptional regulator, LuxR family [Treponema brennaborense DSM 12168] Length = 231 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A G Y + + E +KK +++ LT+RE L D ++++IA+K+ +S TV Y Sbjct: 154 AAGGTY-IDSGLYEEYKKDAASPDILTKREREVLIYVQDYLSNQQIADKMNISTRTVENY 212 Query: 209 LGSATVKLDAVNR 221 L K D R Sbjct: 213 LSRLYEKTDVFCR 225 >gi|325964357|ref|YP_004242263.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470444|gb|ADX74129.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 241 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 31/61 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G + EIA KL LS TV ++ +KL +R QA+A A R G Sbjct: 178 LTAREREVLGAMAVGLKNAEIANKLFLSETTVKTHVHRILLKLGLSDRSQAVAVAYRSGL 237 Query: 234 I 234 I Sbjct: 238 I 238 >gi|284046997|ref|YP_003397337.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951218|gb|ADB53962.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 223 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 19/49 (38%), Positives = 25/49 (51%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT RE L GY + IA +LG+S TV ++GS KL +R Sbjct: 155 QLTPREREVLHHLARGYAYKRIAARLGISPRTVETHVGSVLRKLQLSSR 203 >gi|237747660|ref|ZP_04578140.1| response regulator receiver protein [Oxalobacter formigenes OXCC13] gi|229379022|gb|EEO29113.1| response regulator receiver protein [Oxalobacter formigenes OXCC13] Length = 206 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 31/52 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE +L G +++ +A++L ++ TV A+L S KLD +R+Q + Sbjct: 148 LTRRELEIARLVNKGCSNKAVAKELDIAERTVKAHLSSIFEKLDVKDRLQLV 199 >gi|78484154|dbj|BAE47185.1| response-regulator protein [Streptomyces sp. AJ9463] Length = 216 Score = 35.0 bits (79), Expect = 9.0, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L GDG ++ EIA +L ++ TV ++ KL+ +R+QA A G Sbjct: 157 LTRREREVLGCLGDGLSNAEIAVRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQELG 215 >gi|313896828|ref|ZP_07830375.1| putative oxygen regulatory protein NreC [Selenomonas sp. oral taxon 137 str. F0430] gi|312974275|gb|EFR39743.1| putative oxygen regulatory protein NreC [Selenomonas sp. oral taxon 137 str. F0430] Length = 217 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 24/62 (38%), Positives = 29/62 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE GYT E AE+L LS TV+ + KL R +A AIR G Sbjct: 151 RLTEREKEVFDRLIRGYTVTETAEQLHLSGKTVDTHKTHIYEKLGCSRRSDLVALAIRHG 210 Query: 233 YI 234 + Sbjct: 211 LL 212 >gi|312128575|ref|YP_003993449.1| LuxR family transcriptional regulator [Caldicellulosiruptor hydrothermalis 108] gi|311778594|gb|ADQ08080.1| transcriptional regulator, LuxR family [Caldicellulosiruptor hydrothermalis 108] Length = 68 Score = 35.0 bits (79), Expect = 9.1, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 32/53 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ RE ++L +G T++EIA L +S TV Y+ + +KL+ +R + IA Sbjct: 6 LSYREREIVKLIAEGMTNKEIAVILNISEKTVKTYVKNIMLKLEVDSRYKIIA 58 >gi|298245303|ref|ZP_06969109.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552784|gb|EFH86649.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 221 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +TERE L L GYT+++IAE L +S T ++ KL R +A A+ Sbjct: 148 ITEREREVLALVARGYTNKQIAEGLSMSEKTARNHVSHILEKLGLTRRSEAAVYAVEHNL 207 Query: 234 I 234 + Sbjct: 208 V 208 >gi|297538580|ref|YP_003674349.1| two component LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257927|gb|ADI29772.1| two component transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 212 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 33/64 (51%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS +LTERE L+ +G ++ IA LG+S TV ++ KL +R++A Sbjct: 147 RSEEEVSLTEREREILECLANGLNNKTIARSLGISDTTVKVHIKHLLSKLKLTSRLEAAV 206 Query: 227 KAIR 230 A R Sbjct: 207 WAHR 210 >gi|326318896|ref|YP_004236568.1| LuxR family two component transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375732|gb|ADX48001.1| two component transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 219 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 18/35 (51%), Positives = 23/35 (65%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 LT RE+ L G G +S++IA LGLSV TV A+ Sbjct: 154 LTPRESEILAALGRGASSKQIACDLGLSVRTVEAH 188 >gi|269797048|ref|YP_003316503.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269099233|gb|ACZ23669.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 221 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 30/63 (47%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G T+++IA +L +S HT ++ K+D +R + A G Sbjct: 156 RLTEREREVFLLVAAGRTNQDIAAELVISTHTAKTHVNRIMTKVDVRDRAHLVILAYESG 215 Query: 233 YIC 235 + Sbjct: 216 LVT 218 >gi|258622130|ref|ZP_05717156.1| malT regulatory protein, positive regulatory protein [Vibrio mimicus VM573] gi|258585454|gb|EEW10177.1| malT regulatory protein, positive regulatory protein [Vibrio mimicus VM573] Length = 902 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVHTA 893 >gi|238854471|ref|ZP_04644810.1| Two-component response regulator [Lactobacillus jensenii 269-3] gi|260665481|ref|ZP_05866328.1| two-component system response regulator [Lactobacillus jensenii SJ-7A-US] gi|282934541|ref|ZP_06339793.1| oxygen regulatory protein NreC [Lactobacillus jensenii 208-1] gi|313471834|ref|ZP_07812326.1| Two-component response regulator [Lactobacillus jensenii 1153] gi|238832898|gb|EEQ25196.1| Two-component response regulator [Lactobacillus jensenii 269-3] gi|239530121|gb|EEQ69122.1| Two-component response regulator [Lactobacillus jensenii 1153] gi|260560749|gb|EEX26726.1| two-component system response regulator [Lactobacillus jensenii SJ-7A-US] gi|281301379|gb|EFA93671.1| oxygen regulatory protein NreC [Lactobacillus jensenii 208-1] Length = 201 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L++ T++E+A++L LS TV Y+ S K +R++A+ A G+ Sbjct: 141 LTKRELEILKMLEQVATTKELAQRLFLSEGTVRNYISSILSKTGTASRLEALNLARDKGW 200 Query: 234 I 234 I Sbjct: 201 I 201 >gi|222152374|ref|YP_002561549.1| response regulator protein [Streptococcus uberis 0140J] gi|222113185|emb|CAR40638.1| response regulator protein [Streptococcus uberis 0140J] Length = 226 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 33/62 (53%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +L++ E +Q G G ++ EIA+KL LS TV YL + KL +R Q +++ Sbjct: 154 VESLSKAEWKIIQQVGFGLSNREIAQKLFLSEGTVRNYLSNVLAKLQLRDRTQLAIWSVQ 213 Query: 231 FG 232 G Sbjct: 214 TG 215 >gi|297199555|ref|ZP_06916952.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197713519|gb|EDY57553.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 22/62 (35%), Positives = 30/62 (48%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L L G + EIAE LGLS T ++ KL A +R Q + A G Sbjct: 156 LSDREREVLALVARGLNNTEIAETLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGT 215 Query: 234 IC 235 + Sbjct: 216 VT 217 >gi|33239646|ref|NP_874588.1| two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237171|gb|AAP99240.1| Two-component response regulator [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 242 Score = 35.0 bits (79), Expect = 9.1, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 30/57 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + T RE S LQL +G ++EIA +L S+ V Y+ +K +R + + A+ Sbjct: 180 SFTPREASVLQLVAEGLMNKEIARQLETSIRNVEKYVSRLFIKTGTSSRTELVRYAL 236 >gi|329667775|gb|AEB93723.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 224 Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 32/62 (51%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++ + E +Q G G +++EIA KL LS TV Y+ KLD +R Q A++ Sbjct: 154 TKDFSRSEWCVIQQVGLGLSNKEIATKLFLSEGTVRNYISKILEKLDLRDRTQLAIWAVQ 213 Query: 231 FG 232 G Sbjct: 214 TG 215 >gi|328886152|emb|CCA59391.1| Hemoglobin-dependent two component system response regulator HrrA [Streptomyces venezuelae ATCC 10712] Length = 208 Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 29/47 (61%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 L + + A LT RE LQL G+G ++++I++ L LS TV ++L Sbjct: 135 LMDRMRTPAEALTRRELEVLQLVGEGLSNQQISKVLFLSQATVKSHL 181 >gi|262165666|ref|ZP_06033403.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus VM223] gi|262025382|gb|EEY44050.1| glycerol metabolism activator (Protein agmR) [Vibrio mimicus VM223] Length = 222 Score = 35.0 bits (79), Expect = 9.2, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 32/62 (51%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT ++ LQ G +++IA L +S TV +++ + KL NRIQA+ A Sbjct: 155 QTLTRKQLQVLQFMSKGSANKQIAYDLNISETTVKSHVSAILKKLGVHNRIQAVLGATNI 214 Query: 232 GY 233 + Sbjct: 215 DF 216 >gi|331700142|ref|YP_004336381.1| regulatory protein LuxR [Pseudonocardia dioxanivorans CB1190] gi|326954831|gb|AEA28528.1| regulatory protein LuxR [Pseudonocardia dioxanivorans CB1190] Length = 369 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AAR LT RE + G +++ IA L LS HTV +L + KL +R + IA+ + Sbjct: 301 AARGLTAREQDVAVMVLKGASTKVIASALHLSPHTVQDHLKAVFRKLGVSSRREMIARLV 360 >gi|326381846|ref|ZP_08203539.1| hypothetical protein SCNU_02832 [Gordonia neofelifaecis NRRL B-59395] gi|326199272|gb|EGD56453.1| hypothetical protein SCNU_02832 [Gordonia neofelifaecis NRRL B-59395] Length = 210 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L + + +LT RE + L G T+ EIA++L +S TV ++L KLD +R Sbjct: 137 KLLTRVTDTRPSLTARELEVVVLLDAGLTNREIAKRLFISEATVKSHLVHIFDKLDVTSR 196 Query: 222 IQAIAKAIRFGYI 234 + +A A + G I Sbjct: 197 SKVVATARQRGLI 209 >gi|319791283|ref|YP_004152923.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315593746|gb|ADU34812.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 230 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 29/55 (52%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTER+ LQL G ++ I LG+S TV +L + L+ NR +A+ A Sbjct: 167 LTERQVEVLQLLSQGKPNKLIGRSLGISEGTVKIHLAAIFRALNVRNRTEAVVAA 221 >gi|294010458|ref|YP_003543918.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292673788|dbj|BAI95306.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 248 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 77/192 (40%), Gaps = 31/192 (16%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLL----PI-----------IWQSIQEETVI 98 +H+ DL + ++ I Y D++ F + L PI W ++Q + Sbjct: 43 VHHVDLKPA-VRSVHIVDYPQDWVERFQARRLYASDPIHRASHRTNVGFAWSAVQSIISL 101 Query: 99 ESSGQ--LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156 ++ + L+ E GL G P + NG + F M A E++ Q+ Sbjct: 102 TAADRSILAEAYEAGLGD--GFTVPAHIPGELNG----SCSFAMAAGEMLDHRQLPFVQL 155 Query: 157 ITDF-LELFKKRS------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 + F E +K S S +LTER+ C+ L G T EI++ LG+ TV ++ Sbjct: 156 VGSFAFEAARKISRIHAPQSEWPSLTERQAECVALVARGKTDWEISQILGIGQETVIQHV 215 Query: 210 GSATVKLDAVNR 221 A + R Sbjct: 216 KDARDRYGVTKR 227 >gi|291617509|ref|YP_003520251.1| EanR [Pantoea ananatis LMG 20103] gi|151175682|dbj|BAF69065.1| AHL-dependent transcriptional regulator [Pantoea ananatis] gi|291152539|gb|ADD77123.1| EanR [Pantoea ananatis LMG 20103] gi|327393946|dbj|BAK11368.1| transcriptional activator protein EanR [Pantoea ananatis AJ13355] Length = 249 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 21/52 (40%), Positives = 26/52 (50%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + RE L A G T EIA G+SV TV ++ + VKL N QAI Sbjct: 181 FSSRENEVLYWASMGKTYSEIAAITGISVSTVKFHIKNVVVKLGVSNARQAI 232 >gi|85708816|ref|ZP_01039882.1| hypothetical protein NAP1_06235 [Erythrobacter sp. NAP1] gi|85690350|gb|EAQ30353.1| hypothetical protein NAP1_06235 [Erythrobacter sp. NAP1] Length = 263 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 19/43 (44%), Positives = 27/43 (62%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LT++E L+L GY ++ A +L +SVHT+N L SA KL Sbjct: 8 LTDKEKEALRLLLAGYDAKSSANELDISVHTLNDRLRSARRKL 50 >gi|306832609|ref|ZP_07465748.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|304425217|gb|EFM28344.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] Length = 227 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++++ E +Q G G +++EIA KL LS TV YL S KL+ +R Q A++ G Sbjct: 156 DISKMEWRIIQQIGFGLSNKEIAAKLYLSEGTVRNYLSSILSKLNLRDRTQLAIWAVQTG 215 >gi|293393262|ref|ZP_06637577.1| response regulator [Serratia odorifera DSM 4582] gi|291424408|gb|EFE97622.1| response regulator [Serratia odorifera DSM 4582] Length = 206 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 5/93 (5%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERETSCLQL 184 KNG F ++ + +++ EA GA + E KKR + LT RE + ++ Sbjct: 96 KNGAFEFLTK--PIDADLLFEAIGAAMEQQKTGHEQQKKRLLLQARLATLTARENAIFEI 153 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 GY+++EIA + LS TV A+ + KL+ Sbjct: 154 IMKGYSNKEIARQFSLSPRTVEAHRANIFAKLE 186 >gi|262173209|ref|ZP_06040886.1| transcriptional activator of maltose regulon MalT [Vibrio mimicus MB-451] gi|261890567|gb|EEY36554.1| transcriptional activator of maltose regulon MalT [Vibrio mimicus MB-451] Length = 902 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVHTA 893 >gi|209695582|ref|YP_002263511.1| response regulator [Aliivibrio salmonicida LFI1238] gi|208009534|emb|CAQ79826.1| response regulator VarA [Aliivibrio salmonicida LFI1238] Length = 214 Score = 35.0 bits (79), Expect = 9.3, Method: Compositional matrix adjust. Identities = 21/63 (33%), Positives = 32/63 (50%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L+ERE + + G +I+E+L LS TVN+Y KLD ++ AIR Sbjct: 147 KELSERELQIMIMITKGEKVTDISEQLNLSPKTVNSYRYRLFSKLDISGDVELTHLAIRH 206 Query: 232 GYI 234 G + Sbjct: 207 GIL 209 >gi|311277648|ref|YP_003939879.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Enterobacter cloacae SCF1] gi|308746843|gb|ADO46595.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Enterobacter cloacae SCF1] Length = 901 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 32/58 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L GY++E+IA +L ++ T+ ++ + KL +R A+ A R Sbjct: 836 LTQREWQVLGLIYSGYSNEQIAGELDVAATTIKTHIRNLYQKLGVAHRQDAVLHAQRL 893 >gi|296394763|ref|YP_003659647.1| LuxR family two component transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296181910|gb|ADG98816.1| two component transcriptional regulator, LuxR family [Segniliparus rotundus DSM 44985] Length = 217 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 19/52 (36%), Positives = 29/52 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LTE+E L L G+G T+ +IA+++ L+ T+ Y+ KL R QA Sbjct: 149 RLTEQERVLLDLIGEGLTNRQIAQRMFLAEKTIKNYVSRLLTKLGLDRRTQA 200 >gi|291297848|ref|YP_003509126.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567068|gb|ADD40033.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 337 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 31/60 (51%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TE E L L G T E IAE++G+S+ T+ L +L A R QA +A G+I Sbjct: 273 TEIERQLLMLLTAGLTDERIAERMGVSLRTMQRRLRELLERLGATTRFQAGIRATLQGWI 332 >gi|300779752|ref|ZP_07089608.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533862|gb|EFK54921.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 220 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 27/51 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L+L GYT +EIA +L +SV TV + + K NR Q Sbjct: 159 KLTRRELEVLRLLARGYTYKEIASELFISVKTVETHASNVLRKTQTSNRHQ 209 >gi|238060047|ref|ZP_04604756.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|237881858|gb|EEP70686.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] Length = 264 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 26/52 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L+ G T+ IA + GLS TV L + KL +R+QA Sbjct: 202 RLTPRERDILRHLATGETNARIARRFGLSEKTVRNQLSAVFAKLGVTDRVQA 253 >gi|33357861|pdb|1P4W|A Chain A, Solution Structure Of The Dna-Binding Domain Of The Erwinia Amylovora Rcsb Protein Length = 99 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 31/51 (60%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL N I Sbjct: 33 KRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVDNDI 83 >gi|145224429|ref|YP_001135107.1| two component LuxR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|145216915|gb|ABP46319.1| two component transcriptional regulator, LuxR family [Mycobacterium gilvum PYR-GCK] Length = 216 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +R+ LT++E L L G+G T+++IA ++ L+ TV Y+ KL R QA Sbjct: 142 ERTDPLSGLTDQERVLLDLLGEGLTNKQIAARMFLAEKTVKNYVSRLLAKLGMERRTQA 200 >gi|330465133|ref|YP_004402876.1| LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328808104|gb|AEB42276.1| LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 386 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 34/65 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R +A LT RE L G +++++A LG+SV TV ++ + K A +R +A Sbjct: 301 PRVAAVAELTGREVEVLDCLVAGMSNKQVARALGISVRTVTVHVSNLLRKTGAASRTEAA 360 Query: 226 AKAIR 230 A+R Sbjct: 361 LWAVR 365 >gi|327189418|gb|EGE56584.1| LuxR family transcriptional regulator [Rhizobium etli CNPAF512] Length = 65 Score = 35.0 bits (79), Expect = 9.5, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 30/61 (49%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE + G T+ EI L +S TVN ++ +A KL +A+A+R G Sbjct: 4 VTPREREIIGWMAAGKTAAEIGAILAISPITVNTHIANAKAKLGVFKETALVAEALRNGI 63 Query: 234 I 234 I Sbjct: 64 I 64 >gi|300716150|ref|YP_003740953.1| regulatory protein [Erwinia billingiae Eb661] gi|299061986|emb|CAX59102.1| Regulatory protein [Erwinia billingiae Eb661] Length = 240 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 2/79 (2%) Query: 156 VITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 +I + L+ K S + N L++RE L+ +G TS EI+ L +S +TVN + Sbjct: 160 LIMEALQQVKDISMSVMNMELSQRELEILKWTAEGKTSAEISLILSISENTVNFHQKKMQ 219 Query: 214 VKLDAVNRIQAIAKAIRFG 232 + +A N+ Q + A G Sbjct: 220 KRFNAPNKTQVASYAAAIG 238 >gi|269958095|ref|YP_003327884.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306776|gb|ACZ32326.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 223 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 33/55 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 A LT+RET L+L G+ + EI+++L L+ TV + + KL A +R +A+ Sbjct: 156 AARLTDRETEVLELMAAGWGNAEISQRLYLAPKTVRNNVSTILGKLQASSRGEAV 210 >gi|222082949|ref|YP_002542314.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221727628|gb|ACM30717.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 219 Score = 35.0 bits (79), Expect = 9.5, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 32/59 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L+ G TS ++AE+LG+S T + + KL+ + + A A+R G Sbjct: 157 LTLRERQVLLLSAQGQTSRQMAERLGISPLTARKHRENLMRKLNLHSTAEVTAYAVRLG 215 >gi|310822246|ref|YP_003954604.1| LuxR family transcriptional regulator [Stigmatella aurantiaca DW4/3-1] gi|309395318|gb|ADO72777.1| Transcriptional regulator, LuxR family protein [Stigmatella aurantiaca DW4/3-1] Length = 394 Score = 34.7 bits (78), Expect = 9.6, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 3/63 (4%) Query: 162 ELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 E F +R AAR+L T R+ L LA G T++EIA +LG TV ++ K A Sbjct: 321 EAFSQRLLAARHLWALTARQADVLTLAVQGKTNKEIALELGCQKSTVELHMSHILRKCGA 380 Query: 219 VNR 221 NR Sbjct: 381 DNR 383 >gi|325676385|ref|ZP_08156064.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325552946|gb|EGD22629.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 236 Score = 34.7 bits (78), Expect = 9.6, Method: Compositional matrix adjust. Identities = 19/51 (37%), Positives = 28/51 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L+++E + L G G T+ EIAE+L L+ T+ Y+ KL R QA Sbjct: 175 LSDQERAVFDLIGQGLTNREIAERLFLAEKTIKNYVSRLLAKLGMQRRTQA 225 >gi|291617472|ref|YP_003520214.1| MalT [Pantoea ananatis LMG 20103] gi|291152502|gb|ADD77086.1| MalT [Pantoea ananatis LMG 20103] Length = 912 Score = 34.7 bits (78), Expect = 9.6, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L GY++E+IA +L ++ T+ ++ + KL +R +A+ +A Sbjct: 848 LTQREWQVLGLIYSGYSNEQIAAELDVASTTIKTHIRNLYQKLGITHRAEAMTQA 902 >gi|315444762|ref|YP_004077641.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] gi|315263065|gb|ADT99806.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] Length = 216 Score = 34.7 bits (78), Expect = 9.7, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +R+ LT++E L L G+G T+++IA ++ L+ TV Y+ KL R QA Sbjct: 142 ERTDPLSGLTDQERVLLDLLGEGLTNKQIAARMFLAEKTVKNYVSRLLAKLGMERRTQA 200 >gi|262403163|ref|ZP_06079723.1| transcriptional activator of maltose regulon MalT [Vibrio sp. RC586] gi|262350662|gb|EEY99795.1| transcriptional activator of maltose regulon MalT [Vibrio sp. RC586] Length = 902 Score = 34.7 bits (78), Expect = 9.7, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L G+++E+IA +L ++ T+ ++ + KL+ NR +A+ A Sbjct: 839 LTQREWQVLGLIYSGFSNEQIAHELDVAGTTIKTHIRNLYQKLNIANRKEAVHTA 893 >gi|256376351|ref|YP_003100011.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920654|gb|ACU36165.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 209 Score = 34.7 bits (78), Expect = 9.7, Method: Compositional matrix adjust. Identities = 17/51 (33%), Positives = 30/51 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT+RE L+ G+G ++ +I +L + TV ++ +KLD +R+QA Sbjct: 146 LTDREVDVLRCLGEGLSNAQIGTRLRIGETTVKTHVSRVLMKLDLRSRVQA 196 >gi|238064361|ref|ZP_04609070.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237886172|gb|EEP75000.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 229 Score = 34.7 bits (78), Expect = 9.7, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L G ++ IAE+L +S T ++ KL A +R Q + A + G+ Sbjct: 158 LTEREREVLTLVAAGLSNNAIAERLYVSPLTAKTHVNRIMAKLGARDRAQLVVVAYQTGF 217 >gi|21223147|ref|NP_628926.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|29831541|ref|NP_826175.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|182436552|ref|YP_001824271.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|239929430|ref|ZP_04686383.1| putative two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|239979981|ref|ZP_04702505.1| putative two-component system response regulator [Streptomyces albus J1074] gi|239990114|ref|ZP_04710778.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|254383110|ref|ZP_04998464.1| two-component system response regulator [Streptomyces sp. Mg1] gi|254392007|ref|ZP_05007198.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|256785756|ref|ZP_05524187.1| putative two-component system response regulator [Streptomyces lividans TK24] gi|282860879|ref|ZP_06269945.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|289769648|ref|ZP_06529026.1| two-component system response regulator [Streptomyces lividans TK24] gi|290958081|ref|YP_003489263.1| luxR family regulator [Streptomyces scabiei 87.22] gi|291437756|ref|ZP_06577146.1| two-component regulator [Streptomyces ghanaensis ATCC 14672] gi|291447128|ref|ZP_06586518.1| whiK [Streptomyces roseosporus NRRL 15998] gi|291451838|ref|ZP_06591228.1| whiK [Streptomyces albus J1074] gi|294630967|ref|ZP_06709527.1| two-component system, regulatory protein [Streptomyces sp. e14] gi|294814529|ref|ZP_06773172.1| Two component transcriptional regulator, LuxR family [Streptomyces clavuligerus ATCC 27064] gi|295838473|ref|ZP_06825406.1| two-component system, regulatory protein [Streptomyces sp. SPB74] gi|297192634|ref|ZP_06910032.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297201810|ref|ZP_06919207.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|302519583|ref|ZP_07271925.1| whiK [Streptomyces sp. SPB78] gi|302536316|ref|ZP_07288658.1| whiK [Streptomyces sp. C] gi|302543269|ref|ZP_07295611.1| two-component system, regulatory protein [Streptomyces hygroscopicus ATCC 53653] gi|302553613|ref|ZP_07305955.1| two-component system, regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302558923|ref|ZP_07311265.1| two-component system, regulatory protein [Streptomyces griseoflavus Tu4000] gi|307331078|ref|ZP_07610207.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|318058051|ref|ZP_07976774.1| luxR family regulator [Streptomyces sp. SA3_actG] gi|318080229|ref|ZP_07987561.1| luxR family regulator [Streptomyces sp. SA3_actF] gi|326442919|ref|ZP_08217653.1| luxR family regulator [Streptomyces clavuligerus ATCC 27064] gi|326777175|ref|ZP_08236440.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|329938172|ref|ZP_08287623.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|333026588|ref|ZP_08454652.1| putative two-component regulator [Streptomyces sp. Tu6071] gi|3449280|emb|CAA20424.1| putative two-component regulator [Streptomyces coelicolor A3(2)] gi|3618247|emb|CAA09263.1| whiK [Streptomyces coelicolor A3(2)] gi|29608657|dbj|BAC72710.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] gi|178465068|dbj|BAG19588.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|194342009|gb|EDX22975.1| two-component system response regulator [Streptomyces sp. Mg1] gi|197695725|gb|EDY42658.1| two-component system, regulatory protein [Streptomyces sp. SPB74] gi|197705685|gb|EDY51497.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197717529|gb|EDY61563.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197722965|gb|EDY66873.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|260647607|emb|CBG70712.1| putative luxR family regulator [Streptomyces scabiei 87.22] gi|282564615|gb|EFB70151.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|289699847|gb|EFD67276.1| two-component system response regulator [Streptomyces lividans TK24] gi|291340651|gb|EFE67607.1| two-component regulator [Streptomyces ghanaensis ATCC 14672] gi|291350075|gb|EFE76979.1| whiK [Streptomyces roseosporus NRRL 15998] gi|291354787|gb|EFE81689.1| whiK [Streptomyces albus J1074] gi|292834300|gb|EFF92649.1| two-component system, regulatory protein [Streptomyces sp. e14] gi|294327128|gb|EFG08771.1| Two component transcriptional regulator, LuxR family [Streptomyces clavuligerus ATCC 27064] gi|297159676|gb|ADI09388.1| putative luxR family regulator [Streptomyces bingchenggensis BCW-1] gi|302428478|gb|EFL00294.1| whiK [Streptomyces sp. SPB78] gi|302445211|gb|EFL17027.1| whiK [Streptomyces sp. C] gi|302460887|gb|EFL23980.1| two-component system, regulatory protein [Streptomyces himastatinicus ATCC 53653] gi|302471231|gb|EFL34324.1| two-component system, regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302476541|gb|EFL39634.1| two-component system, regulatory protein [Streptomyces griseoflavus Tu4000] gi|306883289|gb|EFN14346.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|320009036|gb|ADW03886.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] gi|326657508|gb|EGE42354.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|328884500|emb|CCA57739.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] gi|329302661|gb|EGG46551.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|332746440|gb|EGJ76881.1| putative two-component regulator [Streptomyces sp. Tu6071] Length = 203 Score = 34.7 bits (78), Expect = 9.7, Method: Compositional matrix adjust. Identities = 23/65 (35%), Positives = 32/65 (49%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AA LT RE L+ G ++ EI +L LS TV + KL A +R A+A Sbjct: 138 AAPTLTAREIQVLEGMSHGRSNAEIGRELFLSEDTVKTHARRLFKKLGASDRAHAVALGF 197 Query: 230 RFGYI 234 R+G + Sbjct: 198 RWGLV 202 >gi|332978744|gb|EGK15437.1| DNA-binding response regulator [Psychrobacter sp. 1501(2011)] Length = 213 Score = 34.7 bits (78), Expect = 9.7, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ R L L +G +++EIA+ L +S HTV ++ + NR Q I +A R GY Sbjct: 149 LSNRLLEVLALLAEGISNKEIADHLCISEHTVRNHIATLMSHFSVHNRTQIIIEAQRAGY 208 Query: 234 I 234 + Sbjct: 209 L 209 >gi|303326587|ref|ZP_07357030.1| putative twin-arginine translocation pathway signal [Desulfovibrio sp. 3_1_syn3] gi|302864503|gb|EFL87434.1| putative twin-arginine translocation pathway signal [Desulfovibrio sp. 3_1_syn3] Length = 598 Score = 34.7 bits (78), Expect = 9.7, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 35/69 (50%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +R L+ RE L L G ++ +IA +L LS TV ++ + +KL NR+ A+ Sbjct: 103 RRIDPPWGLSLRELDVLTLLSAGLSNPDIAHELFLSPRTVAKHVENIFIKLAVKNRVHAV 162 Query: 226 AKAIRFGYI 234 A+ G + Sbjct: 163 RLALDHGLV 171 >gi|320007624|gb|ADW02474.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 248 Score = 34.7 bits (78), Expect = 9.7, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 27/51 (52%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L ERE G G ++ EIA +L LSV TV A++ +L NR+Q Sbjct: 168 GLGEREQDVASAVGRGRSNAEIAAELHLSVATVKAHVSRILARLGLNNRVQ 218 >gi|115376820|ref|ZP_01464044.1| transcriptional regulator, LuxR family protein [Stigmatella aurantiaca DW4/3-1] gi|115366182|gb|EAU65193.1| transcriptional regulator, LuxR family protein [Stigmatella aurantiaca DW4/3-1] Length = 419 Score = 34.7 bits (78), Expect = 9.7, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 3/63 (4%) Query: 162 ELFKKRSSAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 E F +R AAR+L T R+ L LA G T++EIA +LG TV ++ K A Sbjct: 346 EAFSQRLLAARHLWALTARQADVLTLAVQGKTNKEIALELGCQKSTVELHMSHILRKCGA 405 Query: 219 VNR 221 NR Sbjct: 406 DNR 408 >gi|94497071|ref|ZP_01303644.1| two component transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] gi|294010467|ref|YP_003543927.1| CheY-like response regulator [Sphingobium japonicum UT26S] gi|307296689|ref|ZP_07576508.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] gi|94423443|gb|EAT08471.1| two component transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] gi|292673797|dbj|BAI95315.1| CheY-like response regulator [Sphingobium japonicum UT26S] gi|306877818|gb|EFN09043.1| two component transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 211 Score = 34.7 bits (78), Expect = 9.7, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 5/66 (7%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S AAR LT+RE + L+ GY + IA++LG++ TV + S +KL+A Q++ Sbjct: 138 SKAAR-LTQRERAVLRGISRGYPNSLIADELGVTSRTVELHRASLMIKLNA----QSLPD 192 Query: 228 AIRFGY 233 +R + Sbjct: 193 LLRIAF 198 >gi|120406420|ref|YP_956249.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959238|gb|ABM16243.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 212 Score = 34.7 bits (78), Expect = 9.7, Method: Compositional matrix adjust. Identities = 21/68 (30%), Positives = 36/68 (52%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS + LT+RE L+L G ++ +I E+L +S T ++ + KL+ R +A+ Sbjct: 145 RSESRAQLTDREVEVLRLLAAGLSNNKIGERLYISATTAKFHVSNIMRKLEVSRRAEAVY 204 Query: 227 KAIRFGYI 234 A + G I Sbjct: 205 AASKRGLI 212 >gi|56479027|ref|YP_160616.1| nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1] gi|56315070|emb|CAI09715.1| Nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1] Length = 226 Score = 34.7 bits (78), Expect = 9.7, Method: Compositional matrix adjust. Identities = 21/67 (31%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S L+ RE L G +++EIA KL L+ TV ++ + KL+ +R+QA Sbjct: 155 ASELNKLSPREREILAFLARGQSNKEIARKLELAESTVKIHVQNVLRKLNLTSRVQAAVF 214 Query: 228 AIRFGYI 234 A+ G + Sbjct: 215 AVEQGIV 221 >gi|329941298|ref|ZP_08290577.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299829|gb|EGG43728.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 212 Score = 34.7 bits (78), Expect = 9.8, Method: Compositional matrix adjust. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+++ + T +IA + LS TV YL A K A NR +A +A R G+ Sbjct: 152 LTLREGDILRVSRECTTVADIAATVSLSPGTVRNYLSRAIGKTGARNRHEAAEEAERRGW 211 Query: 234 I 234 I Sbjct: 212 I 212 >gi|315654553|ref|ZP_07907459.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] gi|315491017|gb|EFU80636.1| conserved hypothetical protein [Mobiluncus curtisii ATCC 51333] Length = 209 Score = 34.7 bits (78), Expect = 9.8, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 8/69 (11%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK--- 227 A L +RE L+L GY +EIA+K+ LS +T+ +Y+ +L A + ++A+ Sbjct: 136 ANELNQREMQVLRLVCAGYARKEIAKKMYLSENTIKSYI----TQLLAKSGFSSVARLAL 191 Query: 228 -AIRFGYIC 235 A+ GYI Sbjct: 192 WAVSSGYIV 200 >gi|238751158|ref|ZP_04612653.1| HTH-type transcriptional regulator malT [Yersinia rohdei ATCC 43380] gi|238710636|gb|EEQ02859.1| HTH-type transcriptional regulator malT [Yersinia rohdei ATCC 43380] Length = 903 Score = 34.7 bits (78), Expect = 9.8, Method: Compositional matrix adjust. Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 4/65 (6%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF-- 231 LT+RE L L GY++++IA +L ++ T+ ++ + KL +R +A+ +A R Sbjct: 839 LTQREWQVLGLIYSGYSNDQIAGELDVAATTIKTHIRNLYQKLGVGHRQEAVQQAQRLLQ 898 Query: 232 --GYI 234 GY+ Sbjct: 899 MMGYV 903 >gi|167829868|ref|ZP_02461339.1| transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] Length = 89 Score = 34.7 bits (78), Expect = 9.8, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L+L G +++EIA + + TV +L + KLDA +R A+ +A+ G Sbjct: 25 LTPKEREILELLGRNLSNKEIALAMTVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 84 Query: 234 I 234 + Sbjct: 85 L 85 >gi|29828574|ref|NP_823208.1| LuxR family transcriptional regulator [Streptomyces avermitilis MA-4680] gi|29605678|dbj|BAC69743.1| putative LuxR-family transcriptional regulator [Streptomyces avermitilis MA-4680] Length = 279 Score = 34.7 bits (78), Expect = 9.8, Method: Compositional matrix adjust. Identities = 25/62 (40%), Positives = 31/62 (50%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L RE L G T+ AE+LGL TV YL SA KL A R++A+ A R G Sbjct: 217 GLAPREVDVLVCVAAGATNAVAAERLGLRPETVKGYLRSAMRKLGAHTRLEAVVAARRAG 276 Query: 233 YI 234 + Sbjct: 277 VL 278 >gi|99080801|ref|YP_612955.1| two component LuxR family transcriptional regulator [Ruegeria sp. TM1040] gi|99037081|gb|ABF63693.1| two component transcriptional regulator, LuxR family [Ruegeria sp. TM1040] Length = 214 Score = 34.7 bits (78), Expect = 9.8, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 9/108 (8%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQL 184 G++ T L N V + G Y + EL ++ +SA + L+ RE L Sbjct: 109 GFIPKTMGAQSLLNAVRFMSAGEIYVPV----ELMREEASAPEHPLLAQLSPREVEVLSG 164 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G +++EIA L L T+ ++ + KLDA NR QA A G Sbjct: 165 LCRGQSNKEIARDLNLQEVTIKLHVRTLCRKLDAKNRTQAAMTAKEAG 212 >gi|327393905|dbj|BAK11327.1| HTH-type transcriptional regulator MalT [Pantoea ananatis AJ13355] Length = 912 Score = 34.7 bits (78), Expect = 9.9, Method: Compositional matrix adjust. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE L L GY++E+IA +L ++ T+ ++ + KL +R +A+ +A Sbjct: 848 LTQREWQVLGLIYSGYSNEQIAAELDVASTTIKTHIRNLYQKLGITHRAEAMTQA 902 >gi|254424512|ref|ZP_05038230.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192001|gb|EDX86965.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 211 Score = 34.7 bits (78), Expect = 9.9, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 2/103 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GY++ + LA V HG Y I + L ++ + +LT+RE L +G Sbjct: 105 GYLLKDTTAEDLATAVRQVHHGKRYIPIEVGIRLTERIQES--DLTDRELEVLGELTEGK 162 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ EIA+ L +S TV ++ + K +R QA+ A+R G Sbjct: 163 SNLEIAKALSISEGTVKFHINNILSKFGVSDRTQAVITALRRG 205 >gi|149187707|ref|ZP_01866004.1| DNA-binding response regulator, LuxR family protein [Vibrio shilonii AK1] gi|148838587|gb|EDL55527.1| DNA-binding response regulator, LuxR family protein [Vibrio shilonii AK1] Length = 249 Score = 34.7 bits (78), Expect = 9.9, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 33/59 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++++ + L L GYT+++ AEKL LS T+ ++ LD N + + A+R G Sbjct: 183 LSKKQCTVLTLLAQGYTAKQCAEKLFLSPRTIESHKYRMLDILDLDNHTELVQFALRNG 241 >gi|15802770|ref|NP_288797.1| transcriptional regulator RcsB [Escherichia coli O157:H7 EDL933] gi|25298778|pir||D85861 hypothetical protein rcsB [imported] - Escherichia coli (strain O157:H7, substrain EDL933) gi|12516552|gb|AAG57352.1|AE005453_9 positive response regulator for colanic capsule biosynthesis, (sensor, RcsC) [Escherichia coli O157:H7 str. EDL933] Length = 216 Score = 34.7 bits (78), Expect = 9.9, Method: Compositional matrix adjust. Identities = 19/64 (29%), Positives = 34/64 (53%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 ++ LE + L+ +E+ L+L +G+ EIA+KL S+ T+++ SA +KL Sbjct: 134 VSRLLEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKL 193 Query: 217 DAVN 220 N Sbjct: 194 GVEN 197 >gi|330830188|ref|YP_004393140.1| GacA-like protein [Aeromonas veronii B565] gi|328805324|gb|AEB50523.1| GacA-like protein [Aeromonas veronii B565] Length = 214 Score = 34.7 bits (78), Expect = 10.0, Method: Compositional matrix adjust. Identities = 20/63 (31%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L+ERE + + G +I+E+L LS TVN+Y KL ++ AIR+ Sbjct: 147 KSLSERELQIMMMITKGQKVTDISEQLNLSPKTVNSYRYRLFSKLGINGDVELTHLAIRY 206 Query: 232 GYI 234 G + Sbjct: 207 GML 209 >gi|239816808|ref|YP_002945718.1| LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239803385|gb|ACS20452.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 161 Score = 34.7 bits (78), Expect = 10.0, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 28/60 (46%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + G T EIA L +S TV+ +L VKL R A+ +A+ G Sbjct: 99 GLTPREGDVMHWLSRGKTDAEIAALLEISPRTVHKHLEHVYVKLGVETRTAAVVRALAMG 158 >gi|167587172|ref|ZP_02379560.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family protein [Burkholderia ubonensis Bu] Length = 83 Score = 34.7 bits (78), Expect = 10.0, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E + L+L +++EIA L + TV +L + KLDA +R A+ +A+ G Sbjct: 19 LTPKERAILELLARNLSNKEIAVALAVGEETVKWHLKNLFGKLDASSRKHAVRRALVLGL 78 Query: 234 I 234 + Sbjct: 79 L 79 >gi|87309032|ref|ZP_01091170.1| two-component system response regulator-like protein (Nar family protein) [Blastopirellula marina DSM 3645] gi|87288375|gb|EAQ80271.1| two-component system response regulator-like protein (Nar family protein) [Blastopirellula marina DSM 3645] Length = 229 Score = 34.7 bits (78), Expect = 10.0, Method: Compositional matrix adjust. Identities = 19/41 (46%), Positives = 25/41 (60%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 SS LT+RE +L G G S EIAE+L LS +T++ Y Sbjct: 151 SSTLGALTDRELEIFELIGLGMASREIAERLHLSGNTIDTY 191 Searching..................................................done Results from round 2 >gi|254780693|ref|YP_003065106.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040370|gb|ACT57166.1| transcriptional regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 235 Score = 336 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 235/235 (100%), Positives = 235/235 (100%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD Sbjct: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF Sbjct: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS Sbjct: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC Sbjct: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 >gi|315121858|ref|YP_004062347.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495260|gb|ADR51859.1| transcriptional regulator protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 235 Score = 317 bits (813), Expect = 7e-85, Method: Composition-based stats. Identities = 199/235 (84%), Positives = 217/235 (92%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 MSENTL KKS SL ELS +L +IQ RIKARNFALYTIN ALD PRRQQL+CEL+NYD + Sbjct: 1 MSENTLLEKKSFSLLELSSKLKIIQKRIKARNFALYTINCALDSPRRQQLVCELNNYDPE 60 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 SG+IPNILI+TYGD+FLFHFNSGLLPIIW ++QEET+IESSGQ +RL+ G+LPFAGIAF Sbjct: 61 SGEIPNILIKTYGDEFLFHFNSGLLPIIWNNMQEETIIESSGQFFIRLDKGILPFAGIAF 120 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 P+RLGFHKNGYV+FT+E LMLANEVIIEAHGACYQVI FL LFKKRSSAARNLTERETS Sbjct: 121 PLRLGFHKNGYVVFTAECLMLANEVIIEAHGACYQVIMGFLALFKKRSSAARNLTERETS 180 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 CLQLAGDGYTSEEIA+KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC Sbjct: 181 CLQLAGDGYTSEEIAKKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 >gi|327193021|gb|EGE59933.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 306 Score = 264 bits (675), Expect = 7e-69, Method: Composition-based stats. Identities = 109/228 (47%), Positives = 149/228 (65%), Gaps = 3/228 (1%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + SS +L PRL +Q A+ FA+Y ++ + P +Q+L+CEL N+ + Sbjct: 80 RISSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GLPAKQRLVCELENWGPSNAGFGKAFT 138 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFH 127 + YGD L H LLP+ W + + RL G+LPF+G+AFPVRLG Sbjct: 139 DAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPFMTRLRDGILPFSGLAFPVRLGAV 198 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 NG+++FT + + ++++I+E HG C ++ D L L ++R++AA L+ERE +CLQLAGD Sbjct: 199 GNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQLAGD 258 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 259 GRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYIS 306 >gi|82940563|emb|CAJ44292.1| putative transcription regulator protein MotS, LuxR family [Rhizobium leguminosarum bv. viciae] Length = 248 Score = 262 bits (670), Expect = 3e-68, Method: Composition-based stats. Identities = 107/228 (46%), Positives = 151/228 (66%), Gaps = 3/228 (1%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + SS +L PRL +Q + A+ FA++ ++ + P +Q+L+CEL N+ + Sbjct: 22 RISSRSDLFPRLIAMQKLVDAQGFAIFRVSGS-GLPAKQRLVCELENWGPSNAGFGKAFT 80 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFH 127 + YGD L H + LLP+ W + + RL+ G+LPF+G+AFPVRLG Sbjct: 81 DAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFAPFMTRLQDGILPFSGLAFPVRLGAV 140 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 NG+++FT + + +++ I+E HG C ++ D L L ++R++AA L+ERE +CLQLAGD Sbjct: 141 GNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQLAGD 200 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 201 GRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYIS 248 >gi|262283888|gb|ACY40752.1| VisR [Rhizobium leguminosarum bv. viciae] Length = 248 Score = 262 bits (669), Expect = 4e-68, Method: Composition-based stats. Identities = 108/233 (46%), Positives = 152/233 (65%), Gaps = 3/233 (1%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 T+ + SS +L PRL +Q A+ FA++ ++ + P +Q+L+CEL N+ + Sbjct: 17 TVRVNRISSRSDLFPRLIAMQKLADAQGFAIFRVSGS-GLPAKQRLVCELENWGSSNAGF 75 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPV 122 + YGD L H + LLP+ W + + RL+ G+LPF+G+AFPV Sbjct: 76 GKAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFSPFMTRLQDGILPFSGLAFPV 135 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 RLG NG+++FT + + +++ I+E HG C ++ D L L ++R++AA L+ERE +CL Sbjct: 136 RLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACL 195 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 QLAGDG SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 196 QLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYIS 248 >gi|116250469|ref|YP_766307.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255117|emb|CAK06191.1| regulator of flagellar and motility genes, also regulates rem [Rhizobium leguminosarum bv. viciae 3841] Length = 248 Score = 261 bits (667), Expect = 6e-68, Method: Composition-based stats. Identities = 108/233 (46%), Positives = 153/233 (65%), Gaps = 3/233 (1%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 T+ + SS +L PRL +Q +A+ FA++ ++ + P +Q+L+CEL N+ + Sbjct: 17 TVRVNRISSRSDLFPRLIAMQKLAEAQGFAIFRVSGS-GLPAKQRLVCELENWGSSNAGF 75 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPV 122 + YGD L H + LLP+ W + + RL+ G+LPF+G+AFPV Sbjct: 76 GKAFTDAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFSPFMTRLQDGILPFSGLAFPV 135 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 RLG NG+++FT + + +++ I+E HG C ++ D L L ++R++AA L+ERE +CL Sbjct: 136 RLGAVGNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACL 195 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 QLAGDG SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 196 QLAGDGRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYIS 248 >gi|86356299|ref|YP_468191.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280401|gb|ABC89464.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 248 Score = 261 bits (666), Expect = 7e-68, Method: Composition-based stats. Identities = 112/228 (49%), Positives = 150/228 (65%), Gaps = 3/228 (1%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + SS +L PRL +Q A+ FA+Y ++ + P +Q+L+CEL N+ L + Sbjct: 22 RISSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GMPAKQRLVCELENWGLSNVGFGKAFT 80 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFH 127 + YGD L H LLP+ W + + RL+ G+LPF+G+AFPVRLG Sbjct: 81 DAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFSPFMTRLKDGILPFSGLAFPVRLGAV 140 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 NG+++FT + + +++ I+E HG C V+ D L L ++RS+AA L+ERE +CLQLAGD Sbjct: 141 GNGFILFTGDDIDPSSDTIVELHGRCCHVMMDLLSLDERRSAAAEALSEREIACLQLAGD 200 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 201 GRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYIS 248 >gi|241203093|ref|YP_002974189.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856983|gb|ACS54650.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 248 Score = 261 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 107/228 (46%), Positives = 150/228 (65%), Gaps = 3/228 (1%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + SS +L PRL +Q A+ FA++ ++ + P +Q+L+CEL N+ + Sbjct: 22 RISSRSDLFPRLIAMQKLADAQGFAIFRVSGS-GIPAKQRLVCELENWGSSNAGFGKAFT 80 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFH 127 + YGD L H + LLP+ W + + RL+ G+LPF+G+AFPVRLG Sbjct: 81 DAYGDILLDHIDKSLLPLSWAGGYDRAAPGPADFSPFMTRLQDGILPFSGLAFPVRLGAV 140 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 NG+++FT + + +++ I+E HG C ++ D L L ++R++AA L+ERE +CLQLAGD Sbjct: 141 GNGFILFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQLAGD 200 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 201 GRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYIS 248 >gi|190890350|ref|YP_001976892.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695629|gb|ACE89714.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 248 Score = 261 bits (666), Expect = 8e-68, Method: Composition-based stats. Identities = 109/228 (47%), Positives = 149/228 (65%), Gaps = 3/228 (1%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + SS +L PRL +Q A+ FA+Y ++ + P +Q+L+CEL N+ + Sbjct: 22 RISSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GLPAKQRLVCELENWGSSNAGFGKAFT 80 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFH 127 + YGD L H LLP+ W + + RL G+LPF+G+AFPVRLG Sbjct: 81 DAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPFMTRLRDGILPFSGLAFPVRLGAV 140 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 NG+++FT + + ++++I+E HG C ++ D L L ++R++AA L+ERE +CLQLAGD Sbjct: 141 GNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQLAGD 200 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 201 GRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYIS 248 >gi|218514696|ref|ZP_03511536.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 240 Score = 260 bits (665), Expect = 9e-68, Method: Composition-based stats. Identities = 109/228 (47%), Positives = 149/228 (65%), Gaps = 3/228 (1%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + SS +L PRL +Q A+ FA+Y ++ + P +Q+L+CEL N+ + Sbjct: 14 RISSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GLPAKQRLVCELENWGSSNAGFGKAFT 72 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFH 127 + YGD L H LLP+ W + + RL G+LPF+G+AFPVRLG Sbjct: 73 DAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPFMTRLRDGILPFSGLAFPVRLGAV 132 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 NG+++FT + + ++++I+E HG C ++ D L L ++R++AA L+ERE +CLQLAGD Sbjct: 133 GNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQLAGD 192 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 193 GRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYIS 240 >gi|209547915|ref|YP_002279832.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533671|gb|ACI53606.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 248 Score = 256 bits (654), Expect = 2e-66, Method: Composition-based stats. Identities = 106/228 (46%), Positives = 148/228 (64%), Gaps = 3/228 (1%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + SS +L PRL +Q A FA++ ++ + P +Q+L+CEL N+ + Sbjct: 22 RISSRSDLFPRLIAMQKLADAHGFAIFRVSGS-GIPAKQRLVCELENWGSSNAGFGKAFT 80 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFH 127 + YGD L H LLP+ W + + RL+ G++PF+G+AFPVRLG Sbjct: 81 DAYGDALLEHIEKSLLPLSWAGGCDRAAPGPADFAPFMTRLQDGIVPFSGLAFPVRLGAV 140 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 NG+++FT + + +++ I+E HG C ++ D L L ++R++AA L+ERE +CLQLAGD Sbjct: 141 GNGFIVFTGDEIDPSSDTIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQLAGD 200 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G SEEIA+KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 201 GRISEEIADKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYIS 248 >gi|222084852|ref|YP_002543381.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722300|gb|ACM25456.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 248 Score = 250 bits (639), Expect = 9e-65, Method: Composition-based stats. Identities = 119/239 (49%), Positives = 163/239 (68%), Gaps = 5/239 (2%) Query: 1 MSENTLTGK--KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYD 58 MS T + + S +L P+L +Q I A+NFALY ++ + P +Q+L+CEL N+ Sbjct: 11 MSGETKLSRLHRISGRSDLFPKLVSMQKLIDAQNFALYRLSGS-GLPSKQRLVCELENWG 69 Query: 59 LDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFA 116 + + +E YG+ + H LLP++W ++ E+ + RL+ LLPFA Sbjct: 70 SANPVMNKAFVEAYGEAMIEHIEKSLLPLMWNGRDSDSTAETPDFAAFTQRLKPHLLPFA 129 Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 G+AFPVRLG NGYV+FT++F+ +A+++I+E HG Q++ + L L ++RS AA L+E Sbjct: 130 GVAFPVRLGSVGNGYVVFTAKFMDVASDMIVELHGRSCQIMMELLSLDERRSPAAEALSE 189 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE +CLQLAGDG SEEIAEKLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIRFGYI Sbjct: 190 REIACLQLAGDGRISEEIAEKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRFGYIS 248 >gi|150395471|ref|YP_001325938.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150026986|gb|ABR59103.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 247 Score = 239 bits (609), Expect = 3e-61, Method: Composition-based stats. Identities = 110/228 (48%), Positives = 147/228 (64%), Gaps = 3/228 (1%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +++ L RL +Q +I ARNFA+ N P ++L C LHN+ +I LI Sbjct: 21 RAAQAAGLVTRLQAMQRQINARNFAVLRTN-GRGLPAARKLTCVLHNWGTSCEEIARDLI 79 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFH 127 + YG++ L H + LLP++W E E+S G + RL+ LP++GIA P+RLG Sbjct: 80 DHYGEELLQHLDHSLLPVLWDGKGEHQTAETSDFGPFTRRLKDRKLPYSGIALPIRLGAQ 139 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 NGYV+F ++ + E I+E HG Q++TD L +KR A L++RE SCLQ+AGD Sbjct: 140 GNGYVVFAGSYIDASGEQIVELHGRSAQIMTDLLTFDEKRPLKAEALSDREISCLQMAGD 199 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G+ SEEIAEK+GLSVHTVNAYLG+AT KLD+VNRIQAIAKAIR GYI Sbjct: 200 GHISEEIAEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAIRLGYIS 247 >gi|222149994|ref|YP_002550951.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736976|gb|ACM37939.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 251 Score = 236 bits (601), Expect = 2e-60, Method: Composition-based stats. Identities = 108/238 (45%), Positives = 150/238 (63%), Gaps = 6/238 (2%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 S L + +++ ++ PRL +Q I AR+FA++ + + PR++ L CE ++ Sbjct: 14 SAADLKARLAANRGDIFPRLIAMQKAINARSFAVFRVAGS-GLPRKRMLQCECESWAASG 72 Query: 62 --GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAG 117 G + + YGD L H + LLP++W + T SS G RL G LPF+G Sbjct: 73 MVGSYSDAFVSCYGDLLLSHIDDLLLPLMWNAKDNATFCISSEFGAFVSRLPAGNLPFSG 132 Query: 118 IAFPVRLGFHKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 +AFPVRLG NGYVIF + L ++V+I+ H +++ D L L +++ + + L++ Sbjct: 133 VAFPVRLGAVGNGYVIFALNGSEDLDSDVMIDMHNRSCKLMMDILSLSERKVAPSEALSD 192 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +CLQLAGDG SEEIAE LGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 193 REIACLQLAGDGRISEEIAENLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 250 >gi|325291914|ref|YP_004277778.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325059767|gb|ADY63458.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 248 Score = 233 bits (595), Expect = 1e-59, Method: Composition-based stats. Identities = 109/226 (48%), Positives = 148/226 (65%), Gaps = 3/226 (1%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +S +L P+L +Q + ARNF + T +A FP +++L CEL N+ +++ + I Sbjct: 23 VTSRSDLFPKLVAMQKLVGARNFVV-TKAAASGFPNKKKLTCELENWGMNAAEQSAQFIR 81 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEE--TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 GD L H + LLP+IW++ + L R+E LP+AG+A PVRLG Sbjct: 82 AVGDILLDHIETSLLPVIWRNKNAGGFADLPDVPALMRRIENDTLPYAGLALPVRLGTIG 141 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 NGY++F L+L NEV+IE H C +++ D L L +++ + + L+ERE +CLQLAGDG Sbjct: 142 NGYIVFCGSNLVLDNEVVIEQHIKCCEIMVDMLALDERKVAPSEALSEREIACLQLAGDG 201 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SEEIA KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 202 RISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 247 >gi|15887874|ref|NP_353555.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15155462|gb|AAK86340.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 251 Score = 230 bits (587), Expect = 1e-58, Method: Composition-based stats. Identities = 108/226 (47%), Positives = 148/226 (65%), Gaps = 3/226 (1%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +S +L P+L +Q + ARNF + T +A FP ++++ CEL N+ +++ + I Sbjct: 26 VTSRSDLFPKLVAMQKLVGARNFVV-TKAAASGFPNKKKMTCELENWGMNAAEQSAQFIR 84 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEE--TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 GD L H + LLP+IW++ + L R+E LP+AG+A PVRLG Sbjct: 85 AVGDILLDHIETSLLPVIWRNKNAGGFADLPDVPALLRRIENDTLPYAGLALPVRLGTIG 144 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 NGY++F L+L NEV+IE H C +++ D L L +++ + + L+ERE +CLQLAGDG Sbjct: 145 NGYIVFCGTNLILDNEVVIEQHIKCCEIMVDMLALDERKVAPSEALSEREIACLQLAGDG 204 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SEEIA KLGLSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 205 RISEEIAVKLGLSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYI 250 >gi|227820844|ref|YP_002824814.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339843|gb|ACP24061.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 246 Score = 228 bits (582), Expect = 4e-58, Method: Composition-based stats. Identities = 101/221 (45%), Positives = 141/221 (63%), Gaps = 3/221 (1%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L RL +Q ++ A+NFA+ +N P ++L C LHN+ S + L++ YG++ Sbjct: 27 LVTRLQAMQRQVNAKNFAVLRVN-GRGMPATRKLTCVLHNWGAASETNAHELLKVYGEEL 85 Query: 77 LFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L H + L ++W E ++ S RL+G L ++GIAFP+RLG NGYV+F Sbjct: 86 LQHLDRSPLAVLWDGQGEHQAADAPDMALFSNRLKGRKLSYSGIAFPIRLGAQGNGYVVF 145 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ E +++ HG C QV+ D L ++R +L++RE +CLQ+AGDGY SEEI Sbjct: 146 AGSYIDAPAEQVLDLHGRCAQVMADMLAADERRLFKGESLSDREIACLQMAGDGYISEEI 205 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 AEK+GLSVHTVNAYLG+AT KLD+VNRIQAIAKAIR GYI Sbjct: 206 AEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAIRLGYIS 246 >gi|15964401|ref|NP_384754.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307311543|ref|ZP_07591184.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318898|ref|ZP_07598329.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|3894103|emb|CAA11949.1| unnamed protein product [Sinorhizobium meliloti] gi|15073578|emb|CAC45220.1| Regulator of flagellar operons, LuxR family, probable forming a heterodimer with VisN [Sinorhizobium meliloti 1021] gi|306895312|gb|EFN26067.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306899560|gb|EFN30189.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 246 Score = 218 bits (556), Expect = 4e-55, Method: Composition-based stats. Identities = 107/221 (48%), Positives = 139/221 (62%), Gaps = 3/221 (1%) Query: 17 LSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 L RL +Q +I A+NFA+ N P ++L C LHN+ + LI YGD+ Sbjct: 27 LVTRLQAMQRQINAKNFAVLRTN-GRGLPATRKLTCVLHNWGASCEENARDLIMLYGDEL 85 Query: 77 LFHFNSGLLPIIWQSIQEETVIE--SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L H + LLP++W E E G + RL LP++GIAFP+RLG NGYV+F Sbjct: 86 LQHLDLSLLPVLWNGQGEHQTAEVSDFGPFTRRLRERKLPYSGIAFPIRLGAQGNGYVMF 145 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 ++ + E I+E HG Q++ D L +KR A L++RE +CLQ+AGDG+ SEEI Sbjct: 146 AGSYIDASGEQIVELHGRSAQIMADLLAADEKRLFKAEALSDREIACLQMAGDGHISEEI 205 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 AEK+GLSVHTVNAYLG+AT KLD+VNRIQAIAKAIR GYI Sbjct: 206 AEKMGLSVHTVNAYLGAATTKLDSVNRIQAIAKAIRLGYIS 246 >gi|218509884|ref|ZP_03507762.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli Brasil 5] Length = 373 Score = 196 bits (498), Expect = 2e-48, Method: Composition-based stats. Identities = 74/190 (38%), Positives = 112/190 (58%), Gaps = 3/190 (1%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + SS +L PRL +Q A+ FA+Y ++ + P +Q+L+CEL N+ + Sbjct: 14 RISSRSDLFPRLIAMQKLADAQGFAIYRVSGS-GLPAKQRLVCELENWGSSNAGFGKAFT 72 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESS--GQLSVRLEGGLLPFAGIAFPVRLGFH 127 + YGD L H LLP+ W + + RL G+LPF+G+AFPVRLG Sbjct: 73 DAYGDILLDHIEKSLLPLSWAGAHDRAAPGPADFAPFMTRLRDGILPFSGLAFPVRLGAV 132 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 NG+++FT + + ++++I+E HG C ++ D L L ++R++AA L+ERE +CLQLAGD Sbjct: 133 GNGFILFTGDDIDPSSDMIVELHGRCCHIMMDLLSLDERRTAAAEALSEREIACLQLAGD 192 Query: 188 GYTSEEIAEK 197 G SEEIA K Sbjct: 193 GRISEEIARK 202 >gi|163758001|ref|ZP_02165089.1| putative LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284290|gb|EDQ34573.1| putative LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 253 Score = 179 bits (454), Expect = 3e-43, Method: Composition-based stats. Identities = 81/230 (35%), Positives = 116/230 (50%), Gaps = 16/230 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD-----IP 65 + S +L P+L +Q + A FA+ + R+Q + N D+ + Sbjct: 35 AGSTADLFPKLVAMQRQCAAAGFAVMS--------AREQTLLAAGNLDITMKSPGCDAMA 86 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 L+++ L H +S PI++ + + ++ E G + FPV LG Sbjct: 87 GPLLKSQMGFLLRHLDSSPRPILYAANSDAVPSPPPALPLMQTEEG---RTDLLFPVSLG 143 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 NGY+ F + +E++I+ H ++ + L L + A L ERE CLQL Sbjct: 144 AMGNGYIGFFGVDGAIDSELLIDLHRKSLAMMRETLRLAFGAAPVADKLNEREIECLQLV 203 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G+G SE I E+L LSVHTVNAYLGSAT KLDAVNRIQAIAK+IR G I Sbjct: 204 GNGMKSEAIGERLNLSVHTVNAYLGSATTKLDAVNRIQAIAKSIRLGIIA 253 >gi|13472562|ref|NP_104129.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14023308|dbj|BAB49915.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 256 Score = 176 bits (446), Expect = 2e-42, Method: Composition-based stats. Identities = 71/227 (31%), Positives = 106/227 (46%), Gaps = 17/227 (7%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY--- 72 + R I I A F LY ++ + P R +L+ + D P I + T Sbjct: 38 DAVRRCRWISVDINASAFGLYFVSPS---PERARLVPCFDS------DYPGIAVATKFIA 88 Query: 73 ---GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG--LLPFAGIAFPVRLGFH 127 G++ + H ++ P W + E G L+ + +GIAFPV Sbjct: 89 GANGEEIVRHTHNSTEPRWWTDDGLAAMAEMFGNLAWTAQLSPLAPGTSGIAFPVHADRG 148 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + G V+F + L + + E H C+ + + + R +++RE CL+L + Sbjct: 149 QCGLVVFLGSKMALPQDALYEIHARCFSLFAAVARIRPSDAGRMRAISKRELECLKLTAN 208 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TSEEIA L LSVHT N YL +T KL+AVNR QA+AKA+R G I Sbjct: 209 GNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255 >gi|319781695|ref|YP_004141171.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167583|gb|ADV11121.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 256 Score = 175 bits (444), Expect = 4e-42, Method: Composition-based stats. Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 17/227 (7%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY--- 72 + R I + A F L+ ++ + P R +L+ + D P I + T Sbjct: 38 DAVRRCRWIAVDMNASAFGLFFVSPS---PERARLVPCFDS------DYPGIAVATKFIS 88 Query: 73 ---GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV--RLEGGLLPFAGIAFPVRLGFH 127 G++ + H P W E G + R+ + +GIAFPV Sbjct: 89 GANGEEIVRHTRISTEPRWWTDDGVPATAELFGDFAWTERMAALVPGTSGIAFPVHADRG 148 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + G V+F + L + + E H C+ + + + R +++RE CL+L + Sbjct: 149 QCGLVVFLGSEMTLQQDALYEVHARCFSLFAAVARIRPGDAGRMRAISKRELECLKLTAN 208 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TSEEIA L LSVHT N YL +T KL+AVNR QA+AKA+R G I Sbjct: 209 GNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255 >gi|260466633|ref|ZP_05812821.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029639|gb|EEW30927.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 256 Score = 174 bits (442), Expect = 7e-42, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 17/227 (7%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY--- 72 + R I I A F L+ ++ + P R +L+ + D P + + T Sbjct: 38 DAVRRCRWISVDINASAFGLFFVSPS---PERARLVPCFDS------DYPGVAVATKFIS 88 Query: 73 ---GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG--LLPFAGIAFPVRLGFH 127 G++ + H + P W + E G+L+ + +GIA PV Sbjct: 89 AANGEEIVRHTRNSTEPRWWADDGVAAMAEMFGKLAWTEQMAPLAPGTSGIALPVHADRG 148 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + G V+F + L + + E H C+ + + + R +++RE CL+L + Sbjct: 149 QCGLVVFLGSEIALPQDTLYEIHARCFSLFAAVARILPSDAGRTRAISKRELECLKLTAN 208 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TSEEIA L LSVHT N YL +T KL+AVNR QA+AKA+R G I Sbjct: 209 GNTSEEIARLLKLSVHTANQYLTQSTQKLNAVNRNQAVAKALRLGLI 255 >gi|330811856|ref|YP_004356318.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379964|gb|AEA71314.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 237 Score = 170 bits (431), Expect = 1e-40, Method: Composition-based stats. Identities = 60/247 (24%), Positives = 93/247 (37%), Gaps = 32/247 (12%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L +K S ++L L+ N + F + L P + L+NY + Sbjct: 6 DLLLRKLSCEKDLQTAYRLVLNFFNNQGFEYCAFAAYLGSPDKHTSKVNLNNYPYGWDRL 65 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQL-----------SVRLEGG-- 111 D + H N LPI+W + +L SV E G Sbjct: 66 YEQNGYASNDPLVAHCNQSSLPILWDETVFAHAPKLWRELNRQGLKYGWTQSVHDEQGAH 125 Query: 112 --LLPFAGIAFPVRLGFH--KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 L A P+ + H GY IF S+ H + ++D L + K Sbjct: 126 CSLFSLARSHCPIDIEEHYANLGYAIFASQR----------LHALASKKLSDALAIQPKC 175 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +L+ RE L+ + +G T+ E+ L LS TVN ++ S KL+ N+I A+AK Sbjct: 176 -----HLSPREIEVLRWSAEGKTASEVGRILCLSERTVNFHVCSCMRKLNVSNKISAVAK 230 Query: 228 AIRFGYI 234 A + I Sbjct: 231 AAQIHVI 237 >gi|262196287|ref|YP_003267496.1| LuxR family transcriptional regulator [Haliangium ochraceum DSM 14365] gi|262079634|gb|ACY15603.1| transcriptional regulator, LuxR family [Haliangium ochraceum DSM 14365] Length = 254 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 55/228 (24%), Positives = 87/228 (38%), Gaps = 19/228 (8%) Query: 23 LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY-------GDD 75 ++Q+ + F + PR + NY L PN + Y D Sbjct: 30 ILQDTLATYGFDFFCFAI-YGAPRGAI---AIDNYHLLLNAYPNAWADRYYEKHYWYSDP 85 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF- 134 L H PI W ++Q + +S + +R +G+ VR + G + Sbjct: 86 VLAHCGRSPTPIDWTTVQNQPAQPASAEQVMREAHEHDLCSGVTVTVRDVSGRLGILSLA 145 Query: 135 -----TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGD 187 ++E I A ++ F R + L+ERE CL+ Sbjct: 146 TRDVYSAELRDRIRHAIPIAQFVLSHLVEKLEAHFHVRLEDLQRYKLSERERECLRWVAA 205 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G TS EI LG++ T +L +A KL AVNR A+A+A++ G I Sbjct: 206 GKTSWEIGHILGIAERTAIFHLNNAMKKLGAVNRSHAVARALQHGVIA 253 >gi|66277262|gb|AAY44562.1| LuxR-like protein [Aeromonas sp. SF6-7] Length = 260 Score = 165 bits (418), Expect = 4e-39, Method: Composition-based stats. Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 14/189 (7%) Query: 61 SGDIPNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D+ + + + LPI W + E G + V L Sbjct: 56 FNQCPDSWVQAYTDNHMLACDPVIPLARKQTLPIYWNRLDERARFLPEGTMDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + Sbjct: 116 GLRNGISFPLHGATGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRMVRFSLM 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LTERET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DSDPKDPLTERETECLFWASEGKTSSEIACILGITERTVNYHLNHVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYIC 235 K + G++ Sbjct: 236 KGVSTGHVA 244 >gi|59940069|gb|AAX12573.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 165 bits (417), Expect = 6e-39, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G + V L Sbjct: 56 FNQCPDSWVQAYTENNMLACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMSNYIFEAAIRVVRFSMM 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DSAGKDPLTERETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSTGLL 243 >gi|59940143|gb|AAX12610.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] Length = 260 Score = 164 bits (416), Expect = 7e-39, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G + V L Sbjct: 56 FNQCPDSWVQAYTENNMLACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMSNYIFEAAIRVVRFSMM 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DSAGKDPLTERETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSTGLL 243 >gi|330828294|ref|YP_004391246.1| LuxR-like protein [Aeromonas veronii B565] gi|328803430|gb|AEB48629.1| LuxR-like protein [Aeromonas veronii B565] Length = 268 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G + V L Sbjct: 64 FNQCPDSWVQAYTENNMLACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEF 123 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + Sbjct: 124 GLRNGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMSNYIFEAAIRVVRFSMM 183 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 184 DSAGKDPLTERETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 243 Query: 227 KAIRFGYI 234 K + G + Sbjct: 244 KGVSTGLL 251 >gi|330831695|ref|YP_004394647.1| LuxR family transcriptional regulator [Aeromonas veronii B565] gi|328806831|gb|AEB52030.1| Transcriptional regulator, LuxR family [Aeromonas veronii B565] Length = 258 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 10/233 (4%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 K++ ++ L++ F + + ++ + +N D + Sbjct: 15 KATKTSDIQ---QLLERFSHQMGFDYFRLLIIFPISMQKSHVALFNNCPTTWFDAYSENQ 71 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D ++ PI W + + + S+ + + L G++FP+ + Sbjct: 72 YLTQDPVVYLGLKQTQPIFWNKLDCDSPWLPSASRDVMNLAADFGVRNGVSFPLHTPQGE 131 Query: 129 NGYVIF---TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE---RETSCL 182 +G + F L E + + L+L K R + LTE RE CL Sbjct: 132 HGILSFITKDKSNSDLMFENVPLLSFCASYIFNSALQLIKSRPDMMKYLTELSDREKECL 191 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 A +G TS EIA LG+S TVN +L T K D+ NR QAIAK I G I Sbjct: 192 FWASEGKTSWEIATILGISERTVNFHLTQVTNKTDSKNRSQAIAKGITSGIIV 244 >gi|82703532|ref|YP_413098.1| LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82411597|gb|ABB75706.1| transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 244 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 96/234 (41%), Gaps = 22/234 (9%) Query: 13 SLQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLIC--ELHNYDLDSGDIPNILI 69 S++EL I + +F +N++L P R L C E D N Sbjct: 15 SVEELHSATTTIARAMGFEHFLYGVQVNTSLTRPYRFILSCYPEEWRKHYDKEGYAN--- 71 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG-GLLPFAGIAFPVRLGFHK 128 D + H +PIIW ++ + + + VR E +G +F V G + Sbjct: 72 ---FDPTVSHCARTSIPIIW----KKEIFKGRRETRVRNEAKDCGLVSGASFSVHGGRGE 124 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--------SSAARNLTERETS 180 + + + I A A Q++T +L +R NLTERE Sbjct: 125 AAMLSLATSRESREAQNDILATMAKAQLLTCYLHEAVQRIVLSKGPLPVKKANLTEREQE 184 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL A +G T EIA + +S TV +L +A KL VNR QAI++A+ G I Sbjct: 185 CLLWAAEGKTGWEIANIVKISERTVTFHLQNAIQKLGVVNRQQAISRALSMGLI 238 >gi|145301148|ref|YP_001143989.1| LuxR family transcriptional regulator [Aeromonas salmonicida subsp. salmonicida A449] gi|142853920|gb|ABO92241.1| transcriptional regulator, LuxR family [Aeromonas salmonicida subsp. salmonicida A449] Length = 260 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 58/233 (24%), Positives = 93/233 (39%), Gaps = 10/233 (4%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 K+ E+ +L + F + + ++ + +N + + Sbjct: 17 KAKKTSEIQQQL---ERFSHQMGFDYFRLLIIFPISMQKSHVALFNNCPTSWFEAYSERH 73 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D +F PI W + + + S+ + + L G++FP+ + Sbjct: 74 YLTQDPVVFLGLKQTQPIFWNKLDCDSPWLPSASREVMNLAADFGVRNGVSFPLHTPQGE 133 Query: 129 NGYVIFTS---EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE---RETSCL 182 +G + F S L E + + L+L K R ++LTE RE CL Sbjct: 134 HGILSFISKEKSNSDLMFENVPLLSFCASYIFNSALQLIKSRPDLMKHLTELSDREKECL 193 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 A +G TS EIA LG+S TVN +L T K D+ NR QAIAK+I G I Sbjct: 194 FWASEGKTSWEIATILGISERTVNFHLNQVTNKTDSKNRNQAIAKSISSGIIV 246 >gi|66277254|gb|AAY44558.1| LuxR-like protein [Aeromonas caviae] Length = 260 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E+ G + V L Sbjct: 56 FNQCPDSWVQAYTLNNMLACDPIIQLARRQTLPIYWNRLDEKARFLQEGSMDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ ++ ++ ++ ++ + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITRERASSDLMLESSPILSWMSNYIFEAAIRIVRQSMR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTERET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEPLTERETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|66277266|gb|AAY44564.1| LuxR-like protein [Aeromonas sp. ym1] Length = 260 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 14/189 (7%) Query: 61 SGDIPNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D+ + + + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTDNHMLACDPVIRLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMSNYIFEAAIRMVRFSLM 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR AIA Sbjct: 176 DNDPKDPLTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIA 235 Query: 227 KAIRFGYIC 235 K + G++ Sbjct: 236 KGVSTGHVA 244 >gi|66277256|gb|AAY44559.1| LuxR-like protein [Aeromonas caviae] Length = 260 Score = 162 bits (411), Expect = 3e-38, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E+ G + V L Sbjct: 56 FNQCPDSWVQAYTLNNMLACDPIIQLARRQTLPIYWNRLDEKARFLQEGSMDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ ++ ++ ++ ++ + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITRERASSDLMLESSPILSWMSNYIFEAAIRIVRQSMR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTERET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEPLTERETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940141|gb|AAX12609.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] Length = 260 Score = 162 bits (410), Expect = 3e-38, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G + V L Sbjct: 56 FNQCPDSWVQAYTENNMLACDPVIRLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMSNYIFEAAIRVVRFSMM 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S+ LTERET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DSAGKDPLTERETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KEVSTGLL 243 >gi|319785576|ref|YP_004145052.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171464|gb|ADV15002.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 243 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 92/236 (38%), Gaps = 16/236 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + +++ + RL I + T+ P QQ L D P Sbjct: 15 QHAATAAAVCERLLGITSDFGLTALMAGTV-PQPGTPAGQQKQHVL------LCDWPGEW 67 Query: 69 IETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 +E Y D + H P W + I+ S + G G+AFP Sbjct: 68 LERYVARNYVDHDPVVSHMKQLQAPFQWHEASQGIRIDKSSGEVMGDAGAFKLRDGLAFP 127 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERET 179 + + V E + L+ + + ++L + + LT RE Sbjct: 128 LITLDGQIVMVSLGGEAVELSAAEFGQVSLVSTYAVGRAMQLHTMANRTIDHIVLTPRER 187 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 CLQ A G + EI++ LG+S HT +L +A KL AVNR+QA+A+AIR GYI Sbjct: 188 ECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYIS 243 >gi|59940107|gb|AAX12592.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes] Length = 258 Score = 161 bits (408), Expect = 6e-38, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 61 SGDIPNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P ++TY D+ + + + LPI W + E G + V L Sbjct: 56 FNQCPISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 116 GLRNGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDS 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DQQAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 233 Query: 227 KAIRFGYI 234 K I G + Sbjct: 234 KGISSGIL 241 >gi|59940119|gb|AAX12598.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 258 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 61 SGDIPNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P ++TY D+ + + + LPI W + E G + V L Sbjct: 56 FNQCPISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 116 GLRNGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDS 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DQQAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 233 Query: 227 KAIRFGYI 234 K I G + Sbjct: 234 KGISSGIL 241 >gi|59940089|gb|AAX12583.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 161 bits (408), Expect = 7e-38, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEATIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|66736599|gb|AAY54303.1| quorum sensing trancriptional regulator [Aeromonas veronii] Length = 258 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 61 SGDIPNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P ++TY D+ + + + LPI W + E G + V L Sbjct: 56 FNQCPISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 116 GLRNGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDS 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DQQAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 233 Query: 227 KAIRFGYI 234 K I G + Sbjct: 234 KGISSGIL 241 >gi|59940109|gb|AAX12593.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-46] Length = 260 Score = 161 bits (407), Expect = 7e-38, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|66277278|gb|AAY44570.1| LuxR-like protein [Aeromonas sp. CCRC 13980] Length = 260 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|66277284|gb|AAY44573.1| LuxR-like protein [Aeromonas veronii bv. sobria] Length = 258 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 61 SGDIPNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P ++TY D+ + + + LPI W + E G + V L Sbjct: 56 FNQCPISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 116 GLRNGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDS 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DQQAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 233 Query: 227 KAIRFGYI 234 K I G + Sbjct: 234 KGISSGIL 241 >gi|66277280|gb|AAY44571.1| LuxR-like protein [Aeromonas caviae] Length = 258 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 61 SGDIPNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P ++TY D+ + + + LPI W + E G + V L Sbjct: 56 FNQCPISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 116 GLRNGISFPLHGAPGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDS 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DQQAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 233 Query: 227 KAIRFGYI 234 K I G + Sbjct: 234 KGISSGIL 241 >gi|66277274|gb|AAY44568.1| LuxR-like protein [Aeromonas sp. CCRC 13880] Length = 260 Score = 161 bits (407), Expect = 8e-38, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMCNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940065|gb|AAX12571.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 258 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 61 SGDIPNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P ++TY D+ + + + LPI W + E G + V L Sbjct: 56 FNQCPISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 116 GLRNGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDS 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DQQAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 233 Query: 227 KAIRFGYI 234 K I G + Sbjct: 234 KGISSGIL 241 >gi|59940151|gb|AAX12614.1| LuxR-type transcriptional regulator [Aeromonas sp. 11m] Length = 260 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940071|gb|AAX12574.1| LuxR-type transcriptional regulator [Aeromonas caviae] gi|59940073|gb|AAX12575.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] gi|59940077|gb|AAX12577.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes] gi|59940085|gb|AAX12581.1| LuxR-type transcriptional regulator [Aeromonas sp. AE-51] gi|59940087|gb|AAX12582.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940099|gb|AAX12588.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-24] gi|59940113|gb|AAX12595.1| LuxR-type transcriptional regulator [Aeromonas jandaei] Length = 260 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940045|gb|AAX12561.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] gi|59940125|gb|AAX12601.1| LuxR-type transcriptional regulator [Aeromonas salmonicida subsp. salmonicida] gi|59940159|gb|AAX12618.1| LuxR-type transcriptional regulator [Aeromonas sp. 17m] Length = 260 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940103|gb|AAX12590.1| LuxR-type transcriptional regulator [Aeromonas sp. AN-30] gi|59940105|gb|AAX12591.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 161 bits (407), Expect = 9e-38, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940157|gb|AAX12617.1| LuxR-type transcriptional regulator [Aeromonas sp. 15m] Length = 260 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940081|gb|AAX12579.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] gi|59940101|gb|AAX12589.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940163|gb|AAX12620.1| LuxR-type transcriptional regulator [Aeromonas sp. 26m] Length = 260 Score = 160 bits (406), Expect = 9e-38, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|66277258|gb|AAY44560.1| LuxR-like protein [Aeromonas veronii] Length = 258 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 61 SGDIPNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P ++TY D+ + + + LPI W + E G + V L Sbjct: 56 FNQCPISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 116 GLRNGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDS 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DQQAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 233 Query: 227 KAIRFGYI 234 K I G + Sbjct: 234 KGISSGIL 241 >gi|66277276|gb|AAY44569.1| LuxR-like protein [Aeromonas sp. CCRC 13881] Length = 260 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940133|gb|AAX12605.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940127|gb|AAX12602.1| LuxR-type transcriptional regulator [Aeromonas sp. Manipal A1] gi|59940139|gb|AAX12608.1| LuxR-type transcriptional regulator [Aeromonas caviae] gi|59940153|gb|AAX12615.1| LuxR-type transcriptional regulator [Aeromonas sp. 12m] gi|59940161|gb|AAX12619.1| LuxR-type transcriptional regulator [Aeromonas sp. 19m] Length = 260 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940091|gb|AAX12584.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940093|gb|AAX12585.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940095|gb|AAX12586.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|59940097|gb|AAX12587.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] gi|89027173|gb|ABD59317.1| AhyR [Aeromonas hydrophila] Length = 260 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|66277260|gb|AAY44561.1| LuxR-like protein [Aeromonas veronii] Length = 258 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 61 SGDIPNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P ++TY D+ + + + LPI W + E G + V L Sbjct: 56 FNQCPISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 116 GLRNGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDS 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DQQAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 233 Query: 227 KAIRFGYI 234 K I G + Sbjct: 234 KGISSGIL 241 >gi|166798330|gb|ABY89693.1| transcriptional regulator [Mesorhizobium loti] Length = 243 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 93/236 (39%), Gaps = 16/236 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + +++ + RL I T+ P QQ L D P Sbjct: 15 QHAATAAAVCERLLGITADFGLTALMAGTV-PQPGTPAGQQKQHVL------LCDWPGEW 67 Query: 69 IETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 +E Y D + H P W+ + I+ S + G G+AFP Sbjct: 68 LERYVARNYVDHDPVVSHMKQLQAPFQWREASQSIRIDKSSGEVMGDAGAFKLRDGLAFP 127 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERET 179 + + V E + L+ + + ++L S + + LT RE Sbjct: 128 LVTLDGQIVMVSLGGEAVELSAAEFGQVSLVSTYAVGRAMQLHTMASKSIDHIVLTPRER 187 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 CLQ A G + EI++ LG+S HT +L +A KL AVNR+QA+A+AIR GYI Sbjct: 188 ECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYIS 243 >gi|66277270|gb|AAY44566.1| LuxR-like protein [Aeromonas sp. ym3] Length = 260 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940047|gb|AAX12562.1| LuxR-type transcriptional regulator [Aeromonas jandaei] gi|59940057|gb|AAX12567.1| LuxR-type transcriptional regulator [Aeromonas enteropelogenes] gi|59940079|gb|AAX12578.1| LuxR-type transcriptional regulator [Aeromonas caviae] gi|59940147|gb|AAX12612.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 70363] Length = 260 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|145300631|ref|YP_001143472.1| transcriptional activator AsaR [Aeromonas salmonicida subsp. salmonicida A449] gi|61218504|sp|P0A3J5|AHYR_AERHY RecName: Full=Transcriptional activator protein AhyR/AsaR gi|61218505|sp|P0A3J6|AHYR_AERSA RecName: Full=Transcriptional activator protein AhyR/AsaR gi|899145|emb|CAA61654.1| AhyR [Aeromonas hydrophila] gi|1519237|gb|AAB70018.1| transcriptional activator [Aeromonas salmonicida] gi|142853403|gb|ABO91724.1| transcriptional activator AsaR [Aeromonas salmonicida subsp. salmonicida A449] Length = 260 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940111|gb|AAX12594.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. sobria] Length = 260 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940135|gb|AAX12606.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940049|gb|AAX12563.1| LuxR-type transcriptional regulator [Aeromonas veronii bv. veronii] Length = 260 Score = 160 bits (406), Expect = 1e-37, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNHVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940129|gb|AAX12603.1| LuxR-type transcriptional regulator [Aeromonas sp. ABJ] Length = 260 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSCGIL 243 >gi|59940033|gb|AAX12555.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|66277264|gb|AAY44563.1| LuxR-like protein [Aeromonas sp. SF8-170] Length = 260 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940117|gb|AAX12597.1| LuxR-type transcriptional regulator [Aeromonas media] Length = 260 Score = 160 bits (405), Expect = 1e-37, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + + LPI W + E+ G + V L Sbjct: 56 FNQCPDSWVQAYTVNNMLACDPIIQLARTQTLPIYWNRLDEKARFLQEGSMDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + Sbjct: 116 GLRNGISFPLHGATGENGILSFITRERASSDLLLESSPILSWMSNYIFEAAIRIVRQSMR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EEDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940149|gb|AAX12613.1| LuxR-type transcriptional regulator [Aeromonas sp. 1m] Length = 260 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDEPQEALTDRETECLVWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|306021776|gb|ADM80305.1| LuxR [Aeromonas sobria] Length = 237 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 55/188 (29%), Positives = 85/188 (45%), Gaps = 16/188 (8%) Query: 61 SGDIPNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P ++TY D+ + + + LPI W + E G + V L Sbjct: 38 FNQCPISWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERARFLQEGSMDVMGLAAEF 97 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + L Sbjct: 98 GLRNGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDS 157 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 158 DQQAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 215 Query: 227 KAIRFGYI 234 K I G + Sbjct: 216 KGISSGIL 223 >gi|88797814|ref|ZP_01113402.1| LuxR, transcriptional regulator [Reinekea sp. MED297] gi|88779491|gb|EAR10678.1| LuxR, transcriptional regulator [Reinekea sp. MED297] Length = 240 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 56/232 (24%), Positives = 88/232 (37%), Gaps = 9/232 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +++ S EL L I ++ F + AL I NY + + + Sbjct: 8 QQAQSTSELPEILESISQVVE---FDYFLFGLALPNSITHSDILMYDNYPGEWRRVYDES 64 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + S +P+ W I E S + AG + P+ + Sbjct: 65 GYAKRDPIVQYSISNYMPVTWAQISESPSYSRSDLKIMWEAEASGLKAGFSLPIHGAVGE 124 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTERETSCL 182 G + F S + Q++ ++ KR LT+RE CL Sbjct: 125 FGMISFASNHNTDEQRLKYAEAIPVIQMLVPAIQDAVKRLRVSESKEPPAKLTKREIECL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G +S EI++ LG S T +L +A KL A NR QAI+KA+ G I Sbjct: 185 TWATEGKSSWEISQILGCSERTAIFHLSNAANKLGATNRYQAISKALLCGII 236 >gi|66277268|gb|AAY44565.1| LuxR-like protein [Aeromonas sp. ym2] Length = 260 Score = 160 bits (404), Expect = 2e-37, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 82/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYGDDFLFHFN-------SGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D+ + + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTDNHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLL 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS +IA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQDALTDRETECLFWASEGKTSGDIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSRGIL 243 >gi|166850622|gb|ABY91283.1| transcriptional regulator [Mesorhizobium huakuii] Length = 243 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 91/236 (38%), Gaps = 16/236 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + + + +L I + T+ P QQ L D P Sbjct: 15 QHAGTAAAVCEKLLGITSDFGLTALMAGTV-PQPGTPSGQQKQHVL------LCDWPVEW 67 Query: 69 IETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 +E Y D + H P W+ + + S + G G+AFP Sbjct: 68 LERYVARNYVDHDPVVSHMKQLQAPFQWREAAQGISFDKSSDEVMGDAGAFKLRDGLAFP 127 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERET 179 + + V E + L+ + +++ +S + LT RE Sbjct: 128 LITLDGQIVMVSLGGEAVQLSGAEFGLVSLVSTYAVGRAMQIHTMATSTIDHIELTPRER 187 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 CLQ A G + EI++ LG+S HT +L +A KL AVNR+QA+A+AIR GYI Sbjct: 188 ECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYIS 243 >gi|59940145|gb|AAX12611.1| LuxR-type transcriptional regulator [Aeromonas sp. QM 21725] Length = 260 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 53/188 (28%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ +Q + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFQAAIRNVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDEPQGALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|260461917|ref|ZP_05810162.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259032164|gb|EEW33430.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 243 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 16/236 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + + + +L I + T+ P QQ L D P Sbjct: 15 QHAGTAAAVCEKLLGITSDFGLTALMAGTV-PQPGTPAGQQKQHVL------LCDWPVEW 67 Query: 69 IETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 +E Y D + H P W+ ++ I+ S + G G+AFP Sbjct: 68 LERYVARNYVDHDPVVSHMKQLQAPFQWREAAQDIRIDKSSGEVMGDAGAFKLRDGLAFP 127 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERET 179 + + V E + L+ + ++L + + LT RE Sbjct: 128 LITLDGQIVMVSLGGEAVELSAAEFGLVSLVSTYAVGRAMQLHTMSGNTIDHVELTPRER 187 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 CLQ A G + EI++ LG+S HT +L +A KL AVNR+QA+A+AIR GYI Sbjct: 188 ECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYIS 243 >gi|13474692|ref|NP_106261.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14025447|dbj|BAB52047.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 243 Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 90/236 (38%), Gaps = 16/236 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + + + +L I + T+ P QQ L D P Sbjct: 15 QHAGTAAAVCEKLLGITSDFGLTALMAGTV-PQPGTPSEQQKQHVL------LCDWPVEW 67 Query: 69 IETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 +E Y D + H P W+ + + S + G G+AFP Sbjct: 68 LERYVARNYVDHDPVVSHMKQLQAPFQWREAAQGISFDKSSGEVMGDAGAFKLRDGLAFP 127 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERET 179 + + V E + L+ + ++L + + LT RE Sbjct: 128 LITLDGQIVMVSLGGEAMQLSAAEFGLVSLVSTYAVGRAMQLHTMATKTIDHIELTPRER 187 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 CLQ A G + EI++ LG+S HT +L +A KL AVNR+QA+A+AIR GYI Sbjct: 188 ECLQWAAVGKSEWEISQILGISEHTSEKHLLNAKSKLGAVNRVQAVAEAIRRGYIS 243 >gi|66277272|gb|AAY44567.1| LuxR-like protein [Aeromonas sp. ym4] Length = 260 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGTLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLL 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQDALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940039|gb|AAX12558.1| LuxR-type transcriptional regulator [Aeromonas media] Length = 260 Score = 159 bits (402), Expect = 3e-37, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 89/217 (41%), Gaps = 21/217 (9%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-------DDFLFHFNSGL 84 + Y L +++ + P+ ++ Y D + + Sbjct: 34 GYDYYRFALILPTSMQRRKVVLF-------NQCPDSWVQAYTVNNMLACDPIIQLARTQT 86 Query: 85 LPIIWQSIQEETVIESSGQLSVR-LEGGLLPFAGIAFPVRLGFHKNGYVIF------TSE 137 LPI W + E+ G + V L GI+FP+ +NG + F +S+ Sbjct: 87 LPIYWNRLDEKARFLQEGSMDVMGLAAEFGLRNGISFPLHGAAGENGILSFITRERASSD 146 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L+ ++ ++ ++ + + LTERET CL A DG TS EIA Sbjct: 147 LLLESSPILSWMSNYIFEAAIRIVRQSMREDDPQEALTERETECLFWASDGKTSGEIACI 206 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 207 LGITERTVNYHLNQVTRKTGSMNRYQAIAKRVSSGIL 243 >gi|59940035|gb|AAX12556.1| LuxR-type transcriptional regulator [Aeromonas caviae] Length = 260 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 90/226 (39%), Gaps = 21/226 (9%) Query: 23 LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-------DD 75 LI + Y + +++ + P+ ++ Y D Sbjct: 25 LISRFTLGMGYDYYRFAVIIPMSMQRRKVVLF-------NQCPDSWVQAYTANHMLACDP 77 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + LPI W ++ G L V L GI+FP+ +NG + F Sbjct: 78 IIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENGILSF 137 Query: 135 ------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +S+ L+ ++ ++ ++ + + + LT+RET CL A +G Sbjct: 138 ITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEG 197 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EIA LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 198 KTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940063|gb|AAX12570.1| LuxR-type transcriptional regulator [Aeromonas popoffii] Length = 260 Score = 158 bits (401), Expect = 4e-37, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W ++ G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAEQASSDLLLDSSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940043|gb|AAX12560.1| LuxR-type transcriptional regulator [Aeromonas sobria] Length = 258 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 54/188 (28%), Positives = 84/188 (44%), Gaps = 16/188 (8%) Query: 61 SGDIPNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P ++TY D+ + + + LPI W + E G + V L Sbjct: 56 FNQCPVSWVQTYTDNNMLACDPVIQLARKQTLPIYWNRLDERASFLQEGTMDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ + G + F +S+ L+ ++ ++ ++ + L Sbjct: 116 GLRNGISFPLHGAAGETGILSFITSERASSDLLLESSPILSWMANYIFEAAIRVVRLRDS 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 AA LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DQHAA--LTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 233 Query: 227 KAIRFGYI 234 K I G + Sbjct: 234 KGISSGIL 241 >gi|59940067|gb|AAX12572.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W ++ G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|66277282|gb|AAY44572.1| LuxR-like protein [Aeromonas popoffii] Length = 260 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W ++ G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAEQASSDLLLDSSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940037|gb|AAX12557.1| LuxR-type transcriptional regulator [Aeromonas media] Length = 260 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 14/194 (7%) Query: 55 HNYDLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107 ++ P+ ++ Y D + + LPI W + E+ G + V Sbjct: 50 RRKEVLFNQCPDSWVQAYTVNNMLACDPIIQLARTQTLPIYWNRLDEKARFLQEGSMDVM 109 Query: 108 -LEGGLLPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDF 160 L GI+FP+ ++G + F +S+ L+ ++ ++ ++ Sbjct: 110 GLAAEFGLRNGISFPLHGATGESGILSFITRERASSDLLLESSPILSWMSNYIFEAAIRI 169 Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + + LT+RET CL A +G TS EIA LG++ TVN +L T K ++N Sbjct: 170 VRQSMREEDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMN 229 Query: 221 RIQAIAKAIRFGYI 234 R QAIAK + G + Sbjct: 230 RYQAIAKGVSSGIL 243 >gi|59940123|gb|AAX12600.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] gi|59940137|gb|AAX12607.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 158 bits (400), Expect = 5e-37, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W ++ G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|254473001|ref|ZP_05086399.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062] gi|211957722|gb|EEA92924.1| transcriptional regulator, LuxR family [Pseudovibrio sp. JE062] Length = 239 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 78/204 (38%), Gaps = 1/204 (0%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F + + + + L + + D + + P +W S Sbjct: 35 GFTSFCLAAIPEAGASFDGSIMLSGWRPEWQQRYLDRDYVQNDPIVAKARTASRPFLWSS 94 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + + + ++ Q + + G+ PV G +IF + L I H Sbjct: 95 VARDRNLTAAAQQVLSEARDYGMYDGVCVPVHGLQGYQGMLIFGGPEVRLNEREISVLHL 154 Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 EL ++ R+ LT RE CL+ + G TS EI++ L +S HT + YL Sbjct: 155 VGIYASNKVRELVGANTNRPRHRLTPRELECLKWSAAGKTSWEISQILNISQHTADWYLA 214 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 SA KL A NR A+A+ R G I Sbjct: 215 SAARKLHAANRTHAVAEGFRLGLI 238 >gi|197337087|ref|YP_002158591.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11] gi|197314339|gb|ACH63788.1| transcriptional activator protein LuxR [Vibrio fischeri MJ11] Length = 252 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 9/231 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K S +++ L + + Y + + I L NY + Sbjct: 19 KACRSNNDINQCLSDMTKMVHCE---YYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDA 75 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + NS PI W + V + S + ++ G +FP+ + Sbjct: 76 NLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNV-IKEAKTSGLITGFSFPIHTANNG 134 Query: 129 NGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183 G + F SE + + + A ++ ++ ++K + + +LT+RE CL Sbjct: 135 FGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLA 194 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G +S +I++ LG S TV +L +A +KL+ NR Q+I+KAI G I Sbjct: 195 WACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 245 >gi|462556|sp|P12746|LUXR_VIBFI RecName: Full=Transcriptional activator protein luxR gi|5726578|gb|AAD48473.1|AF170104_1 regulatory protein LuxR [Aliivibrio fischeri] gi|155231|gb|AAA27540.1| luxR protein [Aliivibrio fischeri] gi|59800242|gb|AAX07424.1| LuxR [Expression vector pLuxR-wt] gi|59800247|gb|AAX07428.1| LuxR-mut [Expression vector pHTSUB-105] gi|60594754|gb|AAX29978.1| LuxR [Cloning vector pHTSUB-106] Length = 250 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 9/231 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K S +++ L + + Y + + I L NY + Sbjct: 17 KACRSNNDINQCLSDMTKMVHCE---YYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDA 73 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + NS PI W + V + S + ++ G +FP+ + Sbjct: 74 NLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNV-IKEAKTSGLITGFSFPIHTANNG 132 Query: 129 NGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183 G + F SE + + + A ++ ++ ++K + + +LT+RE CL Sbjct: 133 FGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLA 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G +S +I++ LG S TV +L +A +KL+ NR Q+I+KAI G I Sbjct: 193 WACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 243 >gi|59940075|gb|AAX12576.1| LuxR-type transcriptional regulator [Aeromonas caviae] Length = 260 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W ++ G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940061|gb|AAX12569.1| LuxR-type transcriptional regulator [Aeromonas encheleia] gi|59940121|gb|AAX12599.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W ++ G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940115|gb|AAX12596.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 158 bits (399), Expect = 6e-37, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W ++ G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|59940031|gb|AAX12554.1| LuxR-type transcriptional regulator [Aeromonas bestiarum] Length = 260 Score = 158 bits (399), Expect = 7e-37, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 88/217 (40%), Gaps = 21/217 (9%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-------DDFLFHFNSGL 84 + Y + +++ + P+ ++ Y D + Sbjct: 34 GYDYYRFAVIIPMSMQRRKVVLF-------NQCPDSWVQAYTANHMLACDPIIQLARKQT 86 Query: 85 LPIIWQSIQEETVIESSGQLSVR-LEGGLLPFAGIAFPVRLGFHKNGYVIF------TSE 137 LPI W ++ G L V L GI+FP+ +NG + F +S+ Sbjct: 87 LPIYWNRLEGRARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENGILSFITAERASSD 146 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 147 LLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIACI 206 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 207 LGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 243 >gi|59940053|gb|AAX12565.1| LuxR-type transcriptional regulator [Aeromonas schubertii] Length = 260 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 52/188 (27%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W ++E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLEERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 A LT+RET CL A G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDDAQEALTDRETECLFWASRGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 I G + Sbjct: 236 MGISNGIL 243 >gi|310686584|gb|ADP02958.1| LuxR [Cloning vector pLR3] gi|310686589|gb|ADP02962.1| LuxR [Cloning vector pLR4] Length = 269 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 9/231 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K S +++ L + + Y + + I L NY + Sbjct: 36 KACRSNNDINQCLSDMTKMVHCE---YYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDA 92 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + NS PI W + V + S + ++ G +FP+ + Sbjct: 93 NLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNV-IKEAKSSGLITGFSFPIHTANNG 151 Query: 129 NGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183 G + F SE + + + A ++ ++ ++K + + +LT+RE CL Sbjct: 152 FGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLA 211 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G +S +I++ LG S TV +L +A +KL+ NR Q+I+KAI G I Sbjct: 212 WACEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 262 >gi|155233|gb|AAA27541.1| luxR protein [Aliivibrio fischeri] gi|455385|gb|AAA27551.1| regulatory protein [Aliivibrio fischeri] gi|225902|prf||1403259A luxR gene Length = 250 Score = 157 bits (398), Expect = 9e-37, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 9/231 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K S +++ L + + Y + + I L NY + Sbjct: 17 KACRSNNDINQCLSDMTKMVHCE---YYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDA 73 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + NS PI W + V + S + ++ G +FP+ + Sbjct: 74 NLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNV-IKEAKSSGLITGFSFPIHTANNG 132 Query: 129 NGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183 G + F SE + + + A ++ ++ ++K + + +LT+RE CL Sbjct: 133 FGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLA 192 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G +S +I++ LG S TV +L +A +KL+ NR Q+I+KAI G I Sbjct: 193 WACEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNRCQSISKAILTGAI 243 >gi|297489|emb|CAA68561.1| luxR [Aliivibrio fischeri] Length = 250 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 6/205 (2%) Query: 35 LYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE 94 T+ + I L NY + D + + NS PI W + Sbjct: 40 YLTLAIIYPHSMVKSDISILDNYPKKWRQYYDDANLIKYDPIVDYSNSNHSPINWNIFEN 99 Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT-SEFLMLANEVIIEAHGAC 153 V + S + ++ G +FP+ + G + F SE + + + A Sbjct: 100 NAVNKKSPNV-IKEAKTSGLITGFSFPIHTANNGFGMLSFAHSEKDNYIDSLFLHACMNI 158 Query: 154 YQVITDFLELFKK----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++ ++ ++K + + +LT+RE CL A +G +S +I++ LG S TV +L Sbjct: 159 PLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACEGKSSWDISKILGCSERTVTFHL 218 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 +A +KL+ NR Q+I+KAI G I Sbjct: 219 TNAQMKLNTTNRCQSISKAILTGAI 243 >gi|59940051|gb|AAX12564.1| LuxR-type transcriptional regulator [Aeromonas veronii] Length = 260 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 50/188 (26%), Positives = 81/188 (43%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W ++E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLEERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 A LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR AIA Sbjct: 176 EDDAQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYHAIA 235 Query: 227 KAIRFGYI 234 + G + Sbjct: 236 NGVSSGML 243 >gi|117618881|ref|YP_855090.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560288|gb|ABK37236.1| transcriptional activator protein AhyR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 261 Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 81/189 (42%), Gaps = 15/189 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF-------TSEFLMLANEVIIEAHGACYQVITDFLELFK 165 GI+FP+ +NG ++ +S+ L+ ++ ++ ++ + + Sbjct: 116 GLRNGISFPLHGAAGENGIILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSL 175 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAI Sbjct: 176 REDDPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAI 235 Query: 226 AKAIRFGYI 234 AK + G + Sbjct: 236 AKGVSSGIL 244 >gi|86356503|ref|YP_468395.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280605|gb|ABC89668.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 248 Score = 157 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 84/220 (38%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ L + ++R F + + + + + ++ + + + Sbjct: 30 DIFRFLKRVTEAYRSRAFMVLNLPPTTSLDLQGSTV--ITSWPAELLALYDQEALMVNSP 87 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + +E + + L L G FP G V F Sbjct: 88 VLRRLRTSTRPFFYDMTRETWSRDDGKSVLVTGLFERFRMMRGAYFPTHEASGLRGAVSF 147 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + +LT+RE CL G TS EI Sbjct: 148 AGDREPFSAAEMRELCYIAIHVFDRLAEIRNLDTRMTDSLTDREIDCLNWTAAGKTSAEI 207 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 208 AEILALSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 247 >gi|59940029|gb|AAX12553.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 261 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 22/218 (10%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-------DDFLFHFNSGL 84 + Y + +++ + P+ ++ Y D + Sbjct: 34 GYDYYRFALIIPMSMQRRKVVLF-------NQCPDSWVQAYTANHMLACDPIIQLARKQT 86 Query: 85 LPIIWQSIQEETVIESSGQLSVR-LEGGLLPFAGIAFPVRLGFHKNGYVIF-------TS 136 LPI W + E G L V L GI+FP+ +NG ++ +S Sbjct: 87 LPIYWNRLDERARFLQEGSLDVMGLAAEFGLRNGISFPLHGAAGENGIILSFITAERASS 146 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + L+ ++ ++ ++ + + + LT+RET CL A +G TS EIA Sbjct: 147 DLLLESSPILSWMSNYIFEAAIRIVRVSLREDDPQEALTDRETECLFWASEGKTSGEIAC 206 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG++ TVN +L T K ++NR QAIAK + G + Sbjct: 207 ILGITERTVNYHLNQVTRKTGSMNRYQAIAKGVSSGIL 244 >gi|59940083|gb|AAX12580.1| LuxR-type transcriptional regulator [Aeromonas schubertii] Length = 260 Score = 156 bits (395), Expect = 2e-36, Method: Composition-based stats. Identities = 51/188 (27%), Positives = 80/188 (42%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ V+ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPVLSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + + Sbjct: 236 KGVSSAIL 243 >gi|227821019|ref|YP_002824989.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227340018|gb|ACP24236.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 257 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 63/205 (30%), Positives = 81/205 (39%), Gaps = 22/205 (10%) Query: 50 LICELHNYDLDS-------GDIPNILIETYGDDF-------LFHFNSGLLPI-----IWQ 90 LIC + D++ ++P L+ Y + P W+ Sbjct: 56 LICSIPPIDMERLSAATVISNMPAELLNKYDSLSMLRFSTGVRRLRETTTPFQITLEDWE 115 Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 S E +S+ V L F FPV G VI L +E Sbjct: 116 S--EGGTPDSAADYIVMLRE-NGIFQANYFPVHDAEGGRGAVILMGPEADLPMTAAMELQ 172 Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 V E+ S++ L+ERE CL G TS EIA LGLS HTVN YL Sbjct: 173 MIAIHVYNRLAEIGSVWKSSSTTLSEREIQCLSWTAAGKTSAEIAGILGLSEHTVNHYLN 232 Query: 211 SATVKLDAVNRIQAIAKAIRFGYIC 235 T KLDAVNR QA+ KA++ GYI Sbjct: 233 HVTKKLDAVNRTQAVVKAMKKGYIS 257 >gi|59940059|gb|AAX12568.1| LuxR-type transcriptional regulator [Aeromonas allosaccharophila] Length = 260 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 79/188 (42%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TV +L T K ++ R QAIA Sbjct: 176 DDDPQEALTDRETECLFWASEGKTSSEIACILGITERTVIYHLNQVTRKTGSMTRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|88812489|ref|ZP_01127738.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis Nb-231] gi|88790275|gb|EAR21393.1| transcriptional regulator, LuxR family protein [Nitrococcus mobilis Nb-231] Length = 249 Score = 155 bits (392), Expect = 4e-36, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 88/224 (39%), Gaps = 11/224 (4%) Query: 23 LIQNRI----KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 +Q +A F + ++ + + + + D D + Sbjct: 22 GVQRLCAALGEAYGFDHFIYGASFPTSLIKPAVLVISGHPEAWRDHYQACGYLAVDPAVQ 81 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 H + P+IWQ + + I+ ++ +G++ +R + G + F+SE Sbjct: 82 HCTRSIRPLIWQDLMLDPKIDEKPFTVMQEAREFGLVSGVSLSIRGSRGELGVLSFSSER 141 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKR-------SSAARNLTERETSCLQLAGDGYTS 191 I++ +++ ++ R LT RE CL A +G TS Sbjct: 142 TAQQTRSEIDSAIPDLYLLSAYVHEAVGRLVTQGSLPFNRPELTAREHECLLWAAEGKTS 201 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 EIA LG+S T +L +A +L+A +R QA+A+A+ G I Sbjct: 202 WEIARILGISERTAIFHLQNAARRLNASSRQQAVARAVSQGLIS 245 >gi|15889561|ref|NP_355242.1| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|15157444|gb|AAK88027.1| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 238 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 54/230 (23%), Positives = 92/230 (40%), Gaps = 8/230 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHN----YDLDSGDI 64 + S+ + S L +Q + A +A T+ L + + + +++ Sbjct: 12 RDLSAAADKSQWLEALQEVMHAFGYAHVTLLRLPGGQNAFALPLVVESSLPVWVVNAMTK 71 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 L + + S ++P W +++ + S +V G + +G+ PV Sbjct: 72 DGALGDC---PVIKRGASSMMPQYWS-LEDPEMACGSLVDAVNSVGSMGITSGLMVPVNG 127 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + F + L + E + + L + S LT+RE ++ Sbjct: 128 MSGNRHLMNFAGDRDTLPQASLNELCMIALHALETYDRLCRVASKGPSPLTKRELDVVRW 187 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EIAE L +S HTVN Y+ +A KLD VNR Q +AK IR I Sbjct: 188 TAQGKTSVEIAELLSISEHTVNTYMNNAMRKLDCVNRTQLVAKTIRLRLI 237 >gi|59940131|gb|AAX12604.1| LuxR-type transcriptional regulator [Aeromonas hydrophila] Length = 260 Score = 154 bits (390), Expect = 8e-36, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 78/188 (41%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LP W + E G V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPNYWNRLDERARFLPEGSPDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +N + F +S+ L+ ++ ++ +Q + + + Sbjct: 116 RLRHGISFPLHGAAGENRILSFITAERASSDLLLESSPILSWMSNYIFQAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR QAIA Sbjct: 176 EDEPQEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|9297072|sp|P74946|VANR_VIBAN RecName: Full=Transcriptional activator protein vanR gi|1568660|gb|AAC45213.1| VanR [Listonella anguillarum] Length = 240 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 54/233 (23%), Positives = 92/233 (39%), Gaps = 15/233 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ +S +L L+ + N I F L+ ++ + L+ NY + Sbjct: 12 QQITSHDDLENVLNGLNNLIGHEFF-LFGLSFQPTLKTSETLV--TDNYPNSWRQQYDES 68 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + D + + + LPI W + + + G++ AG + P+ + Sbjct: 69 GFMHIDPIVKYSITNFLPIRW---DDAKRVNNDGRVIFEEARCNGLKAGFSIPIHGLRGE 125 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-------LFKKRSSAARNLTERETSC 181 G + F + + + + Q+I L + K + LT RE C Sbjct: 126 FGMISFATSDTKSYD--LNQQSIHTSQLIVPLLAHNIGNITRYHKDAKPRAVLTAREVQC 183 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A +G ++ EIA + S TV + +A KL A NR QAI KAI GYI Sbjct: 184 LAWAAEGKSAWEIATIINTSERTVKFHFSNACKKLGATNRYQAITKAILGGYI 236 >gi|218681045|ref|ZP_03528942.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 244 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 85/221 (38%), Gaps = 5/221 (2%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDL-DSGDIPNILIETYGD 74 ++ L + ++R F + + + + +L D +L+ + Sbjct: 26 DIFRFLKRVTEAYRSRAFMVLNLPPITSLDIQGSTVITSWPAELLALYDQEGLLVNS--- 82 Query: 75 DFLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 L + P + ++ + + L L G FP G V Sbjct: 83 PVLRRLRTSARPFSYDMSRDNWSRDDGKSVLVTALFERFRMMRGAYFPTHEPSGLRGAVS 142 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F+ + + + E V E+ + LT+RE CL G TS E Sbjct: 143 FSGDRETFSPAEMRELCYIAVHVYDRLAEIRNLDARITDTLTDREIDCLNWTAAGKTSAE 202 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IAE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 203 IAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243 >gi|59940041|gb|AAX12559.1| LuxR-type transcriptional regulator [Aeromonas eucrenophila] Length = 260 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 48/181 (26%), Positives = 78/181 (43%), Gaps = 14/181 (7%) Query: 64 IPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGLLPF 115 P+ ++ Y D + LPI W ++ G L V L Sbjct: 59 YPDPWVQAYTANHMLACDPIIQLARKQTLPIYWNRLEGRARFLQEGSLDVMGLAAEFGLR 118 Query: 116 AGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 119 NGISFPLHGAAGENGILSFITSERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLREHD 178 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RET CL A +G TS EIA LG++ TVN +L T K ++NR AIAK + Sbjct: 179 PHEALTDRETECLFWASEGKTSGEIACILGITERTVNYHLNQVTRKTGSMNRYHAIAKGV 238 Query: 230 R 230 Sbjct: 239 S 239 >gi|59714108|ref|YP_206883.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio fischeri ES114] gi|462557|sp|P35327|LUXS_VIBF1 RecName: Full=Transcriptional activator protein luxR gi|295436|gb|AAA27542.1| putative [Vibrio fischeri ES114] gi|59482356|gb|AAW87995.1| autoinducer-binding transcriptional activator protein LuxR [Vibrio fischeri ES114] Length = 250 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 85/186 (45%), Gaps = 6/186 (3%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + NY + D + + S PI W +++T+ + S + ++ Sbjct: 59 IDNYPEKWRKYYDDAGLLEYDPVVDYSKSHHSPINWNVFEKKTIKKESPNV-IKEAQESG 117 Query: 114 PFAGIAFPVRLGFHKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RS 168 G +FP+ + G + F S+ + + + + A ++ ++ ++K R Sbjct: 118 LITGFSFPIHTASNGFGMLSFAHSDKDIYTDSLFLHASTNVPLMLPSLVDNYQKINTTRK 177 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT+RE CL A +G ++ +I++ LG S TV +L + +KL+ NR Q+I+KA Sbjct: 178 KSDSILTKREKECLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNRCQSISKA 237 Query: 229 IRFGYI 234 I G I Sbjct: 238 ILTGAI 243 >gi|218463393|ref|ZP_03503484.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli Kim 5] Length = 245 Score = 153 bits (386), Expect = 2e-35, Method: Composition-based stats. Identities = 56/220 (25%), Positives = 81/220 (36%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ L + + R F + + + + L ++ + + + Sbjct: 27 DIFRFLKRVTEAYRCRAFMVLNLPPITSLDLQGSTV--LTSWPAELLALYDQEGLMVDSP 84 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + L V L FP G V F Sbjct: 85 VLRRLRTSARPFFYDMSRQSWPRDDGKSALVVGLFERFRMMRCAYFPTHEASGLRGAVSF 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + LTERE CL G TS EI Sbjct: 145 AGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTEREIDCLNWTAAGKTSAEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 205 AEILSLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|209809708|ref|YP_002265247.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] gi|208011271|emb|CAQ81712.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] Length = 247 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 8/182 (4%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL- 112 L NY L + + D + + S PI W +++ + S Q++V E + Sbjct: 59 LDNYPLYWRNYYDEANLIKDDPIVDYSFSHHSPINWSIFEKQKKM--SNQINVIEEAKIS 116 Query: 113 LPFAGIAFPVRLGFHKNGYVIF-TSEFLMLANEVIIEAHGACYQVITDFLE----LFKKR 167 ++G +FP+ G + F +S+ + + + A + ++ + L+ + K+ Sbjct: 117 GLYSGFSFPIHTKDGGFGMISFASSQKEKYIDNLFLNACMSVPLILPELLDSNQRITKED 176 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE CL + +G + EI++ LG S TV +L ++ +KL A NR Q+I+K Sbjct: 177 QQVHTKLTKREKECLIWSCEGKSRWEISKILGCSERTVTFHLANSQLKLGANNRCQSISK 236 Query: 228 AI 229 AI Sbjct: 237 AI 238 >gi|21311443|gb|AAM46724.1|AF452135_9 LuxR2 [Aliivibrio salmonicida] Length = 223 Score = 152 bits (385), Expect = 3e-35, Method: Composition-based stats. Identities = 47/182 (25%), Positives = 87/182 (47%), Gaps = 8/182 (4%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL- 112 L NY L + + D + + S PI W +++ + S Q++V E + Sbjct: 35 LDNYPLYWRNYYDEANLIKDDPIVDYSFSHHSPINWSIFEKQKKM--SNQINVIEEAKIS 92 Query: 113 LPFAGIAFPVRLGFHKNGYVIF-TSEFLMLANEVIIEAHGACYQVITDFLE----LFKKR 167 ++G +FP+ G + F +S+ + + + A + ++ + L+ + K+ Sbjct: 93 GLYSGFSFPIHTKDGGFGMISFASSQKEKYIDNLFLNACMSVPLILPELLDSNQRITKED 152 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE CL + +G + EI++ LG S TV +L ++ +KL A NR Q+I+K Sbjct: 153 QQVHTKLTKREKECLIWSCEGKSRWEISKILGCSERTVTFHLANSQLKLGANNRCQSISK 212 Query: 228 AI 229 AI Sbjct: 213 AI 214 >gi|222085036|ref|YP_002543565.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722484|gb|ACM25640.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 245 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 82/226 (36%), Gaps = 1/226 (0%) Query: 10 KSSSLQELSPRLHLIQNRIKA-RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + L+ ++ A R A +N Q ++N+ + + + Sbjct: 19 EIAGLKTQFDVFRFMKRVTDAYRCRAFMVVNLPSLTSFELQSNSVINNWPAELLTVYDQE 78 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 LP ++ + +S QL L I P Sbjct: 79 GLLRNSTVSRRLRVSTLPFVYDTAANTNRDDSKIQLRASLFERFRMARSICLPTHDASGI 138 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G VI + + E + V E+ LT+RE CL G Sbjct: 139 RGAVILSGDREAFTAEETKDLCYIAIHVFDRLAEIRNLDVRIVDTLTDRELDCLNWTAAG 198 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EIAE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 199 KTSAEIAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRVGLI 244 >gi|218661906|ref|ZP_03517836.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli IE4771] Length = 245 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 55/220 (25%), Positives = 81/220 (36%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ L + + R F + + + + L ++ + + + Sbjct: 27 DIFRFLKRVTEAYRCRAFMVLNLPPITSLDLQGSTV--LTSWPAELLALYDQEGLMVDSP 84 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + L V L FP G V F Sbjct: 85 VLRRLRTSARPFFYDMSRQSWPRDDGKSALVVGLFERFRMMRCAYFPTHEASGLRGAVSF 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + LT+RE CL G TS EI Sbjct: 145 AGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 205 AEILSLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|13507195|gb|AAK28504.1| MupR [Pseudomonas fluorescens] Length = 234 Score = 152 bits (383), Expect = 5e-35, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 14/209 (6%) Query: 35 LYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE 94 L+ + + P I + NY I + D +FH + LP++W + Sbjct: 31 LFGVKPTISTPFSSSTI--ISNYSRSWRSIYDANAYYEVDPVVFHCLNSSLPLVWT---K 85 Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 E I Q +G+ P+ + G + F ++ A+ + + + Sbjct: 86 ENFINKPEQQLYEAASASGVCSGLCMPIHGPRGEFGMLNFITDEKSPADVIRSKG-LPQF 144 Query: 155 QVITDFL-ELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 ++ D+L E F+K SAA LT RE CL+ G TS EI+ L + TVN Sbjct: 145 ALMRDYLIESFQKIQSAAEKEVEKPPKLTARELECLKWVAAGKTSWEISRILSCAEVTVN 204 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++ + K +A +R A+ IR G + Sbjct: 205 YHVTNFMRKFNAESRQHAVISGIRSGLVT 233 >gi|209548111|ref|YP_002280028.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533867|gb|ACI53802.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 244 Score = 151 bits (382), Expect = 6e-35, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 84/221 (38%), Gaps = 5/221 (2%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDL-DSGDIPNILIETYGD 74 ++ L + ++R F + + + + +L D +L+ + Sbjct: 26 DIFRFLKRVTEAYRSRAFLVLNLPPITSLDIQGSTVITSWPAELLALYDQEGLLVNS--- 82 Query: 75 DFLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 L + P + +E + + L L G FP G + Sbjct: 83 PVLRRLRTSARPFFYDMSRENWSRDDGKSILVASLFERFRMMRGAYFPTHEPSGVRGAIS 142 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F + + + E V E+ + LT+RE CL G TS E Sbjct: 143 FAGDREPFSPAEMRELCYISIHVYDRLAEIRNLDTRITDTLTDREIDCLNWTAAGKTSAE 202 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IAE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 203 IAEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243 >gi|46370360|gb|AAS89968.1| transcriptional regulator [Agrobacterium vitis] Length = 230 Score = 151 bits (382), Expect = 7e-35, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 90/230 (39%), Gaps = 6/230 (2%) Query: 9 KKSSSLQELSPRLHLIQN---RIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 ++ S + L++ A+ F + + SA + + N+ D Sbjct: 2 RELSGYKTQFDVFRLMKRLTDFFGAKGFMVMNVPSAGAKTLTGSSV--ITNWPADFLSEY 59 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 ++ + +P+++ + + +L+ L G FPV Sbjct: 60 DMASLLSSSPMFNRLRNTSIPVVFDIHVVARERDPKTVELATDLFLRFGMPRGACFPVHD 119 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G V E + ++ H V E+ + + LTERE CL Sbjct: 120 AHGNRGAVNICGEMPAFSFVDMVLLHYLAGHVFNRLAEIRELDARVTETLTEREIECLTW 179 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EIAE +GLS HT+N YL AT KLD VNR QA+AKA+R I Sbjct: 180 TAAGKTSVEIAEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSLI 229 >gi|325293644|ref|YP_004279508.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325061497|gb|ADY65188.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 238 Score = 151 bits (381), Expect = 9e-35, Method: Composition-based stats. Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 1/161 (0%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + S ++P W ++ S ++S L G+ +G+ PV + F Sbjct: 79 PVIKRGASSMMPQYWSLDDKDINCGSLLEVSTLLR-GMGITSGLLVPVNGMDGNRHLMNF 137 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + +L+ + E + + L + S LT+RE ++ G TS EI Sbjct: 138 AGDCDVLSQGSLNELCMIALHALEAYDRLCRAGSKLPSPLTKRELDVVRWTAQGKTSVEI 197 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 AE L +S HTVN Y+ +A KLD VNR Q +AK IR G I Sbjct: 198 AELLSISEHTVNTYMNNAIRKLDCVNRAQLVAKTIRLGLIS 238 >gi|209809715|ref|YP_002265254.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] gi|21311436|gb|AAM46717.1|AF452135_2 LuxR1 [Aliivibrio salmonicida] gi|208011278|emb|CAQ81719.1| transcriptional activator protein LuxR [Aliivibrio salmonicida LFI1238] Length = 248 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 9/229 (3%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 SSS +++ L + N + + L++I S + LI L NY D + Sbjct: 19 SSSNDQINQCLIEVANTLNCE-YYLFSIISNKSMIKPDVLI--LDNYPQKWRDHYDETNL 75 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + + PI+W ++T+ + + ++ L ++G +FP+ G Sbjct: 76 IKYDPIVDYCFFNHSPILWDIFGKKTLKTNKPNV-IQEAKSLGLYSGFSFPIHSVNGSFG 134 Query: 131 YVIFTSEFLMLANE-VIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCLQLA 185 + F + + + A +I L+ + K + + +LT+RE CL A Sbjct: 135 MISFAHSNKKQSTDCLFSTACMYIPLIIPALLDSYYRINKNNTESTHDLTKREKECLAWA 194 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +S EI+ LG + TV +L ++ KL NR Q+++KAI G I Sbjct: 195 CEGKSSWEISIILGCTERTVAFHLTNSQTKLGTTNRCQSVSKAILTGAI 243 >gi|192288754|ref|YP_001989359.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192282503|gb|ACE98883.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 243 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 85/247 (34%), Gaps = 21/247 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHL------IQNRIKARNFALYTINSALDFPRRQQLICEL 54 + E+ L G+++ + RL ++ I + F Y + P R + EL Sbjct: 3 VGEDQLWGRRALEFVDSVERLEAPALISRFESLIASCGFTAYIMA---GLPSRNAGLPEL 59 Query: 55 HNYDLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107 + P + Y D H + + P +W + + + + Sbjct: 60 ----TLANGWPRDWFDLYVSENFSAVDPVPRHGATTVYPFVWSDAPYDRDRDPAAHRVMT 115 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 G P+ + + + L+ + L + + Sbjct: 116 RAAEFGLVEGYCIPLHYDDG-SAAISMAGKDPDLSPAARGAMQLVSIYAHSRLRALSRPK 174 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE LQ A G T+ EI+ L ++ TV +L A KLDA NR A+AK Sbjct: 175 PIRRNRLTPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAK 234 Query: 228 AIRFGYI 234 A+ G I Sbjct: 235 ALTLGLI 241 >gi|316931698|ref|YP_004106680.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gi|315599412|gb|ADU41947.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris DX-1] Length = 243 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 85/247 (34%), Gaps = 21/247 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHL------IQNRIKARNFALYTINSALDFPRRQQLICEL 54 + E+ L G+++ + RL ++ I + F Y I P R + EL Sbjct: 3 VGEDQLWGRRALEFVDAVERLDAPALVSQFESLIASCGFTAYIIA---GLPSRNAGLPEL 59 Query: 55 HNYDLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107 + P + Y D H S + P +W + + + + Sbjct: 60 ----TLANGWPRDWFDLYVSENFSAVDPVPRHVASTVHPFVWSEAPYDRDRDPAAHRVMT 115 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 G P+ + + + L+ + L + + Sbjct: 116 RAAEFGLVEGYCIPLHYDDG-SAAISMAGKDPDLSPAARGAMQLVSIYAHSRLRTLGRPK 174 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE LQ A G T+ EI+ L ++ TV +L A KLDA NR A+AK Sbjct: 175 PGRRNKLTARECEILQWAAQGKTAWEISMILCIAERTVKFHLIEAARKLDAANRTAAVAK 234 Query: 228 AIRFGYI 234 A+ G I Sbjct: 235 ALTLGLI 241 >gi|39933398|ref|NP_945674.1| two-component LuxR family transcriptional regulator [Rhodopseudomonas palustris CGA009] gi|39647244|emb|CAE25765.1| two-component transcriptional regulator, LuxR family [Rhodopseudomonas palustris CGA009] Length = 243 Score = 150 bits (379), Expect = 1e-34, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 85/247 (34%), Gaps = 21/247 (8%) Query: 1 MSENTLTGKKSSSLQELSPRLHL------IQNRIKARNFALYTINSALDFPRRQQLICEL 54 + E+ L G+++ + RL ++ I + F Y + P R + EL Sbjct: 3 VGEDQLWGRRALEFVDSVERLEAPALISRFESLIASCGFTAYIMA---GLPSRNAGLPEL 59 Query: 55 HNYDLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107 + P + Y D H + + P +W + + + + Sbjct: 60 ----TLANGWPRDWFDLYVSENFSAVDPVPRHGATTVHPFVWSDAPYDRDRDPAAHRVMT 115 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 G P+ + + + L+ + L + + Sbjct: 116 RAAEFGLVEGYCIPLHYDDG-SAAISMAGKDPDLSPAARGAMQLVSIYAHSRLRALSRPK 174 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE LQ A G T+ EI+ L ++ TV +L A KLDA NR A+AK Sbjct: 175 PIRRNRLTPRECEILQWAAQGKTAWEISVILCITERTVKFHLIEAARKLDAANRTAAVAK 234 Query: 228 AIRFGYI 234 A+ G I Sbjct: 235 ALTLGLI 241 >gi|48375112|gb|AAT42219.1| PcoR [Pseudomonas fluorescens] Length = 234 Score = 150 bits (378), Expect = 2e-34, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 83/225 (36%), Gaps = 17/225 (7%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 L + + L+ + + P I + NY + D +FH Sbjct: 17 VLFSLAKDCGFSS-VLFGVKPTISTPFSSSTI--ISNYSKSWRAFYDSNACYEVDPVVFH 73 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 + LP++W +E I +G+ P+ + G + F ++ Sbjct: 74 CLNSSLPLVWT---KENFINPPELQLYEAASASGVRSGLCMPIHGPRGEFGMLNFITDEK 130 Query: 140 MLANEVIIEAHGA-CYQVITDFL--------ELFKKRSSAARNLTERETSCLQLAGDGYT 190 A+ +I A G + ++ D+L +K LT RE CL+ G T Sbjct: 131 SPAD--LINAQGLPQFALMRDYLIESFQKLQNASEKEFETPPXLTARELECLKWVAAGKT 188 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 S EI+ L + TVN ++ + K +A +R A+ IR G + Sbjct: 189 SWEISRILSCAEVTVNYHVTNFMRKFNAESRQHAVISGIRSGLVT 233 >gi|222147695|ref|YP_002548652.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221734683|gb|ACM35646.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 230 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 88/233 (37%), Gaps = 12/233 (5%) Query: 9 KKSSSLQELSPRLHLIQN---RIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 ++ S + L++ A+ F + + SA + + N+ D Sbjct: 2 RELSGYKTQFDVFRLMKRLTDFFGAKGFMVMNVPSAGAKTLTGSSV--ITNWPADFLSEY 59 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI----AFP 121 ++ + +P++ V +V L L G+ FP Sbjct: 60 DMASLLSSSPMFNRLRNTSIPVV---FDVHVVARERDPKTVELATDLFLRFGMPRGACFP 116 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 V G V E + ++ V E+ + + LTERE C Sbjct: 117 VHDAHGNRGAVNICGEMPAFSFVDMVLLQYLAGHVFNRLAEIRELDARVTETLTEREIEC 176 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G TS EIAE +GLS HT+N YL AT KLD VNR QA+AKA+R I Sbjct: 177 LTWTAAGKTSVEIAEIMGLSEHTINHYLNRATRKLDTVNRTQAVAKALRLSLI 229 >gi|59940155|gb|AAX12616.1| LuxR-type transcriptional regulator [Aeromonas sp. 13m] Length = 260 Score = 149 bits (377), Expect = 3e-34, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 80/188 (42%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LPI W + E G L V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPIYWNRLDERARFLQEGSLDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ +NG + F +S+ L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHGAAGENGILSFITAERASSDLLLESSPILSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RET CL A +G TS +IA L ++ TVN +L T K ++NR QAIA Sbjct: 176 EDDPQEALTDRETECLFCASEGKTSGDIACILRITERTVNYHLNHVTRKTVSMNRYQAIA 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|149187186|ref|ZP_01865484.1| LuxR, transcriptional regulator [Vibrio shilonii AK1] gi|148838722|gb|EDL55661.1| LuxR, transcriptional regulator [Vibrio shilonii AK1] Length = 259 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 12/226 (5%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 +LS +L + I F Y ++ + L N L Y D Sbjct: 25 DLSGKLAEVTEVI---GFEHYLFAVSVPVTVMRAENVVLTNQPLAWRQFYEDNEVMYFDQ 81 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + H + +LP+ W+S+ + + + + + GL GI P+R G + F+ Sbjct: 82 VVLHCRNSMLPLQWRSLLANDIPDDKNVIKLASDFGLG--DGITIPLRANHGCLGLISFS 139 Query: 136 SEF-LMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTERETSCLQLAGDG 188 + + ++ D++ + +LT RE CL +G Sbjct: 140 NRKGTRKIDHESTILSTYVGSLVADYINDIRNHVCEKQFGQVKSSLTLREQICLAWVAEG 199 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S E+A+ +G S TVN ++ +A+ KL+A +R QA++KA+ G I Sbjct: 200 KSSWEVAQIIGCSERTVNFHIQNASEKLNAFSRTQAVSKALLTGSI 245 >gi|218673534|ref|ZP_03523203.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 245 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 81/220 (36%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + R F + + + + + ++ + + + Sbjct: 27 DIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGSTV--ITSWPAELLALYDQEGLMVNSP 84 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + L V L FP G V F Sbjct: 85 VLRRLRTSARPFFYDMSRQNWPRDDGKSALVVGLFERFRMTRCAYFPTHEPSGLRGAVSF 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + LT+RE CL G TS EI Sbjct: 145 AGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRITDALTDREIDCLNWTAAGKTSAEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 205 AEILALSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|260773944|ref|ZP_05882859.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP 69.14] gi|260610905|gb|EEX36109.1| transcriptional activator protein luxR [Vibrio metschnikovii CIP 69.14] Length = 240 Score = 149 bits (376), Expect = 3e-34, Method: Composition-based stats. Identities = 57/227 (25%), Positives = 87/227 (38%), Gaps = 11/227 (4%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 S Q L P L + + I+ F L+ ++ LI NY L + Sbjct: 16 SFQALQPTLAKMNHLIEHEYF-LFGLSLQTTLTSNDTLI--ADNYPLAWRQQYDESQFML 72 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D + + + LPI W I+ Q+ G + PV + G + Sbjct: 73 IDPIVRYSMTNFLPIRWSEIR---AHHQDSQIIFEEARLNGLKEGFSIPVHGLRGEFGML 129 Query: 133 IFTSEFL---MLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQLAGD 187 F + L I + + + + + + + LT RE CL A + Sbjct: 130 SFATSDTRHYDLNLPAIQASQLLVPLLAQNIDNIVRCHRDAKPRAELTCREGQCLSWAAE 189 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA+ + S TV +L +A KL A NR QAI KAI GYI Sbjct: 190 GKSAWEIAQIINTSERTVKFHLSNACKKLGATNRYQAITKAILGGYI 236 >gi|190890568|ref|YP_001977110.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695847|gb|ACE89932.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 246 Score = 149 bits (376), Expect = 4e-34, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 82/220 (37%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + R F + + + + + ++ + + + Sbjct: 28 DIFRFMKRMTEAYRCRAFMVLNLPPITSLDLQGNTV--ITSWPAELLALYDQEGLMVNSP 85 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + + L V L FP G V F Sbjct: 86 ILRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPTHEPSGLRGAVSF 145 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + LT+RE CL G TS EI Sbjct: 146 AGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEI 205 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 206 AEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 245 >gi|315182540|gb|ADT89453.1| Transcriptional activator protein vanR [Vibrio furnissii NCTC 11218] Length = 240 Score = 148 bits (375), Expect = 4e-34, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 89/231 (38%), Gaps = 11/231 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + +S + L L + N I F L+ ++ + LI NY + Sbjct: 12 QVITSYENLETTLAALNNIIDHEYF-LFGLSLQPTLTTSETLI--TDNYPASWRQQYDEA 68 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + D + + + LPI W I V + G + P+ + Sbjct: 69 GFMHVDPIVQYSMTNFLPIRWSQI---PVASNQAHEMFEEARINGLKEGFSIPIHGLRGE 125 Query: 129 NGYVIFTSEFL---MLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQ 183 G + F + L + I + + + + + K ++ LT RE CL Sbjct: 126 FGMLSFATSDTRHYELNCDAIQTSQLIIPLLSHNIHNIARCHKDAAPRIELTARENQCLT 185 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G ++ EIA+ + S TV ++ +A KL A NR QAI KAI GYI Sbjct: 186 WAAEGKSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAITKAILGGYI 236 >gi|115524334|ref|YP_781245.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115518281|gb|ABJ06265.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 246 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 69/227 (30%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ S+L +S + I+ A F + + + + + + + Sbjct: 19 EELSTLTTISAAIDFIEKGFCAYGFETIIVTGIPNHKQSFSQMVMAKRWPDEWFKLYTQN 78 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + H P W E + G PV Sbjct: 79 NYHRDDPVVRHLRKSFNPFEWSDAPYSRRNEPRAAAVMDRAADFRMSRGFIVPVHGLAGY 138 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 V + + L H L + A LT RE L G Sbjct: 139 EAAVSLGGDHIDLNPRSKPALHLMAMYAFDRIRSLVSPANDAPPRLTHRECETLNWTAQG 198 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++ EI E L ++ T +L +A KL AVN+ A+A AIR I Sbjct: 199 KSAWEIGEILQIAQRTAEEHLATAARKLGAVNKTHAVAIAIRQKLIA 245 >gi|15964582|ref|NP_384935.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309328|ref|ZP_07588991.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307320064|ref|ZP_07599485.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15073760|emb|CAC45401.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021] gi|306894279|gb|EFN25044.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306900197|gb|EFN30815.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 277 Score = 148 bits (374), Expect = 5e-34, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 87/235 (37%), Gaps = 11/235 (4%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQL--ICELHNYDLDSGDIP 65 + + L+ + ++ + F + + ++ ++L + N + + Sbjct: 47 ASEIARLETQFDIIRYMRRITQIFGFKTF-LICSIPAVEVERLSATTVISNMPAELLNKY 105 Query: 66 NILIETYGDDFLFHFNSGLLPI-----IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + L + P W+ +E +S+ L F F Sbjct: 106 DSLSMLRFSTGVRRLRETTTPFQVMLEDWE--REGGKPDSAADYIAMLRE-NGIFQANYF 162 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 PV G VI L +E V E+ + L+ERE Sbjct: 163 PVHDAEGGRGAVILMGPEAELPMTAAMELQMIAIHVYNRLAEIGSVWKNTNTVLSEREIQ 222 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 CL G TS EIA LGLS HTVN YL T KLDAVNR QA+ KA++ GYI Sbjct: 223 CLSWTAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYIS 277 >gi|116250693|ref|YP_766531.1| LuxR/GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255341|emb|CAK06416.1| putative LuxR/GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 245 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 84/220 (38%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + ++R F + + F + + + ++ + + + Sbjct: 27 DIFRFMKRVTEAYRSRAFMVLNLPPITSFDLQGSTV--ITSWPAELLALYDQEGLMVNSP 84 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + + L L FP G V F Sbjct: 85 VLRRLRTSARPFFYDMSRQNWSRDDGKSILVASLFERFKMMRCAYFPTHEPSGLRGAVSF 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + ++ + E V E+ + LT+RE CL G TS EI Sbjct: 145 AGDREPFSSAEMRELCYIAIHVFDRLAEIRNLDTRMTDTLTDREIDCLNWTAAGKTSAEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 205 AEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|218532854|ref|YP_002423670.1| LuxR family transcriptional regulator [Methylobacterium chloromethanicum CM4] gi|218525157|gb|ACK85742.1| transcriptional regulator, LuxR family [Methylobacterium chloromethanicum CM4] Length = 243 Score = 148 bits (374), Expect = 6e-34, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 85/228 (37%), Gaps = 6/228 (2%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYT--INSALDFPRR-QQLICELHNYDLDSGDIPN 66 ++ S +++ L I R+ A + P R Q+ L N + + Sbjct: 18 RAHSREDI---LRAIMPRLNALGIEYVISAMIPLKRLPARTQKNYLILENTSDEWNRLYF 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 Y D + S W I+ V++ + + G G P+ Sbjct: 75 SKGYMYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLATLE 134 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + G + F L ++ V+ L + S LT RE LQ Sbjct: 135 EERGGLTFAGPRLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWVA 194 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T EI E +G+S H V+ +L SA VKL V+R QA+A+ R G I Sbjct: 195 EGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242 >gi|163853910|ref|YP_001641953.1| autoinducer-binding domain-containing protein [Methylobacterium extorquens PA1] gi|163665515|gb|ABY32882.1| Autoinducer-binding domain protein [Methylobacterium extorquens PA1] Length = 243 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 85/228 (37%), Gaps = 6/228 (2%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYT--INSALDFPRR-QQLICELHNYDLDSGDIPN 66 ++ S +++ L I R+ A + P R Q+ L N + + Sbjct: 18 RAHSREDI---LRAIMPRLNALGIEYVISAMIPLKRLPARTQKNYLILENTSDEWNRLYF 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 Y D + S W I+ V++ + + G G P+ Sbjct: 75 SKGYMYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLATLE 134 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + G + F L ++ V+ L + S LT RE LQ Sbjct: 135 EERGGLTFAGPQLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWVA 194 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T EI E +G+S H V+ +L SA VKL V+R QA+A+ R G I Sbjct: 195 EGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 242 >gi|218508993|ref|ZP_03506871.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli Brasil 5] Length = 245 Score = 147 bits (372), Expect = 9e-34, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 82/220 (37%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + R F + + + + + ++ + + + Sbjct: 27 DIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGNTV--ITSWPAELLALYDQEGLMVNSP 84 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + + L V L FP G V F Sbjct: 85 VLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPTHEPSGLRGAVSF 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + LT+RE CL G TS EI Sbjct: 145 AGDREPFSPAEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 205 AEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|170745593|ref|YP_001776815.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170752150|ref|YP_001783296.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170659247|gb|ACB28299.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] gi|170659277|gb|ACB28328.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 248 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 49/233 (21%), Positives = 87/233 (37%), Gaps = 11/233 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHN-YDLDSGDIPNI 67 +++S+ ++ L + ++ I P C L + + + G Sbjct: 19 RRASTDVDVYSELR---RSGAIFGYDVFLIAGLPRAPHENLYDCSLISGWPPEWGRRYQE 75 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + D + H P +WQ + V G + + G P Sbjct: 76 RRHMHVDPVIRHIRGTTDPFLWQEAVDAQVTPE-GMVVMEEARAFSLNEGFCVPFHQIDG 134 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS------SAARNLTERETSC 181 V F E + L+ + H ++ + ++R + LT RE C Sbjct: 135 TEAGVSFGGEQVRLSQDERAALHLVAIYAMSTAKAIARRRGLSEDDGTPPSPLTGREAEC 194 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ + G ++ EI L +S TV +LGSA KL++V R QA+A+A+R I Sbjct: 195 LKWSSTGKSAWEIGVILSISTRTVEHHLGSAVRKLNSVTRTQAVAEALRRHII 247 >gi|220921013|ref|YP_002496314.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945619|gb|ACL56011.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 245 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 80/239 (33%), Gaps = 23/239 (9%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + +SS L L +F + P RQ E N P Sbjct: 16 QAASSQTALFSELKEAGRYFGYDSFIV------TGLPHRQG---ENLNDCSLLVGWPMEW 66 Query: 69 IETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + Y D + L P +W + + + G P Sbjct: 67 AKRYTERRYIHVDPVIAQIRRTLDPFMWDEAPYDRSDPGPATV-MNESPSFGLNQGFCVP 125 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LT 175 + + V F + + L+++ H + L S+ A + Sbjct: 126 IHRIDGREAGVSFGASRMDLSDDARAGLHLVAIYAFSAARALSAMPSNPADPERQPPRCS 185 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE C++ A G T EI+E L LS TV AYL +A KL NR+ IA+AIR G I Sbjct: 186 AREIECMRWAAAGKTGWEISEILSLSQRTVEAYLNNAARKLGVANRVHLIAEAIRHGLI 244 >gi|327188113|gb|EGE55336.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 245 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 82/220 (37%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + R F + + + + + ++ + + + Sbjct: 27 DIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGNTV--ITSWPAELLALYDQEGLMVNSP 84 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + + L V L FP G V F Sbjct: 85 VLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPTHEPSGLRGAVSF 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + LT+RE CL G TS EI Sbjct: 145 AGDREPFSPTEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 205 AEILVLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 244 >gi|188584215|ref|YP_001927660.1| LuxR family transcriptional regulator [Methylobacterium populi BJ001] gi|179347713|gb|ACB83125.1| transcriptional regulator, LuxR family [Methylobacterium populi BJ001] Length = 243 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 51/229 (22%), Positives = 81/229 (35%), Gaps = 6/229 (2%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYT--INSALDFPRR-QQLICELHNYDLDSGDIPN 66 ++ S +++ L I R+ A + P R Q+ L N + + Sbjct: 18 RAHSREDI---LRAIMPRLNAMGIEYVISAMIPQKRLPARTQKNFVILENTSDEWNRLYF 74 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 Y D + S W + + + + G P+ Sbjct: 75 SKGYMYFDPIVQATLSSTTGFRWSETDPAGLQDPKARQVMNEAVEFGLGDGFTVPLATLE 134 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + G + F L ++ V+ L + S LT RE LQ Sbjct: 135 EERGGLTFAGRQLDISPGQRGMLTLIASYVVGQTLLIDNGPSERRMGLTPRERESLQWVA 194 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G T EI E +G+S H V+ +L SA VKL V+R QA+A+ R G I Sbjct: 195 EGKTDWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLIV 243 >gi|37223223|gb|AAQ90210.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 87/218 (39%), Gaps = 9/218 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K S +++ L + + Y + + I L NY + Sbjct: 19 KACRSNNDINQCLSDMTKMVHCE---YYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDA 75 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + NS PI W + V + S + ++ G +FP+ + Sbjct: 76 NLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNV-IKEAKSSGLITGFSFPIHTANNG 134 Query: 129 NGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183 G + F SE + + + A ++ ++ ++K + + +LT+RE CL Sbjct: 135 FGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLA 194 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 A +G +S +I++ LG S TV +L +A +KL+ NR Sbjct: 195 WACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232 >gi|241203295|ref|YP_002974391.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857185|gb|ACS54852.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 244 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 83/220 (37%), Gaps = 3/220 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + ++R F + + F + + + ++ + + + Sbjct: 26 DIFRFMKRVTEAYRSRAFMVLNLPPITSFDLQGSTV--ITSWPAELLALYDQEGLMVNSP 83 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + + L L FP G + F Sbjct: 84 VLRRLRTSARPFFYDMSRQNLSRDDGKSILVASLFERFKMMRCAYFPTHEPSGLRGAISF 143 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E + E+ + LT+RE CL G TS EI Sbjct: 144 AGDREPFSPAEMRELCYISIHIFDRLAEIRNLDTRMTDTLTDREIDCLNWTAAGKTSAEI 203 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AE L LS HTVN YL AT KLD VNR QA+AKA+R G I Sbjct: 204 AEILTLSEHTVNHYLNRATKKLDTVNRTQAVAKALRIGLI 243 >gi|227821018|ref|YP_002824988.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227340017|gb|ACP24235.1| putative LuxR/GerE family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 246 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 95/227 (41%), Gaps = 5/227 (2%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTI-NSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + ++ L I + R F + I +S Q L L ++ ++ + Sbjct: 22 AIGNEDDVKRVLDQISDAFGFRGFMVLAIPDSGCHSLAAQAL---LTSWPMEFLRRYDSA 78 Query: 69 IETYGDDFLFHFNSGLLPIIWQS-IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 G + +P + + + ++ G+ ++ + G+ PV Sbjct: 79 GLIEGSPVIQRLRRSTIPFTYDAHLLARRRVDGKGEAAISVFEAAGMPRGLYLPVHDAKG 138 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + F + +++++ + + + + E+ +L+ RE CL+ A Sbjct: 139 GRAAIAFGGDREVVSSDEMQALNFWAGLLYSRLSEVRTHDRRRPGSLSRREIECLRWAAA 198 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ E+A + LS +TVN YL AT KLD+VNR+Q +AKA+R G I Sbjct: 199 GKTTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAMRAGLI 245 >gi|150395665|ref|YP_001326132.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150027180|gb|ABR59297.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 246 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 3/225 (1%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + ++ L + R F + I + Q + D LI+ Sbjct: 23 IENEDDVRGALGRVSEGFGFRGFMVLAIPDSGSHSLTAQALMTTWPMDFLRRYDSARLID 82 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEET-VIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 G + +P + + Q ++ G+ ++ + G+ PV Sbjct: 83 --GSPVIQRLRRSTIPFTYDAHQLARGRVDGKGEAAICVFEQANMPRGVYLPVHDAAGHR 140 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 V F + ++ + + E + + + E+ + +L+ RE CL+ A G Sbjct: 141 AAVAFGGDRSAVSGDELQELNLWAGLLYSRLSEVRTRDRRGPGSLSRREIECLRWAAAGK 200 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ E+A + LS +TVN YL AT KLD+VNR+Q +AKAIR G I Sbjct: 201 TTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIRAGLI 245 >gi|159045392|ref|YP_001534186.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157913152|gb|ABV94585.1| transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 236 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 103/240 (42%), Gaps = 30/240 (12%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSA--------LDFPRRQQLICELHNYDLD 60 +++ SL ++ RL ++ ++ NFA + ++++ D P ++ I ++D Sbjct: 13 QEAKSLDDVQARLFGLRESLEVENFAYHCLDASGNKYGAMTYDAPWVKRYI------EMD 66 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + ++ TY FH P+ W+ + +++ + + G++ Sbjct: 67 YARVDPVIKGTYQR---FH------PVDWKQLDWSP--KAAREFMGEALETGVGNQGLSV 115 Query: 121 PVRLGFHKNGYVIF-----TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 PVR + + + E + A + + LEL + + A+ L+ Sbjct: 116 PVRGPNGQFAVFSVNNRATDAAWESYQKEYLKTFILAAHFINQRALELEEDINPTAKPLS 175 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE+ L +G + ++AEKL +S HT+ Y+ SA KL A N A+A+A+ G I Sbjct: 176 PRESDALTHLANGLSRGQVAEKLKISEHTLRVYIESARFKLGAANTTHAVARAMVRGLIV 235 >gi|37223217|gb|AAQ90206.1| LuxR [Aliivibrio fischeri] Length = 233 Score = 147 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 6/193 (3%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 Y + + I L NY + + D + + NS PI W + Sbjct: 41 EYYLLAIIYPHSMVKSDISILDNYPKKWREYYDDANLIKYDPIVDYSNSNHSPINWNIFE 100 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT-SEFLMLANEVIIEAHGA 152 V + S + ++ G +FP+ + G + F SE + + + A Sbjct: 101 NNAVNKKSPNV-IKEAKTSGLITGFSFPIHTANNGFGMLSFAHSEKDNYIDSLFLHACMN 159 Query: 153 CYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 ++ ++ ++K + + +LT+RE CL A +G +S +I++ LG S TV + Sbjct: 160 IPLIVPSLVDNYRKINIANNKSNNDLTKREKECLAWACEGKSSWDISKILGCSERTVTFH 219 Query: 209 LGSATVKLDAVNR 221 L +A +KL+ NR Sbjct: 220 LTNAQMKLNTTNR 232 >gi|260770016|ref|ZP_05878949.1| transcriptional activator protein vanR [Vibrio furnissii CIP 102972] gi|260615354|gb|EEX40540.1| transcriptional activator protein vanR [Vibrio furnissii CIP 102972] Length = 240 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 89/231 (38%), Gaps = 11/231 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + +S + L L + N I F L+ ++ + +I NY + Sbjct: 12 QVITSYENLESTLAALNNIIDHEYF-LFGLSLQPTLTTSETII--TDNYPASWRQQYDEA 68 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + D + + + LPI W I V + G + P+ + Sbjct: 69 GFMHVDPIVQYSMTNFLPIRWSQI---PVASNQAHEMFEEARINGLKEGFSIPIHGLRGE 125 Query: 129 NGYVIFTSEFL---MLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQ 183 G + F + L + I + + + + + K ++ LT RE CL Sbjct: 126 FGMLSFATSDTRHYELNCDAIQTSQLIIPLLSHNIHNIARCHKDAAPRIELTARENQCLT 185 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G ++ EIA+ + S TV ++ +A KL A NR QAI KAI GYI Sbjct: 186 WAAEGKSAWEIAKIIDTSERTVKFHIANACKKLGATNRYQAITKAILGGYI 236 >gi|27376354|ref|NP_767883.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349494|dbj|BAC46508.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 146 bits (369), Expect = 2e-33, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 83/228 (36%), Gaps = 8/228 (3%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTIN----SALDFPRRQQLICELHNYDLDSGDIPNIL 68 L +++ L + + F + + + + PR L D+ + Sbjct: 17 QLPDVASILDAMSRTLGQHGFDYFCSSYVAPLSTESPREAVL---AERLPAGFLDMYSEA 73 Query: 69 IETYGDDFLFHFNSGLLPIIW-QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 + D L + + L P W + + E VR G+ PV Sbjct: 74 QYVWHDPALRYCRTTLQPFRWFREAPYDPEREPRAVELVRRARDFGMVDGVVIPVISPAG 133 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + G V F + L + H L+L ++ L+ RE L LA Sbjct: 134 RTGQVWFGGAEIDLPERDLPALHLMALYAFDRVLKLRGLPAAPQLALSLREREVLTLAAV 193 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G +S+EIA+ L ++ TV A++ S KL A R QA+ A+R I Sbjct: 194 GRSSDEIADALAITGRTVKAHIKSCCKKLGAATRTQAVMIAMRDRIIS 241 >gi|15964581|ref|NP_384934.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307309327|ref|ZP_07588990.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307320063|ref|ZP_07599484.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15073759|emb|CAC45400.1| Putative transcriptional regulator [Sinorhizobium meliloti 1021] gi|306894278|gb|EFN25043.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306900196|gb|EFN30814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 246 Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats. Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 3/226 (1%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 S ++ L + R F + I + Q + D LI Sbjct: 22 AIDSEDDVRRALGRVSEGFGFRGFMVLAIPESGSHSLTAQALMTTWPMDFLRRYDSARLI 81 Query: 70 ETYGDDFLFHFNSGLLPIIWQS-IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + G + +P + + + ++ G+ ++ + G+ PV Sbjct: 82 D--GSPVIQRLRRSTIPFTYDAHLLARGRVDGKGEAAICVFEQANMPRGVYLPVHDAAGH 139 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + F + ++++ + + + + E+ + +L+ RE CL+ A G Sbjct: 140 RAAIAFGGDRSAVSDDEMQALNLWAGLLYSRLSEVRTRDRRGPGSLSRREIECLRWAAAG 199 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ E+A + LS +TVN YL AT KLD+VNR+Q +AKAIR G I Sbjct: 200 KTTVEMARIMALSEYTVNHYLNRATRKLDSVNRVQTVAKAIRAGLI 245 >gi|37223220|gb|AAQ90208.1| LuxR [Aliivibrio fischeri] gi|37223236|gb|AAQ90218.1| LuxR [Aliivibrio fischeri] gi|37223247|gb|AAQ90225.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 87/218 (39%), Gaps = 9/218 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K S +++ L + + Y + + I L NY + Sbjct: 19 KACRSNNDINQCLSDMTKMVHCE---YYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDA 75 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + NS PI W + V + S + ++ G +FP+ + Sbjct: 76 NLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNV-IKEAKTSGLITGFSFPIHTANNG 134 Query: 129 NGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183 G + F SE + + + A ++ ++ ++K + + +LT+RE CL Sbjct: 135 FGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLA 194 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 A +G +S +I++ LG S TV +L +A +KL+ NR Sbjct: 195 WACEGKSSWDISKILGCSERTVTFHLTNAQMKLNTTNR 232 >gi|37223233|gb|AAQ90216.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 145 bits (366), Expect = 4e-33, Method: Composition-based stats. Identities = 46/218 (21%), Positives = 87/218 (39%), Gaps = 9/218 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K S +++ L + + Y + + I L NY + Sbjct: 19 KACRSNNDINQCLSDMTKMVHCE---YYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDA 75 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + NS PI W + V + S + ++ G +FP+ + Sbjct: 76 NLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNV-IKEAKSSGLITGFSFPIHTANNG 134 Query: 129 NGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183 G + F SE + + + A ++ ++ ++K + + +LT+RE CL Sbjct: 135 FGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLA 194 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 A +G +S +I++ LG S TV +L +A +KL+ NR Sbjct: 195 WACEGKSSWDISKILGCSKRTVTFHLTNAQMKLNTTNR 232 >gi|27376173|ref|NP_767702.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27349312|dbj|BAC46327.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 65/212 (30%) Query: 23 LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82 ++ F + + +R + + ++ D + Sbjct: 29 ALEAAFGRFGFETIIVTGLPNPDQRFAQMVLAKRWPAGWFNLYTQNNYDRFDPVVRLCRQ 88 Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 + P W + +E S + G G P+ V L L Sbjct: 89 SVNPFEWSEAPYDAELEPSAAEVMNRAGDFRMSRGFIVPIHGLTGYEAAVSLGGVHLDLN 148 Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 H L + + LT RE + A G ++ EI E L ++ Sbjct: 149 PRSKPALHLMAMYGFDHIRRLLEPTPYPSTRLTPREREVISWASQGKSAWEIGEILHITQ 208 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T +L +A KL AVNR A+A AIR I Sbjct: 209 RTAEEHLATAARKLGAVNRTHAVALAIRHKII 240 >gi|37223228|gb|AAQ90213.1| LuxR [Aliivibrio logei] Length = 232 Score = 145 bits (366), Expect = 5e-33, Method: Composition-based stats. Identities = 47/218 (21%), Positives = 88/218 (40%), Gaps = 9/218 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K S +++ L + + Y + + I L NY + Sbjct: 19 KACRSNNDINQCLSDMTKMVHCE---YYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDA 75 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + NS PI W + V + S + ++ G +FP+ + Sbjct: 76 NLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNV-IKEAKTSGLITGFSFPIHTANNG 134 Query: 129 NGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183 G + F SE + + + A ++ ++ ++K + + +LT+RE CL Sbjct: 135 FGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLA 194 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 A +G +S +I++ LG SV TV +L +A +KL+ NR Sbjct: 195 WACEGKSSWDISKILGCSVRTVTFHLTNAQMKLNTTNR 232 >gi|150395666|ref|YP_001326133.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150027181|gb|ABR59298.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 286 Score = 145 bits (365), Expect = 6e-33, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 89/235 (37%), Gaps = 11/235 (4%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQL--ICELHNYDLDSGDIP 65 + + L+ + ++ + F + + ++ ++L + N + + Sbjct: 56 ASEIARLETQFDIIRYMRRITQIFGFKTF-LICSIPAVEVERLSATTVISNMPAELLNKY 114 Query: 66 NILIETYGDDFLFHFNSGLLPI-----IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + L + P W+ + ++ ++ E GLL F Sbjct: 115 DSLSMLRFSTGVRRLRETTTPFQILLEDWEKEGGKPDA-AADYFAMLRENGLLQAN--YF 171 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 PV G VI L +E V E+ + L+ERE Sbjct: 172 PVHDAEGGRGAVILMGPEAGLPMTAAMELQMIAIHVYNRLAEIGSVWKNTNTVLSEREIQ 231 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 CL G TS EIA LGLS HTVN YL T KLDAVNR QA+ KA++ GYI Sbjct: 232 CLNWTAAGKTSSEIAGILGLSEHTVNHYLNHVTKKLDAVNRTQAVVKAMKKGYIS 286 >gi|109896689|ref|YP_659944.1| LuxR family transcriptional regulator [Pseudoalteromonas atlantica T6c] gi|109698970|gb|ABG38890.1| transcriptional regulator, LuxR family [Pseudoalteromonas atlantica T6c] Length = 248 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 77/187 (41%), Gaps = 14/187 (7%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIES-SGQLSVRLEGGLL 113 + P +E Y D + + PI W + E S G L Sbjct: 58 SNYPEKWLEFYFKESEQQNDPVVKYIFEKQSPIRWDKLVEYQDFSSTKGLLVFEKAAAYG 117 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD------FLELFKKR 167 + G++ P+R + AN V+ A C+ T LE+ Sbjct: 118 LYNGLSIPIRSTSENIAVFSVAIDERSDANRVLDNAQMFCHTFATHLFERYVLLEISASD 177 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + R LT+RE CL A +G T+ EI++ + +S TV +LG++ KL A+NR A+A Sbjct: 178 ETDRRELTKRELECLFWACEGKTAWEISQIINVSERTVLFHLGNSNTKLGAINRQHAVAL 237 Query: 228 AIRFGYI 234 AI+ G I Sbjct: 238 AIKKGII 244 >gi|220920328|ref|YP_002495629.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219944934|gb|ACL55326.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 246 Score = 143 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 64/188 (34%), Gaps = 9/188 (4%) Query: 57 YDLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 ++ P + Y D + P W + + + + Sbjct: 58 PNMLFNMWPKDWLTHYDRVGHYRFDPVVRQCYRTTEPFAWSEVPFDADQPDRARRVMDEA 117 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKR 167 G PV G V E + L+ ++ H ++R Sbjct: 118 AAFGLGFGFCIPVHDALGFQGGVSLAGERIDLSPKIRRGLHMLGLYAWGAATRTTEDRRR 177 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S R L+ RE L A G T EEIA LG+S TV +L SA +K+ A N Q + + Sbjct: 178 SEPGRLLSARERDVLSWAAMGRTREEIATILGVSHETVATHLKSARIKIGARNTTQTVVE 237 Query: 228 AIRFGYIC 235 A+R I Sbjct: 238 ALRKREIT 245 >gi|325292093|ref|YP_004277957.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325059946|gb|ADY63637.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 246 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 54/234 (23%), Positives = 82/234 (35%), Gaps = 14/234 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ + L ++ +A F + + + C + P L Sbjct: 18 REIAGLNTQFDIFRFLKRLTEAWGFKAFMVLDLSAEMASELSQCTI------ITSWPAEL 71 Query: 69 IETYGDD-------FLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 ++ Y ++ + P + + + L + F Sbjct: 72 LQRYDEEGMLQRSLVMAQLKKSTTPFSVSLDFLVSGDENAPKKPVIGLFERFDMINSVWF 131 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 PV G V F+ L + E + E+ + L ERE Sbjct: 132 PVHDITTMRGAVSFSGNKTTLPTSQLAELFYISSHIFARLSEIRRLDLRVPETLNEREID 191 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL G TS EIAE + LS HT+N YL AT KLD VNR QA+AKA+R G I Sbjct: 192 CLNWTAAGKTSAEIAEIMMLSEHTINHYLNRATKKLDTVNRTQAVAKALRVGLI 245 >gi|260777849|ref|ZP_05886742.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC BAA-450] gi|260605862|gb|EEX32147.1| transcriptional activator protein luxR [Vibrio coralliilyticus ATCC BAA-450] Length = 240 Score = 143 bits (360), Expect = 2e-32, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 8/218 (3%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 L++ N + + + D + + N+ D + L Y D Sbjct: 22 RLLEQLNHIVNSEYFVLGVSFDPHIKNGRFIVVDNFPADCREDSCNLGLMYVDPICKFGA 81 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM- 140 S +P +W+S ++ I S S+ G+ GI+ P+ + G + F + ++ Sbjct: 82 SNCMPSVWES-SKQIDIHSQELFSLSHIQGIE--QGISIPIHGLNGEVGMLSFATSDVIA 138 Query: 141 --LANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAE 196 +V++ A ++ + L + LT RE CL A DG ++ EIA+ Sbjct: 139 YPTHTDVLLFAQLIVPLIVQNLSRLSHASQTEHSQAMLTNREIQCLTWAADGKSASEIAD 198 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + TV +L +A KL A NR QA+ +A+ G+I Sbjct: 199 IVDCTERTVKFHLSNACKKLGATNRCQAVTRALLGGHI 236 >gi|83859373|ref|ZP_00952894.1| Transcriptional regulatory protein, LuxR family protein [Oceanicaulis alexandrii HTCC2633] gi|83852820|gb|EAP90673.1| Transcriptional regulatory protein, LuxR family protein [Oceanicaulis alexandrii HTCC2633] Length = 241 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 19/235 (8%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 S S + L F + S D ++D + P + + Sbjct: 15 SDSNEALCHAFKAFVETFGVEAFGYQVLPSPFDAADT--------SFDFEYNTFPEAMQD 66 Query: 71 TYGDDFLFHFN-------SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 Y ++ L+ + + L P W +++ T Q L G PV Sbjct: 67 VYFEERLYDHDPVTSRAATALQPQFWFDVEQTTPGTRFSQRLFELLRQSGFVDGFTIPVF 126 Query: 124 LGFHKNGYVI---FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 + +V F+ F + A ++ + C ++ + + L + A +L+ERE Sbjct: 127 GPYGLAAFVACGRFSGAFNLTAIQLRM-LQLGCQELYSRTIMLRDYDAPAPPHLSEREVE 185 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 LQ G ++ IA LG+S HTV+ + A VKL+A NRI A+ KA+R G I Sbjct: 186 ILQWLARGKSNAVIAAILGVSPHTVDTIMRRAFVKLNASNRIAAVLKALRVGLIT 240 >gi|167564970|ref|ZP_02357886.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167572172|ref|ZP_02365046.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 238 Score = 142 bits (358), Expect = 4e-32, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 87/232 (37%), Gaps = 17/232 (7%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 ++ + L + ++ +NFA + + R C L + + + Sbjct: 16 ATCKKSLFEQTAYHVRQLGFKNFAYRHQIAGMSSSR-----CTLDGFPAEWRLRYDSADY 70 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + H +P+IW T ++ G++ PV Sbjct: 71 LSIDPVVQHCRCRTVPLIWSDDLYTT---GRAKIMRDEAKSYGLVYGLSCPVHDRGGTIS 127 Query: 131 YVIFTSEFLMLANEVIIEAHGA--------CYQVITDFLELFKKRSSAARNLTERETSCL 182 + ++ + + + + + + + L+ +R + +LT RE L Sbjct: 128 MLSMATDAPFERDTIDVLRLLSLSQLLASFVHAAMQELLDCRLRRQGSC-DLTARERESL 186 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Q AG G T+ EI++ LG+S TV +L +A K+ A NR QA+ A G I Sbjct: 187 QWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238 >gi|37223239|gb|AAQ90220.1| LuxR [Aliivibrio fischeri] gi|37223242|gb|AAQ90222.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 142 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 78/173 (45%), Gaps = 6/173 (3%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + NY + D + + S PI W +++++ + S + +R Sbjct: 61 IDNYPEKWRKYYDDAGLLKYDPVVDYSKSHHSPINWNVFEKKSIKKESPNV-IREAQESG 119 Query: 114 PFAGIAFPVRLGFHKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 G +FP+ + G + F S+ + + + + A +++ ++ ++K ++ + Sbjct: 120 LITGFSFPIHTANNGFGMLSFAHSDKDIYTDSLFLHASTNVPLMLSSLVDNYQKINTTHK 179 Query: 173 N----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE CL A +G ++ +I++ LG S TV +L + +KL+ NR Sbjct: 180 KSDSILTKREKECLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 232 >gi|254563872|ref|YP_003070967.1| N-acylhomoserine lactone LuxR family transcriptional regulator [Methylobacterium extorquens DM4] gi|254271150|emb|CAX27157.1| N-acylhomoserine lactone transcriptional regulator, LuxR family [Methylobacterium extorquens DM4] Length = 165 Score = 141 bits (356), Expect = 6e-32, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 65/164 (39%) Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 Y D + S W I+ V++ + + G G P+ + G Sbjct: 1 MYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLATLEEERG 60 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + F L ++ V+ L + S LT RE LQ +G T Sbjct: 61 GLTFAGPQLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGKT 120 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI E +G+S H V+ +L SA VKL V+R QA+A+ R G I Sbjct: 121 DWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 164 >gi|37223202|gb|AAQ90196.1| LuxR [Vibrio fischeri ES114] Length = 230 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 76/173 (43%), Gaps = 6/173 (3%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + NY + D + + S PI W +++T+ + S + ++ Sbjct: 59 IDNYPEKWRKYYDDAGLLEYDPVVDYSKSHHSPINWNVFEKKTIKKESPNV-IKEAQESG 117 Query: 114 PFAGIAFPVRLGFHKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RS 168 G +FP+ + G + F S+ + + + + A ++ ++ ++K R Sbjct: 118 LITGFSFPIHTASNGFGMLSFAHSDKDIYTDSLFLHASTNVPLMLPSLVDNYQKINTTRK 177 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LT+RE CL A +G ++ +I++ LG S TV +L + +KL+ NR Sbjct: 178 KSDSILTKREKECLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 230 >gi|37223211|gb|AAQ90202.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 140 bits (354), Expect = 1e-31, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 76/173 (43%), Gaps = 6/173 (3%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + NY + D + + S PI W +++T+ + S + ++ Sbjct: 61 IDNYPEKWRKYYDDAGLLEYDPVVDYSKSHHSPINWNVFEKKTIKKESPNV-IKEAQESG 119 Query: 114 PFAGIAFPVRLGFHKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RS 168 G +FP+ + G + F S+ + + + + A ++ ++ ++K R Sbjct: 120 LITGFSFPIHTASNGFGMLSFAHSDKDIYTDSLFLHASTNVPLMLPSLVDNYQKINTTRK 179 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LT+RE CL A +G ++ +I++ LG S TV +L + +KL+ NR Sbjct: 180 KSDSILTKREKECLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 232 >gi|159184428|ref|NP_353732.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139741|gb|AAK86517.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 201 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 50/180 (27%), Positives = 72/180 (40%), Gaps = 8/180 (4%) Query: 63 DIPNILIETYGDD-------FLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLP 114 P L++ Y ++ + +P + + + L Sbjct: 21 SWPAELLQRYDEEGMLQNSRVMAQLKKSTIPFSVSMDFLVNGEEHIANKTVIGLFERFEM 80 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 + FPV + G + F+ +L + E V E+ + L Sbjct: 81 VNSVWFPVHDVTMRRGAISFSGNKAVLPTTRLAELLYISCHVFARLSEIRRLDLRVPETL 140 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +ERE CL G TS EIAE + LS HT+N YL AT KLD VNR QA+AKA+R G I Sbjct: 141 SEREIDCLNWTAAGKTSAEIAEIMMLSEHTINHYLNRATKKLDTVNRTQAVAKALRVGLI 200 >gi|167578890|ref|ZP_02371764.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167616988|ref|ZP_02385619.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257140903|ref|ZP_05589165.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] Length = 238 Score = 140 bits (353), Expect = 2e-31, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 17/232 (7%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 ++ + L + ++ +NFA S R C L + + + Sbjct: 16 ATCKKSLFEQTAYHVRQLGFKNFAYRHQISGAASSR-----CMLDGFPTEWRLRYDAADY 70 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + H +P+IW +E +L G++ PV Sbjct: 71 LSIDPVVQHCRCRTVPLIWH---DELYTTGRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 127 Query: 131 YVIFTSE--FLMLANEVIIEAHGA------CYQVITDFLELFKKRSSAARNLTERETSCL 182 + ++ F AN+++ + + + + L+ +R + +LT RE L Sbjct: 128 MLSMATDDPFEHDANDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSC-DLTARERESL 186 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Q AG G T+ EI++ LG+S TV +L +A K+ A NR QA+ A G I Sbjct: 187 QWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238 >gi|240141366|ref|YP_002965846.1| N-acylhomoserine lactone transcriptional regulator, LuxR family [Methylobacterium extorquens AM1] gi|240011343|gb|ACS42569.1| N-acylhomoserine lactone transcriptional regulator, LuxR family [Methylobacterium extorquens AM1] Length = 165 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 65/164 (39%) Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 Y D + S W I+ V++ + + G G P+ + G Sbjct: 1 MYTDPVVQATLSSTTGFRWSEIEPAGVLDPRSRQVMNEAGEFGLGDGFTVPLATLEEERG 60 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 + F L ++ V+ L + S LT RE LQ +G T Sbjct: 61 GLTFAGRQLDISPGQRGMLTLLASYVVGQTLLIDNGPSERRMGLTPRERESLQWVAEGKT 120 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI E +G+S H V+ +L SA VKL V+R QA+A+ R G I Sbjct: 121 DWEIGELMGISRHGVDFHLRSARVKLGCVSRTQAVAEGFRRGLI 164 >gi|37223214|gb|AAQ90204.1| LuxR [Aliivibrio fischeri] Length = 232 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 79/173 (45%), Gaps = 6/173 (3%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + NY + D + + S PI W +++++ + S + ++ Sbjct: 61 IDNYPEKWRKYYDEAGLLEYDPVVNYSKSHHSPINWNVFEKKSIKKESPNV-IKEAQASG 119 Query: 114 PFAGIAFPVRLGFHKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 G +FP+ + G + F S+ + + + + A+ ++ ++ ++K ++ + Sbjct: 120 LITGFSFPIHTANNGFGMLSFAHSDKDIYTDSLFLHANTNVPLMLPSLVDSYQKINTTHK 179 Query: 173 N----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RET CL A +G ++ +I++ LG S TV +L + +KL+ NR Sbjct: 180 KSDSILTKRETECLAWASEGKSTWDISKILGCSERTVTFHLTNTQMKLNTTNR 232 >gi|163758577|ref|ZP_02165664.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162283867|gb|EDQ34151.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 237 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 55/228 (24%), Positives = 87/228 (38%), Gaps = 3/228 (1%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K +++ EL+ L + + R F+++ I + F R L N + + + L Sbjct: 12 KTATTEHELAVSLQALTSEFDFRFFSIFDIPA--TFSDRLSKHIRLSNLPSEYIEEYDSL 69 Query: 69 IETYGDDFLFHFNSGLLPI-IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 P+ + + + Q+ + G+ FPV Sbjct: 70 NLLSNSSVFAMLRQSTAPMTRFLDLAVKERPTEEQQVMRAVFEKHNMTMGVYFPVHGSNG 129 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 + + F L+ + ++ K + A +T RE L A + Sbjct: 130 RRAAMAFYGTRPALSFAETGVLGLCVLHAFDAYSKMTNKTGTKANGITTRELEVLHWAAN 189 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G TS EIA L LS HTVN Y+ SA KLD VNR Q +AKA+R I Sbjct: 190 GKTSTEIAAILSLSDHTVNTYMNSAMRKLDCVNRTQLVAKALRLHLIS 237 >gi|76819232|ref|YP_337020.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 1710b] gi|76583705|gb|ABA53179.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] Length = 394 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 17/232 (7%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 ++ + L + ++ +NFA S R C L + + + Sbjct: 172 ATCKKSLFEQTAYHVRQLGFKNFAYRHQISGAASSR-----CMLDGFPAEWRLRYDAADY 226 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + H +P+IW T S +L G++ PV Sbjct: 227 LSIDPVVQHCRCRTVPLIWHDDLYTT---SRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 283 Query: 131 YVIFTSE--FLMLANEVIIEAHGA------CYQVITDFLELFKKRSSAARNLTERETSCL 182 + ++ F A++++ + + + + L+ +R + +LT RE L Sbjct: 284 MLSMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSC-DLTARERESL 342 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Q AG G T+ EI++ LG+S TV +L +A K+ A NR QA+ A G I Sbjct: 343 QWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 394 >gi|53717016|ref|YP_106048.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei ATCC 23344] gi|67643368|ref|ZP_00442115.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|124382942|ref|YP_001025964.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10229] gi|126445405|ref|YP_001061548.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 668] gi|126446264|ref|YP_001078053.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10247] gi|126457742|ref|YP_001074487.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 1106a] gi|134284195|ref|ZP_01770887.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|167003599|ref|ZP_02269385.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|167741352|ref|ZP_02414126.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167818528|ref|ZP_02450208.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167826910|ref|ZP_02458381.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|167848430|ref|ZP_02473938.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167896980|ref|ZP_02484382.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167905359|ref|ZP_02492564.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|167921599|ref|ZP_02508690.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|217423225|ref|ZP_03454727.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226194550|ref|ZP_03790147.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237507990|ref|ZP_04520705.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242313995|ref|ZP_04813012.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254176241|ref|ZP_04882899.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254189375|ref|ZP_04895885.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254195237|ref|ZP_04901665.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|254200901|ref|ZP_04907266.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|254204867|ref|ZP_04911220.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|254262915|ref|ZP_04953780.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254299430|ref|ZP_04966879.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|254358982|ref|ZP_04975254.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|52422986|gb|AAU46556.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|126224896|gb|ABN88401.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] gi|126231510|gb|ABN94923.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|126239118|gb|ABO02230.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10247] gi|134244398|gb|EBA44504.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|147748513|gb|EDK55588.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|147754453|gb|EDK61517.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|148028169|gb|EDK86129.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|156105362|gb|ABU49180.1| BpsR4 [Burkholderia pseudomallei] gi|157809517|gb|EDO86687.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157937053|gb|EDO92723.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|160697283|gb|EDP87253.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|169651984|gb|EDS84677.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|217394133|gb|EEC34153.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225933378|gb|EEH29368.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|235000195|gb|EEP49619.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238524705|gb|EEP88137.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|242137234|gb|EES23637.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|243060902|gb|EES43088.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|254213917|gb|EET03302.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|261827048|gb|ABM99276.2| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] Length = 238 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 17/232 (7%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 ++ + L + ++ +NFA S R C L + + + Sbjct: 16 ATCKKSLFEQTAYHVRQLGFKNFAYRHQISGAASSR-----CMLDGFPAEWRLRYDAADY 70 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + H +P+IW T S +L G++ PV Sbjct: 71 LSIDPVVQHCRCRTVPLIWHDDLYTT---SRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 127 Query: 131 YVIFTSE--FLMLANEVIIEAHGA------CYQVITDFLELFKKRSSAARNLTERETSCL 182 + ++ F A++++ + + + + L+ +R + +LT RE L Sbjct: 128 MLSMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSC-DLTARERESL 186 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Q AG G T+ EI++ LG+S TV +L +A K+ A NR QA+ A G I Sbjct: 187 QWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238 >gi|167913657|ref|ZP_02500748.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 112] Length = 238 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 17/232 (7%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 ++ + L + ++ +NFA S R C L + + + Sbjct: 16 ATCKKSLFEQTAYHVRQLGFKNFAYRHQISGAASSR-----CMLDGFPAEWRLRYDAADY 70 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + H +P+IW T S +L G++ PV Sbjct: 71 LSIDPVVQHCRCRTVPLIWHDDLYTT---SRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 127 Query: 131 YVIFTSE--FLMLANEVIIEAHGA------CYQVITDFLELFKKRSSAARNLTERETSCL 182 + ++ F A++++ + + + + L+ +R + +LT RE L Sbjct: 128 MLSMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSC-DLTARERESL 186 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Q AG G T+ EI++ LG+S TV +L +A K+ A NR QA+ A G I Sbjct: 187 QWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 238 >gi|53721347|ref|YP_110332.1| LuxR family transcriptional regulator [Burkholderia pseudomallei K96243] gi|52211761|emb|CAH37760.1| putative LuxR-family transcriptional regulator [Burkholderia pseudomallei K96243] Length = 234 Score = 139 bits (351), Expect = 3e-31, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 17/232 (7%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 ++ + L + ++ +NFA S R C L + + + Sbjct: 12 ATCKKSLFEQTAYHVRQLGFKNFAYRHQISGAASSR-----CMLDGFPAEWRLRYDAADY 66 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + H +P+IW T S +L G++ PV Sbjct: 67 LSIDPVVQHCRCRTVPLIWHDDLYTT---SRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 123 Query: 131 YVIFTSE--FLMLANEVIIEAHGA------CYQVITDFLELFKKRSSAARNLTERETSCL 182 + ++ F A++++ + + + + L+ +R + +LT RE L Sbjct: 124 MLSMATDDPFEHDASDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSC-DLTARERESL 182 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Q AG G T+ EI++ LG+S TV +L +A K+ A NR QA+ A G I Sbjct: 183 QWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 234 >gi|144900185|emb|CAM77049.1| regulatory protein, LuxR:Autoinducer-binding [Magnetospirillum gryphiswaldense MSR-1] Length = 242 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 80/231 (34%), Gaps = 15/231 (6%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 + +P L + A P R + + D P + Y Sbjct: 17 RADTAPALMSELKSALVHWGFPHMACGAFGEPERP---LDDMSVPAVVVDYPEEWQKYYF 73 Query: 74 -------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + +P W +++ T E GL GI PV Sbjct: 74 EKNYVTIDPVITRACQAYVPYRWDQLRDLTN-PQKRMFKEATEAGL--RHGITVPVHGPN 130 Query: 127 HKNGYVIFTSEFLMLAN-EVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 S + + + A+ QV + + + SA +LT RE CL Sbjct: 131 GSIFVASVASPHTDIDHLRSLSVANVLVTQVYSVLVGMRHPGAPSAPVSLTARERECLIW 190 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + G +S +I L +S +TVN +L +A KL A R+ AI KAIR G I Sbjct: 191 SARGKSSWDIGVILNISDNTVNFHLKNAMGKLKASTRVLAIVKAIRMGLIV 241 >gi|222149185|ref|YP_002550142.1| transcriptional regulator protein [Agrobacterium vitis S4] gi|221736170|gb|ACM37133.1| transcriptional regulator protein [Agrobacterium vitis S4] Length = 243 Score = 139 bits (350), Expect = 3e-31, Method: Composition-based stats. Identities = 43/201 (21%), Positives = 68/201 (33%), Gaps = 7/201 (3%) Query: 42 LDFPRRQQLICELHNYDLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQE 94 L FP ++ + D P+ Y D + H S +W + Sbjct: 43 LGFPPEIGMLPSQQMQGILLADWPDEWSHLYFRDNLAFQDPAIRHIVSSEPSFVWSDFSK 102 Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 I + + G P+ + V F + + + Sbjct: 103 TLPISRDEKWLMDQAKEFFVSNGFTLPILSLDGRRAGVTFAGSDIDDSPQARTGMALIAS 162 Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 V LEL+ LT RE + +G T EI+ G+S V ++G+ + Sbjct: 163 LVFARALELYGANQKQTTRLTPREREVIGWIANGKTDWEISVIFGVSEKAVTKHVGNIMM 222 Query: 215 KLDAVNRIQAIAKAIRFGYIC 235 KL AV+R AIA+A R IC Sbjct: 223 KLGAVSRSHAIAEAFRQKLIC 243 >gi|240142370|ref|YP_002966880.1| LuxR type transcriptional regulator [Methylobacterium extorquens AM1] gi|240012314|gb|ACS43539.1| LuxR type transcriptional regulator [Methylobacterium extorquens AM1] Length = 242 Score = 138 bits (349), Expect = 4e-31, Method: Composition-based stats. Identities = 37/215 (17%), Positives = 72/215 (33%), Gaps = 3/215 (1%) Query: 22 HLIQNRIKARNFALYTINSALDFPR-RQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 H ++ + F + + + L P R + + + Y D + Sbjct: 27 HSVERILAEFGFE-HFVITGLPNPNDRLDQVLLIRRLPAGWFEHYARHNYMYLDPVFRNC 85 Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 + P W + E ++ G + P+ + Sbjct: 86 RATTSPFDWGEAPYDPETEPGAIEVMQRATDFGMARGFSVPIHGPEGCEACFSMSGRNPD 145 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLG 199 L H ++ ++ + LT+RE L A G +S + AE + Sbjct: 146 LTGRTKPAVHMIAMYAFERARQVGRRPAKPPSNPLTQREQEVLTWAALGKSSRDTAEIMQ 205 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ T A+ +AT KL A NR QA+ +A++ +I Sbjct: 206 ITERTALAHAVNATHKLGAANRTQAVVRAMQSKFI 240 >gi|90023140|ref|YP_528967.1| LuxR family transcriptional regulator [Saccharophagus degradans 2-40] gi|89952740|gb|ABD82755.1| transcriptional regulator, LuxR family [Saccharophagus degradans 2-40] Length = 247 Score = 138 bits (349), Expect = 5e-31, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 13/186 (6%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLL 113 + P+ + Y D + + I W+ + + E +++ G+ + Sbjct: 58 SNYPDEWFKNYFEEGMQRHDPVVRYCMQNTSAIRWRQLMDLEHYVDAIGEKIMIRASESG 117 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELF-KKRS 168 G++ P++ + S N+ I A QV + L K Sbjct: 118 LCDGLSIPIKAPSGEIAIFSLASNREEGLNQRINACLPFAQSFGTQVFECYSALMLKLAQ 177 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + +LT RE L A +G T+ EI++ L +S TV +L SAT KL AVNR A+AKA Sbjct: 178 NKQTHLTAREKESLFWACEGKTTWEISKILDVSERTVIFHLSSATSKLGAVNRQHAVAKA 237 Query: 229 IRFGYI 234 I G I Sbjct: 238 ILSGLI 243 >gi|163761139|ref|ZP_02168216.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162281690|gb|EDQ31984.1| probable transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 246 Score = 138 bits (348), Expect = 5e-31, Method: Composition-based stats. Identities = 54/231 (23%), Positives = 91/231 (39%), Gaps = 11/231 (4%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 S ++ + +++ + F +++ L P ++ ++ P LI Sbjct: 17 ISKIRTTFDAIQVLRKTCLSYGFRYFSV---LTIPAMVSESAQVMSHISVISSWPPELIA 73 Query: 71 TYGD-------DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGLLPFAGIAFPV 122 Y L + P++++ ++ + + Q S + L G+ FPV Sbjct: 74 DYDRLELGKNSPVLERLRKQITPLLFEVENIDSERDGAEQASAKELFTRFGVTMGVYFPV 133 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 + G + V F L+ + ++ ++ +A L RET L Sbjct: 134 QDGRGQRFAVCFMGARKPLSATELPSLAMFATLLVDQLSQITANEDTAKLVLNARETEVL 193 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 Q +G TS EIA GLS HTVN Y AT KL NR QA+ +AIR G Sbjct: 194 QWTAEGKTSAEIARITGLSEHTVNHYATIATQKLGCSNRTQAVVQAIRLGL 244 >gi|260461224|ref|ZP_05809472.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319785401|ref|YP_004144877.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032761|gb|EEW34024.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317171289|gb|ADV14827.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 248 Score = 138 bits (348), Expect = 6e-31, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 77/214 (35%), Gaps = 10/214 (4%) Query: 30 ARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY-------GDDFLFHFNS 82 A NF I P ++ L + + P+ E Y D + Sbjct: 34 ALNFDCPWIAYGPLAPEQRVLKPTRPDSAMMWN-YPDEWQERYLKMGYAKIDPLIKKGRK 92 Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT-SEFLML 141 G+ P W + + + + G +G+ P+ + F S L Sbjct: 93 GVGPFRWSEVYTHESTTENERRVLDEAGTFGLKSGVTVPLHGPAGSFKLMCFAKSADCEL 152 Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 N I A Q +L +RSS A +++RE C+ G TS EI LG Sbjct: 153 ENRAITYLQIAAVQFHLRVAKLGTQRSSEHAYKISDRERECIHWISKGKTSGEIGTILGR 212 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S +TV+ ++ + KLD R AKA+ G I Sbjct: 213 SQNTVDFHVKNVMRKLDTTRRTALAAKAVELGII 246 >gi|83716463|ref|YP_440275.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650288|gb|ABC34352.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 425 Score = 137 bits (346), Expect = 9e-31, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 17/232 (7%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 ++ + L + ++ +NFA S R C L + + + Sbjct: 203 ATCKKSLFEQTAYHVRQLGFKNFAYRHQISGAASSR-----CMLDGFPTEWRLRYDAADY 257 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + H +P+IW +E +L G++ PV Sbjct: 258 LSIDPVVQHCRCRTVPLIWH---DELYTTGRAKLMRDEAKSYGLVYGLSCPVHDRSGAIS 314 Query: 131 YVIFTSE--FLMLANEVIIEAHGA------CYQVITDFLELFKKRSSAARNLTERETSCL 182 + ++ F AN+++ + + + + L+ +R + +LT RE L Sbjct: 315 MLSMATDDPFEHDANDILRLLSLSQLLASFVHAAMHELLDCRLRRQGSC-DLTARERESL 373 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Q AG G T+ EI++ LG+S TV +L +A K+ A NR QA+ A G I Sbjct: 374 QWAGRGKTAWEISKILGISERTVVFHLSNAARKIGANNRAQAVVIASARGLI 425 >gi|302878668|ref|YP_003847232.1| transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] gi|302581457|gb|ADL55468.1| transcriptional regulator, LuxR family [Gallionella capsiferriformans ES-2] Length = 243 Score = 137 bits (346), Expect = 1e-30, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 68/192 (35%), Gaps = 20/192 (10%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG- 110 + + Y D H S P+IW + + Q + E Sbjct: 53 FQQSNYSADWLNKYTAEKLHHVDPTFSHCISKSTPLIWS----PKIFSAQKQKEMYEEAC 108 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSE------FLMLANEVIIEAHGACYQVITDFLELF 164 G +G+ P+ + G V F S+ F AN + E ++ L+ Sbjct: 109 GYGVKSGVTLPIHGAKGELGIVCFVSDTKPDKRFHRDANHHLPELACFRDFILESSLQFM 168 Query: 165 KKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 K + T RE CL+ + G +S EI L + TVN + + K +R Sbjct: 169 KPSRQVENPISVTHRELECLKWSASGKSSWEIGHILNCTEATVNFHFSNIRRKFSTTSRQ 228 Query: 223 QAIAKAIRFGYI 234 QAI KAI G I Sbjct: 229 QAIVKAISLGLI 240 >gi|116254365|ref|YP_770203.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115259013|emb|CAK10122.1| LuxR-family regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 251 Score = 137 bits (345), Expect = 1e-30, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 73/228 (32%), Gaps = 18/228 (7%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-------DDF 76 ++ + F Y + P+ +G P Y D Sbjct: 26 LEQILHGCGFEYYGLP--RHLPQTPMQQNPEPWAAALAGRWPEQWPHIYTAKKYALIDPM 83 Query: 77 LFHFNSGLLPIIWQSIQ---EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + + P W+ + + + G G FP+ + Sbjct: 84 VRYLAHAQRPFRWREAMAAFRKDAYHRRMEQMMVDAFGHGLEDGYIFPIHGRNGILASLS 143 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS------SAARNLTERETSCLQLAGD 187 + + L+ I + L+L + A LT RE L + Sbjct: 144 LAGKPIELSPVEIALLEAVARKAFWRLLDLKGEAQALETVLPADTPLTRREMEILHYLAE 203 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G TS EI++ L +S HTV+ Y+ KL A NR QA+A A R G I Sbjct: 204 GMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAVALAFRHGLIS 251 >gi|330941017|gb|EGH43939.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 262 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 82/227 (36%), Gaps = 22/227 (9%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY-------GD 74 ++ ++ FA Y I+ + P + P ++ Y D Sbjct: 19 RHLRKVMRQLGFAHYLISLSPMRPWTG------NPLAGVITTFPRTWLDCYCCDGLLDID 72 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI- 133 L H L+P+ W + R E GL G++ P+R G + Sbjct: 73 PILKHCRQELVPMFWAQQGRRARGRTRHFWQRREEHGL--CHGLSIPLRYER-LRGTLSV 129 Query: 134 -FTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 F E A+ +++ ++ + +LT RE CL A G Sbjct: 130 AFDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPRELECLYWASAG 189 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 TS EI+ L S TV+ +L +A KL +V+R QA+ A G + Sbjct: 190 KTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLLA 236 >gi|289628275|ref|ZP_06461229.1| putative LuxR-family regulatory protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 262 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 82/227 (36%), Gaps = 22/227 (9%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY-------GD 74 ++ ++ FA Y I+ + P + P ++ Y D Sbjct: 19 RHLRKVMRQLGFAHYLISLSPMRPWTG------NPLAGVITTFPRTWLDCYCCDGLLDID 72 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI- 133 L H L+P+ W + R E GL G++ P+R G + Sbjct: 73 PILKHCRQELVPMFWAQQGRRARGRTRHFWQRREEHGL--CHGLSIPLRYER-LRGTLSV 129 Query: 134 -FTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 F E A+ +++ ++ + +LT RE CL A G Sbjct: 130 AFDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPRELECLYWASAG 189 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 TS EI+ L S TV+ +L +A KL +V+R QA+ A G + Sbjct: 190 KTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLLA 236 >gi|241206852|ref|YP_002977948.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860742|gb|ACS58409.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 251 Score = 137 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 76/227 (33%), Gaps = 18/227 (7%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-------DDF 76 ++ ++ F Y + L QQ +G P + Y D Sbjct: 26 LEQILRGCGFEYYGLPHHLPQSPLQQ--NPEPWAAALAGRWPEQWPQIYAAKKYALIDPM 83 Query: 77 LFHFNSGLLPIIWQSIQ---EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + + P W+ + + + G G FP+ G + Sbjct: 84 VRYLAHAQRPFRWREAMAAFRKDAYHRRMEQMMVDAFGHGLEDGYIFPIHGRSGILGSLS 143 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS------SAARNLTERETSCLQLAGD 187 + + L+ I + L+L + A LT RE L + Sbjct: 144 LAGKPIELSPVEIALLEAVARKAFWRLLDLKGEAQALETVLPADTPLTRREMEILHYLAE 203 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EI++ L +S HTV+ Y+ KL A NR A+A A R G I Sbjct: 204 GMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQHAVALAFRHGLI 250 >gi|167736311|dbj|BAG07412.1| LuxR-like protein [Gluconacetobacter polyoxogenes] Length = 236 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 82/231 (35%), Gaps = 15/231 (6%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYD-----LDSGDIPNILIE 70 +L +LH ++N + +++ L I EL+ + P + Sbjct: 7 DLLAKLHDLENAATKHDLLSIYLDAVLSVGNVHVTIVELNRIEDPKENFIHVGYPTEWVN 66 Query: 71 TY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 Y D + P W I+ I S + +R G+ PV Sbjct: 67 FYIENNYIVSDPIIKKSRFMSHPYFWHEIRN---INKSEKKIIRDVSEFGIKKGLTIPVH 123 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + F + E+ + I + +L + + LT RE CL+ Sbjct: 124 THDRLIYAICFAFTDKNVDQEIELYLRALSNFFIAGYKKLDEPTDMSPPILTPREKECLR 183 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S E +G+S TVN ++ +A +KL NRI + +AI G I Sbjct: 184 WTAKGKSSWETGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAICAGLI 234 >gi|59940055|gb|AAX12566.1| LuxR-type transcriptional regulator [Aeromonas sp. 'CDC 2478-85'] Length = 260 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 14/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR-LEGGL 112 P+ ++ Y D + LP+ W +E G V L Sbjct: 56 FNQCPDSWVQAYTANHMLACDPIIQLARKQTLPLYWNRREERGRFLQEGSRDVMGLAAEF 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 GI+FP+ G + F + + L+ ++ ++ ++ + + + Sbjct: 116 GLRNGISFPLHRAAGGKGIMSFIISERASRDLLLESSPLLSWMSNYIFEAAIRIVRVSLR 175 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RET CL LA +G TS EIA LG++ VN +L T K ++NR QAI Sbjct: 176 EDDPQEALTARETECLFLATEGKTSGEIACILGITERPVNYHLNQVTRKTGSMNRCQAII 235 Query: 227 KAIRFGYI 234 K + G + Sbjct: 236 KGVSSGIL 243 >gi|330870194|gb|EGH04903.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 280 Score = 136 bits (343), Expect = 2e-30, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 82/227 (36%), Gaps = 22/227 (9%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY-------GD 74 ++ ++ FA Y I+ + P + P ++ Y D Sbjct: 37 RHLRKVMRQLGFAHYLISLSPMRPWTG------NPLAGVITTFPRTWLDCYCCDGLLDID 90 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI- 133 L H L+P+ W + R E GL G++ P+R G + Sbjct: 91 PILKHCRQELVPMFWAQQGRRARGRTRHFWQRREEHGL--CHGLSIPLRYER-LRGTLSV 147 Query: 134 -FTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 F E A+ +++ ++ + +LT RE CL A G Sbjct: 148 AFDGTGVHEDDGFAHPAAALLFMLVPYLVSGLGRRWQTDNPCNDDLTPRELECLYWASAG 207 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 TS EI+ L S TV+ +L +A KL +V+R QA+ A G + Sbjct: 208 KTSWEISHILTRSERTVDFHLLNARRKLGSVSRQQAVGSAAARGLLA 254 >gi|331092883|ref|ZP_04586362.2| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331125377|ref|ZP_04592751.2| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020753|gb|EGI00810.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027159|gb|EGI07214.1| putative LuxR family regulatory protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 235 Score = 136 bits (342), Expect = 3e-30, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 81/188 (43%), Gaps = 20/188 (10%) Query: 63 DIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 P ++ Y D + H +P+ W + S R GL Sbjct: 52 TYPLDWLKCYEDENFILIDPIVKHCRRHFMPLFWGGARRRARGRSKEFWRARERHGLS-- 109 Query: 116 AGIAFPVR----LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 G++ P+R LG + + ++E ++ + G + ++ LE ++ A Sbjct: 110 QGVSIPLRCREMLGSFNVAHPVDSNEEF---DDEVNVTFGVLFMLVPFLLEGSQRHLKAP 166 Query: 172 R----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT RET L+ +G G T+ EI+ LG S TVN ++ +A+ KL A NR+QA+ Sbjct: 167 GEQSCSLTMRETEVLKWSGAGKTTWEISRILGCSERTVNFHIANASRKLGASNRLQAVGM 226 Query: 228 AIRFGYIC 235 A+ +I Sbjct: 227 ALAQEFIS 234 >gi|190893853|ref|YP_001980395.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190699132|gb|ACE93217.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 251 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 76/229 (33%), Gaps = 20/229 (8%) Query: 24 IQNRIKARNFALYTINSALD-FPRRQQLICELHNYDLDSGDIPNILIETYG-------DD 75 ++ + F Y + L P +Q +G P ++ Y D Sbjct: 26 LEQVLHGSGFEYYGLLRHLQQTPAQQNSELRAAPL---AGRWPERWLQIYAAKKYIRIDP 82 Query: 76 FLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 + + P W+ + + G G FP+ G + Sbjct: 83 MVRYLTHAQRPFRWRESMAAFNSDAHRRRMEQMMVDAFGHGLEDGYLFPIHGRNGILGSL 142 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS------SAARNLTERETSCLQLAG 186 + L+ I + LEL + A LT RE L Sbjct: 143 SLGGRPIELSPVEIALLEAVARKTFWRLLELTGEAEALETVLPAETPLTRREMEILHYLA 202 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G TS EI++ L +S HTV+ Y+ KL A NR QA+A A R G I Sbjct: 203 EGMTSMEISKMLKISNHTVDWYMNGLQGKLKAKNRQQAVALAFRHGLIS 251 >gi|86747544|ref|YP_484040.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86570572|gb|ABD05129.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 242 Score = 135 bits (341), Expect = 3e-30, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 83/245 (33%), Gaps = 22/245 (8%) Query: 3 ENTLTGKKSSSLQELSPRLHL------IQNRIKARNFALYTINSALDFPRRQQLICELHN 56 E+ L G+++ + + RL ++ I + F+ Y + + L P L N Sbjct: 5 ESHLWGRRALEFVDAADRLDAPSLVRQFESHIASAGFSAYIMAA-LPAPGAGLAELTLAN 63 Query: 57 YDLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 P E Y D H + + P W + + + + Sbjct: 64 ------GWPRGWFELYVGRNYMAVDPVPRHGAATVQPFEWSDAPYDRKRDRAAHQVMTDA 117 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 G P+ + E L L + + Sbjct: 118 AEFGLVRGYCIPLHYDDGG-AMISMAGEAPDLDPTAKGAMQLIGVYAHNRLRSLNRPKP- 175 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R LT RE L A G T+ EI+ L ++ TV +L A+ KL+AVNR A+AKA+ Sbjct: 176 QRRLLTSRECEILSWAAQGKTAWEISMILRIAERTVKFHLIEASRKLNAVNRTAAVAKAL 235 Query: 230 RFGYI 234 G I Sbjct: 236 SLGLI 240 >gi|167736315|dbj|BAG07414.1| AHL-dependent transcriptional regulator [Gluconacetobacter intermedius] Length = 236 Score = 135 bits (340), Expect = 5e-30, Method: Composition-based stats. Identities = 48/231 (20%), Positives = 80/231 (34%), Gaps = 15/231 (6%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYD-----LDSGDIPNILIE 70 +L +LH ++N + +++ L I EL+ + P + Sbjct: 7 DLLAKLHDLENAATKHDLLSIYLDAVLSVGNVHVTIVELNRIEDPKENFIHVGYPTEWVN 66 Query: 71 TY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 Y D + P W I+ E +R G+ PV Sbjct: 67 FYIENNYIVSDPIIKKSRFMSHPYFWHEIKNINKAEKK---IIRDVSEFGIKKGLTIPVH 123 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + F + E+ + IT + +L + + LT RE CL Sbjct: 124 THDRVIYAICFAFTDKNIDREIELYLRALSNFFITGYKKLDEPADMSLPILTPREKECLT 183 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S E +G+S TVN ++ +A +KL NRI + +AI G I Sbjct: 184 WTAKGKSSWETGMIVGVSERTVNFHINNALLKLKCTNRIMGVVRAICAGLI 234 >gi|239831035|ref|ZP_04679364.1| Transcriptional activator protein solR [Ochrobactrum intermedium LMG 3301] gi|239823302|gb|EEQ94870.1| Transcriptional activator protein solR [Ochrobactrum intermedium LMG 3301] Length = 238 Score = 135 bits (339), Expect = 6e-30, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 11/186 (5%) Query: 59 LDSGDIPNILIETYGD-------DFLFHFNSGLLPIIWQS--IQEETVIESSGQ-LSVRL 108 L G +P + Y D + + + P++W S E I + Q +R+ Sbjct: 54 LSFGSLPQEWTDHYADKKYADIDPLVRKALNSIEPLVWSSKLFAEAPQIWTDAQRFGIRV 113 Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 +A L F ++G + + E ML ++ A+ + L++ Sbjct: 114 GISQPCWAAQGVFGMLSFLRSGPALSSGEISMLRRQLQTVANMLHLAMYEH-LDVPTMNC 172 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + NLT RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA Sbjct: 173 VSEVNLTMREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 232 Query: 229 IRFGYI 234 FG + Sbjct: 233 RTFGLL 238 >gi|86359580|ref|YP_471472.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86283682|gb|ABC92745.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 251 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 79/229 (34%), Gaps = 20/229 (8%) Query: 24 IQNRIKARNFALYTINSALDF-PRRQQLICELHNYDLDSGDIPNILIETYG-------DD 75 ++ + F Y + L P +Q + +G P ++ Y D Sbjct: 26 LEQVLHGSGFEYYGLLRHLQQNPAQQNIELRAAPL---AGRWPEQWLQIYAAKKYVRIDP 82 Query: 76 FLFHFNSGLLPIIWQSIQ---EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 + + P W+ + + + + G G FP+ G + Sbjct: 83 MVRYLAHAQRPFRWRESMAAFDGDAHQRRMEQMMVDAFGHGLEDGYLFPIHGRNGILGSL 142 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS------SAARNLTERETSCLQLAG 186 + + L+ I + L+L + LT RE L Sbjct: 143 TLGGKPIDLSPVEIALLEAVARKSFWRLLDLTGEAEALETVLPTETPLTRREMEILHYLA 202 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G TS EI++ L +S HTV+ Y+ KL A NR QA+A A R G I Sbjct: 203 EGMTSMEISKMLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHGLIS 251 >gi|187927560|ref|YP_001898047.1| LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187724450|gb|ACD25615.1| transcriptional regulator, LuxR family [Ralstonia pickettii 12J] Length = 253 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 54/188 (28%), Positives = 71/188 (37%), Gaps = 17/188 (9%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 P I Y D + + LPI W + + S E GL Sbjct: 69 FSTYPASWIRRYQEAGHVAADPVVKLITTSNLPIHWDADDLQAAR--SPVFDEAREHGLA 126 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLML-----ANEVIIEAHGACYQVITDFLELFKKRS 168 GI P+ H TS+ + + A + L S Sbjct: 127 --TGITIPINGFDHTRALFSVTSDQAPERSQRHTDAISGLAVLTALHLHEAVRRLDASMS 184 Query: 169 SAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +A +LT RE CLQ A G TS EIA L +S TV ++G+AT KL A NR QA+A+ Sbjct: 185 NAPIPSLTSREKECLQWAAAGKTSWEIARILSVSERTVIFHIGNATKKLGATNRRQAVAR 244 Query: 228 AIRFGYIC 235 AI I Sbjct: 245 AISLRLIA 252 >gi|222350143|emb|CAX32456.1| LuxR-type regulator [Rhizobium leguminosarum] Length = 251 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 64/190 (33%), Gaps = 9/190 (4%) Query: 55 HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ---EETVIESSGQLSVRLEGG 111 + I D + + P W+ + + + + G Sbjct: 62 GRWPEHWPRIYAAKKYALIDPMVRYLGHAQRPFRWREAMAAFHKDAHQRRMEQMMVDAFG 121 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--- 168 G FP+ + + + L+ I + L+L + Sbjct: 122 HGLEDGYIFPIHGRNGTLASLSLAGKPIELSPVEIALLEAVARKAFWRLLDLKGEAPALE 181 Query: 169 ---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 A LT RE L +G TS EI++ L +S HTV+ Y+ KL A NR QA+ Sbjct: 182 TVLPADTPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQDKLKAKNRQQAV 241 Query: 226 AKAIRFGYIC 235 A A R G I Sbjct: 242 ALAFRHGLIS 251 >gi|254471678|ref|ZP_05085079.1| transcriptional regulator, LuxR family, putative [Pseudovibrio sp. JE062] gi|211958880|gb|EEA94079.1| transcriptional regulator, LuxR family, putative [Pseudovibrio sp. JE062] Length = 233 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 56/235 (23%), Positives = 96/235 (40%), Gaps = 10/235 (4%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRR--QQLICELHNYDL 59 S+ K S + P L ++++ ++ R A + + + L P R L+ D Sbjct: 5 SDIEAKVKAISEARAAKPVLDIVESYLR-RLGASHILITGLPMPNRTIDSLVHRFRWPDE 63 Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 +G + + GD L SG P++W +T +S + EG + + Sbjct: 64 RNGGVERTTLSA-GDSALMLGLSGNRPVVWSVSGTDT--GNSELFAAIGEGARV----MV 116 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 PV V+ + + C EL +L+ RE Sbjct: 117 IPVDALHPFQAMVVGAGHQIAAEPYDLASLEIVCSAAFRRLFELGVISDQRPGDLSARER 176 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G T+ EIAE L +S TV+A+L +A+ KL+A N+ + +A+R+G I Sbjct: 177 RVLELTALGKTAHEIAELLEISQRTVHAHLQNASAKLNASNKTHTVVEALRYGQI 231 >gi|90420983|ref|ZP_01228887.1| possible transcriptional regulator, lysR family [Aurantimonas manganoxydans SI85-9A1] gi|90334761|gb|EAS48537.1| possible transcriptional regulator, lysR family [Aurantimonas manganoxydans SI85-9A1] Length = 294 Score = 134 bits (338), Expect = 8e-30, Method: Composition-based stats. Identities = 51/186 (27%), Positives = 75/186 (40%), Gaps = 8/186 (4%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI----QEETVIESSGQLSVRLE 109 L N+ G L + + +P +W +E + ++ + E Sbjct: 113 LSNWSESFGQAYEQLGLHRSKLVVGALKTDPMPFVWDIDTLYGADEPDPSPAARMLMEAE 172 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 AG FPV NG + F L E I E H + + + + Sbjct: 173 Y----LAGAFFPVHGLTAFNGALSFAGRSCALPAEAIRELHLFAFALFGMLAAARFEENR 228 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE CL+LA G TS EI L LS +T++ YL +A KLDA NR A+A A Sbjct: 229 RNNPLSVRERDCLKLAMLGKTSSEIGIILSLSEYTISQYLTAAQRKLDASNRTHAVALAA 288 Query: 230 RFGYIC 235 + GY+ Sbjct: 289 QLGYLS 294 >gi|296114148|ref|ZP_06832803.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] gi|295979224|gb|EFG85947.1| LuxR family transcriptional regulator [Gluconacetobacter hansenii ATCC 23769] Length = 237 Score = 134 bits (338), Expect = 9e-30, Method: Composition-based stats. Identities = 45/181 (24%), Positives = 74/181 (40%), Gaps = 21/181 (11%) Query: 71 TYGDDFLFHF---------------NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 TY DD++ H+ LP W S+ + + Q ++ E + F Sbjct: 59 TYPDDWMQHYIDNCYQNIDPVIATARHEFLPYGWGSVG----VRNKSQKNMMQEFQDIGF 114 Query: 116 -AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-N 173 +G A P+ + V S + A Q ++++ +S + Sbjct: 115 RSGYAVPLPVSPSMLLLVGMASNDKEINFRDRTILQIAINQYHACYMQITNGGTSKEDCS 174 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE CL G + EI+ L +S +TV +L + KL A NRIQA+ +AI G Sbjct: 175 LSDRERECLLWVAQGKNTLEISSILNISDNTVKYHLKNIMQKLGAHNRIQAVVQAINLGL 234 Query: 234 I 234 I Sbjct: 235 I 235 >gi|86750432|ref|YP_486928.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gi|86573460|gb|ABD08017.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris HaA2] Length = 240 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 78/210 (37%), Gaps = 8/210 (3%) Query: 30 ARNFALYTINSAL-DFPRR----QQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGL 84 R F + + + PR Q LH + L + + D + ++ Sbjct: 33 VRPFGYSQVLAGIIPTPRTSVKQQIANVVLHRWPLRWSERYFSRGYLFEDPTIRRVSTSS 92 Query: 85 LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANE 144 P +W +Q ++ +R G G P+ ++ + + L Sbjct: 93 EPFVWSELQVGP--DARANEIMREAGEFGLGCGFTVPMITLDGQSAGLSIAGDRAELPPS 150 Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 L+L +K + A LT+RE L +G T EI++ L +S H Sbjct: 151 HRGMVQLVAMYAFLRSLKLGEK-PTPAITLTKREADVLHWIAEGKTDWEISKILRVSEHL 209 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V+ KL AVNRIQA+A A+R G I Sbjct: 210 VDKMARQIRTKLGAVNRIQAVALAMRSGII 239 >gi|172152203|emb|CAP91064.1| BraR protein [Burkholderia kururiensis] Length = 234 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 35/186 (18%), Positives = 59/186 (31%), Gaps = 10/186 (5%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 NY Y D + H P++W T + S Sbjct: 49 NYASSWRQAYTDQGFAYIDPTVSHCTKHSSPLVWSPDLFATTPQKS---MYEEASAHGLR 105 Query: 116 AGIAFPVRLGFHKNGYVIFTSE-------FLMLANEVIIEAHGACYQVITDFLELFKKRS 168 AG+ P+ + G + F ++ + + + + T L Sbjct: 106 AGVTLPIHGPRQEAGMLCFVNDSNPNDKFWQHIDTALPNLVLMRDLVIDTSQRHLSAHAQ 165 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT RE CL+ G ++ EI+ L S VN ++ + K +R A A Sbjct: 166 TLIPKLTPRERECLKWTALGKSTWEISHILNCSEAVVNFHMKNIRAKFGVNSRRAAAVIA 225 Query: 229 IRFGYI 234 + G I Sbjct: 226 TQLGLI 231 >gi|328542023|ref|YP_004302132.1| transcriptional regulator, LuxR family [polymorphum gilvum SL003B-26A1] gi|326411773|gb|ADZ68836.1| Transcriptional regulator, LuxR family [Polymorphum gilvum SL003B-26A1] Length = 239 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 79/226 (34%), Gaps = 4/226 (1%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + Q++S RL + F + + S + + + + + Sbjct: 16 RLETAQDVSARLGALARDY---GFHAHVLASFQGPGTVAEPRILAAGWAQEWQERYLVNQ 72 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + +P W E + G G+ PV Sbjct: 73 YAVDDPVVVRATLASMPFRWSDALNEPWVTPRGVRVFDEARAFRLCDGVFIPVYGPKGLE 132 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDG 188 G + E + + E + H L + + +A LT RE CL+ G Sbjct: 133 GGLSLGGERVDVGAEELKALHLVGLYAYDHVRALSQGDPAWSAGTLTPRELECLKWVAAG 192 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EI++ LG+S HT + YL A KL A NR A+A+A R I Sbjct: 193 KTSWEISQVLGISRHTADWYLAEAVRKLGAANRTHAVAEAFRRAMI 238 >gi|167566108|ref|ZP_02359024.1| probable transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Burkholderia oklahomensis EO147] Length = 236 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 47/229 (20%), Positives = 83/229 (36%), Gaps = 15/229 (6%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S+ E+ L + NF+ + P + I L NY + L Sbjct: 16 STSSEIFSSLEKYTRELGFDNFSYGFCHP---IPFTKPRIVILSNYPERWRGRYSELGYV 72 Query: 72 YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 D + H + P W + + GL+ G A + G Sbjct: 73 NIDPTVLHGRNSQSPFTWSEL---PTSDVRSFWDEANAHGLVV--GWAKSILDSDGGLGM 127 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLEL------FKKRSSAARNLTERETSCLQLA 185 + L + + + ++ D + K+ +++A L+ RE L+ Sbjct: 128 LTLARSNEELCGKELAAKNLRMC-LLADLTHMVLSDAYRKEMTASADKLSAREVEILRWH 186 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T++EI L +S+ TV + +A VKL A N+ A+A+A G + Sbjct: 187 ADGKTADEIGRILSISIDTVKFHTKNAVVKLGASNKTAAVARAAIMGLL 235 >gi|12620586|gb|AAG60862.1|AF322012_167 ID375 [Bradyrhizobium japonicum] Length = 261 Score = 133 bits (336), Expect = 1e-29, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 84/238 (35%), Gaps = 20/238 (8%) Query: 11 SSSLQELSPRLHLIQNRIKARNF---ALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + + ++ L+ N F A ++ + ++L L + P+ Sbjct: 30 AIQTRSIAALFDLLVNFASNEGFDKVAYGALSCS----NERRLPEYLPPPPTIN--FPSD 83 Query: 68 LIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + Y D + P +W + ++ +R G++ Sbjct: 84 WCQRYAEQEYQAIDPVVRRTAMLPRPFLWDELTSRYELQPRELRVLREAKEAGLKHGMSV 143 Query: 121 PVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 P+ ++ +V F S F + A + + + LT Sbjct: 144 PLFGSQGRSAFVSFASPFDDADPQDRMAHLTTLASAFHNAVAQITPPLDESCETDIPLTP 203 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RET CL +G ++ I + + ++ +TVN ++ + KL A NR A+AKA R G I Sbjct: 204 RETECLYWVAEGKSAWVIGQLVNVTDNTVNFHMKNVIRKLGAANRTNAVAKATRRGII 261 >gi|13474964|ref|NP_106527.1| hypothetical protein mll8752 [Mesorhizobium loti MAFF303099] gi|14025713|dbj|BAB52313.1| mll8752 [Mesorhizobium loti MAFF303099] Length = 248 Score = 133 bits (335), Expect = 2e-29, Method: Composition-based stats. Identities = 37/181 (20%), Positives = 66/181 (36%), Gaps = 9/181 (4%) Query: 63 DIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 + PN E Y D + G+ I W + ++ + + + Sbjct: 66 NYPNEWKERYFKMGYDKIDPIIKKSRKGVGAIRWSEVYKDASTTDNERRVLDEAATFGLK 125 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFL-MLANEVIIEAHGACYQVITDFLELFKKRS-SAARN 173 +G+ P+ + F + N + A + + ++ Sbjct: 126 SGVTVPLHGPAGSFTIMSFAQPWDREFQNRTVTYLQLAALHFHVRVTKGTSSNALKQVQD 185 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE C+ G +S EI + LG+S +TVN +L +A KLD +R A KA G Sbjct: 186 LSLREKECILWIARGKSSWEIGKILGISGNTVNFHLKNAMRKLDTASRTVAAIKATSLGI 245 Query: 234 I 234 + Sbjct: 246 V 246 >gi|311105770|ref|YP_003978623.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310760459|gb|ADP15908.1| bacterial regulatory protein, LuxR family protein 7 [Achromobacter xylosoxidans A8] Length = 237 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 87/236 (36%), Gaps = 14/236 (5%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 LT ++S Q + ++ + + F+ P + +Y + + Sbjct: 10 LTTNSATSEQAVFTKVAAVAQEL---GFSYCAYGLRAALPFTNPQFVMISDYPIAWQERY 66 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D + H + +PI+W + E+ GL G + Sbjct: 67 AQARYLEIDPTVKHCSRSSIPIVWS---DRVFAETPELWDEAQAVGLCV--GWSQSNLDA 121 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------RSSAARNLTERET 179 + G + + L++ ++ ++T F K + + LT RET Sbjct: 122 YGTGGMLTLARQKEQLSDAELLSKELRMRWLVTAAHLAFSKVLLPRFKLAPNVPLTRRET 181 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+ A DG TS +++E L ++ TV + +A KL A NR A+A+A G + Sbjct: 182 EILKWAADGKTSSDVSEILAIAESTVRFHTKNAISKLGARNRTAAVARAALLGLLS 237 >gi|27376991|ref|NP_768520.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27350133|dbj|BAC47145.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 253 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 84/238 (35%), Gaps = 20/238 (8%) Query: 11 SSSLQELSPRLHLIQNRIKARNF---ALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + + ++ L+ N F A ++ + ++L L + P+ Sbjct: 22 AIQTRSIAALFDLLVNFASNEGFDKVAYGALSCS----NERRLPEYLPPPPTIN--FPSD 75 Query: 68 LIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 + Y D + P +W + ++ +R G++ Sbjct: 76 WCQRYAEQEYQAIDPVVRRTAMLPRPFLWDELTSRYELQPRELRVLREAKEAGLKHGMSV 135 Query: 121 PVRLGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 P+ ++ +V F S F + A + + + LT Sbjct: 136 PLFGSQGRSAFVSFASPFDDADPQDRMAHLTTLASAFHNAVAQITPPLDESCETDIPLTP 195 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RET CL +G ++ I + + ++ +TVN ++ + KL A NR A+AKA R G I Sbjct: 196 RETECLYWVAEGKSAWVIGQLVNVTDNTVNFHMKNVIRKLGAANRTNAVAKATRRGII 253 >gi|119116629|dbj|BAF40892.1| LuxR [Shewanella hanedai] Length = 243 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 12/187 (6%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 L NY N D + + S PIIW +++ ++ + + L Sbjct: 54 LDNYPSCWKKYYNDEKLIDYDPIIDYSASNYAPIIWSMLEQSKWDKNKTNVIEEAKNSNL 113 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--------QVITDFLELFK 165 +G +FPV + G + F + + +I H Y +++ + K Sbjct: 114 K-SGFSFPVHTKNNSFGVISFANSNNE---KTLISLHSNSYSYVLLVLPELLDSHQRINK 169 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT RE CL +G T+ EI++ L S TV+ ++ + KL NR Q+I Sbjct: 170 NIGNTCTQLTPREKECLAWISEGKTTWEISKILDCSERTVSFHITNLQTKLGTNNRSQSI 229 Query: 226 AKAIRFG 232 +K+I G Sbjct: 230 SKSILTG 236 >gi|153007543|ref|YP_001368758.1| autoinducer-binding domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151559431|gb|ABS12929.1| Autoinducer-binding domain protein [Ochrobactrum anthropi ATCC 49188] Length = 235 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 11/186 (5%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQS--IQEETVIESSGQ-LSVRL 108 L G +P + Y D + + + P++W S E I + Q +++ Sbjct: 51 LSFGSLPQEWTDHYTARKYADVDPLVRKALNSIEPLVWSSKLFAEAPQIWADAQRFGIKV 110 Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 +A L F + G + + E ML ++ I A+ + L++ Sbjct: 111 GISQPCWAAQGVFGMLSFLRTGPALSSGEISMLRRQMQIAANLLHLSMYEH-LDVPTMNC 169 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + NLT RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA Sbjct: 170 VSEVNLTMREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKA 229 Query: 229 IRFGYI 234 FG + Sbjct: 230 RTFGLL 235 >gi|37223230|gb|AAQ90214.1| LuxR [Vibrio mimicus] gi|37223256|gb|AAQ90231.1| LuxR [Aliivibrio fischeri] Length = 224 Score = 132 bits (333), Expect = 3e-29, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 81/210 (38%), Gaps = 9/210 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K S +++ L + + Y + + I L NY + Sbjct: 19 KACRSNNDINQCLSDMTKMVHCE---YYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDA 75 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + NS PI W + V + S + ++ G +FP+ + Sbjct: 76 NLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNV-IKEAKTSGLITGFSFPIHTANNG 134 Query: 129 NGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183 G + F SE + + + A ++ ++ ++K + + +LT+RE CL Sbjct: 135 FGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLA 194 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 A +G +S +I++ LG S TV +L +A Sbjct: 195 WACEGKSSWDISKILGCSERTVTFHLTNAQ 224 >gi|209551411|ref|YP_002283328.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537167|gb|ACI57102.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 251 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 73/227 (32%), Gaps = 18/227 (7%) Query: 25 QNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-------DDFL 77 + I F Y + L Q+ + P + Y D + Sbjct: 27 ERVIDDCGFEYYGLLRHLPQNPAQR--HPEPRAAALADRWPEQWPQIYSAKKYVMIDPMV 84 Query: 78 FHFNSGLLPIIWQSIQEETVIESSG---QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + P W+ ++ + + G G FPV G + Sbjct: 85 RYLAHAQRPFRWRESLAAFGKDAQRRRMEQMMVDAFGHGLEDGYIFPVHGRNGILGSLSL 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS------SAARNLTERETSCLQLAGDG 188 + + L+ I + LEL + A LT RE L +G Sbjct: 145 AGKPVELSPVEIALFEAVARKSFWRMLELKDEAQALETVLPADTPLTRREMEILHYLAEG 204 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 TS EI + L +S HTV+ Y+ KL A NR QA+A A R I Sbjct: 205 MTSMEIGKVLKISNHTVDWYMNGLQNKLKAKNRQQAVALAFRHRLIS 251 >gi|288733198|emb|CBI71275.1| UnaR protein [Burkholderia unamae] Length = 234 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 64/187 (34%), Gaps = 12/187 (6%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG-GLLP 114 NY N Y D + H + P+IW + + Q S+ E Sbjct: 49 NYSAAWRQTYNDHGMAYFDPTVTHCTTRSSPLIWS----PELFATEQQQSMYEEARAYGL 104 Query: 115 FAGIAFPVRLGFHKNGYVIFTSE-------FLMLANEVIIEAHGACYQVITDFLELFKKR 167 AGI P+ + G + F ++ + + + + T L Sbjct: 105 RAGITLPIHGPRQEVGMLCFVNDASPSDGFWDDVNRALPNLVLLRDLVLDTSHRHLTDHV 164 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S LT RE CL+ G ++ EI+ L S VN ++ + K +R A Sbjct: 165 QSLIPKLTPREKECLKWTALGKSTWEISHILNCSEAVVNFHMKNIRGKFGVNSRRAAAVI 224 Query: 228 AIRFGYI 234 A + G I Sbjct: 225 ATQMGLI 231 >gi|270341116|emb|CAQ15948.2| vR protein [Pseudomonas fuscovaginae] Length = 239 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 83/235 (35%), Gaps = 23/235 (9%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG------DIPNILIETYG- 73 + + I AR + + SA + L N + + + P+ Y Sbjct: 7 CVELLSAIDARTWFESLVFSARKLGYSKVLYALKPNKEAQNNAAEIMSNFPDDWRRRYDN 66 Query: 74 ------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D +FH S LPI W+ +T E R G G+ P+ Sbjct: 67 ENYSIIDPTVFHSFSSSLPIPWEDKLYKTQKEKEFAEEARWAG---LSHGMTLPIHGPQG 123 Query: 128 KNGYVIFTSEFL-------MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 + G + + + + L N + Y V + F + A +LT RE Sbjct: 124 QVGMLSLSCDPMSEPEYQKTLKNSLGAATLLRDYAVTSSFNHFQQGSGYTAPHLTPRELE 183 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L A T+ EI + L LS TV + + KL +R A+A+AI+ I Sbjct: 184 ILHWAWAEKTTWEIGKILSLSEPTVEFHFKNIRRKLKVTSRRLAVARAIQLDLIS 238 >gi|222086655|ref|YP_002545189.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221724103|gb|ACM27259.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 243 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 67/164 (40%), Gaps = 5/164 (3%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA---GIAFPVRLGFHKNGY 131 L ++P W +++ + +L L LL GI P+ + Sbjct: 82 PMLQRVRDSVMPRAWHLLEKNISQDM--ELPRELHALLLSHNCPMGIVIPINSSDGQRLV 139 Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 F L + E + Q + + + S L+ RE ++ G TS Sbjct: 140 FWFMGNRSSLGQSELNELNMIMLQAHDIYNCIKRNDGSVLHMLSARELEVVRWTAQGKTS 199 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 EI + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 200 VEIGQILSLSDHTVNAYMMNAIKKLDCVNRTQLVAKAIRLKLIS 243 >gi|92109564|ref|YP_571851.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91802646|gb|ABE65019.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 231 Score = 132 bits (332), Expect = 4e-29, Method: Composition-based stats. Identities = 43/181 (23%), Positives = 67/181 (37%), Gaps = 7/181 (3%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 P ++ Y D + H P W + S+ +L Sbjct: 50 FQRFPAQWLDRYSRKGYVFRDPIIQHLFHERTPFTWHEGYKSCPQRSNVRLIQGEAAEFG 109 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 G P+ + + F + A+ + + A + L N Sbjct: 110 LRDGYVVPISTIDGEIVSLSFGGPGTLPASADLSVLNFAASYALGRHLHRIATWRRVNSN 169 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE CL AG+G T+ EI+ LG+S TV ++ +A KL AV++ AIA AIR Sbjct: 170 LTAREWDCLLWAGEGKTNWEISAILGISKSTVTKHIMAARAKLGAVSKAHAIAMAIRTKL 229 Query: 234 I 234 + Sbjct: 230 L 230 >gi|218460014|ref|ZP_03500105.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli Kim 5] Length = 198 Score = 132 bits (331), Expect = 5e-29, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 68/191 (35%), Gaps = 16/191 (8%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRLEG 110 +G P ++ Y D + + P W+ + + + Sbjct: 8 AGRWPERWLQIYAAKKYIRIDPMVRYLAHAQRPFRWRESMAAFNGSTHRRRMEQMMVDAF 67 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-- 168 G G FP+ G + + + L+ I + LEL + Sbjct: 68 GHGLEDGYLFPIHGRNGILGSLSLGGKPIELSPVEIALLEAVARKTFWRLLELTGEAEAL 127 Query: 169 ----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A LT RE L +G TS EI++ L +S HTV+ Y+ KL A NR QA Sbjct: 128 ETVLPAETPLTRREMEILHYLAEGMTSMEISKMLKISNHTVDWYMNGLQNKLKAKNRQQA 187 Query: 225 IAKAIRFGYIC 235 +A A R G I Sbjct: 188 VALAFRHGLIS 198 >gi|83956361|ref|ZP_00964786.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter sp. NAS-14.1] gi|83839409|gb|EAP78592.1| autoinducer-binding transcriptional regulator LuxR [Sulfitobacter sp. NAS-14.1] Length = 269 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 92/247 (37%), Gaps = 25/247 (10%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +SE+ + KS+ +L L+ + +N ++ + LI Sbjct: 33 LSEDFSSRAKSTPELDLETTLNDLSTLYGLKNITYFSASIPYANDDEHILI--------- 83 Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 +E Y D L + LLP+ W + T E+S + + Sbjct: 84 -TTYSTTWVEHYFSLKYQDVDPVLHAGSRSLLPVDWGHL--STTGETSRNFFGEAKEYGI 140 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSE-----FLMLANEVIIEAHGACYQVITDFLE-LFKKR 167 G+ PVR + + S+ + + E+I + + + + Sbjct: 141 GETGLTIPVRGMLGEEAMISLNSDLRARDWELFCREMISDFTYFAHLLHDSVTRSRIHQH 200 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT+RE L+ A G T+ E LGL+ TV+ YLG+A KL + QA+A Sbjct: 201 ETDHPQLTKREAQVLRWAARGKTAWETGIILGLTEKTVSFYLGNACAKLKVATKTQAVAF 260 Query: 228 AIRFGYI 234 A++ I Sbjct: 261 AVKERLI 267 >gi|307727058|ref|YP_003910271.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1003] gi|307587583|gb|ADN60980.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1003] Length = 242 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 62/189 (32%), Gaps = 19/189 (10%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG-GL 112 TY D + H + P++W + ++ Q S+ E Sbjct: 55 RSTYAPAWRRTYDEQGLVHIDPTVAHCATRSTPLVWS----PEIFTTAPQQSMYEEARAH 110 Query: 113 LPFAGIAFPVRLGFHKNGYVIF---TSEFLMLANEVIIEAHGACYQ----VITDFLELFK 165 AG+ P+ + G + F S + + + T L Sbjct: 111 GLRAGVTLPIHGPNQEAGMMCFVNDASPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHLHT 170 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S LT RE CLQ G ++ EI+ L S VN ++ + KL +R A Sbjct: 171 HAQSLLPKLTPRERECLQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRAAA 230 Query: 226 AKAIRFGYI 234 A + G I Sbjct: 231 VIATQLGLI 239 >gi|323528655|ref|YP_004230807.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1001] gi|323385657|gb|ADX57747.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1001] Length = 242 Score = 131 bits (330), Expect = 7e-29, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 62/191 (32%), Gaps = 19/191 (9%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG- 110 TY D + H + P++W + ++ Q S+ E Sbjct: 53 YVRSTYAPEWRRTYDEQGLVHIDPTVAHCATRSTPLVWS----PEIFTTAPQQSMYEEAR 108 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIF---TSEFLMLANEVIIEAHGACYQ----VITDFLEL 163 AG+ P+ + G + F S + + + T L Sbjct: 109 AHGLRAGVTLPIHGPNQEAGMMCFVNDASPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHL 168 Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT RE CLQ G ++ EI+ L S VN ++ + KL +R Sbjct: 169 NTHAQTLLPKLTPRERECLQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRA 228 Query: 224 AIAKAIRFGYI 234 A A + G I Sbjct: 229 AAVIATQLGLI 239 >gi|325294100|ref|YP_004279964.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325061953|gb|ADY65644.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 258 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 70/219 (31%), Gaps = 10/219 (4%) Query: 27 RIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLP 86 I+ F + ++ + + ++ D P Sbjct: 40 LIREYGFEYFLVSRRMTGELASTGQILAQHLPEGWIEVYRAKKYNLVDPVRKVIGMVHKP 99 Query: 87 IIWQSIQE---ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 W+ E + + G G AFPV G V E L + Sbjct: 100 FQWKEALEGLPRAMHRKRANVFFHDAGRYGLQGGYAFPVHGRAGFIGAVFLGGEDRQLPS 159 Query: 144 EVIIEAHGACYQVITDFLELFKK-------RSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + A V L+L + + +A LT RE L L DG TS EI Sbjct: 160 LHVELLDAATRAVFWRLLDLSGQVHNLNNAPNVSALELTRREMEVLTLMADGMTSTEIGR 219 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +L +S HTV+ Y+ + A NR +A A R G + Sbjct: 220 QLSISNHTVDWYINGIQRRFSAKNRQHTVALAFRNGLLS 258 >gi|237807075|ref|YP_002891515.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] gi|237499336|gb|ACQ91929.1| transcriptional regulator, LuxR family [Tolumonas auensis DSM 9187] Length = 254 Score = 130 bits (328), Expect = 1e-28, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 79/210 (37%), Gaps = 7/210 (3%) Query: 27 RIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLP 86 A NF Y + L +Q + L + + D + P Sbjct: 31 LCAANNFEYYQLCLTLRRGLQQTDLTLLTQTPDNWAEHYAKNNTIQNDSLYQRAQTQSRP 90 Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-EV 145 + WQS + + E+ + + G+ GIA P+ GY + + Sbjct: 91 LFWQS-EAKPEHENFLPMDCWRQFGME--EGIAVPLHGPAGFCGYFALSRHKKEPIRLQD 147 Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + + ++LF S NL+ RE CL +G TS EIA+ LG++ TV Sbjct: 148 FFHLSYLGHILQEQAIQLFSPEQS---NLSGREKECLFWVSEGKTSWEIAQILGITERTV 204 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 N +L +A K NR Q +AK I G + Sbjct: 205 NFHLNNAIRKSGCKNRYQTVAKNIITGELA 234 >gi|90422223|ref|YP_530593.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90104237|gb|ABD86274.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 245 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 71/221 (32%), Gaps = 13/221 (5%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY-------G 73 + +++ A + + I +A +L C + + P Y Sbjct: 29 IDAVRDAAAAYGYRSFVIAAAP------KLACNAFDKRVLLRHWPEAWFGQYLQDNYQDH 82 Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D H W + + + + G P+ + Sbjct: 83 DPIAAHARQQTRAFCWSDAPWDRSDKKTAAVMDCAAHDYDMRRGFCVPIFGMRGYEAAIS 142 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F + + + + + + + L+ RE + A G T+ + Sbjct: 143 FGGPEIDASPAATAAMELIAIYAMNQLMTMREPPARRQTTLSPREREVVAWAAVGKTAWD 202 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A L +S TVN ++ SA KLDA + QA+ ++IR G I Sbjct: 203 TARILAISTDTVNKHMASAMRKLDACTKTQAVVESIRRGEI 243 >gi|167589289|ref|ZP_02381677.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 229 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 75/219 (34%), Gaps = 11/219 (5%) Query: 23 LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82 I++ ++ + + +P + I L+NY D + H Sbjct: 16 WIEHAARSLGYEYCAYGLRMPWPVSRPRIYMLNNYPEAWQKRYQEARYVDIDPTVKHARR 75 Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT------S 136 P++W ++ G +G + + Sbjct: 76 SQAPLVWSD-----ACFAATPQLWCEAQAHGLRHGWTQSAFDSCGVSGMLTLARSNGPIT 130 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + NE + + + L K R LT+RE L+ A DG TS EI+ Sbjct: 131 PAELEQNEFKMRWLVSTAHLAMTGKLLPKLAPDTERGLTDREVEVLKWAADGKTSGEIST 190 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L +SV TVN ++ +A KL A N+ A+ +A G + Sbjct: 191 ILVISVDTVNFHVKNAVSKLKAANKTSAVVRATMLGLLS 229 >gi|295700193|ref|YP_003608086.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295439406|gb|ADG18575.1| transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 234 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 66/192 (34%), Gaps = 21/192 (10%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 +TY D + H S P+IW + + Q S+ E Sbjct: 45 YLRSTYAPAWRQTYDEQGMVHIDPTVAHCLSRSAPLIWT----PEIFATPAQQSLYEEAR 100 Query: 112 -LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI--TDFL------E 162 AG+ P+ + G + F ++ A+ + A ++ D + Sbjct: 101 SYGLGAGVTLPIHGPNQEAGMMCFVND-DKPADGFRRHVNAALPNLVLLRDLVIDTSKQH 159 Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L S LT RE CL+ G ++ EI+ L S VN ++ + K +R Sbjct: 160 LDSHAQSLMPKLTPRERECLKWTARGKSTWEISHILSCSEAVVNFHMKNIRAKFGVNSRR 219 Query: 223 QAIAKAIRFGYI 234 A A + G I Sbjct: 220 AAAVIAAQLGLI 231 >gi|13488404|ref|NP_109411.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14028158|dbj|BAB54750.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 242 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 78/224 (34%), Gaps = 8/224 (3%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHN--YDLDSGDIPNIL 68 + S + R NF + + +++++ + + + L Sbjct: 19 ARSADAILQEFRFTMERYGLHNFLITGLPVPHGTDWQREILADGWSPEWHHRYVTEAYFL 78 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + P W + ++ +L + GI P+ + Sbjct: 79 ----HDPCVAQCRHSPEPFRWGELPVARLVP-RAKLVMDEAAEFGMKEGICIPIHVPLAG 133 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGD 187 G V S+ + + + C L + LT RE L+ + Sbjct: 134 PGVVTMASDRMEVPPSAMPLIETLCVHTFRSLSALGTPGDGNEPTPLTARERELLEWSAQ 193 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G ++++IA LG++ +TV ++ + KLDA+N AI KA+R Sbjct: 194 GKSTDDIACILGVTRNTVESHQRNIRGKLDAINVAHAIVKALRR 237 >gi|218514308|ref|ZP_03511148.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 254 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 74/210 (35%), Gaps = 3/210 (1%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 ++ + + + R F + + + + + ++ + + + Sbjct: 27 DIFRFMKRVTEAYRCRAFMVLNLPPITSLDLQGNTV--ITSWPAELLALYDQEGLMVNSP 84 Query: 76 FLFHFNSGLLPIIWQSIQEE-TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L + P + ++ + + L V L FP G V F Sbjct: 85 VLRRLRTSARPFSYDMSRQNWSRDDGKSDLVVGLFERFRMTRCAYFPTHEPSGLRGAVSF 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 + + + E V E+ + LT+RE CL G TS EI Sbjct: 145 AGDREPFSPTEMRELCYIAIHVFDRLAEIRNLDTRVTDALTDREIDCLNWTAAGKTSAEI 204 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 AE L LS HTVN YL AT KLD VNR QA Sbjct: 205 AEILVLSEHTVNHYLNRATKKLDTVNRTQA 234 >gi|186473257|ref|YP_001860599.1| LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184195589|gb|ACC73553.1| transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 234 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 62/185 (33%), Gaps = 10/185 (5%) Query: 57 YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 Y N + D + H + P+IW +T Q A Sbjct: 50 YSPTWRQFYNEQGFAHIDPTVAHCMTKSSPLIWSPDLFDTY---PAQTMYEEARAHGLRA 106 Query: 117 GIAFPVRLGFHKNGYVIFTSE-------FLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 G++ P+ ++G + F ++ + L + + T L + Sbjct: 107 GVSLPIHGPRQESGLICFVNDHNPSDDFWRHLDVVLPNLVLLRDLVIDTSQPHLNTHTQA 166 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE CL+ G ++ EI+ L S VN +L + K +R A A Sbjct: 167 LVPKLTPREQECLKWTARGKSTWEISHILNCSEAVVNFHLKNIRTKFGVNSRRAAAVIAT 226 Query: 230 RFGYI 234 + G I Sbjct: 227 QLGLI 231 >gi|170752129|ref|YP_001758389.1| LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170658651|gb|ACB27706.1| transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 242 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 11/183 (6%) Query: 61 SGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + +P Y D + + P W ++ +T + + G Sbjct: 63 ASTMPEGWARRYVTQGYALHDPTVRRLCTTATPFDWNAVLPDT---PTAGRVMNEAGEFG 119 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR- 172 AGI P + G + + E + + + + + L + + ++ A Sbjct: 120 IRAGITVPFVTLDGEPGGISVSGERIEIDPAERVAVNLVATYAVGQLLLMNSRPAAPAPA 179 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQ A +G T EI +G++ V+ +L SA KLD VNR +A+A+R G Sbjct: 180 RLSPREREALQWAAEGKTDVEIGMVMGITAAGVDYHLRSARAKLDTVNRAHTVAQALRSG 239 Query: 233 YIC 235 I Sbjct: 240 LIT 242 >gi|91974882|ref|YP_567541.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] gi|91681338|gb|ABE37640.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB5] Length = 242 Score = 129 bits (325), Expect = 3e-28, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 75/231 (32%), Gaps = 16/231 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 ++ + + + I + F+ Y + + L P L N P E Sbjct: 19 AADRLDGPSLIRQFETHIASGGFSAYIM-AGLPSPGAGLADLTLAN------GWPRGWFE 71 Query: 71 TYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 Y D H + + P W + + + G P+ Sbjct: 72 LYVRENYIAVDPVPRHGATTVQPFEWSEAPYDRKQNRAAHKVMTHATEFGLVRGYCIPLH 131 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + L L + + R LT RE L Sbjct: 132 YDEGG-AVISMAGDQPDLDPVAKGAMQLIGVYAHNRIRSLHRPKP-QRRLLTSRECEILL 189 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T+ EI+ L ++ TV +L A+ KL+AVNR A+AKA+ FG I Sbjct: 190 WAAHGKTAWEISIILHIAERTVKFHLIEASKKLNAVNRTAAVAKALAFGLI 240 >gi|260425367|ref|ZP_05779347.1| autoinducer-binding transcriptional regulator LuxR [Citreicella sp. SE45] gi|260423307|gb|EEX16557.1| autoinducer-binding transcriptional regulator LuxR [Citreicella sp. SE45] Length = 242 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 87/240 (36%), Gaps = 29/240 (12%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + ++L +++R K + + +++ + G + Sbjct: 18 ELAERREDLQSVAEALRDRFKVDHLVYHWVSA--------------NGEQYGCGTYDPVW 63 Query: 69 IETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 +E Y D + P+ W+ + + + Q G + G + P Sbjct: 64 VERYLEKGYLRIDPVIQGCFQRFHPVDWKRLDWSSKAARAFQWDAIAHG--VGNQGYSIP 121 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-----LELFK-KRSSAARNLT 175 +R + A + +I + LEL +R A+ L+ Sbjct: 122 IRGPNGQFALFTVNHSCDDEAWAEFTALNRRDMILIAHYFNQKALELEPGRRPEPAQPLS 181 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE + L GY+ ++AE L +S HT+ Y+ SA KL A+N A+A+A+ G I Sbjct: 182 PREIEAMTLIAVGYSRAQVAETLSISEHTLRVYIESARFKLGAMNTTHAVARALSRGLIV 241 >gi|330809090|ref|YP_004353552.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377198|gb|AEA68548.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 272 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 22/226 (9%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY-------GD 74 L+ ++ F Y I+ PR + P +E Y D Sbjct: 37 RLLNKVLRQLGFGSYLISLGPVAPR------DTDPLAGLITTFPKRWLEHYRCDGLIEID 90 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L H L+P+ W S + S R + GL +G++ P+R G + Sbjct: 91 PILRHCRRELVPLFWDSERRRARGRSRHFWEQREQHGL--RSGVSIPLRYEM-LRGTLSV 147 Query: 135 T------SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +E +N + + ++ ++ + ++LT +E CL A +G Sbjct: 148 AFDDTQITEQKGFSNPAVYQLFMLIPYLLAGIRHQLQRPAQPRQDLTPKEMDCLYWASEG 207 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ EI+ L S T++ +L +A KL +V+R QA++ A+ G + Sbjct: 208 KTTWEISHILTCSERTIDFHLLNARRKLGSVSRQQAVSAAVACGLV 253 >gi|307300496|ref|ZP_07580276.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318361|ref|ZP_07597796.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306896043|gb|EFN26794.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306904662|gb|EFN35246.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 321 Score = 129 bits (324), Expect = 4e-28, Method: Composition-based stats. Identities = 58/219 (26%), Positives = 91/219 (41%), Gaps = 9/219 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLI--CELHNYDLDSGDIPNILIETYGDDFLF 78 LHL++ I FA + + + L Q+ L N+ + + + + Sbjct: 107 LHLMRRLISRYGFA-HFMIARLPLADEQRFSERLVLSNWPAELVQQYDAGETFQTSELVE 165 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG---IAFPVRLGFHKNGYVIFT 135 LP+ + E + + L P AG A + + + + + Sbjct: 166 RLRQTKLPV---TGGPELMEPAGKGAGKAAFIRLPPHAGMGHFAVLLHTTYGEPFVAVLS 222 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 A + A Q+ F S A L+ RE CL+ A G +S+EIA Sbjct: 223 GTRDEPAGAERATLYLALLQLFECLERTFDAGSGAREKLSSREVECLRWAAAGKSSDEIA 282 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S +TV++Y SAT KLDAVNR+QAIA+A+R I Sbjct: 283 IILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 321 >gi|163744442|ref|ZP_02151802.1| transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] gi|161381260|gb|EDQ05669.1| transcriptional regulator, LuxR family protein [Oceanibulbus indolifex HEL-45] Length = 239 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 71/190 (37%), Gaps = 25/190 (13%) Query: 63 DIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQE-----ETVIESSGQLSVRLEG 110 + Y D + G LP+ W + + + + VR Sbjct: 57 TYDPAWLARYQEENYHLIDPVVDSALEGTLPVDWSELPKVDRVTRDFFGEAMEFGVRQ-- 114 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSE-----FLMLANEVIIEAHGACYQVITDFLELFK 165 G++ P+R H + S+ + +I +A + +D + Sbjct: 115 -----NGVSIPIRDHVHGKAVLTLNSDLRIHEWRKYKRGIIADAIYLGCLLQSDLVAGIA 169 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R L+ RE L+ A G T+ E A+ + +S TVN +L +A KLD N+ A+ Sbjct: 170 GGEPGPR-LSRREKEVLKWAAVGKTAWETAQIMTVSNSTVNHHLYNACAKLDVANKTHAV 228 Query: 226 AKAIRFGYIC 235 AKAIR I Sbjct: 229 AKAIRAQLIT 238 >gi|86358681|ref|YP_470573.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86282783|gb|ABC91846.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 241 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 65/162 (40%), Gaps = 3/162 (1%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLS-VRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 F +P+ W +L + L + AG+A P + Sbjct: 82 PFGVRLRESAVPLAWHLDDTVNGQAFPAELRALMLRHAIP--AGVAMPTIAVDGRRLVFW 139 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F E L + E + + + + +A L+ RE ++ G TS E Sbjct: 140 FCGERAALGQSEVNELAIVILHTLDAYNAVRRNEENAHSALSARELEVVRWTAQGKTSIE 199 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 I + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 200 IGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLIS 241 >gi|159185350|ref|NP_355660.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159140603|gb|AAK88445.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 245 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 78/228 (34%), Gaps = 26/228 (11%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYD-LDSGDIPNILIETY-------GDDFL 77 I+ F + ++ +++ EL + + + +P+ +E Y D Sbjct: 26 KLIREYGFEYFLVS--------RRMTGELASAGQILAEHLPDGWLEVYRAKKYNLVDPVR 77 Query: 78 FHFNSGLLPIIWQSIQE---ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 P W+ E + + G G AFPV G V Sbjct: 78 KVIGMVHKPFQWKEALEGLPRAMHRKRASVFFHDAGRYGLQGGYAFPVHGRAGFIGAVFI 137 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKK-------RSSAARNLTERETSCLQLAGD 187 L + + A V L+L + +A LT RE L L D Sbjct: 138 GGPDRQLPSLHVELLDAATRAVFWRLLDLSGQAHGFSNAPDVSALELTRREMEVLALMAD 197 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G TS EI +L +S HTV+ Y+ + A NR +A A R G + Sbjct: 198 GMTSTEIGRQLSISNHTVDWYINGIQRRFSAKNRQHTVALAFRHGLLS 245 >gi|91779483|ref|YP_554691.1| LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91692143|gb|ABE35341.1| transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 234 Score = 128 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 64/191 (33%), Gaps = 19/191 (9%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG- 110 I TY D + H + P+IW + ++ Q S+ E Sbjct: 45 YVRSTYSPIWRRTYDEQGLVHIDPTVSHCATRATPLIWS----PDIFTTAPQQSMYEEAR 100 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSE-------FLMLANEVIIEAHGACYQVITDFLEL 163 AG+ P+ + G + F ++ + + + + T L Sbjct: 101 AHGLRAGVTLPIHGPNQEAGMMCFVNDSNPNDEFWQHINVALPNLVLLRDLVIDTSQRHL 160 Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT RE CL+ G ++ EI+ L S VN ++ + K +R Sbjct: 161 NTHAQTLLPKLTPRERECLKWTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRA 220 Query: 224 AIAKAIRFGYI 234 A A + G I Sbjct: 221 AAVIATQLGLI 231 >gi|197344637|gb|ACH69668.1| LuxR family transcriptional regulator [uncultured proteobacterium] Length = 246 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 81/232 (34%), Gaps = 13/232 (5%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +++ +L R +Q A F L P + Y +I Sbjct: 22 EATDEADLLKR---MQAAAVASGFEHVLFGIELRRPFLDPIQHITSGYPDSYQEIYRTKG 78 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + + + P+IW + + + G + PVR G H Sbjct: 79 FISRDPSVAYCQTHTKPLIWGED----MYLADSYEIMEESTKYGLSHGFSVPVRDGPHVV 134 Query: 130 GYVIFTSEFLMLANE---VIIEAHGA---CYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + + ++++A C V + + + ++ L+ RE CL+ Sbjct: 135 SMLSLARDKPFESAAEKKLVVDAGMVLANCVHVASKNIIVPDVETTLRPKLSRREHECLK 194 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G ++ I++ L +S TV ++ + KL+ R+QA + G I Sbjct: 195 WIAEGKSNGVISDLLKISEPTVEFHIRNLFTKLNVATRVQAAVVGVLMGLIV 246 >gi|170693116|ref|ZP_02884277.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170142114|gb|EDT10281.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 255 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 63/191 (32%), Gaps = 19/191 (9%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG- 110 TY D + H + P++W + ++ Q S+ E Sbjct: 66 YVRSTYAPAWRRTYDEQGLVHIDPTVAHCATRSTPLVWS----PEIFITAPQRSMYEEAR 121 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEF---LMLANEVIIEAHGACYQ----VITDFLEL 163 AG+ P+ + G + F ++ + + + T L Sbjct: 122 AHGLRAGVTLPIHGPNQEAGMMCFVNDANPTDTFWRHIDVVLPNLVLLRDLVIDTSQRHL 181 Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + LT RE CLQ G ++ EI+ L S VN ++ + KL +R Sbjct: 182 HTHTQTLLPKLTPRERECLQWTARGKSTWEISHILNCSEAVVNFHMKNIRTKLGVNSRRA 241 Query: 224 AIAKAIRFGYI 234 A A + G I Sbjct: 242 AAVIATQLGLI 252 >gi|190892823|ref|YP_001979365.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190698102|gb|ACE92187.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|327189482|gb|EGE56638.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 241 Score = 128 bits (323), Expect = 5e-28, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 65/160 (40%), Gaps = 1/160 (0%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 F +P+ W +L + +P AG+A P + F Sbjct: 82 PFGLRLRESAVPLAWHLNDVVNGQAFPAELRALMLHHAIP-AGVAMPTIAVDGRRLVFWF 140 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E L + E + + + + SA L+ RE ++ G TS EI Sbjct: 141 CGERAALGQSEVNELAIIILHALDAYNTVRRNEESAHNALSARELEVVRWTAQGKTSIEI 200 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 201 GQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240 >gi|187918993|ref|YP_001888024.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187717431|gb|ACD18654.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 234 Score = 128 bits (322), Expect = 6e-28, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 65/189 (34%), Gaps = 19/189 (10%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG-GL 112 TY D + H + P+IW + +++ QLS+ E Sbjct: 47 RSTYSPTWRRTYDEQGLVHIDPTVAHCATRATPLIWS----PDIFKTAPQLSMYEEARAH 102 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSE-------FLMLANEVIIEAHGACYQVITDFLELFK 165 +GI P+ + G + F ++ + + + + T L Sbjct: 103 GLRSGITLPIHGPNQEAGMMCFVNDNNPNDEFWRHINVALPNLVLLRDLVIDTSQRHLNT 162 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT RE CL+ G ++ EI+ L S VN ++ + K +R A Sbjct: 163 HAQTLLPKLTPRERECLKWTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAA 222 Query: 226 AKAIRFGYI 234 A + G I Sbjct: 223 VIAAQLGLI 231 >gi|92109527|ref|YP_571814.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91802609|gb|ABE64982.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 228 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 41/181 (22%), Positives = 65/181 (35%), Gaps = 7/181 (3%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 P ++ Y D + H P W E + +L Sbjct: 47 FQRFPAQWLDRYSRKGYVFRDPIIQHLFHERAPFTWHEGYESCPQRRNVRLIRGEAAEFG 106 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 G P+ + + F + + + + A + L + N Sbjct: 107 LRDGYVVPISTIDGEIASLSFGGPGTLPVSADLSVLNFAASYALGRHLHRIATWQRVSSN 166 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE CL AG+G T+ E + LG+S TV ++ +A KL AV++ AIA AIR Sbjct: 167 LTAREWDCLLWAGEGKTNWETSAILGISRSTVTKHIMAARAKLGAVSKAHAIATAIRTKL 226 Query: 234 I 234 + Sbjct: 227 L 227 >gi|254477011|ref|ZP_05090397.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria sp. R11] gi|214031254|gb|EEB72089.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria sp. R11] Length = 239 Score = 128 bits (321), Expect = 7e-28, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 70/190 (36%), Gaps = 15/190 (7%) Query: 58 DLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 G + + Y D + P+ W+ + + + + + Sbjct: 50 HYYFGTYKDEWVARYQEKSYVRVDPVIIGCYQRFHPVDWRRLDWSS--KPAREFMQDARD 107 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------ 164 + G + P+R + ++ + IE H ++ +L Sbjct: 108 HDVGNQGYSIPIRGPKGQFALFTVSNNCDDATWDNFIERHSRDLILMGHYLNRKVLEFEP 167 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + L+ RE L L GY+ ++A+ L +S HT+ Y+ SA KL A+N A Sbjct: 168 DRGPGQVQPLSPREIDALTLLAMGYSRAQVAQTLSISEHTLRVYIESARFKLGAINTTHA 227 Query: 225 IAKAIRFGYI 234 IA+A+ G I Sbjct: 228 IARALSLGLI 237 >gi|184156458|ref|YP_001844797.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii ACICU] gi|183208052|gb|ACC55450.1| DNA-binding HTH domain-containing protein [Acinetobacter baumannii ACICU] Length = 238 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 75/223 (33%), Gaps = 12/223 (5%) Query: 20 RLHLIQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 +L I I +R F + L+NY D + Sbjct: 20 QLFDIVKSIASRLGFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYVEQQYVKIDPTVQ 79 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKNGYVIFTSE 137 H L P++W S +T + E G A R G + Sbjct: 80 HCMVSLQPLVWSSQSAKT----QAEKDFWEEARSYGLNVGWAQSSRDFIGTRGMLTLARS 135 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTS 191 L+ + + Y + K + LT RE L+ +G TS Sbjct: 136 NDQLSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREKEALRWTAEGKTS 195 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+ LG++ TVN +L ++ KL+ N+I A +A+ G + Sbjct: 196 AEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|317050861|ref|YP_004111977.1| regulatory protein LuxR [Desulfurispirillum indicum S5] gi|316945945|gb|ADU65421.1| regulatory protein LuxR [Desulfurispirillum indicum S5] Length = 243 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 42/180 (23%), Positives = 66/180 (36%), Gaps = 16/180 (8%) Query: 65 PNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG 117 P +ETY D P+ W +T S ++ G Sbjct: 69 PEPWLETYVVRKLWRTDPVFQQVRRSPEPLRWS----QTQNRHSPNPALLEASRHGLTDG 124 Query: 118 IAFPVRLGFHKNGYVIFTSEFL---MLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 I+ G + +++ + + + + ++ NL Sbjct: 125 ISIG--YGAGNRTLISLAGSRQQIHAISSLACRVLPLLAPLIHSASVRIAHRQDIPDTNL 182 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +ERE L +G ++EEI+ L +S TV +L KLDAVNR AIAKA+R G I Sbjct: 183 SERERELLFWTAEGKSTEEISMILAISRDTVKYHLKRIYQKLDAVNRHHAIAKALRAGLI 242 >gi|117620077|ref|YP_855658.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561484|gb|ABK38432.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 264 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 42/233 (18%), Positives = 83/233 (35%), Gaps = 18/233 (7%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 + + + L++ F + + L FP Q + P ++TY Sbjct: 23 TAADERTIVTLLRELSGRMGFDYFRLA--LIFPSTIQ-----RPDVIIFNGCPQAWVDTY 75 Query: 73 G-------DDFLFHFNSGLLPIIWQSI-QEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D + + PI+W + +E + G+ ++L GI P Sbjct: 76 TSSGFFAIDPIVKCAMTKSTPILWADVVNDEERCDEQGREMMQLANEYGICDGITLPWHG 135 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSC 181 G + F + + + + + + S L+ RE Sbjct: 136 ANGHVGLLSFITSTPRTQQQWLSAVPFISWLSMHIFEAVARVCLAGLSPHDALSLRELEV 195 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + A +G +IA+ LG++ TV +L + KL A ++ QAI+ A++ G + Sbjct: 196 CRWAAEGKQVSDIAQILGITPRTVTFHLNNVVSKLGASSKSQAISWALKQGMV 248 >gi|260467388|ref|ZP_05813560.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259028848|gb|EEW30152.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 242 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 80/224 (35%), Gaps = 8/224 (3%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHN--YDLDSGDIPNIL 68 + S + + L R RNF + + +++++ + + + L Sbjct: 19 ARSAEAILHEFRLAMERYGLRNFLITGLPVPHGTDWQREILADGWSPEWHHRYVSEEYFL 78 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + P W + + + +L + GI P+ + Sbjct: 79 ----HDPCVAQCRHSPEPFRWAEL-PAARLVARAKLVMDEAAEFGMKEGICVPIHVPLAG 133 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGD 187 G V S+ + + + C L LT RE L+ + Sbjct: 134 PGVVTMASDRMDVPPSAMPLIETLCVHTFRSLSGLGTPGDGYEPTPLTARERELLEWSAQ 193 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G ++++IA LG++ +TV ++ + KLDA+N AI KA+R Sbjct: 194 GKSTDDIACILGVTRNTVESHQRNIRAKLDAINVAHAIVKALRR 237 >gi|260433332|ref|ZP_05787303.1| autoinducer-binding domain protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417160|gb|EEX10419.1| autoinducer-binding domain protein [Silicibacter lacuscaerulensis ITI-1157] Length = 230 Score = 128 bits (321), Expect = 8e-28, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 18/187 (9%) Query: 61 SGDIPNILIETYGDDFLFHFNS-------GLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + P+ YG H + + P+ W + + R Sbjct: 42 YANYPDEWKLHYGSQGYHHLDPTLYQAALSIAPVDWSRFNHDEKFNA----VFRDAHDFG 97 Query: 114 PFA-GIAFPVRLGFHKNGYVI-----FTSEFLMLANEVIIEAHGACYQVITDFLEL-FKK 166 G+ PVR + + G + +E+ L V+ + A Q ++ Sbjct: 98 ITDRGLTVPVRGPYGECGMLSVTKDCSDTEWKKLKRHVMGDLQMAAVQAHDTVMQSGVLA 157 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ +L+ RE LQ +G + ++I + L +S TV +L S KL A+ QAI Sbjct: 158 KALYLPSLSRREREILQWVAEGKSQQDIGDILSISHRTVEVHLRSGREKLGALTTAQAIG 217 Query: 227 KAIRFGY 233 +AI G Sbjct: 218 RAIGLGL 224 >gi|218682848|ref|ZP_03530449.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 230 Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 64/160 (40%), Gaps = 1/160 (0%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 F +P +W + + ++ L AGIA P + F Sbjct: 71 PFGLRLRESAVPPVWH-LNDAVNGQAFPAELRALMLRHAIPAGIAMPTITADGQRLVFWF 129 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E LA + E + + + + L+ RE ++ G TS EI Sbjct: 130 CGERAALAQSEVNELAMIILHALDAYNAVKRNEECTHNALSIRELEVVRWTAQGKTSIEI 189 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 190 GQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 229 >gi|241205786|ref|YP_002976882.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859676|gb|ACS57343.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 241 Score = 127 bits (320), Expect = 9e-28, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 62/161 (38%), Gaps = 3/161 (1%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLS-VRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 F +P W +L + L + AG+A P + Sbjct: 82 PFGVRLRQSAVPPAWHLNDASNGQAFPAELRALMLRHAIP--AGVAMPTIAADGQRLVFW 139 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F E L E + + + + A L+ RE ++ G TS E Sbjct: 140 FCGERAALGQSETNELAMIILHALDAYNAVKRNEECAHNALSTRELEVVRWTAQGKTSIE 199 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 200 IGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240 >gi|209550397|ref|YP_002282314.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536153|gb|ACI56088.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 241 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 63/161 (39%), Gaps = 3/161 (1%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLS-VRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 F +P W +L + L + AG+A P + Sbjct: 82 PFGLRLRESAVPPAWHLNDAANGQAFPAELRALMLRHAIP--AGVAMPTIAANGQRLVFW 139 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F E L + E + + + + A L+ RE ++ G TS E Sbjct: 140 FCGERAALGQSEVNELAMIILHALDAYNAVKRNEECAHNALSTRELEVVRWTAQGKTSIE 199 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 200 IGQILALSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 240 >gi|116253270|ref|YP_769108.1| LuxR/GerE family transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|115257918|emb|CAK09016.1| putative LuxR/GerE family transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 238 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 64/161 (39%), Gaps = 3/161 (1%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLS-VRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 F + +P W +L + L + AG+A P + Sbjct: 79 PFGVRLRASAVPPAWHLNDASNGQAFPAELRALMLRHAIP--AGVAMPTTAADGQRLVFW 136 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F E L I E + + + + A L+ RE ++ G TS E Sbjct: 137 FCGERAALGQSEINELVMIILHALDAYNAVKRNEECAHNALSNRELEVVRWTAQGKTSIE 196 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 197 IGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 237 >gi|197344631|gb|ACH69663.1| LuxR family transcriptional regulator [uncultured bacterium] Length = 238 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 13/221 (5%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLI----CELHNYDLDSGDIPNILIETYGDDFLFH 79 + ++ A + + RQ ++ Y + N Y D + H Sbjct: 22 MAAKMNAAAPQVLCEQALFGIELRQPMLPVIQHITSGYPEQYRHLYNDKGFIYRDPSVVH 81 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 + PI W ++ ++S + G + PVR + + Sbjct: 82 CQTRTDPIFWNE----SMYDASSYEIMEESQRFGLGHGFSVPVRESDKVVSMISLARDQP 137 Query: 140 MLANEVI-----IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E+ + V+ + + S L+ RE CL+ G ++ I Sbjct: 138 FTKQELEYIVPTAKVLATVMHVVAQKIIVPSMIESRQPRLSPRELECLRWVAQGKSNTVI 197 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 A+ L +S TV YL A KL R+QA+A + FG I Sbjct: 198 ADILKISDDTVAFYLRGALRKLGVSTRMQAVALCVTFGLIT 238 >gi|85713529|ref|ZP_01044519.1| Transcriptional regulatory protein, LuxR family protein [Nitrobacter sp. Nb-311A] gi|85699433|gb|EAQ37300.1| Transcriptional regulatory protein, LuxR family protein [Nitrobacter sp. Nb-311A] Length = 191 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 59/179 (32%), Gaps = 9/179 (5%) Query: 63 DIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 P E Y D + N+ P +W ++ + + Sbjct: 14 RWPKAWSERYFTQGYLFDDPTIQRVNTSTEPFLWSELEPSYRNTPAPTRVMGEAREFNLG 73 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 G P+ + SE + +V + L +K + A NLT Sbjct: 74 CGFTVPMITLDGQAAGFSLASERADVPPKVRRQLQLIAMHAFAR--ALAQKYNPAPVNLT 131 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQ +G + EI L +S H V+ KL+A NR Q A A+R I Sbjct: 132 PREMDILQWMAEGKSDWEIGVILKVSEHFVDKIARQLRAKLNATNRTQTAATALRHNLI 190 >gi|330992245|ref|ZP_08316193.1| Putative HTH-type transcriptional regulator y4qH [Gluconacetobacter sp. SXCC-1] gi|329760444|gb|EGG76940.1| Putative HTH-type transcriptional regulator y4qH [Gluconacetobacter sp. SXCC-1] Length = 244 Score = 127 bits (320), Expect = 1e-27, Method: Composition-based stats. Identities = 46/185 (24%), Positives = 70/185 (37%), Gaps = 11/185 (5%) Query: 58 DLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 L + P+ + Y D + GL P W+ I E + + +R G Sbjct: 61 HLIATTYPDHWMAHYVARNYHHIDPVIDPLRHGLHPYDWKDIHIENRRQDT---MLREFG 117 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS- 169 + +G A P+ L V S + + A Q + +L +K + Sbjct: 118 EMGFRSGHAVPLALAPGTLLLVSIASYDPHIDTRQQMAIQLAASQFHYRYHQLGRKHAGI 177 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE CL G + +I L LS +T+ +L +A KL NR+QA KA Sbjct: 178 TGTGLTRRERECLTWVAQGKDTADIGHILALSDNTIKFHLKNALRKLGCHNRVQAAVKAT 237 Query: 230 RFGYI 234 G I Sbjct: 238 CLGLI 242 >gi|12620901|gb|AAG61130.1|AF330019_1 AHL receptor [Burkholderia multivorans] Length = 239 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 74/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMTHYQAQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + R P G+A Sbjct: 71 YIEIDSTVRDGALSTNMIVWPDVDKIEPCP-----LWRDARDFGPSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K A LT RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFV-VPKLSPEARVALTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|260557627|ref|ZP_05829841.1| transcriptional activator protein phzR [Acinetobacter baumannii ATCC 19606] gi|260408800|gb|EEX02104.1| transcriptional activator protein phzR [Acinetobacter baumannii ATCC 19606] Length = 238 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 70/210 (33%), Gaps = 11/210 (5%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F + L+NY D + H + L P++W S Sbjct: 33 GFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYVERQYVKIDPTVQHCMASLQPLVWSS 92 Query: 92 IQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 +T + E G A R G + L+ + + Sbjct: 93 QSAKT----QAEKDFWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSNDQLSEKEQKAQY 148 Query: 151 GACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 Y + K + LT RE L+ +G TS EIA+ LG++ T Sbjct: 149 TNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERT 208 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN +L ++ KL+ N+I A +A+ G + Sbjct: 209 VNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|296156923|ref|ZP_06839760.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295892809|gb|EFG72590.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 234 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 64/189 (33%), Gaps = 19/189 (10%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG-GL 112 I TY D + H + P+IW + ++ Q S+ E Sbjct: 47 RSTYSPIWRRTYDEQGLVHIDPTVSHCATRATPLIWS----PDIFTTASQQSMYEEARAH 102 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSE-------FLMLANEVIIEAHGACYQVITDFLELFK 165 AG+ P+ + G + F ++ + + + + T L Sbjct: 103 GLRAGVTLPIHGPNQEAGMMCFVNDSNPSDEFWRHINVALPNLVLLRDLVIDTSQRHLNT 162 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT RE CL+ G ++ EI+ L S VN ++ + K +R A Sbjct: 163 HAQTLLPKLTPRERECLKWTARGKSTWEISHILNCSEAVVNFHMKNIRTKFGVNSRRAAA 222 Query: 226 AKAIRFGYI 234 A + G I Sbjct: 223 VIATQLGLI 231 >gi|163758447|ref|ZP_02165535.1| putative LuxR/GerE family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284736|gb|EDQ35019.1| putative LuxR/GerE family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 245 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 45/114 (39%), Positives = 53/114 (46%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 PV H V F + ++ + + S A LTERE Sbjct: 131 PVYHRDHGPAAVCFLGKRNQMSFSEAANLAMISSLAHQKLRRVSAQPSKADSPLTERERE 190 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL G TS EIA L LS HTVN YL +A KLDAVNR QA+A AIR G+I Sbjct: 191 CLVWTSSGKTSVEIARILSLSEHTVNHYLNNAARKLDAVNRTQAVALAIRQGFI 244 >gi|114704741|ref|ZP_01437649.1| putative transcription regulator protein [Fulvimarina pelagi HTCC2506] gi|114539526|gb|EAU42646.1| putative transcription regulator protein [Fulvimarina pelagi HTCC2506] Length = 226 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 73/204 (35%), Gaps = 4/204 (1%) Query: 36 YTINSALDFPRRQ----QLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 +T +AL P Q + N+ + ++ +P W Sbjct: 23 FTYAAALALPSTDEQGLQTRYLMGNWSHGFQRSYEAAELHRHKVVVATLSTDPMPFEWDI 82 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + + RL G+ PV G + F + + VI E Sbjct: 83 DTLYGISDPKPSKGARLVAEAGWSEGVLLPVHGMTAMCGALSFAGPNALPSRTVIYEMQS 142 Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + + + LT RE CL+LA G TS EI L LS +T++ YL + Sbjct: 143 FAFVFFGMLAAVRFDENRRNNPLTPRERDCLRLAMLGKTSSEIGIVLSLSEYTISQYLTA 202 Query: 212 ATVKLDAVNRIQAIAKAIRFGYIC 235 A KLDA NR +A A + GY+ Sbjct: 203 AQRKLDASNRTHTVAMAAQLGYLS 226 >gi|312115398|ref|YP_004012994.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii ATCC 17100] gi|311220527|gb|ADP71895.1| transcriptional regulator, LuxR family [Rhodomicrobium vannielii ATCC 17100] Length = 251 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 86/234 (36%), Gaps = 11/234 (4%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 K S + L + + ++L T + +L L+C NY D + + Sbjct: 16 AKSSKEVSALFGKALAVFGY-DRYCYSLITDHPSLGLNAGHGLVC---NYPDDWMEHYRL 71 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + S P W S+ + + GIA PV Sbjct: 72 NQYEKKDPVPQYGISASRPFTWASVVAQRKWHPDQMKVMHEAEEARLCDGIAVPVCGVNG 131 Query: 128 K-NGYVIFTSEFLMLANEVIIE-AHGACYQVITDFLELFKKRSSAARNL-----TERETS 180 + G+ I +S + + ++ Q F EL K + NL TERE Sbjct: 132 ELAGFGIASSHGGVSPDRTLLHKVQALAIQFHLAFTELEKIETPLTENLAEVYLTEREKE 191 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + A +G + IAE LG+S TV ++ + KL+A R A KAIR G I Sbjct: 192 IMSWAAEGKSDSVIAEILGVSHSTVRFHMNNVFKKLNANERTLATVKAIRHGLI 245 >gi|218673112|ref|ZP_03522781.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 96 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 65/96 (67%), Positives = 79/96 (82%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 L++++I+E HG C ++ D L L ++R+ AA L+ERE +CLQLAGDG SEEIAEKLG Sbjct: 1 DLSSDMIVELHGRCCHIMMDLLSLDERRTGAAEALSEREIACLQLAGDGRISEEIAEKLG 60 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 LSVHTVNAYLGSAT+KLD+VNRIQAIAKAIR GYI Sbjct: 61 LSVHTVNAYLGSATIKLDSVNRIQAIAKAIRLGYIS 96 >gi|332875591|ref|ZP_08443403.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6014059] gi|332736164|gb|EGJ67179.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6014059] Length = 238 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 69/210 (32%), Gaps = 11/210 (5%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F + L+NY D + H L P++W S Sbjct: 33 GFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYVEGQYVKIDPTVQHCMVSLQPLVWSS 92 Query: 92 IQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 +T + E G A R G + L+ + + Sbjct: 93 QSAKT----QAEKDFWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSNDQLSEKEQKAQY 148 Query: 151 GACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 Y + K + LT RE L+ +G TS EIA+ LG++ T Sbjct: 149 TNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERT 208 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN +L ++ KL+ N+I A +A+ G + Sbjct: 209 VNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|182375406|emb|CAQ15951.1| vR protein [Pseudomonas fuscovaginae] Length = 239 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 17/189 (8%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + P+ + Y D + H S LPI+W+ +T E R G Sbjct: 53 MSNFPDAWRDLYDNENYSSIDPVVSHSFSSSLPILWEDKLYKTRREKEFAEDARRAG--- 109 Query: 114 PFAGIAFPVRLGFHKNGYVIFTS------EFLMLANEVIIEAHGACYQVITDFLELF-KK 166 G+ P+ + G + + E+L + I A +T LF Sbjct: 110 LSHGLTLPIHGPQGQVGMLSLSCAPMPQNEYLQVLQHSIAAASMLRDYAVTSGSSLFLHN 169 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 SS A +LT RE L A T+ EI + L L+ TV + + KL+ +R A+A Sbjct: 170 SSSTAPHLTPRELEILHWAWAEKTTWEIGKILSLAEPTVEFHFKNIRRKLNVSSRRLAVA 229 Query: 227 KAIRFGYIC 235 +AI+ + Sbjct: 230 RAIQLDLMT 238 >gi|313110609|ref|ZP_07796491.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310882993|gb|EFQ41587.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 226 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 70/218 (32%), Gaps = 11/218 (5%) Query: 23 LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82 L+ F ++ + FP L NY + T D + H Sbjct: 13 LVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLL 72 Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 P+IW + + G + PVR + + +A Sbjct: 73 EYTPLIWNGEDFQ-----ENRFFWEEALHHGIRHGWSIPVRGKYGLISMLSLVRSSESIA 127 Query: 143 NEVIIEAHGACYQVITDFLELF------KKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 I+E + + F + + LT RET L+ G T EI Sbjct: 128 ATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKTYGEIGL 187 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + TV ++ +A KL++ N+ +A KA G + Sbjct: 188 ILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 225 >gi|209518837|ref|ZP_03267650.1| transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209500722|gb|EEA00765.1| transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 269 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 79/236 (33%), Gaps = 30/236 (12%) Query: 24 IQNRIKARNFA-LYTINSALDFPR--RQQLICELHNYDLDSGD------IPNILIETYG- 73 + + A N A + + + L + L+ L + D + Y Sbjct: 36 MAPLLDAANEAEWFGVITGLSETWGFDRILVAMLPRPTMRLEDAYLRSTYAPAWRQAYDE 95 Query: 74 ------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG-LLPFAGIAFPVRLGF 126 D + H S P+IW + + Q S+ E AG+ P+ Sbjct: 96 QGMVHFDPTVAHCLSRSGPLIWT----PEIFATPAQQSLYEEARSYGLGAGVTLPIHGPN 151 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVI--------TDFLELFKKRSSAARNLTERE 178 + G + F ++ ++ + A ++ T L + LT RE Sbjct: 152 QEAGMMCFVND-DKPSDGFRRHVNAALPNLVLLRDLVIDTSRQHLNSHAQTLLPKLTPRE 210 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL+ G ++ EI+ L S VN ++ + K +R A A + G I Sbjct: 211 RECLKWTARGKSTWEISHILSCSEAVVNFHMKNIRTKFGVNSRRAAAVIAAQLGLI 266 >gi|170697219|ref|ZP_02888313.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170137839|gb|EDT06073.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 237 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 79/239 (33%), Gaps = 32/239 (13%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S ++ ++A F + + P + + + P ++ Sbjct: 15 AKSEADVFLEFTA---DVRALGFEYCSFGLRIPLPVSK-------PQFMLQSNYPQTWVD 64 Query: 71 TYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 Y D + H S + P+IW++ + +E G P Sbjct: 65 RYVSQNYFAVDPTVRHGLSQMSPLIWRADSQTQSVE-----FWDEAEHHGLRHGWCMPSI 119 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE--------AHGACYQVITDFLELFKKRSSAARNLT 175 G V + + E A+ A Y + L F A LT Sbjct: 120 SRTGAIGLVTMVRSGEPIDERELAEKGYQMSWLANMANYAMSMHLLARFV--PEYAVELT 177 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQ + G T EI + + + TV +L +A KL+A N+ +A KA G + Sbjct: 178 ARERETLQWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNATNKTEAAVKAAMLGLL 236 >gi|15597095|ref|NP_250589.1| quorum-sensing control repressor [Pseudomonas aeruginosa PAO1] gi|116049852|ref|YP_791341.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|218892145|ref|YP_002441012.1| quorum-sensing control repressor [Pseudomonas aeruginosa LESB58] gi|254234991|ref|ZP_04928314.1| quorum-sensing control repressor [Pseudomonas aeruginosa C3719] gi|254240292|ref|ZP_04933614.1| quorum-sensing control repressor [Pseudomonas aeruginosa 2192] gi|6014709|gb|AAF01471.1|AF190630_1 PhzR [Pseudomonas aeruginosa PAO1] gi|9947891|gb|AAG05287.1|AE004616_1 quorum-sensing control repressor [Pseudomonas aeruginosa PAO1] gi|115585073|gb|ABJ11088.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|126166922|gb|EAZ52433.1| quorum-sensing control repressor [Pseudomonas aeruginosa C3719] gi|126193670|gb|EAZ57733.1| quorum-sensing control repressor [Pseudomonas aeruginosa 2192] gi|218772371|emb|CAW28153.1| quorum-sensing control repressor [Pseudomonas aeruginosa LESB58] Length = 237 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 70/218 (32%), Gaps = 11/218 (5%) Query: 23 LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82 L+ F ++ + FP L NY + T D + H Sbjct: 24 LVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLL 83 Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 P+IW + + G + PVR + + +A Sbjct: 84 EYTPLIWNGEDFQ-----ENRFFWEEALHHGIRHGWSIPVRGKYGLISMLSLVRSSESIA 138 Query: 143 NEVIIEAHGACYQVITDFLELF------KKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 I+E + + F + + LT RET L+ G T EI Sbjct: 139 ATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKTYGEIGL 198 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + TV ++ +A KL++ N+ +A KA G + Sbjct: 199 ILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 236 >gi|209886745|ref|YP_002290602.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans OM5] gi|209874941|gb|ACI94737.1| transcriptional regulator, LuxR family [Oligotropha carboxidovorans OM5] Length = 195 Score = 127 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 64/178 (35%), Gaps = 7/178 (3%) Query: 64 IPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 P+ Y D + W + + + Sbjct: 17 FPDGWAARYLDQNYLPRDPIVGRLQKDRNAFSWSESYKSCPEPDNVRAVGGEAADFGLVE 76 Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 G P+ + + F L+N I +L L + R + + L+ Sbjct: 77 GFVIPITTLDQRIAALSFGGARDDLSNRDRSALIFLANFAIGHWLYLRRPRPTCNKTLSP 136 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE CL AG+G T EI+ LG+S TV ++ SA KL+AVN+ AIA A+R + Sbjct: 137 RELDCLLWAGEGKTDWEISVILGISRSTVTKHITSAREKLNAVNKPHAIAIAMRLKIL 194 >gi|238027274|ref|YP_002911505.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] gi|237876468|gb|ACR28801.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 237 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 81/231 (35%), Gaps = 14/231 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +SS +E+S LI+ + + +P + I L NY Sbjct: 15 ASSEREIS---ILIEGAANHLGYEFCGYGLRIPWPVSRPKIYLLSNYPEAWKQRYMEAGY 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + H P++W S R G + +G Sbjct: 72 IDIDPTMKHMRRFQTPVVWTD-----AFFSRTPELWRDAQAHGLRHGWSQSTFDSCGVSG 126 Query: 131 YVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + + + NE + + + + + K R LT+RE L+ Sbjct: 127 MLTLARSTGPVTPAELERNEFRMRWLVSTTHLAMTRVLMPKLMPDTERGLTDREVEVLKW 186 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 A DG TS EI+ L +SV TVN ++ +A KL VN+ A+ +A G + Sbjct: 187 AADGKTSGEISTILRISVDTVNFHVKNAVAKLKTVNKTSAVVRAAMLGLLS 237 >gi|169797684|ref|YP_001715477.1| autoinducer-binding transcriptional regulator [Acinetobacter baumannii AYE] gi|213155522|ref|YP_002317567.1| eR transcriptional regulator [Acinetobacter baumannii AB0057] gi|215485038|ref|YP_002327279.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB307-0294] gi|239503083|ref|ZP_04662393.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB900] gi|301348492|ref|ZP_07229233.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB056] gi|301513441|ref|ZP_07238678.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB058] gi|301597204|ref|ZP_07242212.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB059] gi|332853574|ref|ZP_08434826.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013150] gi|332869309|ref|ZP_08438707.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013113] gi|169150611|emb|CAM88520.1| putative Autoinducer-binding transcriptional regulator (LuxR family) [Acinetobacter baumannii AYE] gi|193076010|gb|ABO10598.2| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978] gi|213054682|gb|ACJ39584.1| eR transcriptional regulator [Acinetobacter baumannii AB0057] gi|213987791|gb|ACJ58090.1| Transcriptional activator protein phzR [Acinetobacter baumannii AB307-0294] gi|323516195|gb|ADX90576.1| autoinducer-binding transcriptional regulator [Acinetobacter baumannii TCDC-AB0715] gi|332728538|gb|EGJ59911.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013150] gi|332732817|gb|EGJ64032.1| putative autoinducer-binding transcriptional regulator BmaR5 [Acinetobacter baumannii 6013113] Length = 238 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 69/210 (32%), Gaps = 11/210 (5%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F + L+NY D + H L P++W S Sbjct: 33 GFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYVERQYVKIDPTVQHCMVSLQPLVWSS 92 Query: 92 IQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 +T + E G A R G + L+ + + Sbjct: 93 QSAKT----QAEKDFWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSNDQLSEKEQKAQY 148 Query: 151 GACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 Y + K + LT RE L+ +G TS EIA+ LG++ T Sbjct: 149 TNMYWLTQTVHSSIAKIVNDVEFAKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERT 208 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN +L ++ KL+ N+I A +A+ G + Sbjct: 209 VNFHLSNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|171316408|ref|ZP_02905627.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171098441|gb|EDT43244.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 237 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 79/239 (33%), Gaps = 32/239 (13%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S ++ ++A F + + P + + + P ++ Sbjct: 15 AKSEADVFLEFTA---DVRALGFEYCSFGLRVPLPVSK-------PQFMLQSNYPQTWVD 64 Query: 71 TYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 Y D + H S + P+IW++ + +E G P Sbjct: 65 RYVSQNYFAVDPTVRHGLSQMSPLIWRADSQTQSVE-----FWDEAEHHGLRHGWCMPSI 119 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE--------AHGACYQVITDFLELFKKRSSAARNLT 175 G V + + E A+ A Y + L F A LT Sbjct: 120 SRTGAIGLVTMVRSGEPIDERELAEKGYQMSWLANMANYAMSMHLLAKFV--PEYAVELT 177 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQ + G T EI + + + TV +L +A KL+A N+ +A KA G + Sbjct: 178 ARERETLQWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNATNKTEAAVKAAMLGLL 236 >gi|167564011|ref|ZP_02356927.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167571156|ref|ZP_02364030.1| transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 238 Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 84/222 (37%), Gaps = 15/222 (6%) Query: 24 IQNRIKAR-NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82 I +RI AR F + + D + + + + NY + + D + H Sbjct: 21 ILSRIAARLGFDYFFYGTLSDMRKPENPVKTVSNYPMAWQEKYKSSGYIRIDPVVRHCGH 80 Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEG-GLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 L+P+ W + + Q + + G AG +FPV + + S Sbjct: 81 RLIPLQWN----DGICHCREQRNFMEDARGHGLVAGASFPVHSRHGEVSILSLASRSAGG 136 Query: 142 ANEVIIE------AHGA-CYQVITDFLELFKKRSS--AARNLTERETSCLQLAGDGYTSE 192 + + A GA + + +E R + LT RE CL+ G +S Sbjct: 137 TTSLSAKHAPATFAQGALAAAFVREGMERISNRPDHEPSAPLTHRELECLKWIAAGKSSW 196 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA LG+S + V ++ K D +R A+ KA+ G + Sbjct: 197 EIAMILGISENGVLYHVKKLMAKFDVQSRHLAVLKAMASGVV 238 >gi|6572977|gb|AAF17494.1|AF195615_2 transcriptional activator PhzR [Pseudomonas chlororaphis] Length = 241 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 75/232 (32%), Gaps = 18/232 (7%) Query: 16 ELSPRLHLIQNRIKARN-------FALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + R +Q F + P + C NY D Sbjct: 15 NIFARTMDMQEFTAVTLRVLRELRFDFFAYGMCSVTPFMRPRTCMYGNYPEDWVQRYQAA 74 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + H PI+W + + G+A P + Sbjct: 75 NYAVIDPTVKHSKVSSAPILWSNELFRGCPD-----LWSEANDSNLCHGLAQPSFNAQGR 129 Query: 129 NGYVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + S A +++ +A A LE + + + RE L Sbjct: 130 VGMLSLARKDNPISLQEFEALKLMTKAFAAAIHEKISELESDVRVFNTDVEFSGRECDVL 189 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + DG TSEEI +G+ TVN + + K+ A NR+QA++ A+ GYI Sbjct: 190 RWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAVSYAVAMGYI 241 >gi|325124101|gb|ADY83624.1| probable transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Acinetobacter calcoaceticus PHEA-2] Length = 238 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 43/210 (20%), Positives = 70/210 (33%), Gaps = 11/210 (5%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F + L+NY D + H L P++W S Sbjct: 33 GFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYMEQQYVKIDPTVQHCMVSLQPLVWSS 92 Query: 92 IQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 ++ + E G A R G + L+ + + Sbjct: 93 ----QFAKTQEEKDFWEEARSYGLNVGWAQSSRDFIGTRGMLTLARSNDQLSEKEQKAQY 148 Query: 151 GACYQVITDFLELFKKRSSAAR------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 Y + K + LT RE L+ +G TS EIA+ LG++ T Sbjct: 149 TNMYWLSQTVHSSIAKVVNEVEFAQFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERT 208 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 VN +LG++ KL+ N+I A +A+ G + Sbjct: 209 VNFHLGNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|152985537|ref|YP_001348746.1| putative transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150960695|gb|ABR82720.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 237 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 68/215 (31%), Gaps = 11/215 (5%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 F ++ + FP L NY + T D + H + Sbjct: 27 EICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLLEYM 86 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV 145 P+IW + + G + PVR + +A Sbjct: 87 PLIWNGEDFQ-----ENRFFWEEALHHGIRHGWSIPVRGKYGLISMFSLVRSAESIAAAE 141 Query: 146 IIEAHGACYQVITDFLELF------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 I+E + + F + + LT RET L+ G T EI L Sbjct: 142 ILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKTYGEIGLILS 201 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + TV ++ +A KL++ N+ +A KA G + Sbjct: 202 IDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 236 >gi|146277748|ref|YP_001167907.1| autoinducer-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145555989|gb|ABP70602.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC 17025] Length = 233 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 70/187 (37%), Gaps = 16/187 (8%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + P+ Y D + + P+ W + + + G+ Sbjct: 47 YANYPDSWKMHYMRRNLHRVDPTIHKSALSIAPVDWARFERDERFR--AVFFAAEDFGIT 104 Query: 114 PFAGIAFPVRLGFHKNGYVIFT-----SEFLMLANEVIIEAHGACYQVITDFLELFK-KR 167 P G+ PVR + G + T S++ L I + A + + R Sbjct: 105 P-QGLTVPVRGPYGDRGLLSVTRRCPRSDWDKLKRAAIGDLQVAAVHLHDAVMRSDVISR 163 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L+ RE LQ G + +I + LG+S TV +L SA KL ++ +QA+ + Sbjct: 164 ALRQPRLSTREIEVLQWVAAGKSQMDIGDILGISHRTVEVHLRSAREKLGTLSTVQAVGR 223 Query: 228 AIRFGYI 234 AI G + Sbjct: 224 AIGLGLV 230 >gi|222106725|ref|YP_002547516.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4] gi|221737904|gb|ACM38800.1| DNA-binding HTH domain-containing protein [Agrobacterium vitis S4] Length = 307 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 83/237 (35%), Gaps = 16/237 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTI-NSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + S E+ + + + F+ + + L+ + ++NY + + Sbjct: 54 AAVSAAEMKAVMESSIKSLGYKYFSYHILQTPVLNATNETRHTFGINNYPEEWVERYASE 113 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 Y D + S P W + + + + G+ P+ + Sbjct: 114 RYVYCDPIVGISLSRKTPFRWSDAIDSDKLTEEERCVIEDAAKRGIVNGLTVPLMSRHGE 173 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-----------LFKKRSSAARNLTER 177 + + + + EAH +I+ F L L+ R Sbjct: 174 LAIMTVIPDEKF--QDSLPEAHLI--HIISQFFHSCALPVVMEEHLIGSYRRRRSFLSAR 229 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + G +S EIA+ LG+S +V Y+ S KL+AVNR QA+ KAI G I Sbjct: 230 EKETVIWVSKGKSSWEIAKILGISEKSVEFYMESVKRKLEAVNRTQAVVKAIMLGLI 286 >gi|14586754|gb|AAK70349.1|AF333004_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans ATCC BAA-247] Length = 239 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 74/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPSVAIFDTYPDGWMAHYQAHN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + + G+A Sbjct: 71 YIEIDSTVRDGALSTNMIVWPDVDQIAPCP-----LWQDARDFGLSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K +A LT RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-VPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|75674825|ref|YP_317246.1| LuxR family transcriptional regulator [Nitrobacter winogradskyi Nb-255] gi|74419695|gb|ABA03894.1| Transcriptional regulatory protein, LuxR family [Nitrobacter winogradskyi Nb-255] Length = 241 Score = 126 bits (316), Expect = 3e-27, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 68/203 (33%), Gaps = 6/203 (2%) Query: 36 YTINSALDFP----RRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 + + + P +Q LH + + + D + N+ P +W Sbjct: 40 HVLAGIIPIPGMTAEQQISNVVLHRWPKAWSERYFTKGYLFDDPTIQRVNTSTEPFLWSE 99 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 ++ + + G P+ + SE + + + + Sbjct: 100 LEPTYRNTPAPTRVMGEAREFNLGCGFTVPMITLNGQTAGFSLASERAEVPSILRGQLQL 159 Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 L +K A NLT RE LQ +G + EI+ L +S H V+ Sbjct: 160 IAMYAFAR--ALGQKYKPAPVNLTPREMDILQWMAEGKSDWEISVILKVSEHLVDKIARQ 217 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL+A NR Q +A A+R I Sbjct: 218 LRAKLNATNRTQTVAVALRHNLI 240 >gi|77463693|ref|YP_353197.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|126462526|ref|YP_001043640.1| autoinducer-binding domain-containing protein [Rhodobacter sphaeroides ATCC 17029] gi|221639538|ref|YP_002525800.1| Autoinducer-binding domain-containing protein [Rhodobacter sphaeroides KD131] gi|332558550|ref|ZP_08412872.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N] gi|2360976|gb|AAC46021.1| autoinducer sythesis regulator [Rhodobacter sphaeroides] gi|77388111|gb|ABA79296.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides 2.4.1] gi|126104190|gb|ABN76868.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides ATCC 17029] gi|221160319|gb|ACM01299.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides KD131] gi|332276262|gb|EGJ21577.1| Autoinducer-binding domain protein [Rhodobacter sphaeroides WS8N] Length = 233 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 70/187 (37%), Gaps = 16/187 (8%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + P+ Y D + + P+ W + + + G+ Sbjct: 47 YANYPDSWKMHYMRRNLHRVDPTIHKSALSIAPVDWSRFERDERFR--AVFFAAEDFGIT 104 Query: 114 PFAGIAFPVRLGFHKNGYVIFT-----SEFLMLANEVIIEAHGACYQVITDFLELFK-KR 167 P G+ PVR + G + T E+ VI E A + + R Sbjct: 105 P-QGLTVPVRGPYGDRGLLSVTRNCARPEWEKHKRAVIGELQVAAVHLHDAVMRSDVISR 163 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L+ RE LQ A G + +I + LG+S TV +L SA KL ++ +QA+ + Sbjct: 164 ALRQPRLSTREIEVLQWAAAGKSQTDIGDILGISHRTVEVHLRSAREKLGTLSTVQAVGR 223 Query: 228 AIRFGYI 234 AI G + Sbjct: 224 AIGLGLV 230 >gi|221196069|ref|ZP_03569116.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2M] gi|221202743|ref|ZP_03575762.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2] gi|221176677|gb|EEE09105.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2] gi|221182623|gb|EEE15023.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia multivorans CGD2M] Length = 239 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 73/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + R G+A Sbjct: 71 YIEIDSTVRDGTLSTNMIVWPDVDKIEPCP-----LWRDARDFGLSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K A LT RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-VPKLSPEARVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGASNKVQAVVKAISAGLI 236 >gi|193890916|gb|ACF28617.1| quorum sensing regulator [Mesorhizobium tianshanense] Length = 275 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 82/245 (33%), Gaps = 18/245 (7%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 MS T ++ L + L+Q A + L T+ + L + + Sbjct: 34 MSGLDATLEEIGQLGDAEKIPALLQRI--AERYGLKTV-AYLGTGTLDRRVPRQE--PFI 88 Query: 61 SGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + P +E Y D + LLPI W + Q L Sbjct: 89 AVTYPPEWVERYRARGYINIDPAIQIGLRRLLPIDWDEFGKAE--GDLRQFFGEASEFGL 146 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-- 171 GI+FPV T++F + +I L R+ Sbjct: 147 GLRGISFPVHGCGGDRALFSVTADFSKREWHWARRTAFRHFPIIAAHLHEAVLRTDGVFR 206 Query: 172 --RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE CL+ +G T E LGLS HTV YL SA KL A + A + A Sbjct: 207 SQPRLSPRELECLRWTSEGKTVWECGVILGLSPHTVRCYLESARHKLGASSNTHAASLAT 266 Query: 230 RFGYI 234 + G + Sbjct: 267 KSGLL 271 >gi|70732607|ref|YP_262370.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens Pf-5] gi|68346906|gb|AAY94512.1| autoinducer-binding transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 252 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 47/193 (24%), Positives = 73/193 (37%), Gaps = 28/193 (14%) Query: 65 PNILIETYGDDFLFHFN-------SGLLPIIWQSIQEETVIESSGQLSVRLE-----GGL 112 P +E + D +H + P IW E + Sbjct: 63 PRDWLELWCDQGYYHIDPVQQVALDSSSPFIWSYKPEAETVLRQALGQQHAPVSSYLHHH 122 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTS-----------EFLMLANEVIIEAHGACYQVITDFL 161 G+ P+ L G+ T + + + AH + + Sbjct: 123 QMAHGMTVPIHLPRG--GFASLTGLRSGNATVALQDLQQVQGHFTLLAHALQEHL---YP 177 Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L K S +LT RE CL+ A +G TS EIAE+L S T+N +L SA KL A NR Sbjct: 178 QLSKCVRSYPVDLTRRERECLKWAAEGMTSGEIAERLQRSQATINLHLTSAMHKLGARNR 237 Query: 222 IQAIAKAIRFGYI 234 +QA+ +A+ + + Sbjct: 238 VQAVVRAVHYRLL 250 >gi|294340032|emb|CAZ88396.1| autoinducer-binding transcriptional regulator LuxR family [Thiomonas sp. 3As] Length = 237 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 80/232 (34%), Gaps = 14/232 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + +L + + + + F + + P + + L NY + Sbjct: 13 QTITCDAQLFEIVVSMVHSL---GFDHCSYGLRMPLPVSRPKVVLLTNYPRAWENRYTEK 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + H L P++W +S + G A R Sbjct: 70 GYLAVDPTVRHGTHSLQPVVWSD-----AFFASSRDLWEEARSFGLCVGWAQSSRDVNST 124 Query: 129 NGYVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + + SE + E+ + + + K + LT+RE L Sbjct: 125 MGLLSVSRSGEPISEIELRDKEMQLAWLTQMVHLGMSRILTAKLMPAVTAPLTDREIEVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + DG T+ EIA+ L +S T N ++ +A KL A N+ A+ +A G + Sbjct: 185 RWTADGKTASEIADILNISERTANFHIANAIAKLHAPNKTAAVIRAGMLGML 236 >gi|12620899|gb|AAG61129.1|AF330018_1 AHL receptor [Burkholderia cepacia ATCC 25416] gi|17939926|emb|CAD19536.1| CepR protein [Burkholderia cepacia] gi|288551614|gb|ADC53303.1| transcriptional activator [Burkholderia cepacia] Length = 239 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 74/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPSVAIFDTYPDGWMAHYQAHN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + + G+A Sbjct: 71 YIEIDSTVRDGALSTNMIVWPDVDQIEPCP-----LWQDARDFGLSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K +A LT RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-VPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|328542134|ref|YP_004302243.1| LuxR family transcriptional regulator [polymorphum gilvum SL003B-26A1] gi|326411884|gb|ADZ68947.1| LuxR family transcriptional regulator [Polymorphum gilvum SL003B-26A1] Length = 217 Score = 125 bits (315), Expect = 4e-27, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 66/188 (35%), Gaps = 18/188 (9%) Query: 63 DIPNILIETYGD-------DFLFHFNSGLLPIIWQS--IQEETVIESSGQLSVRLEGGLL 113 + + Y D + LLP W S E E + E GL Sbjct: 30 TFSDAWRDHYIDSSYHLIDPVILKGPERLLPFTWSSMSFGIEPTDEQKSFFAEAEEFGLG 89 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT-------DFLELFKK 166 G+ PV + + +E ++ HG +I+ L + Sbjct: 90 --EGLGIPVHGAYGSLAMISMVAEEETRRLARMLHHHGEDVHLISLIFHNLARELMALGR 147 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + +L+ RE CL +G T EI+ LG+S TV + + K +R + I Sbjct: 148 CGRSPISLSPRERECLIWLANGKTRWEISLILGISEETVKYHFKNIRAKFGTYSRHEIII 207 Query: 227 KAIRFGYI 234 +A+R G I Sbjct: 208 QAVRLGLI 215 >gi|15966467|ref|NP_386820.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15075738|emb|CAC47293.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021] Length = 247 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 58/219 (26%), Positives = 91/219 (41%), Gaps = 9/219 (4%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLI--CELHNYDLDSGDIPNILIETYGDDFLF 78 LHL++ I FA + + + L Q+ L N+ + + + + Sbjct: 33 LHLMRRLISRYGFA-HFMIARLPLADEQRFSERLVLSNWPAELVQQYDAGETFQTSELVE 91 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG---IAFPVRLGFHKNGYVIFT 135 LP+ + E + + L P AG A + + + + + Sbjct: 92 RLRQTKLPV---TGGPELMEPAGKGAGKAAFIRLPPHAGMGHFAVLLHTTYGEPFVAVLS 148 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 A + A Q+ F S A L+ RE CL+ A G +S+EIA Sbjct: 149 GTRDEPAGAERATLYLALLQLFECLERTFDAGSGAREKLSSREVECLRWAAAGKSSDEIA 208 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S +TV++Y SAT KLDAVNR+QAIA+A+R I Sbjct: 209 IILGISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 247 >gi|304394107|ref|ZP_07376030.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130] gi|303293547|gb|EFL87924.1| transcriptional activator protein ahyr/asar [Ahrensia sp. R2A130] Length = 240 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 94/229 (41%), Gaps = 6/229 (2%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + ++ + N A F++ T++ ++ +N+D + + + Sbjct: 15 RLETAYDVFRYARRLGNDFGASRFSILTLDKQTSAISDLGVV---NNWDPELIAVYDENG 71 Query: 70 ETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + L HF +G + + + S L+ L G PV G Sbjct: 72 LSKASPVLGHFETGNRVMTYDMDTMLQERAPESAALARELFNDFDMKYGACCPVNDGKGN 131 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAG 186 G ++F+ L+L + H + +++ S +L+ RE CL A Sbjct: 132 RGGLVFSGNELVLNPDDGAMLHLLSNYLYDHLVQISATSVTRSEMPSLSGREMDCLSHAA 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G TS+E A L LS HTV YL A KL+AVNR+ A+AKA+R G + Sbjct: 192 LGKTSKETARDLELSDHTVTHYLALACKKLEAVNRVHAVAKALRLGLLS 240 >gi|254254249|ref|ZP_04947566.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa AUO158] gi|12620909|gb|AAG61134.1|AF330023_1 AHL receptor [Burkholderia cepacia] gi|124898894|gb|EAY70737.1| DNA-binding HTH domain-containing protein [Burkholderia dolosa AUO158] Length = 239 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 78/232 (33%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAKN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + +SS E GL G+A Sbjct: 71 YIDIDSTVRDGALSTNMIVWPDVD---GADSSPLWRDAREFGLSV--GVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K A+ LT RE L Sbjct: 126 GLLSIARRADRLTPAEINMLTLQTNWLANLSHSLMSRFM-VPKLSPEASVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|115358865|ref|YP_776003.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|13508495|gb|AAK27306.1| AHL receptor [Burkholderia ambifaria] gi|115284153|gb|ABI89669.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 239 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 75/232 (32%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMARYQAQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + G+A Sbjct: 71 YIEIDSTVRDGAMSTNMIVWPDVDRIDPCP-----LWQDARDYGLSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ L K ++ LT RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-LPKLSPESSVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 RWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236 >gi|328542321|ref|YP_004302430.1| N-acyl homoserine lactone transcriptional regulator, LuxR-like protein [polymorphum gilvum SL003B-26A1] gi|326412068|gb|ADZ69131.1| Putative N-acyl homoserine lactone transcriptional regulator, LuxR-like protein [Polymorphum gilvum SL003B-26A1] Length = 230 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 59/187 (31%), Gaps = 14/187 (7%) Query: 63 DIPNILIETYGD-------DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 P+ Y D + + S + P W ++ + Sbjct: 43 TFPDAWYSHYIDNGYHRVDPVILNGPSQVAPFTWSAMSFGMEPSPEQRRLFAEATEFGLG 102 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT-------DFLELFKKRS 168 G+ P+ S+ ++ G +++ L + Sbjct: 103 EGVGIPIHGARGSLAMASMVSDHGARGLARLMSTVGKDVHLMSLAFHNHARELLALGRSG 162 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE CL G ++ EI+ LG+S TV +L + K+ N A+ KA Sbjct: 163 RTTVSLTRRERECLLWIAAGKSAWEISRILGISARTVYFHLDNVRAKMGVTNVYHAVVKA 222 Query: 229 IRFGYIC 235 I G I Sbjct: 223 IMEGMIS 229 >gi|107025997|ref|YP_623508.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116692818|ref|YP_838351.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170737931|ref|YP_001779191.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105895371|gb|ABF78535.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116650818|gb|ABK11458.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] gi|169820119|gb|ACA94701.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 239 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 74/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMAHYQAQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + G+A Sbjct: 71 YIEIDSTVRDGALSTNMIVWPDVDRIDPCP-----LWQDARDFGLSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K +A LT RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-VPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|163760010|ref|ZP_02167094.1| putative transcription regulator protein [Hoeflea phototrophica DFL-43] gi|162282968|gb|EDQ33255.1| putative transcription regulator protein [Hoeflea phototrophica DFL-43] Length = 247 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 71/221 (32%), Gaps = 9/221 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + F + + + + D ++ D L + Sbjct: 27 LSKVVAGLGFDFFKLVRQAGPESGAVDMILAEQWPSDWPELYAKRKYATIDPTLRYLGHS 86 Query: 84 LLPIIWQSIQEETVIES---SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM 140 W+ E + + + G FPV GY+ ++ Sbjct: 87 QGGFRWREPMEAYQEDPHYKRMERMMADARRFGLEDGYVFPVHGRRGLVGYLTIAGGYVE 146 Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGDGYTSEEI 194 L + + + +EL + N +T+RE L+ G G TS E+ Sbjct: 147 LLRSEMAMMDALAKKAFWELVELLDPAAHERLNRPVTMQMTKREMQTLEYLGCGMTSNEM 206 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 LGLS HTV+ Y+ KL A NR +A A R G I Sbjct: 207 GTALGLSAHTVDWYMNGIQEKLHAKNRHHVVAIAFRLGLIS 247 >gi|14586756|gb|AAK70350.1|AF333005_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia stabilis] Length = 239 Score = 125 bits (314), Expect = 5e-27, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 76/232 (32%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPSVAIFDTYPDGWMARYQAQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + E GL G+A Sbjct: 71 YIEIDSTVRDGALSTNMIVWPDVDRS---DPGPLWQDAREFGLSV--GVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K +A LT RE L Sbjct: 126 GLLSIARHADRLTPAEINILTLQTNWLASLSHSLMSRFM-VPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|49081930|gb|AAT50365.1| PA1898 [synthetic construct] Length = 238 Score = 125 bits (314), Expect = 6e-27, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 70/218 (32%), Gaps = 11/218 (5%) Query: 23 LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82 L+ F ++ + FP L NY + T D + H Sbjct: 24 LVLEICGNYGFEFFSFGARAPFPLTAPKYHFLSNYPGEWKSRYISEDYTSIDPIVRHGLL 83 Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 P+IW + + G + PVR + + +A Sbjct: 84 EYTPLIWNGEDFQ-----ENRFFWEEALHHGIRHGWSIPVRGKYGLISMLSLVRSSESIA 138 Query: 143 NEVIIEAHGACYQVITDFLELF------KKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 I+E + + F + + LT RET L+ G T EI Sbjct: 139 ATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKTYGEIGL 198 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + TV ++ +A KL++ N+ +A KA G + Sbjct: 199 ILSIDQRTVKFHIVNAVRKLNSSNKAEATMKAYAIGLL 236 >gi|262281348|ref|ZP_06059129.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus RUH2202] gi|262257174|gb|EEY75911.1| transcriptional activator protein phzR [Acinetobacter calcoaceticus RUH2202] Length = 238 Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 43/187 (22%), Positives = 67/187 (35%), Gaps = 18/187 (9%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P + Y D + H L P++W S T Q E Sbjct: 56 NNYPEAWQKRYVKQQYVVVDPTVQHCMLSLQPLVWSSQSANT----QSQKDFWEEARSYG 111 Query: 115 FA-GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR- 172 G A R G + L+ + + Y + K + A Sbjct: 112 LNVGWAQSSRDFIGTRGMLTLARSTDQLSEKEQKAQYTNMYWLSQTVHSSIAKIVNDAEF 171 Query: 173 -----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+ +G TS EIA+ LG++ TVN +L ++ KL+ N+I A + Sbjct: 172 AQFNLYLTNREKEVLRWTAEGKTSAEIAQILGVTERTVNFHLCNSMQKLNVNNKISAAIR 231 Query: 228 AIRFGYI 234 A+ G + Sbjct: 232 AVMLGIL 238 >gi|330820206|ref|YP_004349068.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli BSR3] gi|327372201|gb|AEA63556.1| quorum sensing LuxR family sensor regulator [Burkholderia gladioli BSR3] Length = 240 Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 49/232 (21%), Positives = 82/232 (35%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +++ Q+L ++ R+ F + P Q ++ Y Sbjct: 15 AAANEQQLFQQISAYSKRL---GFEYCCYGIRVPQPGTQPVVEIFDTYPAGWMAHYQARN 71 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + IIW + T + S R G + G+A Sbjct: 72 YIEVDPTVRDGAMSPNMIIWPDVD--TAEDPSLWRDARDFGMSV---GVAQSAWAARGVF 126 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + ++ FL + K +A+ LT+RE L Sbjct: 127 GLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGKFL-VPKLSPAASVTLTKREREVL 185 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI E+L +S TV ++ + KL A N++QA+ KAI G I Sbjct: 186 SWTSEGRTASEIGEQLNISERTVTFHINNILAKLGATNKVQAVVKAIGMGLI 237 >gi|78061902|ref|YP_371810.1| LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77969787|gb|ABB11166.1| transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 239 Score = 125 bits (313), Expect = 6e-27, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 74/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMAHYQAQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + G+A Sbjct: 71 YIEIDSTVRDGALSTNMIVWPDVDRIEPCP-----LWQDARDYGLSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K +A LT RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFV-VPKLAPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|161520519|ref|YP_001583946.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353291|ref|YP_001948918.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221209754|ref|ZP_03582735.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia multivorans CGD1] gi|160344569|gb|ABX17654.1| transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189337313|dbj|BAG46382.1| LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|221170442|gb|EEE02908.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia multivorans CGD1] Length = 239 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 73/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + R G+A Sbjct: 71 YIEIDSTVRDGALSTNMIVWPDVDKIEPCP-----LWRDARDFGLSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K A LT RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-VPKLSPEARVALTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|12620907|gb|AAG61133.1|AF330022_1 AHL receptor [Burkholderia vietnamiensis] Length = 239 Score = 125 bits (313), Expect = 7e-27, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 73/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQARN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + G+A Sbjct: 71 YIEIDSTVREGALSTNMIVWPDVDRIDPCP-----LWEDARDFGLAVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + + L I + +++ F+ L K +A LT RE L Sbjct: 126 GLLSISRHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-LPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|293611186|ref|ZP_06693484.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826437|gb|EFF84804.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 238 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 77/209 (36%), Gaps = 9/209 (4%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F + L+NY D + H L P++W S Sbjct: 33 GFDYCAYGMQSPLSIAEPKTIMLNNYPEAWQKRYLEQHYVKIDPTVQHCMVSLQPLVWSS 92 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 +T E R G + +A + R G + L+ + + Sbjct: 93 QSAKTQEEKDFWEEARSYGLNVGWAQSS---RDFIGTRGMLTLARSSDQLSEKEQKAQYT 149 Query: 152 ACYQV----ITDFLELFKKRSSAARNL--TERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 Y + + ++ + A NL T RE L+ +G TS EIA+ LG++ TV Sbjct: 150 NMYWLSQTVHSSIAKVVNEMEFAQFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTV 209 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 N +LG++ KL+ N+I A +A+ G + Sbjct: 210 NFHLGNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|150397799|ref|YP_001328266.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150029314|gb|ABR61431.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 247 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 59/216 (27%), Positives = 91/216 (42%), Gaps = 3/216 (1%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLI--CELHNYDLDSGDIPNILIETYGDDFLF 78 LHL++ I FA + + + L Q+ L N+ + + + Sbjct: 33 LHLMRRLISRYGFA-HFMIARLPMADEQRFSERLMLSNWPAELVQQYDASETFQASLLIE 91 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 LPI E + +G+ L A A + + + V+ + + Sbjct: 92 RLRQTKLPIAGGPELMEPARKGAGKAPAILLPPHADMAHFAVLLHTTYGEPFVVVLSGKR 151 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 A + A Q+ F S A L+ RE CL+ A G +S+EIA L Sbjct: 152 DEPAGGERATLYLALVQLFECLERTFDAGSGAREKLSSREIECLRWAAAGKSSDEIAIIL 211 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+S +TV++Y SAT KLDAVNR+QAIA+A+R I Sbjct: 212 GISAYTVSSYFKSATRKLDAVNRMQAIARAMRMKLI 247 >gi|126640216|ref|YP_001083200.1| eR transcriptional regulator [Acinetobacter baumannii ATCC 17978] Length = 198 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 67/187 (35%), Gaps = 18/187 (9%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P + Y D + H L P++W S +T + E Sbjct: 16 NNYPEAWQKRYVERQYVKIDPTVQHCMVSLQPLVWSSQSAKT----QAEKDFWEEARSYG 71 Query: 115 FA-GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR- 172 G A R G + L+ + + Y + K + Sbjct: 72 LNVGWAQSSRDFIGTRGMLTLARSNDQLSEKEQKAQYTNMYWLTQTVHSSIAKIVNDVEF 131 Query: 173 -----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+ +G TS EIA+ LG++ TVN +L ++ KL+ N+I A + Sbjct: 132 AKFNLYLTNREKEALRWTAEGKTSAEIAQILGVTERTVNFHLSNSMQKLNVNNKISAAIR 191 Query: 228 AIRFGYI 234 A+ G + Sbjct: 192 AVMLGLL 198 >gi|126724411|ref|ZP_01740254.1| transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] gi|126705575|gb|EBA04665.1| transcriptional regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] Length = 238 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 73/184 (39%), Gaps = 16/184 (8%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 L + P+ Y D + + P+ W + ES + R Sbjct: 50 LGYANYPDEWKMHYMRMNLHRVDPTIHQSARSIAPVDWTRLSRG---ESFNSVFYRANDF 106 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFT-----SEFLMLANEVIIEAHGACYQVITDFLELFK- 165 L G+ PVR F G + T E+ +L + I E A + ++ Sbjct: 107 GLTDQGLTVPVRGPFGDVGLLSVTRSCSEREWKLLTRDKISELQMAAVHLHDSVMQSDVL 166 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ +L+ RET LQ G T ++I + L +S TV ++ SA KL A+ IQA+ Sbjct: 167 SRALRRPSLSARETEVLQWTAIGKTQQDIGDILSISHRTVEVHMRSAREKLGALTTIQAV 226 Query: 226 AKAI 229 +AI Sbjct: 227 GRAI 230 >gi|182677912|ref|YP_001832058.1| LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182633795|gb|ACB94569.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 268 Score = 124 bits (312), Expect = 8e-27, Method: Composition-based stats. Identities = 51/196 (26%), Positives = 76/196 (38%), Gaps = 26/196 (13%) Query: 58 DLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 G IE Y D + LLPI W + + + Sbjct: 79 PYILGTYSQEWIEHYRERNYVNLDPVINVGARSLLPIDWAKLPRSSPKIQKF-FGEATDF 137 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 G + G+ PVR + + F M ++ E Y++I D + + Sbjct: 138 G-VGRQGLTIPVRGPTNG-----LWALFCMTTDDTQAEWQARHYELIRDMVHVAHFIQQR 191 Query: 171 A------------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 A +T+RE L + +G T E+I+ + +S TV A+L SA KL A Sbjct: 192 AFEMHHQDEGIDINTITKREIEALSWSAEGKTLEDISVLMRISQETVKAHLDSARYKLGA 251 Query: 219 VNRIQAIAKAIRFGYI 234 +NRI A+AKAIR G I Sbjct: 252 LNRIHAVAKAIRAGLI 267 >gi|12620903|gb|AAG61131.1|AF330020_1 AHL receptor [Burkholderia cepacia] Length = 239 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 74/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMAHYQARN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + G+A Sbjct: 71 YIEIDSTVRDGALSTNMIVWPDVDRIDPCP-----LWQDARDFGLSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K +A LT RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-VPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|14627170|gb|AAK50054.2|AF364058_1 transcriptional activator [Burkholderia multivorans ATCC 17616] Length = 239 Score = 124 bits (312), Expect = 9e-27, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 72/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + R G+A Sbjct: 71 YIEIDSTVRDGALSTNMIVWPDVDKIEPCP-----LWRDARDFGLSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K LT RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-VPKLSPETRVALTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILCISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|307824873|ref|ZP_07655096.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] gi|307734231|gb|EFO05085.1| transcriptional regulator, LuxR family [Methylobacter tundripaludum SV96] Length = 236 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 68/232 (29%), Gaps = 14/232 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + +L + + F + P +NY Sbjct: 13 QSIQCAHQLFQTILSFSKEL---GFDHCAYGLRMPLPLTNPKTLMFNNYPTAWQAQYQAK 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + H LLPIIW + G A R Sbjct: 70 NYLAIDPTVQHAMRSLLPIIWTDDLFSPASD-----LWEEACSFGLRVGWAQSSRDFNGF 124 Query: 129 NGYVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + +E + AN+ + + K L+ RE L Sbjct: 125 VGMLTLARSNEPITEIELDANKFKMAWLTQVAHLGMSRCLTPKLMQEVNVTLSNREIEVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + DG TS EI+ L ++ TVN ++ + KL+A N+ A KA G + Sbjct: 185 RWTADGKTSSEISCILNIAERTVNFHINNVVTKLNAANKTSATIKAAMLGLL 236 >gi|149913176|ref|ZP_01901710.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. AzwK-3b] gi|149813582|gb|EDM73408.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. AzwK-3b] Length = 242 Score = 124 bits (311), Expect = 1e-26, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 88/238 (36%), Gaps = 29/238 (12%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +S + +L + +++ I + + ++S + G P ++ Sbjct: 19 ASDIDDLQRLIERLRDEIGVDHVVYHWVSSGGEQ--------------YGCGTYPAAWVQ 64 Query: 71 TY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 Y D + P+ W+ + + ++ + G + P+R Sbjct: 65 LYVAKDYLRIDPVVQGCYQTFHPVDWKRLDWSSR--AARAFLSDAVAHGIGNQGYSVPLR 122 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF------LELFKKRSSAARNLTER 177 + + A + + H +I + L + A+ L+ R Sbjct: 123 GPNGQFALFSVSHHCTDEAWAMFTDTHRRTLILIAHYFNHKALLLEPGRCPLTAQPLSPR 182 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E + L GY+ ++AE L +S HT+ Y+ SA +KL A+N + A+++AI G I Sbjct: 183 EVDVITLLAMGYSRAQVAETLMISEHTLRTYVESARLKLGAINTLHAVSRAITRGLIV 240 >gi|198283772|ref|YP_002220093.1| LuxR family transcriptional regulator [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665417|ref|YP_002426403.1| autoinducer-binding transcriptional regulator, LuxR family [Acidithiobacillus ferrooxidans ATCC 23270] gi|71044540|gb|AAV53702.2| AfeR [Acidithiobacillus ferrooxidans] gi|198248293|gb|ACH83886.1| transcriptional regulator, LuxR family [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517630|gb|ACK78216.1| autoinducer-binding transcriptional regulator, LuxR family [Acidithiobacillus ferrooxidans ATCC 23270] Length = 237 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 65/212 (30%), Gaps = 17/212 (8%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 F + P + NY D + H P++W Sbjct: 34 FDYCAYGLRMPLPLVRPKTVLFSNYPAVWQARYQAQEYQAIDPTVRHAMRSPSPVVWSDD 93 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA 152 + AG+A R G + + E Sbjct: 94 LFAP-----ARELWEEARSFGLRAGLAHTCRDAGGMGGMLTLARAGETVTTA---EWQAK 145 Query: 153 CYQVITDFLELF---------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 ++ + K + A L+ RE L+ G+G TS EIA L ++ Sbjct: 146 ACHILWLVQAVHLSMIRVIAPKLQPEIAVQLSCREVEVLRWTGEGKTSGEIANILNITER 205 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 TVN ++ A KL+AVN+ A+ +A G + Sbjct: 206 TVNFHISKAMAKLNAVNKTAAVLQAAMLGLLS 237 >gi|146338047|ref|YP_001203095.1| putative N-acyl homoserine lactone transcriptional regulator, LuxR-like [Bradyrhizobium sp. ORS278] gi|146190853|emb|CAL74858.1| putative N-acyl homoserine lactone transcriptional regulator, LuxR-like [Bradyrhizobium sp. ORS278] Length = 242 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 58/183 (31%), Gaps = 9/183 (4%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + P E Y D H S L P W + + + + Sbjct: 60 ANGWPREWFEMYAREQFHRCDPIPRHCVSTLNPFAWSEVPYDREDDPGAHEVMMRARDFR 119 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAAR 172 G P+ G V E LA + H + L + + + R Sbjct: 120 LNEGFCVPIHYDDAV-GAVSIAGEHPNLAPDARGALHLISIFTHSRLRALARATAGNPGR 178 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ E L A G T+ E A LG+S V +L A KL N+ +A A+ G Sbjct: 179 RLSRIEAEVLSWAARGKTAWETARILGVSERNVRWHLEEAQRKLATKNKTATVATALVNG 238 Query: 233 YIC 235 I Sbjct: 239 EIS 241 >gi|121663600|emb|CAM12358.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae] Length = 239 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 84/232 (36%), Gaps = 18/232 (7%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + Q+L ++ R+ F + P Q L+ Y Sbjct: 15 AENEQQLFHQVSAYSKRL---GFEYCCYGIRVPQPGSQPLVEIFDTYPPGWMAHYQARNY 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKN 129 D + + IIW +++ Q S+ + + G+A Sbjct: 72 IEIDPTVRDGAASPNMIIW------PDADAAEQPSLWRDARDFGMSVGVAQSSWAARGVF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + ++ FL + K +A+ +LT+RE L Sbjct: 126 GLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFL-VPKLSPAASISLTKREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI E+L +S TV ++ + KL A N++QA+ KAI G I Sbjct: 185 SWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVKAIGMGLI 236 >gi|254465085|ref|ZP_05078496.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium Y4I] gi|206685993|gb|EDZ46475.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium Y4I] Length = 251 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 73/191 (38%), Gaps = 15/191 (7%) Query: 58 DLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 G Y D + P+ W+ + + + + Sbjct: 62 HYYFGTYSEAWTGRYLDKAYSRVDPVVVGCYQRFHPVDWKRLDWNP--KPAREFLKDAME 119 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-----LELFK 165 + G A P+R + + A E ++ + + ++ + LEL Sbjct: 120 HGVGNQGYAIPIRGPNGQFALFTLSHNCGDAAWEKLVAKYNRDFILVAHYFNRKVLELEP 179 Query: 166 KRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R++ A+ L+ RE L L GY+ ++A+ L +S HT+ Y+ SA KL A+N A Sbjct: 180 SRTAEHAQPLSPREVDALTLLAIGYSRAQVAQTLAISEHTLRVYIESARFKLGAINTTHA 239 Query: 225 IAKAIRFGYIC 235 IA+A+ G I Sbjct: 240 IARAVSLGLIV 250 >gi|218516149|ref|ZP_03512989.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 122 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 41/119 (34%), Positives = 55/119 (46%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 AG+A P + F E L + E + + + + SA L+ Sbjct: 3 AGVAMPTIAVDGRRLVFWFCGERAALGQSEVNELAIIILHALDAYNIVRRNEESAHNALS 62 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++ G TS EI + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 63 ARELEVVRWTAQGKTSIEIGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 121 >gi|206563716|ref|YP_002234479.1| N-acylhomoserine lactone dependent regulatory protein CepR [Burkholderia cenocepacia J2315] gi|198039756|emb|CAR55726.1| N-acylhomoserine lactone dependent regulatory protein CepR [Burkholderia cenocepacia J2315] Length = 239 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 73/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + G+A Sbjct: 71 YIEIDSTVRDGALNTNMIVWPDVDRIDPCP-----LWQDARDFGLSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K +A LT RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-VPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|238024809|ref|YP_002909041.1| AHL receptor [Burkholderia glumae BGR1] gi|55509000|gb|AAV52804.1| AHL receptor [Burkholderia glumae BGR1] gi|237879474|gb|ACR31806.1| AHL receptor [Burkholderia glumae BGR1] Length = 239 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 84/232 (36%), Gaps = 18/232 (7%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + Q+L ++ R+ F + P Q L+ Y Sbjct: 15 AENEQQLFHQVSAYSKRL---GFEYCCYGIRVPQPGSQPLVEIFDTYPPGWMAHYQARNY 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKN 129 D + + IIW +++ Q S+ + + G+A Sbjct: 72 IEIDPTVRDGAASPNMIIW------PDADAAEQPSLWRDARDFGMSVGVAQSSWAARGVF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + ++ FL + K +A+ +LT+RE L Sbjct: 126 GLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFL-VPKLSPAASISLTKREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI E+L +S TV ++ + KL A N++QA+ KAI G I Sbjct: 185 SWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVKAIGMGLI 236 >gi|312963163|ref|ZP_07777648.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311282674|gb|EFQ61270.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 240 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 66/195 (33%), Gaps = 11/195 (5%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F + + Q++I E NY + + D + H +LP +W+ Sbjct: 33 GFQFCSFKMSTQQLANQKIIFEKSNYPNEWSHLYKQAKFADVDPVVAHCQRSVLPFVWKE 92 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG 151 + L G P+ + + ++ E + E G Sbjct: 93 TAFQGTPH-----LWTLAQSCGVHLGWTQPLHGPRGVFSMLTLSRSKREISPEELYEKAG 147 Query: 152 ----ACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 C+ + T + A NLT RE L+ + G T+ EIA+ L LS TV Sbjct: 148 NALWLCHAMHTVVAHKYANEPDAVPCNNLTPRELEVLRWSALGKTAGEIAKILCLSERTV 207 Query: 206 NAYLGSATVKLDAVN 220 + S+ KL N Sbjct: 208 GFHNCSSMRKLGVNN 222 >gi|171322367|ref|ZP_02911189.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171092309|gb|EDT37680.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 239 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 74/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMARYQAQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + G+A Sbjct: 71 YIEIDSTVRDGALSTNMIVWPDVDRIDPCP-----LWQDARDFGLSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K ++ LT RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-VPKLSPESSVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIAAGLI 236 >gi|12620905|gb|AAG61132.1|AF330021_1 AHL receptor [Burkholderia stabilis] Length = 239 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 46/232 (19%), Positives = 76/232 (32%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPSVAIFDTYPDGWMARYQAQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + E GL G+A Sbjct: 71 YIEIDSTVRDGALSTNMIVWPDVDRS---DPGPLWQDAREFGLSV--GVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K +A LT RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-VPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISGRTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|126740492|ref|ZP_01756179.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. SK209-2-6] gi|126718293|gb|EBA15008.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. SK209-2-6] Length = 239 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 67/190 (35%), Gaps = 15/190 (7%) Query: 59 LDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 G I+ Y D + P+ W+ + T + + + Sbjct: 51 YGCGTYKQAWIQRYLDKGYVRSDPVIAGCYQRFHPVDWRRLDWTTR--QAKEFRSDAQNY 108 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------K 165 + G + P+R + + + I+ ++ + K Sbjct: 109 GVGNQGYSVPIRGPNGQFALFTVSHSCNDANWDEFIDTFSQELILVGHYFNRKALEFEPK 168 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ L+ RE L L GY ++A+ L +S HT+ Y+ SA KL A+N AI Sbjct: 169 RKPEHTPPLSPREMDALTLLAIGYNRAQVAKTLSISEHTLRVYIESARFKLGALNTTHAI 228 Query: 226 AKAIRFGYIC 235 A+AI G I Sbjct: 229 ARAISCGLIV 238 >gi|167572684|ref|ZP_02365558.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 239 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 79/239 (33%), Gaps = 16/239 (6%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + + Q+L ++ R+ F + P + + Y Sbjct: 7 DAYLQFSAAENEQQLFRQIAAYSKRL---GFEYCCYGIRVPLPISKPAVAIFDTYPNGWM 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + D + I+W S G G+A Sbjct: 64 ERYQEMNYLEVDPTVRDGALSTNMIVWPEASR-----SDGTTLWNDARDHGLAVGVAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLT 175 G + L + I + +++ FL + K + LT Sbjct: 119 WAPRGVFGLLTIARHTDRLTSAEINQLTLQANWLANMSHSLMSRFL-VPKLAPESGVALT 177 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 178 HREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|14586760|gb|AAK70352.1|AF333007_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia vietnamiensis] Length = 239 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 73/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + G+A Sbjct: 71 YIEIDSTVRDGALNTNMIVWPDVDRIDPCP-----LWQDARDFGLSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K +A LT RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-VPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|229588916|ref|YP_002871035.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229360782|emb|CAY47640.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 235 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 80/187 (42%), Gaps = 18/187 (9%) Query: 63 DIPNILIETYGD-------DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 P+ ++ Y D + H P+ W + + + + G Sbjct: 52 TYPSDWLKRYKDENFIQVDPIIRHCRHHFAPLFWGRARLKARGCT--NRFWKEREGYGLL 109 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR----S 168 G++ P+R F++ + ++ + +E+ + +G + +I LE +K Sbjct: 110 RGVSIPLR--FNEMAGSLNVAQCVSDTDELADDLNGPLGMLFMLIPFLLEGSQKHLKTVG 167 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE+ L+ G G T+ E++ LG S T+N ++ +A+ KL + +R QA+ A Sbjct: 168 EPPSSLTLRESEVLKWTGVGKTTWEMSCILGCSERTINFHIANASRKLGSFSRRQAVGVA 227 Query: 229 IRFGYIC 235 + G I Sbjct: 228 LAQGLIS 234 >gi|148258315|ref|YP_001242900.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146410488|gb|ABQ38994.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 242 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 59/183 (32%), Gaps = 9/183 (4%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + P+ + Y D H S L P W + E + Sbjct: 60 ANGWPSEWFDLYAREQFHRYDPIPRHCLSTLNPFAWSEAPYDRNDEPGAHEVMTRARDFR 119 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-AR 172 G P+ G V E LA + H + L + S +R Sbjct: 120 LNEGFCVPIHYDDAV-GAVSLAGERPNLAPDARGALHLISIFTHSRLRALARATSGGQSR 178 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ E L A G T+ E A LG+S V +L A KL+ N+ +A A+ G Sbjct: 179 RLSRIEAEVLSWAARGKTAWETARILGVSERNVRWHLEEAQRKLETKNKTATVATALVNG 238 Query: 233 YIC 235 I Sbjct: 239 EIT 241 >gi|120612451|ref|YP_972129.1| LuxR family transcriptional regulator [Acidovorax citrulli AAC00-1] gi|120590915|gb|ABM34355.1| transcriptional regulator, LuxR family [Acidovorax citrulli AAC00-1] gi|227167429|gb|ACP19743.1| LuxR-like protein [Acidovorax citrulli] Length = 242 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 20/195 (10%) Query: 55 HNYDLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107 + S + P+ + Y D H + P W+ + + E+ + Sbjct: 52 PPIGVLSHNYPSRWVSHYIARNYYLEDPVRRHAPQAMSPYRWKDVSAQGDREAH---IMD 108 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 G+ P+ + ++ + L + +A Y ++T F L+ R Sbjct: 109 EATDAGLADGLGLPIHEPGGRI-FLATVASHQQLT--LGNDACVRTYALVTAFHALYTMR 165 Query: 168 S-------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 A LT RE CL G +S EI + +S HTVN +L +A K D + Sbjct: 166 FATEQTQIPTAVKLTSREAECLTWVAYGKSSWEIGRIMRISEHTVNFHLKNAMAKFDTAS 225 Query: 221 RIQAIAKAIRFGYIC 235 R+ A +A G I Sbjct: 226 RVTAAVRAANLGLIS 240 >gi|85707086|ref|ZP_01038174.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. 217] gi|85668372|gb|EAQ23245.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. 217] Length = 224 Score = 123 bits (309), Expect = 2e-26, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 82/224 (36%), Gaps = 23/224 (10%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 L +++R + + A +N E I D L Sbjct: 11 LDDLRDRFELDHVAYAGMNPISGASHGHMTYGEDWTAHYLQNKYYEI------DPTLLKA 64 Query: 81 NSGLLPIIWQSIQE----ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--- 133 + P+ W ++ +T+ + + G+ P+ + G + Sbjct: 65 RHSIAPVDWHRLERGAEFQTIFRDARDFGISDR-------GLTIPIHGPYGDVGGLSINR 117 Query: 134 --FTSEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYT 190 E+ +L +E+I + A + ++ R + +L+ RE LQ G + Sbjct: 118 DCSDREWHLLISEIIGDLQSAAVHMHDMVIQADPLTRMLNSPSLSTREIEILQWTAAGKS 177 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++I + L +S TV +L SA KL+A+ QAI +AI G I Sbjct: 178 QQDIGDILSISHRTVEVHLRSARQKLNALTTPQAIGRAINLGLI 221 >gi|299771984|ref|YP_003734010.1| Transcriptional activator protein phzR [Acinetobacter sp. DR1] gi|284158686|gb|ADB80058.1| AqsR [Acinetobacter sp. DR1] gi|298702072|gb|ADI92637.1| Transcriptional activator protein [Acinetobacter sp. DR1] Length = 238 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 65/187 (34%), Gaps = 18/187 (9%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P + Y D + H L P++W S T Q E Sbjct: 56 NNYPEAWQKRYVKQQYVRVDPTVQHCMLSLQPLVWSSQSANT----QSQKDFWEEARSYG 111 Query: 115 FA-GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR- 172 G A R G + L + + + + K + Sbjct: 112 LNVGWAQSSRDFIGTRGMLTLARSTDQLLEKEQKAQYTNMFWLSQTVHSSIAKIVNETEF 171 Query: 173 -----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+ +G TS EIA+ LG++ TVN +L ++ KL+ N+I A + Sbjct: 172 AQFNLYLTNREKEVLRWTAEGKTSAEIAQILGVTERTVNFHLCNSMQKLNVNNKISAAIR 231 Query: 228 AIRFGYI 234 A+ G + Sbjct: 232 AVMLGIL 238 >gi|26417542|gb|AAM75413.1| transcriptional regulator PpuR [Pseudomonas putida] Length = 238 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 74/231 (32%), Gaps = 24/231 (10%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-- 73 + L ++ ++ NF L + A +Q LI D P+ Y Sbjct: 20 DWLAHLKILTRKLGYSNF-LIGLKPAPTDANQQVLI---------YSDYPDAWRTRYDAE 69 Query: 74 -----DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + H + P++W + S G+A P+ + Sbjct: 70 SYAAVDPVVQHCLNANRPLLW---DRDNYRRPSESEFFEEAAAHGLQQGLALPLHGPRGE 126 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQL 184 G + + ++ D+ + S +LT RE LQ Sbjct: 127 AGMLCLKPSESGPRATATMIESLPMATLLRDYAMEGMLKARIECSTPVHLTSREKEVLQW 186 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + G T+ EI+ L + ++ + + K +R A+ KAI+ I Sbjct: 187 SAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQKSIT 237 >gi|254438192|ref|ZP_05051686.1| Autoinducer binding domain protein [Octadecabacter antarcticus 307] gi|198253638|gb|EDY77952.1| Autoinducer binding domain protein [Octadecabacter antarcticus 307] Length = 256 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 72/190 (37%), Gaps = 15/190 (7%) Query: 59 LDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 G P ++ Y D + P+ W+++ + +++ Sbjct: 49 YGCGTYPLSWVQHYVQKDYLRIDPVIIGCFKQFHPVDWKALDWSS--KAAVAFRAEAMQA 106 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFT-----SEFLMLANEVIIEAHGACYQVITDFLELFKK 166 + G + P+R + + +++ + + LE+ K Sbjct: 107 GVGNQGYSIPIRGPSGQFALFSLSNNTDDTDWAAFTESNRRDLILCAHSFNQKALEVETK 166 Query: 167 R-SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R + L+ RE L GY+ ++A+ L +S HT+ AY+ SA KL A N + A+ Sbjct: 167 RMPDPVKPLSGREIDVLTYLAMGYSRSQVAQTLTISEHTLRAYVESARFKLGASNTMHAV 226 Query: 226 AKAIRFGYIC 235 A+A+ G I Sbjct: 227 ARAVSEGLIV 236 >gi|83716915|ref|YP_439706.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|167578146|ref|ZP_02371020.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167616276|ref|ZP_02384911.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257142845|ref|ZP_05591107.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650740|gb|ABC34804.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 239 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 87/239 (36%), Gaps = 16/239 (6%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + + Q+L ++ R+ F + P + ++ Y Sbjct: 7 DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISKPVVAIFDTYPNGWM 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + D + I+W E + +++ S + GL G+A Sbjct: 64 ERYQEMNYLEVDPTVRDGALSSNMIVW---PEASANDATTLWSDARDHGLAV--GVAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLT 175 G + L + I + +++ FL + K + LT Sbjct: 119 WASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFL-VPKLAPESGVALT 177 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 178 HREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|71057001|emb|CAI51628.1| eR transcriptional regulator [Acidithiobacillus ferrooxidans] Length = 214 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 65/212 (30%), Gaps = 17/212 (8%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 F + P + NY D + H P++W Sbjct: 11 FDYCAYGLRMPLPLVRPKTVLFSNYPAVWQARYQAQEYQAIDPTVRHAMRSPSPVVWSDD 70 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA 152 + AG+A R G + + E Sbjct: 71 LFAP-----ARELWEEARSFGLRAGLAHTCRDAGGMGGMLTLARAGETVTTA---EWQAK 122 Query: 153 CYQVITDFLELF---------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 ++ + K + A L+ RE L+ G+G TS EIA L ++ Sbjct: 123 ACHILWLVQAVHLSMIRVIAPKLQPEIAVQLSCREVEVLRWTGEGKTSGEIANILNITER 182 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 TVN ++ A KL+AVN+ A+ +A G + Sbjct: 183 TVNFHISKAMAKLNAVNKTAAVLQAAMLGLLS 214 >gi|172063602|ref|YP_001811253.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171996119|gb|ACB67037.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 239 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 74/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMARYQAQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + G+A Sbjct: 71 YIEIDSTVRDGALSTNMIVWPDVDRIDPCP-----LWQDARDYGLSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K ++ LT RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-VPKLSPESSVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236 >gi|167565578|ref|ZP_02358494.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] Length = 239 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 85/239 (35%), Gaps = 16/239 (6%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + + Q+L ++ R+ F + P + + Y Sbjct: 7 DAYLQFSAAENEQQLFRQIAAYSKRL---GFEYCCYGIRVPLPISKPAVAIFDTYPNGWM 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + D + I+W E + + + + + GL G+A Sbjct: 64 ERYQEMNYLEVDPTVRDGALSTNMIVW---PEASRSDETTLWNDARDHGLAV--GVAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLT 175 G + L + I + +++ FL + K + LT Sbjct: 119 WAPRGVFGLLTIARHTDRLTSAEINQLTLQANWLANMSHSLMSRFL-VPKLAPESGVALT 177 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 178 HREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|170700319|ref|ZP_02891331.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170134753|gb|EDT03069.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 239 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 74/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFNTYPDGWMARYQAQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W I + G+A Sbjct: 71 YIEIDSTVRDGALSTNMIVWPDIDRIDPCP-----LWQDARDYGLSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K ++ LT RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-VPKLSPESSVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAIGAGLI 236 >gi|260551305|ref|ZP_05825506.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624] gi|260405619|gb|EEW99110.1| transcriptional activator protein phzR [Acinetobacter sp. RUH2624] Length = 238 Score = 122 bits (307), Expect = 3e-26, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 79/230 (34%), Gaps = 12/230 (5%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + EL + +++ F + L+NY Sbjct: 15 VKNEDELFEVVKSTASKL---GFDYCAYGMQSPLSIAEPKTIMLNNYPQAWQKRYIEQRY 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + H L P++W S +T E R G + +A + R G Sbjct: 72 VKVDPTVQHCMVSLQPLVWSSQNAKTQEEKDFWEEARSYGLNVGWAQSS---RDFIGTRG 128 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSCLQL 184 + L+ + + Y + K + LT RE L+ Sbjct: 129 MLTLARSTDQLSEKEQKAQYTNMYWLTQTLHSSIAKIVNDVEFSQFNLYLTNREKEALRW 188 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EIA+ +G++ TVN +L ++ KL+ N+I A +A+ G + Sbjct: 189 TAEGKTSAEIAQIIGVTERTVNFHLCNSMQKLNVNNKISAAIRAVMLGLL 238 >gi|222149400|ref|YP_002550357.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736383|gb|ACM37346.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 241 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 67/162 (41%), Gaps = 2/162 (1%) Query: 75 DFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVR-LEGGLLPFAGIAFPVRLGFHKNGYV 132 + F +LP W +E + ++R L G+ F + ++ Sbjct: 79 PVVKKFAGSILPRTWDMKFREPNDMAEEWPPAMRDLMMRFKLIVGVVFIFPSLDSRLYFM 138 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 F + L+ + E V + L + L+ RE L+ G TS Sbjct: 139 RFDGDRSPLSQCEVNELGMLAMAVFDTYDRLRRTELMNVDVLSVRELEVLRWTAQGKTSV 198 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI + L LS HT+NAY+ +A KLD VNR Q +AKAIR I Sbjct: 199 EIGQILSLSDHTINAYMTTAMKKLDCVNRTQLVAKAIRLKLI 240 >gi|163738954|ref|ZP_02146367.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter gallaeciensis BS107] gi|163741802|ref|ZP_02149192.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter gallaeciensis 2.10] gi|161384975|gb|EDQ09354.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter gallaeciensis 2.10] gi|161387759|gb|EDQ12115.1| autoinducer-binding transcriptional regulator LuxR [Phaeobacter gallaeciensis BS107] Length = 239 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 69/190 (36%), Gaps = 15/190 (7%) Query: 58 DLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 G +E Y D + P+ W+ + + + + + Sbjct: 50 HYHFGTYSQGWVERYQEKAYVRVDPVIIGCYQRFHPVDWRRLDWSS--KPAREFLQDALA 107 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-----LELFK 165 + G + P+R + + + H +I + LE Sbjct: 108 HDVGNQGYSIPIRGPNGQFALFTVSHNCDDDTWTRFTDKHSRDLILIGHYFNRKALEFEP 167 Query: 166 KRSSAA-RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 RS + L+ RE L L GY+ ++A+ L +S HT+ Y+ SA KL A+N A Sbjct: 168 DRSPEHVQPLSPREIDALTLLAMGYSRAQVAKTLTISEHTLRVYIESARFKLGAINTTHA 227 Query: 225 IAKAIRFGYI 234 IA+A+ G I Sbjct: 228 IARALSLGLI 237 >gi|217979469|ref|YP_002363616.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217504845|gb|ACK52254.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 238 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 9/169 (5%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN-GYV 132 D + + +LP+ W ++++++ E+ +G L G+ PVR + G Sbjct: 72 DPMVRAMSRTVLPMDWAALRQKSAHETGIHFLPGEDGAL--RQGLTIPVRGPSNSVWGLF 129 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTERETSCLQLAG 186 I TS + I ++ + + +T RE L L Sbjct: 130 IATSNESEICWASRRHELMIDLAHIAHYVHKRACDIHGEGHTIDLSTITRREIEALALVA 189 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G EIA + +S TV A+L SA KL A+NR+ A AKA+R G I Sbjct: 190 QGKKPGEIAMLMRISNDTVKAHLDSARDKLQALNRVHAAAKALRAGLIS 238 >gi|222087763|ref|YP_002546300.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725211|gb|ACM28367.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 246 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 16/192 (8%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSG---QLSVRL 108 + +G P+ TY D + + P W+ + + + Sbjct: 54 MLAGRWPDKWPLTYVARKYVLVDPTMRYLGQAQRPFRWRDAMAALKGDPLRRRMEQMMAD 113 Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---- 164 G FP+ G + + L+ + +V LEL Sbjct: 114 ARANGLVDGYIFPIFGRSGLLGTMTIGGNSVDLSPAELSLFDAVAKKVFWRLLELRDEAR 173 Query: 165 --KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++ + LT RE L +G TS +I+ L +S HTV+ Y+ S KL+A NR Sbjct: 174 PLEEAPAIEAKLTRREIEVLNHLAEGMTSMDISRTLKISNHTVDWYMNSIQDKLNARNRQ 233 Query: 223 QAIAKAIRFGYI 234 +A A R G + Sbjct: 234 HIVAIAFRNGLV 245 >gi|289625636|ref|ZP_06458590.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646651|ref|ZP_06477994.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298488410|ref|ZP_07006441.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157035|gb|EFH98124.1| Transcriptional regulator ahyR/asaR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|330868197|gb|EGH02906.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 254 Score = 122 bits (306), Expect = 4e-26, Method: Composition-based stats. Identities = 46/176 (26%), Positives = 72/176 (40%), Gaps = 13/176 (7%) Query: 72 YGDDFLFHFN-SGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 Y D + H + + P +W + T I + VR G+ P+ + Sbjct: 77 YQIDPVQHLAVASVSPFVWSYQPKAETVLQTFITDMHKPVVRYLHDSHMTCGVTVPIHMP 136 Query: 126 FHKN----GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERE 178 G +S+ + + G Q + K RS A LT RE Sbjct: 137 KGGFATLTGLCSDSSDAALEDARQSLAEFGLLAQAFQEVAYPLFDQKMRSCNAIKLTRRE 196 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL + +G T+ EIA++L SV TV +L SA KL A NR+QA+ +A+ + + Sbjct: 197 RECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|218663810|ref|ZP_03519740.1| hypothetical protein RetlI_33506 [Rhizobium etli IE4771] Length = 253 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 33/217 (15%), Positives = 56/217 (25%), Gaps = 17/217 (7%) Query: 35 LYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF-------------- 80 L D P + ++ Y D++ Sbjct: 35 LAAFALNFDIPWVAYGPLAADRWAFKRVKYDPQVVLNYPDEWQKRCSEMAYDRVGPVVKE 94 Query: 81 -NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-EF 138 W + + + +GI P+ F Sbjct: 95 SRKQRRAFQWSEVYNDVYTTEGERRIFDEAAAFGLRSGITVPLHGPDGSFAITSFAQHSS 154 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTSEEIAEK 197 N I A + + L+ RE C+ G +S +I Sbjct: 155 GQFQNRAISYLQLAALHFHSRVGKFADSNCIDEGAVLSGRERECIAWVARGKSSSDIGTI 214 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LG+S +TV+ ++ + KLD +R A A G I Sbjct: 215 LGISKNTVDFHIKNVMRKLDTASRTVAAITAATLGII 251 >gi|307943595|ref|ZP_07658939.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] gi|307773225|gb|EFO32442.1| LuxR family transcriptional regulator [Roseibium sp. TrichSKD4] Length = 232 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 42/117 (35%), Positives = 58/117 (49%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTER 177 + P +G + F L+ +I H A + F L + ++ +LT R Sbjct: 115 VFVPTFDRCGLSGLIAFIGIPSDLSGVIINLLHLAGLYTSSRFAALLFEEATNPTDLTPR 174 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E CL+ + +G TS EIAEKLG+S HT + YL AT KL A NR A+ A R G I Sbjct: 175 EVECLKWSSNGLTSSEIAEKLGISRHTADWYLKEATQKLGAQNRTHAVMIAYRKGLI 231 >gi|146454419|gb|ABQ41883.1| LuxR [Acidovorax citrulli] Length = 242 Score = 121 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 69/195 (35%), Gaps = 20/195 (10%) Query: 55 HNYDLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107 + S + P+ + Y D H + P W+ + + E+ + Sbjct: 52 PPIGVLSHNYPSRWVSHYIARNYYLEDPVRRHAPQAMSPYRWKDVSAQGDREAH---IMD 108 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 G+ P+ + + + + +A Y ++T F L+ R Sbjct: 109 EATDAGLADGLGLPIHEPGGR---IFLATVASHQQLTLGNDACVRAYALVTAFHALYTMR 165 Query: 168 S-------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 A LT RE CL G +S EI + +S HTVN +L +A K D + Sbjct: 166 FATEQTQIPTAVKLTSREAECLTWVAYGKSSREIGRIMRISEHTVNFHLKNAMAKFDTAS 225 Query: 221 RIQAIAKAIRFGYIC 235 R+ A +A G I Sbjct: 226 RVTAAVRAANLGLIS 240 >gi|71736210|ref|YP_276356.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482085|ref|ZP_05636126.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|71556763|gb|AAZ35974.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322567|gb|EFW78660.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320330180|gb|EFW86166.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330875327|gb|EGH09476.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330987492|gb|EGH85595.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331011444|gb|EGH91500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 254 Score = 121 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 13/176 (7%) Query: 72 YGDDFLFHFN-SGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 Y D + H + + P +W + T I + VR G+ P+ + Sbjct: 77 YQIDPVQHLAVASVSPFVWSYQPKAETVLQTFITDMHKPVVRYLHDSHMTCGVTVPIHMP 136 Query: 126 FHKN----GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERE 178 G +S+ + + G + K RS A LT RE Sbjct: 137 KGGFATLTGLCSDSSDAALEDARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRE 196 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL + +G T+ EIA++L SV TV +L SA KL A NR+QA+ +A+ + + Sbjct: 197 RECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|124268980|ref|YP_001022984.1| LuxR family transcriptional regulator [Methylibium petroleiphilum PM1] gi|124261755|gb|ABM96749.1| putative LuxR-family transcriptional regulator [Methylibium petroleiphilum PM1] Length = 237 Score = 121 bits (305), Expect = 5e-26, Method: Composition-based stats. Identities = 37/218 (16%), Positives = 75/218 (34%), Gaps = 10/218 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + K F + + +D P + N D D + H Sbjct: 22 VVRFAKRLGFETVSAITVVDHPVGDTEFVAIDNAPDAYKDAIEDPKAGQLDPVMQHCKRQ 81 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN 143 +PIIW + T + + + GI + + ++ + + + + Sbjct: 82 SVPIIW---DQSTYVSAGQGSMWEAQARFGFRTGICLALHMPEGRHFVIGVDRDQALPKD 138 Query: 144 E-----VIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 ++ + + + ++ LT RE L+ DG T+ E+ Sbjct: 139 RGEVTRLVADLQLFAVHAQDTAMRVLVPERLQLERPKLTPRELDSLRWTMDGKTAWEVGS 198 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G+S T ++ +A KL N+ QA+ KA+R G + Sbjct: 199 IMGISERTAVLHINNAMHKLACTNKHQAVLKALRLGLL 236 >gi|319943176|ref|ZP_08017459.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] gi|319743718|gb|EFV96122.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] Length = 237 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 45/237 (18%), Positives = 79/237 (33%), Gaps = 10/237 (4%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + ++ I+ A F P + I + NY Sbjct: 5 QEELIRHHADESTDMRTVFSTIEKAAHALAFDHVAYCYQASLPASKPRITLIDNYPKAWR 64 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D L PI+W V R G + V Sbjct: 65 ARYLEAGYLEQDPRLQCGARSQRPIMWTDELFSEVPA-----LWRDSHEHGLCHGWSQSV 119 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----RSSAARNLTER 177 + G G + L+ + E + + L + ++ R+LT R Sbjct: 120 QDGPGGMGMTSLSRTLPALSAHELNEKYDRMQWLAQMTHTLLSRIIRSQNAARVRHLTSR 179 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+ DG +S++IA+ L LS +TV+ ++ + KL+ N+ A+ +A+ G I Sbjct: 180 EIEVLKWTADGKSSQDIADILTLSKNTVDFHIKNTVQKLNVPNKTAAVVQAVLLGLI 236 >gi|91976651|ref|YP_569310.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] gi|91683107|gb|ABE39409.1| regulatory protein, LuxR [Rhodopseudomonas palustris BisB5] Length = 240 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 59/178 (33%), Gaps = 10/178 (5%) Query: 64 IPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 P++ Y D + S ++P W + + +G + Sbjct: 65 WPDVWSRRYFSKGYIFTDPAIRRVTSSMVPFSWTELWDHD--SPAGHRILGEAAEFGLKE 122 Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 G P+ + + L + L ++R A LT Sbjct: 123 GFTVPMVTLDGHSAGLSIAGAITELPPHLRGPVQMMAIYSFARAAHL-RERPPAPVTLTI 181 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L +G T EIA L +S H V+ K VNR+QA+ +A+R G I Sbjct: 182 READVLHWIAEGKTDWEIARILQVSEHLVDKVARQIKSKFQVVNRVQAVVQAMRAGVI 239 >gi|227823797|ref|YP_002827770.1| putative transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] gi|227342799|gb|ACP27017.1| putative transcriptional regulator, LuxR family [Sinorhizobium fredii NGR234] Length = 246 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 82/244 (33%), Gaps = 14/244 (5%) Query: 5 TLTGKKSSSLQELSPRLHLI---QNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLD 60 TL + + L+E+ R ++ + + F Y + P L L + Sbjct: 4 TLLVQFLALLEEMKTREEILPEFERLLDRCGFDFYGVV-RQPKPHENPLRLLLAGRWPES 62 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQS--IQEETVIESSGQLSVRLEGG-LLPFAG 117 I D + + W+ + + S+ +E F G Sbjct: 63 WPQIYIRKKYVVIDPTIRYLGHAQRGFRWRDTLVAFRSDPHRKRMESMMVEARNHGLFDG 122 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAA 171 FPV G + + L+ + ++ LEL S Sbjct: 123 DIFPVHGRRGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVE 182 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +T RE L DG TS +I + L +S HTV+ Y+ KL A NR A+A A R Sbjct: 183 VQMTRREMEALNYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHAVAIAFRL 242 Query: 232 GYIC 235 G I Sbjct: 243 GLIS 246 >gi|541657|dbj|BAA06489.1| LasR [Pseudomonas aeruginosa] Length = 239 Score = 121 bits (305), Expect = 6e-26, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 61/188 (32%), Gaps = 17/188 (9%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 G+ P E Y D + H +LPI W + Sbjct: 54 GNYPAAWREHYDRAGYARVDPTVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGL 110 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI-IEAHGACYQVITDFLE------LFKKR 167 G+ P+ + G + + E A IE+ ++ D+ F+ Sbjct: 111 VYGLTMPLHGARGELGALSLSVEAENRAEANRFIESVLPTLWMLKDYALQSGAGLAFEHP 170 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S LT RE LQ G TS EI+ S VN ++G+ K +R A Sbjct: 171 VSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIM 230 Query: 228 AIRFGYIC 235 A+ G I Sbjct: 231 AVNLGLIT 238 >gi|134293938|ref|YP_001117674.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134137095|gb|ABO58209.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 239 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 73/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQARN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + G+A Sbjct: 71 YIEIDSTVREGALSTNMIVWPDVDRIDPCP-----LWEDARDFGLAVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + + L I + +++ F+ L K +A LT RE L Sbjct: 126 GLLSISRHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-LPKLSPAAGVTLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLAATNKVQAVVKAIAAGLI 236 >gi|254511024|ref|ZP_05123091.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium KLH11] gi|221534735|gb|EEE37723.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium KLH11] Length = 233 Score = 121 bits (304), Expect = 6e-26, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 70/203 (34%), Gaps = 11/203 (5%) Query: 39 NSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVI 98 + I Y D + D L + P+ W ++ Sbjct: 32 AAYAGMNPAAGTIHGHVTYGDDWKNHYQEQGLHLIDPTLHMSQRSIAPVDWSRLERGKDF 91 Query: 99 ESSGQLSVRLEGGLL-PFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGA 152 Q R P GI PVR + G + T E+ L VI + Sbjct: 92 ----QRVFRDAHDFGIPDQGITIPVRGPYGDIGLLSATRGCSRDEWKKLVPNVIKDLQSL 147 Query: 153 CYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 + + + R L+ RE LQ A G + ++I + L +S TV +L S Sbjct: 148 AVHIHDNVMTSDTISRMLYHPTLSSRELEILQWAAAGKSQQDIGDILSISHRTVEVHLRS 207 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 + KL+A+ QA+ +AI G I Sbjct: 208 SREKLNALTTPQAVGRAIGIGLI 230 >gi|288960338|ref|YP_003450678.1| transcriptional regulator [Azospirillum sp. B510] gi|288912646|dbj|BAI74134.1| transcriptional regulator [Azospirillum sp. B510] Length = 287 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 54/244 (22%), Positives = 80/244 (32%), Gaps = 38/244 (15%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQ--LICELHNYDLDSGD--I 64 K+S R+ F +S P R L + + D Sbjct: 64 KRSKDKSHFLSRIIDSVGPFNVTYFGTQCTSS----PDRHVNLLTTYSEKWRMRYFDRRY 119 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG--GLLPFAGIAFPV 122 NI D L +P+ W + + SG + + G+ F + Sbjct: 120 ENI------DPVLSAARRATMPVDWDQLPKT----DSGVEDFIADALCYGIRLQGVTFSL 169 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------------KKRSSA 170 R + V S N+ ++I DF+ Sbjct: 170 RDMHQRLAIVSLQS------NDDPAVWRVRRPRIIPDFIHFSLALHSAMVSSEPDDAEEV 223 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ RE L A G TS E LGLS TVN YL +A K++A ++QA A+A+R Sbjct: 224 PCKLSPREREVLDWASRGKTSWETGMVLGLSEKTVNFYLRNACQKMNAATKVQAAAQAVR 283 Query: 231 FGYI 234 G I Sbjct: 284 EGLI 287 >gi|192290718|ref|YP_001991323.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gi|192284467|gb|ACF00848.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris TIE-1] Length = 240 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 59/178 (33%), Gaps = 10/178 (5%) Query: 64 IPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 P++ Y D + S ++P W + + +G + Sbjct: 65 WPDVWSRRYFSKGYIFTDPAIRRVTSSMVPFSWTELWDHD--SPAGHRILGEAAEFGLKE 122 Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 G P+ + + L + L ++R A LT Sbjct: 123 GFTVPMVTLDGHSAGLSIAGAMTELPPHLRGPVQMMAIYSFARAAHL-RERPPAPVTLTI 181 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L +G T EIA L +S H V+ K VNR+QA+ +A+R G I Sbjct: 182 READVLHWIAEGKTDWEIARILQVSEHLVDKVARQIKSKFQVVNRVQAVVQAMRAGVI 239 >gi|107100865|ref|ZP_01364783.1| hypothetical protein PaerPA_01001895 [Pseudomonas aeruginosa PACS2] gi|296390203|ref|ZP_06879678.1| transcriptional regulator LasR [Pseudomonas aeruginosa PAb1] Length = 223 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 64/188 (34%), Gaps = 17/188 (9%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 G+ P E Y D + H +LPI W+ +T + Sbjct: 38 GNYPAAWREHYDRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHE---FFEEASAAGL 94 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI-IEAHGACYQVITDFLE------LFKKR 167 G+ P+ + G + + E A +E+ ++ D+ F+ Sbjct: 95 VYGLTMPLHGARGELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHP 154 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S LT RE LQ G TS EI+ S VN ++G+ K +R A Sbjct: 155 VSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIM 214 Query: 228 AIRFGYIC 235 A+ G I Sbjct: 215 AVNLGLIT 222 >gi|73672744|gb|AAZ80478.1| PpuR [Pseudomonas putida] Length = 238 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 74/231 (32%), Gaps = 24/231 (10%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-- 73 + L ++ ++ NF L + A +Q LI D P+ Y Sbjct: 20 DWLAHLKILTRKLGYSNF-LIGLKPAPTDANQQVLI---------YSDYPDAWRTRYDAE 69 Query: 74 -----DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + H + P++W + S G+A P+ + Sbjct: 70 SYAAVDPVVQHCLNANRPLLW---DRDNYRRPSESEFFEEAAAHGLQQGLALPLHGPRGE 126 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQL 184 G + + ++ D+ + S +LT RE LQ Sbjct: 127 AGMLCLKPFESGPRATATMIESLPMATLLRDYAMEGMLKARIECSTPVHLTSREKEVLQW 186 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + G T+ EI+ L + ++ + + K +R A+ KAI+ I Sbjct: 187 SAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAIQQKSIT 237 >gi|115359785|ref|YP_776923.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285073|gb|ABI90589.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 229 Score = 121 bits (304), Expect = 7e-26, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 16/185 (8%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P + Y D H S L+P+IW + + ++ Q R EG + Sbjct: 49 SNYPEAWLSLYRDRAYLTIDPIAQHALSSLMPLIWG----DRIFATTEQREFRDEGRIYG 104 Query: 115 FA-GIAFPVRLGFHKNGYVIFTSEFLMLANEV----IIEAHGACYQVITDFLELFKKRSS 169 G++FP V F + L + + ++ D + S Sbjct: 105 LNDGVSFPAHSRHGDVACVSFVRQARALDDGDMPCDVPSWGALVANLMLDACRRLEAVQS 164 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A L+ RE L+ +G ++ +I+ + L+ H V ++ S K D R QA+ A Sbjct: 165 DAPCLSTRELEILKWVAEGKSTWDISRIVSLTEHGVLHHIRSIMKKFDVPTRRQAVLMAS 224 Query: 230 RFGYI 234 RFG + Sbjct: 225 RFGLL 229 >gi|49082134|gb|AAT50467.1| PA1430 [synthetic construct] Length = 240 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 64/188 (34%), Gaps = 17/188 (9%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 G+ P E Y D + H +LPI W+ +T + Sbjct: 54 GNYPAAWREHYDRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHE---FFEEASAAGL 110 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI-IEAHGACYQVITDFLE------LFKKR 167 G+ P+ + G + + E A +E+ ++ D+ F+ Sbjct: 111 VYGLTMPLHGARGELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHP 170 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S LT RE LQ G TS EI+ S VN ++G+ K +R A Sbjct: 171 VSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIM 230 Query: 228 AIRFGYIC 235 A+ G I Sbjct: 231 AVNLGLIT 238 >gi|115360781|ref|YP_777918.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|172065092|ref|YP_001815804.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|115286109|gb|ABI91584.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] gi|171997334|gb|ACB68251.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 228 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 83/239 (34%), Gaps = 31/239 (12%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++ S ++ ++ + +A +F + + P + P Sbjct: 6 RALSFDDVF---EIVAAQARALDFEMCAYGARDPLPVTRPTF-------RTRNTYPESWQ 55 Query: 70 ETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFP 121 + Y D + + P++W +++ S E A G + P Sbjct: 56 QRYIEGNYFARDPVVRYGLIYTSPLVW-------PVDACADESFWEEAKAHGVAHGWSQP 108 Query: 122 VRLGFHKNGYVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 +R + S+ + A E + + L + T Sbjct: 109 IRDKHGRIAMWSVARSADPISDLELAATESRLIYLAHAAHAVNSRLVDAPAAAMQMGPFT 168 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ A DG T+ EIA L +S T+ ++ + KL++VN+ QAI KA+ G I Sbjct: 169 TREKEVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227 >gi|170697389|ref|ZP_02888481.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170137720|gb|EDT05956.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 228 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 80/238 (33%), Gaps = 29/238 (12%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++ S ++ ++ + +A +F + + P + P Sbjct: 6 RALSFDDVF---EIVAAQARALDFEMCAYGARDPLPVTRPTF-------RTRNTYPESWQ 55 Query: 70 ETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + Y D + + P++W V + + G + P+ Sbjct: 56 QRYLEGNYFARDPVVRYGLIYTSPLVW------PVDACADEPFWEEAKAHGVAHGWSQPI 109 Query: 123 RLGFHKNGYVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 R + S+ + A E + + L + T Sbjct: 110 RDKHGRIAMWSVARSADPISDLELAATESRLIYLAHAAHAVNSRLVDAPAAAMQMGPFTT 169 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ A DG T+ EIA L +S T+ ++ + KL++VN+ QAI KA+ G I Sbjct: 170 REKEVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227 >gi|53717160|ref|YP_105961.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia mallei ATCC 23344] gi|53721911|ref|YP_110896.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|67643283|ref|ZP_00442030.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei GB8 horse 4] gi|76818142|ref|YP_337635.1| BpsR [Burkholderia pseudomallei 1710b] gi|121598108|ref|YP_989940.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei SAVP1] gi|124382764|ref|YP_001024423.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10229] gi|126442328|ref|YP_001062292.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 668] gi|126445689|ref|YP_001078154.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10247] gi|126458533|ref|YP_001075258.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106a] gi|134278985|ref|ZP_01765698.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 305] gi|167000171|ref|ZP_02265991.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei PRL-20] gi|167723232|ref|ZP_02406468.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei DM98] gi|167742204|ref|ZP_02414978.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 14] gi|167819378|ref|ZP_02451058.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 91] gi|167827752|ref|ZP_02459223.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 9] gi|167849226|ref|ZP_02474734.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei B7210] gi|167906168|ref|ZP_02493373.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei NCTC 13177] gi|167914491|ref|ZP_02501582.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 112] gi|167922390|ref|ZP_02509481.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei BCC215] gi|217418339|ref|ZP_03449846.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 576] gi|226197543|ref|ZP_03793118.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei Pakistan 9] gi|237507418|ref|ZP_04520133.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei MSHR346] gi|242313785|ref|ZP_04812802.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106b] gi|254174155|ref|ZP_04880817.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei ATCC 10399] gi|254183341|ref|ZP_04889933.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1655] gi|254193094|ref|ZP_04899529.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei S13] gi|254200806|ref|ZP_04907171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei FMH] gi|254204776|ref|ZP_04911129.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei JHU] gi|254263057|ref|ZP_04953922.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1710a] gi|254300240|ref|ZP_04967686.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 406e] gi|254357025|ref|ZP_04973300.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei 2002721280] gi|37223137|gb|AAQ90167.1| transcriptional activator [Burkholderia pseudomallei] gi|40646736|gb|AAR88244.1| BpsR [Burkholderia pseudomallei] gi|43469096|gb|AAS46624.1| BpsR [Burkholderia pseudomallei] gi|52212325|emb|CAH38349.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|52423130|gb|AAU46700.1| N-acyl homoserine lactone transcriptional regulator [Burkholderia mallei ATCC 23344] gi|76582615|gb|ABA52089.1| BpsR [Burkholderia pseudomallei 1710b] gi|121225906|gb|ABM49437.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei SAVP1] gi|124290784|gb|ABN00054.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10229] gi|126221819|gb|ABN85324.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 668] gi|126232301|gb|ABN95714.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106a] gi|126238543|gb|ABO01655.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei NCTC 10247] gi|134249404|gb|EBA49485.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 305] gi|147748418|gb|EDK55493.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei FMH] gi|147754362|gb|EDK61426.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei JHU] gi|148026052|gb|EDK84175.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei 2002721280] gi|157809975|gb|EDO87145.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 406e] gi|160695201|gb|EDP85171.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei ATCC 10399] gi|169649848|gb|EDS82541.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei S13] gi|184213874|gb|EDU10917.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1655] gi|217397643|gb|EEC37658.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 576] gi|225930152|gb|EEH26164.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei Pakistan 9] gi|234999623|gb|EEP49047.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei MSHR346] gi|238524594|gb|EEP88026.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei GB8 horse 4] gi|242137024|gb|EES23427.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1106b] gi|243063823|gb|EES46009.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia mallei PRL-20] gi|254214059|gb|EET03444.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 1710a] Length = 239 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 87/239 (36%), Gaps = 16/239 (6%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + + Q+L ++ R+ F + P + ++ Y Sbjct: 7 DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISKPVVAIFDTYPNGWM 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + D + I+W E + +++ S + GL G+A Sbjct: 64 ERYQEMNYLEVDPTVREGALSSNMIVW---PEASASDATTLWSDARDHGLAV--GVAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLT 175 G + L + I + +++ FL + K + LT Sbjct: 119 WASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFL-VPKLAPESGVALT 177 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 178 HREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|15596627|ref|NP_250121.1| transcriptional regulator LasR [Pseudomonas aeruginosa PAO1] gi|116049375|ref|YP_791822.1| transcriptional regulator LasR [Pseudomonas aeruginosa UCBPP-PA14] gi|218892698|ref|YP_002441567.1| transcriptional regulator LasR [Pseudomonas aeruginosa LESB58] gi|254234529|ref|ZP_04927852.1| transcriptional regulator LasR [Pseudomonas aeruginosa C3719] gi|254239780|ref|ZP_04933102.1| transcriptional regulator LasR [Pseudomonas aeruginosa 2192] gi|313106426|ref|ZP_07792658.1| transcriptional regulator LasR [Pseudomonas aeruginosa 39016] gi|125980|sp|P25084|LASR_PSEAE RecName: Full=Transcriptional activator protein lasR gi|9947379|gb|AAG04819.1|AE004572_7 transcriptional regulator LasR [Pseudomonas aeruginosa PAO1] gi|151326|gb|AAA25874.1| transcriptional activator LasR [Pseudomonas aeruginosa PAO1] gi|115584596|gb|ABJ10611.1| transcriptional regulator LasR [Pseudomonas aeruginosa UCBPP-PA14] gi|126166460|gb|EAZ51971.1| transcriptional regulator LasR [Pseudomonas aeruginosa C3719] gi|126193158|gb|EAZ57221.1| transcriptional regulator LasR [Pseudomonas aeruginosa 2192] gi|156106986|gb|ABU49653.1| LasR [Pseudomonas sp. M18] gi|218772926|emb|CAW28738.1| transcriptional regulator LasR [Pseudomonas aeruginosa LESB58] gi|310879160|gb|EFQ37754.1| transcriptional regulator LasR [Pseudomonas aeruginosa 39016] Length = 239 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 61/188 (32%), Gaps = 17/188 (9%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 G+ P E Y D + H +LPI W + Sbjct: 54 GNYPAAWREHYDRAGYARVDPTVSHCTQSVLPIFW---EPSIYQTRKQHEFFEEASAAGL 110 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI-IEAHGACYQVITDFLE------LFKKR 167 G+ P+ + G + + E A +E+ ++ D+ F+ Sbjct: 111 VYGLTMPLHGARGELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHP 170 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S LT RE LQ G TS EI+ S VN ++G+ K +R A Sbjct: 171 VSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIM 230 Query: 228 AIRFGYIC 235 A+ G I Sbjct: 231 AVNLGLIT 238 >gi|330888704|gb|EGH21365.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 254 Score = 121 bits (304), Expect = 8e-26, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 13/176 (7%) Query: 72 YGDDFLFHFN-SGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 Y D + H + + P +W + T I + VR G+ P+ + Sbjct: 77 YQIDPVQHLAVASVSPFVWSYQPKAETVLQTFITDMHKPVVRYLHDSHMTCGVTVPIHMP 136 Query: 126 FHKN----GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERE 178 G +S+ + + G + K RS A LT RE Sbjct: 137 KGGFATLTGLCSDSSDAALEDARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRE 196 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL + +G T+ EIA+ L SV TV +L SA KL A NR+QA+ +A+ + + Sbjct: 197 RECLSWSAEGLTAREIADHLNRSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|167839488|ref|ZP_02466172.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia thailandensis MSMB43] Length = 239 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 87/239 (36%), Gaps = 16/239 (6%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + + Q+L ++ R+ F + P + ++ Y Sbjct: 7 DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISRPVVAIFDTYPNGWM 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + D + I+W E + +++ S + GL G+A Sbjct: 64 ERYQEMNYLEVDPTVREGALSSNMIVW---PEASACDATSLWSDARDHGLAV--GVAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLT 175 G + L I + +++ FL + K + LT Sbjct: 119 WASRGVFGLLTIARHTDRLTIAEINHLTLQTNWLANMSHSLMSRFL-VPKLAPESGVALT 177 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G+G T+ EI + LG+S TVN ++ + KL A N++QA+ KAI G + Sbjct: 178 HREREVLCWTGEGKTACEIGQILGISERTVNFHVNNVLDKLGATNKVQAVVKAIAMGLV 236 >gi|2495423|sp|Q51786|PHZR_PSEFL RecName: Full=Transcriptional activator protein phzR gi|1050313|gb|AAC18899.1| shows homology to luxR family; putative [Pseudomonas fluorescens] Length = 244 Score = 121 bits (303), Expect = 8e-26, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 71/194 (36%), Gaps = 18/194 (9%) Query: 54 LHNYDLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV 106 + G+ P ++ Y D + H PI+W + + Sbjct: 56 MRPKTYMYGNYPEHWLQRYQAANYALIDPTVKHSKVSSAPILWSNELFRNCPD-----LW 110 Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV------IIEAHGACYQVITDF 160 G+A P + G + + ++ + + +A A Sbjct: 111 SEANDSSLCHGLAQPSFNTQGRVGVLSLARKDNAISLQEFEALKPVTKAFAAAALEKISA 170 Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 LE + + +ERE L+ DG TSEEI +G+ TVN + + K+ A N Sbjct: 171 LETDVRAFNTDVEFSERECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASN 230 Query: 221 RIQAIAKAIRFGYI 234 R+QA++ A+ GYI Sbjct: 231 RVQAVSYAVALGYI 244 >gi|167897824|ref|ZP_02485226.1| autoinducer-binding transcriptional regulator BpsR [Burkholderia pseudomallei 7894] Length = 239 Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 87/239 (36%), Gaps = 16/239 (6%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + + Q+L ++ R+ F + P + ++ Y Sbjct: 7 DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISKPVVAIFDTYPNGWM 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + D + I+W E + +++ S + GL G+A Sbjct: 64 ERYEEMNYLEVDPTVREGALSSNMIVW---PEASASDATTLWSDARDHGLAV--GVAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLT 175 G + L + I + +++ FL + K + LT Sbjct: 119 WASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFL-VPKLAPESGVALT 177 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 178 HREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|152989200|ref|YP_001349253.1| transcriptional regulator LasR [Pseudomonas aeruginosa PA7] gi|150964358|gb|ABR86383.1| transcriptional regulator LasR [Pseudomonas aeruginosa PA7] Length = 239 Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 64/188 (34%), Gaps = 17/188 (9%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 G+ P E Y D + H +LPI W+ +T + Sbjct: 54 GNYPAAWREHYDKAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHE---FFEEASAAGL 110 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI-IEAHGACYQVITDFLE------LFKKR 167 G+ P+ + G + + E A +E+ ++ D+ F+ Sbjct: 111 VYGLTMPLHGARGELGALSLSVEAESRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHP 170 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE LQ G TS EI+ S VN ++G+ K +R A Sbjct: 171 VNKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIM 230 Query: 228 AIRFGYIC 235 A+ G I Sbjct: 231 AVNLGLIT 238 >gi|149203939|ref|ZP_01880907.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. TM1035] gi|149142381|gb|EDM30426.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. TM1035] Length = 224 Score = 121 bits (303), Expect = 9e-26, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 16/185 (8%) Query: 63 DIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 Y D L + P+ W ++ ++ Q + Sbjct: 40 TYGADWTSHYLQHKYYEIDPTLLKARHSIAPVDWNRLERGAEFQTIFQ---AARDFGISD 96 Query: 116 AGIAFPVRLGFHKNGYVIFTSE-----FLMLANEVIIEAHGACYQVITDFLELFK-KRSS 169 G+ P+ + G + + + +L + +I A + ++ R Sbjct: 97 RGLTIPIHGPYGDVGGLSINRDCSEREWQLLISGIIGNLQAAAVHMHDMVIQSDPLTRML 156 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +L+ RE LQ G + ++I + L +S TV +L SA KL+A+ QAI +AI Sbjct: 157 NTPSLSTREIEILQWTAAGKSQQDIGDILSISHRTVEVHLRSARQKLNALTTPQAIGRAI 216 Query: 230 RFGYI 234 G I Sbjct: 217 NLGLI 221 >gi|37223205|gb|AAQ90198.1| LuxR [Aliivibrio fischeri] Length = 222 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 68/162 (41%), Gaps = 6/162 (3%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + NY + D + + S PI W +++T+ + S + ++ Sbjct: 59 IDNYPEKWRKYYDDAGLLEYDPVVDYSKSHHSPINWNVFEKKTIKKESPNV-IKEAQESG 117 Query: 114 PFAGIAFPVRLGFHKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RS 168 G +FP+ + G + F S+ + + + + A ++ ++ ++K R Sbjct: 118 LITGFSFPIHTASNGFGMLSFAHSDKDIYTDSLFLHASTNVPLMLPSLVDNYQKINLTRK 177 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + LT+RE CL A +G ++ +I++ LG S TV L Sbjct: 178 KSDSILTKREKECLAWASEGKSTWDISKILGCSERTVTFXLT 219 >gi|167584437|ref|ZP_02376825.1| transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 239 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 69/232 (29%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQEQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHK 128 D + I+W + + + A G+A Sbjct: 71 YIDIDSTVRDGALSTNLIVWPDADKAGASP------LWADARASGLAVGVAQSSWAARGA 124 Query: 129 NGYVIFTSEFLMLANEVI------IEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + + K A LT RE L Sbjct: 125 FGLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSGFMVPKLAPEANVVLTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILNISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|306850701|gb|ADN06870.1| transcriptional activator PhzR [Pseudomonas sp. CMR12a] Length = 241 Score = 121 bits (303), Expect = 1e-25, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 69/189 (36%), Gaps = 22/189 (11%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQS--IQEETVIESSGQLSVRLEGG 111 + P ++ Y D + H PI+W + +E + S + S Sbjct: 60 YSNYPEPWVQRYQAQNYALIDPTVKHSKLSSAPILWGNELFRECPQLWSEARDS------ 113 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 G+A P + G + ++ E E + + Sbjct: 114 -NLCHGLAQPSFNAQGRVGLLSLARRNKAISAEEFEALKPVTKAFAMAAHEKLSELENDD 172 Query: 172 RNL------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +L + RE L+ DG TSEEI +G+ TVN + + K+ A NR+QA+ Sbjct: 173 SSLNVQVEFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAV 232 Query: 226 AKAIRFGYI 234 + A+ GYI Sbjct: 233 SYAVALGYI 241 >gi|256368654|ref|YP_003106160.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella microti CCM 4915] gi|255998812|gb|ACU47211.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella microti CCM 4915] Length = 235 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 89/241 (36%), Gaps = 31/241 (12%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L +I+N F + ++ L L + G P+ Sbjct: 11 QSADSADQLF---EIIKNYAHDLGFEYVSYVMSIPS-----LNGSLKW--VRFGAFPDGW 60 Query: 69 IETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + Y D L + + P+IW +S GI+ P Sbjct: 61 EQRYLAQNYAEIDPLLRRGVNSIDPLIWS-----QNFFASAPQIWADAVKYGLKVGISQP 115 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RN 173 G + F L I Q++T+ L L +++ A + Sbjct: 116 CWAAQGVFGLLSFVRSGPALTPGEISMLR-RQLQMVTNLLHLSMYERVDVPAISCIGDVS 174 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG Sbjct: 175 LTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGL 234 Query: 234 I 234 + Sbjct: 235 L 235 >gi|254462681|ref|ZP_05076097.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2083] gi|206679270|gb|EDZ43757.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium HTCC2083] Length = 244 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 73/189 (38%), Gaps = 16/189 (8%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 + + E Y D L + PI WQ ++E + ++ Sbjct: 56 IGFTTYDDAWKEHYTSQRFQNIDPTLHLPMRSIAPIDWQRLREHRDFD---RVFEHARDF 112 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSE-----FLMLANEVIIEAHGACYQVITDFLELFKK 166 + G++ P+ + + G + T + + L VI E A + ++ Sbjct: 113 KIKDQGLSVPIHGPYGEVGLISVTRDCSLGTWEKLRKNVITELQTAAVSLHDTVMQSDTL 172 Query: 167 RSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + R L+ RE LQ G + +I L +S TV +L SA KL A++ QA+ Sbjct: 173 GYALRRPQLSSRECEVLQWTAAGKSQIDIGVILTISSRTVEVHLRSARSKLSALSTPQAV 232 Query: 226 AKAIRFGYI 234 +AI G+I Sbjct: 233 GRAIGMGFI 241 >gi|171315924|ref|ZP_02905153.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171098927|gb|EDT43717.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 228 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 79/238 (33%), Gaps = 29/238 (12%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++ S ++ ++ + +A +F + + P + P+ Sbjct: 6 RALSFDDVF---EIVAAQARALDFEMCAYGARDPLPVTRPTF-------RTRNTYPDSWQ 55 Query: 70 ETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + Y D + + P++W V + G + P+ Sbjct: 56 QRYVEGNYFARDPVVRYGLIYTSPLVW------PVDACADAPFWEEAKAHGVAHGWSQPI 109 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGA------CYQVITDFLELFKKRSSAARNLTE 176 R + +++ + G + L + T Sbjct: 110 RDKHGRIAMWSVARSADPISDLELAATEGRLIYLAHAAHAVNSRLADAPAAAMQMGPFTT 169 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ A DG T+ EIA L +S T+ ++ + KL++VN+ QAI KA+ G I Sbjct: 170 REKEVLKWAADGKTALEIASILSISERTITFHMQNIMEKLNSVNKTQAIVKAVLLGII 227 >gi|45453489|gb|AAS65458.1| quorum sensing transcriptional activator [Burkholderia thailandensis] Length = 239 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 47/239 (19%), Positives = 86/239 (35%), Gaps = 16/239 (6%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + + Q+L ++ R+ F + P + ++ Y Sbjct: 7 DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISKPVVAIFDTYPNGWM 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + D + I+W E + +++ S + GL G+A Sbjct: 64 ERYQEMNYLEVDPTVRDGALSSNMIVW---PEASANDATTLWSDARDHGLAV--GVAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLT 175 G + L + I + +++ FL + K + LT Sbjct: 119 WASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFL-VPKLAPESGVALT 177 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ AI G I Sbjct: 178 HREREVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVNAIAMGLI 236 >gi|23501101|ref|NP_697228.1| LuxR family transcriptional regulator [Brucella suis 1330] gi|62289164|ref|YP_220957.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|82699104|ref|YP_413678.1| transcriptional regulator LuxR family protein [Brucella melitensis biovar Abortus 2308] gi|163842459|ref|YP_001626863.1| transcriptional activator protein solR [Brucella suis ATCC 23445] gi|254694980|ref|ZP_05156808.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 3 str. Tulya] gi|254696612|ref|ZP_05158440.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 2 str. 86/8/59] gi|254700994|ref|ZP_05162822.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 5 str. 513] gi|254705366|ref|ZP_05167194.1| Transcriptional activator, LUXR family protein [Brucella suis bv. 3 str. 686] gi|254707120|ref|ZP_05168948.1| Transcriptional activator, LUXR family protein [Brucella pinnipedialis M163/99/10] gi|254709336|ref|ZP_05171147.1| Transcriptional activator, LUXR family protein [Brucella pinnipedialis B2/94] gi|254713241|ref|ZP_05175052.1| Transcriptional activator, LUXR family protein [Brucella ceti M644/93/1] gi|254716405|ref|ZP_05178216.1| Transcriptional activator, LUXR family protein [Brucella ceti M13/05/1] gi|254731525|ref|ZP_05190103.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 4 str. 292] gi|256030859|ref|ZP_05444473.1| Transcriptional activator, LUXR family protein [Brucella pinnipedialis M292/94/1] gi|256045980|ref|ZP_05448852.1| Transcriptional activator, LUXR family protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060329|ref|ZP_05450502.1| Transcriptional activator, LUXR family protein [Brucella neotomae 5K33] gi|256112692|ref|ZP_05453613.1| Transcriptional activator, LUXR family protein [Brucella melitensis bv. 3 str. Ether] gi|256158890|ref|ZP_05456740.1| Transcriptional activator, LUXR family protein [Brucella ceti M490/95/1] gi|256254264|ref|ZP_05459800.1| Transcriptional activator, LUXR family protein [Brucella ceti B1/94] gi|256258748|ref|ZP_05464284.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 9 str. C68] gi|260169762|ref|ZP_05756573.1| Transcriptional activator, LUXR family protein [Brucella sp. F5/99] gi|23346971|gb|AAN29143.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella suis 1330] gi|62195296|gb|AAX73596.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella abortus bv. 1 str. 9-941] gi|82615205|emb|CAJ10146.1| Bacterial regulatory protein, LuxR family:Autoinducer binding domain [Brucella melitensis biovar Abortus 2308] gi|163673182|gb|ABY37293.1| Transcriptional activator protein solR [Brucella suis ATCC 23445] Length = 235 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 89/241 (36%), Gaps = 31/241 (12%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L +++N F + ++ L L + G P+ Sbjct: 11 QSADSADQLF---EIVKNYAHDLGFEYVSYVMSIPS-----LNGSLKW--VRFGAFPDGW 60 Query: 69 IETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + Y D L + + P+IW +S GI+ P Sbjct: 61 EQRYLAQNYAEIDPLLRRGVNSIDPLIWS-----QNFFASAPQIWADAVKYGLKVGISQP 115 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RN 173 G + F L I Q++T+ L L +++ A + Sbjct: 116 CWAAQGVFGLLSFVRSGPALTPGEISMLR-RQLQMVTNLLHLSMYERVDVPAISCIGDVS 174 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG Sbjct: 175 LTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGL 234 Query: 234 I 234 + Sbjct: 235 L 235 >gi|331019185|gb|EGH99241.1| transcriptional regulator PsyR [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 247 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 68/189 (35%), Gaps = 17/189 (8%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ +++Y D + H + P W+ + + ++ Sbjct: 60 SNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFFWREARNAVQCVETDDF-LKRSAKYQL 118 Query: 115 FAGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKR----- 167 +G F + + + + + +A +I L K R Sbjct: 119 SSGATFTLHDASGLFAALSLCNAKQQHDFDQRIRDKAADIQMSLIRFHDRLIKTRAPHEL 178 Query: 168 --SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +A R L+ RET L+ G EIAE +S TV ++ + + KL+ QA+ Sbjct: 179 FPPTANRKLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 238 Query: 226 AKAIRFGYI 234 KAI+ G + Sbjct: 239 YKAIKMGMV 247 >gi|110681100|ref|YP_684107.1| LuxR family transcription regulator [Roseobacter denitrificans OCh 114] gi|109457216|gb|ABG33421.1| transcription regulator, LuxR family, putative [Roseobacter denitrificans OCh 114] Length = 248 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 42/188 (22%), Positives = 67/188 (35%), Gaps = 9/188 (4%) Query: 56 NYDLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL 108 + S P + Y D + P W + + G+ ++ Sbjct: 53 PLGIVSDGYPEGWVCEYLQSELFRVDPIPQLASILSRPFRWSEAPKLMRLSPEGERYMQT 112 Query: 109 EGGLLPFAGIAFPVRLGFHKNGY--VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 G+A V +N Y + F + L + I E A + EL + Sbjct: 113 LAQSGLGDGVAMQVYGPNMRNAYVGLGFGKQDPDLTADEIFELQCAAQIAHIRYCELTEF 172 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A +L+ RE LQ G ++ IAE LG+S HTV+ KLD +R A Sbjct: 173 RQRVAESLSPREVEILQWIARGKSNSVIAEILGISRHTVDTITRRIFEKLDVNDRTTAAI 232 Query: 227 KAIRFGYI 234 + + G + Sbjct: 233 RGLGSGLV 240 >gi|14586749|gb|AAK70347.1|AF333002_1 N-acyl homoserine lactone transcriptional regulator [Burkholderia cepacia] Length = 239 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 72/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + R G+A Sbjct: 71 YIEIDSTVRDGALSTNMIVWPDVDKIEPCP-----LWRDARDFGLSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K A T RE L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-VPKLSPEARVTQTAREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGASNKVQAVVKAISAGLI 236 >gi|254690492|ref|ZP_05153746.1| Transcriptional activator, LUXR family protein [Brucella abortus bv. 6 str. 870] Length = 235 Score = 120 bits (302), Expect = 1e-25, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 73/190 (38%), Gaps = 21/190 (11%) Query: 60 DSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112 G P+ + Y D L + + P+IW +S Sbjct: 52 RFGAFPDGWEQRYLAQNYAEIDPLLRRGVNSIDPLIWS-----QNFFASAPQIWADAVKY 106 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSA 170 GI+ P G + F L I Q++T+ L L +++ Sbjct: 107 GLKVGISQPCWAAQGVFGLLSFVRSGPALTPGEISMLR-RQLQMVTNLLHLSMYERVDVP 165 Query: 171 A------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A +LT RE L+ +G T+E I L +S TVN ++ + KL AVN++QA Sbjct: 166 AISCIGDVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQA 225 Query: 225 IAKAIRFGYI 234 +AKA FG + Sbjct: 226 VAKARTFGLL 235 >gi|332525929|ref|ZP_08402070.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332109480|gb|EGJ10403.1| LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 242 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 83/232 (35%), Gaps = 14/232 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 +S RL + F + + P + ++ L N D + + Sbjct: 17 ASDHATFKSRLVSFAQNLD---FQIVQAVLMIKRPSQPSVVSRLSNLPSDFAEASMDEAD 73 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + D L + +P ++ + T +E+ + GI+ + + + Sbjct: 74 SRRDPVLQRLRTASVPFVY---DQTTYVEAGAGDLWETQARYGFRTGISMSLHMPGGRQF 130 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR--------SSAARNLTERETSCL 182 E + A+E + A Q++ + R LT RE L Sbjct: 131 LFGVDREQALPADERELMRLMADLQLLAVHAQETAARVMMPKLDSLPKRPKLTPREREVL 190 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Q +G ++ I + L +S HTV +L +A KL+ ++ A+ KA+ G + Sbjct: 191 QWTREGKSAWAIGQILSMSEHTVVFHLRNAMTKLEVSSKHSAVLKAMEIGLL 242 >gi|17988041|ref|NP_540675.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1 str. 16M] gi|161618178|ref|YP_001592065.1| transcriptional activator protein solR [Brucella canis ATCC 23365] gi|189023440|ref|YP_001934208.1| LuxR family transcriptional regulator [Brucella abortus S19] gi|225626726|ref|ZP_03784765.1| Transcriptional activator protein solR [Brucella ceti str. Cudo] gi|237814657|ref|ZP_04593655.1| Transcriptional activator protein solR [Brucella abortus str. 2308 A] gi|260546462|ref|ZP_05822202.1| transcriptional activator [Brucella abortus NCTC 8038] gi|260563261|ref|ZP_05833747.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M] gi|260567174|ref|ZP_05837644.1| transcriptional activator [Brucella suis bv. 4 str. 40] gi|260759270|ref|ZP_05871618.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260760992|ref|ZP_05873335.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260885067|ref|ZP_05896681.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|261215322|ref|ZP_05929603.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|261218189|ref|ZP_05932470.1| autoinducer-binding domain-containing protein [Brucella ceti M13/05/1] gi|261221416|ref|ZP_05935697.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94] gi|261314598|ref|ZP_05953795.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261316846|ref|ZP_05956043.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261320963|ref|ZP_05960160.1| autoinducer-binding domain-containing protein [Brucella ceti M644/93/1] gi|261324304|ref|ZP_05963501.1| autoinducer-binding domain-containing protein [Brucella neotomae 5K33] gi|261751515|ref|ZP_05995224.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261756080|ref|ZP_05999789.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|261759304|ref|ZP_06003013.1| transcriptional activator [Brucella sp. F5/99] gi|265987917|ref|ZP_06100474.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|265992391|ref|ZP_06104948.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|265994134|ref|ZP_06106691.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|265997378|ref|ZP_06109935.1| autoinducer-binding domain-containing protein [Brucella ceti M490/95/1] gi|297247581|ref|ZP_06931299.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] gi|17983788|gb|AAL52939.1| transcriptional activator, luxr family [Brucella melitensis bv. 1 str. 16M] gi|161334989|gb|ABX61294.1| Transcriptional activator protein solR [Brucella canis ATCC 23365] gi|189019012|gb|ACD71734.1| Transcriptional activator, LUXR family [Brucella abortus S19] gi|225618383|gb|EEH15426.1| Transcriptional activator protein solR [Brucella ceti str. Cudo] gi|237789494|gb|EEP63704.1| Transcriptional activator protein solR [Brucella abortus str. 2308 A] gi|260096569|gb|EEW80445.1| transcriptional activator [Brucella abortus NCTC 8038] gi|260153277|gb|EEW88369.1| transcriptional activator [Brucella melitensis bv. 1 str. 16M] gi|260156692|gb|EEW91772.1| transcriptional activator [Brucella suis bv. 4 str. 40] gi|260669588|gb|EEX56528.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 4 str. 292] gi|260671424|gb|EEX58245.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 2 str. 86/8/59] gi|260874595|gb|EEX81664.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 9 str. C68] gi|260916929|gb|EEX83790.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 3 str. Tulya] gi|260920000|gb|EEX86653.1| autoinducer-binding domain-containing protein [Brucella ceti B1/94] gi|260923278|gb|EEX89846.1| autoinducer-binding domain-containing protein [Brucella ceti M13/05/1] gi|261293653|gb|EEX97149.1| autoinducer-binding domain-containing protein [Brucella ceti M644/93/1] gi|261296069|gb|EEX99565.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis B2/94] gi|261300284|gb|EEY03781.1| autoinducer-binding domain-containing protein [Brucella neotomae 5K33] gi|261303624|gb|EEY07121.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M163/99/10] gi|261739288|gb|EEY27284.1| transcriptional activator [Brucella sp. F5/99] gi|261741268|gb|EEY29194.1| autoinducer-binding domain-containing protein [Brucella suis bv. 5 str. 513] gi|261745833|gb|EEY33759.1| autoinducer-binding domain-containing protein [Brucella suis bv. 3 str. 686] gi|262551846|gb|EEZ07836.1| autoinducer-binding domain-containing protein [Brucella ceti M490/95/1] gi|262765115|gb|EEZ11036.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 3 str. Ether] gi|263003457|gb|EEZ15750.1| autoinducer-binding domain-containing protein [Brucella melitensis bv. 1 str. Rev.1] gi|264660114|gb|EEZ30375.1| autoinducer-binding domain-containing protein [Brucella pinnipedialis M292/94/1] gi|297174750|gb|EFH34097.1| LuxR family transcriptional regulator [Brucella abortus bv. 5 str. B3196] Length = 238 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 89/241 (36%), Gaps = 31/241 (12%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L +++N F + ++ L L + G P+ Sbjct: 14 QSADSADQLF---EIVKNYAHDLGFEYVSYVMSIPS-----LNGSLKW--VRFGAFPDGW 63 Query: 69 IETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + Y D L + + P+IW +S GI+ P Sbjct: 64 EQRYLAQNYAEIDPLLRRGVNSIDPLIWS-----QNFFASAPQIWADAVKYGLKVGISQP 118 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RN 173 G + F L I Q++T+ L L +++ A + Sbjct: 119 CWAAQGVFGLLSFVRSGPALTPGEISMLR-RQLQMVTNLLHLSMYERVDVPAISCIGDVS 177 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG Sbjct: 178 LTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGL 237 Query: 234 I 234 + Sbjct: 238 L 238 >gi|260756046|ref|ZP_05868394.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 6 str. 870] gi|260676154|gb|EEX62975.1| autoinducer-binding domain-containing protein [Brucella abortus bv. 6 str. 870] Length = 238 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 73/190 (38%), Gaps = 21/190 (11%) Query: 60 DSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112 G P+ + Y D L + + P+IW +S Sbjct: 55 RFGAFPDGWEQRYLAQNYAEIDPLLRRGVNSIDPLIWS-----QNFFASAPQIWADAVKY 109 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSA 170 GI+ P G + F L I Q++T+ L L +++ Sbjct: 110 GLKVGISQPCWAAQGVFGLLSFVRSGPALTPGEISMLR-RQLQMVTNLLHLSMYERVDVP 168 Query: 171 A------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A +LT RE L+ +G T+E I L +S TVN ++ + KL AVN++QA Sbjct: 169 AISCIGDVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQA 228 Query: 225 IAKAIRFGYI 234 +AKA FG + Sbjct: 229 VAKARTFGLL 238 >gi|239820479|ref|YP_002947664.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] gi|239805332|gb|ACS22398.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 235 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 47/224 (20%), Positives = 72/224 (32%), Gaps = 15/224 (6%) Query: 19 PRLHLIQNRIKAR--NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDF 76 P L Q + AR F P + YD D Sbjct: 18 PSQVLAQVSVAARQLGFEHCAYGLRTLVPFTRPKTLMFSTYDERWSRRYISAGYLQVDPT 77 Query: 77 LFHFNSGLLPIIWQS--IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + H P+IW + ++ + + G A V + G + Sbjct: 78 VAHGVHSGTPVIWSNEVFRDAPQMWDEAR-------SFGLRVGWAQSVFEPDARVGMLSL 130 Query: 135 TSEFLMLANEVIIEA----HGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 L + G + F L + LT+R+ L+ GDG T Sbjct: 131 ARSSEPLTAAEMRAKDLLFQGLVNKAHRAFCRLLGGPLAGIEPLTKRQVEVLRWTGDGKT 190 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S+EIA L +S TV+ +L +A +L A + A A A R G + Sbjct: 191 SDEIAAILCISKPTVDFHLRNAMARLGASTKSSAAAFASRLGLL 234 >gi|16519915|ref|NP_444035.1| LuxR-type transcription regulator BxrH [Sinorhizobium fredii NGR234] gi|2495427|sp|P55629|Y4QH_RHISN RecName: Full=Putative HTH-type transcriptional regulator y4qH gi|2182594|gb|AAB92463.1| LuxR-type transcription regulator BxrH [Sinorhizobium fredii NGR234] Length = 326 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 53/162 (32%), Gaps = 2/162 (1%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + G PI W + + + +GI P+R + F Sbjct: 163 PVIKESRMGAGPIRWSDMYSDASTTEYERRMFDEAAMFGLRSGITVPLRGPRGSCAIMSF 222 Query: 135 T-SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSE 192 + I A ++ + L+ RE C+ G +S Sbjct: 223 ARHCEREFHDRTIAYLQLAATHFHLRVAKIANLNAVQKIPALSLREKECVLWVARGKSSW 282 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +I + +S +TVN ++ + KL +R A KAI G I Sbjct: 283 DIGVIMRISENTVNFHIKNVMRKLGTSSRTVAAIKAISLGII 324 >gi|66047443|ref|YP_237284.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63258150|gb|AAY39246.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 254 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 13/176 (7%) Query: 72 YGDDFLFHFN-SGLLPIIWQSIQE-----ETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 Y D + H + + P +W + +T I + VR G+ P+ + Sbjct: 77 YQIDPVQHLAVASVSPFVWSYLPRAETVLKTFITDMHKPVVRYLHDSHMTCGVTVPIHMP 136 Query: 126 FHKN----GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERE 178 G S+ + + G + K RS A LT RE Sbjct: 137 KGGFATLTGLCTDGSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRE 196 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL + +G T+ EIA++L SV TV +L SA KL A NR+QA+ +A+ + + Sbjct: 197 RECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|225851721|ref|YP_002731954.1| transcriptional activator protein solR [Brucella melitensis ATCC 23457] gi|265999658|ref|ZP_06111771.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9] gi|225640086|gb|ACN99999.1| Transcriptional activator protein solR [Brucella melitensis ATCC 23457] gi|263095176|gb|EEZ18845.1| transcriptional activator [Brucella melitensis bv. 2 str. 63/9] Length = 238 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 47/190 (24%), Positives = 73/190 (38%), Gaps = 21/190 (11%) Query: 60 DSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112 G P+ + Y D L + + P+IW +S Sbjct: 55 RFGAFPDGWEQRYLAQNYAEIDPLLRRGVNSIDPLIWS-----QNFFASAPQIWADAVKY 109 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSA 170 GI+ P G + F L I Q++T+ L L +++ Sbjct: 110 GLKVGISQPCWAAQGVFGLLSFVRSGPALTPGEISMLR-RQLQMVTNLLHLSMYERVDVP 168 Query: 171 A------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A +LT RE L+ +G T+E I L +S TVN ++ + KL AVN++QA Sbjct: 169 AISCIGDVSLTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQA 228 Query: 225 IAKAIRFGYI 234 +AKA FG + Sbjct: 229 VAKARTFGLL 238 >gi|28871673|ref|NP_794292.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28854925|gb|AAO57987.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato str. DC3000] Length = 254 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 13/176 (7%) Query: 72 YGDDFLFHFN-SGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 Y D + H + + P +W T + + VR G+ P+ + Sbjct: 77 YQIDPVQHLAVASVSPFVWSYQPRAETVLQTFLTDMHKPVVRYLHDSHMTCGLTVPIHMP 136 Query: 126 FHKN----GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERE 178 G +S+ + + G + K RS A LT RE Sbjct: 137 KGGFATLTGLCSDSSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRE 196 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL + +G T+ EIA++L SV TV +L SA KL A NR+QA+ +A+ + + Sbjct: 197 RECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|238027315|ref|YP_002911546.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] gi|237876509|gb|ACR28842.1| Autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 234 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 67/209 (32%), Gaps = 13/209 (6%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 + P + NY + L D N+ P++W S Sbjct: 33 GYEFVAYGIRRPLPLSNPPSLTVSNYPARWQERYQGLRLAEIDPVARAANASDRPVVWSS 92 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS------EFLMLANEV 145 + S Q + G + R G + E NE Sbjct: 93 QGND-----SDQAFWQEASSFGLMHGWSSATRGAEGTLGVLSLARGGDAIDEVERDRNEF 147 Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 I+ A NLT RET L+ DG T+ EI+ L +S TV Sbjct: 148 IVHWLANVAHAALAPFLPAAGEPEA--NLTSRETDVLKWTADGKTAYEISRILSISESTV 205 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 N ++ + KL N+IQA+AKA G + Sbjct: 206 NFHVKNIMSKLGTSNKIQAVAKAALTGML 234 >gi|86138963|ref|ZP_01057534.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. MED193] gi|85824194|gb|EAQ44398.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. MED193] Length = 255 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 15/190 (7%) Query: 58 DLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 G + Y D + P+ W+ + + + +E Sbjct: 66 HYYFGTYSEAWTQQYQEKNYTRIDPVVIGCYQRFHPVDWRRLDWSSK-PAREFFDAAMEH 124 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------ 164 G + G + P+R + + A + + + +I + Sbjct: 125 G-VGNQGYSIPIRGPNGQFALFSVSHHCDDAAWDKFCDQNSRDLILIGHYFNRKALEFEP 183 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + A+ L+ RE L L G GY+ ++A+ L +S HT+ Y+ SA KL A+N A Sbjct: 184 DRAPEQAQPLSPRELDALTLLGIGYSRAQVAQTLSISEHTLRVYIESARFKLGALNTTHA 243 Query: 225 IAKAIRFGYI 234 IA+A+ G I Sbjct: 244 IARAVSCGLI 253 >gi|159040348|ref|YP_001539601.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157919183|gb|ABW00611.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 219 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK--KRSSAARNL 174 L +G+++ + L + + A GA Q++ + + + SS+ L Sbjct: 99 LRAGASGFLLKDAPPAQLLHGIRTVASGAALLAPEVTRQLVGRYAARIRPAEDSSSEIPL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L DG ++ EIA L +S TV Y+ KLD +R+QA+ A R G + Sbjct: 159 TPRELEVLRLIADGLSNSEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRSGLV 218 Query: 235 C 235 Sbjct: 219 T 219 >gi|83716740|ref|YP_439002.1| LuxR family transcriptional regulator [Burkholderia thailandensis E264] gi|167577397|ref|ZP_02370271.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167615548|ref|ZP_02384183.1| transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257142109|ref|ZP_05590371.1| LuxR family transcriptional regulator [Burkholderia thailandensis E264] gi|83650565|gb|ABC34629.1| transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 230 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 64/180 (35%), Gaps = 12/180 (6%) Query: 64 IPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 P+ +E Y D P W I + E + + Sbjct: 52 YPSEWVEHYTRNDYFTIDPVHRAAFRYSTPFPWNDIATSNLRE---RHLLMEAEDAGLDN 108 Query: 117 GIAFPVRLGFHKNGYVIFTS-EFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNL 174 GI+ P+ + V + A+ A+ Q + R + +L Sbjct: 109 GISIPLHQPLGRVLLVSLSGTAPTHDADAKWRNAYLLGMQFNLQLQSMRTCRPIPPSVHL 168 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE CL G +S IA L +S +TV+ ++ +A KL+ +R A KA R G I Sbjct: 169 TDREQMCLTWVARGKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228 >gi|213966697|ref|ZP_03394848.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato T1] gi|301383210|ref|ZP_07231628.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato Max13] gi|302059053|ref|ZP_07250594.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato K40] gi|302133729|ref|ZP_07259719.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928547|gb|EEB62091.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. tomato T1] gi|331018431|gb|EGH98487.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 254 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 13/176 (7%) Query: 72 YGDDFLFHFN-SGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 Y D + H + + P +W T + + VR G+ P+ + Sbjct: 77 YQIDPVQHLAVASVSPFVWSYQPRAETVLQTFLTDMHKPVVRYLHDSHMTCGLTVPIHMP 136 Query: 126 FHKN----GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERE 178 G +S+ + + G + K RS A LT RE Sbjct: 137 KGGFATLTGLCSDSSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRE 196 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL + +G T+ EIA++L SV TV +L SA KL A NR+QA+ +A+ + + Sbjct: 197 RECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|254718404|ref|ZP_05180215.1| Transcriptional activator, LUXR family protein [Brucella sp. 83/13] gi|306840172|ref|ZP_07472955.1| LuxR family transcriptional regulator [Brucella sp. NF 2653] gi|306844457|ref|ZP_07477047.1| LuxR family transcriptional regulator [Brucella sp. BO1] gi|306275270|gb|EFM57020.1| LuxR family transcriptional regulator [Brucella sp. BO1] gi|306404737|gb|EFM61033.1| LuxR family transcriptional regulator [Brucella sp. NF 2653] Length = 235 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 89/241 (36%), Gaps = 31/241 (12%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L +++N F + ++ L L + G P+ Sbjct: 11 QSADSADQLF---EIVKNYAHDLGFEYVSYVMSIPS-----LNGSLKW--VRFGAFPDGW 60 Query: 69 IETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + Y D L + + P+IW +S GI+ P Sbjct: 61 EQRYLAQNYAEIDPLLRRGVNSIDPLIWS-----QNFFASAPQIWADAVKYGLKVGISQP 115 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RN 173 G + F L I Q++T+ L L +++ A + Sbjct: 116 CWAAQGVFGLLSFVRTGPALTPGEISMLR-RQLQMVTNLLHLSMYERVDVPAISCIGDVS 174 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG Sbjct: 175 LTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGL 234 Query: 234 I 234 + Sbjct: 235 L 235 >gi|229592722|ref|YP_002874841.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229364588|emb|CAY52478.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 236 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 81/229 (35%), Gaps = 9/229 (3%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 K E++ ++ N+ F + + Q E NY + + N Sbjct: 11 KLEGENEITSVFEMVINQTYELGFQYCSFKMSSQVSENQTNPIEFTNYPKEWTTVYNQAR 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQS--IQEETVIESSGQ---LSVRLEGGLLPFAGIAFPVRL 124 D + H +LP++W+ ++ + S Q ++V + F G+ + L Sbjct: 71 YFDVDPVVKHCKRCVLPVVWEGTLFKDAPSLWSLAQTLNVNVAWTQAVHDFQGVFSMLTL 130 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + S + + + K + LT RET L+ Sbjct: 131 SRGTDDV----SPVELYEKAGHVLWLCHAMHAVVAQKYAGKPSALPPSKLTPRETEILKW 186 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + G T+ +IA L LS TV ++ S KL N+I A+ A + G Sbjct: 187 SAMGKTASDIATILCLSERTVGFHISSTFKKLGVNNKIAAVLCASKAGL 235 >gi|121606401|ref|YP_983730.1| regulatory protein, LuxR [Polaromonas naphthalenivorans CJ2] gi|120595370|gb|ABM38809.1| regulatory protein, LuxR [Polaromonas naphthalenivorans CJ2] Length = 222 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 66/161 (40%), Gaps = 6/161 (3%) Query: 75 DFLFHFNSGLLPII-WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 DF + P++ WQ I + + L G IAFP+ +G Y+ Sbjct: 67 DFGAPWRDSDAPLVAWQDISRAAFGDLGRWRRLWLAHGFQSVVRIAFPLTVGRAFECYLF 126 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 ++ E + + + + + + A L+ RE CL LA G T+ + Sbjct: 127 SARQWPD-----RTEPSQLAWSALNIWPLVKRALAQARNPLSPRELECLDLAFQGMTARK 181 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L S TVN +L +A KL N++ A+ +A FG I Sbjct: 182 TGDMLACSERTVNFHLANAMNKLKVDNKMAAVQRACWFGLI 222 >gi|222150233|ref|YP_002551190.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221737215|gb|ACM38178.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 246 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 59/191 (30%), Gaps = 16/191 (8%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIES---SGQLSVRLEG 110 +G P + Y D + + P W + Q + Sbjct: 56 AGRWPEKWPQVYITKKFVLIDPAIRYLAQAQRPFRWSETLTAFSQDPHFKRMQRMMMDAQ 115 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE------LF 164 G FP+ + + L I+ E L Sbjct: 116 RFGLEEGYIFPIHGRGGLLANMTIGGRPVELTPIEIMLFDTVAKCAFWRLAEINGEDELL 175 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L G+G TS E+++ L +S HTV+ Y+ KL+A NR Sbjct: 176 SMVQKVDVRLTRRELEILNYLGEGMTSNEMSKLLEISNHTVDWYVNELQDKLNAKNRQHM 235 Query: 225 IAKAIRFGYIC 235 +A A R G I Sbjct: 236 VAIAYRLGLIS 246 >gi|4103042|gb|AAD12726.1| transcriptional activator [Burkholderia cepacia] Length = 239 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 73/232 (31%), Gaps = 16/232 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + Q+L R+ R+ F + P + + Y Sbjct: 14 AAEDEQQLFQRIAAYSKRL---GFEYCCYGIRVPLPVSKPAVAIFDTYPDGWMAHYQAQN 70 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + I+W + + G+A Sbjct: 71 YIEIDSTVRDGALNTNMIVWPDVDRIDPCP-----LWQDARDFGLSVGVAQSSWAARGAF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + +++ F+ + K +A LT R+ L Sbjct: 126 GLLSIARHADRLTPAEINMLTLQTNWLANLSHSLMSRFM-VPKLSPAAGVTLTARDREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 185 CWTAEGKTACEIGQILSISERTVNFHVNNILEKLGATNKVQAVVKAISAGLI 236 >gi|53716260|ref|YP_106160.1| LuxR family transcriptional regulator [Burkholderia mallei ATCC 23344] gi|53722590|ref|YP_111575.1| N-acylhomoserine lactone-dependent regulatory protein [Burkholderia pseudomallei K96243] gi|67640560|ref|ZP_00439362.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei GB8 horse 4] gi|76818021|ref|YP_335776.1| LuxR family transcriptional regulator [Burkholderia pseudomallei 1710b] gi|124383134|ref|YP_001025820.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10229] gi|126442943|ref|YP_001063209.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 668] gi|126446904|ref|YP_001077903.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei NCTC 10247] gi|126457976|ref|YP_001076161.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106a] gi|134281979|ref|ZP_01768685.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 305] gi|167002385|ref|ZP_02268175.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei PRL-20] gi|167724282|ref|ZP_02407518.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei DM98] gi|167743255|ref|ZP_02416029.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 14] gi|167820433|ref|ZP_02452113.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 91] gi|167828803|ref|ZP_02460274.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 9] gi|167850259|ref|ZP_02475767.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei B7210] gi|167898862|ref|ZP_02486263.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 7894] gi|167907182|ref|ZP_02494387.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei NCTC 13177] gi|167915548|ref|ZP_02502639.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 112] gi|167923392|ref|ZP_02510483.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei BCC215] gi|217425142|ref|ZP_03456637.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 576] gi|226195987|ref|ZP_03791573.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pakistan 9] gi|237510506|ref|ZP_04523221.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242313819|ref|ZP_04812836.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106b] gi|254176584|ref|ZP_04883242.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei ATCC 10399] gi|254185131|ref|ZP_04891720.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1655] gi|254186897|ref|ZP_04893413.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pasteur 52237] gi|254194457|ref|ZP_04900889.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei S13] gi|254201028|ref|ZP_04907393.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei FMH] gi|254204993|ref|ZP_04911346.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei JHU] gi|254264301|ref|ZP_04955166.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1710a] gi|254301416|ref|ZP_04968860.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 406e] gi|254359112|ref|ZP_04975384.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei 2002721280] gi|52213004|emb|CAH39042.1| putative N-acylhomoserine lactone-dependent regulatory protein [Burkholderia pseudomallei K96243] gi|52422230|gb|AAU45800.1| transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|76582494|gb|ABA51968.1| transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] gi|126222434|gb|ABN85939.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 668] gi|126231744|gb|ABN95157.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106a] gi|126239758|gb|ABO02870.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei NCTC 10247] gi|134246508|gb|EBA46596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 305] gi|147748640|gb|EDK55715.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei FMH] gi|147754579|gb|EDK61643.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei JHU] gi|148028299|gb|EDK86259.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei 2002721280] gi|156105360|gb|ABU49179.1| BpsR3 [Burkholderia pseudomallei] gi|157810944|gb|EDO88114.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 406e] gi|157934581|gb|EDO90251.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pasteur 52237] gi|160697626|gb|EDP87596.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei ATCC 10399] gi|169651208|gb|EDS83901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei S13] gi|184215723|gb|EDU12704.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1655] gi|217391747|gb|EEC31774.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 576] gi|225931880|gb|EEH27881.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei Pakistan 9] gi|235002711|gb|EEP52135.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238521303|gb|EEP84756.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei GB8 horse 4] gi|242137058|gb|EES23461.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1106b] gi|243061949|gb|EES44135.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia mallei PRL-20] gi|254215303|gb|EET04688.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia pseudomallei 1710a] gi|261827149|gb|ABM99449.2| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] Length = 230 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 65/180 (36%), Gaps = 12/180 (6%) Query: 64 IPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 P+ +E Y D P W + + E + + Sbjct: 52 YPSEWVEHYTRNDYFAIDPVHRAAFRYSTPFSWNDVATANLRE---RHLLMEAEDAGLDN 108 Query: 117 GIAFPVRLGFHKNGYVIFTS-EFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNL 174 GI+ P+ + V + A+ A+ Q F + R + +L Sbjct: 109 GISIPLHQPLGRVLLVSLSGTAPTHDADAKWRNAYLLGMQFNLQFQSMRTCRPIPPSVHL 168 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE CL G +S IA L +S +TV+ ++ +A KL+ +R A KA R G I Sbjct: 169 TDREQMCLTWVARGKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228 >gi|114764851|ref|ZP_01444033.1| autoinducer-binding transcriptional regulator LuxR [Pelagibaca bermudensis HTCC2601] gi|114542737|gb|EAU45760.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius sp. HTCC2601] Length = 223 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 21/193 (10%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 G + Y D + P+ W+++ + + L L G Sbjct: 35 YGCGTYTPDWLARYVAQGYLRVDPVIQGCFQRFHPVDWKALDWSSKA-ARAFLKDALRHG 93 Query: 112 LLPFAGIAFPVRLGFHKNGY---------VIFTSEFLMLANEVIIEAHGACYQVITDFLE 162 L G P+R + +++S E+I+ AHG + + Sbjct: 94 LGN-QGFTVPIRGPNGQFALFTVNHGCEDALWSSFIAQWRAELILAAHGINAKALE---L 149 Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + S A L+ RE ++L G + ++A +L +S HTV Y+ A KL A+N Sbjct: 150 MPGPASQAPVALSPRELDAMRLLASGLSRAQVAAELNISEHTVRVYIEGARFKLGALNTT 209 Query: 223 QAIAKAIRFGYIC 235 A+A+A+ G I Sbjct: 210 HAVARAMSCGLIA 222 >gi|28871016|ref|NP_793635.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato str. DC3000] gi|13182979|gb|AAK15017.1|AF234628_3 PsmR [Pseudomonas syringae pv. maculicola] gi|28854266|gb|AAO57330.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato str. DC3000] Length = 247 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 17/189 (8%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ +++Y D + H + P W+ + + ++ Sbjct: 60 SNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFFWREARNAVQCVETDDF-LKRSAKYQL 118 Query: 115 FAGIAFPVRLGFHKNGYVIF--TSEFLMLANEVIIEAHGACYQVITDFLELFKKR----- 167 +G F + + + + +A +I L K R Sbjct: 119 SSGATFTLHDASGLFAALSLCNAKQQHDFDQRIRDKAADIQMSLIRFHDRLIKTRAPHEL 178 Query: 168 --SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +A L+ RET L+ G EIAE +S TV ++ + + KL+ QA+ Sbjct: 179 FPPTANCKLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 238 Query: 226 AKAIRFGYI 234 KAI+ G + Sbjct: 239 YKAIKMGMV 247 >gi|149193353|gb|ABR21211.1| PhzR [Pseudomonas chlororaphis subsp. aureofaciens] Length = 241 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 69/189 (36%), Gaps = 18/189 (9%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 G+ P ++ Y D + H PI+W + + Sbjct: 58 YMYGNYPEDWVQRYQAANYAVIDPTVKHSKVSSSPILWSNELFRGCPD-----LWSEAND 112 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFK 165 G+A P + G + S A +V+ +A A LE Sbjct: 113 SNLRHGLAQPSFNTQGRVGVLSLARKDNPISLQEFEALKVVTKAFAAAVHEKISELESDV 172 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + + RE L+ DG TSEEI +G+ TVN + + K+ A NR+QA+ Sbjct: 173 RVFNTDVEFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAV 232 Query: 226 AKAIRFGYI 234 + A+ GYI Sbjct: 233 SYAVAMGYI 241 >gi|91789884|ref|YP_550836.1| LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91699109|gb|ABE45938.1| transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 208 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 79/202 (39%), Gaps = 10/202 (4%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPII-WQSI 92 AL + + +L+ LH L D L E+ DF + P++ WQ I Sbjct: 16 ALMVLGPDPFGGQEDRLVLALHPPRLL--DAAEALAES--RDFGAPWRDSDAPLVAWQDI 71 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA 152 + L G IAFP+ +G Y+ F EA Sbjct: 72 SRSAFENLGRWRRLWLGHGYQSVVRIAFPLTVGRAFECYL-----FSPRQWHDRSEAALL 126 Query: 153 CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 + + + L + + A L+ RE CL LA G T+ E + L S TVN +L +A Sbjct: 127 AWSALNIWPLLKRVLAEARSPLSPRELECLSLAFQGRTARESGDILVCSERTVNFHLSNA 186 Query: 213 TVKLDAVNRIQAIAKAIRFGYI 234 KL N++ AI +A FG I Sbjct: 187 MAKLKVDNKLAAIQRACWFGLI 208 >gi|330942061|gb|EGH44732.1| transcriptional regulator LasR [Pseudomonas syringae pv. pisi str. 1704B] Length = 239 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 68/188 (36%), Gaps = 19/188 (10%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG-GLL 113 D Y D + H S PI+W +++ ++ QL R E G Sbjct: 54 SDYSQAWRAIYDANDYSRIDPVVSHCMSSTSPIVWN----DSIFKTPLQLEFREESKGHG 109 Query: 114 PFAGIAFPVRLGFHKNGYVIF---TSEFLMLANEVIIEAHGAC----YQVITDFLELFKK 166 G++ P+ + G + + L + G Y V T ++ Sbjct: 110 VVQGVSLPLHGMAGQVGVLSVRLDSIPQHQLKYHIARILPGLALIRDYAVDTFLSLADER 169 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + L+ RE L+ + G T+ EIA L S +N + K + +R AI Sbjct: 170 EPNNIVQLSHRELEVLKWSAFGKTTWEIARILSCSEANINYHFAKVRKKFNVGSRRMAIV 229 Query: 227 KAIRFGYI 234 KA++ G + Sbjct: 230 KALQTGLL 237 >gi|319943177|ref|ZP_08017460.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] gi|319743719|gb|EFV96123.1| autoinducer-binding transcriptional regulator [Lautropia mirabilis ATCC 51599] Length = 236 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 81/243 (33%), Gaps = 25/243 (10%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS- 61 ++ L G S IQ +A F + P L Sbjct: 5 QDDLIGAVSGDSASEREVFECIQRASRALGFQHVSYGFQAPLP--------LSRPKFTWL 56 Query: 62 GDIPNILIETYGD-------DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 D P Y D + P IW V E L R Sbjct: 57 NDYPGDWQTHYMDAGYPAVDPRIIRARQSSEPFIWNETLFSEVPELWADLQARGIQHGWS 116 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEV---IIEAHGACYQVITDFLELFKKR-SSA 170 + + P G + + ++ + F +L + R +S Sbjct: 117 QSTLHEP-----GGIGMLSLCRSTPITEQDLQTRLQHMQWLALLAHKAFSKLIRARIASN 171 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LTERE L+ DG ++++IAE L LS +TV+ ++ ++ KLD N+ A+ +A+ Sbjct: 172 APSLTERELEVLRWTADGKSAQDIAEILLLSKNTVDFHIRNSINKLDVPNKTAAVVRAVL 231 Query: 231 FGY 233 G Sbjct: 232 LGL 234 >gi|145594985|ref|YP_001159282.1| response regulator receiver [Salinispora tropica CNB-440] gi|145304322|gb|ABP54904.1| response regulator receiver [Salinispora tropica CNB-440] Length = 220 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 25/152 (16%) Query: 109 EGGLLPFAGIAFPVR----------------LGFHKNGYVIFTSEFLMLANEVIIEAHGA 152 LL AG+A PV+ L +G+++ + L + + A GA Sbjct: 68 ASRLLAGAGVANPVKVLVVTTFNLDEYVYEALRAGASGFLLKDAPPAQLLHGIRTVATGA 127 Query: 153 C-------YQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 Q++ + + SS LT RE L+L DG ++ EIA L +S Sbjct: 128 ALLAPEVTRQLVGRYAARIRPAEGSSGDIPLTPRELEVLRLIADGLSNSEIAATLVISQE 187 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 TV Y+ KLD +R+QA+ A R G + Sbjct: 188 TVKTYVSRILTKLDLRDRVQAVVYAYRSGLVT 219 >gi|265983368|ref|ZP_06096103.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13] gi|264661960|gb|EEZ32221.1| autoinducer-binding domain-containing protein [Brucella sp. 83/13] Length = 238 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 89/241 (36%), Gaps = 31/241 (12%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L +++N F + ++ L L + G P+ Sbjct: 14 QSADSADQLF---EIVKNYAHDLGFEYVSYVMSIPS-----LNGSLKW--VRFGAFPDGW 63 Query: 69 IETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + Y D L + + P+IW +S GI+ P Sbjct: 64 EQRYLAQNYAEIDPLLRRGVNSIDPLIWS-----QNFFASAPQIWADAVKYGLKVGISQP 118 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RN 173 G + F L I Q++T+ L L +++ A + Sbjct: 119 CWAAQGVFGLLSFVRTGPALTPGEISMLR-RQLQMVTNLLHLSMYERVDVPAISCIGDVS 177 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG Sbjct: 178 LTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGL 237 Query: 234 I 234 + Sbjct: 238 L 238 >gi|299065227|emb|CBJ36393.1| Transcriptional activator protein solR [Ralstonia solanacearum CMR15] Length = 236 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 83/230 (36%), Gaps = 14/230 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + ++L ++ + ++ F + P + + Y Sbjct: 15 AQDERQLFRQIASVVRQL---GFDYCCYGIRVPLPVSKPAVAIFDTYPAGWMAHYQASGF 71 Query: 71 TYGDDFLFHFNSGLLPIIW--QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH- 127 D + S I+W E + S R G + A ++ F Sbjct: 72 LEVDPTVRAGASSSDLIVWPVSIRDEAARLWSDA----RDFGLNVGVARSSWTAHGAFGL 127 Query: 128 ---KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G ++ L + + +++ FL + K ++ LT RE L Sbjct: 128 LTLARGADPLSAAELEQLSATTNWLANLAHALMSPFL-MPKLVPESSAALTAREREVLCW 186 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G I Sbjct: 187 TGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIAIGLI 236 >gi|330952863|gb|EGH53123.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 254 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 74/196 (37%), Gaps = 12/196 (6%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE-----ETVIESSGQLS 105 + L N D + D + + P +W +T I + Sbjct: 57 LLSLRNTPADWYALWCSQGYYQIDPVQHLAVASVSPFVWSYQPRAETVLKTFITDMHKPV 116 Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNG---YVIFTSEFLMLANEVIIEAH----GACYQVIT 158 VR G+ P+ + + + L + A +Q + Sbjct: 117 VRYLHDSHMTCGVTVPIHMPKGGFATLTGLCADGSDVALEDARQSLAEFGLLAHAFQEVA 176 Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L K RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A Sbjct: 177 YPLFDQKIRSCNAIRLTPRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGA 236 Query: 219 VNRIQAIAKAIRFGYI 234 NR+QA+ +A+ + + Sbjct: 237 KNRVQAVVRAVHYRLL 252 >gi|330878281|gb|EGH12430.1| transcriptional regulator PsyR [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 247 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 17/189 (8%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ +++Y D + H + P W+ + + ++ Sbjct: 60 SNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFFWREARNAVQCVETDDF-LKRSAKYQL 118 Query: 115 FAGIAFPVRLGFHKNGYVIF--TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 +G F + + + + +A +I L K R+ Sbjct: 119 SSGATFTLHDASGLFAALSLCNAKQQHDFDQRIRDKAADIQMSLIRFHDRLIKTRAPHEL 178 Query: 173 -------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RET L+ G EIAE +S TV ++ + + KL+ QA+ Sbjct: 179 FPPTVNCKLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 238 Query: 226 AKAIRFGYI 234 KAI+ G + Sbjct: 239 YKAIKMGMV 247 >gi|163734517|ref|ZP_02141956.1| transcription regulator, LuxR family, putative [Roseobacter litoralis Och 149] gi|161392010|gb|EDQ16340.1| transcription regulator, LuxR family, putative [Roseobacter litoralis Och 149] Length = 267 Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 68/188 (36%), Gaps = 9/188 (4%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGL-------LPIIWQSIQEETVIESSGQLSVRL 108 + S P + Y + LF + P W + + G+ ++ Sbjct: 72 PLGIVSDGFPEGWVCEYLESELFRVDPIPQLASILSRPFRWSEAPKLMRLSQEGERYMQT 131 Query: 109 EGGLLPFAGIAFPVRLGFHKNGY--VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 G+A V +N Y + F L ++ I E A + EL + Sbjct: 132 LADSGLGDGVAMQVYGPNMRNAYVGLGFGEHDPNLTSDEIFELQCAAQIAHIRYCELTEY 191 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A L+ RE LQ G ++ IAE LG+S HTV+ KLD +R A Sbjct: 192 RQRTADTLSPREVEILQWIARGKSNSVIAEILGISRHTVDTITRRIFEKLDVNDRTTAAI 251 Query: 227 KAIRFGYI 234 + + G + Sbjct: 252 RGLGSGLV 259 >gi|330969598|gb|EGH69664.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 254 Score = 119 bits (298), Expect = 4e-25, Method: Composition-based stats. Identities = 45/176 (25%), Positives = 70/176 (39%), Gaps = 13/176 (7%) Query: 72 YGDDFLFHFN-SGLLPIIWQSIQE-----ETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 Y D + H + + P +W +T I + VR G+ P+ + Sbjct: 77 YQIDPVQHLAVASVSPFVWSYQPRAETVLKTFITDMHKPVVRYLHDSHMTCGVTVPIHMP 136 Query: 126 FHKN----GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERE 178 G S+ + + G + K RS A LT RE Sbjct: 137 KGGFATLTGLCTDGSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKIRSCNAIRLTPRE 196 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL + +G T+ EIA++L SV TV +L SA KL A NR+QA+ +A+ + + Sbjct: 197 RECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|327190710|gb|EGE57792.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 240 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 56/180 (31%), Gaps = 2/180 (1%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLP 114 N+ + D + + P + E + L Sbjct: 60 NWPAEMVDYYDAHNLMVDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGM 119 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 G FPV G + + E+ A + +L Sbjct: 120 EKGAYFPVHDAAGGRGAMSISGSRNFTMLEMAKILFIATL-IYDRLSQLTLNEKHKPIAF 178 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T E CL+L G S EIA+ L LS + VN ++GS KL R QA+ A+R I Sbjct: 179 TSSELDCLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238 >gi|76057938|emb|CAJ30486.1| PlaR protein [Burkholderia plantarii] Length = 240 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 48/233 (20%), Positives = 84/233 (36%), Gaps = 19/233 (8%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + Q+L ++ R+ F + P Q L+ Y Sbjct: 15 AENEQQLFHQVSAYSKRL---GFEYCCYGIRVPQPGSQPLVEIFDTYPPGWMAHYQARNY 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKN 129 D + + IIW +++ Q S+ + + G+A Sbjct: 72 IEIDPTVRDGAASPNMIIW------PDADAAEQPSLWRDARDFGMSVGVAQSSWAARGVF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + ++ FL + K +A+ +LT+RE L Sbjct: 126 GLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFL-VPKLSPAASISLTKREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234 +G T+ EI E+L +S TV ++ + KL A N++QA + KAI G I Sbjct: 185 SWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVVVKAIGMGLI 237 >gi|330879513|gb|EGH13662.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 254 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 13/176 (7%) Query: 72 YGDDFLFHFN-SGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 Y D + H + + P +W T I + VR G+ P+ + Sbjct: 77 YQIDPVQHLAVASVSPFVWSYQPRAETVLQTFITDMHKPVVRYLHDSHMTCGVTVPIHMP 136 Query: 126 FHKN----GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERE 178 G +S+ + + G + K RS A LT RE Sbjct: 137 KGGFATLTGLCSDSSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRE 196 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL + +G T+ EIA++L SV T+ +L SA KL A NR+QA+ +A+ + + Sbjct: 197 RECLSWSAEGLTAREIADQLNRSVATITLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|56695286|ref|YP_165634.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria pomeroyi DSS-3] gi|56677023|gb|AAV93689.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria pomeroyi DSS-3] Length = 239 Score = 118 bits (297), Expect = 4e-25, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 64/190 (33%), Gaps = 15/190 (7%) Query: 59 LDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 P E Y D + P+ W+ + + + Sbjct: 51 YGCATYPKAWQERYLERNYHRIDPVILGCFQRFHPVDWKRLDWSGKVAKA--FLQDALKH 108 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------FK 165 + G + P+R + A E +G +I F Sbjct: 109 GVGNQGYSIPIRGPNGQFALFTVNHVCDDQAWSEFTEIYGRDLILIAHFFNRKALEFERS 168 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ RNL+ RE + L GY+ ++A L +S HT+ Y+ SA KL A+N AI Sbjct: 169 RQPDQPRNLSPREVDAMTLLALGYSRAQVAHSLSISEHTLRVYIESARFKLGALNTTHAI 228 Query: 226 AKAIRFGYIC 235 A A+ G I Sbjct: 229 ATAMSRGLIV 238 >gi|46371737|gb|AAS90557.1| transcriptional activator [Burkholderia pseudomallei] Length = 239 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 87/239 (36%), Gaps = 16/239 (6%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L + + Q+L ++ R+ F + P + ++ Y Sbjct: 7 DAYLQFSAAENEQQLFQQIAAYTKRL---GFEYCCYGIRVPLPISKPVVAIFDTYPNGWM 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + + D + I+W E + +++ S + GL G+A Sbjct: 64 ERYQEMNYLEVDPTVREGALSSNMIVW---PEASASDATTLWSDARDHGLAV--GVAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLT 175 G + L + I + +++ FL + K + LT Sbjct: 119 WASRGVFGLLTIARHTDRLTSAEINHLTLQANWLANMSHSLMSRFL-VPKLAPESGVALT 177 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G+G T+ EI + L +S TVN ++ + KL A N++QA+ KAI G I Sbjct: 178 HRERKVLCWTGEGKTACEIGQILSISERTVNFHVNNILDKLGATNKVQAVVKAIAMGLI 236 >gi|301382983|ref|ZP_07231401.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato Max13] gi|302062866|ref|ZP_07254407.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato K40] gi|302131657|ref|ZP_07257647.1| transcriptional regulator PsyR [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 247 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 66/189 (34%), Gaps = 17/189 (8%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ +++Y D + H + P W+ + + ++ Sbjct: 60 SNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFFWREARNAVQCVETDDF-LKRSAKYQL 118 Query: 115 FAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFKKR-- 167 +G F + + + +F + + + + ++ Sbjct: 119 SSGATFTLHDASGLFAALSLCNAKQQHDFDQRIRDKTADIQMSLIRFHDRLIKTRAPHEL 178 Query: 168 --SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +A L+ RET L+ G EIAE +S TV ++ + + KL+ QA+ Sbjct: 179 FPPTANCKLSSRETDILKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 238 Query: 226 AKAIRFGYI 234 KAI+ G + Sbjct: 239 YKAIKMGMV 247 >gi|310769028|gb|ADP21168.1| PhzR [Pseudomonas chlororaphis] Length = 241 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 67/189 (35%), Gaps = 18/189 (9%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 G+ P ++ Y D + H PI+W + + Sbjct: 58 YMYGNYPEDWVQRYQAANYAVIDPTVKHSKVSSAPILWSNELFRGCAD-----LWSEAKD 112 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFK 165 G+A P + G + S A + + A A LE Sbjct: 113 SHLCHGLAQPSFNAQGRVGVLSLARKNNPISLQEFEALKPVTRAFAAAAHEKISELESDV 172 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + + RE L+ DG TSEEI +G+ TVN + + K+ A NR+QA+ Sbjct: 173 RVFNTDVEFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAV 232 Query: 226 AKAIRFGYI 234 + A+ GYI Sbjct: 233 SYAVAMGYI 241 >gi|33326387|gb|AAQ08608.1| putative transcription regulator [Agrobacterium vitis] Length = 248 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 59/191 (30%), Gaps = 16/191 (8%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIES---SGQLSVRLEG 110 +G P + Y D + + P W + Q + Sbjct: 58 AGRWPEKWPQVYITKKFVLIDPAIRYLAQAQRPFRWSETLTAFSQDPHFKRMQRMMMDAQ 117 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE------LF 164 G FP+ + + L I+ E L Sbjct: 118 RFGLEEGYIFPIHGRGGLLANMTIGGRSVELTPIEIMLFDTVAKCAFWRLAEINGEDELL 177 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE L G+G TS E+++ L +S HTV+ Y+ KL+A NR Sbjct: 178 SMVQKVDVRLTRRELEILNYLGEGMTSNEMSKLLEISNHTVDWYVNELQDKLNAKNRQHM 237 Query: 225 IAKAIRFGYIC 235 +A A R G I Sbjct: 238 VAIAYRLGLIS 248 >gi|289649319|ref|ZP_06480662.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] Length = 247 Score = 118 bits (297), Expect = 5e-25, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 17/189 (8%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ +++Y D + H + P W+ + + ++ Sbjct: 60 SNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAAQGVETDDF-LKRSAKYQL 118 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLM--LANEVIIEAHGACYQVITDFLELFKKRSS--- 169 +G F + + + + +A +I L K R+ Sbjct: 119 SSGATFTLHDASGLFAALSLCNARQQKDFDQRIREKAADIQMSLIRFHDRLIKTRAPHEL 178 Query: 170 ----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 A L+ RET L+ G + EIAE +S TV ++ + + KL+ QA+ Sbjct: 179 FPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 238 Query: 226 AKAIRFGYI 234 KAI G + Sbjct: 239 YKAINMGMV 247 >gi|218672192|ref|ZP_03521861.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli GR56] Length = 233 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 1/153 (0%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 F +P+ W +L + +P AG+A P + F Sbjct: 79 PFGLRLRESAVPLAWHLNDAVNGQAFPAELRALMLHHAIP-AGVAMPTIAVDGRRLVFWF 137 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E L + E + + + + S L+ RE ++ G TS EI Sbjct: 138 CGERAALGQSEVNELAIIILHALDAYNTVRRNEESVHNALSARELEVVRWTAQGKTSIEI 197 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L LS HTVNAY+ +A KLD VNR Q +AK Sbjct: 198 GQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAK 230 >gi|255264823|ref|ZP_05344165.1| autoinducer-binding transcriptional regulator LuxR [Thalassiobium sp. R2A62] gi|255107158|gb|EET49832.1| autoinducer-binding transcriptional regulator LuxR [Thalassiobium sp. R2A62] Length = 258 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 72/192 (37%), Gaps = 19/192 (9%) Query: 59 LDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 G ++ Y D + P+ W+ + + +++ Sbjct: 49 YGCGTYDRSWVQRYVEQDYLRIDPVVVGCFQRFHPVDWKRLDWSS--KAARTFQAEAIEA 106 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSE-------FLMLANEVIIEAHGACYQVITDFLELF 164 + G + P+R + + +F++ + + + LE Sbjct: 107 GVGIQGYSIPIRGPNGQ--FALFSASHNCDDDWWANWTEANRRDLILIAHTFNQKGLEFE 164 Query: 165 KKR-SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K R AA+ L+ RE + GY+ ++A L +S HT+ AY+ SA KL A+N Sbjct: 165 KNRVPEAAKGLSPREVDAMTFLAMGYSRAQVANTLSISEHTLRAYIESARFKLGALNTTH 224 Query: 224 AIAKAIRFGYIC 235 A+A+A+ G I Sbjct: 225 AVARAMAHGLIV 236 >gi|307302498|ref|ZP_07582255.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307316172|ref|ZP_07595616.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|86278997|gb|ABC88593.1| N-acyl homoserine lactone receptor [Sinorhizobium meliloti] gi|306898012|gb|EFN28754.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306903168|gb|EFN33758.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 246 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 80/244 (32%), Gaps = 14/244 (5%) Query: 5 TLTGKKSSSLQELSPRLHLI---QNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLD 60 TL + + L+E+ R ++ + + F Y I P L L + Sbjct: 4 TLLVQFLALLEEMKTREEILPEFERLLDRCGFDFYGIV-RQPKPHENPLRLLLAGRWPEG 62 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQS--IQEETVIESSGQLSVRLEGG-LLPFAG 117 I D + W+ + + S+ +E F G Sbjct: 63 WPQIYIRKKYVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMVEARNHGLFDG 122 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAA 171 FPV G + + L+ + ++ LEL S Sbjct: 123 YIFPVHGRRGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVE 182 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +T RE L DG TS +I + L +S HTV+ Y+ KL A NR +A A R Sbjct: 183 VQMTRREMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVAIAFRL 242 Query: 232 GYIC 235 G I Sbjct: 243 GLIS 246 >gi|298486193|ref|ZP_07004256.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159200|gb|EFI00258.1| transcriptional regulator PsyR [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|306431677|emb|CBM41481.1| N-acyl homoserine lactone sensor/regulator [Pseudomonas savastanoi pv. savastanoi] Length = 247 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 67/190 (35%), Gaps = 17/190 (8%) Query: 61 SGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 S + P+ +++Y D + H + P W+ + + ++ Sbjct: 59 SSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDF-LKRSAKYQ 117 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLM--LANEVIIEAHGACYQVITDFLELFKKRSS-- 169 +G F + + + + +A +I L K R+ Sbjct: 118 LSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHE 177 Query: 170 -----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A L+ RET L+ G + EIAE +S TV ++ + + KL+ QA Sbjct: 178 LFPQPAQCKLSTRETGVLKWMAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQA 237 Query: 225 IAKAIRFGYI 234 + KAI G + Sbjct: 238 VYKAINMGMV 247 >gi|148557255|ref|YP_001264837.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148502445|gb|ABQ70699.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 301 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 45/182 (24%), Positives = 74/182 (40%), Gaps = 19/182 (10%) Query: 70 ETYGDDFLFHFNSGLLPI-----------IWQSIQEETVIESSGQLS-VRLEGGLLPFAG 117 + + D+ H P W +Q + Q+ + L G Sbjct: 119 DRWDRDWPRH--RAHDPYAHTAFLKMESTNWTVVQNNADLLDPAQVDCISYINDLGLNPG 176 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-----SSAAR 172 + P+ + H G++ + + + + G +I ++ + F R ++ Sbjct: 177 LTVPLFIPGHHYGFITAVGDGGLDGWDAAADRAGPTLAMIANYFDNFAIRRFGGPPKESQ 236 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L++RE CL + G T E+IA L LS TV YL KLDAVNR A+AKA+ G Sbjct: 237 SLSKRELECLTWSARGKTVEDIAVILDLSADTVRVYLKRVNQKLDAVNRSHAVAKAMCLG 296 Query: 233 YI 234 I Sbjct: 297 MI 298 >gi|316933442|ref|YP_004108424.1| autoinducer-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315601156|gb|ADU43691.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 239 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 11/181 (6%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 P Y D + S + W + + + + + Sbjct: 62 MSRWPAAWSRRYSSKGYLTEDPTIQRVRSSIEAFEWSELS---AVSIAARNIMEEAADFG 118 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 G P+ + + + L + K+ +A+ Sbjct: 119 LNHGFTVPLHTLDGEYAALSIAGDRCELPASFRGVVQLMATYAFAKAIG-QKRAINASPR 177 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L +G T EI++ LG+S H V+ K AVNR+Q I+ A+R G Sbjct: 178 LTIREADVLHWIAEGKTDWEISQILGVSEHLVDKVARQLKDKFGAVNRVQMISCAMRLGV 237 Query: 234 I 234 I Sbjct: 238 I 238 >gi|218677689|ref|ZP_03525586.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 240 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 56/180 (31%), Gaps = 2/180 (1%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLP 114 N+ + D + + P + E + L Sbjct: 60 NWPAEMVDYYDAHSLLIDSPVIRRMLRSTSPFNYDVEAINTNRGEGKKSTVIELFFRYGM 119 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 G FPV G + + + + + + +L Sbjct: 120 EKGAYFPVHDAAGGRGAMSISGPR-NFSMIEMAKLLFIATLIYDRLSQLTLNEKHKPIEF 178 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T E CL+L G EIA+ L L+ + VN ++GSA KL R QA+ A+R I Sbjct: 179 TPGELDCLRLTAGGRKGSEIAKLLDLTENVVNNHIGSAIKKLGCTTRTQAVVSALRLNII 238 >gi|167840217|ref|ZP_02466901.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia thailandensis MSMB43] Length = 230 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 40/180 (22%), Positives = 64/180 (35%), Gaps = 12/180 (6%) Query: 64 IPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 P+ +E Y D P W I + E + + Sbjct: 52 YPSEWVEHYTRSDYFAIDPVHRAAFQYSTPFSWNDIATSNLRE---RHLLMEAEDAGLDN 108 Query: 117 GIAFPVRLGFHKNGYVIFTS-EFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNL 174 GI+ P+ + V + A+ A+ Q F + + +L Sbjct: 109 GISIPLHQPLGRVLLVSLSGTAPTHDADAKWRNAYLLGMQFNLQFQSMRTCSPIPPSVHL 168 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE CL G +S IA L +S +TV+ ++ +A KL+ +R A KA R G I Sbjct: 169 TDREQMCLTWVARGKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228 >gi|28558836|ref|NP_788096.1| putative transcriptional regulator [Ruegeria sp. PR1b] gi|22726387|gb|AAN05182.1| RC109 [Ruegeria sp. PR1b] Length = 258 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 43/186 (23%), Positives = 65/186 (34%), Gaps = 15/186 (8%) Query: 63 DIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 + Y D + PI W +++ ++ E G+ Sbjct: 71 TYSQDWQDHYFEMSYQDKDPVIEMGQQSFCPIDWSILKDR-CGDTKKMFGEAREFGVSDR 129 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH-----GACYQVITDFLELFKKRSSA 170 G+ P+R + + TS+ + AH + + L L Sbjct: 130 -GVVIPMRGHLGEITLISMTSDLGGSEWVKYLSAHKSEFVNFAFCLHGSILSLSANTGGK 188 Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQ A G TS E A L LS T+ Y+G A KL+A + A+ KA+ Sbjct: 189 EEPRLTVREKQVLQWAAFGKTSWETAMILELSERTIETYIGKAVAKLEASTKAHAVCKAL 248 Query: 230 RFGYIC 235 G I Sbjct: 249 SLGLIS 254 >gi|330985566|gb|EGH83669.1| LuxR transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 247 Score = 118 bits (296), Expect = 6e-25, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 17/189 (8%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ +++Y D + H + P W+ + + R L Sbjct: 60 SNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDFLKRSAQYQLS 119 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLM--LANEVIIEAHGACYQVITDFLELFKKRSS--- 169 +G F + + + + +A +I L K R+ Sbjct: 120 -SGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHEL 178 Query: 170 ----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 A L+ RET L+ G + EIAE +S TV ++ + + KL+ QA+ Sbjct: 179 FPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 238 Query: 226 AKAIRFGYI 234 KAI G + Sbjct: 239 YKAINMGMV 247 >gi|239908483|ref|YP_002955225.1| LuxR family transcriptional regulator [Desulfovibrio magneticus RS-1] gi|239798350|dbj|BAH77339.1| LuxR family transcriptional regulator [Desulfovibrio magneticus RS-1] Length = 257 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 66/194 (34%), Gaps = 16/194 (8%) Query: 53 ELHNYDLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS 105 + +Y+L + + P ++TY D + + P W + + Sbjct: 65 AVESYELANINYPVEWLQTYKEKNFSGIDVIVKRNFTSFTPQYWDHTYKA---HKPAREF 121 Query: 106 VRLEGGLLPFAGIAFPVRLGFHK---NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE 162 + L G + R F F+ F VI + Sbjct: 122 ITLASDFNLIHGYTYGAR-PFGFCKQASLFSFSGNFKKYDPTVIAILQTIVPHLHLASSR 180 Query: 163 LFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + + R L+ RE L G +S +I+ L +S TVN ++ + KLD N Sbjct: 181 IIESRLIQHNRKLLSGREREVLSWLKHGKSSWDISTILQISECTVNYHIYNIIKKLDVQN 240 Query: 221 RIQAIAKAIRFGYI 234 R QA+A A G + Sbjct: 241 RPQAVAVATHLGIL 254 >gi|62822972|gb|AAY15207.1| transcriptional activator PhzR [Pseudomonas chlororaphis] Length = 241 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 67/189 (35%), Gaps = 18/189 (9%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 G+ P ++ Y D + H PI+W + + Sbjct: 58 YMYGNYPEDWVQRYQAANYAVIDPTVKHSKVSSAPILWSNELFRGCAD-----LWSEAKD 112 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFK 165 G+A P + G + S A + + A A LE Sbjct: 113 SHLCHGLAQPSFNAQGRVGVLSLARKNNPISLQEFEALKPVTRAFAAAAHEKISELESDV 172 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + + RE L+ DG TSEEI +G+ TVN + + K+ A NR+QA+ Sbjct: 173 RVFNTGVEFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAV 232 Query: 226 AKAIRFGYI 234 + A+ GYI Sbjct: 233 SYAVAMGYI 241 >gi|126730312|ref|ZP_01746123.1| autoinducer-binding transcriptional regulator LuxR [Sagittula stellata E-37] gi|126709045|gb|EBA08100.1| autoinducer-binding transcriptional regulator LuxR [Sagittula stellata E-37] Length = 226 Score = 118 bits (296), Expect = 7e-25, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 15/190 (7%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 G + Y D + P+ W+ + + +S+ G Sbjct: 38 YGCGTYDLEWVNHYIEKGYLRIDPVIQGCYQRFHPVNWKRLDWSS--KSARAFLEDAIGH 95 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFKK 166 + G + P+R + + E+ + + + LE Sbjct: 96 GIGNQGYSIPIRGPNGQFALFTMSHSCNDDEWEAFTISNRRDLILVAHSFNSKALEFEPG 155 Query: 167 RSS-AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ A+ L+ RE + L GY+ + A+ L +S HT+ Y+ SA KL A+N A+ Sbjct: 156 RTPEPAQPLSPREIEAMTLLAIGYSRAQAADTLSISEHTLRVYVESARHKLGAMNTTHAV 215 Query: 226 AKAIRFGYIC 235 A+A+ G I Sbjct: 216 AQALSRGVIV 225 >gi|150377825|ref|YP_001314420.1| response regulator receiver protein [Sinorhizobium medicae WSM419] gi|150032372|gb|ABR64487.1| response regulator receiver protein [Sinorhizobium medicae WSM419] Length = 243 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 52/247 (21%), Positives = 90/247 (36%), Gaps = 25/247 (10%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 +S + T + + +L L + + + + S +Y Sbjct: 7 LSASLRTLQAAKHRADLQSALGELCEHYGVSHMTILVVCSGG----------RSGSYPYC 56 Query: 61 SGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 P E Y D + G LP+ W S+ + E + +L + Sbjct: 57 CTTYPERWTEKYVGKCFFEIDPVIDVIRWGFLPVDWSSLDRRS--EQAHRLFKEARLYDI 114 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK------KR 167 G+ P+R + + TS + + Q+++ +L + Sbjct: 115 GPHGLTIPIRGPKGERCLLSVTSNLPGRHWSRLRASSIHELQILSHYLHETVLSASGLRG 174 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + RNL+ RE+ C QL G S++IA LG+S + V YL SA +KL A QA+A+ Sbjct: 175 TDRYRNLSRRESQCFQLLATGRISKQIAADLGISENAVKLYLRSARMKLGAATSHQAVAR 234 Query: 228 AIRFGYI 234 A I Sbjct: 235 ASFLELI 241 >gi|212638021|ref|YP_002314541.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212559501|gb|ACJ32556.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 208 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 54/112 (48%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETSCL 182 Y++ TS+ +AN + HG +V + +K S LT RE L Sbjct: 96 AGAVSYMLKTSKASEIANAIRATFHGQSVFEPEVTGKMMNSMRKPSLPHEQLTSREMEVL 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T++EIAE+L +S+ TV ++ + KLD +R QA+ A + G + Sbjct: 156 LLIAQGKTNQEIAEELFISLKTVKVHVSNILAKLDVQDRTQAVIYAFKHGLV 207 >gi|118917992|dbj|BAF40420.1| PsyR [Pseudomonas syringae pv. tabaci] Length = 247 Score = 118 bits (295), Expect = 7e-25, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 65/189 (34%), Gaps = 17/189 (8%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ +++Y D + H + P W+ + + ++ Sbjct: 60 SNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDF-LKRSAKYQL 118 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLM--LANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 +G F + + + + +A +I L K R+ Sbjct: 119 SSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHEL 178 Query: 173 -------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RET L+ G + EIAE +S TV ++ + + KL+ QA+ Sbjct: 179 FPQPTQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 238 Query: 226 AKAIRFGYI 234 KAI G + Sbjct: 239 YKAINMGMV 247 >gi|222055510|ref|YP_002537872.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32] gi|221564799|gb|ACM20771.1| transcriptional regulator, LuxR family [Geobacter sp. FRC-32] Length = 248 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 71/189 (37%), Gaps = 11/189 (5%) Query: 54 LHNYDLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV 106 + YD+ + P + TY D S W+ ++ + + + Sbjct: 60 IQTYDVMNISYPEEWLITYKRKNFCQVDPIAKENFSNFELQFWEDTYKK---WNPPKEFI 116 Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-LFK 165 + GIA VR G + + L + T F L K Sbjct: 117 SAARDFNLYNGIACGVRNLKSTEGSLFSVAGKLENHPREKFIIENLTPHLHTAFTTYLSK 176 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ L++RE L G +S +I+ L +SV TV ++ + VKL+AV+R A+ Sbjct: 177 TKAPVNFELSKREIEVLNWVKKGKSSWDISVILAISVRTVKFHVENIMVKLNAVSRTHAV 236 Query: 226 AKAIRFGYI 234 A A+ G I Sbjct: 237 AIALSAGVI 245 >gi|190890862|ref|YP_001977404.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190696141|gb|ACE90226.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 240 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 56/180 (31%), Gaps = 2/180 (1%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLP 114 N+ + D + + P + E + L Sbjct: 60 NWPAEMVDYYDSHNLMVDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGM 119 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 G FPV G + + E+ A + +L Sbjct: 120 EKGAYFPVHDAAGGRGAMSISGSRNFTMLEMAKILFIATL-IYDRLSQLTLNEKHKPIAF 178 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T E CL+L G S EIA+ L LS + VN ++GS KL R QA+ A+R I Sbjct: 179 TSSELDCLRLTAGGRKSSEIAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238 >gi|293393463|ref|ZP_06637774.1| transcriptional activator protein LasR [Serratia odorifera DSM 4582] gi|291424064|gb|EFE97282.1| transcriptional activator protein LasR [Serratia odorifera DSM 4582] Length = 237 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 86/241 (35%), Gaps = 15/241 (6%) Query: 4 NTLTGKKSSSLQELSPRLH-LIQNRIKARNF-ALYTINSALDFPRRQQLICELHNYDLDS 61 N + + +S + +L ++ R +A F + Q ++ L N+ Sbjct: 2 NEIYNRYASFRIDNFSQLDEVLAERCQAIGFDGYLLGVTGHGRDINQAVV--LTNHPPAW 59 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + L D + H GL P+ WQ I + + G++FP Sbjct: 60 RETYTRLGYINTDPTVAHCLGGLFPLEWQ----ACPITAETAPFWQEASYYGLAHGVSFP 115 Query: 122 VRLGFHKNGYVIFT--SEFLMLANEVIIEAHGACYQVITDFLE-----LFKKRSSAARNL 174 + + G + + + E++ + G Y + L L +K A L Sbjct: 116 LHGVQGEQGILSLSLGRQRQRDYRELMQQRWGELYILRDILLHHCIRLLDEKNKLTATVL 175 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE + G T+ EI+ L S VN + + K + +R AI KAI G + Sbjct: 176 SPREIEVCKWFTIGKTTWEISRILNCSEANVNFHFKNIRRKFNVSSRGAAIIKAIASGSL 235 Query: 235 C 235 Sbjct: 236 T 236 >gi|330958109|gb|EGH58369.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 254 Score = 118 bits (295), Expect = 8e-25, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 72/196 (36%), Gaps = 12/196 (6%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLS 105 + L N D + D + + P +W + T I + Sbjct: 57 LLSLRNTPADWHSLWCSQGYYQIDPVQHLAVASVSPFVWSYQPKAETVLQTFITDLHKPV 116 Query: 106 VRLEGGLLPFAGIAFPVRLGFHKN----GYVIFTSEFLMLANEVIIEAHGACYQVITDFL 161 VR G+ P+ + G S+ + + G + Sbjct: 117 VRYLHDSHMTCGVTAPIHMPKGGFATLTGLRSDNSDIALEDARQSLAEFGLLAHAFQEVA 176 Query: 162 ELF---KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 K RS A LT RE CL + +G T+ EIA++L SV TV +L SA KL A Sbjct: 177 YPLFDEKMRSCTAIKLTRRERECLSWSAEGLTAREIADQLNRSVATVTLHLNSAMQKLGA 236 Query: 219 VNRIQAIAKAIRFGYI 234 NR+QA+ +A+ + + Sbjct: 237 KNRVQAVVRAVHYRLL 252 >gi|257487581|ref|ZP_05641622.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331012605|gb|EGH92661.1| LuxR transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 247 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 65/189 (34%), Gaps = 17/189 (8%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ +++Y D + H + P W+ + + ++ Sbjct: 60 SNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDF-LKRSAKYQL 118 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLM--LANEVIIEAHGACYQVITDFLELFKKRSS--- 169 +G F + + + + +A +I L K R+ Sbjct: 119 SSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHEL 178 Query: 170 ----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 A L+ RET L+ G + EIAE +S TV ++ + + KL QA+ Sbjct: 179 FPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLKVRTAKQAV 238 Query: 226 AKAIRFGYI 234 KAI G + Sbjct: 239 YKAINMGMV 247 >gi|167590019|ref|ZP_02382407.1| transcriptional regulator, LuxR family protein [Burkholderia ubonensis Bu] Length = 233 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 73/218 (33%), Gaps = 11/218 (5%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 I ++ F +P + I L N+ + D + H Sbjct: 21 IAAAVREVGFEYSAYYLHTPWPLSRPKIYMLTNFPEAWQQRYHAARYVDVDPVIRHARQS 80 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT------SE 137 PIIW + V E + L + G + G + + Sbjct: 81 YAPIIWS----DAVFEETPHL-WQEAQAHGLRYGYSLAAVSNCGVAGMMSMARSHGPLTR 135 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + E+ + + L K A LT RE L+ DG T+ EI+ Sbjct: 136 RELQQQELKMRWLVNAAHLAITRAVLPKLSPDNAIELTAREVEVLKWVADGKTASEISMI 195 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + +SV+TVN ++ +A KL N A+A+A G + Sbjct: 196 MLISVYTVNFHVKNAVTKLKTSNTTAAVARAAMLGLLV 233 >gi|238026711|ref|YP_002910942.1| acylhomoserine lactone dependent transcriptional activator [Burkholderia glumae BGR1] gi|237875905|gb|ACR28238.1| Acylhomoserine lactone dependent transcriptional activator [Burkholderia glumae BGR1] Length = 241 Score = 118 bits (295), Expect = 9e-25, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 60/189 (31%), Gaps = 6/189 (3%) Query: 50 LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 L C L +Y + D + H + P W + + + L Sbjct: 48 LGCFLSSYPIRLQQEYRRRALHRVDPVVLHAIQSVAPFSWAEAFRQQRVPDPSEFDA-LR 106 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELF 164 G F V + G + F + EF V A + Sbjct: 107 REFGLHDGYVFTVHDPYQYVGMLSFFNRGGRPEFRAEIERVKGAMQLALVLFHSRINAKP 166 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LT RE + L+ A G + EIA+ G+ TV ++ + KLD QA Sbjct: 167 PDSRHRVESLTLRERTVLKWAAMGKSYSEIADICGIRERTVKYHMANVVQKLDVSTAKQA 226 Query: 225 IAKAIRFGY 233 + A R G Sbjct: 227 VIVASRLGL 235 >gi|209863456|gb|ACI88828.1| PhzR [Pseudomonas sp. G5(2008b)] Length = 241 Score = 117 bits (294), Expect = 9e-25, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 67/189 (35%), Gaps = 18/189 (9%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 G+ P ++ Y D + H PI+W + + Sbjct: 58 YMYGNYPEDWVQRYQAANYAVIDPTVKHSKVSSAPILWSNELFRGCAD-----LWSEAKD 112 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFK 165 G+A P + G + S A + + A A LE Sbjct: 113 SHLCHGLAQPSFNAQGRVGVLSLARKNNPISLQEFEALKPVTRAFAAAAHEKISELESDV 172 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + + RE L+ DG TSEEI +G+ TVN + + K+ A NR+QA+ Sbjct: 173 RVFNTGVAFSGRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQAV 232 Query: 226 AKAIRFGYI 234 + A+ GYI Sbjct: 233 SYAVAMGYI 241 >gi|150398334|ref|YP_001328801.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150029849|gb|ABR61966.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 246 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 51/244 (20%), Positives = 80/244 (32%), Gaps = 14/244 (5%) Query: 5 TLTGKKSSSLQELSPRLHLI---QNRIKARNFALYTINSALDFPRRQQLICEL-HNYDLD 60 TL + + L+E+ R ++ + + F Y + P L L + Sbjct: 4 TLLVQFLALLEEMKTREEILPEFERLLDRCGFDFYGVV-RQPKPHENPLRLLLAGRWPEG 62 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQS--IQEETVIESSGQLSVRLEGG-LLPFAG 117 I D + W+ + + S+ +E F G Sbjct: 63 WPQIYIRKKYVVIDPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMIEARNHGLFDG 122 Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAA 171 FPV G + + L+ + ++ LEL S Sbjct: 123 YIFPVHGRRGLMGNLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVE 182 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +T RE L DG TS +I + L +S HTV+ Y+ KL A NR +A A R Sbjct: 183 VQMTRREMEALHYLADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVALAFRL 242 Query: 232 GYIC 235 G I Sbjct: 243 GLIS 246 >gi|222109223|ref|YP_002551488.1| two-component transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221738497|gb|ACM39362.1| two-component transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 240 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 69/208 (33%), Gaps = 1/208 (0%) Query: 28 IKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPI 87 I R F Y + + + + L D S P Sbjct: 30 IAKRGFHSYIYTGLPAVGDDVKHYVVKNAWPPGWTEQFEGLNYFADDPVSRWSLSQSKPF 89 Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM-LANEVI 146 W++ +EET + + + GI FP+ + ++ LA E I Sbjct: 90 TWKTAREETKATARTKEIQQEADRYRLCDGIVFPMFDPNSWQSVISLATDDKGGLAKENI 149 Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + + L ++ A LT+RE LQ G T EI L ++ +V Sbjct: 150 GDLYLLSSYCAMTANNLLRRAEQADHRLTDREKEILQWVSRGKTDWEIGTILRMTEGSVT 209 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L NR Q +++AIR G I Sbjct: 210 QRLARIRDTLGVKNRPQTVSQAIRLGLI 237 >gi|45259344|emb|CAF32980.1| uR protein [Pseudomonas putida] Length = 238 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 58/186 (31%), Gaps = 14/186 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 D P+ Y D + H + ++W + S Sbjct: 55 YSDYPDAWRTRYDAESYAAVDPVVQHCLNANRALLW---DRDNYRRPSESEFFEEAAAHG 111 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSS 169 G+A P+ + G + + ++ D+ + S Sbjct: 112 LQQGLALPLHGPRGEAGMLCLKPSESGPQATATMIESLPTATLLRDYAMEGMLKARIECS 171 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT RE LQ + G T+ EI+ L + ++ + + K +R A+ KAI Sbjct: 172 TPVHLTSREKEVLQWSAAGKTTWEISMILSCTTSAIDFHFKNIRRKFQVSSRQMAVLKAI 231 Query: 230 RFGYIC 235 + I Sbjct: 232 QQKSIT 237 >gi|197344641|gb|ACH69671.1| LuxR family transcriptional regulator [uncultured proteobacterium] Length = 277 Score = 117 bits (294), Expect = 1e-24, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 74/209 (35%), Gaps = 8/209 (3%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 + R+FA + L PRR + LH+Y + + + L D H + L+ Sbjct: 32 EALGFRHFACCSHVDPLKPPRRAVM---LHSYPKEWAQLFSELELFDIDPVFLHASRSLV 88 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR---LGFHKNGYVIFTSEFLMLA 142 P W + + Q G G P+ + L Sbjct: 89 PFFWDTEAFNDELSPPQQELFNEAGRYGLTRGYTVPIHSVDAPRDFRASCSVVPDSESLE 148 Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + + + +++ + L+ RE CL+LA G + + LGL Sbjct: 149 PAAYQAVQLMAFYLYDTASKDAQQKDPPPVQQPLSRRERQCLELAAQGKSDWVSSRILGL 208 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 S TV+ ++ +A +L R+QA+ A+ Sbjct: 209 SERTVHNHVENAKRRLQVATRMQAVMHAL 237 >gi|83747411|ref|ZP_00944450.1| SolR [Ralstonia solanacearum UW551] gi|207744773|ref|YP_002261165.1| transcriptional activator protein solr [Ralstonia solanacearum IPO1609] gi|83725868|gb|EAP73007.1| SolR [Ralstonia solanacearum UW551] gi|206596183|emb|CAQ63110.1| transcriptional activator protein solr [Ralstonia solanacearum IPO1609] Length = 236 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 82/235 (34%), Gaps = 20/235 (8%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + ++L + I ++ F + + P + + Y Sbjct: 13 RTAEDERQLFREIASIARQL---GFDYCCYGARMPLPVSKPAVAIFDTYPAGWMQHYQAN 69 Query: 69 IETYGDDFLFHFNSGLLPIIW--QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + S I+W E + S + + GL G+A Sbjct: 70 GFLDIDPTVRAGASSGDMIVWPVSIRDEAARLWSDAR-----DAGLNV--GVARSSWTAH 122 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTERET 179 G + L + A + +++ FL S A LT RE Sbjct: 123 GAFGLLTLARHADPLTAAELGRLSIATHWLANLAHTLMSPFLVPKLVPESNAV-LTARER 181 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G I Sbjct: 182 EVLCWTGEGKTAYEIGQILHISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236 >gi|254485722|ref|ZP_05098927.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. GAI101] gi|214042591|gb|EEB83229.1| autoinducer-binding transcriptional regulator LuxR [Roseobacter sp. GAI101] Length = 239 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 85/240 (35%), Gaps = 29/240 (12%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +K+ +L L ++ + + + ++SA D G Sbjct: 15 EKTDTLDGLQTATEALRTFLGVAHIVYHWVDSAGDQ--------------YGCGTYSPEW 60 Query: 69 IETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 Y D + P+ W+ + + +++ L + G P Sbjct: 61 RSRYLDQNYLRVDPVVSGCFQRFHPVDWKRLDWSS--KAARALLTEAIDHGVGNQGFTVP 118 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-----LELFKKRSSA-ARNLT 175 +R + A + +A+ +I + LE R+ A+ L+ Sbjct: 119 IRGPNGQFALFTVNDNCTDDAWQAFTQANRRDLILIAHYFNQKALEFEPGRTPEVAQALS 178 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE + L GY ++A+ L +S HT+ Y+ SA KL A+N A+A+A+ G I Sbjct: 179 PREIDAMTLLAIGYNRAQVADSLSISEHTLRVYIESARFKLGAMNTTHAVARALSRGLIV 238 >gi|13625780|gb|AAK35156.1|AF296284_2 transcriptional activator BviR [Burkholderia cepacia] gi|116878313|gb|ABK32010.1| transcriptional regulator [Burkholderia vietnamiensis] gi|116878322|gb|ABK32016.1| transcriptional regulator [Burkholderia vietnamiensis] Length = 237 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 79/239 (33%), Gaps = 32/239 (13%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S ++ ++A F + + P + + + P +E Sbjct: 15 AKSEADVFLEFSA---DVRALGFDHCSFGLRIPLPISK-------PQFMLQSNYPQTWVE 64 Query: 71 TYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 Y D + H S + P+IW++ + + G G P Sbjct: 65 RYVSQNYFAVDPTVRHGLSRMSPLIWRADSQTQCV-----QFWEEAGQHGLRHGWCMPSV 119 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE--------AHGACYQVITDFLELFKKRSSAARNLT 175 G + + + E A+ A Y + L+ + LT Sbjct: 120 SRTGAIGLITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHLLQRLVPEYT--VELT 177 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQ + G T EI + + + TV +L +A KL+A N+ +A KA G + Sbjct: 178 VREREALQWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNAANKTEAAVKATMLGLL 236 >gi|163758741|ref|ZP_02165828.1| putative AHL-dependent transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284031|gb|EDQ34315.1| putative AHL-dependent transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 239 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 50/185 (27%), Positives = 71/185 (38%), Gaps = 15/185 (8%) Query: 63 DIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 + Y D L LP W ++ + L GL P Sbjct: 57 TYSAEWVSRYLQRNYVDIDPVLKEGVQRQLPFDWSELEMSAAVLPL--FEDALAHGLGP- 113 Query: 116 AGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 +G + P+ + + S + L N A + + ++ + Sbjct: 114 SGYSIPIIDKNFRRALLSINSFETGEAWSDLVNRHKAAWAEAAFLIHDMAMKEIHGGNDQ 173 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +L+ RE CL LA G ++IA LGLS HTV YL SA KL +VN QAIA+AIR Sbjct: 174 ALHLSPREIECLTLAARGKDHKDIALILGLSGHTVQGYLKSARHKLGSVNIPQAIAEAIR 233 Query: 231 FGYIC 235 I Sbjct: 234 SRIIS 238 >gi|254501452|ref|ZP_05113603.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] gi|222437523|gb|EEE44202.1| Sigma-70, region 4 family [Labrenzia alexandrii DFL-11] Length = 236 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 51/228 (22%), Positives = 92/228 (40%), Gaps = 10/228 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRR--QQLICELHNYDLDSGDIPN 66 + S L ++++ ++ R A + + + L P R L+ D + I + Sbjct: 15 RAISEANAAHHVLDILESNLR-RMGATHILITGLPMPNRPIDNLVQRFRWPDQRNDGIES 73 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + D L IW +E S ++ EG + + PV + Sbjct: 74 TSLSA-NDSALMLGLGSNRARIWTI--TAGDMEHSDLMASAGEGSQI----VVVPVTELY 126 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +V + L ++ + I+ EL L+ RE L+L Sbjct: 127 PFQAFVFASGPALQVSKYDLSNLEALSAAAISRLRELGVVSGQRPGALSTRERKVLELTA 186 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EIA+ L +S TV+A+L +A+VKL+A N+ + +A+R+G I Sbjct: 187 YGKTAGEIADVLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 234 >gi|84684996|ref|ZP_01012895.1| autoinducer-binding transcriptional regulator LuxR [Maritimibacter alkaliphilus HTCC2654] gi|84666728|gb|EAQ13199.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2654] Length = 225 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 74/188 (39%), Gaps = 14/188 (7%) Query: 59 LDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 +G ++ ++ Y D +F P W+ + T + L L+ G Sbjct: 38 FGAGTYSSVWVDRYLEMDYLRMDPVIFGCFQRFTPANWKDLDWTTKA-ARAMLDDALKHG 96 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA-----CYQVITDFLELFKK 166 L G + P+ + + I+ +G ++ LE Sbjct: 97 LGN-QGYSIPLHGPQGQFALFTLNHQAEDDDWAAFIDINGRDLIVLAHEFNRRALEFEGA 155 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 A+ +L+ RE + ++ G + + A +LG+S HT+ Y+ SA KL A+N A+A Sbjct: 156 EGIASPSLSPRELAAIRCLARGLSRAQAAAELGISEHTLRVYIESARHKLGALNTTHAVA 215 Query: 227 KAIRFGYI 234 +A+ G I Sbjct: 216 RALSTGII 223 >gi|271965882|ref|YP_003340078.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509057|gb|ACZ87335.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 219 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK--KRSSAARNL 174 L +G+++ + L + + A GA Q++ + + + + A L Sbjct: 99 LRAGASGFLLKDAPPAQLLHGIRTVATGAALLAPEVTRQLVGRYAARIRPAQATPAETAL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L DG ++ EIA L +S TV Y+ KLD +R+QA+ A R G + Sbjct: 159 TPRELEVLRLIADGLSNSEIAATLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRRGLV 218 Query: 235 C 235 Sbjct: 219 T 219 >gi|50084356|ref|YP_045866.1| putative transcriptional regulator [Acinetobacter sp. ADP1] gi|49530332|emb|CAG68044.1| putative transcriptional regulator, luxR family [Acinetobacter sp. ADP1] Length = 246 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 81/231 (35%), Gaps = 11/231 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +++S ++++ + I + +I ++ N+ D +I Sbjct: 20 RQASKIEDIFDVVVEFAQNIDFDRLIICSIAPHGKEELIDEVFFVYGNW-TDRTNIEERN 78 Query: 69 IETYGDDFLFHFNSGLLPIIWQS-IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 H P W + E+ + E G +G+ P+ Sbjct: 79 KYLRNCPITRHIFDYDEPFFWTKTFNKNNSKETYRVIKNISERG--EESGVQVPIFGRTG 136 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS----SAARNLTERETSCLQ 183 G + F + L + C +T F E+ KRS LT+RE L+ Sbjct: 137 LEGAISFAGKLSDLGADFRFILQSVC---VTAFREIQSKRSLNLLRENSVLTQREKEILK 193 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G EIAE L +S TV +L S KL+ + QAIA A+ G I Sbjct: 194 WTAVGRKQSEIAEILKISERTVENHLRSIRKKLEVKSTGQAIASALLKGEI 244 >gi|229541561|ref|ZP_04430621.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229325981|gb|EEN91656.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 227 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 55/130 (42%), Gaps = 19/130 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRS------------ 168 L GY++ + L V + A G Y ++ + +E F+K S Sbjct: 95 LKSGATGYLLKEMDSDALIEAVKVVAEGGSYLHPKITHNLVEEFRKLSNRYTPGGTYQQP 154 Query: 169 ----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE LQL DG ++ I + L +S TV ++ + KL +R QA Sbjct: 155 PAVVPPLHLLTPRECEVLQLLADGKSNRAIGDALYISEKTVKNHVSNILQKLKVKDRTQA 214 Query: 225 IAKAIRFGYI 234 + AI+ G++ Sbjct: 215 VVTAIKNGWV 224 >gi|159044364|ref|YP_001533158.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912124|gb|ABV93557.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 265 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 9/194 (4%) Query: 50 LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSG 102 ++ + + + P ++ Y DD L+ + P +W + E T + Sbjct: 64 IVSATPRFHIIAHGFPREWVDIYVDDHLYEIDPIPALAQRRAVPFLWSEVAELTRLAEEQ 123 Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--FTSEFLMLANEVIIEAHGACYQVITDF 160 + G+A V ++GYV F + + E + Sbjct: 124 AAFLERSMPARVGDGVAIQVFGPNMRHGYVGMGFGDRPRDVTAPQLAEYQLVSQLMHLRA 183 Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 L ++R+ + L+ RET L G + IA+ LGLS HTV+ + KL+ + Sbjct: 184 CRLIEERNRSEIALSARETEVLGWMARGKSKTVIADILGLSPHTVDTLVRRIFRKLEVFD 243 Query: 221 RIQAIAKAIRFGYI 234 R AI KAI G + Sbjct: 244 RTAAILKAINLGLV 257 >gi|167837236|ref|ZP_02464119.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 237 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 79/239 (33%), Gaps = 12/239 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 L S+ E I+ A +F + +P + I N+ Sbjct: 5 AEDLLAGLDSARSE-EEAFRSIETATTALDFEYCAYGLRVPWPLSRPRIETRSNFPEQWK 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D L H P++ + +S G A Sbjct: 64 RRYVEAGFLDIDPILAHGRRSQQPVVLSE-----TLFASSHQMWVEAQSFGLRFGWAQSS 118 Query: 123 RLGFHKNGYVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 + G + +E + A E + + L K + R LTE Sbjct: 119 FDAYGGMGMLALVRSRGPVTEAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTE 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A G + Sbjct: 179 REVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLLS 237 >gi|148560233|ref|YP_001258220.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840] gi|148371490|gb|ABQ61469.1| transcriptional regulator, LuxR autoinducer regulated family [Brucella ovis ATCC 25840] Length = 235 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 89/241 (36%), Gaps = 31/241 (12%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L +++N F + ++ L L + G P+ Sbjct: 11 QSADSADQLF---EIVKNYAHDLGFEYVSYVMSIPS-----LNGSLKW--VRFGAFPDGW 60 Query: 69 IETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + Y D L + + P+IW +S GI+ P Sbjct: 61 EQRYLAQNYAEIDPLLRRGVNSIDPLIWS-----QNFFASAPQIWADAVKYGLKVGISQP 115 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RN 173 G + F L I Q++T+ L L +++ A + Sbjct: 116 CWAAQGVFGLLSFVRSGPALTPGEISMLR-RQLQMVTNLLHLSMYERVDVPAISCIGDVS 174 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ +G T+E I L +S TVN ++ + KL AVN+++A+AKA FG Sbjct: 175 LTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVKAVAKARTFGL 234 Query: 234 I 234 + Sbjct: 235 L 235 >gi|218663535|ref|ZP_03519465.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli IE4771] Length = 240 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 55/180 (30%), Gaps = 2/180 (1%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLP 114 N+ + D + + P + + L Sbjct: 60 NWPAEMVDYYDAHNLMVDSPVIRRMLRSTSPFNYDVEAINTDRGGGKKSTVIDLFRRYGM 119 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 G FP+ G + + E+ A + +L Sbjct: 120 EKGAYFPLHDAAGGRGAMSISGSRNFSMIEMAKILFIATL-IYDRLSQLTLNEKHKPIAF 178 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T E CL+L G S EIA+ L LS + VN ++GS KL R QA+ A+R I Sbjct: 179 TSSELDCLRLTAGGRKSSEIAKLLHLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238 >gi|167566223|ref|ZP_02359139.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia oklahomensis EO147] gi|167573334|ref|ZP_02366208.1| autoinducer-binding transcriptional regulator BmpR [Burkholderia oklahomensis C6786] Length = 230 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 63/180 (35%), Gaps = 12/180 (6%) Query: 64 IPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 P+ +E Y D P W + + E + + Sbjct: 52 YPSEWVEHYTRNDYFDIDPIPRAAFRYSTPFSWSDVATSNLRE---RHLLMEAEDAGLDN 108 Query: 117 GIAFPVRLGFHKNGYVIFTS-EFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNL 174 GI+ P+ + + A A+ Q F + R + +L Sbjct: 109 GISIPLHQPLGHVLLINLSGTAPTHDAEAKWRNAYLLGMQFHLQFQSMRTSRPIPPSVHL 168 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE CL G +S IA L +S +TV+ ++ +A KL+ +R A KA R G I Sbjct: 169 TDREQICLTWVARGKSSWVIANMLDISKYTVDFHIENAMEKLNTRSRTFAAVKATRQGLI 228 >gi|315506070|ref|YP_004084957.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412689|gb|ADU10806.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 603 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKR--SSAARNL 174 L +G+++ + L + + A GA Q++ + + + A L Sbjct: 483 LRAGASGFLLKDAPPAQLLHGIRTVASGAALLAPEVTRQLVGRYAARIRPAEGTPADVGL 542 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L DG ++ EIA +L +S TV Y+ KLD +R+QA+ A R G + Sbjct: 543 TPRELEVLRLIADGLSNSEIAARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRTGLV 602 Query: 235 C 235 Sbjct: 603 T 603 >gi|163744256|ref|ZP_02151616.1| Transcriptional activator protein RaiR, putative [Oceanibulbus indolifex HEL-45] gi|161381074|gb|EDQ05483.1| Transcriptional activator protein RaiR, putative [Oceanibulbus indolifex HEL-45] Length = 239 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 72/193 (37%), Gaps = 21/193 (10%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 G + + Y D + P+ W+ + + ++ + Sbjct: 51 YGCGTYGALWSDRYHEHNYLRIDPVVSGCYRRFEPVDWKDLDWTSR--AARKFRRDASDH 108 Query: 112 LLPFAGIAFPVRLGFHKNGY---------VIFTSEFLMLANEVIIEAHGACYQVITDFLE 162 + G + PVR + +++S ++I AH + Sbjct: 109 GVGNQGFSVPVRGPHGQFALFTTNHSCTDALWSSFTARHRRDLIWAAHCFNEKA---LAL 165 Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +R A + L+ RE + L GY ++A++L +S HT+ AY+ SA KL A N Sbjct: 166 APNRRPGAVQALSPREVDAMTLLAVGYNRAQVAQRLSISEHTLRAYVESARFKLGASNTT 225 Query: 223 QAIAKAIRFGYIC 235 A+A+A+ G I Sbjct: 226 HAVARALSRGLIV 238 >gi|323139012|ref|ZP_08074072.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242] gi|322395766|gb|EFX98307.1| Autoinducer-binding domain protein [Methylocystis sp. ATCC 49242] Length = 267 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 73/196 (37%), Gaps = 27/196 (13%) Query: 58 DLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 L S + Y D + G+LPI W I I + + Sbjct: 65 PLLSMTYSVEWQKHYAQSGYVDIDPIVRSGLGGILPIDWSEIDRGDPI--IRKFFGEAQE 122 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + G++ P+R + F + +NE +E +I D + + +A Sbjct: 123 LDVGANGMSIPIRGRHGEFAL------FTVTSNENALEWRAIRRDLIRDLMVVAWNFHAA 176 Query: 171 A------------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 A +L RE SCL+ G T EEI L +S HTV +L SA +L+ Sbjct: 177 ALRSCGELAEPGDVHLPLREASCLRWKALGKTDEEIGRILVISPHTVRFHLESARARLNT 236 Query: 219 VNRIQAIAKAIRFGYI 234 N +AKA+ G I Sbjct: 237 ANTTHTVAKALALGLI 252 >gi|146275775|ref|YP_001165935.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] gi|145322466|gb|ABP64409.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] Length = 255 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 11/172 (6%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIES---SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 P + T + + E + A I PV L F + G Sbjct: 81 PLTSACRFESEPFWVNANGFHTRQPNHYLTAIDLTNFETRAMTRAAIVVPVHLPFGQIGA 140 Query: 132 VIFTSEFLMLA--NEVIIE---AHGACYQ-VITDFLELFK--KRSSAARNLTERETSCLQ 183 V F L +++ +E A G + I ++ + L++RE CL+ Sbjct: 141 VSFNPLDPDLTELDDIFLENGDAFGIYGRTFIASYVHAMGSVQALPPGSRLSKREVECLR 200 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 A G T EI+ +G S TV ++ +A++KL+AVNR Q + KA + GYI Sbjct: 201 WAAIGKTDLEISMIMGRSRATVRFHIHNASMKLNAVNRSQTVFKAAQLGYIS 252 >gi|71733308|ref|YP_273861.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. phaseolicola 1448A] gi|71553861|gb|AAZ33072.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. phaseolicola 1448A] gi|320327729|gb|EFW83737.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. glycinea str. race 4] Length = 233 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 66/189 (34%), Gaps = 17/189 (8%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ +++Y D + H + P W+ + + ++ Sbjct: 46 SNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDF-LKRSAKYQL 104 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLM--LANEVIIEAHGACYQVITDFLELFKKRSS--- 169 +G F + + + + +A +I L K R+ Sbjct: 105 SSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHEL 164 Query: 170 ----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 A L+ RET L+ G + EIAE +S TV ++ + + KL+ QA+ Sbjct: 165 FPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 224 Query: 226 AKAIRFGYI 234 KAI G + Sbjct: 225 YKAINIGMV 233 >gi|167581251|ref|ZP_02374125.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] gi|167619336|ref|ZP_02387967.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] gi|257138549|ref|ZP_05586811.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] Length = 237 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 82/239 (34%), Gaps = 12/239 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 L S+ E I+ A +F + +P + I N+ Sbjct: 5 AEDLLAGLDSARSE-DEAFRSIETAATALDFEYCAYGLRVPWPLSRPRIETRSNFPEQWK 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D L H P+ + ET+ SS Q+ V + G A Sbjct: 64 RRYVEAGFLDVDPILAHGRRSQQPV----VLNETLFASSHQMWVEAQS-FGLRFGWAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTE 176 + G + + + + ++ + + R LTE Sbjct: 119 FDAYGGMGMLALVRSREPVTHAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTE 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A G + Sbjct: 179 REVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLLS 237 >gi|307315521|ref|ZP_07595072.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|306898775|gb|EFN29433.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 243 Score = 116 bits (292), Expect = 2e-24, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 85/241 (35%), Gaps = 29/241 (12%) Query: 9 KKSSSLQELSPRLHLI--QNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + + +L P L + + + F + Y P Sbjct: 15 QSAKHRGDLHPALDELCARYGLSHMTFLVVCSGGRSGL------------YPDYCTTYPG 62 Query: 67 ILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 E Y D + G LP+ W S+ + + +L + G+ Sbjct: 63 KWTEIYVDKRYFDIDPVIDVIRWGFLPVDWSSLDRRSA--QAYRLFKEARSYDIGPHGLT 120 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------N 173 P+R + +S + + Q+++ +L +S R Sbjct: 121 IPIRGSKGERCLFSVSSNLPKRDWSRLRASSIHELQILSHYLHETTLSASGLREVGRYRT 180 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RET CLQL G S++IA LG+S + V YL SA VKL+A QA+AKA Sbjct: 181 LSRRETQCLQLLATGRISKQIAADLGISENAVKLYLRSARVKLNAATSYQAVAKASFLEL 240 Query: 234 I 234 I Sbjct: 241 I 241 >gi|56697147|ref|YP_167510.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria pomeroyi DSS-3] gi|56678884|gb|AAV95550.1| autoinducer-binding transcriptional regulator LuxR [Ruegeria pomeroyi DSS-3] Length = 233 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 65/187 (34%), Gaps = 16/187 (8%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + Y D L + P+ W ++ + G+ Sbjct: 47 YVTYSDEWKLHYQEQGFHMIDPTLHMSQRSIAPVDWSRLERSNDFR--RVFRDAHDFGIG 104 Query: 114 PFAGIAFPVRLGFHKNGYVI-----FTSEFLMLANEVIIEAHGACYQVITDFLEL-FKKR 167 G+ PVR + G + T E+ L VI + + + R Sbjct: 105 D-QGLTIPVRGPYGDVGLLSVTRECSTEEWQKLVRHVIGDLQSLAVHIHDTVMSSDMLGR 163 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +L+ RE LQ G + ++I + L +S TV +L S+ KL A+ QA+ + Sbjct: 164 ILYHPSLSTREVEILQWVAAGKSQQDIGDILSISHRTVEVHLRSSREKLCALTTAQAVGR 223 Query: 228 AIRFGYI 234 A+ G I Sbjct: 224 AVGLGLI 230 >gi|37223253|gb|AAQ90229.1| LuxR [Aliivibrio fischeri] Length = 218 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 76/204 (37%), Gaps = 9/204 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K S +++ L + + Y + + I L NY + Sbjct: 19 KACRSNNDINQCLSDMTKMVHCE---YYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDA 75 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + NS PI W + V + S + ++ G +FP+ + Sbjct: 76 NLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNV-IKEAKTSGLITGFSFPIHTANNG 134 Query: 129 NGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183 G + F SE + + + A ++ ++ ++K + + +LT+RE CL Sbjct: 135 FGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYRKINIANNKSNNDLTKREKECLA 194 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNA 207 A +G +S +I++ LG S V Sbjct: 195 WACEGKSSWDISKILGCSEXXVTF 218 >gi|330891500|gb|EGH24161.1| LuxR transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] Length = 247 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 17/188 (9%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ +++Y D + H + P W+ + + ++ Sbjct: 60 SNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDF-LKRSAKYQL 118 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLM--LANEVIIEAHGACYQVITDFLELFKKRSS--- 169 +G F + + + + +A +I L K R+ Sbjct: 119 SSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHEL 178 Query: 170 ----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 A L+ RET L+ G + EIAE +S TV ++ + + KL+ QA+ Sbjct: 179 FPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 238 Query: 226 AKAIRFGY 233 KAI G Sbjct: 239 YKAINMGM 246 >gi|66044867|ref|YP_234708.1| LuxR transcriptional regulator [Pseudomonas syringae pv. syringae B728a] gi|33413265|emb|CAD97431.1| AHL regulator [Pseudomonas syringae pv. syringae] gi|63255574|gb|AAY36670.1| regulatory protein, LuxR:Autoinducer-binding [Pseudomonas syringae pv. syringae B728a] Length = 247 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 64/189 (33%), Gaps = 17/189 (8%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ +++Y D + H + P W+ + + ++ Sbjct: 60 SNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFFWREARHAIQGVETDDF-LKRSAKYQL 118 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV-ITDFLELFKKRSSAAR- 172 +G F + + + + I A Q+ + F + K + Sbjct: 119 SSGATFTLHDASGLFAALSLCNARQQTDFDQRIRDKAADIQMSLIRFHDRLTKTQAPHEL 178 Query: 173 -------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE L+ G EIAE +S TV ++ + + KL+ QA+ Sbjct: 179 FPQPTRCKLSSREIGVLKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 238 Query: 226 AKAIRFGYI 234 KAI G + Sbjct: 239 YKAINMGMV 247 >gi|229589152|ref|YP_002871271.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229361018|emb|CAY47880.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 254 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 50/198 (25%), Positives = 82/198 (41%), Gaps = 16/198 (8%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQE-----ETVIESSGQLS 105 + EL N D + D S + P +W + + +I+ Sbjct: 57 VLELRNTPPDWHALWCSKGFYQIDPVQHLALSTVSPFVWSYDVKVDTPLQKIIDPCHAPV 116 Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC--YQVITDFLE- 162 G++ P+ L G+ T A+ V+ +A + +I+ L+ Sbjct: 117 STYLHDQQLTCGVSVPIHLPRG--GFASLTGLRTGKAHSVLQDAQQTLSDFSLISHALQE 174 Query: 163 ----LFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LF K R+ +LT+RE CL+ A DG T+ EIA +L S+ V +L SA KL Sbjct: 175 AAYPLFSKELRTYPHIHLTKRERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKL 234 Query: 217 DAVNRIQAIAKAIRFGYI 234 A NR+QA+ +A + + Sbjct: 235 GAKNRVQAVVRATHYRLL 252 >gi|107027317|ref|YP_624828.1| LuxR family transcriptional regulator [Burkholderia cenocepacia AU 1054] gi|116691286|ref|YP_836819.1| LuxR family transcriptional regulator [Burkholderia cenocepacia HI2424] gi|170736675|ref|YP_001777935.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|105896691|gb|ABF79855.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia AU 1054] gi|116649286|gb|ABK09926.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia HI2424] gi|169818863|gb|ACA93445.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 237 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 64/211 (30%), Gaps = 16/211 (7%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F P + + + N+ + D + S P++W + Sbjct: 34 GFRYCVYGLRRTLPLARPDLQIVGNHPREWEHRYVKFGYVTIDPIIKRVASQPRPVVWNA 93 Query: 92 IQE---ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148 E + +R + G + + L + I Sbjct: 94 FDEPGDTAFWHDAACFGMRYGWSHGGYDR--------AGNLGVLTLVRDTTPLDADEISR 145 Query: 149 AHGACYQVITD-----FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 C + L + LT RE L DG T+ EI G++ Sbjct: 146 LRAPCASLAHAAHAYLMPRLADPIAPVGTGLTLREREVLAWTADGKTAYEIGMIFGIAER 205 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L +A VKLDA+N+ A KA G + Sbjct: 206 TVKFHLQNAVVKLDAMNKTHAATKAAMLGLL 236 >gi|303241719|ref|ZP_07328216.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] gi|302590720|gb|EFL60471.1| two component transcriptional regulator, LuxR family [Acetivibrio cellulolyticus CD2] Length = 216 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 9/118 (7%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDF--LELFKKRSSAARN 173 L GYV+ ++ ++L + G Y +++ +F + L K S N Sbjct: 95 TLQMGAEGYVLKDADPVVLVEAIRSVNRGQSYIQANMTRELVREFNKITLHDKSKSEESN 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L +G ++EIA++L +S TV ++ + KL+ +R QA A + Sbjct: 155 LTAREVEVLELIAEGMINKEIAKRLYISEKTVKNHVSNIFRKLNVSDRTQAAIYAFKH 212 >gi|17548004|ref|NP_521406.1| transcriptional activator SOLR transcription regulator protein [Ralstonia solanacearum GMI1000] gi|20140008|sp|P58590|SOLR1_RALSO RecName: Full=Transcriptional activator protein solR gi|17430310|emb|CAD17075.1| transcriptional activator solr. transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 236 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 45/231 (19%), Positives = 78/231 (33%), Gaps = 17/231 (7%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 + Q+ I + ++ F + P + + Y + Sbjct: 14 TAQDERQLFRQIASVVRQLGFDYCCYGIRVPLPVSKPAVAIFDTYPAGWMEHYQASGFLE 73 Query: 73 GDDFLFHFNSGLLPIIW--QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + S IIW E + S + G+A G Sbjct: 74 IDPTVRTGASSSDLIIWPVSIRDEAARLWSDAR-------DFGLNIGVARSSWTAHGAFG 126 Query: 131 YVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + L + + +++ FL + K ++ LT RE L Sbjct: 127 LLTLARRADPLTAAELEQLSATTNWLANLAHALMSPFL-MPKLVPESSAALTAREREVLC 185 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G I Sbjct: 186 WTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIAIGLI 236 >gi|159044368|ref|YP_001533162.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] gi|157912128|gb|ABV93561.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12] Length = 243 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 44/181 (24%), Positives = 64/181 (35%), Gaps = 11/181 (6%) Query: 63 DIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 P + Y D + P W I + T + + ++ Sbjct: 58 GFPESWLCDYVNERLYEVDPIPAYAAHATEPFRWSDIAKLTPLTAPETDFLKRLLQQGLG 117 Query: 116 AGIAFPVRLGFHKNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 G+A V +NGYV F S L+ I E A + L + A Sbjct: 118 DGLALQVFGPNMRNGYVGVGFASSDPDLSGGDIRELQAAAQAAHLRYCTLVPVATPEA-- 175 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G ++ IAE LG+S HTV+ + KL+ +R A + I G Sbjct: 176 LTPREREVLGWIARGKSNSVIAEILGVSPHTVDTLVRRIYGKLEVADRTTAAIRGIGAGL 235 Query: 234 I 234 I Sbjct: 236 I 236 >gi|254249338|ref|ZP_04942658.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] gi|124875839|gb|EAY65829.1| regulatory protein, LuxR [Burkholderia cenocepacia PC184] Length = 288 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 64/211 (30%), Gaps = 16/211 (7%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F P + + + N+ + D + S P++W + Sbjct: 85 GFRYCVYGLRRTLPLARPDLQIVGNHPREWEHRYVKFGYVTIDPIIKRVASQPRPVVWNA 144 Query: 92 IQE---ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148 E + +R + G + + L + I Sbjct: 145 FDEPGDTAFWHDAACFGMRYGWSHGGYDR--------AGNLGVLTLVRDTTPLDADEISR 196 Query: 149 AHGACYQVITD-----FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 C + L + LT RE L DG T+ EI G++ Sbjct: 197 LRAPCASLAHAAHAYLMPRLADPIAPVGTGLTLREREVLAWTADGKTAYEIGMIFGIAER 256 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L +A VKLDA+N+ A KA G + Sbjct: 257 TVKFHLQNAVVKLDAMNKTHAATKAAMLGLL 287 >gi|296282761|ref|ZP_06860759.1| regulatory protein, LuxR [Citromicrobium bathyomarinum JL354] Length = 252 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 51/254 (20%), Positives = 90/254 (35%), Gaps = 30/254 (11%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQ--------LICELHN 56 L + + ++ P + R Y + A D ++ L E+ Sbjct: 3 DLASVRITDQDDIRPAAEALHAVALERG---YRVAPAHDIADKRTPVDKDGNVLAMEVFG 59 Query: 57 YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG---GLL 113 + D P T + ++ + L + Sbjct: 60 WAGDESAWWRNSRIALDSPITTACRFENEPYWVNEDGFRTRLPNAYLEKIDLTNFTKRAM 119 Query: 114 PFAGIAFPVRLGFHKNGYVIF----------TSEFLMLAN--EVIIEAHGACYQVITDFL 161 A I PV + F + G V F +++ A+ ++ A + Y V+ Sbjct: 120 TRAAIVVPVHMAFGRIGAVSFNPLDEDRIDLAADYEEYADLFAILSRAFISSYTVVM--- 176 Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + A L++RE CL+ A G T EI+ + S TV ++ +A++KL+AVNR Sbjct: 177 -TSPEPLPAGSRLSKREVECLRWAAIGKTDLEISMIMSRSRATVRFHMHNASIKLNAVNR 235 Query: 222 IQAIAKAIRFGYIC 235 Q + KA + GYI Sbjct: 236 SQTVFKAAQLGYIS 249 >gi|126725039|ref|ZP_01740882.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2150] gi|126706203|gb|EBA05293.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2150] Length = 226 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 15/233 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +++ +L +L + I++ + +++ S + + + I Sbjct: 2 QQAKTLDDLQNVILGIRDLYDVEHLVYHSVKSTGEQYGVLTYT-DEWTQHYVEQNYERI- 59 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + P+ W+ + + + S + + G++ P+R + Sbjct: 60 -----DPVVLGCFQSFQPVTWKELDWSS--KGSRRFLGEALDNGVGNQGLSVPIRGPAGQ 112 Query: 129 NGYV-----IFTSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCL 182 + E + + + LE+ K S + L+ RE+ L Sbjct: 113 FALFTVNDNCKDGCWAKFTAEHHRQMILIAHYLNNKALEIEHGKLMSPVKALSPRESDSL 172 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L GY+ A+ L +S HT+ Y+ +A KL + N A+A A+ G I Sbjct: 173 TLLAMGYSRAHAADTLKISEHTLRVYIEAARFKLGSANTTHAVAAALSRGLIV 225 >gi|330973884|gb|EGH73950.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aceris str. M302273PT] Length = 247 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 64/189 (33%), Gaps = 17/189 (8%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ +++Y D + H + P W+ + + ++ Sbjct: 60 SNYPDSWLKSYIASNYHLIDPIIKHAWHSITPFFWREARHAIQGVETDDF-LKRSAKYQL 118 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV-ITDFLELFKKRSSAAR- 172 +G F + + + + I A Q+ + F + + + Sbjct: 119 SSGATFTLHDASGLFAALSLCNARQQTDFDQRIRDKAADIQMSLIRFHDRLTRTQAPHEL 178 Query: 173 -------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE L+ G EIAE +S TV ++ + + KL+ QA+ Sbjct: 179 FPQPTRCKLSSREIGVLKWVAMGKAYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 238 Query: 226 AKAIRFGYI 234 KAI G + Sbjct: 239 YKAINMGMV 247 >gi|167563421|ref|ZP_02356337.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis EO147] gi|167570595|ref|ZP_02363469.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 237 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 78/231 (33%), Gaps = 14/231 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S E I+ A +F + +P + I N+ Sbjct: 15 ARSEDEAF---RSIEAATTALDFEYCAYALRVPWPLSRPRIETRSNFPEQWKRRYGEAGF 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D L H PI+ + +S G A + G Sbjct: 72 LDVDPILAHGRRSQQPIV-----LTEALFASAHQMWVEAQSFGLRFGWAQSNFDAYGGMG 126 Query: 131 YVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + +E + A E + + L K + R LTERE L+ Sbjct: 127 MLALVRSSEPMTEAELGAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTEREVEVLKW 186 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A G + Sbjct: 187 AADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLLS 237 >gi|116878316|gb|ABK32012.1| transcriptional regulator [Burkholderia vietnamiensis] gi|116878319|gb|ABK32014.1| transcriptional regulator [Burkholderia vietnamiensis] Length = 237 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 78/239 (32%), Gaps = 32/239 (13%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + S ++ ++A F + + P + + + P +E Sbjct: 15 AKSEADVFLEFSA---DVRALGFDHCSFGLRIPLPISK-------PQFMLQSNYPQTWVE 64 Query: 71 TYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 Y D + H S + P+IW++ + + G P Sbjct: 65 RYVSQNYFAVDPTVRHGLSRMSPLIWRADSQTQCV-----QFWEEADQHGLRHGWCMPSV 119 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE--------AHGACYQVITDFLELFKKRSSAARNLT 175 G + + + E A+ A Y + L+ + LT Sbjct: 120 SRTGAIGLITMVRSGEPIEERELAEKGYQMSWLANTANYAMSMHLLQRLVPEYT--VELT 177 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQ + G T EI + + + TV +L +A KL+A N+ +A KA G + Sbjct: 178 VREREALQWSAAGKTYAEIGKIMHVDDRTVKFHLVNAMRKLNAANKTEAAVKATMLGLL 236 >gi|115265509|dbj|BAF32771.1| transcriptional regulator of LuxR family [Pseudomonas syringae pv. actinidiae] gi|330965240|gb|EGH65500.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] Length = 254 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 69/176 (39%), Gaps = 13/176 (7%) Query: 72 YGDDFLFHFNSG-LLPIIWQSIQEE-----TVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 Y D + H + P +W T I + VR G+ P+ + Sbjct: 77 YQIDPVQHLAVARVSPFVWSYQPRAETVLQTFITDMHKPVVRYLHDSHMTCGVTVPIHMP 136 Query: 126 FHKN----GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTERE 178 G +S+ + + G + K RS A LT RE Sbjct: 137 KGGFATLTGLCSDSSDVALEDARQSLAEFGLLAHAFQEVAYPLFDQKMRSCNAIKLTRRE 196 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL + +G T+ EIA++L SV T+ +L SA KL A NR+QA+ +A+ + + Sbjct: 197 RECLSWSAEGLTAREIADQLNRSVATITLHLNSAMQKLGAKNRVQAVVRAVHYRLL 252 >gi|16760896|ref|NP_456513.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141412|ref|NP_804754.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213053513|ref|ZP_03346391.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426356|ref|ZP_03359106.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213616131|ref|ZP_03371957.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213650336|ref|ZP_03380389.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824072|ref|ZP_06543670.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25302436|pir||AH0749 cell-division regulatory protein STY2158 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503193|emb|CAD05699.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29137039|gb|AAO68603.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 240 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 82/236 (34%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ ++ +++ L R++ F Y + P + I P Sbjct: 15 LRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKI-------SLRTTYP 64 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y + F + L P + + V+ Q G+ V Sbjct: 65 QAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124 Query: 124 LGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L G++ F+ L + +EV + + ++ L A ++RE Sbjct: 125 LPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|194468906|ref|ZP_03074890.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455270|gb|EDX44109.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] Length = 240 Score = 116 bits (291), Expect = 3e-24, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 82/236 (34%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ ++ +++ L R++ F Y + P + I P Sbjct: 15 LRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKI-------SLRTTYP 64 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y + F + L P + + V+ Q G+ V Sbjct: 65 PAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124 Query: 124 LGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L G++ F+ L + +EV + + ++ L A ++RE Sbjct: 125 LPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|212640416|ref|YP_002316936.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212561896|gb|ACJ34951.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 260 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 18/129 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L GY++ + L V + A G Y ++ ++ L Sbjct: 129 LQTGAMGYLLKEMDADALIEAVRVVAEGGSYLHPKVTHNLVKEYRRLVAGEGGGKEKQNQ 188 Query: 174 --------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE LQL DG +++ IA+ L +S TV ++ + KL+ +R QA+ Sbjct: 189 DVCRPYHLLTRRECEVLQLLADGKSNKGIADALYISEKTVKNHVSNILQKLNVNDRTQAV 248 Query: 226 AKAIRFGYI 234 AI+ G++ Sbjct: 249 VVAIKNGWV 257 >gi|56421685|ref|YP_149003.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56381527|dbj|BAD77435.1| two-component response regulator (extracellular proteinase response regulator) [Geobacillus kaustophilus HTA426] Length = 224 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L GY++ + L V I A G Y +I ++ L ++ A Sbjct: 95 LQTGATGYLLKEMDADTLIEAVRIVAEGGSYLHPKVTHNLIREYRRLTTEKGGAVVKQEV 154 Query: 174 ------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE LQL DG ++ I E L +S TV ++ S KL+ +R QA+ Sbjct: 155 RRPLHLLTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSSILQKLNVNDRTQAVVV 214 Query: 228 AIRFGYI 234 AI+ G++ Sbjct: 215 AIKNGWV 221 >gi|161724877|emb|CAO85750.1| LasR protein [Pseudomonas aeruginosa] Length = 239 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 64/188 (34%), Gaps = 17/188 (9%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 G+ P E Y D + +LPI W++ +T + Sbjct: 54 GNYPAAWHEHYDRTGYARVDPTVSQCTQNVLPIFWEASIYQTRKQHE---FFEEASAAGL 110 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI-IEAHGACYQVITDFL------ELFKKR 167 G+ P+ + G + + E A +E+ ++ D+ F+ Sbjct: 111 VYGLTMPLHGARGELGALSLSVEAENRAEANRFMESVLPTLWMLKDYALQSGAGLAFEHP 170 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S LT RE LQ G TS EI+ S VN ++G+ K +R A Sbjct: 171 VSKPVVLTSREKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIM 230 Query: 228 AIRFGYIC 235 A+ G I Sbjct: 231 AVNLGLIT 238 >gi|209548400|ref|YP_002280317.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534156|gb|ACI54091.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 240 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 56/180 (31%), Gaps = 2/180 (1%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLP 114 N+ + D + + P + E + L Sbjct: 60 NWPAEMVDYYDAHNLMVDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIELFNRYGM 119 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 G FPV G + + + + + + +L Sbjct: 120 EKGAYFPVHDAAGGRGAMSISGSR-NFSMIEMAKLLFIATLIYDRLSQLTLNEKHKPIEF 178 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T E CL+L G EIA+ L L+ + VN ++GSA KL R QA+ A+R + Sbjct: 179 TRNELDCLRLTAGGRKGAEIAKLLDLTENAVNNHIGSAIKKLGCTTRTQAVVSALRLNIL 238 >gi|307322370|ref|ZP_07601730.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306891988|gb|EFN22814.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] Length = 243 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 53/241 (21%), Positives = 85/241 (35%), Gaps = 29/241 (12%) Query: 9 KKSSSLQELSPRLHLI--QNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPN 66 + + +L P L + + + F + Y P Sbjct: 15 QSAKHRGDLHPALDELCARYGLSHMTFLVVCSGGRSGL------------YPDYCTTYPG 62 Query: 67 ILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 E Y D + G LP+ W S+ + + +L + G+ Sbjct: 63 KWTEIYVDKRYFDIDPVIDVIRWGFLPVDWSSLDRRSA--QAYRLFKEARSYDIGPHGLT 120 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------N 173 P+R + +S + + Q+++ +L +S R Sbjct: 121 IPIRGSKGERCLFSVSSNLPKRDWSRLGASSIHELQILSHYLHETTLSASGLREVGRYRT 180 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RET CLQL G S++IA LG+S + V YL SA VKL+A QA+AKA Sbjct: 181 LSRRETQCLQLLATGRISKQIAADLGISENAVKLYLRSARVKLNAATSYQAVAKASFLEL 240 Query: 234 I 234 I Sbjct: 241 I 241 >gi|7385149|gb|AAF61719.1|AF232769_1 acylhomoserine lactone dependent transcriptional regulator [Pseudomonas fluorescens] Length = 241 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 61/186 (32%), Gaps = 17/186 (9%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 G P +E Y D + + ++W + + G + Sbjct: 61 YGSYPQPWMERYQQQNYAAIDPSILNGLRSTEMVVWNDV-----LFGKGSVLWGEAQDWG 115 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANE----VIIEAHGACYQVITDFLELFKKR-S 168 G P+R + ++ + + EL Sbjct: 116 LRVGATVPIRTPDGALSVLSVARRNTAISAVEREVIRLRLRCIIELAAGRLSELGHSNTQ 175 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S + L+ RE LQ DG +S EIA LG+SV+TVN +L K A N+ A A A Sbjct: 176 SDPQELSAREREILQWTADGKSSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYA 235 Query: 229 IRFGYI 234 G I Sbjct: 236 AVLGLI 241 >gi|76811685|ref|YP_334182.1| ATP-dependent transcription regulator LuxR [Burkholderia pseudomallei 1710b] gi|124386221|ref|YP_001028861.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10229] gi|126450742|ref|YP_001081227.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei NCTC 10247] gi|167003830|ref|ZP_02269610.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] gi|167720437|ref|ZP_02403673.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei DM98] gi|167816634|ref|ZP_02448314.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167825038|ref|ZP_02456509.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] gi|167846546|ref|ZP_02472054.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167895126|ref|ZP_02482528.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167903510|ref|ZP_02490715.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|167919762|ref|ZP_02506853.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] gi|242317090|ref|ZP_04816106.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254195948|ref|ZP_04902374.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|76581138|gb|ABA50613.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710b] gi|124294241|gb|ABN03510.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10229] gi|126243612|gb|ABO06705.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei NCTC 10247] gi|169652693|gb|EDS85386.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|242140329|gb|EES26731.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|243060693|gb|EES42879.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei PRL-20] Length = 237 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 75/239 (31%), Gaps = 12/239 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 L S+ E ++ A +F + +P + I N+ Sbjct: 5 AEDLLAGLDSARSE-EEAFRSVETAAAALDFEYCAYGLRVPWPLSRPRIETRSNFPEQWK 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D L H P++ + +S G A Sbjct: 64 RRYVEAGFLDVDPILAHGRRSQQPVV-----LAETLFASAHQMWVEAQSFGLRFGWAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTE 176 + G + + + ++ + + R LTE Sbjct: 119 FDAYGGMGMLALVRSREPVTAAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTE 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A G + Sbjct: 179 REVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLLS 237 >gi|170700574|ref|ZP_02891575.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] gi|170134522|gb|EDT02849.1| transcriptional regulator, LuxR family [Burkholderia ambifaria IOP40-10] Length = 240 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 44/238 (18%), Positives = 74/238 (31%), Gaps = 23/238 (9%) Query: 17 LSPRLHLIQNRIKARNFALYTINS--ALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 + P L R+ N+ +L FP + Y D Sbjct: 4 IVPFLVPFLKANNLRSLTNLLANAAHSLGFPCYAVSRVSRFRSRSSPRIFAETIHVHYPD 63 Query: 75 DFLFHFNSGL---------------LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 +++ H+ + P W I + + + GI+ Sbjct: 64 NWVNHYLAHDYGLVDPVHRAAFIYNSPYRWSDI---PGLSEPERRVLGEAHDAGLTHGIS 120 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEV-IIEAHGACYQVITDFLELFKKR--SSAARNLTE 176 P+ F+ + + + A A +F L L+ Sbjct: 121 IPIYEPDGSVLLFSFSGPPHRVNTALNVRRAQLASLLFHAEFQRLAPIPHVEPPTLRLSP 180 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 R+ CL G G TS EI +G+S HTV+ +L A L+ +R +A A +G I Sbjct: 181 RQQECLYWVGQGKTSPEIGMIMGISHHTVDYHLSEAMKILNVNSRTKAAVFASTYGLI 238 >gi|300702552|ref|YP_003744152.1| transcriptional activator protein solr [Ralstonia solanacearum CFBP2957] gi|299070213|emb|CBJ41504.1| Transcriptional activator protein solR [Ralstonia solanacearum CFBP2957] Length = 236 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 47/233 (20%), Positives = 82/233 (35%), Gaps = 16/233 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + +L + I ++ F + + P + + Y Sbjct: 13 RTAEDEHQLFREVASIARQL---GFDYCCYGARMPLPVSKPAVAIFDTYPAGWMQHYQAN 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + S I+W +++ S + GL G+A Sbjct: 70 GFLDIDPTVRAGASSSDLIVW---PVSIRDDAARLWSDARDAGLNI--GVARSSWTAHGA 124 Query: 129 NGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTERETSC 181 G + L + + A + +++ FL S A LT RE Sbjct: 125 FGLLTLARHADPLTAAELGQLSIATHWLANLAHTLMSPFLVPQLVPESNAV-LTAREREV 183 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G I Sbjct: 184 LCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236 >gi|300689864|ref|YP_003750859.1| transcriptional activator protein solR [Ralstonia solanacearum PSI07] gi|299076924|emb|CBJ49537.1| Transcriptional activator protein solR [Ralstonia solanacearum PSI07] Length = 236 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 75/233 (32%), Gaps = 16/233 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + ++L + I ++ F + P + + Y Sbjct: 13 RTAQDERQLFREITSIARQL---GFDYCCYGVRMPLPVSKPAVAIFDTYPAGWMQHYQAS 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + S IIW I G+A Sbjct: 70 GFLEIDPTVRAGASSSDLIIW-----PVSIRDEAMRLWSDARDFGLNIGVARSSWTARGA 124 Query: 129 NGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 G + L + + +++ FL + K + LT RE Sbjct: 125 FGLLTLARHADPLTAAELDRLSATTNWLANLAHTLMSPFL-MPKLVPESNAVLTAREREV 183 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G I Sbjct: 184 LCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIVIGLI 236 >gi|326202012|ref|ZP_08191882.1| two component transcriptional regulator, LuxR family [Clostridium papyrosolvens DSM 2782] gi|325987807|gb|EGD48633.1| two component transcriptional regulator, LuxR family [Clostridium papyrosolvens DSM 2782] Length = 216 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 9/118 (7%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLE--LFKKRSSAARN 173 L GYV+ +E +L + H Y +++ +F L+++ S A N Sbjct: 95 TLQLGCEGYVLKDAESSVLIEAIRSVYHDQTYIQPNMTGELVKEFNRVTLYEQDKSIANN 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L +G ++EIA+ L +S TV ++ + KLD +R QA A + Sbjct: 155 LTNREVEVLKLIAEGMINKEIAKTLYISEKTVKNHISNIFKKLDVNDRTQAAIYAFKH 212 >gi|300693708|ref|YP_003749681.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein (luxr family) [Ralstonia solanacearum PSI07] gi|299075745|emb|CBJ35050.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein (LuxR family) [Ralstonia solanacearum PSI07] Length = 238 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 83/236 (35%), Gaps = 14/236 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 + + ++S ++ I+ A F P + I L+NY + Sbjct: 10 DIFSEAATSTSDVFAH---IEAAALALGFEHVAYGFRAPLPLSEPKIILLNNYPQAWRER 66 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 + D + H P+IW + + GL G A Sbjct: 67 YLEAGYLHVDPSVAHACRSQAPVIWS---DPLFQYTPALWDEAQAQGLRV--GWAQSSLD 121 Query: 125 GFHKNGYVIFTSE------FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 G + + + N ++ + L + +LT RE Sbjct: 122 SLGVGGMLSLSRSCEPLTARELADNTRRMQWLTHMAHLALSRLLRADLAGDSDDSLTGRE 181 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ DG ++++IA+ L +S +TV+ ++ +A KL AVN+ A+ +A GY+ Sbjct: 182 VEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLQAVNKTAAVVRAAMLGYL 237 >gi|326408213|gb|ADZ65278.1| Transcriptional activator, LUXR family [Brucella melitensis M28] gi|326537928|gb|ADZ86143.1| Transcriptional activator protein solR [Brucella melitensis M5-90] Length = 171 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 14/169 (8%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D L + + P+IW +S GI+ P G + Sbjct: 9 DPLLRRGVNSIDPLIWS-----QNFFASAPQIWADAVKYGLKVGISQPCWAAQGVFGLLS 63 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RNLTERETSCLQLA 185 F L I Q++T+ L L +++ A +LT RE L+ Sbjct: 64 FVRSGPALTPGEISMLR-RQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLREREILRWT 122 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 123 SEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 171 >gi|206562058|ref|YP_002232821.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] gi|198038098|emb|CAR54046.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] Length = 237 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 65/211 (30%), Gaps = 16/211 (7%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F P + + + N+ + D + S P++W + Sbjct: 34 GFRYCVYGLRRTLPLARPDMQIVGNHPREWEHRYVKFGYVTIDPIIKRVASQPRPVVWNA 93 Query: 92 IQE---ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148 E + +R + G + + L + I Sbjct: 94 FDEPGDTAFWHDAACFGMRYGWSHGGYDR--------AGNLGVLTLVRDTTPLDADEISR 145 Query: 149 AHGACY---QVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 C +L L + LT RE L DG T+ EI G++ Sbjct: 146 LRAPCASLSHAAHAYLMPRLADPIAPVGTGLTLREREVLAWTADGKTAYEIGMIFGIAER 205 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV +L +A VKLDA+N+ A KA G + Sbjct: 206 TVKFHLQNAVVKLDAMNKTHAATKAAMLGLL 236 >gi|83720643|ref|YP_442349.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83654468|gb|ABC38531.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 241 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 76/239 (31%), Gaps = 12/239 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 L S+ E I+ A +F + +P + I N+ Sbjct: 9 AEDLLAGLDSARSE-DEAFRSIETAATALDFEYCAYGLRVPWPLSRPRIETRSNFPEQWK 67 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D L H P++ + +S G A Sbjct: 68 RRYVEAGFLDVDPILAHGRRSQQPVVLNE-----TLFASSHQMWVEAQSFGLRFGWAQSS 122 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTE 176 + G + + + + ++ + + R LTE Sbjct: 123 FDAYGGMGMLALVRSREPVTHAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTE 182 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A G + Sbjct: 183 REVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLLS 241 >gi|148256507|ref|YP_001241092.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146408680|gb|ABQ37186.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 242 Score = 116 bits (290), Expect = 3e-24, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 68/203 (33%), Gaps = 16/203 (7%) Query: 46 RRQQLICELHNYDLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVI 98 + L L ++ Y D + H + LLP+ W +++ Sbjct: 40 NARHLPRTEEPNPLLLLTYDAEWVQRYKTQDYFQIDPVIKHGLASLLPLDWSNLESGEA- 98 Query: 99 ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT 158 + G+ P+R + TS + A + +I Sbjct: 99 -DVRAFFREARSFGVGRNGMTIPIRGPHGERALFSLTSNLSAGQWQTTRLAMMRDFMIIA 157 Query: 159 DFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 F R S R L+ RE LQLA G+ ++IA L +S V YL + Sbjct: 158 YFFHDQAVRLSGMRDLPGMGRPLSRRERETLQLAARGFAPKQIAADLRVSTTAVRLYLQT 217 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 A KL+ Q IAKAI I Sbjct: 218 ARTKLECTTLTQGIAKAISLDLI 240 >gi|307130193|ref|YP_003882209.1| transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937] gi|306527722|gb|ADM97652.1| Transcriptional regulator ahyR/asaR family [Dickeya dadantii 3937] Length = 326 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 41/171 (23%), Positives = 63/171 (36%), Gaps = 10/171 (5%) Query: 74 DDFLFHFNSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D H P W + V+ + G+ P+ L Sbjct: 156 DPVQIHALDSCAPFTWSYCRPENTSLRRVLNEQHRPVSHYMQNHNMRCGVTVPLHLPKGG 215 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTERETSCLQ 183 V L NE+ T +F A +L+ RE CL Sbjct: 216 FVTVTAIHTGLDTDNEIETVLARIGLLAHTFQEHVFPLFDEAWYHCRHVHLSPREQECLA 275 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +G T++EIA KL S+ TVN +L +A KL A NR+QA+ +A+ + + Sbjct: 276 WSAEGLTAKEIARKLHRSLATVNLHLNNAARKLGASNRVQAVVRAMHYRLL 326 >gi|121582936|ref|YP_973378.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] gi|120596198|gb|ABM39636.1| response regulator receiver protein [Polaromonas naphthalenivorans CJ2] Length = 195 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 45/164 (27%), Positives = 75/164 (45%), Gaps = 6/164 (3%) Query: 71 TYGDDFLFHFNSGLLPII-WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 DF ++ + P++ W+ I + + G + + GL IAFP+ G Sbjct: 36 AKSGDFGVAWDDFMAPLVGWEDIADAIPEATQGWRMLCVGHGLQSVLRIAFPMTGGRAFE 95 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 Y+ F+S N+ A + + L + A L+ RE CL+LA G Sbjct: 96 CYL-FSSLKWHDQND----AAQLAWSAFIKWPALKQALIQAHSPLSPREIECLKLAFKGL 150 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+ E +EK+G + TV ++ +A+ KL A N++ AI +A FG Sbjct: 151 TARESSEKMGCTERTVTFHIANASTKLRADNKLAAIQRACWFGL 194 >gi|14993797|gb|AAK73190.1| transcriptional activator CsaR [Pseudomonas chlororaphis subsp. aureofaciens] Length = 241 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 77/243 (31%), Gaps = 25/243 (10%) Query: 4 NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63 N L + + L++ +++ F Y P + D+ G Sbjct: 12 NDLRMEMLKQQESAQ-VFALLEREVRSLGFDFYAYGVRHSIPFTR------PKIDI-YGS 63 Query: 64 IPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 P +E Y D + + ++W + + Sbjct: 64 YPQAWVERYQQQNYAAIDPTILNGLRSTEMVVWSD-----ALFGKSSVLWGEAREWGLRV 118 Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKKRSSAAR 172 G P+ + E ++ E+ + EL S A + Sbjct: 119 GATLPIHTPDSALSVLSVARECTAISAVELEEIRLRLRCIIELATMRLGELGHPSSQAEQ 178 Query: 173 -NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQ DG +S EIA LG+SV+TVN +L K A N+ A A A Sbjct: 179 LELSAREREILQWTADGKSSGEIALILGISVNTVNFHLKVIQKKFGAANKTLAAAYAAVL 238 Query: 232 GYI 234 G I Sbjct: 239 GLI 241 >gi|9297032|sp|O30919|SOLR2_RALSO RecName: Full=Transcriptional activator protein solR gi|2444467|gb|AAC45947.1| SolR [Ralstonia solanacearum] Length = 236 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 82/235 (34%), Gaps = 20/235 (8%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + +L + I ++ F + + P + + Y Sbjct: 13 RTAEDEHQLFREIAAIARQL---GFDYCCYGARMPLPVSKPAVAIFDTYPAGWMQHYQAS 69 Query: 69 IETYGDDFLFHFNSGLLPIIW--QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + S I+W + + S + + GL G+A Sbjct: 70 GFLDIDPTVRAGASSSDLIVWPVSIRDDAARLWSDAR-----DAGLNI--GVARSSWTAH 122 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTERET 179 G + L + + A + +++ FL S A LT RE Sbjct: 123 GAFGLLTLARHADPLTAAELGQLSIATHWLANLAHTLMSPFLVPQLVPESNAV-LTTRER 181 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G+G T+ EI + L +S TVN ++ + +KL A N++QA+ KAI G I Sbjct: 182 EVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVVKAIATGLI 236 >gi|320010128|gb|ADW04978.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 219 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKR--SSAARNL 174 L +G+++ + L + + A GA Q++ + + + L Sbjct: 99 LRAGASGFLLKDAPPDRLLHGIRTVAAGAALLDPDVTRQLVGRYAARIRPTGGTDPDIPL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L +G ++ EIA L +S TV ++ KL +R+QA+ A R G + Sbjct: 159 TPRELEVLRLIAEGLSNSEIAASLVISRETVKTFVSRILTKLGLRDRVQAVVYAYRQGLV 218 Query: 235 C 235 Sbjct: 219 S 219 >gi|541659|dbj|BAA06490.1| LasR [Pseudomonas aeruginosa] Length = 239 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 41/188 (21%), Positives = 63/188 (33%), Gaps = 17/188 (9%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 G+ P E Y D + H +LPI W+ +T + Sbjct: 54 GNYPAAWREHYDRAGYARVDPTVSHCTQSVLPIFWEPSIYQTRKQHE---FFEEASAAGL 110 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI-IEAHGACYQVITDFLE------LFKKR 167 G+ P+ + G + + E A IE+ ++ D+ F+ Sbjct: 111 VYGLTMPLHGARGELGALSLSVEAENRAEANRFIESVLPTLWMLKDYALQSGAGLAFEHP 170 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S LT E LQ G TS EI+ S VN ++G+ K +R A Sbjct: 171 VSKPVVLTSWEKEVLQWCAIGKTSWEISVICNCSEANVNFHMGNIRRKFGVTSRRVAAIM 230 Query: 228 AIRFGYIC 235 A+ G I Sbjct: 231 AVNLGLIT 238 >gi|118593225|ref|ZP_01550610.1| transcriptional regulatory protein [Stappia aggregata IAM 12614] gi|118434116|gb|EAV40772.1| transcriptional regulatory protein [Stappia aggregata IAM 12614] Length = 233 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 90/229 (39%), Gaps = 10/229 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRR--QQLICELHNYDLDSGDIPN 66 + S L ++++ ++ R A + + + L P R L+ D + I + Sbjct: 12 RAISEANAAHHVLDILESNLR-RMGATHILITGLPMPNRPIDNLVQRFRWPDQRNDGIES 70 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + D L +W +E S L+ EG + + PV + Sbjct: 71 TSLSA-NDSALMLGLGSNRARVWTI--SAGDMEHSDLLASAGEGSQV----LVIPVTELY 123 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +V + L + + + EL L+ RE L+L Sbjct: 124 PFQAFVFASGPALQVNKYDLSNLEALAAAAFSRLRELGVISGQRPGALSTRERKVLELTA 183 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G T+ EIA+ L +S TV+A+L +A+VKL+A N+ + +A+R+G I Sbjct: 184 YGKTAGEIADVLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQIS 232 >gi|99078080|ref|YP_611338.1| LuxR family transcriptional regulator [Ruegeria sp. TM1040] gi|99035218|gb|ABF62076.1| transcriptional regulator, LuxR family [Ruegeria sp. TM1040] Length = 239 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 68/188 (36%), Gaps = 15/188 (7%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 +P + Y D + + P+ W+ + + S+ + G + Sbjct: 53 CSTLPTAWQDRYSAMSYHRIDPVVIGCYTAFHPVDWRDLDWSARLASAYRKDSIAFG--V 110 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------ 167 G + PVR + + T + + H ++ ++ Sbjct: 111 GNQGYSVPVRGPAGQYAILSITKSCEGEVWDKFTQKHSRDLILLAHYVNRRALEFEVSYY 170 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + + L+ RE+ L L +G + AE + +S HT+ Y+ A KL A N A+A+ Sbjct: 171 PTPEQPLSMRESEALSLLAEGMSRARAAEAMAISEHTLRVYIEGARSKLQAQNTTHAVAR 230 Query: 228 AIRFGYIC 235 A+ G I Sbjct: 231 AVTMGLIA 238 >gi|327438509|dbj|BAK14874.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 204 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 2/108 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L N + I G ++ L F + LTERE+ L+L Sbjct: 94 AGVRGYLLKDSPIEELVNSIRIIMDG--RRIYAPELVDFVYEDDSENPLTERESQVLELV 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G T++EIA +L LS TV Y+ KL NRI+AIA+ G+ Sbjct: 152 AEGKTTKEIAAELYLSAGTVRNYISVILDKLGVGNRIEAIARFKEKGW 199 >gi|125973782|ref|YP_001037692.1| two component LuxR family transcriptional regulator [Clostridium thermocellum ATCC 27405] gi|256004513|ref|ZP_05429492.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum DSM 2360] gi|281417939|ref|ZP_06248959.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum JW20] gi|125714007|gb|ABN52499.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum ATCC 27405] gi|255991518|gb|EEU01621.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum DSM 2360] gi|281409341|gb|EFB39599.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum JW20] gi|316940025|gb|ADU74059.1| two component transcriptional regulator, LuxR family [Clostridium thermocellum DSM 1313] Length = 216 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 9/118 (7%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELF--KKRSSAARN 173 L GYV+ ++ +L + G Y +++ +F + +K + Sbjct: 95 TLQMGAEGYVLKDADSTVLVEAIRSVNRGESYIQSNMTKELVREFNRVTVNEKAKKTEND 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G ++EIA++L +S TV ++ + KL+ +R QA A + Sbjct: 155 LTPRELEVLELIAQGLINKEIAKRLFISEKTVKNHVSNIFKKLNVSDRTQAAIYAYKH 212 >gi|320325287|gb|EFW81354.1| autoinducer transcriptional regulator AhlR [Pseudomonas syringae pv. glycinea str. B076] Length = 189 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 17/190 (8%) Query: 61 SGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + P+ +++Y D + H + P W+ + + ++ Sbjct: 1 MSNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDF-LKRSAKYQ 59 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLM--LANEVIIEAHGACYQVITDFLELFKKRSS-- 169 +G F + + + + +A +I L K R+ Sbjct: 60 LSSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHE 119 Query: 170 -----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 A L+ RET L+ G + EIAE +S TV ++ + + KL+ QA Sbjct: 120 LFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQA 179 Query: 225 IAKAIRFGYI 234 + KAI G + Sbjct: 180 VYKAINIGMV 189 >gi|167739431|ref|ZP_02412205.1| LuxR family regulatory protein [Burkholderia pseudomallei 14] gi|167911761|ref|ZP_02498852.1| LuxR family regulatory protein [Burkholderia pseudomallei 112] gi|254191335|ref|ZP_04897839.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|157939007|gb|EDO94677.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] Length = 237 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 75/239 (31%), Gaps = 12/239 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 L S+ E ++ A +F + +P + I N+ Sbjct: 5 AEDLLAGLDSARSE-EEAFRSVETAAAALDFEYCAYGLRVPWPLSRPRIETRSNFPEQWK 63 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D L H P++ + +S G A Sbjct: 64 RRYVEAGFLDVDPILAHGRRSQQPVV-----LAETLFASAHQMWVEAQSFGLRFGWAQSS 118 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTE 176 + G + + + ++ + + R LTE Sbjct: 119 FDAYGGMGMLALVRSCEPVTAAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTE 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A G + Sbjct: 179 REVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLLS 237 >gi|271967187|ref|YP_003341383.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510362|gb|ACZ88640.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 227 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR-------- 172 L +G+++ L + + A G V L+ F R +A Sbjct: 99 LRAGASGFLLKDVPPDELVQAIRVVAAGDAIVAPSVTRRLLDRFGARLPSAHQQPTPARL 158 Query: 173 -NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L+L G ++ EIA +L +S TV ++G+ KL +R+QA+ A Sbjct: 159 DRLTEREMEVLRLIARGMSNAEIAAELVVSETTVKTHVGNVLTKLGLRDRVQAVVLAYET 218 Query: 232 GYIC 235 G I Sbjct: 219 GLIT 222 >gi|138896712|ref|YP_001127165.1| two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196249414|ref|ZP_03148112.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|134268225|gb|ABO68420.1| Two-component response regulator [Geobacillus thermodenitrificans NG80-2] gi|196211171|gb|EDY05932.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] Length = 225 Score = 115 bits (289), Expect = 4e-24, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSS------- 169 L GY++ + L V I A G Y +I ++ L + +S Sbjct: 95 LQTGATGYLLKEMDADTLIEAVRIVAEGGSYLHPKVTHNLIREYRRLTTETNSNVMVQQE 154 Query: 170 ---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE LQL DG ++ I E L +S TV ++ S KL+ +R QA+ Sbjct: 155 VRRPLHLLTRRECEVLQLLADGKSNRAIGETLYISEKTVKNHVSSILQKLNVNDRTQAVV 214 Query: 227 KAIRFGYI 234 AI+ G++ Sbjct: 215 VAIKNGWV 222 >gi|302867524|ref|YP_003836161.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302570383|gb|ADL46585.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 219 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKR--SSAARNL 174 L +G+++ + L + + A GA Q++ + + + A L Sbjct: 99 LRAGASGFLLKDAPPAQLLHGIRTVASGAALLAPEVTRQLVGRYAARIRPAEGTPADVGL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L DG + EIA +L +S TV Y+ KLD +R+QA+ A R G + Sbjct: 159 TPRELEVLRLIADGLANSEIAARLVISQETVKTYVSRILTKLDLRDRVQAVVYAYRTGLV 218 Query: 235 C 235 Sbjct: 219 T 219 >gi|226314987|ref|YP_002774883.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226097937|dbj|BAH46379.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 235 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 23/135 (17%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN-- 173 L +GY++ L + V + A G Y ++I +F L ++ +A R+ Sbjct: 99 TLRAGASGYLLKEMGTSDLVDAVRVVASGGAYIHPKVTGKLIEEFRRLSEQEGTAERSFS 158 Query: 174 --------------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 LT RE LQL +G ++ I E L +S TV ++ S KL+ Sbjct: 159 VDESQAIDPKVIESLTRREREVLQLMAEGKSNRAIGEFLFISEKTVKNHVSSILQKLNVQ 218 Query: 220 NRIQAIAKAIRFGYI 234 +R QA+ +I+ G++ Sbjct: 219 DRTQAVVISIKNGWV 233 >gi|83594724|ref|YP_428476.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577638|gb|ABC24189.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 260 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 44/216 (20%), Positives = 72/216 (33%), Gaps = 20/216 (9%) Query: 40 SALDFPRRQQLICELH----NYDLDSGDIPNILIETYG-------DDFLFHFNSGLLPII 88 + L FP + L + + E Y D L LP + Sbjct: 34 ARLGFPHSCYHVVRLEGAGARLPYVLHNYKDSWSEHYFREGFLEIDPVLATCPDRQLPFL 93 Query: 89 WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE 148 W + + G + P+R + V E A +I Sbjct: 94 WSEAIAPESLSHDQRRMFSDARDAGLHDGYSVPIRGSHGEFATVTVIPEQGGDAARRLIG 153 Query: 149 AHGACYQVITDFLELFKK------RSSAARN---LTERETSCLQLAGDGYTSEEIAEKLG 199 ++ + + + R S+ R L+ RE L+ A G TS EIAE G Sbjct: 154 EQKHLVHLLALYFDRHARSTVINARLSSRRRKTVLSPREQEMLRWAALGKTSWEIAEIAG 213 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +S +V +L +A KL ++ A+ KA+ G + Sbjct: 214 ISTKSVEFHLDNAKKKLGTYSKTHAVVKALTLGLVT 249 >gi|56413135|ref|YP_150210.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362061|ref|YP_002141698.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127392|gb|AAV76898.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093538|emb|CAR59000.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 240 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ ++ +++ L R++ F Y + P + I P Sbjct: 15 LRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKI-------SLRTTYP 64 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y + F + L P + + V+ Q G+ V Sbjct: 65 QAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124 Query: 124 LGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L G++ F+ L + +EV + + ++ A ++RE Sbjct: 125 LPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|161613489|ref|YP_001587454.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168244797|ref|ZP_02669729.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168462512|ref|ZP_02696443.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822990|ref|ZP_02834990.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194445102|ref|YP_002041215.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448751|ref|YP_002046001.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197250905|ref|YP_002146073.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204931037|ref|ZP_03221863.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|207856536|ref|YP_002243187.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238912477|ref|ZP_04656314.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|161362853|gb|ABX66621.1| hypothetical protein SPAB_01206 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194403765|gb|ACF63987.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407055|gb|ACF67274.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195634505|gb|EDX52857.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197214608|gb|ACH52005.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204320081|gb|EDZ05286.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205336361|gb|EDZ23125.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205340659|gb|EDZ27423.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708339|emb|CAR32642.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|320085432|emb|CBY95213.1| Regulatory protein sdiA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 240 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ ++ +++ L R++ F Y + P + I P Sbjct: 15 LRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKI-------SLRTTYP 64 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y + F + L P + + V+ Q G+ V Sbjct: 65 PAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124 Query: 124 LGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L G++ F+ L + +EV + + ++ A ++RE Sbjct: 125 LPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|53725659|ref|YP_102421.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei ATCC 23344] gi|121600864|ref|YP_993677.1| ATP-dependent transcription regulator LuxR [Burkholderia mallei SAVP1] gi|126442199|ref|YP_001059696.1| ATP-dependent transcription regulator LuxR [Burkholderia pseudomallei 668] gi|126451641|ref|YP_001066980.1| ATP-dependent transcription regulator LuxR [Burkholderia pseudomallei 1106a] gi|134277810|ref|ZP_01764525.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|217421088|ref|ZP_03452593.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226200000|ref|ZP_03795550.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237813089|ref|YP_002897540.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238562977|ref|ZP_00439585.2| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|254177786|ref|ZP_04884441.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|254184304|ref|ZP_04890894.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1655] gi|254199322|ref|ZP_04905688.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|254205635|ref|ZP_04911987.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|254261005|ref|ZP_04952059.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254296964|ref|ZP_04964417.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|254357791|ref|ZP_04974064.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|52429082|gb|AAU49675.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 23344] gi|121229674|gb|ABM52192.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei SAVP1] gi|126221692|gb|ABN85198.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] gi|126225283|gb|ABN88823.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|134251460|gb|EBA51539.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|147748918|gb|EDK55992.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei FMH] gi|147753078|gb|EDK60143.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei JHU] gi|148026918|gb|EDK84939.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei 2002721280] gi|157806879|gb|EDO84049.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|160698825|gb|EDP88795.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei ATCC 10399] gi|184214835|gb|EDU11878.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1655] gi|217396500|gb|EEC36517.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225928056|gb|EEH24093.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237504732|gb|ACQ97050.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238521581|gb|EEP85031.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia mallei GB8 horse 4] gi|254219694|gb|EET09078.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 241 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 75/239 (31%), Gaps = 12/239 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 L S+ E ++ A +F + +P + I N+ Sbjct: 9 AEDLLAGLDSARSE-EEAFRSVETAAAALDFEYCAYGLRVPWPLSRPRIETRSNFPEQWK 67 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D L H P++ + +S G A Sbjct: 68 RRYVEAGFLDVDPILAHGRRSQQPVV-----LAETLFASAHQMWVEAQSFGLRFGWAQSS 122 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTE 176 + G + + + ++ + + R LTE Sbjct: 123 FDAYGGMGMLALVRSREPVTAAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTE 182 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A G + Sbjct: 183 REVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLLS 241 >gi|260431508|ref|ZP_05785479.1| autoinducer-binding transcriptional regulator LuxR [Silicibacter lacuscaerulensis ITI-1157] gi|260415336|gb|EEX08595.1| autoinducer-binding transcriptional regulator LuxR [Silicibacter lacuscaerulensis ITI-1157] Length = 239 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 82/238 (34%), Gaps = 29/238 (12%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 SS+L EL ++N +K N + ++ A D + + Sbjct: 17 SSTLDELGAVAERLRNALKIDNIVYHWVDGAGDQ--------------YGCTTYSDSWAQ 62 Query: 71 TY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 Y D + P+ W+S+ ++ + G + P+R Sbjct: 63 RYRERNYHRIDPVILGCFQRFHPVDWKSLDWSG--KAVRAFLQDALEHGVGNQGFSIPIR 120 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK------KRSSAARNLTER 177 + + I +G +I + +R + R L+ R Sbjct: 121 GPNGQFALFTANHSCSDAEWQNFIAKYGRDLILIAHYFNRKALEFEQNRRPDSPRALSPR 180 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E + L GY+ ++A L +S HT+ Y+ SA KL A+N AIA A+ G I Sbjct: 181 EIDAMTLLALGYSRAQVAHSLSISEHTLRVYIESARAKLGALNTTHAIATALSRGLIV 238 >gi|322835285|ref|YP_004215311.1| LuxR family transcriptional regulator [Rahnella sp. Y9602] gi|321170486|gb|ADW76184.1| transcriptional regulator, LuxR family [Rahnella sp. Y9602] Length = 251 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 17/188 (9%) Query: 62 GDIPNILIET--YGDDFLFHF-NSGLLPIIWQ-----SIQEETVIESSGQLSVRLEGGLL 113 GD+ + +E Y D + H+ P +W + + + + Sbjct: 64 GDMQRLWLENGYYQVDPVQHYALESCAPFVWSYQRPDNTSLQNRLSDLNKPVTHYMCDNN 123 Query: 114 PFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 +G P+ L G+V T + ++V+ E LF Sbjct: 124 MPSGATVPLHLPNG--GFVTVTGIHTGAGHELDIHDVLAELSLLALTFQECVFPLFDSSI 181 Query: 169 SAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ L++RE CL A +G T++EIA KL S+ TV +L +A KL A NR+QA+ Sbjct: 182 LTCRHVRLSKRERECLTWAAEGLTAKEIARKLNRSIATVTLHLNTAARKLGASNRVQAVV 241 Query: 227 KAIRFGYI 234 +A+ + + Sbjct: 242 RAMHYRLL 249 >gi|168239186|ref|ZP_02664244.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735895|ref|YP_002114983.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|198243442|ref|YP_002215136.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|194711397|gb|ACF90618.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288026|gb|EDY27413.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197937958|gb|ACH75291.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|322616943|gb|EFY13851.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618183|gb|EFY15075.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625853|gb|EFY22672.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626305|gb|EFY23115.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632720|gb|EFY29465.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639062|gb|EFY35755.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640503|gb|EFY37156.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645988|gb|EFY42505.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649891|gb|EFY46312.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655499|gb|EFY51807.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660277|gb|EFY56515.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662958|gb|EFY59165.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668143|gb|EFY64302.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674097|gb|EFY70191.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675550|gb|EFY71624.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683038|gb|EFY79054.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686732|gb|EFY82710.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195379|gb|EFZ80559.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199270|gb|EFZ84365.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204435|gb|EFZ89441.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207525|gb|EFZ92473.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211850|gb|EFZ96681.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217510|gb|EGA02229.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219586|gb|EGA04070.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223588|gb|EGA07903.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231532|gb|EGA15645.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235975|gb|EGA20054.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240545|gb|EGA24588.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245437|gb|EGA29437.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250207|gb|EGA34099.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253982|gb|EGA37806.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255491|gb|EGA39252.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262088|gb|EGA45651.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266211|gb|EGA49701.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270680|gb|EGA54121.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326622885|gb|EGE29230.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 240 Score = 115 bits (288), Expect = 5e-24, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ ++ +++ L R++ F Y + P + I P Sbjct: 15 LRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKI-------SLRTTYP 64 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y + F + L P + + ++ Q G+ V Sbjct: 65 PAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDMLFHEAQAMWDAAQRFGLRRGVTQCVM 124 Query: 124 LGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L G++ F+ L + +EV + + ++ A ++RE Sbjct: 125 LPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|315654640|ref|ZP_07907546.1| two component system response regulator [Mobiluncus curtisii ATCC 51333] gi|315491104|gb|EFU80723.1| two component system response regulator [Mobiluncus curtisii ATCC 51333] Length = 254 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 18/130 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR-------- 172 L +G+++ ++ L + AHG +V LE+F + + Sbjct: 124 LRAGASGFLLKDAKPEELIGAIRNVAHGDATISPRVTKRMLEMFAPQLPGEQDEAEETNL 183 Query: 173 -------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +LT+RET L L G T++EIA +L +S+ TV ++G+ K+ A +R+QA+ Sbjct: 184 VDKALLDSLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARDRVQAV 243 Query: 226 AKAIRFGYIC 235 A G + Sbjct: 244 IFAYENGLVS 253 >gi|284034837|ref|YP_003384768.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283814130|gb|ADB35969.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 219 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK--KRSSAARNL 174 L +G+++ + L + A GA Q++ + + + + A L Sbjct: 99 LRAGASGFLLKDAPASQLLQGIRTVAGGAALLAPEVTRQLVGRYAARVRPAENAPAEVPL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L DG ++ EIA L +S TV Y+ KLD +R+QA+ A R G + Sbjct: 159 TPRELEVLLLMADGLSNSEIAATLVISHETVKTYVSRILTKLDLRDRVQAVVYAYRRGLV 218 Query: 235 C 235 Sbjct: 219 T 219 >gi|299529754|ref|ZP_07043189.1| transcriptional regulator, luxR family protein [Comamonas testosteroni S44] gi|298722272|gb|EFI63194.1| transcriptional regulator, luxR family protein [Comamonas testosteroni S44] Length = 239 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 69/226 (30%), Gaps = 7/226 (3%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + SL + + + + F L++ +SA D + E + + + Sbjct: 19 ARSLAAIQDTVRAVGAPLGYDRFVLFSASSARDDAVERIYWIEGDWFGTGAPVDAETYVR 78 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 H P W +T + SV G+ PV G Sbjct: 79 HC--PVTRHILETNQPFFWT----KTNGAQGERYSVVRAPQGPGIHGLQVPVFGLLGLEG 132 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGY 189 + E + + + + L + L++RE L G Sbjct: 133 AMSLGGERIDASPQARLALELIAQTAFRTARRLLELPAQEELGPLSDREREVLAWTAAGR 192 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 EIA LGLS TV +L +L QAI AIR G I Sbjct: 193 RQTEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRMAIRNGEIV 238 >gi|172040517|ref|YP_001800231.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] gi|171851821|emb|CAQ04797.1| two-component system response regulator [Corynebacterium urealyticum DSM 7109] Length = 234 Score = 115 bits (287), Expect = 6e-24, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 49/111 (44%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ + + + + A G +L + ++ LT RE L L Sbjct: 124 SAGAVGYLLKDAPPSKVLDGIRRAARGESVMAPEIMGKLMGQMTNPTEALTPRELEVLAL 183 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G+G ++ +IA L L+ TV ++L KL A NR A+A A + G I Sbjct: 184 VGEGKSNRDIARHLVLTEATVKSHLSHVFRKLGANNRTSAVAVARQRGIIA 234 >gi|307328232|ref|ZP_07607410.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886066|gb|EFN17074.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 219 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L +G+++ + L + + A GA Q++ + + R L Sbjct: 99 LRAGASGFLLKDAPPSQLLHGIRTVATGAALLDPEVTRQLVGTYAARIRPAEGPPRDIPL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L +G ++ EIA L +S TV ++ KL +R+QA+ A R G + Sbjct: 159 TPRELEVLRLIANGLSNSEIAATLVISQETVKTFVSRILAKLGLRDRVQAVVYAYRQGLV 218 Query: 235 C 235 Sbjct: 219 T 219 >gi|192360157|ref|YP_001981723.1| putative two-component transcriptional regulator, LuxR family [Cellvibrio japonicus Ueda107] gi|190686322|gb|ACE84000.1| putative two-component transcriptional regulator, LuxR family [Cellvibrio japonicus Ueda107] Length = 238 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 44/234 (18%), Positives = 87/234 (37%), Gaps = 15/234 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++++ + + +L + + F + D PR ++ + P + Sbjct: 9 ETNNSKNIQSLFNLFEKYMSDIGFDRVILGLMTDHPRLKK-----EAEHGFLKNYPADWV 63 Query: 70 ETYGDDFLFHFN-------SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 E Y D H + + W ++ + + F G+ + Sbjct: 64 ERYFDQKYVHIDPVRHKAYDAIGAYTWDELKASMQLSNKQIQMFNEAEDARLFNGVGVSM 123 Query: 123 RLGFHKNGYVIFTSE--FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 R V L +++ A+ Q T + L +K+ +LT +E Sbjct: 124 RGPGGAIAAVGAACSVKNGNLNKDILDAANLMSVQFYTCYWRLMEKK-VTLVHLTAKEQE 182 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + GYT +IA KL +SVHTV+ ++ + KL+A N A+++A+ I Sbjct: 183 ILTWSAAGYTKSQIAHKLCISVHTVDFHVRNCLAKLEAQNITHAVSRALNLSLI 236 >gi|218463347|ref|ZP_03503438.1| transcriptional regulator, LuxR family protein [Rhizobium etli Kim 5] Length = 240 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 54/180 (30%), Gaps = 2/180 (1%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLP 114 N+ + D + + P + + L Sbjct: 60 NWPAEMVDYYDAHNLMIDSPVIRRMMRSTSPFNYDVEAINTNRGGGKKSTVIELFNRYGM 119 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 G FPV G + + + + + + +L Sbjct: 120 EKGAYFPVHDAAGGRGSMSISGSR-NFSMIEMAKLLFIATLIYDRLSQLTLNEKHKPIEF 178 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T E CL+L G EIA+ L L+ + VN ++GS KL R QA+ A+R I Sbjct: 179 TRSELDCLRLTAGGRKGNEIAKLLDLTENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 238 >gi|86358518|ref|YP_470410.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] gi|86282620|gb|ABC91683.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] Length = 260 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 15/189 (7%) Query: 58 DLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 P+ + Y D + LP W ++ E+ L + Sbjct: 73 PFVRTTYPDAWVSRYLLNSYVKVDPIVKQGFERQLPFDWSEVE--PTPEAYAMLVDAQKH 130 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFK 165 G+ G + PV + + + E+ L E + + + Sbjct: 131 GIGG-NGYSIPVADKAQRRALLSLNARIPADEWSELVRRCRNEWIEIAHLIHRKAVYELH 189 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + L+ RE CL G ++I+ LG+S HT YL +A KL A Sbjct: 190 GENDPVPTLSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAA 249 Query: 226 AKAIRFGYI 234 ++A++ I Sbjct: 250 SRAVQLRII 258 >gi|297531388|ref|YP_003672663.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297254640|gb|ADI28086.1| two component transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 224 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L GY++ + L V I A G Y +I ++ L ++ A Sbjct: 95 LQTGATGYLLKEMDADTLIEAVRIVAEGGSYLHPKVTHNLIREYRRLTTEKGGAVVKQEV 154 Query: 174 ------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE LQL DG ++ I L +S TV ++ S KL+ +R QA+ Sbjct: 155 RRPLHLLTRRECEVLQLLADGKSNRAIGGALYISEKTVKNHVSSILQKLNVNDRTQAVVV 214 Query: 228 AIRFGYI 234 AI+ G++ Sbjct: 215 AIKNGWV 221 >gi|53719957|ref|YP_108943.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243] gi|52210371|emb|CAH36350.1| LuxR family regulatory protein [Burkholderia pseudomallei K96243] gi|156105364|gb|ABU49181.1| BpsR5 [Burkholderia pseudomallei] Length = 241 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 75/239 (31%), Gaps = 12/239 (5%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 L S+ E ++ A +F + +P + I N+ Sbjct: 9 AEDLLAGLDSARSE-EEAFRSVETAAAALDFEYCAYGLRVPWPLSRPRIETRSNFPEQWK 67 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D L H P++ + +S G A Sbjct: 68 RRYVEAGFLDVDPILAHGRRSQQPVV-----LAETLFASAHQMWVEAQSFGLRFGWAQSS 122 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTE 176 + G + + + ++ + + R LTE Sbjct: 123 FDAYGGMGMLALVRSCEPVTAAELDAKEYRMRWLVRTAHAALGRMMLPKLMADPERGLTE 182 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+ A DG TS EI++ L +SV TVN ++ +A +KL N+ A+ +A G + Sbjct: 183 REVEVLKWAADGKTSGEISKILAISVDTVNFHVKNAILKLRTANKTAAVVRAAMLGLLS 241 >gi|110633760|ref|YP_673968.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110284744|gb|ABG62803.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 241 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 66/190 (34%), Gaps = 15/190 (7%) Query: 57 YDLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 Y +P+ I Y D + S L P W ++ + E + Sbjct: 53 YPYVRTTLPSQWISRYVLRTYVGHDPVMREGFSSLRPFSWHELE---MSEKEREFMEDAR 109 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-----LF 164 + G + P F + + T++ + I H + I+ L Sbjct: 110 SHGIGAQGYSIPTVDRFSRRSLLSLTADLDLGLWAGFIRRHASSVIEISQVLHQKALNEL 169 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + L RE CL G S++IA L LS +TV +YL +A KL QA Sbjct: 170 GIGEPSGATLAPRERECLLWTARGKDSKDIAGILDLSEYTVRSYLRTARQKLQCRTLSQA 229 Query: 225 IAKAIRFGYI 234 +A A R I Sbjct: 230 VATATRQRII 239 >gi|27802473|gb|AAO21111.1| BisR [Rhizobium leguminosarum bv. viciae] Length = 246 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 16/200 (8%) Query: 48 QQLICELHNYDLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIES 100 + I + + P+ + Y D + S LP W+ I + +S Sbjct: 44 ARTIVDSVDAPFVRTTYPDSWVSRYLLNDYINVDPIIREGFSRQLPFDWREID---IPDS 100 Query: 101 SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQ 155 + Q V E + G++ P+ + + + S E+ + + + E + Sbjct: 101 AHQFMVDAEMHGIGGNGVSIPI-VDKSRRSLLSINSQMSDEEWTAIERQFLPEWTELGFL 159 Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + L RE CL A G S++IAE LGLS HT YL SA K Sbjct: 160 LHRKAVFELHGENDPVPALGTREVECLHWASRGKDSKDIAEILGLSEHTARGYLKSARYK 219 Query: 216 LDAVNRIQAIAKAIRFGYIC 235 L AIA A+ I Sbjct: 220 LGCPTLSAAIAHAVHLNLIT 239 >gi|306842528|ref|ZP_07475179.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2] gi|306287384|gb|EFM58864.1| Transcriptional activator, LUXR family protein [Brucella sp. BO2] Length = 171 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 68/169 (40%), Gaps = 14/169 (8%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D L + + P+IW +S GI+ P G + Sbjct: 9 DPLLRRGVNSIDPLIWS-----QNFFASAPQIWADAVKYGLKVGISQPCWAAQGVFGLLS 63 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RNLTERETSCLQLA 185 F L I Q++T+ L L +++ A +LT RE L+ Sbjct: 64 FVRAGPALTPGEISMLR-RQLQMVTNLLHLSMYERVDVPAISCIGDVSLTLREREILRWT 122 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG + Sbjct: 123 SEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGLL 171 >gi|261420594|ref|YP_003254276.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319768265|ref|YP_004133766.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261377051|gb|ACX79794.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317113131|gb|ADU95623.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 224 Score = 115 bits (287), Expect = 7e-24, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L GY++ + L V I A G Y +I ++ L ++ A Sbjct: 95 LQTGAAGYLLKEMDADTLIEAVRIVAEGGSYLHPKVTHNLIREYRRLTTEKGGAVVKQEV 154 Query: 174 ------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE LQL DG ++ I E L +S TV ++ S KL +R QA+ Sbjct: 155 RRPLHLLTRRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSSILQKLSVNDRTQAVVV 214 Query: 228 AIRFGYI 234 AI+ G++ Sbjct: 215 AIKNGWV 221 >gi|170743557|ref|YP_001772212.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168197831|gb|ACA19778.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 245 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 63/183 (34%), Gaps = 8/183 (4%) Query: 61 SGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 +G P+ Y D + W + + + + G Sbjct: 63 AGTYPDEWARRYYARDYILHDPVVRGVGERGSGFAWSDPGLCAPDDRAARRVLDEAGEFG 122 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-AR 172 G P+ V F E L L+ V + L L K + A Sbjct: 123 LREGFTLPLLTLEGDTAGVSFVGEKLDLSPAVRGMLTLVGTYALGQVLLLAKGETGPLAE 182 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE LQ A DG + +EIA+ +G+S H +L + KL +R A+A +R G Sbjct: 183 PLSPRERESLQWAADGKSDQEIADAMGISAHGAIRHLRAVRRKLGTTSRAHAVALGLRLG 242 Query: 233 YIC 235 I Sbjct: 243 IIS 245 >gi|156933489|ref|YP_001437405.1| DNA-binding transcriptional activator SdiA [Cronobacter sakazakii ATCC BAA-894] gi|156531743|gb|ABU76569.1| hypothetical protein ESA_01307 [Cronobacter sakazakii ATCC BAA-894] Length = 241 Score = 115 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 61/184 (33%), Gaps = 16/184 (8%) Query: 63 DIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 P +E Y D L N + P+ W + + + + Sbjct: 62 TYPEAWLEHYQAENYYVIDPVLKPANYLVGPLSWN----DALFAGAAEELWNAARDHGLV 117 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-- 173 G+ V G++ + + E ++ L + A Sbjct: 118 KGVTQCVIAPNRAQGFLSVSGTSPRGHSMADDELALRLQHLVEQSLVTMMRLEDPAATVL 177 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE LQ +G TS EIA L +S +TVN + + K +A N+ Q A Sbjct: 178 EMKLSKREKEILQWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAA 237 Query: 231 FGYI 234 G I Sbjct: 238 IGLI 241 >gi|260598411|ref|YP_003210982.1| DNA-binding transcriptional activator SdiA [Cronobacter turicensis z3032] gi|260217588|emb|CBA31841.1| Regulatory protein sdiA [Cronobacter turicensis z3032] Length = 241 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 16/184 (8%) Query: 63 DIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 P +E Y D L N + P+ W + + + + Sbjct: 62 TYPEAWLEHYQAENYFVIDPVLKPANYLIGPLSWN----DALFAGAAEELWNAARDHGLV 117 Query: 116 AGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 G+ V G++ + M +E+ + Q + + L ++ Sbjct: 118 KGVTQCVIAPNRAQGFLSVSGTSPRGHSMPDDELALRLQHLVEQSLVAMMRLEDPAATVL 177 Query: 172 R-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE LQ +G TS EIA L +S +TVN + + K +A N+ Q A Sbjct: 178 EMKLSKREKEILQWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAA 237 Query: 231 FGYI 234 G I Sbjct: 238 IGLI 241 >gi|297153818|gb|ADI03530.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 219 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L +G+++ + L + + A GA +++ ++ + +R L Sbjct: 99 LRAGASGFLLKEAPPSQLLHGIRTVATGAALLDPEVTRRLVGTYVARIRPAEDTSRDIPL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L DG+++ EIA L +S TV ++ KLD +R+QA+ A R G + Sbjct: 159 TPRELEVLRLIADGFSNSEIAAALQISPETVKTFVSRILTKLDLRDRVQAVVYAYRQGLV 218 Query: 235 C 235 Sbjct: 219 T 219 >gi|199597190|ref|ZP_03210622.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|258508705|ref|YP_003171456.1| two-component response regulator [Lactobacillus rhamnosus GG] gi|199591994|gb|EDZ00069.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|257148632|emb|CAR87605.1| Two-component response regulator [Lactobacillus rhamnosus GG] gi|259650011|dbj|BAI42173.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 221 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETSCL 182 Y++ T+ +A + A G QV T + S LT RE L Sbjct: 96 AGAASYILKTATAEEIAKAIRQTASGERVLEPQVTTKMMNRMNHPQSQYDELTNREREVL 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QL G +++EIA +L +++ TV ++ + KLD +R QA A++ G + Sbjct: 156 QLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHGLV 207 >gi|298346055|ref|YP_003718742.1| LuxR family response regulator [Mobiluncus curtisii ATCC 43063] gi|315657448|ref|ZP_07910330.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298236116|gb|ADI67248.1| LuxR family response regulator [Mobiluncus curtisii ATCC 43063] gi|315491920|gb|EFU81529.1| exopolyphosphatase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 248 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 18/130 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR-------- 172 L +G+++ ++ L + AHG +V LE+F + + Sbjct: 118 LRAGASGFLLKDAKPEELIGAIRNVAHGDATISPRVTKRMLEMFAPQLPGEQDEVEEANL 177 Query: 173 -------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +LT+RET L L G T++EIA +L +S+ TV ++G+ K+ A +R+QA+ Sbjct: 178 VDKALLDSLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARDRVQAV 237 Query: 226 AKAIRFGYIC 235 A G + Sbjct: 238 IFAYENGLVS 247 >gi|260461687|ref|ZP_05809933.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319785241|ref|YP_004144717.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032328|gb|EEW33593.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317171129|gb|ADV14667.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 241 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 10/226 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYT-INSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ S + + + A +F L+ + R+ +LI NY Sbjct: 10 EQLSESVDAVDLCETMASAAAALDFPLFAYFSCPSASGRKPRLI---SNYPPSWTSRYMQ 66 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 L D + G W + ++ Q + G+ + Sbjct: 67 LRYHRHDPVILRGLQGWDTFDWGVDLARQHLPAAQQRILEEAARFGIRCGLTMSMHDHRG 126 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTERETSC 181 + + S+ + + Q++ +F +R A LT RE C Sbjct: 127 RFAALTLASDQSRPPLLRSLSRYEQALQLVAISFHIFARRRLAEDCVVDGVILTPREFEC 186 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ A DG ++ +I++ L +S TV +L +A KL QA+A+ Sbjct: 187 LKWAADGKSAWDISQILSVSKRTVTFHLENAKAKLGVRTINQAVAR 232 >gi|1730567|sp|P54303|PHZR_PSECL RecName: Full=Transcriptional activator protein phzR gi|496217|gb|AAA21841.1| positive regulatory protein [Pseudomonas chlororaphis subsp. aureofaciens] Length = 241 Score = 114 bits (286), Expect = 8e-24, Method: Composition-based stats. Identities = 52/239 (21%), Positives = 77/239 (32%), Gaps = 34/239 (14%) Query: 17 LSPRLHLIQNRIKARN-------FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + R +Q F + P + NY D Sbjct: 16 IFARTMDMQEFTAVALRALRELRFDFFRYGMCSVTPFMRPRTYMYGNYPEDWVQRYQAAN 75 Query: 70 ETYGDDFLFHFNSGLLPII------------WQSIQEETVIESSGQLSVRLEG--GLLPF 115 D + H PI+ W + + Q S +G G+L Sbjct: 76 YAVIDPTVKHSKVSSSPILASNELFRGCPDLWSEANDSNLRHGLAQPSFNTQGRVGVLSL 135 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 A P+ L EF L +V+ +A A LE + + + Sbjct: 136 ARKDNPISL-----------QEFEAL--KVVTKAFAAAVHEKISELESDVRVFNTDVEFS 182 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ DG TSEEI +G+ TVN + + K+ A NR+QA A+ GYI Sbjct: 183 GRECDVLRWTADGKTSEEIGVIMGVCTDTVNYHHRNIQRKIGASNRVQASRYAVAMGYI 241 >gi|258539885|ref|YP_003174384.1| two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|257151561|emb|CAR90533.1| Two-component response regulator [Lactobacillus rhamnosus Lc 705] Length = 221 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETSCL 182 Y++ T+ +A + A G QV T + LT RE L Sbjct: 96 AGAASYILKTATAEEIAKAIRQTASGERVLEPQVTTKMMNRMNHPQPQYDELTNREREVL 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QL G +++EIA +L +++ TV ++ + KLD +R QA A++ G + Sbjct: 156 QLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHGLV 207 >gi|294142230|ref|YP_003558208.1| LuxR family transcriptional regulator [Shewanella violacea DSS12] gi|293328699|dbj|BAJ03430.1| transcriptional regulator, LuxR family [Shewanella violacea DSS12] Length = 250 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 81/230 (35%), Gaps = 9/230 (3%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTI----NSALDFPRRQQLICELHNYDLDSGDIP 65 SSS + +QN ++ AL T+ + +++ R + G+I Sbjct: 25 ASSSNDGIMQCAKTLQNLLEVDGVALITLMIRPDHSINIERVVSSGFGFEAKSAEWGNIY 84 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 Y D + S W S+ + S + + G + Sbjct: 85 QKNKFQYIDPIVSCSKSIRSSFNWTSVPSMMSLSESQLNFLEQAEEMGLKEGASIGSFSS 144 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLTERETSCLQL 184 H + ++ + A ++I + + ++ LT+RE L Sbjct: 145 RH----IYKELNITSVSGRSLNSEQLATLELINTVSAQAMTRLTNPVEELTKREREILAW 200 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +G +S EI ++ TV +L + KL+ NR QAI AIR G I Sbjct: 201 SSEGKSSWEIGMICSITERTVKFHLKNIYKKLNVQNRAQAIVCAIRQGLI 250 >gi|23099974|ref|NP_693440.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22778205|dbj|BAC14475.1| two-component response regulator involved in degradative enzyme [Oceanobacillus iheyensis HTE831] Length = 230 Score = 114 bits (286), Expect = 9e-24, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 18/129 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L GY++ + L + + + + G Y ++ ++ L K+ SS+ + Sbjct: 99 LKTGAQGYLLKEMDSDALIDAIKVVSDGGSYLHPRVTHNLVKEYRRLAKENSSSIADKGI 158 Query: 174 --------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE LQL DG ++ +AE L +S TV ++ + K++ +R QA+ Sbjct: 159 EYRKPLHLLTKRECQVLQLLADGKSNRAVAETLYISEKTVKNHVSNILQKMNVNDRTQAV 218 Query: 226 AKAIRFGYI 234 AIR G++ Sbjct: 219 VSAIRKGWV 227 >gi|282863833|ref|ZP_06272891.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282561534|gb|EFB67078.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 219 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L G+++ + L + A GA Q++ + + AAR L Sbjct: 99 LRAGAGGFLLKDAPPSQLLQGIRTVAAGAALLDPEVTRQLVGRYAARIRPTGDAARDIPL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L DG ++ EIA L +S TV ++ KL +R+QA+ A R G + Sbjct: 159 TPRELEVLRLIADGLSNNEIAAALVISRETVKTFVSRILTKLGLRDRVQAVIYAYRQGLV 218 Query: 235 C 235 Sbjct: 219 T 219 >gi|264678731|ref|YP_003278638.1| transcriptional regulator, luxR family [Comamonas testosteroni CNB-2] gi|262209244|gb|ACY33342.1| transcriptional regulator, luxR family [Comamonas testosteroni CNB-2] Length = 239 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 69/226 (30%), Gaps = 7/226 (3%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + SL + + + + F L++ +SA D + E + + + Sbjct: 19 ARSLAAIQDTVRAVGAPLGYDRFVLFSASSARDDAVERIYWIEGDWFGTGAPVDAETYVR 78 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 H P W +T + SV G+ PV G Sbjct: 79 HC--PVTRHILETNQPFFWT----KTNGAQGERYSVVRAPQGPGIHGLQVPVFGLLGLEG 132 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGY 189 + E + + + + L + L++RE L G Sbjct: 133 AMSLGGERIDASPQARLALELIAQIAFRTARRLLELPAQEELGPLSDREREVLAWTAAGR 192 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 EIA LGLS TV +L +L QAI AIR G I Sbjct: 193 RQTEIAATLGLSERTVENHLRRIRKRLGVATTAQAIRVAIRNGEIV 238 >gi|205352355|ref|YP_002226156.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205272136|emb|CAR36989.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627405|gb|EGE33748.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 240 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ ++ +++ L R++ F Y + P + I P Sbjct: 15 LRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKI-------SLRTTYP 64 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y + F + L P + + V+ Q G+ V Sbjct: 65 PAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEEQAMWDAAQRFGLRRGVTQCVM 124 Query: 124 LGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L G++ F+ L + +EV + + ++ A ++RE Sbjct: 125 LPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|116495146|ref|YP_806880.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|191638654|ref|YP_001987820.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus casei BL23] gi|227534839|ref|ZP_03964888.1| LuxR family response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239632026|ref|ZP_04675057.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066710|ref|YP_003788733.1| CitB family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|116105296|gb|ABJ70438.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] gi|190712956|emb|CAQ66962.1| Regulatory protein, LuxR:Response regulator receiver [Lactobacillus casei BL23] gi|227187595|gb|EEI67662.1| LuxR family response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526491|gb|EEQ65492.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439117|gb|ADK18883.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327382696|gb|AEA54172.1| two component transcriptional regulator, LuxR family [Lactobacillus casei LC2W] gi|327385883|gb|AEA57357.1| two component transcriptional regulator, LuxR family [Lactobacillus casei BD-II] Length = 221 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETSCL 182 Y++ T+ +A + A G QV T + LT RE L Sbjct: 96 AGAASYILKTATAEEIAKAIRQTAKGERVLEPQVTTKMMNRMNHPQPQYDELTNREREVL 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QL G +++EIA +L +++ TV ++ + KLD +R QA A++ G + Sbjct: 156 QLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHGLV 207 >gi|51891787|ref|YP_074478.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855476|dbj|BAD39634.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 214 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 GY++ + L + A G +++ + R A LTERE Sbjct: 97 AGAKGYLLKDAPPQQLLEGIETVARGQSLLSPEIAAKLVQVISQGGPARQEGAEGLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T L+L G ++EIA L +S +TV ++ + KL A +R +A+ KA+ G++ Sbjct: 157 TEILRLIASGAANKEIAAALFISENTVKTHISNLFQKLGARDRTEAVTKALARGWL 212 >gi|220921758|ref|YP_002497059.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219946364|gb|ACL56756.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 244 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 69/191 (36%), Gaps = 16/191 (8%) Query: 61 SGDIPNILIETYGDDFLFHF--NSGLL--PII-----------WQSIQEETVIESSGQLS 105 P + I TY D++ + + +L P++ W + + Sbjct: 54 CDRRPTVFIGTYPDEWARRYYARNYILHDPVVRGVAERASGFAWTDPDLIASDDREARRV 113 Query: 106 VRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK 165 + G G P+ V F E L L+ V + L L Sbjct: 114 LDEAGEFGLHEGFTLPLLTLEGDTAGVSFVGERLDLSPAVRGMLTLVGTYALGQVLLLAN 173 Query: 166 KRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ A + L+ RE LQ A DG + EI E +G+S H +L + KL +R A Sbjct: 174 GQAEALSEPLSPRERESLQWAADGKSDWEIGEAMGISEHGAIRHLRAVRRKLGTTSRAHA 233 Query: 225 IAKAIRFGYIC 235 +A +R G I Sbjct: 234 VALGLRLGIIS 244 >gi|294501833|ref|YP_003565533.1| two-component response regulator DegU [Bacillus megaterium QM B1551] gi|295707182|ref|YP_003600257.1| two-component response regulator DegU [Bacillus megaterium DSM 319] gi|126540400|emb|CAL44587.1| DegU protein [Bacillus megaterium DSM 319] gi|294351770|gb|ADE72099.1| two-component response regulator DegU [Bacillus megaterium QM B1551] gi|294804841|gb|ADF41907.1| two-component response regulator DegU [Bacillus megaterium DSM 319] Length = 227 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 19/130 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L GY++ + L V + A G Y ++ ++ L + S++ Sbjct: 95 LQTGARGYLLKEMDADALIEAVKVVAEGGSYLHPKVTHSLVKEYRRLAAQGQSSSYPHEP 154 Query: 174 ---------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE LQL DG ++ I E L +S TV ++ + K++ +R QA Sbjct: 155 IEIRRPLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQA 214 Query: 225 IAKAIRFGYI 234 + AI+ G++ Sbjct: 215 VVVAIKNGWV 224 >gi|329941415|ref|ZP_08290694.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299946|gb|EGG43845.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 226 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L +G+++ + L + + A GA Q++ + + A L Sbjct: 106 LRAGASGFLLKDAPPDRLLHGIRTVAMGAALLDPDVTRQLVGRYATRIRPTDGAPEDIPL 165 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+L DG ++ EIA L +S TV ++ KL+ +R+QA+ A R G Sbjct: 166 TPRELEVLRLIADGLSNSEIAATLVISQETVKTFVSRILTKLNLRDRVQAVVYAFRHGL 224 >gi|15967032|ref|NP_387385.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15076305|emb|CAC47858.1| Putative transcription regulator [Sinorhizobium meliloti 1021] Length = 184 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 59/171 (34%), Gaps = 9/171 (5%) Query: 74 DDFLFHFNSGLLPIIWQS--IQEETVIESSGQLSVRLEGG-LLPFAGIAFPVRLGFHKNG 130 D + W+ + + S+ +E F G FPV G Sbjct: 14 DPTIRFLGHAQRGFRWRDTLVAFRSDPHRKRMESMMVEARNHGLFDGYIFPVHGRRGLMG 73 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTERETSCLQL 184 + + L+ + ++ LEL S +T RE L Sbjct: 74 NLTVGGRVVDLSPVELSLFDAIAKRLFWKLLELTDPEIMAELVSRVEVQMTRREMEALHY 133 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 DG TS +I + L +S HTV+ Y+ KL A NR +A A R G I Sbjct: 134 LADGMTSNDIGKVLDISSHTVDWYMNGIQEKLKAKNRHHVVAIAFRLGLIS 184 >gi|304390186|ref|ZP_07372140.1| two component system response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326668|gb|EFL93912.1| two component system response regulator [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 248 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 18/130 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR-------- 172 L +G+++ ++ L + AHG +V LE+F + + Sbjct: 118 LRAGASGFLLKDAKPEELIGAIRNVAHGDATISPRVTKRMLEMFAPQLPGEQDEAEEANL 177 Query: 173 -------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +LT+RET L L G T++EIA +L +S+ TV ++G+ K+ A +R+QA+ Sbjct: 178 VDKALLDSLTDRETEVLTLIAQGLTNQEIATQLFISMTTVKTHVGNILNKIGARDRVQAV 237 Query: 226 AKAIRFGYIC 235 A G + Sbjct: 238 IFAYENGLVS 247 >gi|110634656|ref|YP_674864.1| LuxR family transcriptional regulator [Mesorhizobium sp. BNC1] gi|110285640|gb|ABG63699.1| transcriptional regulator, LuxR family [Chelativorans sp. BNC1] Length = 265 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 8/182 (4%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 P Y D + G W I+E + G+ + Sbjct: 84 DGWPEEWKRRYFSLGYLHRDPAIHLVRRGCPHFHWSEIREHCSVCPIGRRIMNEAREFQL 143 Query: 115 FAGIAFPV-RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 AG+ F L G+++ E + ++ A + + + + Sbjct: 144 RAGVTFSFPTLESKTFGFLVAAEELDLAETDLFTLQFVAAFGLGCALTLAGGVVGRSNVH 203 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ R+ + A +G T++EIAE+L +SVHT + +L + +L N + A+A+A+R G Sbjct: 204 LSRRQREVVAWASEGLTADEIAERLNVSVHTADMHLRAVRTRLGVANTVHAVAEALRLGL 263 Query: 234 IC 235 I Sbjct: 264 IS 265 >gi|229552512|ref|ZP_04441237.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1] gi|229314064|gb|EEN80037.1| LuxR family response regulator [Lactobacillus rhamnosus LMS2-1] Length = 233 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETSCL 182 Y++ T+ +A + A G QV T + LT RE L Sbjct: 108 AGAASYILKTATAEEIAKAIRQTASGERVLEPQVTTKMMNRMNHPQPQYDELTNREREVL 167 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QL G +++EIA +L +++ TV ++ + KLD +R QA A++ G + Sbjct: 168 QLIAQGKSNQEIATELFITLKTVKTHVSNILAKLDVEDRTQAAIYALKHGLV 219 >gi|86356800|ref|YP_468692.1| transcriptional regulator protein [Rhizobium etli CFN 42] gi|86280902|gb|ABC89965.1| probable transcriptional regulator protein [Rhizobium etli CFN 42] Length = 240 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 55/180 (30%), Gaps = 2/180 (1%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLP 114 N+ + D + + P + E + L Sbjct: 60 NWPAEMVDYYDAHNLMVDSPVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGM 119 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 G FPV G + + + + + + +L Sbjct: 120 EKGAYFPVHDAAGGRGAMSISGSR-NFSMVEMAKLLFIATLIYDRLSQLTLNEKHKPVAF 178 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ E CL+L G S EIA+ L LS VN +GS KL R QA+ A+R I Sbjct: 179 TQSELDCLRLTAGGRKSSEIAKLLDLSESAVNNQIGSVIRKLGCTTRTQAVVSALRLNII 238 >gi|17548999|ref|NP_522339.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 248 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 79/236 (33%), Gaps = 14/236 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 + +S ++ I+ A F P + + L+NY Sbjct: 20 DIFSDAQASTSDVFEH---IEAAALALGFEHVAYGFKAPLPLSEPKVVLLNNYPQAWRAR 76 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 + D + PI+W + + GL G A Sbjct: 77 YLEAGYLHVDPSVAQACRSQAPIVWS---DRLFQDVPALWDEAKAHGLRV--GWAQSSLD 131 Query: 125 GFHKNGYVIFTSEFLMLANEVIIE------AHGACYQVITDFLELFKKRSSAARNLTERE 178 G + + L+ + E V L + NLT RE Sbjct: 132 SLGVGGMLSLSRSCEPLSARELAENTRRMQWLAHMAHVALSRLLRADVAGYSDDNLTNRE 191 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ DG ++++IA+ L +S +TV+ ++ +A KL AVN+ A+ +A GY+ Sbjct: 192 VEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLHAVNKTAAVVRAAMLGYL 247 >gi|269125776|ref|YP_003299146.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310734|gb|ACY97108.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 220 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 + GY++ S +A V A G +V+T F ++ + +A LTE Sbjct: 101 MRAGARGYLLKESGAEEIARAVRAVAAGEAIYGPEIARRVLTYFADMPDPKQTAFPELTE 160 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE LQL G ++ EIA+ L LS TV ++ + +KL +R QAI A G Sbjct: 161 REREVLQLIAQGRSNGEIAQTLFLSPKTVRNHVSNIFMKLHVADRAQAIVLAREAGL 217 >gi|74311738|ref|YP_310157.1| DNA-binding transcriptional activator SdiA [Shigella sonnei Ss046] gi|82543616|ref|YP_407563.1| DNA-binding transcriptional activator SdiA [Shigella boydii Sb227] gi|157156210|ref|YP_001463220.1| DNA-binding transcriptional activator SdiA [Escherichia coli E24377A] gi|187730097|ref|YP_001879705.1| DNA-binding transcriptional activator SdiA [Shigella boydii CDC 3083-94] gi|193071152|ref|ZP_03052076.1| regulatory protein SdiA [Escherichia coli E110019] gi|194439563|ref|ZP_03071636.1| regulatory protein SdiA [Escherichia coli 101-1] gi|300822312|ref|ZP_07102453.1| autoinducer binding domain protein [Escherichia coli MS 119-7] gi|300917358|ref|ZP_07134027.1| autoinducer binding domain protein [Escherichia coli MS 115-1] gi|73855215|gb|AAZ87922.1| transcriptional regulator of ftsQAZ gene cluster [Shigella sonnei Ss046] gi|81245027|gb|ABB65735.1| transcriptional regulator of ftsQAZ gene cluster [Shigella boydii Sb227] gi|157078240|gb|ABV17948.1| regulatory protein SdiA [Escherichia coli E24377A] gi|187427089|gb|ACD06363.1| regulatory protein SdiA [Shigella boydii CDC 3083-94] gi|192955547|gb|EDV86026.1| regulatory protein SdiA [Escherichia coli E110019] gi|194421472|gb|EDX37486.1| regulatory protein SdiA [Escherichia coli 101-1] gi|300415404|gb|EFJ98714.1| autoinducer binding domain protein [Escherichia coli MS 115-1] gi|300525195|gb|EFK46264.1| autoinducer binding domain protein [Escherichia coli MS 119-7] gi|309702211|emb|CBJ01527.1| regulatory protein [Escherichia coli ETEC H10407] gi|320176080|gb|EFW51148.1| DNA-binding transcriptional activator SdiA [Shigella dysenteriae CDC 74-1112] gi|323165288|gb|EFZ51076.1| regulatory protein sdiA [Shigella sonnei 53G] gi|323174570|gb|EFZ60191.1| regulatory protein sdiA [Escherichia coli LT-68] gi|323937191|gb|EGB33471.1| autoinducer binding domain-containing protein [Escherichia coli E1520] gi|323972721|gb|EGB67922.1| autoinducer binding domain-containing protein [Escherichia coli TA007] gi|332343642|gb|AEE56976.1| regulatory protein SdiA [Escherichia coli UMNK88] Length = 240 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAAHAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|21224466|ref|NP_630245.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256784341|ref|ZP_05522772.1| two-component system response regulator [Streptomyces lividans TK24] gi|289768220|ref|ZP_06527598.1| two-component system response regulator [Streptomyces lividans TK24] gi|4007689|emb|CAA22374.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289698419|gb|EFD65848.1| two-component system response regulator [Streptomyces lividans TK24] Length = 219 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L +G+++ + L + + A GA +++ + + AR L Sbjct: 99 LRAGASGFLLKDAPPDRLLHGIRTVAMGAALLDPDVTRRLVGRYAARIRPAEGTARDIPL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RET L+L DG ++ EIA L +S TV ++ KLD +R+QA+ A R G + Sbjct: 159 TPRETEVLRLIADGLSNSEIAAALVISPETVKTFVSRILTKLDLRDRVQAVVFAYRHGLV 218 Query: 235 C 235 Sbjct: 219 T 219 >gi|16765288|ref|NP_460903.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167993519|ref|ZP_02574613.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|2992525|gb|AAC08299.1| SdiA [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420484|gb|AAL20862.1| transcriptional regulator of ftsQAZ gene cluster [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205328435|gb|EDZ15199.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261247116|emb|CBG24939.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993936|gb|ACY88821.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158464|emb|CBW17974.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912940|dbj|BAJ36914.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224593|gb|EFX49656.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130228|gb|ADX17658.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988839|gb|AEF07822.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 240 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 81/236 (34%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ ++ +++ L R++ F Y + P + I P Sbjct: 15 LRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKI-------SLRTTYP 64 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y + F + L P + + V+ + G+ V Sbjct: 65 PAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAKAMWDAAQRFGLRRGVTQCVM 124 Query: 124 LGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L G++ F+ L + +EV + + ++ A ++RE Sbjct: 125 LPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|110678944|ref|YP_681951.1| transcriptional activator protein RaiR, putative [Roseobacter denitrificans OCh 114] gi|109455060|gb|ABG31265.1| Transcriptional activator protein RaiR, putative [Roseobacter denitrificans OCh 114] Length = 239 Score = 114 bits (285), Expect = 1e-23, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 69/192 (35%), Gaps = 19/192 (9%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 G Y D + P+ W+ + + + + G Sbjct: 51 YGYGTYSLEWAARYQEQNYIRVDPVVIGCYQRFHPVDWKRLDWSSKAARALRAEAATYG- 109 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFT-------SEFLMLANEVIIEAHGACYQVITDFLELF 164 L G + P+R + + +FT E+ E E + LE Sbjct: 110 -LGNQGYSIPIRGPNGQ--FALFTVNTSCDDEEWAKFTEENRRELILIAHYFNQKALEFE 166 Query: 165 KKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++ ++ L+ RE + L GY ++AE L +S HT+ Y+ SA KL A N Sbjct: 167 PNKTPEQSQALSPREIDAMTLLAIGYNRAQVAETLSISEHTLRVYIESARFKLGAANTTH 226 Query: 224 AIAKAIRFGYIC 235 A+A+A+ G I Sbjct: 227 AVARALSRGLIV 238 >gi|271964817|ref|YP_003339013.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507992|gb|ACZ86270.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 227 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 7/116 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTER 177 L GYV+ ++ V A G A + I FL S LT+R Sbjct: 111 LRAGARGYVLKGADGNDFIAAVRAVARGEAVYGPAVARRIRRFL-TTGPESGPFPELTQR 169 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L G ++ EIA +L LS TV +L S KL +R QA+ +A R G Sbjct: 170 EREILDLLASGKSNAEIARRLFLSQKTVKNHLTSIFAKLQVADRTQAVVRARRAGL 225 >gi|16078980|ref|NP_389801.1| two-component response regulator DesK [Bacillus subtilis subsp. subtilis str. 168] gi|221309818|ref|ZP_03591665.1| hypothetical protein Bsubs1_10596 [Bacillus subtilis subsp. subtilis str. 168] gi|221314140|ref|ZP_03595945.1| hypothetical protein BsubsN3_10527 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319062|ref|ZP_03600356.1| hypothetical protein BsubsJ_10443 [Bacillus subtilis subsp. subtilis str. JH642] gi|221323336|ref|ZP_03604630.1| hypothetical protein BsubsS_10562 [Bacillus subtilis subsp. subtilis str. SMY] gi|321311560|ref|YP_004203847.1| two-component response regulator DesK [Bacillus subtilis BSn5] gi|81815765|sp|O34723|DESR_BACSU RecName: Full=Transcriptional regulatory protein desR gi|2619014|gb|AAB84438.1| sensor regulator [Bacillus subtilis] gi|2634313|emb|CAB13812.1| two-component response regulator [DesK] [Bacillus subtilis subsp. subtilis str. 168] gi|291484510|dbj|BAI85585.1| hypothetical protein BSNT_03128 [Bacillus subtilis subsp. natto BEST195] gi|320017834|gb|ADV92820.1| two-component response regulator (DesK) [Bacillus subtilis BSn5] Length = 199 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S LAN + +G EL + S A LT+RE L+L Sbjct: 94 AGVKGYLLKDSPSEELANAIRSVMNGKRIYA----PELMEDLYSEANPLTDREKEVLELV 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA++L + TV Y+ KL+ NRI+AI ++ G+ Sbjct: 150 ADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAITRSKEKGW 197 >gi|89095961|ref|ZP_01168855.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89089707|gb|EAR68814.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 227 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 19/130 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L +GY++ + L V + A G Y ++ ++ L + ++ Sbjct: 95 LKTGASGYLLKEMDADALVEAVKVVADGGSYLHPKVTHNLVKEYRRLASDENGSSEGYTQ 154 Query: 174 ---------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LT RE LQL DG ++ I E L +S TV ++ + K++ +R QA Sbjct: 155 VEIRRPLHLLTRRECEVLQLLADGKSNRGIGEALFISEKTVKNHVSNILQKMNVNDRTQA 214 Query: 225 IAKAIRFGYI 234 + AI+ G++ Sbjct: 215 VVVAIKNGWV 224 >gi|116254615|ref|YP_770451.1| putative transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|417645|sp|Q03316|RHIR_RHILV RecName: Full=Regulatory protein rhiR gi|7259800|gb|AAA26360.2| rhiR [Rhizobium leguminosarum] gi|115259263|emb|CAK10396.1| Putative transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] Length = 247 Score = 113 bits (284), Expect = 1e-23, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 72/207 (34%), Gaps = 4/207 (1%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F+ + I+ R L N+ + D + D + + +W Sbjct: 40 GFSYFAISGIPSPIERIDSYFVLGNWSVGWFDRYRENNYVHADPIVHLSKTCDHAFVWSE 99 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA----NEVII 147 + ++ + + G + P+ V F +E + L+ + + + Sbjct: 100 ALRDQKLDRQSRRVMDEAREFKLIDGFSVPLHTAAGFQSIVSFGAEKVELSTCDRSALYL 159 Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 A A + ++ A +T RE + G T+ EIA LG S T+ Sbjct: 160 MAAYAHSLLRAQIGNDASRKIQALPMITTREREIIHWCAAGKTAIEIATILGRSHRTIQN 219 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL+ VN Q IA++ R I Sbjct: 220 VILNIQRKLNVVNTPQMIAESFRLRII 246 >gi|194015561|ref|ZP_03054177.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] gi|194012965|gb|EDW22531.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] Length = 229 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L GY++ + L V + A G Y ++ +F L SA Sbjct: 96 LKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEV 155 Query: 174 ----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQ+ DG ++ I E L +S TV ++ + K++ NR Q Sbjct: 156 YPEIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNNRTQ 215 Query: 224 AIAKAIRFGYI 234 A+ AI+ G++ Sbjct: 216 AVVVAIKNGWV 226 >gi|312959686|ref|ZP_07774203.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas fluorescens WH6] gi|311286403|gb|EFQ64967.1| transcriptional regulator, LuxR family, autoinducer-regulated [Pseudomonas fluorescens WH6] Length = 254 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 87/211 (41%), Gaps = 22/211 (10%) Query: 39 NSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF-NSGLLPIIWQ-----SI 92 + AL P +L ++ Y D + H S + P +W Sbjct: 49 DGALITPSVLELRNTPPDWHALWCG-----KGFYQIDPVQHLALSTVSPFVWSYEAKTDT 103 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA 152 + +I+ G++ P+ L G+ T A+ V+ +A Sbjct: 104 PLQKIIDPCHAPVSSYLHDQQLTCGVSVPIHLPRG--GFASLTGLRTGKASSVLQDAQQT 161 Query: 153 C--YQVITDFLE-----LFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + VI+ L+ LF K R+ +LT+RE CL+ A +G T+ +IA +L S+ Sbjct: 162 LSEFSVISHALQEAAYPLFSKELRTYPYIHLTKRERECLKWAAEGLTAAQIATQLSRSLA 221 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V+ +L SA KL A NR+QA+ +A + + Sbjct: 222 VVSLHLASAMHKLGAKNRVQAVVRATHYRLL 252 >gi|239828352|ref|YP_002950976.1| LuxR family transcriptional regulator [Geobacillus sp. WCH70] gi|239808645|gb|ACS25710.1| two component transcriptional regulator, LuxR family [Geobacillus sp. WCH70] Length = 225 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L GY++ + L V I A G Y +I ++ L ++ Sbjct: 95 LQTGATGYLLKEMDADTLIEAVKIVAEGGSYLHPKVTHNLIREYRRLASEKGENKERKRE 154 Query: 174 -------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE LQL DG ++ I E L +S TV ++ + KL+ +R QA+ Sbjct: 155 VRWPLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNVNDRTQAVV 214 Query: 227 KAIRFGYI 234 AI+ G++ Sbjct: 215 VAIKNGWV 222 >gi|298246329|ref|ZP_06970135.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553810|gb|EFH87675.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 233 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 49/123 (39%), Gaps = 14/123 (11%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRS-----------SAA 171 +GY++ S + + + G V + L +R Sbjct: 109 AGADGYLLKGSPRDEIFKAIRLAMEGGSLLQPLVASKLLRHMGQRERENNYRTLQGIPRV 168 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L+L G ++EIA L +S T ++ S KL A NR +A+A A + Sbjct: 169 EELTERELEVLRLLAQGMPNKEIASHLVISERTAKFHVSSIMSKLGATNRTEAVALAAQR 228 Query: 232 GYI 234 G I Sbjct: 229 GLI 231 >gi|95108205|emb|CAD17929.2| probable transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Ralstonia solanacearum GMI1000] Length = 238 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 79/236 (33%), Gaps = 14/236 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 + +S ++ I+ A F P + + L+NY Sbjct: 10 DIFSDAQASTSDVFEH---IEAAALALGFEHVAYGFKAPLPLSEPKVVLLNNYPQAWRAR 66 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 + D + PI+W + + GL G A Sbjct: 67 YLEAGYLHVDPSVAQACRSQAPIVWS---DRLFQDVPALWDEAKAHGLRV--GWAQSSLD 121 Query: 125 GFHKNGYVIFTSEFLMLANEVIIE------AHGACYQVITDFLELFKKRSSAARNLTERE 178 G + + L+ + E V L + NLT RE Sbjct: 122 SLGVGGMLSLSRSCEPLSARELAENTRRMQWLAHMAHVALSRLLRADVAGYSDDNLTNRE 181 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ DG ++++IA+ L +S +TV+ ++ +A KL AVN+ A+ +A GY+ Sbjct: 182 VEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLHAVNKTAAVVRAAMLGYL 237 >gi|209547895|ref|YP_002279812.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533651|gb|ACI53586.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 234 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 P+ + ++ + E I + ++ E + + R LT+RE Sbjct: 120 IPLFTPEGRRYCLVLSGERQEPDQSEIADMLLDAMRIFDKLYEEILTQEMSGR-LTQREQ 178 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++ +G TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 179 EIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVT 234 >gi|162148611|ref|YP_001603072.1| LuxR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161787188|emb|CAP56781.1| putative transcriptional regulator, luxR family [Gluconacetobacter diazotrophicus PAl 5] Length = 239 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 87/238 (36%), Gaps = 28/238 (11%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++S++ EL I A + L+ P+ Sbjct: 18 RRSTTASELRAAFVRATKSISDCYIASGRVKGGAPVNAETALV-----------TYPDAW 66 Query: 69 IETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 ++ Y D + + +P W+++Q+ ++ E G+ GI Sbjct: 67 LKHYHERKYLDIDPTIVNAGRSYVPYRWEALQD-ISVKQRQMFLDIAETGIKG--GITMS 123 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARNLTER 177 + + +V + ++ + + A G Y+ ++ E + + R Sbjct: 124 LHTPD-RAAFVTSFAFTKAVSEDRDLVALGFINSQYYETLSKLSEA--ELPGPVPTFSRR 180 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E CL G T+ +I+ LG+S +T+NAYL + +KL RIQA+ +AI I Sbjct: 181 EKECLLWVSRGKTTWDISVILGISENTINAYLKNVILKLGCSGRIQAVLRAIDLNLIS 238 >gi|320191891|gb|EFW66538.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. EC1212] Length = 240 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 F Y++ P + + NY D L N ++W Sbjct: 39 FDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + + Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFNEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|294851589|ref|ZP_06792262.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026] gi|294820178|gb|EFG37177.1| LuxR family transcriptional regulator [Brucella sp. NVSL 07-0026] Length = 238 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 88/241 (36%), Gaps = 31/241 (12%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + + S +L +++N F + ++ L L + G P+ Sbjct: 14 QSADSADQLF---EIVKNYAHDLGFEYVSYVMSIPS-----LNGSLKW--VRFGAFPDGW 63 Query: 69 IETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 + Y D L + + +IW +S GI+ P Sbjct: 64 EQRYLAQNYAEIDPLLRRGVNSIDLLIWS-----QNFFASAPQIWADAVKYGLKVGISQP 118 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FKKRSSAA------RN 173 G + F L I Q++T+ L L +++ A + Sbjct: 119 CWAAQGVFGLLSFVRSGPALTPGEISMLR-RQLQMLTNLLHLSMYERVDVPAISCIGDVS 177 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ +G T+E I L +S TVN ++ + KL AVN++QA+AKA FG Sbjct: 178 LTLREREILRWTSEGKTAEIIGTILNISTRTVNFHISNVLTKLVAVNKVQAVAKARTFGL 237 Query: 234 I 234 + Sbjct: 238 L 238 >gi|161724871|emb|CAO85746.1| rR protein [Pseudomonas putida] Length = 240 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 40/189 (21%), Positives = 62/189 (32%), Gaps = 18/189 (9%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P +++Y D + H + P W G R Sbjct: 54 SNYPPSWVKSYKDNKSYLIDPIIKHGLREITPFSWHEAL--ANSGPEGVDFFRRATRYRI 111 Query: 115 FAGIAFPVRLGFHKNGYVIF--TSEFLMLANEVIIEAHGACYQVITDFLELFKKR----- 167 +G F +R + + + + +I L R Sbjct: 112 CSGTTFTLRDASGTFCALSVCDAGSQVDFDRRMAKQQSQLQMLLIKFHSWLMTSRKTDQL 171 Query: 168 --SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 S+A L+ RE LQL G T EIA G+S TV ++ + + KL N QA+ Sbjct: 172 FSSAADGPLSTRELGVLQLVMRGKTYREIATDCGISERTVKFHMSNISGKLQVGNAKQAV 231 Query: 226 AKAIRFGYI 234 +A R G I Sbjct: 232 YEAKRQGII 240 >gi|148265144|ref|YP_001231850.1| regulatory protein, LuxR [Geobacter uraniireducens Rf4] gi|146398644|gb|ABQ27277.1| transcriptional regulator, LuxR family [Geobacter uraniireducens Rf4] Length = 250 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 66/187 (35%), Gaps = 12/187 (6%) Query: 57 YDLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 Y+ + P ++ Y D W+ +E+ + Sbjct: 64 YETLNFSYPAEWLDAYRTNNFHLLDPITTENFKNYSLQYWKDTFNTYDVEAK---FLSAA 120 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKR 167 G A + F G + S + + + + F ++ +K+ Sbjct: 121 LDFRLVDGYAIGITNSFRTEGCIFSISGPIKKEPRNELVLNLLAPHLHQAFRQVLSVEKK 180 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + +T RE L G +S +I+ L +S TV ++ + KLDAV+RI A+A Sbjct: 181 GKISTTITIREREVLNWIKKGKSSWDISTILAISERTVKFHVDNVMRKLDAVSRIHAVAV 240 Query: 228 AIRFGYI 234 A+ G I Sbjct: 241 ALSVGLI 247 >gi|302388953|ref|YP_003824774.1| two component transcriptional regulator, LuxR family [Thermosediminibacter oceani DSM 16646] gi|302199581|gb|ADL07151.1| two component transcriptional regulator, LuxR family [Thermosediminibacter oceani DSM 16646] Length = 213 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L +GY++ + L V + G Y +I ++ L + S A+R LT Sbjct: 96 LKTGISGYILKDIDPQALVEAVRAVSRGETYIQPTLTRALIAEYNRLSQPISRASRPLTA 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + +G ++ EI+EKLG+S TV ++ S KL+ ++R Q A++ + Sbjct: 156 REKEVMAYIAEGMSNIEISEKLGISEKTVKNHVSSILRKLNLMDRTQVAVYALKNNLV 213 >gi|328544601|ref|YP_004304710.1| transcriptional regulatory protein [polymorphum gilvum SL003B-26A1] gi|326414343|gb|ADZ71406.1| Transcriptional regulatory protein [Polymorphum gilvum SL003B-26A1] Length = 233 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 101/245 (41%), Gaps = 26/245 (10%) Query: 1 MSENTLTGKK--SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRR--QQLICELHN 56 M E L+ + S L +++ + AR A + + + L P R L+ Sbjct: 2 MDEVDLSTQLRIVSESTTAQKILDILEANL-ARIGATHILITGLPMPNRPIDSLVHRYRW 60 Query: 57 YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE-------TVIESSGQLSVRLE 109 D +G + ++ D L + +W + + Q+ + Sbjct: 61 PDTRNGSTESPVL-HASDSALMLGLASNRATVWTVTAGDMDHSRLLAAVGEGSQILIVPV 119 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 L P F G + T ++ + A E++ +A + + D L +R Sbjct: 120 TELHPLQAFVF-------CAGPKLKTGKYELAALELLTDA---AFTRLQDIGALSSQRPG 169 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A L+ RE L+L G T+ EIAE L +S TV+A+L +A+VKL+A N+ + +A+ Sbjct: 170 A---LSSRERKVLELTAFGKTASEIAELLDISQRTVHAHLQNASVKLNASNKTHTVVEAL 226 Query: 230 RFGYI 234 R+G I Sbjct: 227 RYGQI 231 >gi|169825786|ref|YP_001695944.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168990274|gb|ACA37814.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 199 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 2/108 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L + + G ++ L F + LTERE+ L L Sbjct: 92 ASVRGYLLKDSPIEELVSAIRTIMDGK--RIYAPELVDFVYEDDSENPLTERESQVLTLV 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G T++EIA +L LS TV Y+ + KL+ NRI+AIA+ G+ Sbjct: 150 AEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIARFKEKGW 197 >gi|223694801|gb|ACN18083.1| two component transcriptional regulator [uncultured bacterium BLR5] Length = 215 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ L VI + H + + + NLT RET LQ Sbjct: 103 LKSGACGYILKNMPPEDLLQ-VIRKVHSGEKKRLHPVIAATLADHFGEENLTSRETEVLQ 161 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L +G +++E+ +L +S TV ++ + KL A +R QA++ A+R G I Sbjct: 162 LISEGNSNKEVGNRLSISEETVKGHVKNILGKLGANDRTQAVSIAVRRGIIS 213 >gi|241205631|ref|YP_002976727.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859521|gb|ACS57188.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 241 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 63/189 (33%), Gaps = 15/189 (7%) Query: 58 DLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 P+ + Y D + LP W ++ E+ L + Sbjct: 54 PFVRTTYPDAWVSRYLLNSYVKVDPIVKQGFERQLPFDWSEVE--PTPEAYAMLVDAQKH 111 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFK 165 G+ G + PV + + + E+ L E + + + Sbjct: 112 GIGG-NGYSIPVADKAQRRALLSLNARIPAEEWTELVRRCRNEWIEIAHLIHRKAVYELH 170 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + +L+ RE CL G ++I+ LG+S HT YL +A KL A Sbjct: 171 GENDPVPSLSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAA 230 Query: 226 AKAIRFGYI 234 ++A++ I Sbjct: 231 SRAVQLRII 239 >gi|320333891|ref|YP_004170602.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755180|gb|ADV66937.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 228 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN---LTER 177 L GY++ + L V A G V LE F + + L+ R Sbjct: 106 LEAGAAGYLLKNAREDELLGAVRAVAAGESALHPSVARKVLERFSTNQTPSPPEETLSPR 165 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L++A G T++EIA L +S TV +L + KL +R +A+ I+ G+I Sbjct: 166 ELEVLRIAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLYGIKRGWI 222 >gi|312880693|ref|ZP_07740493.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] gi|310783984|gb|EFQ24382.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] Length = 211 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GYV+ TS L + + A G + + ++ E + ++ RE L Sbjct: 95 LKAGARGYVLKTSPAETLCRAIRVVAQGGLF-LDSEVAEAMGGDAFVPEPISPREREVLV 153 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 A G +S+EIA KL +S TV +L S K+ A N+ +A+ A+R+G + Sbjct: 154 QAAQGLSSKEIAAKLYISERTVQTHLASIYDKVGAKNKTEAMLLALRYGLVT 205 >gi|300935891|ref|ZP_07150848.1| autoinducer binding domain protein [Escherichia coli MS 21-1] gi|300458941|gb|EFK22434.1| autoinducer binding domain protein [Escherichia coli MS 21-1] Length = 240 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSYYQAKKFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|307324486|ref|ZP_07603693.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889730|gb|EFN20709.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 215 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 51/110 (46%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L + V A G + +LF+ R+ L+ RE L+L Sbjct: 106 AGAAGYLLKGSSRQELIDAVQTAARGETVLTPSLAGKLFRSRTVEPSPLSGREREVLRLV 165 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G G T+ EI +L +S TV +L + KL +R A+ KA+ G++ Sbjct: 166 GRGLTNSEIGTELFVSEATVKTHLLRSYRKLGVSDRTAAVMKAMERGFLS 215 >gi|83941288|ref|ZP_00953750.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36] gi|83847108|gb|EAP84983.1| transcriptional regulatory protein [Sulfitobacter sp. EE-36] Length = 244 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 93/238 (39%), Gaps = 24/238 (10%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNF---ALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 ++ SS+ L L+Q KA++F ++I+ ++ + IP Sbjct: 11 REVSSVSALW---LLVQRFAKAQDFRTVTYHSIDVQS---------LGDSSFGAVAIGIP 58 Query: 66 NILIETYGDDFLFHFN-------SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 Y ++ L+ + S + P W+ + + T + + + G+ Sbjct: 59 AEFHRMYTEEHLYLDDPFPPFAASQITPFFWRDLPQLTTLTEKQKAYLNRAREFGFADGL 118 Query: 119 AFPVRLGFHKNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 V +N V F + ++ +++ H A F L ++ R L+ Sbjct: 119 VCQVFGPQARNALVSIGFHHDRPRPSDAEVLDLHVASQFAHMRFCALVAGPAAPNRRLSP 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G ++ IA+ +G+S HTV+ + KLD +R +A + + FG I Sbjct: 179 RELELLRWIARGKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRAAVRGVAFGLI 236 >gi|71492988|gb|AAZ32754.1| MrtR [Mesorhizobium tianshanense] Length = 272 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 15/189 (7%) Query: 58 DLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 P+ + Y D + LP W ++ E+ L + Sbjct: 85 PFVRTTYPDAWVSRYLLNSYVKVDPIVKQGFERQLPFDWSEVE--PTPEAYAMLVDAQKH 142 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFK 165 G+ G + PV + + + E+ L E + + + Sbjct: 143 GIGG-NGYSIPVADKAQRRALLSLNARIPAEEWAELVRRCRNEWIEIAHLIHRKAVYELH 201 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + L+ RE CL G ++I+ LG+S HT YL +A KL A Sbjct: 202 GENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAA 261 Query: 226 AKAIRFGYI 234 ++A++ I Sbjct: 262 SRAVQLRII 270 >gi|240145753|ref|ZP_04744354.1| nitrate/nitrite response regulator protein NarL [Roseburia intestinalis L1-82] gi|257202169|gb|EEV00454.1| nitrate/nitrite response regulator protein NarL [Roseburia intestinalis L1-82] gi|291536999|emb|CBL10111.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Roseburia intestinalis M50/1] Length = 213 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTERETS 180 NGY++ SE L ++ +G Y V+ + SS +LT RE Sbjct: 98 GVNGYLLKDSESAELKKAILAVVNGEDYIQPSLIPVLNSKMLDRDSDSSKIESLTRRELE 157 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L++ G ++EIAE L +S TV ++ + K+ +R QA AIR I Sbjct: 158 VLKMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRTQAAVFAIRNNLIT 212 >gi|261418763|ref|YP_003252445.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|297531272|ref|YP_003672547.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|319765579|ref|YP_004131080.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261375220|gb|ACX77963.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|297254524|gb|ADI27970.1| two component transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] gi|317110445|gb|ADU92937.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 210 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSS--AARNLTERE 178 L Y++ TS+ +A+ + HG +V + ++K+ LT RE Sbjct: 94 LEAGATSYLLKTSKASEIADAIRATFHGQSVFEPEVAGKVMRNYRKQEERLPHEQLTSRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T++E+A++L +S+ TV ++ + KL +R QA+ A R G + Sbjct: 154 MEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHGLV 209 >gi|319644871|ref|ZP_07999104.1| sensor regulator [Bacillus sp. BT1B_CT2] gi|317392680|gb|EFV73474.1| sensor regulator [Bacillus sp. BT1B_CT2] Length = 199 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S LA+ + G EL + S A LT+RE L+L Sbjct: 94 AGVKGYLLKDSPSEELASAIRSVMKGKRIYA----PELMEDMYSEANPLTDREKEVLELV 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA++L + TV Y+ KL+ NRI+AI ++ G+ Sbjct: 150 ADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAITRSKEKGW 197 >gi|52081161|ref|YP_079952.1| two-component response regulator responsible for cold induction of the des gene [Bacillus licheniformis ATCC 14580] gi|52786544|ref|YP_092373.1| YocG [Bacillus licheniformis ATCC 14580] gi|52004372|gb|AAU24314.1| two-component response regulator responsible for cold induction of the des gene [Bacillus licheniformis ATCC 14580] gi|52349046|gb|AAU41680.1| YocG [Bacillus licheniformis ATCC 14580] Length = 199 Score = 113 bits (282), Expect = 2e-23, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S LA+ + G EL + S A LT+RE L+L Sbjct: 94 AGVKGYLLKDSPSEELASAIRSVMKGKRIYA----PELMEDMYSEANPLTDREKEVLELV 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA++L + TV Y+ KL+ NRI+AI ++ G+ Sbjct: 150 ADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAITRSKEKGW 197 >gi|167463122|ref|ZP_02328211.1| response regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 214 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 9/122 (7%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN 173 PV L Y++ TS +A + G +++ F + K S+ + Sbjct: 95 PV-LEAGAFSYLLKTSRAQEIAQAIRAAVKGQPILESQVATKIMNRFRQP-KPESAPHED 152 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G +++E+A++L + V TV ++ + KL +R QA A + G Sbjct: 153 LTEREMEVLRLIASGKSNQEVADELFIGVKTVKFHVTNVLQKLGVEDRTQAAIYAFKHGI 212 Query: 234 IC 235 + Sbjct: 213 VS 214 >gi|83854765|ref|ZP_00948295.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] gi|83842608|gb|EAP81775.1| transcriptional regulator, LuxR family protein [Sulfitobacter sp. NAS-14.1] Length = 248 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 92/238 (38%), Gaps = 24/238 (10%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNF---ALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 ++ SS+ L L+Q KA++F ++I+ ++ + IP Sbjct: 15 REVSSVSALW---LLVQRFAKAQDFRTVTYHSIDVQS---------LGDTSFGAVAIGIP 62 Query: 66 NILIETYGDDFLFHFN-------SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 Y ++ L+ + S + P W+ + + T + + + G+ Sbjct: 63 AEFHRMYTEEHLYLDDPFPPFAASQITPFFWRDLPQLTTLTEKQKAYLNRAREFGFADGL 122 Query: 119 AFPVRLGFHKNGYVI--FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 V +N V F + + +++ H A F L ++ R L+ Sbjct: 123 VCQVFGPQARNALVSIGFHPDRPRPTDAEVLDLHVASQFAHMRFCALVAGPAAPNRRLSP 182 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G ++ IA+ +G+S HTV+ + KLD +R +A + + FG I Sbjct: 183 RELELLRWIARGKSNTSIAQIMGVSRHTVDTIMRRLFGKLDVTDRTRAAVRGLAFGLI 240 >gi|9622950|gb|AAF89989.1|AF210630_2 AHL-dependent transcriptional regulator CinR [Rhizobium leguminosarum] Length = 241 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 46/255 (18%), Positives = 83/255 (32%), Gaps = 37/255 (14%) Query: 1 MSENTLTGK------KSSSLQELSPRLHLIQNRIKARNFALY---TINSALDFPRRQQLI 51 M ENT + K + + + + ++Q + TI S +D P + Sbjct: 1 MIENTYSEKFESAFEQIKAAANVDAAIRILQAEYNLDFVTYHLAQTIASKIDSPFVRT-- 58 Query: 52 CELHNYDLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQL 104 P+ + Y D + LP W ++ E+ L Sbjct: 59 -----------TYPDAWVSRYLLNSYVKVDPIVKQGFERQLPFDWSEVE--PTPEAYAML 105 Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITD 159 + G+ G + PV + + + E+ L E + + Sbjct: 106 VDAQKHGIGG-NGYSIPVADKAQRRALLSLNARIPADEWTELVRRCRNEWIEIAHLIHRK 164 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + L+ RE CL G ++I+ LG+S HT YL +A KL Sbjct: 165 AVYELHGENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCA 224 Query: 220 NRIQAIAKAIRFGYI 234 A ++A++ I Sbjct: 225 TISAAASRAVQLRII 239 >gi|322381417|ref|ZP_08055416.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154644|gb|EFX46919.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 208 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 9/122 (7%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN 173 PV L Y++ TS +A + G +++ F + K S+ + Sbjct: 89 PV-LEAGAFSYLLKTSRAQEIAQAIRAAVKGQPILESQVATKIMNRFRQP-KPESAPHED 146 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G +++E+A++L + V TV ++ + KL +R QA A + G Sbjct: 147 LTEREMEVLRLIASGKSNQEVADELFIGVKTVKFHVTNVLQKLGVEDRTQAAIYAFKHGI 206 Query: 234 IC 235 + Sbjct: 207 VS 208 >gi|126649643|ref|ZP_01721884.1| two-component response regulator [Bacillus sp. B14905] gi|126593968|gb|EAZ87891.1| two-component response regulator [Bacillus sp. B14905] Length = 203 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 2/108 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L + + G ++ L F + LTERE+ L L Sbjct: 96 ASVRGYLLKDSPIEELVSAIRTIMDGK--RIYAPELVDFVYEDDSENPLTERESQVLTLV 153 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G T++EIA +L LS TV Y+ + KL+ NRI+AIA+ G+ Sbjct: 154 AEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIARFKEKGW 201 >gi|116250449|ref|YP_766287.1| GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255097|emb|CAK06171.1| putative GerE family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 234 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 P+ + ++ E I + ++ E + R LT+RE+ Sbjct: 120 IPLFTPEGRRYCLVLCGERQEPDQSEIADMLLDAMRIFDKLYEEILTPEMSGR-LTQRES 178 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++ +G TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 179 EIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVS 234 >gi|296269819|ref|YP_003652451.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296092606|gb|ADG88558.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 226 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L +G+++ L + + A G +++ F L Sbjct: 98 LRAGASGFLLKDVPPDELVQAIRVVAAGDAIVAPSVTRRLLDKFAALLPPADRQPTPALL 157 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L+L G ++ EIA +L +S TV ++G+ KL +R+QA+ A Sbjct: 158 ERLTERELEVLRLIAKGMSNAEIAAELVVSETTVKTHVGNVLTKLGLRDRVQAVVLAYET 217 Query: 232 GYIC 235 G + Sbjct: 218 GLVV 221 >gi|167464395|ref|ZP_02329484.1| Two-component response regulator [Paenibacillus larvae subsp. larvae BRL-230010] Length = 241 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 25/138 (18%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLEL------------ 163 L +GY++ E L N + G Y ++I + Sbjct: 103 TLRKGASGYLLKDMEAESLINAIRSVVAGHAYIHPKVTGKLINQLRRMTYLDHTGVAGGN 162 Query: 164 ------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + S + LT+RE L+L +G +++ I E L +S TV ++ S K++ Sbjct: 163 PAHDSALRYIDSPSSPLTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQKME 222 Query: 218 AVNRIQAIAKAIRFGYIC 235 +R QA+ AI+ G++ Sbjct: 223 VDDRTQAVIIAIKNGWVT 240 >gi|116253119|ref|YP_768957.1| AHL-dependent transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115257767|emb|CAK08865.1| putative AHL-dependent transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 241 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 63/189 (33%), Gaps = 15/189 (7%) Query: 58 DLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 P+ + Y D + LP W ++ E+ L + Sbjct: 54 PFVRTTYPDAWVSRYLLNSYVKVDPIVKQGFERQLPFDWSEVE--PTPEAYAMLVDAQKH 111 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFK 165 G+ G + PV + + + E+ L E + + + Sbjct: 112 GIGG-NGYSIPVADKAQRRALLSLNARIPAEEWAELVRRCRNEWIEIAHLIHRKAVYELH 170 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + +L+ RE CL G ++I+ LG+S HT YL +A KL A Sbjct: 171 GENDPVPSLSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAA 230 Query: 226 AKAIRFGYI 234 ++A++ I Sbjct: 231 SRAVQLRII 239 >gi|296101736|ref|YP_003611882.1| DNA-binding transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056195|gb|ADF60933.1| DNA-binding transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 240 Score = 113 bits (282), Expect = 3e-23, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 79/236 (33%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L + +S E+ +Q + +A F Y + P + I P Sbjct: 15 LRFQALTSASEV---YQELQRQTQALEFDYYALCLRHPVPFTRPRISV-------HATYP 64 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y + F + L P I + + + + GI + Sbjct: 65 QRWMAQYQSENYFAIDPVLKPENFIQGHLPWTDELFADAEALWNGARDHGLRKGITQCLM 124 Query: 124 LGFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L H G++ + + + E+ + +T L + ++RE Sbjct: 125 LPNHALGFLSVSCTSVQAGAVTSEELELRLQMLLQMALTSLLRFEDEMVMPPEMKFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 185 REILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|255608035|ref|XP_002538833.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus communis] gi|223510221|gb|EEF23550.1| Transcriptional activator protein ahyR/asaR, putative [Ricinus communis] Length = 234 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 60/188 (31%), Gaps = 9/188 (4%) Query: 55 HNYDLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107 D P +E Y D + + P W+ + E + + Q Sbjct: 46 PEPHFFFQDWPPDWLELYVNRNFVAADYGVAEARRRIAPFTWREAKAERTLSRAEQDIWD 105 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL--FK 165 G++ P+ V + + + + + L Sbjct: 106 TVVEWGWTDGLSVPIHGPGGYFAIVTMAGKEQPMPPALRGKLQQLAFLTHERCRALTGLA 165 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT RE CL+ G T +IA LG+S T ++ A KL A R QA+ Sbjct: 166 PVTDPQATLTHRELECLRWVAAGKTDLQIARLLGVSQTTARTHIDQARRKLGARTRSQAV 225 Query: 226 AKAIRFGY 233 A+ + G Sbjct: 226 ARLVLSGL 233 >gi|205375039|ref|ZP_03227830.1| DegU [Bacillus coahuilensis m4-4] Length = 225 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 18/129 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKR--------- 167 L GY++ + L N V + + G Y ++ ++ +L K++ Sbjct: 94 LQTGALGYLLKEMDADALVNAVKVVSEGGSYLHPKVTHNLVREYRQLIKEQHQQTVYQPV 153 Query: 168 --SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE LQL DG ++ I E L +S TV ++ + K++ +R QA+ Sbjct: 154 EIRRPLHLLTRRECEVLQLLADGCSNRTIGETLYISEKTVKNHVSNILQKMNVNDRTQAV 213 Query: 226 AKAIRFGYI 234 AI+ G++ Sbjct: 214 VTAIKKGWV 222 >gi|311068596|ref|YP_003973519.1| two-component response regulator DesK [Bacillus atrophaeus 1942] gi|310869113|gb|ADP32588.1| two-component response regulator (DesK) [Bacillus atrophaeus 1942] Length = 199 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA+ + G EL + S A LTERE L+L Sbjct: 94 AGVSGYLLKDSPSEELASAIRSVMDGKRIYA----PELMEDIYSEANPLTEREKEVLELV 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA +L + TV Y+ KL+ NRI+AI ++ G+ Sbjct: 150 ADGKNTKEIANELSIKSGTVRNYISMILDKLEVKNRIEAITRSKEKGW 197 >gi|299534498|ref|ZP_07047831.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298730126|gb|EFI70668.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 203 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 2/108 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L + + G ++ L F + LTERE+ L L Sbjct: 96 ASVRGYLLKDSPIEELVSAIRTIMDGK--RIYAPELVDFVYEDDSENPLTERESQVLTLV 153 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G T++EIA +L LS TV Y+ + KL+ NRI+AIA+ G+ Sbjct: 154 AEGKTTKEIAAELFLSAGTVRNYISTILEKLNVGNRIEAIARFKEKGW 201 >gi|291300839|ref|YP_003512117.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570059|gb|ADD43024.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 219 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--L 174 L +G+++ + L + + A GA Q++ + + + L Sbjct: 99 LRAGASGFLLKDAPPAQLLHGIRTVASGAALLDPDVTRQLVGRYAARIRPAEDTPDDTAL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+ +G ++ EIA L +S TV Y+ KL +R+QA+ A R G Sbjct: 159 TPRELEVLRHIANGLSNSEIAATLVISHETVKTYVSRILTKLGLRDRVQAVVYAYRRGL 217 >gi|296330481|ref|ZP_06872960.1| two-component response regulator (DesK) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674733|ref|YP_003866405.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152378|gb|EFG93248.1| two-component response regulator (DesK) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412977|gb|ADM38096.1| two-component response regulator (paired with DesK) [Bacillus subtilis subsp. spizizenii str. W23] Length = 199 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S LA+ + +G EL + S A LT+RE L+L Sbjct: 94 AGVKGYLLKDSPSEELASAIRSVMNGKRIYA----PELMEDIYSEANPLTDREKEVLELV 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA++L + TV Y+ KL+ NRI+AI ++ G+ Sbjct: 150 ADGKNTKEIAQELSIKSGTVRNYISMILEKLEVKNRIEAITRSKEKGW 197 >gi|330822376|ref|YP_004362597.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3] gi|327374213|gb|AEA65567.1| transcriptional regulator, LuxR family [Burkholderia gladioli BSR3] Length = 237 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 74/238 (31%), Gaps = 30/238 (12%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDLDSGDIPNILI 69 + S ++ L + F + + FP + + + D P Sbjct: 15 AKSGHDVFRELSAASREL---GFEHCSFGMRVPFPISNPRYVLQ--------SDYPEAWK 63 Query: 70 ETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 E Y D + H + LP+ WQ+ + + G P Sbjct: 64 ERYIRHNYFAVDPTVQHGLTQSLPLTWQADGQ-----TESTEFWEEAAHHGLRYGWCMPA 118 Query: 123 RLGFHKNGYVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 G V E +L E + + + L + LT Sbjct: 119 CCQNGTIGLVTMARSDEPIEERELLCKEYRMLWLASAVNSAMNAHLLAQSAPEYEVELTC 178 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ + G T EI + + TV +L + KL+A+N+ +A KA G + Sbjct: 179 REREALKWSAAGKTYVEIGMIMSVDDRTVKFHLVNTMRKLNAMNKTEAAVKAAMLGLL 236 >gi|302035554|ref|YP_003795876.1| LuxR family transcriptional regulator [Candidatus Nitrospira defluvii] gi|300603618|emb|CBK39949.1| Transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 223 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA----RNL 174 GY++ SE + + G +++ +F + +K+ +L Sbjct: 98 AGATGYLLKDSESSQIVAAIRAIYRGESLIHPSVASKILAEFSLMSQKKGKKPAWVEHDL 157 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE + L+L DG T++EIA L LS TV ++ + KL +R QA AIR G I Sbjct: 158 TEREITVLRLVADGKTNKEIANNLDLSEKTVKNHVRNIFHKLQVYDRTQAAILAIRKGLI 217 >gi|323704464|ref|ZP_08116042.1| two component transcriptional regulator, LuxR family [Thermoanaerobacterium xylanolyticum LX-11] gi|323535926|gb|EGB25699.1| two component transcriptional regulator, LuxR family [Thermoanaerobacterium xylanolyticum LX-11] Length = 210 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 55/106 (51%), Gaps = 3/106 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSC 181 L GY++ ++ L + I ++G Y + + + +++ ++LT+RE Sbjct: 94 LKIGVEGYILKDADSDELIKAIRIISNGGVY-IHPSLIREIESLEKNECKKDLTDREFEI 152 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L L +GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 153 LNLIAEGYSNKEIADKLFLSEKTVKNHVYNIFRKLDVKDRTQAAIY 198 >gi|145666435|gb|ABP88722.1| transcriptional activator protein [Pseudomonas corrugata] Length = 242 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 73/225 (32%), Gaps = 9/225 (4%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 S +E + L I +R+ FA + P I NY + D Sbjct: 24 SEEEYTEILGWIFSRLGIEKFAYVHLEPT---PFNNSKISIYSNYPSEWVDTYRKNSLYK 80 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D + + P W I + G P+ G + Sbjct: 81 SDPVMANTAITATPFFWNEI---PAEIDNNPEIFDQSASYGIKQGYTVPIHEPGRAFGSL 137 Query: 133 IFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 +SE +I+ ++ VI + + + L+ RE L+ G Sbjct: 138 HLSSEENDPDFPIIVRSNLFIIKTLSVIANQYRPMETTIESNLKLSPREIEFLRWLALGK 197 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EI + ++ TV + T K+D N QA+ KA++ ++ Sbjct: 198 NYKEIGLIMNITERTVKFHAKQMTEKMDCTNVKQAMIKAVQLNFV 242 >gi|307331390|ref|ZP_07610509.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306882949|gb|EFN14016.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 201 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 42/111 (37%), Positives = 56/111 (50%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L H +G+++ S L++ + A G +VI L L + LT RE L+ Sbjct: 94 LAAHVSGFLLKDSSPEKLSDAIRAVAQGE--RVIDPQLALA-ALDDGPQPLTPRELEVLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G S +IA KL LSV TV YL SA KLDA NR+ AI A G++ Sbjct: 151 FAAKGEESAQIAAKLFLSVGTVRNYLTSAVTKLDARNRVDAIRIAREAGWL 201 >gi|218661626|ref|ZP_03517556.1| autoinducer transcriptional regulator protein [Rhizobium etli IE4771] Length = 243 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 15/189 (7%) Query: 58 DLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 P+ + Y D + LP W ++ E+ L + Sbjct: 56 PFVRTTYPDAWVSRYLLNSYVKVDPIVKQGFERQLPFDWSEVE--PTPEAYAMLVDAQKH 113 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFK 165 G+ G + PV + + + E+ L E + + + Sbjct: 114 GIGG-NGYSIPVADKAQRRALLSMNARIPAEEWAELVRRCRNEWIEIAHLIHRKAVYELH 172 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + L+ RE CL G ++I+ LG+S HT YL +A KL A Sbjct: 173 GENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAA 232 Query: 226 AKAIRFGYI 234 ++A++ I Sbjct: 233 SRAVQLRII 241 >gi|56418969|ref|YP_146287.1| two-component response regulator [Geobacillus kaustophilus HTA426] gi|56378811|dbj|BAD74719.1| two-component response regulator [Geobacillus kaustophilus HTA426] Length = 210 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSS--AARNLTERE 178 L Y++ TS+ +A+ + HG +V + ++K+ LT RE Sbjct: 94 LEAGATSYLLKTSKASEIADAIRATFHGQSVFEPEVAGKVMRNYRKQEERLPHEQLTSRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T++E+A++L +S+ TV ++ + KL +R QA+ A R G + Sbjct: 154 MEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHGLV 209 >gi|213418834|ref|ZP_03351900.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 192 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 38/179 (21%), Positives = 64/179 (35%), Gaps = 7/179 (3%) Query: 63 DIPNILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 P + Y + F + L P + + V+ Q G+ Sbjct: 14 TYPQAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQ 73 Query: 121 PVRLGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLT 175 V L G++ F+ L + +EV + + ++ L A + Sbjct: 74 CVMLPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFS 133 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 134 KREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 192 >gi|295401191|ref|ZP_06811164.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|312109465|ref|YP_003987781.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294976784|gb|EFG52389.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|311214566|gb|ADP73170.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 226 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 18/129 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------- 173 L GY++ + L V I A G Y ++ + + +++ S+ Sbjct: 95 LQMGATGYLLKDMDADTLIEAVKIVAEGGSYLHPKITHNLIREYRRLSAGKNEKEGEGKR 154 Query: 174 --------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE LQL DG ++ I E L +S TV ++ + KL+ +R QA+ Sbjct: 155 EARWPLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKLNVNDRTQAV 214 Query: 226 AKAIRFGYI 234 AI+ G++ Sbjct: 215 IVAIKNGWV 223 >gi|226359681|ref|YP_002777459.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226238166|dbj|BAH48514.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 219 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK---KRSSAARN 173 L +G+++ + L + + A G ++++ FL+ + Sbjct: 95 LRAGASGFLLKDTPSEDLVSAIRSVAAGDAVVSPKVTRRLLSRFLDDGPAPLRDPEVLDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQL G ++ EIA +L LS T+ +++G KL+ +R+QA+ A G Sbjct: 155 LTEREREVLQLVATGLSNTEIAAQLFLSESTIKSHVGRILTKLNVRDRVQAVVLAYETGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|227822236|ref|YP_002826207.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii NGR234] gi|227341236|gb|ACP25454.1| transcriptional regulator NgrR, LuxR family [Sinorhizobium fredii NGR234] Length = 244 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 72/195 (36%), Gaps = 16/195 (8%) Query: 51 ICELHNYDLDSGDIPNILIETYG----DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV 106 +C LH+ G L + G D L G+ P+ W + + L Sbjct: 52 VCRLHH---TFGAYAEELYLSRGLHRIDPILRLALGGVRPVEWATARRR--FPECEPLYE 106 Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE---- 162 E L G+A P+ + + ++ H +Q+ + Sbjct: 107 AAEDIGLSTEGVALPLPSPAGRMALLAISANMSPPEWAEYRRCHLRDFQLAANLFHASML 166 Query: 163 ---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + LT RET L + G + EIA LG+S TV ++ +A KL+ V Sbjct: 167 EQAMADAIDDRDTRLTSRETEVLTWSAAGKSYWEIATILGISERTVRFFMSNARRKLNVV 226 Query: 220 NRIQAIAKAIRFGYI 234 + QA+A+A+R I Sbjct: 227 SNTQAVAQAVRHALI 241 >gi|108805405|ref|YP_645342.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766648|gb|ABG05530.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 207 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G ++ + + + V G + K+ + LT RE L+ Sbjct: 95 LREGARGCLLKGASRTEIFDAVRTVHAGGSVIPPEITARVLKEMRGESEPLTPRELEVLR 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T+ E+A L +S TV ++ S KL A NR QA+A A G + Sbjct: 155 LVARGLTNREVARALFISERTVKFHVSSLLAKLRAENRTQAVAIARERGLL 205 >gi|330807408|ref|YP_004351870.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375516|gb|AEA66866.1| Putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 253 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 45/198 (22%), Positives = 77/198 (38%), Gaps = 15/198 (7%) Query: 50 LICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQL 104 + +L N D + D + + P +W E I S Sbjct: 56 TVLKLRNTPRDWHSLWCEEGYYQIDPVQHLAINAISPFVWSYRPEADTVLQPFIGQSHAP 115 Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH--GACYQVITDFLE 162 V G+ P+ L G+ T + + + +I+ L+ Sbjct: 116 VVSYLQDSRMTCGVTVPMHLPKG--GFATLTGLRADTKGSTLQDVRQTLGDFSLISHALQ 173 Query: 163 ------LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 L K+ + LT+RE CL+LA +G T+ +IA +L S+ T+ +L SA KL Sbjct: 174 EAAFPLLGKEARACPVRLTKRERECLRLAAEGLTAADIARQLNRSLATITLHLTSAMHKL 233 Query: 217 DAVNRIQAIAKAIRFGYI 234 A NR+QA+ +A+ + + Sbjct: 234 GARNRVQAVVRAVHYRLL 251 >gi|152966552|ref|YP_001362336.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151361069|gb|ABS04072.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 211 Score = 112 bits (281), Expect = 3e-23, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK--KRSSAARNL 174 L +G+++ + L + A G Q++ + + +R+ L Sbjct: 91 LRAGASGFLLKDARPAQLLQGIRTVAAGTSLLAPEVTRQLVGRYASRIRPPQRAQEGSAL 150 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L DG ++ EIA L LS TV Y+ KLD +R+QA+ A R G + Sbjct: 151 TPRELQVLRLIADGLSNVEIAATLSLSPETVKTYVSRLLTKLDLRDRVQAVVYAYRHGLV 210 Query: 235 C 235 Sbjct: 211 T 211 >gi|146312149|ref|YP_001177223.1| DNA-binding transcriptional activator SdiA [Enterobacter sp. 638] gi|145319025|gb|ABP61172.1| transcriptional activator SdiA [Enterobacter sp. 638] Length = 240 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ S E+ L Q + +A F Y++ P + I +Y + Sbjct: 15 LRFQEMGSADEVYEEL---QRQTQALEFDYYSLCVRHPVPFTRPKISIHSSYPAEWISQY 71 Query: 66 NILIETYGDDFLFH--FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 D L F G LP W + ++ + GL GI + Sbjct: 72 QSENYYAIDPVLKRENFLQGHLP--WT---DALFADAQALWDGARDHGL--RKGITQCLM 124 Query: 124 LGFHKNGYVIFTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L H G++ + +M ++E+ + +T L + ++RE Sbjct: 125 LPNHALGFLSVSRTSQFGKMMDSDEIELRLQVLVQMALTTLLRFEHEMVMPPEMKFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G+I Sbjct: 185 KEILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGFI 240 >gi|254471852|ref|ZP_05085253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp. JE062] gi|211959054|gb|EEA94253.1| transcriptional regulator, LuxR family protein [Pseudovibrio sp. JE062] Length = 254 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 86/240 (35%), Gaps = 17/240 (7%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNF---ALYTINSALDFPRRQQLICELHNYDLDSGDI 64 ++ + L R + + F A + +Q IC L N+ D + Sbjct: 19 SQELWNCSSLQARWEELTRFAEKLGFEKGAYIIVPKIEGRVEDRQPIC-LSNHSQDWVEH 77 Query: 65 PNILIETYGDDFLFHFNSGL-LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 N + D + H SG + +W + + L F G+ P+ Sbjct: 78 YNSHHYYFKDPGMDHLLSGRKVDQLWTDYTVRPTSKVDSDFFNDVRSAGLKF-GVTIPLE 136 Query: 124 LGF-HKNGYVIFTS-EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL------T 175 H G F S E L + + ++ Y V+ + LF + L T Sbjct: 137 CSNKHLVGGASFASCERTQLGFDAQMTSN---YPVLKGAVHLFHTYAQEPETLSEFFGFT 193 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE CL G ++EIA L LS TV ++ A KL NR A+A+A+ F + Sbjct: 194 PREHECLLWLTAGRANKEIAHILNLSEKTVEHHIKRACKKLRVTNRTHAVARAMTFQLLS 253 >gi|117619760|ref|YP_858670.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561167|gb|ABK38115.1| transcriptional activator protein AhyR/asaR [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 203 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 74/230 (32%), Gaps = 59/230 (25%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 K+ ++ +L + F + + ++ + +N D + Sbjct: 15 KAKKTSDIQQQL---ERFSHQMGFDYFRLLIIFPISMQKSHVALFNNCPTSWFDAYSERH 71 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQ-EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D +F PI W + + + S+ Sbjct: 72 YLTQDPVVFLGLKQTQPIFWNKLDCDSPWLPSAS-------------------------- 105 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE---RETSCLQLA 185 + L+L K R + LTE RE CL A Sbjct: 106 --------------------------YIFNSALQLIKSRPDLMKYLTELSDREKECLFWA 139 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G TS EIA LG+S TVN +L T K D+ NR QAIAK+I G I Sbjct: 140 SEGKTSWEIATILGISERTVNFHLNQVTNKTDSKNRNQAIAKSISSGIIV 189 >gi|261404049|ref|YP_003240290.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280512|gb|ACX62483.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 203 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ LA + G + ++ L + A LTERE L+LA Sbjct: 97 AGVQGYLLKDEPSERLAEAIRRVMGG--RREVSPELVFGTLSGAGANPLTEREREVLRLA 154 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +S +IA KL LS TV Y+ KL+A NRI+AI+ A G+I Sbjct: 155 ADGNSSNDIAAKLHLSYGTVRNYMSEILSKLNAKNRIEAISLAEEKGWI 203 >gi|329928019|ref|ZP_08282023.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5] gi|328938123|gb|EGG34520.1| transcriptional regulator, LuxR family [Paenibacillus sp. HGF5] Length = 191 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ LA + G + ++ L + A LTERE L+LA Sbjct: 85 AGVQGYLLKDEPSERLAEAIRRVMGG--RREVSPELVFGTLSGAGANPLTEREREVLRLA 142 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +S +IA KL LS TV Y+ KL+A NRI+AI+ A G+I Sbjct: 143 ADGNSSNDIAAKLHLSYGTVRNYMSEILSKLNAKNRIEAISLAEEKGWI 191 >gi|111017172|ref|YP_700144.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110816702|gb|ABG91986.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 219 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK---KRSSAARN 173 L +G+++ + L + + A G +++ FL+ + Sbjct: 95 LRAGASGFLLKDTPSEDLVSAIRSVAAGDAVVSPKVTRRLLAKFLDDGPGPLRDPEVLDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE LQL G ++ EIA +L LS T+ +++G KL+ +R+QA+ A G Sbjct: 155 LTEREREVLQLVATGLSNTEIAGQLFLSESTIKSHVGRILTKLNVRDRVQAVVLAYETGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|297567827|ref|YP_003686798.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946] gi|296852276|gb|ADH65290.1| hypothetical protein Mesil_3486 [Meiothermus silvanus DSM 9946] Length = 206 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCL 182 + Y + +++ L + A G+ Y Q+ L S L+ RE L Sbjct: 95 AGADAYCLKSTDPASLLLAIRAAAIGSTYLDPQIAHIVLGQLSVLSGGQAQLSPRELEVL 154 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +G +++EIA++LG+S+ TV ++ KL A +R QA KA+R G + Sbjct: 155 RLIAEGLSNKEIAQRLGISLSTVKTHIEELLAKLSASDRTQAAIKAVRQGLL 206 >gi|332981237|ref|YP_004462678.1| LuxR family two component transcriptional regulator [Mahella australiensis 50-1 BON] gi|332698915|gb|AEE95856.1| two component transcriptional regulator, LuxR family [Mahella australiensis 50-1 BON] Length = 217 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----------R 172 L GY++ +E L + G Y + K+ ++ Sbjct: 96 LKLGACGYILKDAEVDQLVEAIHKAYRGQLYVQTEMANPVLKEDQASPLYGFNVGIRYDD 155 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L L G ++ EIA+KL +S TV +L S KL+ +R QA AI+ G Sbjct: 156 DLTQREREVLALVAKGLSNGEIAKKLFISEKTVKNHLSSIFRKLNVSDRTQAAVYAIKHG 215 Query: 233 Y 233 Y Sbjct: 216 Y 216 >gi|218461489|ref|ZP_03501580.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli Kim 5] Length = 234 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 88/226 (38%), Gaps = 8/226 (3%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++ + + L NFAL I+ A P ++ + + G L Sbjct: 17 RAINRTDFFRLLKAAAQHYHFDNFALARISEAS-APFGERDVVITSVPERRVGLFIATLK 75 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 ET G P+ ++ + E F + P+ + Sbjct: 76 ETLGTVRAKSAQFLATPVH----GRSAEPDTYPSDRLFNEFRSGVF--LFIPLFTPEGRR 129 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 ++ + E I + ++ E + + R LT+RE+ ++ +G Sbjct: 130 YCLVLSGEREEPDQGEIADLLLDAMRIFDKLYEEILTQEMSGR-LTQRESEIVKWTSEGK 188 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 189 TSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVS 234 >gi|218678644|ref|ZP_03526541.1| transcriptional regulator, LuxR family protein [Rhizobium etli CIAT 894] Length = 172 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 1/116 (0%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 P+ + ++ + E I + ++ E + R LT+RE Sbjct: 58 IPLFTPEGRRYCLVLSGERQEPDQGEIADMLLDAMRIFDKLYEEILTPEMSGR-LTQREQ 116 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++ +G TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 117 EIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVT 172 >gi|34499545|ref|NP_903760.1| LuxR/UhpA family transcriptional regulator [Chromobacterium violaceum ATCC 12472] gi|327200688|pdb|3QP6|A Chain A, Crystal Structure Of Cvir (Chromobacterium Violaceum 12472) Bound To C6-Hsl gi|34332902|gb|AAQ61750.2| transcriptional activator, LuxR/UhpA family of regulators [Chromobacterium violaceum ATCC 12472] Length = 265 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 62/181 (34%), Gaps = 12/181 (6%) Query: 61 SGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + P+ + Y D + + G P+IW+ + S + + Sbjct: 77 NVSYPSDWLNQYSQENFAQHDPIMR-IHLGQGPVIWEE-RFSRAKGSEEKRFIAEASSNG 134 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-ACYQVITDFLELFKKRSSAAR 172 +GI F + G ++ N ++ + + + ++ Sbjct: 135 MGSGITFSAASDRNNVGSILSIGGKEPGRNAALVAMLNCLTPHLHQAAVRIANLPPASPS 194 Query: 173 --NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE G T+ EIA L +S TV ++ + KL+A NR AI + Sbjct: 195 NMPLSQREYDIFHWMSRGKTNWEIATILNISERTVKFHVANVIRKLNANNRTHAIVLGMH 254 Query: 231 F 231 Sbjct: 255 L 255 >gi|289523811|ref|ZP_06440665.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502955|gb|EFD24119.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 211 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ T+ L + I A Y + + ++ +L+ RE L Sbjct: 95 LRAGAKGYILKTASPEELLRAIEIVASQGVY-LDKEVAAAVEEPGFTPESLSPREREVLL 153 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 LAG G +S+EIA KL +S TV +L S KL A N+ +A+ A+++G + Sbjct: 154 LAGRGESSKEIASKLYISERTVQTHLASIYDKLGARNKTEALLLALKYGVVT 205 >gi|229130601|ref|ZP_04259557.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] gi|6759482|emb|CAB69808.1| putative two-component response regulator [Bacillus cereus ATCC 14579] gi|228652940|gb|EEL08822.1| Two-component response regulator [Bacillus cereus BDRD-Cer4] Length = 159 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G +V D + + L++RE L LA Sbjct: 55 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REVSQDLMFGLWQEQ---NPLSDREKEVLLLA 110 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 111 KEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGWI 159 >gi|317128969|ref|YP_004095251.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315473917|gb|ADU30520.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 199 Score = 112 bits (280), Expect = 4e-23, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 NGY++ S LAN + G EL + S + LTERE L Sbjct: 94 AGVNGYMLKDSPSDELANAIRSVMAGRRIYA----SELVDEVYSESNPLTEREREVLVHM 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG +++EIA L L+ TV Y+ + KL+ NRI+AI K G+ Sbjct: 150 ADGKSTKEIANILHLTNGTVRNYISTILDKLEVGNRIEAITKVKEKGW 197 >gi|322382401|ref|ZP_08056304.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153618|gb|EFX45997.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 230 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 25/138 (18%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLEL------------ 163 L +GY++ E L N + G Y ++I + Sbjct: 92 TLRKGASGYLLKDMEAESLINAIRSVVAGHAYIHPKVTGKLINQLRRMTYLDHTGVAGGN 151 Query: 164 ------FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + S + LT+RE L+L +G +++ I E L +S TV ++ S K++ Sbjct: 152 PAHDSALRYIDSPSSPLTKREAEVLRLMAEGRSNKSIGEYLYISEKTVKNHVSSILQKME 211 Query: 218 AVNRIQAIAKAIRFGYIC 235 +R QA+ AI+ G++ Sbjct: 212 VDDRTQAVIIAIKNGWVT 229 >gi|167828172|ref|ZP_02459643.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 9] Length = 210 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 67/215 (31%), Gaps = 9/215 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FP I + NY + D + Sbjct: 1 MTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAVKAALGS 60 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLML 141 LP+ W +S G + R G + + + + Sbjct: 61 DLPVTWS-----APANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRTQDPIDT 115 Query: 142 ANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 A + E H +LT RET L+ DG T+ EIA L Sbjct: 116 AEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILS 175 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TVN ++ + KL + N+IQA+AKA G + Sbjct: 176 ISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 210 >gi|150396769|ref|YP_001327236.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150028284|gb|ABR60401.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 246 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 75/194 (38%), Gaps = 12/194 (6%) Query: 51 ICELHN-YDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLE 109 IC LH+ + + ++ + D L G+ P+ W + + L V E Sbjct: 52 ICRLHHTFGAYAAEVYAVRGLHRIDPILKLALGGVRPVEWATARRR--FPECEPLFVAAE 109 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS 169 L G+A P+ + + ++ + H +Q+ + S Sbjct: 110 EIGLSTEGVALPLPSPAGRMALLAISANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHS 169 Query: 170 AAR---------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 A LT RET L + G + EIA LG+S TV ++ +A KL+ V+ Sbjct: 170 AMAGAMEDERDLRLTGRETEVLTWSAAGKSYWEIATILGISERTVRFFMTNARRKLNVVS 229 Query: 221 RIQAIAKAIRFGYI 234 QA+A A+R I Sbjct: 230 NTQAVAHAVRHALI 243 >gi|329907385|ref|ZP_08274651.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium IMCC9480] gi|327546980|gb|EGF31877.1| hypothetical protein IMCC9480_3266 [Oxalobacteraceae bacterium IMCC9480] Length = 267 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 42/217 (19%), Positives = 76/217 (35%), Gaps = 11/217 (5%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 I R A F + + P I +NYD + ++ D + H + Sbjct: 51 IVERTAALGFDFASFGMQMPLPLNNPKIVTRNNYDPEWWNVYLKNNYFQIDPVVIHVRTS 110 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT------SE 137 +W + + + G R + F+ SE Sbjct: 111 DEAAVWS----DNFFSAQPKF-WEHAQSFGLRYGWTKATRSSVGTMSQLSFSRRENPLSE 165 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 +L E + + + ++ + L++RE ++ DG T+ EIA Sbjct: 166 QELLLKESAMIDLADLAHLHMTECFVLEQFPESKTELSQRERDVIRWCADGKTNAEIAMI 225 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S +VN ++ + KLDA N+ A+ KA FG + Sbjct: 226 LNISTSSVNFHVLNFIKKLDASNKTHAVMKAASFGLL 262 >gi|51894297|ref|YP_076988.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857986|dbj|BAD42144.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 221 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 58/124 (46%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--------- 171 L GY++ +E+ L+ + A G Q+ T L+ F + SS A Sbjct: 98 LAAGARGYLLKDAEYDELSQAIRTVAAGESLLQPQITTRVLKEFSRLSSMAASRPKARPL 157 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERET L+L G ++++IAEKL + TV ++ S KL A +R+ AI A Sbjct: 158 VEPLTERETEVLRLMASGASNQDIAEKLFIGQGTVKHHVRSIFAKLGARDRVHAILLAQE 217 Query: 231 FGYI 234 + Sbjct: 218 LNLV 221 >gi|326391463|ref|ZP_08212998.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] gi|325992489|gb|EGD50946.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] Length = 208 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETSC 181 L GY++ +E+ L + +G Y + +E + ++LT RE Sbjct: 94 LKLGVEGYILKDAEYDDLIKAIRTIYNGGVY-IHPSLMEEIDNIDHENLKKDLTPREIEI 152 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+L GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 153 LKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIY 198 >gi|307266655|ref|ZP_07548184.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter wiegelii Rt8.B1] gi|306918318|gb|EFN48563.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter wiegelii Rt8.B1] Length = 208 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETSC 181 L GY++ +E+ L + +G Y + +E + ++LT RE Sbjct: 94 LKLGVEGYILKDAEYDDLIKAIRTIYNGGVY-IHPSLMEEIDNIDHENLKKDLTPREIEI 152 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+L GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 153 LKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIY 198 >gi|289578700|ref|YP_003477327.1| LuxR family transcriptional regulator [Thermoanaerobacter italicus Ab9] gi|297544934|ref|YP_003677236.1| two component LuxR family transcriptional regulator [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528413|gb|ADD02765.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter italicus Ab9] gi|296842709|gb|ADH61225.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 205 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETSC 181 L GY++ +E+ L + +G Y + +E + ++LT RE Sbjct: 91 LKLGVEGYILKDAEYDDLIKAIRTIYNGGVY-IHPSLMEEIDNIDHENLKKDLTPREIEI 149 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+L GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 150 LKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIY 195 >gi|167552822|ref|ZP_02346573.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322659|gb|EDZ10498.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 240 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 80/236 (33%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ ++ +++ L R++ F Y + P + I P Sbjct: 15 LRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKI-------SLRTTYP 64 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y + F + L P + + V+ Q G+ V Sbjct: 65 PAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124 Query: 124 LGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L G++ + L + +EV + + ++ A ++RE Sbjct: 125 LPNRALGFLSISRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|94497651|ref|ZP_01304219.1| putative transcription regulator protein [Sphingomonas sp. SKA58] gi|94422868|gb|EAT07901.1| putative transcription regulator protein [Sphingomonas sp. SKA58] Length = 208 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 14/192 (7%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL---EG 110 + + ++P + + + + P + T + + + L Sbjct: 16 FRSEESRWWEVPQLALSS---PIVHACRVEAEPFWCNAHGFRTRLPNPLLDLIDLHDFRI 72 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRS 168 + A I P+ L F + G F S + + A A + F++ + K + Sbjct: 73 RAMTAAAIVVPIHLPFGQIGAASFLSPEPDTNDLSDAYSSAADALAVLARAFVQSYSKVT 132 Query: 169 SAARN------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + AR+ LT+RE CL+ A G T+EEI LGL TV ++ SA+VKLDAVNR Sbjct: 133 ARARHDLASISLTKREVECLRWAAAGKTNEEIGIILGLQRTTVRFHIRSASVKLDAVNRD 192 Query: 223 QAIAKAIRFGYI 234 Q + KA + G++ Sbjct: 193 QTMFKAAQLGFL 204 >gi|325277395|ref|ZP_08143015.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097468|gb|EGB95694.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 242 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 74/228 (32%), Gaps = 7/228 (3%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L +++++L + L R+ F L+++ + D + E + Sbjct: 14 LAVERATTLAGVQDALRPFAMRLGYDRFVLFSVRAVADALIDRVYWVEGDWWGDGQAIDA 73 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 + H P W +T E + V G+ PV Sbjct: 74 RTYLTRC--PVTRHVLEARAPFFWT----KTCDEKGERYRVVRRPAGAGVHGLQLPVFGP 127 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQL 184 G + + + E + L + +++A L+ RE L+ Sbjct: 128 QGLEGAMSLGGARIDSSPEARLMLAMVATAAFHTARRLLQPPLAASATQLSAREREVLRW 187 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G +IA LGLS TV +L +A +L QAI A+ G Sbjct: 188 TAAGSRQADIAATLGLSERTVENHLRAARRRLGVATTAQAIKIALHNG 235 >gi|237705872|ref|ZP_04536353.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA] gi|26108586|gb|AAN80789.1|AE016762_42 Regulatory protein sdiA [Escherichia coli CFT073] gi|91072709|gb|ABE07590.1| regulatory protein SdiA [Escherichia coli UTI89] gi|226900629|gb|EEH86888.1| regulatory protein sdiA [Escherichia sp. 3_2_53FAA] Length = 244 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 43 YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 102 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 103 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLK 157 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 158 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 217 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 218 HQKNMQKKINAPNKTQVACYAAATGLI 244 >gi|117624058|ref|YP_852971.1| DNA-binding transcriptional activator SdiA [Escherichia coli APEC O1] gi|161486200|ref|NP_754222.2| DNA-binding transcriptional activator SdiA [Escherichia coli CFT073] gi|162138422|ref|YP_541121.2| DNA-binding transcriptional activator SdiA [Escherichia coli UTI89] gi|191173269|ref|ZP_03034799.1| regulatory protein SdiA [Escherichia coli F11] gi|218558774|ref|YP_002391687.1| DNA-binding transcriptional activator SdiA [Escherichia coli S88] gi|218699520|ref|YP_002407149.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI39] gi|227885657|ref|ZP_04003462.1| LuxR family protein [Escherichia coli 83972] gi|300982244|ref|ZP_07175956.1| autoinducer binding domain protein [Escherichia coli MS 200-1] gi|300993973|ref|ZP_07180620.1| autoinducer binding domain protein [Escherichia coli MS 45-1] gi|301050730|ref|ZP_07197588.1| autoinducer binding domain protein [Escherichia coli MS 185-1] gi|306814260|ref|ZP_07448426.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101] gi|331647509|ref|ZP_08348601.1| regulatory protein SdiA [Escherichia coli M605] gi|115513182|gb|ABJ01257.1| DNA-binding transcriptional activator [Escherichia coli APEC O1] gi|190906386|gb|EDV65995.1| regulatory protein SdiA [Escherichia coli F11] gi|218365543|emb|CAR03270.1| DNA-binding transcriptional activator [Escherichia coli S88] gi|218369506|emb|CAR17273.1| DNA-binding transcriptional activator [Escherichia coli IAI39] gi|222033657|emb|CAP76398.1| Regulatory protein sdiA [Escherichia coli LF82] gi|227837230|gb|EEJ47696.1| LuxR family protein [Escherichia coli 83972] gi|281178978|dbj|BAI55308.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli SE15] gi|294493959|gb|ADE92715.1| regulatory protein SdiA [Escherichia coli IHE3034] gi|300297547|gb|EFJ53932.1| autoinducer binding domain protein [Escherichia coli MS 185-1] gi|300307314|gb|EFJ61834.1| autoinducer binding domain protein [Escherichia coli MS 200-1] gi|300406419|gb|EFJ89957.1| autoinducer binding domain protein [Escherichia coli MS 45-1] gi|305852419|gb|EFM52870.1| DNA-binding transcriptional activator SdiA [Escherichia coli NC101] gi|307553930|gb|ADN46705.1| DNA-binding transcriptional activator [Escherichia coli ABU 83972] gi|307626607|gb|ADN70911.1| DNA-binding transcriptional activator SdiA [Escherichia coli UM146] gi|312946508|gb|ADR27335.1| DNA-binding transcriptional activator SdiA [Escherichia coli O83:H1 str. NRG 857C] gi|315286610|gb|EFU46043.1| autoinducer binding domain protein [Escherichia coli MS 110-3] gi|315290297|gb|EFU49675.1| autoinducer binding domain protein [Escherichia coli MS 153-1] gi|315296532|gb|EFU55829.1| autoinducer binding domain protein [Escherichia coli MS 16-3] gi|320194372|gb|EFW69003.1| DNA-binding transcriptional activator SdiA [Escherichia coli WV_060327] gi|323186796|gb|EFZ72116.1| regulatory protein sdiA [Escherichia coli RN587/1] gi|323952411|gb|EGB48284.1| autoinducer binding domain-containing protein [Escherichia coli H252] gi|323956313|gb|EGB52056.1| autoinducer binding domain-containing protein [Escherichia coli H263] gi|324007279|gb|EGB76498.1| autoinducer binding domain protein [Escherichia coli MS 57-2] gi|324013560|gb|EGB82779.1| autoinducer binding domain protein [Escherichia coli MS 60-1] gi|330911724|gb|EGH40234.1| N-3-oxohexanoyl-L-homoserine lactone quorum-sensing transcriptional activator [Escherichia coli AA86] gi|331043233|gb|EGI15371.1| regulatory protein SdiA [Escherichia coli M605] Length = 240 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|241203072|ref|YP_002974168.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856962|gb|ACS54629.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 234 Score = 112 bits (280), Expect = 5e-23, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 P+ + ++ + E I + ++ E + R LT+RE+ Sbjct: 120 IPLFTPEGRRYCLVLSGERQEPDQSEIADILLDAMRIFDKLYEEILTPEMSGR-LTQRES 178 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++ +G TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 179 EIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVS 234 >gi|302523631|ref|ZP_07275973.1| response regulator receiver [Streptomyces sp. AA4] gi|302432526|gb|EFL04342.1| response regulator receiver [Streptomyces sp. AA4] Length = 224 Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA----AR 172 L +G+++ ++ L N V A G +I F + + S+A Sbjct: 99 LRAGASGFLLKDAQPAELVNAVRTVARGEALLAPTVTRALIGQFADRIRPASAAGPGPLE 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G ++ EIAE+L LS+ TV Y+ KLD +R+QA+ A R G Sbjct: 159 HLTPREREVLVQLARGLSNAEIAEELVLSIETVKTYVSRILAKLDLRDRVQAVVLAYRTG 218 Query: 233 YIC 235 + Sbjct: 219 LVS 221 >gi|331663414|ref|ZP_08364324.1| regulatory protein SdiA [Escherichia coli TA143] gi|323977903|gb|EGB72989.1| autoinducer binding domain-containing protein [Escherichia coli TW10509] gi|331059213|gb|EGI31190.1| regulatory protein SdiA [Escherichia coli TA143] Length = 240 Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|158339385|ref|YP_001520562.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158309626|gb|ABW31243.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 208 Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 2/110 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + HG + ++ R +LTERE LQ Sbjct: 97 LQAGARGYILKDTTATELIQAIRTV-HGGKRYIPSEVALKLADRID-DSDLTERELEVLQ 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G +++EIA L +S TV ++ + KL +R QA+ A++ G Sbjct: 155 LLSKGNSNQEIAAALTISEGTVKFHINNILSKLGVKDRTQAVIMALKKGL 204 >gi|16080602|ref|NP_391429.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|154687664|ref|YP_001422825.1| DegU [Bacillus amyloliquefaciens FZB42] gi|221311500|ref|ZP_03593347.1| DegU [Bacillus subtilis subsp. subtilis str. 168] gi|221315827|ref|ZP_03597632.1| DegU [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320742|ref|ZP_03602036.1| DegU [Bacillus subtilis subsp. subtilis str. JH642] gi|221325027|ref|ZP_03606321.1| DegU [Bacillus subtilis subsp. subtilis str. SMY] gi|296330243|ref|ZP_06872724.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676152|ref|YP_003867824.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|308175281|ref|YP_003921986.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|321313096|ref|YP_004205383.1| two-component response regulator [Bacillus subtilis BSn5] gi|118438|sp|P13800|DEGU_BACSU RecName: Full=Transcriptional regulatory protein degU; AltName: Full=Protease production enhancer protein gi|143089|gb|AAA22545.1| iep protein [Bacillus subtilis] gi|143499|gb|AAA22733.1| degU protein (gtg start codon) [Bacillus subtilis] gi|143502|gb|AAA22735.1| protein kinase (put.); putative [Bacillus subtilis] gi|1762330|gb|AAC44938.1| transcriptional regulator of degradation enzymes [Bacillus subtilis subsp. subtilis str. 168] gi|2636075|emb|CAB15566.1| two-component response regulator [Bacillus subtilis subsp. subtilis str. 168] gi|126363001|emb|CAM35818.1| two-component response regulator DegU [Bacillus amyloliquefaciens FZB42] gi|154353515|gb|ABS75594.1| DegU [Bacillus amyloliquefaciens FZB42] gi|206967377|gb|ACI22669.1| two-component response regulator DegU [Bacillus subtilis] gi|219937642|emb|CAJ97429.1| transcriptional regulatory protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296152511|gb|EFG93379.1| DegU [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414396|gb|ADM39515.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|307608145|emb|CBI44516.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|320019370|gb|ADV94356.1| two-component response regulator [Bacillus subtilis BSn5] gi|328913615|gb|AEB65211.1| Transcriptional regulatory protein degU [Bacillus amyloliquefaciens LL3] Length = 229 Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L GY++ + L V + A G Y ++ +F L SA Sbjct: 96 LKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEV 155 Query: 174 ----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R Q Sbjct: 156 YPEIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQ 215 Query: 224 AIAKAIRFGYI 234 A+ AI+ G++ Sbjct: 216 AVVVAIKNGWV 226 >gi|320159841|ref|YP_004173065.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319993694|dbj|BAJ62465.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 214 Score = 111 bits (279), Expect = 5e-23, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 60/114 (52%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR--SSAARNLTERETS 180 NGY++ +E L ++ A G +V+ L + ++ S+ + L++RE Sbjct: 99 AGANGYILKNTEPEDLRKALLNIAEGKGVLSPEVVPPVLGVMQRGTLDSSPQLLSDRELE 158 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ +G T+++IA +L +S +TV ++ KL+A NR +A+ KA + G + Sbjct: 159 VLQCLAEGLTTQQIASRLFISENTVKTHIRHILDKLEASNRTEAVGKATQLGIL 212 >gi|300783016|ref|YP_003763307.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792530|gb|ADJ42905.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 219 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L +G+++ + L + + A GA +++ + AA L Sbjct: 99 LRAGASGFLLKDAPPDRLLHGIRTVATGAALLDPEVTRRLVGRHAARIRPVPGAAPEVPL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+L +G ++ EIAE+L +S TV ++ KLD +R+QA+ A R G Sbjct: 159 TPRELEVLRLLAEGLSNSEIAERLVISQETVKTFVSRILTKLDLRDRVQAVVYAYRHGL 217 >gi|167577870|ref|ZP_02370744.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis TXDOH] Length = 236 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 66/207 (31%), Gaps = 9/207 (4%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 + FP I + NY + D + P+ W + Sbjct: 35 GYEYAAYGMRRPFPISNPQILMVSNYPDRWQERYIEARFANVDSAVKAALGSDRPVTWSA 94 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV----II 147 T S + L G+ G + R G + + + Sbjct: 95 ---STNASKSAFWAEALSFGIA--HGWSSASRGADGTIGVLSLSRRQDAIDTAEKFRNES 149 Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 H +LT RET L+ DG T+ EIA L +S TVN Sbjct: 150 IVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILSISESTVNF 209 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL + N+IQA+AKA G + Sbjct: 210 HVKNIVSKLGSTNKIQAVAKAALMGML 236 >gi|312967117|ref|ZP_07781335.1| regulatory protein sdiA [Escherichia coli 2362-75] gi|312288581|gb|EFR16483.1| regulatory protein sdiA [Escherichia coli 2362-75] Length = 228 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 27 YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 86 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 87 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLK 141 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 142 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 201 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 202 HQKNMQKKINAPNKTQVACYAAATGLI 228 >gi|168259766|ref|ZP_02681739.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|200391066|ref|ZP_03217677.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603511|gb|EDZ02057.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205351245|gb|EDZ37876.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 240 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 80/236 (33%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ ++ +++ L R++ F Y + P + I P Sbjct: 15 LRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKI-------SLRTTYP 64 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y + F + L P + + V+ Q G+ V Sbjct: 65 PAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124 Query: 124 LGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L G++ + L + +EV + + ++ A ++RE Sbjct: 125 LPNRALGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|163745782|ref|ZP_02153141.1| transcription regulator, LuxR family, putative [Oceanibulbus indolifex HEL-45] gi|161380527|gb|EDQ04937.1| transcription regulator, LuxR family, putative [Oceanibulbus indolifex HEL-45] Length = 253 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 2/156 (1%) Query: 81 NSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY--VIFTSEF 138 +LP+ W ++ +E + + + + G P GI+ V + + F ++ Sbjct: 90 RQQVLPVYWSAVSKEARLTRAERAYMDRLLGRYPNDGISLKVHGPGGDSAVVGLGFAAKQ 149 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 L++ + + A + L + +S L+ RE L+ G ++ IAE L Sbjct: 150 ARLSSIALYKLLCAAQIAHLRYCALAESQSPRDFGLSPREVEVLEWIATGKSNGVIAEIL 209 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+S HTV+ + KLD +R A + + G + Sbjct: 210 GISPHTVDTIVRRIFAKLDVNDRTTAAIRGLGAGLL 245 >gi|217419193|ref|ZP_03450700.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|226200253|ref|ZP_03795798.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|217398497|gb|EEC38512.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 576] gi|225927761|gb|EEH23803.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] Length = 236 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 66/207 (31%), Gaps = 9/207 (4%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 + FP I + NY + D + LP+ W Sbjct: 35 GYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAVKAALGSDLPVTWS- 93 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIE- 148 +S G + R G + + + + A + E Sbjct: 94 ----APANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRTQDPIDTAEKFRNES 149 Query: 149 -AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 H +LT RET L+ DG T+ EIA L +S TVN Sbjct: 150 IVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILSISESTVNF 209 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL + N+IQA+AKA G + Sbjct: 210 HVKNIVSKLGSTNKIQAVAKAALMGML 236 >gi|83716885|ref|YP_439427.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|257142551|ref|ZP_05590813.1| ATP-dependent transcription regulator LuxR [Burkholderia thailandensis E264] gi|83650710|gb|ABC34774.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia thailandensis E264] Length = 234 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 66/207 (31%), Gaps = 9/207 (4%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 + FP I + NY + D + P+ W + Sbjct: 33 GYEYAAYGMRRPFPISNPQILMVSNYPDRWQERYIEARFANVDSAVKAALGSDRPVTWSA 92 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV----II 147 T S + L G+ G + R G + + + Sbjct: 93 ---STNASKSAFWAEALSFGIA--HGWSSASRGADGTIGVLSLSRRQDAIDTAEKFRNES 147 Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 H +LT RET L+ DG T+ EIA L +S TVN Sbjct: 148 IVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILSISESTVNF 207 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL + N+IQA+AKA G + Sbjct: 208 HVKNIVSKLGSTNKIQAVAKAALMGML 234 >gi|229000138|ref|ZP_04159708.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|229007659|ref|ZP_04165252.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228753610|gb|EEM03055.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228759675|gb|EEM08651.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 189 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ + + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMQGK-REISPELMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KL+A NRI+AIA A G+I Sbjct: 141 KEGKTANEIAKTLYLSSGTVRNYISDVLTKLNAKNRIEAIAIAEEKGWI 189 >gi|288573855|ref|ZP_06392212.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569596|gb|EFC91153.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 222 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 6/114 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR---NLTERET 179 G+V+ TS F L + + + G Y + L F + +S R L+ERE Sbjct: 99 AGVKGFVLKTSGFDELISAIRTVSGGDNYVDSRAAGKLLNCFSEDTSRERGMSRLSEREL 158 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G +EIAE+L LS TV ++ KL +R QA+A A R G Sbjct: 159 EVLYWLAQGLNGQEIAERLSLSDKTVKNHISHILAKLKVSDRTQAVAWAWRSGL 212 >gi|229076566|ref|ZP_04209526.1| Two-component response regulator [Bacillus cereus Rock4-18] gi|229099785|ref|ZP_04230710.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|229105944|ref|ZP_04236568.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|229118847|ref|ZP_04248196.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228664648|gb|EEL20141.1| Two-component response regulator [Bacillus cereus Rock1-3] gi|228677518|gb|EEL31771.1| Two-component response regulator [Bacillus cereus Rock3-28] gi|228683674|gb|EEL37627.1| Two-component response regulator [Bacillus cereus Rock3-29] gi|228706599|gb|EEL58812.1| Two-component response regulator [Bacillus cereus Rock4-18] Length = 189 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G +V D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REVSQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKTLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|157693950|ref|YP_001488412.1| response regulator DegU [Bacillus pumilus SAFR-032] gi|157682708|gb|ABV63852.1| response regulator DegU [Bacillus pumilus SAFR-032] Length = 229 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L GY++ + L V + A G Y ++ +F L SA Sbjct: 96 LKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEV 155 Query: 174 ----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R Q Sbjct: 156 YPEIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQ 215 Query: 224 AIAKAIRFGYI 234 A+ AI+ G++ Sbjct: 216 AVVVAIKNGWV 226 >gi|228994069|ref|ZP_04153970.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228765717|gb|EEM14370.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 189 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ + + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMQGK-REISPELMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KL+A NRI+AIA A G+I Sbjct: 141 KEGKTANEIAKTLYLSSGTVRNYISDVLTKLNAKNRIEAIAIAEEKGWI 189 >gi|172056637|ref|YP_001813097.1| two component LuxR family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171989158|gb|ACB60080.1| two component transcriptional regulator, LuxR family [Exiguobacterium sibiricum 255-15] Length = 209 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 60/120 (50%), Gaps = 5/120 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSA-ARNL 174 +PV + YV+ T+ +A + A G QV +E +K +S +L Sbjct: 90 VYPV-IEAGAMSYVLKTASAFEIAEAIRKTADGQSVMAAQVTGKMMERLRKPTSHLHDDL 148 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE LQL G ++EIA++L +S+ TV ++ + KLD V+R QA+ A + + Sbjct: 149 TEREQEVLQLMARGMANQEIADELFISLKTVKTHVSNILSKLDVVDRTQAVVYAFKHNIV 208 >gi|299069138|emb|CBJ40391.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein (LuxR family) [Ralstonia solanacearum CMR15] Length = 238 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 80/236 (33%), Gaps = 14/236 (5%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 + + S ++ I+ A F P + + L+NY Sbjct: 10 DIFSDEQVSTSDVFEH---IEAAALALGFEHVAYGFKAPLPLSEPKVVLLNNYPQAWRVR 66 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 + D + PI+W + + GL G A Sbjct: 67 YLEAGYLHVDPSVAQACRSQAPIVWS---DRLFQDVPALWDEAKAHGLRV--GWAQSSLD 121 Query: 125 GFHKNGYVIFTSEFLMLANEVIIE----AHGACYQVITDFLELFKKRSSA--ARNLTERE 178 G + + L+ + E + L + + +LT RE Sbjct: 122 SLGVGGMLSLSRSCEPLSARELAENTRRMQWLAHMAHVALSRLLRADVAGYVDDSLTNRE 181 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ DG ++++IA+ L +S +TV+ ++ +A KL AVN+ A+ +A GY+ Sbjct: 182 VEVMKWTADGKSAQDIADILAISKNTVDFHVKNAVKKLQAVNKTAAVVRAAMLGYL 237 >gi|261340314|ref|ZP_05968172.1| regulatory protein SdiA [Enterobacter cancerogenus ATCC 35316] gi|288317405|gb|EFC56343.1| regulatory protein SdiA [Enterobacter cancerogenus ATCC 35316] Length = 240 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 44/236 (18%), Positives = 81/236 (34%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ + E+ +Q + +A F +++ P + I P Sbjct: 15 LRFQELTCADEV---YQELQQQTQALEFDYFSLCVRHPVPFTRPKISV-------HSSYP 64 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + + Y + F + L P I + + + Q GI + Sbjct: 65 DRWMAQYKSENYFAVDPVLKPENFIQGHLPWTDELFADAQELWGGAQDHGIRKGITQCLM 124 Query: 124 LGFHKNGYVIFTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L H G++ + E + E+ + +T L + ++RE Sbjct: 125 LPNHALGFLSVSRTSLRENAIHHEEIELRLQMLVQMALTSLLRFEHETVMPPEMKFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 185 REILKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|302543091|ref|ZP_07295433.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302460709|gb|EFL23802.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 219 Score = 111 bits (279), Expect = 6e-23, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L +G+++ + L + + A GA +++ + + + L Sbjct: 99 LRAGASGFLLKDAPPSQLLHGIRTVATGAALLDPEVTRKLVGTYAARIRPAAGTPHDNPL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+L DG ++ EIA L +S TV ++ KLD +R+QA+ A R G Sbjct: 159 TPRELEVLRLIADGRSNSEIAAALQISQETVKTFVSRILTKLDLRDRVQAVVYAYRQGL 217 >gi|189218591|ref|YP_001939232.1| LuxR family transcriptional regulator [Methylacidiphilum infernorum V4] gi|189185449|gb|ACD82634.1| Transcriptional regulator LuxR family [Methylacidiphilum infernorum V4] Length = 251 Score = 111 bits (279), Expect = 7e-23, Method: Composition-based stats. Identities = 43/232 (18%), Positives = 81/232 (34%), Gaps = 15/232 (6%) Query: 15 QELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGD 74 +E L IQ I + A + ++ L H++ D D Sbjct: 23 KEFKTVLKKIQELIPSSLIACGLVKINSLNEVKKMLKIINHSFPSDLIAFYLQQKYQKAD 82 Query: 75 DFLFHFNSGLLPIIWQSIQEETVI----ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + L + ++ + ++ ++ + G++F + Sbjct: 83 PVVK----TALRLRGNIVRRTEIFRYFQDNFRSQYLKDASDISLHTGLSFGIVEEKTYRA 138 Query: 131 YV-IFTSEFLMLANEVIIEAHGACYQVITDFL------ELFKKRSSAARNLTERETSCLQ 183 + F + + + +G Y + L E+ K + + LT RE L+ Sbjct: 139 SLFSFCDKEIEKSPRHETILNGLKYPLHLALLNCSHPQEVEKPAKESPQALTARELEILK 198 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 DG T+ EI+ L +S TV +L + +KLD NR QA+A A + Sbjct: 199 WIMDGKTNWEISCILKISEATVKFHLKNIFLKLDVQNRCQAVATAFHRRLLS 250 >gi|316931973|ref|YP_004106955.1| autoinducer-binding domain-containing protein [Rhodopseudomonas palustris DX-1] gi|315599687|gb|ADU42222.1| Autoinducer-binding domain protein [Rhodopseudomonas palustris DX-1] Length = 242 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 62/186 (33%), Gaps = 16/186 (8%) Query: 61 SGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 P Y D + P W E + + + + Sbjct: 53 MSTYPKEWTSHYLRSHYERIDPVIMQALRDTEPFRWGIGSTERYLSPAQKRLLDEASQYG 112 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR- 172 G P+ G V F E + ++ Q++ F +R A+ Sbjct: 113 IRLGFTVPIHDGHGPVAAVTFAGNQREAQFERFVTSNPRMLQLMAMFFHSHVRRKLASDL 172 Query: 173 -----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA--- 224 L+ RE CL+ A G ++ +I LG+S HT +YL +A KL +QA Sbjct: 173 RVDGAALSAREFECLEWAARGKSAWDIGRILGISHHTAISYLNNAKAKLGVRTVVQAALR 232 Query: 225 IAKAIR 230 +A A R Sbjct: 233 VAAAKR 238 >gi|170683439|ref|YP_001743327.1| DNA-binding transcriptional activator SdiA [Escherichia coli SMS-3-5] gi|256017886|ref|ZP_05431751.1| DNA-binding transcriptional activator SdiA [Shigella sp. D9] gi|307314177|ref|ZP_07593787.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|309795974|ref|ZP_07690387.1| autoinducer binding domain protein [Escherichia coli MS 145-7] gi|170521157|gb|ACB19335.1| regulatory protein SdiA [Escherichia coli SMS-3-5] gi|306906146|gb|EFN36664.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|308120424|gb|EFO57686.1| autoinducer binding domain protein [Escherichia coli MS 145-7] gi|315061216|gb|ADT75543.1| DNA-binding transcriptional activator [Escherichia coli W] gi|323378207|gb|ADX50475.1| transcriptional regulator, LuxR family [Escherichia coli KO11] gi|323968333|gb|EGB63740.1| autoinducer binding domain-containing protein [Escherichia coli M863] gi|327253047|gb|EGE64701.1| regulatory protein sdiA [Escherichia coli STEC_7v] Length = 240 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|193066393|ref|ZP_03047441.1| regulatory protein SdiA [Escherichia coli E22] gi|192925978|gb|EDV80624.1| regulatory protein SdiA [Escherichia coli E22] Length = 240 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVCESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|332278913|ref|ZP_08391326.1| regulatory protein sdiA [Shigella sp. D9] gi|332101265|gb|EGJ04611.1| regulatory protein sdiA [Shigella sp. D9] Length = 244 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 43 YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 102 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 103 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLK 157 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 158 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 217 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 218 HQKNMQKKINAPNKTQVACYAAATGLI 244 >gi|299132715|ref|ZP_07025910.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2] gi|298592852|gb|EFI53052.1| transcriptional regulator, LuxR family [Afipia sp. 1NLS2] Length = 241 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 78/224 (34%), Gaps = 15/224 (6%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 L L + FA +++ PRR + + NY ++ D + L E Sbjct: 16 GDANSLRTVLADAGAALDLSCFAYLSMS-----PRRGGVPELISNYPVEWTD--HYLREH 68 Query: 72 YG--DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 Y D + +G P W + S + G P+ Sbjct: 69 YERVDPVIAVALAGTEPFEWGQEFAAKRLSKSQCALLDEAAQFGIRCGFTVPIHDSRGPV 128 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQ 183 V F ++ + IE + + Q++ + +R + L+ RE CL+ Sbjct: 129 AAVTFAADERRPTFQRCIEQNRSVLQLMAMYFHAHARRRLSINRVIDGVALSPREFECLE 188 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A G ++ EI L +S T +L +A +K QA+AK Sbjct: 189 WAAQGKSAWEIGRLLNISRRTAAFHLDNAKMKFGVRTICQAVAK 232 >gi|209550247|ref|YP_002282164.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536003|gb|ACI55938.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 241 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 15/189 (7%) Query: 58 DLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 P+ + Y D + LP W ++ E+ L + Sbjct: 54 PFVRTTYPDAWVSRYLLNSYVKVDPIVKQGFERQLPFDWSEVE--PTPEAYAMLVDAQKH 111 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFK 165 G+ G + PV + + + E+ L E + + + Sbjct: 112 GIGG-NGYSIPVADKAQRRALLSVNARIPVEEWTELVRRCRNEWIEIAHLIHRKAVYELH 170 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + L+ RE CL G ++I+ LG+S HT YL +A KL A Sbjct: 171 GENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAA 230 Query: 226 AKAIRFGYI 234 ++A++ I Sbjct: 231 SRAVQLRII 239 >gi|138894116|ref|YP_001124569.1| DNA-binding response regulator [Geobacillus thermodenitrificans NG80-2] gi|196250655|ref|ZP_03149344.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|134265629|gb|ABO65824.1| DNA-binding response regulator [Geobacillus thermodenitrificans NG80-2] gi|196209874|gb|EDY04644.1| two component transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] Length = 210 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSS--AARNLTERE 178 L Y++ TS+ +A+ + HG +V ++ +++ + LT RE Sbjct: 94 LEAGATSYLLKTSKASEIADAIRATFHGQSVLEPEVAGKVMQNRRRQRARLPHEQLTSRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T++E+A++L +S+ TV ++ + KL +R QA+ A R G + Sbjct: 154 MEVLLLMAQGKTNQEMADELFISLKTVKVHVSNILAKLGVQDRTQAVIYAFRHGLV 209 >gi|226365940|ref|YP_002783723.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244430|dbj|BAH54778.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 220 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELF---KKRSSAARN 173 L +G+++ + L V + A G ++I D +++ +A Sbjct: 97 LSIGASGFMLKDAPAEELIRAVRVVADGEALLAPTVTRRLIADVTSRRSTARRKPAALSA 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIAE+L ++ TV ++G KLD +R QA+ A G Sbjct: 157 LTPREREVLELIARGMSNTEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGL 216 Query: 234 IC 235 + Sbjct: 217 VT 218 >gi|302562273|ref|ZP_07314615.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] gi|302479891|gb|EFL42984.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] Length = 220 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---N 173 L +G+++ + L + + A GA Q++ + + A Sbjct: 99 LRAGASGFLLKDAPPSQLLHGIRTVAMGAALLDPEVTRQLVGRYAARIRPVEDGAPRDLP 158 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L DG ++ EIA L +S TV ++ KL +R+QA+ A R G Sbjct: 159 LTPRELEVLRLIADGLSNSEIAAALLISQETVKTFVSRILAKLGLRDRVQAVVYAYRRGL 218 >gi|111023439|ref|YP_706411.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110822969|gb|ABG98253.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 216 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELF---KKRSSAARN 173 L +G+++ + L V + A G ++I D +++ +A Sbjct: 93 LSIGASGFMLKDAPAEELIRAVRVVADGEALLAPTVTRRLIADVTSRRSTARRKPAALSA 152 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIAE+L ++ TV ++G KLD +R QA+ A G Sbjct: 153 LTPREREVLELIARGMSNTEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGL 212 Query: 234 IC 235 + Sbjct: 213 VT 214 >gi|239934234|ref|ZP_04691187.1| two component LuxR family transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291442679|ref|ZP_06582069.1| two component transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291345574|gb|EFE72530.1| two component transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 230 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 14/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKK-------RSS 169 L +G+++ + L N + A G +I F + + R Sbjct: 102 LRAGASGFLLKDAPPAELVNGIRTVARGEALLAPAVTRHLIGHFAQHLRPADTSRPARQD 161 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R L RE LQL +G ++ EIA + ++ TV Y+ KLD +R+QA+ A Sbjct: 162 VVRALAPRELEVLQLIAEGLSNAEIAAAMFITPETVKTYVSRILAKLDLRDRVQAVVLAY 221 Query: 230 RFGYIC 235 R G + Sbjct: 222 RVGLVS 227 >gi|215487121|ref|YP_002329552.1| DNA-binding transcriptional activator SdiA [Escherichia coli O127:H6 str. E2348/69] gi|215265193|emb|CAS09582.1| DNA-binding transcriptional activator [Escherichia coli O127:H6 str. E2348/69] Length = 240 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 75/207 (36%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPESWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTSEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|288572798|ref|ZP_06391155.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568539|gb|EFC90096.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 217 Score = 111 bits (278), Expect = 7e-23, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR---NLTERE 178 +G+V+ +S L + + A G CY +V L F K+ A +LT+RE Sbjct: 97 SVGVHGFVLKSSGRTELLSAIRSVARGQCYVDPKVAGLLLGAFHKKQDEADMLCDLTDRE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G ++ EI+ K+ LS TV ++ KLD +R QA A R G Sbjct: 157 KEVLFWLAQGLSNLEISAKMNLSEKTVKNHVSHILKKLDLRDRTQAAILAWRVGI 211 >gi|304317230|ref|YP_003852375.1| LuxR family transcriptional regulator [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778732|gb|ADL69291.1| two component transcriptional regulator, LuxR family [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 210 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 3/106 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSC 181 L GY++ ++ L + ++G Y + + + + + LT+RE Sbjct: 94 LKIGVEGYILKDADSDELIKAIRTISNGGVY-IHPSLVSEIENLDTDECKKELTDREMQI 152 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L L +GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 153 LSLIAEGYSNKEIADKLFLSEKTVKNHVYNIFRKLDVKDRTQAAIY 198 >gi|331266987|ref|YP_004326617.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|326683659|emb|CBZ01277.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 210 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L N V A G A Q ++ +E + LT R Sbjct: 90 MPV-LNAGARGYMLKTSSADELLNAVRKVAAGELAIEQEVSKKVEYHRNHIELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|194434963|ref|ZP_03067206.1| regulatory protein SdiA [Shigella dysenteriae 1012] gi|194416798|gb|EDX32924.1| regulatory protein SdiA [Shigella dysenteriae 1012] gi|320178182|gb|EFW53159.1| DNA-binding transcriptional activator SdiA [Shigella boydii ATCC 9905] gi|332095461|gb|EGJ00482.1| regulatory protein sdiA [Shigella dysenteriae 155-74] Length = 240 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|86359866|ref|YP_471757.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] gi|86283968|gb|ABC93030.1| autoinducer transcriptional regulator protein [Rhizobium etli CFN 42] Length = 261 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 74/200 (37%), Gaps = 16/200 (8%) Query: 48 QQLICELHNYDLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIES 100 + I + + P+ + Y D + S LP W+ I + E+ Sbjct: 59 ARTIVDNVDAPFVRTTYPDSWVSRYLLNDYINVDPIIREGFSRQLPFDWREID---ITET 115 Query: 101 SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQ 155 + + V E + G++ P+ + + + S E+ ++ + + E + Sbjct: 116 AQEFMVDAELHGIGTNGVSVPI-VDKSRRSLLSINSQKSDEEWTLIERQFLPEWLELGFL 174 Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + L RE CL A G S++I + LGLS HT YL SA K Sbjct: 175 LHRKAVFELHGENDPVPALGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKSARYK 234 Query: 216 LDAVNRIQAIAKAIRFGYIC 235 L AIA A+ I Sbjct: 235 LGCPTLSAAIAHAVHLNLIT 254 >gi|16129863|ref|NP_416426.1| quorum-sensing transcriptional activator [Escherichia coli str. K-12 substr. MG1655] gi|89108751|ref|AP_002531.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. W3110] gi|170081564|ref|YP_001730884.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. DH10B] gi|238901125|ref|YP_002926921.1| DNA-binding transcriptional activator [Escherichia coli BW2952] gi|253773131|ref|YP_003035962.1| DNA-binding transcriptional activator SdiA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|2506570|sp|P07026|SDIA_ECOLI RecName: Full=Regulatory protein SdiA gi|1736575|dbj|BAA15736.1| DNA-binding transcriptional activator [Escherichia coli str. K12 substr. W3110] gi|1788224|gb|AAC74983.1| quorum-sensing transcriptional activator [Escherichia coli str. K-12 substr. MG1655] gi|169889399|gb|ACB03106.1| DNA-binding transcriptional activator [Escherichia coli str. K-12 substr. DH10B] gi|238860878|gb|ACR62876.1| DNA-binding transcriptional activator [Escherichia coli BW2952] gi|253324175|gb|ACT28777.1| transcriptional regulator, LuxR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|260448967|gb|ACX39389.1| transcriptional regulator, LuxR family [Escherichia coli DH1] gi|315136553|dbj|BAJ43712.1| DNA-binding transcriptional activator SdiA [Escherichia coli DH1] Length = 240 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|148255499|ref|YP_001240084.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1] gi|146407672|gb|ABQ36178.1| putative transcriptional activator [Bradyrhizobium sp. BTAi1] Length = 213 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 40/185 (21%), Positives = 67/185 (36%), Gaps = 14/185 (7%) Query: 63 DIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 P+ +E Y D + + LP W + Q + + + Sbjct: 28 TYPSAWVEQYRANRYDRIDPVIARSVATTLPFAWSTDQFDALNNRQKWF-LEEASEFEIR 86 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVII-----EAHGACYQVITDFLELFKKRSSA 170 G+ P+ K + + A E I E H + ++ +S Sbjct: 87 HGVTIPIHDRQGKVATLTLAACEARSAFEAQISKYRHELHLIAIYLYARLRDVTPTPASP 146 Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R LT+RE CLQ A G ++ + AE + +S TV + +A KL QA+AK + Sbjct: 147 LRPCLTQRERICLQWAARGKSALDTAEIINVSRRTVVFHTQNAKRKLGVATVQQAVAKGL 206 Query: 230 RFGYI 234 + I Sbjct: 207 AYDII 211 >gi|15802351|ref|NP_288377.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 EDL933] gi|15831908|ref|NP_310681.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. Sakai] gi|168751842|ref|ZP_02776864.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113] gi|168758227|ref|ZP_02783234.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401] gi|168771520|ref|ZP_02796527.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486] gi|168777340|ref|ZP_02802347.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196] gi|168790328|ref|ZP_02815335.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869] gi|168802260|ref|ZP_02827267.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508] gi|195939220|ref|ZP_03084602.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. EC4024] gi|208810274|ref|ZP_03252150.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206] gi|208816575|ref|ZP_03257695.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045] gi|208820421|ref|ZP_03260741.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042] gi|209399275|ref|YP_002271030.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115] gi|217329032|ref|ZP_03445113.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588] gi|254793566|ref|YP_003078403.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. TW14359] gi|261227589|ref|ZP_05941870.1| DNA-binding transcriptional activator [Escherichia coli O157:H7 str. FRIK2000] gi|261255819|ref|ZP_05948352.1| DNA-binding transcriptional activator [Escherichia coli O157:H7 str. FRIK966] gi|291283093|ref|YP_003499911.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str. CB9615] gi|12516014|gb|AAG56931.1|AE005414_8 transcriptional regulator of ftsQAZ gene cluster [Escherichia coli O157:H7 str. EDL933] gi|13362122|dbj|BAB36077.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli O157:H7 str. Sakai] gi|187767387|gb|EDU31231.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4196] gi|188014167|gb|EDU52289.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4113] gi|189354905|gb|EDU73324.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4401] gi|189359736|gb|EDU78155.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4486] gi|189370214|gb|EDU88630.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC869] gi|189375707|gb|EDU94123.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC508] gi|208724790|gb|EDZ74497.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4206] gi|208730918|gb|EDZ79607.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4045] gi|208740544|gb|EDZ88226.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4042] gi|209160675|gb|ACI38108.1| regulatory protein SdiA [Escherichia coli O157:H7 str. EC4115] gi|209767028|gb|ACI81826.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767030|gb|ACI81827.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767032|gb|ACI81828.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767034|gb|ACI81829.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|209767036|gb|ACI81830.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli] gi|217318379|gb|EEC26806.1| regulatory protein SdiA [Escherichia coli O157:H7 str. TW14588] gi|254592966|gb|ACT72327.1| DNA-binding transcriptional activator [Escherichia coli O157:H7 str. TW14359] gi|290762966|gb|ADD56927.1| DNA-binding transcriptional activator [Escherichia coli O55:H7 str. CB9615] gi|320647124|gb|EFX15957.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H- str. 493-89] gi|320658009|gb|EFX25771.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658581|gb|EFX26275.1| DNA-binding transcriptional activator SdiA [Escherichia coli O55:H7 str. USDA 5905] gi|320668479|gb|EFX35306.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. LSU-61] gi|326342324|gb|EGD66105.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. 1044] gi|326344831|gb|EGD68578.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. 1125] Length = 240 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + + Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFNEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|228988578|ref|ZP_04148665.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771195|gb|EEM19674.1| Two-component response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 189 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAASIRNVMRGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|291486102|dbj|BAI87177.1| two-component response regulator [Bacillus subtilis subsp. natto BEST195] Length = 229 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L GY++ + L V + A G Y ++ +F L SA Sbjct: 96 LKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEV 155 Query: 174 ----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R Q Sbjct: 156 YPEIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQ 215 Query: 224 AIAKAIRFGYI 234 A+ AI+ G++ Sbjct: 216 AVVVAIKNGWV 226 >gi|229087841|ref|ZP_04219955.1| Two-component response regulator [Bacillus cereus Rock3-44] gi|228695477|gb|EEL48348.1| Two-component response regulator [Bacillus cereus Rock3-44] Length = 189 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ + + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REISPELMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|220929282|ref|YP_002506191.1| LuxR family transcriptional regulator [Clostridium cellulolyticum H10] gi|219999610|gb|ACL76211.1| two component transcriptional regulator, LuxR family [Clostridium cellulolyticum H10] Length = 216 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 9/118 (7%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLE--LFKKRSSAARN 173 L GYV+ +E +L + Y +++ +F L+++ S N Sbjct: 95 TLQLGCEGYVLKDAESSVLIEAIRNVYRDQTYIQPNMTGELVKEFNRVTLYEQDKSIINN 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L +G ++EIA+ L +S TV ++ + KLD +R QA A + Sbjct: 155 LTNREVEVLKLIAEGMINKEIAKALYISEKTVKNHISNIFKKLDVNDRTQAAIYAFKH 212 >gi|78222725|ref|YP_384472.1| LuxR family transcriptional regulator [Geobacter metallireducens GS-15] gi|78193980|gb|ABB31747.1| transcriptional regulator, LuxR family [Geobacter metallireducens GS-15] Length = 246 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 40/183 (21%), Positives = 60/183 (32%), Gaps = 14/183 (7%) Query: 63 DIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 P + Y D + + W E + Q + L Sbjct: 66 SYPEEWLSLYAEHDFAAVDPVVRAHIADFSAKPWS---EAYLKWGRPQPFLSLAEDFGIR 122 Query: 116 AGIAFPVRLGFHKNGYVIFT---SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 G +F V L + IF+ SE + I++ + S+ Sbjct: 123 KGYSFGV-LSSNDRTASIFSLCVSEKYPVHTPQILDILAPYFHEALRRTVQTDLPSACLA 181 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + +G EI+ LG+S TV + + KL A NR A+A AI G Sbjct: 182 TLTPREIEVISWLANGKNYWEISVILGISERTVKFHTSTIVQKLGAANRSHAVAIAISTG 241 Query: 233 YIC 235 I Sbjct: 242 LIS 244 >gi|170736657|ref|YP_001777917.1| LuxR family transcriptional regulator [Burkholderia cenocepacia MC0-3] gi|169818845|gb|ACA93427.1| transcriptional regulator, LuxR family [Burkholderia cenocepacia MC0-3] Length = 321 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 72/214 (33%), Gaps = 20/214 (9%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGL------------- 84 ++++L FPR + L Y D ++ H+ Sbjct: 109 VSASLGFPRFAISRVSRRHAGNGRAMSVETLCARYPDHWVAHYAQRDYGPVDPVHRMAFA 168 Query: 85 --LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 P W I+ IE Q + +G++ P+R V S + Sbjct: 169 RATPYRWADIRGLNRIE---QRVLGEARDAGLTSGVSIPLREANGDILLVNLASPSPEIK 225 Query: 143 NEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 EV + + L K R A L+ R+ CL G +S IA +G+ Sbjct: 226 TEVHMRLASLIGALFHQELHRLMKPHRPEPALELSPRQQECLAWVARGKSSWAIAAIVGI 285 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S HTV+ ++ A L +R A A+ G I Sbjct: 286 SPHTVDYHIAEAMKILGINSRTAAAVHAVTTGLI 319 >gi|217976294|ref|YP_002360441.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217501670|gb|ACK49079.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 244 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 26/196 (13%) Query: 58 DLDSGDIPNILIETYGDDFLFHFN-------SGLLPIIWQSIQEETVIESSGQLSVRLEG 110 + +E Y D+ + +LP+ W + + + Sbjct: 55 PFMALTYREEWVEHYKDEGYGLIDPVHNIGARSVLPLDWARLPRAEK-KVQRMFGEAADA 113 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------ 164 G + G+ PVR + + F + ++E E +++ D + + Sbjct: 114 G-VGRQGLTIPVRGPTNG-----LWALFSVTSDEADTEWARRRFELTKDMVHIAHYVHQR 167 Query: 165 ------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 K+ +T+RE L+ + +G + +I+ + +SV TV A+L SA KL A Sbjct: 168 AYKLHAKEDEIDLNAITKREIEALEWSAEGKSLADISILMRISVETVKAHLDSARYKLCA 227 Query: 219 VNRIQAIAKAIRFGYI 234 +NR+ A+ KAIR G I Sbjct: 228 LNRVHAVTKAIRAGLI 243 >gi|28453859|gb|AAO43546.1| transcriptional activator CinR [Rhizobium etli CFN 42] Length = 246 Score = 111 bits (278), Expect = 8e-23, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 74/200 (37%), Gaps = 16/200 (8%) Query: 48 QQLICELHNYDLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIES 100 + I + + P+ + Y D + S LP W+ I + E+ Sbjct: 44 ARTIVDNVDAPFVRTTYPDSWVSRYLLNDYINVDPIIREGFSRQLPFDWREID---ITET 100 Query: 101 SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQ 155 + + V E + G++ P+ + + + S E+ ++ + + E + Sbjct: 101 AQEFMVDAELHGIGTNGVSVPI-VDKSRRSLLSINSQKSDEEWTLIERQFLPEWLELGFL 159 Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + L RE CL A G S++I + LGLS HT YL SA K Sbjct: 160 LHRKAVFELHGENDPVPALGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKSARYK 219 Query: 216 LDAVNRIQAIAKAIRFGYIC 235 L AIA A+ I Sbjct: 220 LGCPTLSAAIAHAVHLNLIT 239 >gi|228936636|ref|ZP_04099430.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823071|gb|EEM68909.1| Two-component response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 189 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|228961616|ref|ZP_04123225.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798098|gb|EEM45102.1| Two-component response regulator [Bacillus thuringiensis serovar pakistani str. T13001] Length = 189 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G +V D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REVSQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|269956412|ref|YP_003326201.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305093|gb|ACZ30643.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 234 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L +G+++ + L + + A G+ +++ + A L Sbjct: 99 LRAGASGFLLKDAPPAQLLDGIRTVAAGSALLAPEVTRRLVGRYASRVAPPEPAPADGPL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L +G ++ EIA L ++ TV Y+ KLD +R+QA+ A + G + Sbjct: 159 TPRELDVLRLLAEGLSNAEIAAALVITRETVKTYVSRILTKLDLRDRVQAVVWAYQTGLV 218 >gi|229176028|ref|ZP_04303523.1| Two-component response regulator [Bacillus cereus MM3] gi|228607460|gb|EEK64787.1| Two-component response regulator [Bacillus cereus MM3] Length = 189 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|25029338|ref|NP_739392.1| putative two-component response regulator [Corynebacterium efficiens YS-314] gi|23494626|dbj|BAC19592.1| putative two-component response regulator [Corynebacterium efficiens YS-314] Length = 225 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 43/109 (39%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G L + + +LT RE L+L Sbjct: 117 AGALGYLLKDAPPNELLAAVRSAAEGDSTLSPMVANRLMTRVRTPKTSLTPRELEVLKLV 176 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI L LS TV ++L KL +R A+A A G + Sbjct: 177 AGGSSNREIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGLL 225 >gi|23100305|ref|NP_693772.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22778537|dbj|BAC14806.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 199 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + NGY++ S LAN + G EL LT RE L+L Sbjct: 94 ANVNGYLLKDSPSEDLANSIRAIMAGRKVYA----PELIDMAYEEGNPLTTREEQVLKLI 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG T++EIA +L L+ TV Y+ + KL+ NRI+AI++ G+ Sbjct: 150 ADGKTTKEIAGQLYLTNGTVRNYVSTIMDKLNVSNRIEAISRIKEKGW 197 >gi|229164302|ref|ZP_04292233.1| Two-component response regulator [Bacillus cereus R309803] gi|228619145|gb|EEK76040.1| Two-component response regulator [Bacillus cereus R309803] Length = 189 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|327189685|gb|EGE56833.1| autoinducer transcriptional regulator protein [Rhizobium etli CNPAF512] Length = 277 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 61/189 (32%), Gaps = 15/189 (7%) Query: 58 DLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 P+ + Y D + LP W ++ E+ L + Sbjct: 90 PFVRTTYPDAWVSRYLLNSYVKVDPIVKQGFERQLPFDWSEVE--PTPEAYAMLVDAQKH 147 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSE-----FLMLANEVIIEAHGACYQVITDFLELFK 165 G+ G + PV + + + + L E + + + Sbjct: 148 GIGG-NGYSIPVADKAQRRALLSMNARIPADHWAELVRRCRNEWIEIAHLIHQKAVYELY 206 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + L+ RE CL G ++I+ LG+S HT YL +A KL A Sbjct: 207 GENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAA 266 Query: 226 AKAIRFGYI 234 ++A++ I Sbjct: 267 SRAVQLRII 275 >gi|222098824|ref|YP_002532882.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229142095|ref|ZP_04270620.1| Two-component response regulator [Bacillus cereus BDRD-ST26] gi|221242883|gb|ACM15593.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228641384|gb|EEK97690.1| Two-component response regulator [Bacillus cereus BDRD-ST26] Length = 189 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTTNEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|253575856|ref|ZP_04853190.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251844650|gb|EES72664.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 242 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 26/139 (18%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA---- 171 L GY++ E L N + A G + ++I + + A Sbjct: 103 TLRKGATGYLLKDMEAESLINAIRTVAEGNAFIHPKVTGKLIQQLRRMEYLSETGAIAED 162 Query: 172 ---------------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 LT RE L+L +G +++ I E L +S TV ++ S K+ Sbjct: 163 TAIREAGVKFVAGDDNPLTRREAEVLRLMAEGRSNKMIGEHLFISEKTVKNHVSSILQKM 222 Query: 217 DAVNRIQAIAKAIRFGYIC 235 D +R QA+ AI+FG++ Sbjct: 223 DVDDRTQAVINAIKFGWVT 241 >gi|158314991|ref|YP_001507499.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158110396|gb|ABW12593.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 223 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 14/125 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLEL-------FKKRSS 169 L +G+++ + L N + A G A +++ F L R Sbjct: 94 LRAGASGFLLKDAAPGELVNAIRTVARGDAVLGPTAARRLVDRFAALPADSGSDRAARPE 153 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LTERE L GY++ EIA +L LS HTV ++G KLD +RIQA+ A Sbjct: 154 IVHDLTEREREVFLLVARGYSNREIAGRLHLSEHTVKVHVGRILAKLDLRDRIQAVVLAY 213 Query: 230 RFGYI 234 G + Sbjct: 214 ESGLV 218 >gi|134291839|ref|YP_001115608.1| LuxR family transcriptional regulator [Burkholderia vietnamiensis G4] gi|134135028|gb|ABO59353.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 239 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 77/233 (33%), Gaps = 17/233 (7%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +++ + + + ++A F + + P + E +N+ Sbjct: 13 EQAETASDAF---DGLAPAVRALGFEYHAYVLRVTIPITRPASMEWNNFPQAWRAHYAQK 69 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + D L + + P+ W + R G + +R Sbjct: 70 RYQHADPVLHYGQACTRPMPW------PGPLAGHDAFWRDAADFGLRHGWSQTLRDHRGA 123 Query: 129 NGYVIF-------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 G + E L +I + +++ + + S A L+ RE Sbjct: 124 MGTFSLVRGGPPISPEELRRTEPEMIWLCQFVHATMSNLI-VSDVMPSGAMRLSLREKEV 182 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G T+ E+A L L+ V ++ +A KLDA N+ A KA G I Sbjct: 183 LHWTAEGKTAAEVAAILQLTERNVGFHIQNAMDKLDATNKTHATVKAAMLGLI 235 >gi|148658361|ref|YP_001278566.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570471|gb|ABQ92616.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 226 Score = 111 bits (277), Expect = 9e-23, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L GY++ + + V G + Q + LT Sbjct: 106 LRAGVAGYLLKDASRREIIGAVRQVLRGDAFLNPDLVMQTLRRLASATPDDEPPVEPLTA 165 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L G T+ EIA +L +S TV ++ KL +R QA +A+ G + Sbjct: 166 REQQVLKLLMQGKTNREIARELIISPGTVKVHVEHIIAKLGVSDRTQAAVRALELGLVS 224 >gi|62180524|ref|YP_216941.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224583549|ref|YP_002637347.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62128157|gb|AAX65860.1| transcriptional regulator of ftsQAZ gene cluster (LuxR/UhpA family) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|224468076|gb|ACN45906.1| cell-division regulatory protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322715000|gb|EFZ06571.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 240 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 79/236 (33%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ ++ ++ L R++ F Y + P + I P Sbjct: 15 LRFQEMAAAEDFYTELQYQTQRLE---FDYYALCVRHPVPFTRPKI-------SLRTTYP 64 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y + F + L P + + V+ Q G+ V Sbjct: 65 PAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124 Query: 124 LGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L G++ + L + +EV + + ++ A ++RE Sbjct: 125 LPNRALGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|188491931|ref|ZP_02999201.1| regulatory protein SdiA [Escherichia coli 53638] gi|260855896|ref|YP_003229787.1| DNA-binding transcriptional activator SdiA [Escherichia coli O26:H11 str. 11368] gi|331653323|ref|ZP_08354328.1| regulatory protein SdiA [Escherichia coli M718] gi|188487130|gb|EDU62233.1| regulatory protein SdiA [Escherichia coli 53638] gi|257754545|dbj|BAI26047.1| DNA-binding transcriptional activator SdiA [Escherichia coli O26:H11 str. 11368] gi|315617861|gb|EFU98459.1| regulatory protein sdiA [Escherichia coli 3431] gi|323152751|gb|EFZ39023.1| regulatory protein sdiA [Escherichia coli EPECa14] gi|331049421|gb|EGI21493.1| regulatory protein SdiA [Escherichia coli M718] Length = 240 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + + Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFNEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|300914706|ref|ZP_07132022.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X561] gi|307724060|ref|YP_003903811.1| LuxR family two component transcriptional regulator [Thermoanaerobacter sp. X513] gi|320115614|ref|YP_004185773.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|300889641|gb|EFK84787.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X561] gi|307581121|gb|ADN54520.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X513] gi|319928705|gb|ADV79390.1| response regulator receiver [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 205 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETSC 181 L GY++ +E+ L + +G Y + +E + + ++LT RE Sbjct: 91 LKLGVEGYILKDAEYDDLIKAIKTIYNGGVY-IHPSLMEEIDNIDQETLKKDLTPREIEI 149 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+L GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 150 LKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIY 195 >gi|167037195|ref|YP_001664773.1| two component LuxR family transcriptional regulator [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040665|ref|YP_001663650.1| two component LuxR family transcriptional regulator [Thermoanaerobacter sp. X514] gi|166854905|gb|ABY93314.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter sp. X514] gi|166856029|gb|ABY94437.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 208 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETSC 181 L GY++ +E+ L + +G Y + +E + + ++LT RE Sbjct: 94 LKLGVEGYILKDAEYDDLIKAIKTIYNGGVY-IHPSLMEEIDNIDQETLKKDLTPREIEI 152 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+L GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 153 LKLISKGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIY 198 >gi|47177072|ref|YP_015683.1| hypothetical protein pHCG3_p118 [Oligotropha carboxidovorans OM5] gi|47115463|emb|CAG28516.1| probable TraR [Oligotropha carboxidovorans OM5] Length = 239 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 44/217 (20%), Positives = 71/217 (32%), Gaps = 10/217 (4%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 +++ ++ F + R C L Y + + D + Sbjct: 29 QALRHFCESNGFDRFA-----HLNVRSTETCVLTTYPAEWQRLYFDKKYALIDPVVISAK 83 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML 141 + W + + R +G++ P+R F + SE + Sbjct: 84 RNMEIFSWSQDDASKYSKDVKRF-FREADDFGIRSGLSIPIRTPFGGTAILTLASEQRRV 142 Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEK 197 I + A V L + ++ R LT RE +CL A G T EIA+ Sbjct: 143 DFAGIQDTVRAMNAVAFAHAHLNRVAAAPCRRTKYELTPREVTCLTWASLGKTMSEIADL 202 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + V TV YL A KL N A+ A+ I Sbjct: 203 LQIDVRTVRNYLDLAREKLGGSNIAHAVRLAVMQHLI 239 >gi|167742620|ref|ZP_02415394.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 14] gi|167914947|ref|ZP_02502038.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 112] gi|167922782|ref|ZP_02509873.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei BCC215] Length = 210 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 66/215 (30%), Gaps = 9/215 (4%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 + + FP I + NY + D + Sbjct: 1 MTRAAATLGYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAVKAALGS 60 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLML 141 P+ W +S G + R G + + + + Sbjct: 61 DRPVTWS-----APANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRTQDPIDT 115 Query: 142 ANEVIIE--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 A + E H +LT RET L+ DG T+ EIA L Sbjct: 116 AEKFRNESIVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILS 175 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TVN ++ + KL + N+IQA+AKA G + Sbjct: 176 ISESTVNFHVKNIVSKLGSTNKIQAVAKAALMGML 210 >gi|229033988|ref|ZP_04188939.1| Two-component response regulator [Bacillus cereus AH1271] gi|228728327|gb|EEL79352.1| Two-component response regulator [Bacillus cereus AH1271] Length = 189 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|228917960|ref|ZP_04081496.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841757|gb|EEM86868.1| Two-component response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 189 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|229199478|ref|ZP_04326139.1| Two-component response regulator [Bacillus cereus m1293] gi|228583883|gb|EEK42040.1| Two-component response regulator [Bacillus cereus m1293] Length = 189 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|46275753|dbj|BAD15091.1| probable transcriptional regulator [Pseudomonas azotoformans] Length = 202 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 17/178 (9%) Query: 72 YGDDFLFHFNSG-LLPIIWQSIQEE-----TVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 Y D + H + P +W + +I+ G++ P+ L Sbjct: 25 YQIDPVQHLALSRVSPFVWSYDVKADTPLQKIIDPCHAPVSSYLHDQQLTCGVSVPIHLP 84 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC--YQVITDFLE-----LFKK--RSSAARNLTE 176 G+ T A V+ +A + +I+ L+ LF K R+ +LT+ Sbjct: 85 RG--GFASLTGLRTGNARNVLQDAQQTLSDFGLISHALQEAAYPLFSKELRTYPHIHLTK 142 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE CL+ A DG T+ EIA +L S+ V +L SA KL A NR+QA+ +A + + Sbjct: 143 RERECLKWAADGLTAAEIATQLSRSLAVVTLHLASAMHKLGAKNRVQAVVRATHYRLL 200 >gi|320198610|gb|EFW73210.1| DNA-binding transcriptional activator SdiA [Escherichia coli EC4100B] Length = 240 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 75/207 (36%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY + D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVNYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|47569776|ref|ZP_00240448.1| two-component response regulator yocG [Bacillus cereus G9241] gi|47553572|gb|EAL11951.1| two-component response regulator yocG [Bacillus cereus G9241] Length = 189 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAASIRNVMRGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|206562110|ref|YP_002232873.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] gi|198038150|emb|CAR54100.1| N-acylhomoserine lactone dependent regulatory protein [Burkholderia cenocepacia J2315] Length = 262 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 73/214 (34%), Gaps = 20/214 (9%) Query: 38 INSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGL------------- 84 ++++L FPR + L Y D ++ H+ Sbjct: 50 VSASLGFPRFAISRVSRRHTGNGRAMAVETLCARYPDHWVAHYAQRDYGPVDPVHRMAFA 109 Query: 85 --LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 P W I+ IE Q + +G++ P+R V S + Sbjct: 110 RATPYRWADIRGLNRIE---QRVLGEARDAGLTSGVSIPLRETNGDILLVNLASPSPEIK 166 Query: 143 NEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 EV + + + L K R A L+ R+ CL G +S IA +G+ Sbjct: 167 TEVHMRLASSIGALFHQELHRLMKPHRPEPALELSPRQQECLAWVARGKSSWAIASIVGI 226 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S HTV+ ++ A L +R A A+ G I Sbjct: 227 SPHTVDYHIAEAMKILGINSRTAAAVHAVTTGLI 260 >gi|191168286|ref|ZP_03030079.1| regulatory protein SdiA [Escherichia coli B7A] gi|194429919|ref|ZP_03062429.1| regulatory protein SdiA [Escherichia coli B171] gi|218554500|ref|YP_002387413.1| DNA-binding transcriptional activator SdiA [Escherichia coli IAI1] gi|260844320|ref|YP_003222098.1| DNA-binding transcriptional activator SdiA [Escherichia coli O103:H2 str. 12009] gi|260868508|ref|YP_003234910.1| DNA-binding transcriptional activator SdiA [Escherichia coli O111:H- str. 11128] gi|293410275|ref|ZP_06653851.1| conserved hypothetical protein [Escherichia coli B354] gi|300818660|ref|ZP_07098868.1| autoinducer binding domain protein [Escherichia coli MS 107-1] gi|300925008|ref|ZP_07140932.1| autoinducer binding domain protein [Escherichia coli MS 182-1] gi|301327706|ref|ZP_07220912.1| autoinducer binding domain protein [Escherichia coli MS 78-1] gi|331668610|ref|ZP_08369458.1| regulatory protein SdiA [Escherichia coli TA271] gi|331677801|ref|ZP_08378476.1| regulatory protein SdiA [Escherichia coli H591] gi|190901658|gb|EDV61414.1| regulatory protein SdiA [Escherichia coli B7A] gi|194412008|gb|EDX28320.1| regulatory protein SdiA [Escherichia coli B171] gi|218361268|emb|CAQ98852.1| DNA-binding transcriptional activator [Escherichia coli IAI1] gi|257759467|dbj|BAI30964.1| DNA-binding transcriptional activator SdiA [Escherichia coli O103:H2 str. 12009] gi|257764864|dbj|BAI36359.1| DNA-binding transcriptional activator SdiA [Escherichia coli O111:H- str. 11128] gi|284921829|emb|CBG34902.1| regulatory protein [Escherichia coli 042] gi|291470743|gb|EFF13227.1| conserved hypothetical protein [Escherichia coli B354] gi|300418843|gb|EFK02154.1| autoinducer binding domain protein [Escherichia coli MS 182-1] gi|300528832|gb|EFK49894.1| autoinducer binding domain protein [Escherichia coli MS 107-1] gi|300845750|gb|EFK73510.1| autoinducer binding domain protein [Escherichia coli MS 78-1] gi|323158600|gb|EFZ44614.1| regulatory protein sdiA [Escherichia coli E128010] gi|323180833|gb|EFZ66373.1| regulatory protein sdiA [Escherichia coli 1180] gi|331063804|gb|EGI35715.1| regulatory protein SdiA [Escherichia coli TA271] gi|331074261|gb|EGI45581.1| regulatory protein SdiA [Escherichia coli H591] Length = 240 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|256022426|ref|ZP_05436291.1| DNA-binding transcriptional activator SdiA [Escherichia sp. 4_1_40B] Length = 240 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + + Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFNEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|228949073|ref|ZP_04111345.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810646|gb|EEM56995.1| Two-component response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 189 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|221633642|ref|YP_002522868.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] gi|221156159|gb|ACM05286.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] Length = 245 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 16/125 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------------ACYQVITDFLELFKKRSSAA- 171 + Y E L + + A G +V+ F EL + +++ Sbjct: 98 AGASAYCTKDIEPEQLIDVITRVARGEYLINEMVLSRPFVASRVLDQFRELSRLDRTSSG 157 Query: 172 --RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L GY+++EIA+ L +S TV ++ S KL +R QA+ A+ Sbjct: 158 FFSPLTPREIEILDCVARGYSNKEIAQALNISDQTVKNHITSILRKLAVNDRTQAVIYAL 217 Query: 230 RFGYI 234 R G+I Sbjct: 218 RHGWI 222 >gi|18104535|gb|AAL59595.1|AF393621_2 CinR [Rhizobium etli] Length = 241 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 61/189 (32%), Gaps = 15/189 (7%) Query: 58 DLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 P+ + Y D + LP W ++ E+ L + Sbjct: 54 PFVRTTYPDAWVSRYLLNSYVKVDPIVKQGFERQLPFDWSEVE--PTPEAYAMLVDAQKH 111 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSE-----FLMLANEVIIEAHGACYQVITDFLELFK 165 G+ G + PV + + + + L E + + + Sbjct: 112 GIGG-NGYSIPVADKAQRRALLSMNARIPADHWAELVRRCRNEWIEIAHLIHQKAVYELY 170 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + L+ RE CL G ++I+ LG+S HT YL +A KL A Sbjct: 171 GENDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAA 230 Query: 226 AKAIRFGYI 234 ++A++ I Sbjct: 231 SRAVQLRII 239 >gi|86356279|ref|YP_468171.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280381|gb|ABC89444.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 234 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 P+ + ++ + E I + ++ E + R LT+RE+ Sbjct: 120 IPLFTPEGRRYCLVLSGEREEPDQGEIADMLLDAMRIFDKLYEEILTPEMSGR-LTQRES 178 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++ +G TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 179 EIVKWTSEGKTSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVS 234 >gi|256751296|ref|ZP_05492176.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus CCSD1] gi|256749851|gb|EEU62875.1| two component transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus CCSD1] Length = 205 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 3/106 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETSC 181 L GY++ +E+ L + +G Y + +E + + ++LT RE Sbjct: 91 LKLGVEGYILKDAEYDDLIKAIKTIYNGGVY-IHPSLMEEIDNIDQETLKKDLTPREIEI 149 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+L +GY+++EIA+KL LS TV ++ + KLD +R QA Sbjct: 150 LKLISNGYSNKEIAQKLFLSEKTVKNHVYNIFKKLDVKDRTQAAIY 195 >gi|320160955|ref|YP_004174179.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994808|dbj|BAJ63579.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 217 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSA----AR 172 L GY++ L V G + +V+ +F + S+ Sbjct: 95 LRAGAIGYLLKDVSSDNLFEAVRAAYRGEYFLQPSITAKVVAEFARSPRPSSAKMAELTE 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L L +G ++ EIAE+L +S TV +L S KL A +R+QA+ +A G Sbjct: 155 PLSPREIEVLFLVAEGKSNREIAEQLVISEGTVKNHLSSILSKLGAKDRLQAVIRAREAG 214 Query: 233 YI 234 + Sbjct: 215 IL 216 >gi|307946119|ref|ZP_07661454.1| transcriptional regulator [Roseibium sp. TrichSKD4] gi|307769783|gb|EFO29009.1| transcriptional regulator [Roseibium sp. TrichSKD4] Length = 233 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 91/235 (38%), Gaps = 10/235 (4%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRR--QQLICELHNYDL 59 SE + S L ++++ ++ R A + + + L P R L+ D Sbjct: 5 SELKNKLRAVSEANAAHHVLDILESNLR-RMGATHVLITGLPMPNRPIDSLVHRFRWPDQ 63 Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 + I + + D L + ++W +E S L+ EG + + Sbjct: 64 RNDGIESTSLSA-NDSALMLGLASNRAMVWTI--SAGDMEHSDLLAAAGEGNQV----VI 116 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 PV +V + L + +L L+ RE Sbjct: 117 VPVTELHPFQAFVYASGPSLQANKWELAGLEVLSNAAFARLRDLGVVSGQRPGALSTRER 176 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G T+ EIA+ L +S TV+A+L +A+VKL+A N+ + +A+R+G I Sbjct: 177 KVLELTAYGKTAGEIADLLDISQRTVHAHLQNASVKLNASNKTHTVVEALRYGQI 231 >gi|229187578|ref|ZP_04314718.1| Two-component response regulator [Bacillus cereus BGSC 6E1] gi|228595945|gb|EEK53625.1| Two-component response regulator [Bacillus cereus BGSC 6E1] Length = 189 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S L+ + G ++ D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLSASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|293415226|ref|ZP_06657869.1| regulatory protein sdiA [Escherichia coli B185] gi|291432874|gb|EFF05853.1| regulatory protein sdiA [Escherichia coli B185] Length = 244 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 43 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 102 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 103 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLK 157 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 158 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNF 217 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 218 HQKNMQKKINAPNKTQVACYAAATGLI 244 >gi|296130675|ref|YP_003637925.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022490|gb|ADG75726.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 226 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 19/131 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSA---------- 170 L +G+++ ++ L + + A G +V+ L+LF A Sbjct: 94 LRAGASGFLLKSARPDELVDAIRTVAAGTSVVAPRVLRRMLDLFAPHLPAGAEDGDPQER 153 Query: 171 ------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R LT RE L+L +G ++ EIA +L +S TV ++G+ KL A +R+QA Sbjct: 154 TGPHPRLRGLTPRELDVLRLIAEGASNAEIAAELVVSETTVKTHVGNVFAKLGARDRVQA 213 Query: 225 IAKAIRFGYIC 235 + A G + Sbjct: 214 VIIAYECGVVT 224 >gi|328555254|gb|AEB25746.1| two-component response regulator [Bacillus amyloliquefaciens TA208] Length = 229 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 53/130 (40%), Gaps = 20/130 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L GY++ + L V + A G Y ++ +F L SA Sbjct: 96 LKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEV 155 Query: 174 ----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R Q Sbjct: 156 YPEIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQ 215 Query: 224 AIAKAIRFGY 233 A+ AI+ G+ Sbjct: 216 AVVVAIKNGW 225 >gi|312973873|ref|ZP_07788045.1| regulatory protein sdiA [Escherichia coli 1827-70] gi|310332468|gb|EFP99703.1| regulatory protein sdiA [Escherichia coli 1827-70] Length = 221 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 20 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 79 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 80 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLK 134 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 135 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 194 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 195 HQKNMQKKINAPNKTQVACYAAATGLI 221 >gi|20808107|ref|NP_623278.1| response regulator [Thermoanaerobacter tengcongensis MB4] gi|254479031|ref|ZP_05092387.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] gi|20516692|gb|AAM24882.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Thermoanaerobacter tengcongensis MB4] gi|214035027|gb|EEB75745.1| response regulator receiver domain protein [Carboxydibrachium pacificum DSM 12653] Length = 208 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 3/106 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSC 181 L GY++ +E+ L V +G Y + ++ + + + LT RE Sbjct: 94 LKLGVEGYILKDAEYDDLIKAVRTIYNGGVY-IHPSLMQEIEDSNEELLRKELTPREIEI 152 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+L GY+++EIA+KL LS TV ++ + KL +R QA Sbjct: 153 LKLLSQGYSNKEIAQKLFLSEKTVKNHVYNIFRKLGVKDRTQAAIY 198 >gi|229082566|ref|ZP_04215029.1| Two-component response regulator [Bacillus cereus Rock4-2] gi|228700998|gb|EEL53521.1| Two-component response regulator [Bacillus cereus Rock4-2] Length = 189 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G +V D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REVSQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|315649841|ref|ZP_07902924.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315274815|gb|EFU38196.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 240 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 25/138 (18%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA---- 171 L NGY++ E L N + G + ++I + + A Sbjct: 102 TLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLRRMTYVNEAGAMAES 161 Query: 172 --------------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LT RE L+L +G +++ I E L +S TV ++ S K++ Sbjct: 162 GTREAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKME 221 Query: 218 AVNRIQAIAKAIRFGYIC 235 +R QA+ +I++G++ Sbjct: 222 VDDRTQAVINSIKYGWVT 239 >gi|206970462|ref|ZP_03231415.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|206735039|gb|EDZ52208.1| DNA-binding response regulator [Bacillus cereus AH1134] Length = 200 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G +V D + + L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REVSQDLMFGLWQEQ---NPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 152 KEGKTANEIAKTLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200 >gi|52082083|ref|YP_080874.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52787473|ref|YP_093302.1| DegU [Bacillus licheniformis ATCC 14580] gi|319647951|ref|ZP_08002169.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2] gi|52005294|gb|AAU25236.1| two-component response regulator [Bacillus licheniformis ATCC 14580] gi|52349975|gb|AAU42609.1| DegU [Bacillus licheniformis ATCC 14580] gi|56310547|emb|CAE82205.1| two-component response regulator [Bacillus licheniformis] gi|106880136|emb|CAJ70739.1| two component response regulator [Bacillus licheniformis] gi|106880142|emb|CAJ70744.1| two component response regulator [Bacillus licheniformis] gi|317390292|gb|EFV71101.1| transcriptional regulatory protein degU [Bacillus sp. BT1B_CT2] Length = 229 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L GY++ + L V + A G Y ++ +F L S+ Sbjct: 96 LKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSSHAQHEV 155 Query: 174 ----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R Q Sbjct: 156 YPEIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQ 215 Query: 224 AIAKAIRFGYI 234 A+ AI+ G++ Sbjct: 216 AVVVAIKNGWV 226 >gi|229094465|ref|ZP_04225535.1| Two-component response regulator [Bacillus cereus Rock3-42] gi|228688929|gb|EEL42758.1| Two-component response regulator [Bacillus cereus Rock3-42] Length = 189 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTASEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|261409652|ref|YP_003245893.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329928696|ref|ZP_08282545.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5] gi|261286115|gb|ACX68086.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328937477|gb|EGG33895.1| putative oxygen regulatory protein NreC [Paenibacillus sp. HGF5] Length = 240 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 25/138 (18%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA---- 171 L NGY++ E L N + G + ++I + + A Sbjct: 102 TLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIHQLRRMTYVNEAGAMAES 161 Query: 172 --------------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LT RE L+L +G +++ I E L +S TV ++ S K++ Sbjct: 162 GSREAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKME 221 Query: 218 AVNRIQAIAKAIRFGYIC 235 +R QA+ +I++G++ Sbjct: 222 VDDRTQAVINSIKYGWVT 239 >gi|126458323|ref|YP_001075604.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 1106a] gi|134283391|ref|ZP_01770091.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|167723653|ref|ZP_02406889.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei DM98] gi|167819785|ref|ZP_02451465.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 91] gi|167849631|ref|ZP_02475139.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei B7210] gi|167898230|ref|ZP_02485632.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei 7894] gi|167906588|ref|ZP_02493793.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia pseudomallei NCTC 13177] gi|237510070|ref|ZP_04522785.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242312988|ref|ZP_04812005.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254190270|ref|ZP_04896779.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254193498|ref|ZP_04899932.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|254262913|ref|ZP_04953778.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254300529|ref|ZP_04967975.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|126232091|gb|ABN95504.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|134245140|gb|EBA45234.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 305] gi|156105358|gb|ABU49178.1| BpsR2 [Burkholderia pseudomallei] gi|157810414|gb|EDO87584.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157937947|gb|EDO93617.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|169650251|gb|EDS82944.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei S13] gi|235002275|gb|EEP51699.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242136227|gb|EES22630.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254213915|gb|EET03300.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 236 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 65/207 (31%), Gaps = 9/207 (4%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 + FP I + NY + D + P+ W Sbjct: 35 GYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAVKAALGSDRPVTWS- 93 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIE- 148 +S G + R G + + + + A + E Sbjct: 94 ----APANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRTQDPIDTAEKFRNES 149 Query: 149 -AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 H +LT RET L+ DG T+ EIA L +S TVN Sbjct: 150 IVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILSISESTVNF 209 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL + N+IQA+AKA G + Sbjct: 210 HVKNIVSKLGSTNKIQAVAKAALMGML 236 >gi|229112766|ref|ZP_04242298.1| Two-component response regulator [Bacillus cereus Rock1-15] gi|229153515|ref|ZP_04281693.1| Two-component response regulator [Bacillus cereus m1550] gi|228630119|gb|EEK86770.1| Two-component response regulator [Bacillus cereus m1550] gi|228670600|gb|EEL25912.1| Two-component response regulator [Bacillus cereus Rock1-15] Length = 189 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G +V D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REVSQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGWI 189 >gi|259415201|ref|ZP_05739123.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] gi|259349111|gb|EEW60865.1| transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] Length = 239 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 65/187 (34%), Gaps = 15/187 (8%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 +P + Y D + + P+ W+ + + ++ + G + Sbjct: 53 CSTLPVAWQDRYSAMGYHRIDPVVIGCYTAFHPVDWRDLDWSARLAAAFRKDSLAFG--V 110 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------ 167 G + PVR + T + H ++ ++ Sbjct: 111 GSQGYSVPVRGPAGQYAVFSITKTCKGEVWDKFTRKHSRDLILVAHYVNRRALDFEMSFY 170 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L+ RE+ L L +G + AE + +S HT+ Y+ A KL A N A+A+ Sbjct: 171 PLPEQPLSMRESEALSLLAEGMSRARAAEAMDISEHTLRVYIEGARSKLQAQNTTHAVAR 230 Query: 228 AIRFGYI 234 A+ G I Sbjct: 231 AVTMGLI 237 >gi|295704610|ref|YP_003597685.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294802269|gb|ADF39335.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 212 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L +GY + S+ L + +G ++T + +K+ + +LT+ Sbjct: 95 LEAGASGYQLKESDPDELVAAIRKLMNGENQLHPKVTTHLLTRLTKSSEKKVNFIDHLTK 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+ G +++EI L ++ TV ++ + KL +R QA A++ G Sbjct: 155 REKDVLKEIAKGKSNKEIGAALHITEKTVKTHVSNILSKLGVQDRTQAALYAVQHGI 211 >gi|229072819|ref|ZP_04206018.1| Two-component response regulator [Bacillus cereus F65185] gi|228710310|gb|EEL62285.1| Two-component response regulator [Bacillus cereus F65185] Length = 189 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G +V D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REVSQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGWI 189 >gi|229918078|ref|YP_002886724.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] gi|229469507|gb|ACQ71279.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] Length = 211 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 5/121 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLE-LFKKRSSAARNL 174 +PV + YV+ T+ +A+ + A G QV LE L + +L Sbjct: 90 VYPV-IEAGAMSYVLKTANANEIADAIRQTAAGNPVMAAQVTGKMLERLRHPEMTLHESL 148 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL +G +++ IA++L +S+ TV ++ + KLD +R QA+ A + + Sbjct: 149 TAREREILQLMAEGKSNQVIADELFISLKTVKTHVSNILTKLDVYDRTQAVVYAFQHNLV 208 Query: 235 C 235 Sbjct: 209 S 209 >gi|52140211|ref|YP_086620.1| DNA-binding response regulator [Bacillus cereus E33L] gi|51973680|gb|AAU15230.1| DNA-binding response regulator [Bacillus cereus E33L] Length = 200 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEDLAASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 152 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200 >gi|53722204|ref|YP_111189.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|76817623|ref|YP_335301.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei 1710b] gi|126444655|ref|YP_001062648.1| ATP-dependent transcriptional regulator LuxR [Burkholderia pseudomallei 668] gi|52212618|emb|CAH38644.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei K96243] gi|76582096|gb|ABA51570.1| N-acyl-homoserine lactone dependent regulatory protein [Burkholderia pseudomallei 1710b] gi|126224146|gb|ABN87651.1| autoinducer-binding transcriptional regulator, LuxR family [Burkholderia pseudomallei 668] Length = 234 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 65/207 (31%), Gaps = 9/207 (4%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 + FP I + NY + D + P+ W Sbjct: 33 GYEYAAYGMRRPFPISNPPILMVSNYPARWQERYIEARFANIDGAVKAALGSDRPVTWS- 91 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVIIE- 148 +S G + R G + + + + A + E Sbjct: 92 ----APANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLTLSRTQDPIDTAEKFRNES 147 Query: 149 -AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 H +LT RET L+ DG T+ EIA L +S TVN Sbjct: 148 IVHWLANVAHASMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILSISESTVNF 207 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL + N+IQA+AKA G + Sbjct: 208 HVKNIVSKLGSTNKIQAVAKAALMGML 234 >gi|167839810|ref|ZP_02466494.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 236 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 63/209 (30%), Gaps = 13/209 (6%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 + FP I + NY + D + P+ W Sbjct: 35 GYEYAAYGMRRPFPISNPQILMVSNYPARWQERYIEARFANVDGAVKAALGSDRPVTWS- 93 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE------FLMLANEV 145 +S G + R G + + NE Sbjct: 94 ----APANASKSAFWAEALSFGIAHGWSSASRGADGAIGVLSLSRTQGPIDTAEKFRNES 149 Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 I+ +LT RET L+ DG T+ EIA L +S TV Sbjct: 150 IVHWLANVAHA--SMAPFLPAADEFDPDLTRRETDVLKWTADGKTAYEIALILSISESTV 207 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 N ++ + KL + N+IQA+AKA G + Sbjct: 208 NFHVKNIVSKLGSTNKIQAVAKAALMGML 236 >gi|190892657|ref|YP_001979199.1| autoinducer transcriptional regulator protein [Rhizobium etli CIAT 652] gi|190697936|gb|ACE92021.1| autoinducer transcriptional regulator protein [Rhizobium etli CIAT 652] Length = 260 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 60/189 (31%), Gaps = 15/189 (7%) Query: 58 DLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 P+ + Y D + LP W ++ E+ L + Sbjct: 73 PFVRTTYPDAWVSRYLLNSYVKVDPIVKQGFERQLPFDWSEVE--PTPEAYAMLVDAQKH 130 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSE-----FLMLANEVIIEAHGACYQVITDFLELFK 165 G+ G + PV + + + + L E + + + Sbjct: 131 GIGG-NGYSIPVADKAQRRALLSMNARIPADGWSELVRRCRNEWIEIAHLIHQKAVYELY 189 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE CL G ++I+ LG+S HT YL +A KL A Sbjct: 190 GEHDPVPALSPREIECLHWTALGKDYKDISVILGISEHTTRDYLKTARFKLGCATISAAA 249 Query: 226 AKAIRFGYI 234 ++A++ I Sbjct: 250 SRAVQLRII 258 >gi|259505660|ref|ZP_05748562.1| two component system response regulator [Corynebacterium efficiens YS-314] gi|259166742|gb|EEW51296.1| two component system response regulator [Corynebacterium efficiens YS-314] Length = 212 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 43/109 (39%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G L + + +LT RE L+L Sbjct: 104 AGALGYLLKDAPPNELLAAVRSAAEGDSTLSPMVANRLMTRVRTPKTSLTPRELEVLKLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI L LS TV ++L KL +R A+A A G + Sbjct: 164 AGGSSNREIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGLL 212 >gi|90423713|ref|YP_532083.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90105727|gb|ABD87764.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 240 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 73/196 (37%), Gaps = 16/196 (8%) Query: 52 CELHNYDLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQL 104 CE N L + ++ Y D + +LPI W S++ T + Q Sbjct: 45 CEQPNPVLLL-TYDDAWVKRYVEQDYFGIDPVVVAGRDAVLPIDWMSVEHAT--PQARQF 101 Query: 105 SVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164 E + G P+R + T+ ++ + ++ +L Sbjct: 102 FAEAESYGVGRHGFTLPIRGPAAERALFTITTNATDDHWHRWRFSYLKDFHLLAHYLHDR 161 Query: 165 KKR------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 R A R L+ RE CLQ G T +IA L LS V+ YL +A KL+ Sbjct: 162 AMRLAGLRLDHAMRPLSRREQQCLQGLVHGRTPGQIAGDLELSASAVHGYLRTARRKLNC 221 Query: 219 VNRIQAIAKAIRFGYI 234 QAIAKA+R + Sbjct: 222 ATHEQAIAKAVRLELL 237 >gi|310644345|ref|YP_003949104.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309249296|gb|ADO58863.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 240 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 25/138 (18%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA---- 171 L NGY++ E L N + G + ++I + + A Sbjct: 102 TLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLRRMTYLNETGAMAEG 161 Query: 172 --------------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LT RE L+L +G +++ I E L +S TV ++ S K++ Sbjct: 162 HTKEAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKME 221 Query: 218 AVNRIQAIAKAIRFGYIC 235 +R QA+ +I++G++ Sbjct: 222 VDDRTQAVINSIKYGWVT 239 >gi|308071115|ref|YP_003872720.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681] gi|305860394|gb|ADM72182.1| Transcriptional regulatory protein degU [Paenibacillus polymyxa E681] Length = 240 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 25/138 (18%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA---- 171 L NGY++ E L N + G + ++I + + A Sbjct: 102 TLRKGANGYLLKDMEAESLINAIRSVHEGYAFIHPKVTGKLIQQLRRMTYLNETGAMAEG 161 Query: 172 --------------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LT RE L+L +G +++ I E L +S TV ++ S K++ Sbjct: 162 HTKEAGVKFVAGENNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKME 221 Query: 218 AVNRIQAIAKAIRFGYIC 235 +R QA+ +I++G++ Sbjct: 222 VDDRTQAVINSIKYGWVT 239 >gi|166798333|gb|ABY89695.1| transcriptional regulator [Mesorhizobium loti] Length = 241 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 70/230 (30%), Gaps = 15/230 (6%) Query: 5 TLTGKKSSSLQ--ELSPRLHLIQNRIKARNFALYT-INSALDFPRRQQLICELHNYDLDS 61 TL + S S+ + L FA + ++ + PR Sbjct: 7 TLLEQLSLSVDEVDFHNALANAAGAFDIPAFAYLSLVSDGVTKPRLISNYHSGWTSHYLR 66 Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 I D + P W I Q G+ P Sbjct: 67 HQYERI------DPVIERARCSECPFQWGRGFGHAGISKREQQLFDEAAEFGICCGLTIP 120 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLT 175 + + F ++ L + I E + +++ + +R + +LT Sbjct: 121 LVDRRGGVAAMTFAADRLDPSFMRIAEQYEQALEIMATCFHIGVRRKLSGGLAVDGVSLT 180 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RE CL+ G ++ EI LG+ T +L +A KL + QA+ Sbjct: 181 PREYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230 >gi|150390890|ref|YP_001320939.1| two component LuxR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149950752|gb|ABR49280.1| two component transcriptional regulator, LuxR family [Alkaliphilus metalliredigens QYMF] Length = 217 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 9/114 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR--NLTER 177 NGYV+ +E L + A G Y Q++ +F R LT+R Sbjct: 99 GANGYVLKDAESDSLIKAIRDVAMGESYIHPSLASQLVKEFNRRDDHHDKEPREGKLTKR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L L +G ++EIA L +S TV ++ + K+ +R QA A + Sbjct: 159 EYEVLTLIAEGQNNKEIASNLFISEKTVKNHVSNIFKKIHVNDRTQAAIYAYKH 212 >gi|301029367|ref|ZP_07192464.1| autoinducer binding domain protein [Escherichia coli MS 196-1] gi|301645566|ref|ZP_07245495.1| autoinducer binding domain protein [Escherichia coli MS 146-1] gi|307138583|ref|ZP_07497939.1| DNA-binding transcriptional activator SdiA [Escherichia coli H736] gi|331642538|ref|ZP_08343673.1| regulatory protein SdiA [Escherichia coli H736] gi|299877793|gb|EFI86004.1| autoinducer binding domain protein [Escherichia coli MS 196-1] gi|301076098|gb|EFK90904.1| autoinducer binding domain protein [Escherichia coli MS 146-1] gi|323186308|gb|EFZ71658.1| regulatory protein sdiA [Escherichia coli 1357] gi|323948203|gb|EGB44191.1| autoinducer binding domain-containing protein [Escherichia coli H120] gi|324017952|gb|EGB87171.1| autoinducer binding domain protein [Escherichia coli MS 117-3] gi|324118970|gb|EGC12859.1| autoinducer binding domain-containing protein [Escherichia coli E1167] gi|331039336|gb|EGI11556.1| regulatory protein SdiA [Escherichia coli H736] Length = 240 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|229051023|ref|ZP_04194571.1| Two-component response regulator [Bacillus cereus AH676] gi|229147892|ref|ZP_04276233.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228635542|gb|EEK92031.1| Two-component response regulator [Bacillus cereus BDRD-ST24] gi|228722332|gb|EEL73729.1| Two-component response regulator [Bacillus cereus AH676] Length = 189 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G +V D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REVSQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGWI 189 >gi|218695523|ref|YP_002403190.1| DNA-binding transcriptional activator SdiA [Escherichia coli 55989] gi|300904802|ref|ZP_07122630.1| autoinducer binding domain protein [Escherichia coli MS 84-1] gi|218352255|emb|CAU98011.1| DNA-binding transcriptional activator [Escherichia coli 55989] gi|300403316|gb|EFJ86854.1| autoinducer binding domain protein [Escherichia coli MS 84-1] gi|315257253|gb|EFU37221.1| autoinducer binding domain protein [Escherichia coli MS 85-1] Length = 240 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|209919338|ref|YP_002293422.1| DNA-binding transcriptional activator SdiA [Escherichia coli SE11] gi|293446298|ref|ZP_06662720.1| regulatory protein sdiA [Escherichia coli B088] gi|209912597|dbj|BAG77671.1| transcriptional regulator of ftsQAZ gene cluster [Escherichia coli SE11] gi|291323128|gb|EFE62556.1| regulatory protein sdiA [Escherichia coli B088] Length = 244 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 43 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 102 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 103 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLK 157 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 158 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 217 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 218 HQKNMQKKINAPNKTQVACYAAATGLI 244 >gi|6716341|gb|AAF26601.1|AF110468_3 PsyR [Pseudomonas syringae pv. tabaci] Length = 246 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 66/191 (34%), Gaps = 22/191 (11%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS--VRLEGGL 112 + P+ +++Y D + H + P W+ + S + ++ Sbjct: 60 SNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREAE----CCSGRRTDDFLKRSAKY 115 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLM--LANEVIIEAHGACYQVITDFLELFKKRSS- 169 +G F + + + + +A +I L K R+ Sbjct: 116 QLSSGATFTLHDASWLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPH 175 Query: 170 ------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 A L+ RET L+ G + EIAE +S TV ++ + + KL Q Sbjct: 176 ELFPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLKVRTAKQ 235 Query: 224 AIAKAIRFGYI 234 A+ KAI G + Sbjct: 236 AVYKAINMGMV 246 >gi|301018234|ref|ZP_07182749.1| autoinducer binding domain protein [Escherichia coli MS 69-1] gi|300399821|gb|EFJ83359.1| autoinducer binding domain protein [Escherichia coli MS 69-1] Length = 240 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRSSVREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|317122051|ref|YP_004102054.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592031|gb|ADU51327.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 218 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 11/121 (9%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSA-----ARN 173 +G+V+ E L V + G Y + + ++R + Sbjct: 96 AAGASGFVLKDVEPRTLVEAVRLCCRGEGYVHPTLSARVLNLGTRRRERWTPLGGGIPEP 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL +G ++ EI ++L +S TV ++ S KL +R QA+ AIR G+ Sbjct: 156 LTRREFEVLQLVAEGVSNREIGQRLFISEKTVKNHITSIFRKLGVADRTQAVIHAIREGW 215 Query: 234 I 234 + Sbjct: 216 V 216 >gi|228924099|ref|ZP_04087375.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835589|gb|EEM80954.1| Two-component response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 189 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G +V D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REVSQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|253987738|ref|YP_003039094.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638616|emb|CAR67235.1| similar to probable transcription regulator sdia of escherichia coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779188|emb|CAQ82348.1| similar to probable transcription regulator SdiA of Escherichia coli [Photorhabdus asymbiotica] Length = 242 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 81/219 (36%), Gaps = 21/219 (9%) Query: 29 KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPI- 87 K F+L+++ FP + + +NY ++ D L P+ Sbjct: 32 KISGFSLFSLILKARFPISNREVYFFNNYHESWRNLYIERKYWMIDPTL-----NFRPVP 86 Query: 88 -----IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 IW + ES+GQ + +GI F + G + + Sbjct: 87 PSFSKIW---DLDFFSESNGQELWYVSQKHGFRSGITFGLPAFSGTYGIFSVAGKDGHID 143 Query: 143 NEVIIEAHGACYQVITDFLELFKKRSS-------AARNLTERETSCLQLAGDGYTSEEIA 195 NE + + G V + + + + RE L+ DG TS EIA Sbjct: 144 NETMYKCSGEILGVYIRIIRYLTSHTKYLQFFYVDETSFSNRELEVLRYTADGMTSSEIA 203 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + ++ TV+ +L + KL N+ QAIAKA+ GYI Sbjct: 204 LTICVTKSTVDFHLMNIVKKLGCRNKFQAIAKAVLLGYI 242 >gi|206975821|ref|ZP_03236732.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962842|ref|YP_002341420.1| DNA-binding response regulator [Bacillus cereus AH187] gi|206745915|gb|EDZ57311.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217067023|gb|ACJ81273.1| DNA-binding response regulator [Bacillus cereus AH187] Length = 200 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEDLAASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 152 KEGKTTNEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200 >gi|300951540|ref|ZP_07165374.1| autoinducer binding domain protein [Escherichia coli MS 116-1] gi|300956569|ref|ZP_07168849.1| autoinducer binding domain protein [Escherichia coli MS 175-1] gi|300316616|gb|EFJ66400.1| autoinducer binding domain protein [Escherichia coli MS 175-1] gi|300449215|gb|EFK12835.1| autoinducer binding domain protein [Escherichia coli MS 116-1] gi|323940421|gb|EGB36612.1| autoinducer binding domain-containing protein [Escherichia coli E482] gi|332089650|gb|EGI94752.1| regulatory protein sdiA [Shigella boydii 5216-82] Length = 240 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|229065002|ref|ZP_04200300.1| Two-component response regulator [Bacillus cereus AH603] gi|228716303|gb|EEL68015.1| Two-component response regulator [Bacillus cereus AH603] Length = 189 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA+ + G + I+ EL L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLASAIRNVMKGK--REISQ--ELMFGLWQEQNPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|311070055|ref|YP_003974978.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310870572|gb|ADP34047.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 229 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L GY++ + L V + A G Y ++ +F L SA Sbjct: 96 LKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEV 155 Query: 174 ----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R Q Sbjct: 156 YPEIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVENHVSNILQKMNVNDRTQ 215 Query: 224 AIAKAIRFGYI 234 A+ AI+ G++ Sbjct: 216 AVVVAIKNGWV 226 >gi|295394810|ref|ZP_06805025.1| LuxR family DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972406|gb|EFG48266.1| LuxR family DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 204 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V G + L ++ + +L+ RE LQ Sbjct: 95 AGAQGYLLKDAPPEELTRAVRAVNEGRPVMSDEVTVALTRRLTQPRTSLSARELEILQAV 154 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+T++EIA++L +S TV +L KL NR A+AKA I Sbjct: 155 ATGHTNKEIAQELFISQATVKTHLVHIFDKLGVDNRTSAVAKAREQQLI 203 >gi|322377077|ref|ZP_08051569.1| DNA-binding response regulator VraR [Streptococcus sp. M334] gi|321281790|gb|EFX58798.1| DNA-binding response regulator VraR [Streptococcus sp. M334] Length = 210 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGARGYMLKTSSADELLHAVRKVATGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|149182102|ref|ZP_01860586.1| DegU [Bacillus sp. SG-1] gi|148850204|gb|EDL64370.1| DegU [Bacillus sp. SG-1] Length = 225 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS------- 169 L GY++ + L V + A G Y +I+D+ L + + Sbjct: 95 LKTGALGYLLKEMDSEALIEAVKVVAAGGSYIHPKVTHNLISDYRRLANTQETGGFKQTE 154 Query: 170 ---AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE LQ+ DG ++ I E L +S TV ++ + K++ +R QA+ Sbjct: 155 VRRPLHLLTRRECEVLQMLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQAVV 214 Query: 227 KAIRFGYI 234 I+ G++ Sbjct: 215 TGIKNGWV 222 >gi|30265375|ref|NP_847752.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47778416|ref|YP_022268.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49188186|ref|YP_031439.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|165871303|ref|ZP_02215952.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635735|ref|ZP_02394045.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170688151|ref|ZP_02879362.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708082|ref|ZP_02898530.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651949|ref|ZP_02934532.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190569108|ref|ZP_03022007.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227818115|ref|YP_002818124.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229603443|ref|YP_002869565.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687206|ref|ZP_05151064.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724707|ref|ZP_05186490.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254742263|ref|ZP_05199950.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755822|ref|ZP_05207854.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254762162|ref|ZP_05214008.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30260053|gb|AAP29238.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47552121|gb|AAT34743.2| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49182113|gb|AAT57489.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|164712970|gb|EDR18498.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167528844|gb|EDR91601.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170127055|gb|EDS95934.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667844|gb|EDT18596.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082653|gb|EDT67717.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190559776|gb|EDV13762.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|227003949|gb|ACP13692.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229267851|gb|ACQ49488.1| DNA-binding response regulator [Bacillus anthracis str. A0248] Length = 200 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEDLAASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 152 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200 >gi|257867775|ref|ZP_05647428.1| regulatory protein [Enterococcus casseliflavus EC30] gi|257874102|ref|ZP_05653755.1| regulatory protein [Enterococcus casseliflavus EC10] gi|257801858|gb|EEV30761.1| regulatory protein [Enterococcus casseliflavus EC30] gi|257808266|gb|EEV37088.1| regulatory protein [Enterococcus casseliflavus EC10] Length = 209 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA-ARNLTERETSC 181 GY++ TS +A + G +V T ++ R+ +LT RE Sbjct: 96 AGAAGYLLKTSTAHEIAEAIRATQRGERVLEPEVTTKMMDRLTNRTPILHEDLTNREQEV 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA+ L +++ TV ++ + KL+ +R QA A + G I Sbjct: 156 LLLIAEGKSNQEIADALFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHGLI 208 >gi|297158982|gb|ADI08694.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 235 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK--KRSSAARNL 174 L +G+++ L V + A G ++I +F+ L S L Sbjct: 98 LAAGASGFLLKDMTAERLFEAVRVVAAGDALLAPTVTRRLIGEFVRLRPHTAEPSPLALL 157 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RET L+L +G ++ EIA +L +S TV ++ KL A +R QA+ A FG + Sbjct: 158 TPRETEVLRLIAEGLSNAEIAARLTVSAETVKTHVSRVLAKLGARDRAQAVMLAYEFGLV 217 Query: 235 C 235 Sbjct: 218 V 218 >gi|257876663|ref|ZP_05656316.1| regulatory protein [Enterococcus casseliflavus EC20] gi|325571030|ref|ZP_08146602.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] gi|257810829|gb|EEV39649.1| regulatory protein [Enterococcus casseliflavus EC20] gi|325156115|gb|EGC68301.1| DNA-binding response regulator [Enterococcus casseliflavus ATCC 12755] Length = 209 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA-ARNLTERETSC 181 GY++ TS +A + G +V T ++ R+ +LT RE Sbjct: 96 AGAAGYLLKTSTAHEIAEAIRATQRGERVLEPEVTTKMMDRLTNRTPILHEDLTNREQEV 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA+ L +++ TV ++ + KL+ +R QA A + G I Sbjct: 156 LLLIAEGKSNQEIADSLFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHGLI 208 >gi|167615994|ref|ZP_02384629.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis Bt4] Length = 194 Score = 110 bits (276), Expect = 1e-22, Method: Composition-based stats. Identities = 41/184 (22%), Positives = 63/184 (34%), Gaps = 16/184 (8%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ E Y D + P+ W + T S + L G+ Sbjct: 16 SNYPDRWQERYIEARFANVDSAVKAALGSDRPVTWSA---STNASKSAFWAEALSFGIA- 71 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEV----IIEAHGACYQVITDFLELFKKRSSA 170 G + R G + + + H Sbjct: 72 -HGWSSASRGADGTIGVLSLSRRQDAIDTAEKFRNESIVHWLANVAHASMAPFLPAADEF 130 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RET L+ DG T+ EIA L +S TVN ++ + KL + N+IQA+AKA Sbjct: 131 DPDLTRRETDVLKWTADGKTAYEIALILSISESTVNFHVKNIVSKLGSTNKIQAVAKAAL 190 Query: 231 FGYI 234 G + Sbjct: 191 MGML 194 >gi|218515977|ref|ZP_03512817.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 173 Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 51/161 (31%), Gaps = 2/161 (1%) Query: 75 DFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 + P + E + L G FPV G + Sbjct: 12 PVIRRMLRSTSPFNYDVEAINTDRGEGKKSTVIDLFRRYGMEKGAYFPVHDAAGGRGAMS 71 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + E+ A + +L T E CL+L G S E Sbjct: 72 ISGSRNFTMLEMAKILFIATL-IYDRLSQLTLNEKHKPIAFTSSELDCLRLTAGGRKSSE 130 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA+ L LS + VN ++GS KL R QA+ A+R I Sbjct: 131 IAKLLDLSENAVNNHIGSVIKKLGCTTRTQAVVSALRLNII 171 >gi|37223250|gb|AAQ90227.1| LuxR [Photobacterium leiognathi] Length = 217 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 73/200 (36%), Gaps = 9/200 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K S +++ L + + Y + + I L NY + Sbjct: 19 KACRSNNDINQCLSDMTKMVHCE---YYLLAIIYPHSMVKSDISILDNYPKKWRQYYDDA 75 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + NS PI W + V + S + ++ G +FP+ + Sbjct: 76 NLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNV-IKEAKTSGLITGFSFPIHTANNG 134 Query: 129 NGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183 G + F SE + + + A ++ ++ + K + + +LT+RE CL Sbjct: 135 FGMLSFAHSEKDNYIDSLFLHACMNIPLIVPSLVDNYXKINIANNKSNNDLTKREKECLA 194 Query: 184 LAGDGYTSEEIAEKLGLSVH 203 A +G +S + ++ LG S Sbjct: 195 WACEGKSSWDSSKILGCSER 214 >gi|34452032|gb|AAQ72483.1| DNA binding response regulator [Bacillus cereus] Length = 200 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEDLAASIRNVMRGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 152 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200 >gi|324329302|gb|ADY24562.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 200 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEDLAASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 152 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200 >gi|49480425|ref|YP_039344.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|196036499|ref|ZP_03103894.1| DNA-binding response regulator [Bacillus cereus W] gi|218906530|ref|YP_002454364.1| DNA-binding response regulator [Bacillus cereus AH820] gi|300117868|ref|ZP_07055635.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|301056821|ref|YP_003795032.1| DNA-binding response regulator [Bacillus anthracis CI] gi|49331981|gb|AAT62627.1| DNA-binding response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|195990832|gb|EDX54805.1| DNA-binding response regulator [Bacillus cereus W] gi|218538999|gb|ACK91397.1| DNA-binding response regulator [Bacillus cereus AH820] gi|298724732|gb|EFI65407.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|300378990|gb|ADK07894.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 200 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEDLAASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 152 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200 >gi|254511393|ref|ZP_05123460.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium KLH11] gi|221535104|gb|EEE38092.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium KLH11] Length = 239 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 66/190 (34%), Gaps = 15/190 (7%) Query: 59 LDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 + Y D + + W+ + ++ + Sbjct: 51 YGFTTYSDAWDARYREKNYHRIDPVILGCFQRFHAVDWKQLNWSG--KAVRAFLQDAQDH 108 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------FK 165 + G + P+R + S +A + I +G ++ FL Sbjct: 109 GVGNQGYSIPLRGPSGQFALFTVNSTCDDVAWQAFITNYGRDLILVAYFLNRKALEFAQN 168 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ R L+ RE + L GY+ ++A L +S HT+ AY+ SA KL A N AI Sbjct: 169 RQPETTRALSPREIDAMTLLALGYSRAQVAHSLSISEHTLRAYIESARSKLGAQNTTHAI 228 Query: 226 AKAIRFGYIC 235 A A+ G I Sbjct: 229 ATALSRGLIV 238 >gi|118480385|ref|YP_897536.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196045516|ref|ZP_03112747.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|118419610|gb|ABK88029.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|196023723|gb|EDX62399.1| DNA-binding response regulator [Bacillus cereus 03BB108] Length = 200 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S L+ + G ++ D + + L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEDLSASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 152 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200 >gi|293405402|ref|ZP_06649394.1| regulatory protein sdiA [Escherichia coli FVEC1412] gi|298381046|ref|ZP_06990645.1| regulatory protein sdiA [Escherichia coli FVEC1302] gi|291427610|gb|EFF00637.1| regulatory protein sdiA [Escherichia coli FVEC1412] gi|298278488|gb|EFI20002.1| regulatory protein sdiA [Escherichia coli FVEC1302] Length = 244 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 43 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 102 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 103 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLK 157 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 158 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 217 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 218 HQKNMQKKINAPNKTQVACYAAATGLI 244 >gi|157161388|ref|YP_001458706.1| DNA-binding transcriptional activator SdiA [Escherichia coli HS] gi|170019746|ref|YP_001724700.1| DNA-binding transcriptional activator SdiA [Escherichia coli ATCC 8739] gi|218689909|ref|YP_002398121.1| DNA-binding transcriptional activator SdiA [Escherichia coli ED1a] gi|218705411|ref|YP_002412930.1| DNA-binding transcriptional activator SdiA [Escherichia coli UMN026] gi|300899169|ref|ZP_07117448.1| autoinducer binding domain protein [Escherichia coli MS 198-1] gi|300928947|ref|ZP_07144451.1| autoinducer binding domain protein [Escherichia coli MS 187-1] gi|331673434|ref|ZP_08374202.1| regulatory protein SdiA [Escherichia coli TA280] gi|331683468|ref|ZP_08384069.1| regulatory protein SdiA [Escherichia coli H299] gi|157067068|gb|ABV06323.1| regulatory protein SdiA [Escherichia coli HS] gi|169754674|gb|ACA77373.1| transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|218427473|emb|CAR08247.1| DNA-binding transcriptional activator [Escherichia coli ED1a] gi|218432508|emb|CAR13401.1| DNA-binding transcriptional activator [Escherichia coli UMN026] gi|300357228|gb|EFJ73098.1| autoinducer binding domain protein [Escherichia coli MS 198-1] gi|300463101|gb|EFK26594.1| autoinducer binding domain protein [Escherichia coli MS 187-1] gi|331069632|gb|EGI41019.1| regulatory protein SdiA [Escherichia coli TA280] gi|331079683|gb|EGI50880.1| regulatory protein SdiA [Escherichia coli H299] Length = 240 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|225867334|ref|YP_002752712.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|225790979|gb|ACO31196.1| DNA-binding response regulator [Bacillus cereus 03BB102] Length = 200 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S L+ + G ++ D + + L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEDLSASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 152 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200 >gi|261855565|ref|YP_003262848.1| LuxR family transcriptional regulator [Halothiobacillus neapolitanus c2] gi|261836034|gb|ACX95801.1| transcriptional regulator, LuxR family [Halothiobacillus neapolitanus c2] Length = 237 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 43/226 (19%), Positives = 80/226 (35%), Gaps = 29/226 (12%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDL-DSGDIPNILIETYGD-------DFL 77 +I+ AL N+A +L + N + + Y D + Sbjct: 23 KKIEDEALALGFENAAYGL----RLNLNITNQKVVMMNNYSQNWKRRYTDENYISIDPVV 78 Query: 78 FHFNSGLLPIIWQS--IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 H N L+P++W S I E S L+ G + + G + T Sbjct: 79 KHGNKSLMPVVWSSNKITENKNFWEDA-YSHNLKYGWSQASA------DQVGRRGLLTLT 131 Query: 136 SEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 ++ + E + +++ + KK LT RE L+ G Sbjct: 132 RGHEPISELELKELQYRLTWLTQISHHCMSEII-TTKKMPETMITLTMREKDVLRWTAAG 190 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS E + + ++ TVN ++ ++ KL+ +N+ A +A G + Sbjct: 191 KTSGETSTIMNITERTVNFHIANSMQKLNCINKTSATVRAAMLGLL 236 >gi|293553248|ref|ZP_06673885.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1039] gi|291602658|gb|EFF32873.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1039] Length = 210 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERETS 180 GY++ TS +A+ + G +V T +E +R+ LT RE Sbjct: 96 AGAAGYLLKTSTAHEIADAIRATQCGERVLEPEVTTKMMEKMSRRNDPVLHEELTNRENE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KL+ +R QA A + G + Sbjct: 156 ILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209 >gi|302518123|ref|ZP_07270465.1| two-component system response regulator [Streptomyces sp. SPB78] gi|318059111|ref|ZP_07977834.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079115|ref|ZP_07986447.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|333028198|ref|ZP_08456262.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|302427018|gb|EFK98833.1| two-component system response regulator [Streptomyces sp. SPB78] gi|332748050|gb|EGJ78491.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 223 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF--------KKRSSAAR 172 L +G+++ + L + + A G V L+ + ++ S + Sbjct: 97 LRAGASGFLLKDAPAHELVQAIRVVASGEAMLAPSVTRRLLDKYAGHLPSGEEQPPSTLQ 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVFAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|228955601|ref|ZP_04117601.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229193605|ref|ZP_04320549.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228589910|gb|EEK47785.1| Two-component response regulator [Bacillus cereus ATCC 10876] gi|228804077|gb|EEM50696.1| Two-component response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 189 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G +V D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REVSQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGWI 189 >gi|256380987|ref|YP_003104647.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255925290|gb|ACU40801.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 218 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFK---KRSSAARN 173 L +G+++ + L + + A G +++ FL + +S Sbjct: 93 LRSGASGFLLKDTPPADLVSALRAVASGDAVVSPSVTKRLLGRFLGEGGGTLRDASVLDA 152 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L G ++ EIA KL LS TV ++G KL+ +R+QA+ A G Sbjct: 153 LTEREREVLVLIAKGMSNTEIARKLFLSEATVKTHVGRILAKLELRDRVQAVVLAYETGL 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|256826588|ref|YP_003150547.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256582731|gb|ACU93865.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 261 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA---RN 173 L +G+++ +E + V A G ++I F+ + S+AA + Sbjct: 137 LQAGASGFMLKDAEPDDIVRAVRTVAAGDALIQPSITRRLIETFVSSRPRTSAAAGGLVD 196 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ G ++EEIA+ L +S TV +L KLDA +R Q + A G Sbjct: 197 LTDREREILRFVARGMSNEEIADDLVISPATVKTHLARIMGKLDAHDRAQLVVAAYESGL 256 Query: 234 I 234 + Sbjct: 257 V 257 >gi|218231458|ref|YP_002370129.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218159415|gb|ACK59407.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 200 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G +V D + + L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REVSQDLMFGLWQEQ---NPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 152 KEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGWI 200 >gi|149181561|ref|ZP_01860055.1| hypothetical protein BSG1_13616 [Bacillus sp. SG-1] gi|148850675|gb|EDL64831.1| hypothetical protein BSG1_13616 [Bacillus sp. SG-1] Length = 199 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 NGY++ S LA+ + G EL + LT RE L+L Sbjct: 94 AGVNGYLLKDSPSEDLADSIRTVMSGKRVYA----PELIEDAYGEGNPLTVREIEVLELV 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA++L + TV Y+ + KL NRI+AI ++ G+ Sbjct: 150 ADGKNTKEIADELSIKTGTVRNYISTILDKLQVKNRIEAITQSKEKGW 197 >gi|307708226|ref|ZP_07644693.1| response regulator [Streptococcus mitis NCTC 12261] gi|307615672|gb|EFN94878.1| response regulator [Streptococcus mitis NCTC 12261] Length = 210 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGARGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|327200684|pdb|3QP5|A Chain A, Crystal Structure Of Cvir Bound To Antagonist Chlorolactone (Cl) gi|327200685|pdb|3QP5|B Chain B, Crystal Structure Of Cvir Bound To Antagonist Chlorolactone (Cl) gi|327200686|pdb|3QP5|C Chain C, Crystal Structure Of Cvir Bound To Antagonist Chlorolactone (Cl) gi|327200687|pdb|3QP5|D Chain D, Crystal Structure Of Cvir Bound To Antagonist Chlorolactone (Cl) gi|288973234|gb|ADC79709.1| CviR transcriptional regulator [Chromobacterium violaceum] Length = 265 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 60/181 (33%), Gaps = 12/181 (6%) Query: 61 SGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + P+ ++ Y D L + G P++W+ + + Sbjct: 77 NVSYPSDWLDQYMKENYAQHDPILR-IHLGQGPVMWEERFNRAKGAEEKRF-IAEATQNG 134 Query: 114 PFAGIAFPVRLGFHKNG-YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 +GI F + G + ++ + + + + ++ Sbjct: 135 MGSGITFSAASERNNIGSILSIAGREPGRNAALVAMLNCLTPHLHQAAIRVANLPPASPS 194 Query: 173 --NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE G T+ EIA L +S TV ++ + KL+A NR AI + Sbjct: 195 NMPLSQREYDIFHWMSRGKTNWEIATILDISERTVKFHVANVIRKLNANNRTHAIVLGMH 254 Query: 231 F 231 Sbjct: 255 L 255 >gi|322374884|ref|ZP_08049398.1| DNA-binding response regulator VraR [Streptococcus sp. C300] gi|321280384|gb|EFX57423.1| DNA-binding response regulator VraR [Streptococcus sp. C300] Length = 210 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGAKGYMLKTSSADELLHAVRKVASGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|313902397|ref|ZP_07835800.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313467328|gb|EFR62839.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 218 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 11/121 (9%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSA-----ARN 173 +G+V+ E L V + G Y + + ++R + Sbjct: 96 AAGASGFVLKDVEPRTLVEAVRLCCRGEGYVHPTLSARVLNLGTRRRERWTPLGGGIPEP 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL +G ++ EI ++L +S TV ++ S KL +R QA+ AIR G+ Sbjct: 156 LTRREFEVLQLVAEGVSNREIGQRLFISEKTVKNHITSIFRKLGVADRTQAVIHAIREGW 215 Query: 234 I 234 + Sbjct: 216 V 216 >gi|294498256|ref|YP_003561956.1| two-component response regulator DesR [Bacillus megaterium QM B1551] gi|295703606|ref|YP_003596681.1| two-component response regulator DesR [Bacillus megaterium DSM 319] gi|294348193|gb|ADE68522.1| two-component response regulator DesR [Bacillus megaterium QM B1551] gi|294801265|gb|ADF38331.1| two-component response regulator DesR [Bacillus megaterium DSM 319] Length = 200 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 3/110 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ S LAN + G +L+ + +S LT RE L Sbjct: 92 LKAGVSGYLLKDSPSEELANSIRSVMAGRRLYAPELVDDLYSESTS---PLTAREKEVLA 148 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L DG ++EIA++L + TV Y+ + KL+ NRI+AI + G+ Sbjct: 149 LVADGKNTKEIADELSIKTGTVRNYISTILDKLEVKNRIEAITRFKEKGW 198 >gi|226355486|ref|YP_002785226.1| response regulator NarL [Deinococcus deserti VCD115] Length = 218 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN---LTER 177 L GY++ + L V A G V LE F ++ L+ R Sbjct: 97 LEAGAAGYLLKNASEDDLLGAVRAVAAGESALHPSVARKVLERFSTHTTPTPPEDDLSPR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L++A G T++EIA L +S TV +L + KL +R +A+ I+ G+I Sbjct: 157 ELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRGWI 213 >gi|29377375|ref|NP_816529.1| LuxR family DNA-binding response regulator [Enterococcus faecalis V583] gi|227554359|ref|ZP_03984406.1| LuxR family response regulator [Enterococcus faecalis HH22] gi|255970859|ref|ZP_05421445.1| regulatory protein [Enterococcus faecalis T1] gi|255974434|ref|ZP_05425020.1| regulatory protein [Enterococcus faecalis T2] gi|256618304|ref|ZP_05475150.1| regulatory protein [Enterococcus faecalis ATCC 4200] gi|256761234|ref|ZP_05501814.1| regulatory protein [Enterococcus faecalis T3] gi|256958147|ref|ZP_05562318.1| regulatory protein [Enterococcus faecalis DS5] gi|256960293|ref|ZP_05564464.1| regulatory protein [Enterococcus faecalis Merz96] gi|256962729|ref|ZP_05566900.1| regulatory protein [Enterococcus faecalis HIP11704] gi|257077420|ref|ZP_05571781.1| regulatory protein [Enterococcus faecalis JH1] gi|257080715|ref|ZP_05575076.1| LuxR family DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|257083389|ref|ZP_05577750.1| LuxR family DNA-binding response regulator [Enterococcus faecalis Fly1] gi|257088053|ref|ZP_05582414.1| regulatory protein [Enterococcus faecalis D6] gi|257091132|ref|ZP_05585493.1| LuxR family DNA-binding response regulator [Enterococcus faecalis CH188] gi|257417079|ref|ZP_05594073.1| regulatory protein [Enterococcus faecalis AR01/DG] gi|257417793|ref|ZP_05594787.1| luxR family DNA-binding response regulator [Enterococcus faecalis T11] gi|257420589|ref|ZP_05597579.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|294779660|ref|ZP_06745051.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300861047|ref|ZP_07107134.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|29344842|gb|AAO82599.1| DNA-binding response regulator, LuxR family [Enterococcus faecalis V583] gi|227176505|gb|EEI57477.1| LuxR family response regulator [Enterococcus faecalis HH22] gi|255961877|gb|EET94353.1| regulatory protein [Enterococcus faecalis T1] gi|255967306|gb|EET97928.1| regulatory protein [Enterococcus faecalis T2] gi|256597831|gb|EEU17007.1| regulatory protein [Enterococcus faecalis ATCC 4200] gi|256682485|gb|EEU22180.1| regulatory protein [Enterococcus faecalis T3] gi|256948643|gb|EEU65275.1| regulatory protein [Enterococcus faecalis DS5] gi|256950789|gb|EEU67421.1| regulatory protein [Enterococcus faecalis Merz96] gi|256953225|gb|EEU69857.1| regulatory protein [Enterococcus faecalis HIP11704] gi|256985450|gb|EEU72752.1| regulatory protein [Enterococcus faecalis JH1] gi|256988745|gb|EEU76047.1| LuxR family DNA-binding response regulator [Enterococcus faecalis E1Sol] gi|256991419|gb|EEU78721.1| LuxR family DNA-binding response regulator [Enterococcus faecalis Fly1] gi|256996083|gb|EEU83385.1| regulatory protein [Enterococcus faecalis D6] gi|256999944|gb|EEU86464.1| LuxR family DNA-binding response regulator [Enterococcus faecalis CH188] gi|257158907|gb|EEU88867.1| regulatory protein [Enterococcus faecalis ARO1/DG] gi|257159621|gb|EEU89581.1| luxR family DNA-binding response regulator [Enterococcus faecalis T11] gi|257162413|gb|EEU92373.1| DNA-binding response regulator [Enterococcus faecalis X98] gi|294453317|gb|EFG21728.1| response regulator receiver domain protein [Enterococcus faecalis PC1.1] gi|300850086|gb|EFK77836.1| response regulator receiver domain protein [Enterococcus faecalis TUSoD Ef11] gi|323478876|gb|ADX78315.1| response regulator [Enterococcus faecalis 62] gi|327536064|gb|AEA94898.1| DNA-binding response regulator [Enterococcus faecalis OG1RF] Length = 210 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 5/113 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERETS 180 GY++ TS +A+ + G +V +E K+ +LT RE Sbjct: 96 AGAAGYLLKTSTAHEIADAIRATYRGERVLEPEVTHKMMERLTKKQEPVLHEDLTNREHE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G +++EIA++L +++ TV ++ + KLD +R QA A + G Sbjct: 156 ILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGL 208 >gi|269839470|ref|YP_003324162.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269791200|gb|ACZ43340.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 188 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 H G++ + + V A G V +R LT+RE L Sbjct: 77 GSGHPVGFLPRDASVEEVIAAVRAVASGLSV-VAPTLAARIVRREPEEVPLTQREVEVLA 135 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L DG ++ IA +LG+S HTV ++GS KL A +R +A+A A R G + Sbjct: 136 LMADGLPNKAIAARLGISEHTVKFHVGSILAKLGASSRAEAVAIAARKGLL 186 >gi|152061176|dbj|BAF73632.1| putative transcription factor PsyR [Pseudomonas syringae pv. tabaci] Length = 232 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 17/182 (9%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ +++Y D + H + P W+ + + ++ Sbjct: 52 SNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAVQGVETDDF-LKRSAKYQL 110 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLM--LANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 +G F + + + + +A +I L K R+ Sbjct: 111 SSGATFTLHDASGLFAALSLCNARQQNDFDQRIREKAADIQMSLIRFHDRLIKTRAPHEL 170 Query: 173 -------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RET L+ G + EIAE +S TV ++ + + KL+ QA+ Sbjct: 171 FPQPTQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAV 230 Query: 226 AK 227 K Sbjct: 231 YK 232 >gi|257057262|ref|YP_003135094.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587134|gb|ACU98267.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 223 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETS 180 L +GY++ ++ + + A + V + LTERE Sbjct: 106 LANGASGYLLKSAGPDEVVAAIQAAARDEMFLDPAVARRLTRQMVSPPTGVGALTERERD 165 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +GY+++EIA++L +S TV ++ S KL +R QA A+R G + Sbjct: 166 VLILIANGYSNKEIADELVISERTVRTHVSSILRKLRLSSRTQAALVAVREGLV 219 >gi|326334186|ref|ZP_08200409.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae bacterium Broad-1] gi|325947977|gb|EGD40094.1| nitrate/nitrite response regulator protein NarL [Nocardioidaceae bacterium Broad-1] Length = 212 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 56/118 (47%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------LTE 176 GY++ S +A + + A G + +E FK+ + R+ LT+ Sbjct: 92 AGAMGYLLKDSSIDQVAQAIRVVADGQSLISPSMAAKLMEEFKQMARPDRSPVPGPKLTD 151 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L G + EIA++L +S +TV ++ + KL A +R++A+ A+R + Sbjct: 152 RELEVLGLVAKGLNNREIAKRLFISENTVKNHVRNILEKLQAHSRMEAVMYAVRQKLL 209 >gi|171320496|ref|ZP_02909525.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] gi|171094259|gb|EDT39337.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MEX-5] Length = 234 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 69/209 (33%), Gaps = 9/209 (4%) Query: 30 ARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIW 89 A T FP + I + N + + D P++W Sbjct: 31 ALGLEYATYAMRRPFPICNRQIVMVSNCPVRWRERYIDAQFINIDPVFKAAIGSDEPVVW 90 Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLMLANEVII 147 +S G + R G + + S+ + A +++ Sbjct: 91 S-----AQHGASRSRFWDEALSFGIAHGWSSVSRGADGTLGILTLSRSSDPIEPAEKILN 145 Query: 148 E--AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 + H + LT+RET L+ DG T+ EI+ L +S TV Sbjct: 146 QSTVHWLAHAAHLAMAPFLPAGDEFDPTLTQRETDVLKWTADGKTAYEISLILSISESTV 205 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 N ++ + KL N++ A+AKA G + Sbjct: 206 NFHVKNIVAKLGTANKVHAVAKAALMGML 234 >gi|294499258|ref|YP_003562958.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349195|gb|ADE69524.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 212 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L +GY + S+ L + +G ++T + +K+ + +LT+ Sbjct: 95 LEAGASGYQLKESDPDELVAAIRKLMNGENQLHPKVTTHLLTRLTKSSEKKVNFIDHLTK 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+ G +++EI L ++ TV ++ + KL +R QA A++ G Sbjct: 155 REKDVLKEIAKGKSNKEIGVALHITEKTVKTHVSNILSKLGVQDRTQAALYAVQHGI 211 >gi|296505776|ref|YP_003667476.1| two-component response regulator YocG [Bacillus thuringiensis BMB171] gi|296326828|gb|ADH09756.1| two-component response regulator YocG [Bacillus thuringiensis BMB171] Length = 200 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G +V D + + L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REVSQDLMFGLWQEQ---NPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 152 KEGKTANEIAKALYLSPGTVRNYISEVLAKLDAKNRIEAITIAEEKGWI 200 >gi|300787377|ref|YP_003767668.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796891|gb|ADJ47266.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 215 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 41/124 (33%), Positives = 55/124 (44%), Gaps = 1/124 (0%) Query: 112 LLPFAGIAFPVR-LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 L +AG A VR LG GYV+ L V A G L + S Sbjct: 89 LTSYAGRADAVRALGAGARGYVLKAGPPEELFRAVRSAAAGGLGLAPEIVDGLVGQVVSP 148 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE ++L G ++ IAE L LS TV +L KL A NR A+++A+R Sbjct: 149 DPDLTTREIEVIRLLASGRSNRAIAEALFLSEATVKTHLVRIYRKLGADNRAAAVSEAVR 208 Query: 231 FGYI 234 G + Sbjct: 209 RGLL 212 >gi|326326038|ref|YP_004250847.1| putative transcriptional activator protein solR-LuxR [Vibrio nigripulchritudo] gi|323669089|emb|CBJ93133.1| Putative transcriptional activator protein solR-LuxR [Vibrio nigripulchritudo] Length = 232 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 89/235 (37%), Gaps = 23/235 (9%) Query: 11 SSSLQELSPRLHLIQNRIKARNFAL-YTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++++ ++ +LH + N ++ NFA +N+ P ++ Y DI Sbjct: 11 ANTVSDVKCQLHKLANLLEFDNFAFGIKVNNLTGIPTIDM----INTYSDQWNDIYKKNN 66 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEET--VIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D + ++ PIIW+ + T + E + ++ + G + P Sbjct: 67 FISKDPIVLEGSATSNPIIWEESLKPTHEIFEIANDFNLNI--------GWSKPSHKPNG 118 Query: 128 KNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 + F+ L + + Q + S LT RE Sbjct: 119 VSSLFSFSRSSESLTEAELWKQTPYLLWVANIAEQAFERVNSGYH-GYSLVEVLTPREIE 177 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+ + +G T+ E + L +S TV ++ +A KL+ N+ A+ KA+ G +C Sbjct: 178 ILKWSAEGKTASETSMILSISERTVTFHITNAVKKLNTCNKTSAVIKAVTLGLVC 232 >gi|197103145|ref|YP_002128523.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum HLK1] gi|196480421|gb|ACG79948.1| transcriptional regulator, LuxR family [Phenylobacterium zucineum HLK1] Length = 252 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 61/190 (32%), Gaps = 6/190 (3%) Query: 45 PRRQQLI-CELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQ 103 P R++ + D + P+ W + + Sbjct: 52 PLRERHVEVTFGRTHAAWQAHYEAQGHAARDPIVREMLRSTEPLFWSDLPARRGALKPDE 111 Query: 104 LSVRLEGGLLPFA-GIAFPVRLGFHKNGYVIFTSEFLM-LANEVIIEAHGAC---YQVIT 158 V E G+ P+ V+ E L A + H + Sbjct: 112 ARVMEEARSFGLNEGLMTPLHHVDGSVSAVLMMGERLASDAPDTRAALHLLSIYYGSLAR 171 Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L+ R+ CL+ A +G +S I + L LS TV+ +L SA KL Sbjct: 172 KLRQRNDGGEPQKAKLSARQIECLRWAREGKSSYVIGQILSLSARTVDEHLASACRKLGV 231 Query: 219 VNRIQAIAKA 228 R+QA+A+A Sbjct: 232 HTRMQAVAQA 241 >gi|149184172|ref|ZP_01862490.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148831492|gb|EDL49925.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 217 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 71/222 (31%), Gaps = 20/222 (9%) Query: 23 LIQNRIKARNFALYT-INSALDFPRRQQLICELHNYDLDSGDIPNILIETY-------GD 74 +++ F + + + P R ++D+ P+ ETY D Sbjct: 4 ILRRYFAEFGFEAFAYMVPSKTEPGR---------IEMDAFGFPDAWAETYRSAEMDTID 54 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 F + P+ I + + + G+ P G Sbjct: 55 PFPRYVARSGRPLRLTEISAQAQSKEQKAF-LEQAREHGITDGLIIPTFGIRQNLGVFAI 113 Query: 135 TS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + +L + T L + NL+ RET L G T+ Sbjct: 114 GQVKDLKVLERASVFALQAVAQAAHTQMEMLASRADGLRTNLSNRETEILHWIALGKTNS 173 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA LG+ TV Y+ KLD +R A KAIR+G I Sbjct: 174 EIATILGIGGPTVATYIKRVFDKLDVKDRSSAAVKAIRWGII 215 >gi|322391513|ref|ZP_08064982.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321145596|gb|EFX40988.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 210 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ T+ L + V A G A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGARGYMLKTASADELLHAVRKVAAGEFAIEQEVSKKVEYNRNHVELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLQVSDRTQAAVYAFQHHLV 205 >gi|229547584|ref|ZP_04436309.1| LuxR family response regulator [Enterococcus faecalis TX1322] gi|256852497|ref|ZP_05557873.1| LuxR family DNA-binding response regulator [Enterococcus faecalis T8] gi|229307274|gb|EEN73261.1| LuxR family response regulator [Enterococcus faecalis TX1322] gi|256712351|gb|EEU27383.1| LuxR family DNA-binding response regulator [Enterococcus faecalis T8] Length = 210 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 5/112 (4%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERETSC 181 GY++ TS +A+ + G +V +E K+ +LT RE Sbjct: 97 GAAGYLLKTSTAHEIADAIRATYRGERVLEPEVTHKMMERLTKKQEPVLHEDLTNREHEI 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G +++EIA++L +++ TV ++ + KLD +R QA A + G Sbjct: 157 LMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGL 208 >gi|228903831|ref|ZP_04067946.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] gi|228855740|gb|EEN00285.1| Two-component response regulator [Bacillus thuringiensis IBL 4222] Length = 189 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G EL L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMKGKR----EVSQELMFGLWQEQNPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|228968483|ref|ZP_04129471.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228791189|gb|EEM38803.1| Two-component response regulator [Bacillus thuringiensis serovar sotto str. T04001] Length = 189 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G EL L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMKGKR----EVSQELMFGLWQEQNPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|229158912|ref|ZP_04286969.1| Two-component response regulator [Bacillus cereus ATCC 4342] gi|228624523|gb|EEK81293.1| Two-component response regulator [Bacillus cereus ATCC 4342] Length = 189 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAASIRNVMRGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA L LS TV Y+ KLDA NRI+AI A G++ Sbjct: 141 KEGKTANEIARALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWV 189 >gi|167640433|ref|ZP_02398697.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|254735503|ref|ZP_05193211.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|167511653|gb|EDR87035.1| DNA-binding response regulator [Bacillus anthracis str. A0193] Length = 200 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 96 AGVHGYLLKDSPSKDLAASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 152 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200 >gi|163846245|ref|YP_001634289.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524000|ref|YP_002568470.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163667534|gb|ABY33900.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222447879|gb|ACM52145.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 217 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK-----KRSSAA 171 L GY++ ++ + + I A G +V+ +F L + S A Sbjct: 94 LKAGARGYMLKDADSSDIVASIRIVARGEALIQPSITRKVLAEFSRLAASAPATRPSPLA 153 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L G+++ EIA++L +S TV Y+ S KL +R QAI +A Sbjct: 154 EPLTEREMDVLHGIAAGHSNREIADQLCISEGTVKNYVSSLLAKLAVRDRTQAIIRAREL 213 Query: 232 GYI 234 G + Sbjct: 214 GLL 216 >gi|152977535|ref|YP_001377052.1| two component LuxR family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|114152690|gb|ABI52594.1| two-component response regulator [Bacillus cytotoxicus] gi|152026287|gb|ABS24057.1| two component transcriptional regulator, LuxR family [Bacillus cytotoxicus NVH 391-98] Length = 200 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ + + + L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEELAEAIRNVMKGK-REISPELMFGLWQEQ---NPLSDREREVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ +IA+ L LS TV Y+ KL+A NRI+AI A G+I Sbjct: 152 KEGKTTNDIAKALYLSPGTVRNYISEVLTKLNAKNRIEAITIAEEKGWI 200 >gi|166711196|ref|ZP_02242403.1| transcriptional regulator AhyR/AsaR family protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 254 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 69/190 (36%), Gaps = 19/190 (10%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLL 113 GD+ ++ E D P +W + + + R Sbjct: 65 GDMQHVWCEHGYYQHDPVQQRAARRTTPFVWSYRTDGDCAGVEYVGGQHRQVTRYLCDSG 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---------GACYQVITDFLELF 164 G+ P+ L + F+ +A E + A +Q L Sbjct: 125 MGTGVTVPLHLPGG--AFATFSGAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDP 182 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A Sbjct: 183 QERRCHYIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEA 242 Query: 225 IAKAIRFGYI 234 + + + + + Sbjct: 243 VVRGMHYRLL 252 >gi|108804387|ref|YP_644324.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108765630|gb|ABG04512.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 220 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L GY++ + LA + G +VI++ L K + Sbjct: 97 LRAGARGYILKDTPSEELAAAIEKVHRGEAVLDGPITLKVISELGRLSKGPAGPQPGSGG 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L G ++ EIA L ++ TV ++ S KL +R QA A+ G+ Sbjct: 157 LSEREMEVLRLVASGASNREIARALYITEGTVKNHISSILRKLGFRDRTQAALYALERGW 216 Query: 234 I 234 I Sbjct: 217 I 217 >gi|320641764|gb|EFX11152.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H7 str. G5101] Length = 240 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + + Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFNEAQSLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|227518222|ref|ZP_03948271.1| LuxR family response regulator [Enterococcus faecalis TX0104] gi|229548209|ref|ZP_04436934.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200] gi|293382160|ref|ZP_06628103.1| DNA-binding response regulator VraR [Enterococcus faecalis R712] gi|293388529|ref|ZP_06633033.1| DNA-binding response regulator VraR [Enterococcus faecalis S613] gi|307268836|ref|ZP_07550203.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|307272676|ref|ZP_07553924.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|307275104|ref|ZP_07556258.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|307278542|ref|ZP_07559614.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|307287394|ref|ZP_07567453.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|307290831|ref|ZP_07570725.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|312900387|ref|ZP_07759697.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|312902923|ref|ZP_07762120.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|312905744|ref|ZP_07764766.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|312909060|ref|ZP_07767920.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|312952200|ref|ZP_07771078.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|227074318|gb|EEI12281.1| LuxR family response regulator [Enterococcus faecalis TX0104] gi|229306688|gb|EEN72684.1| LuxR family response regulator [Enterococcus faecalis ATCC 29200] gi|291080443|gb|EFE17807.1| DNA-binding response regulator VraR [Enterococcus faecalis R712] gi|291082133|gb|EFE19096.1| DNA-binding response regulator VraR [Enterococcus faecalis S613] gi|306498140|gb|EFM67663.1| response regulator receiver domain protein [Enterococcus faecalis TX0411] gi|306501567|gb|EFM70863.1| response regulator receiver domain protein [Enterococcus faecalis TX0109] gi|306504779|gb|EFM73977.1| response regulator receiver domain protein [Enterococcus faecalis TX0860] gi|306508222|gb|EFM77338.1| response regulator receiver domain protein [Enterococcus faecalis TX2134] gi|306510671|gb|EFM79693.1| response regulator receiver domain protein [Enterococcus faecalis TX0855] gi|306514840|gb|EFM83388.1| response regulator receiver domain protein [Enterococcus faecalis TX4248] gi|310628223|gb|EFQ11506.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 512] gi|310629856|gb|EFQ13139.1| response regulator receiver domain protein [Enterococcus faecalis TX0102] gi|310633695|gb|EFQ16978.1| response regulator receiver domain protein [Enterococcus faecalis TX0635] gi|311290622|gb|EFQ69178.1| response regulator receiver domain protein [Enterococcus faecalis DAPTO 516] gi|311292477|gb|EFQ71033.1| response regulator receiver domain protein [Enterococcus faecalis TX0470] gi|315028155|gb|EFT40087.1| response regulator receiver domain protein [Enterococcus faecalis TX2137] gi|315032281|gb|EFT44213.1| response regulator receiver domain protein [Enterococcus faecalis TX0017] gi|315036239|gb|EFT48171.1| response regulator receiver domain protein [Enterococcus faecalis TX0027] gi|315145424|gb|EFT89440.1| response regulator receiver domain protein [Enterococcus faecalis TX2141] gi|315148783|gb|EFT92799.1| response regulator receiver domain protein [Enterococcus faecalis TX4244] gi|315151677|gb|EFT95693.1| response regulator receiver domain protein [Enterococcus faecalis TX0012] gi|315154523|gb|EFT98539.1| response regulator receiver domain protein [Enterococcus faecalis TX0031] gi|315156392|gb|EFU00409.1| response regulator receiver domain protein [Enterococcus faecalis TX0043] gi|315160117|gb|EFU04134.1| response regulator receiver domain protein [Enterococcus faecalis TX0312] gi|315163264|gb|EFU07281.1| response regulator receiver domain protein [Enterococcus faecalis TX0645] gi|315165932|gb|EFU09949.1| response regulator receiver domain protein [Enterococcus faecalis TX1302] gi|315169340|gb|EFU13357.1| response regulator receiver domain protein [Enterococcus faecalis TX1341] gi|315171806|gb|EFU15823.1| response regulator receiver domain protein [Enterococcus faecalis TX1342] gi|315174757|gb|EFU18774.1| response regulator receiver domain protein [Enterococcus faecalis TX1346] gi|315576264|gb|EFU88455.1| response regulator receiver domain protein [Enterococcus faecalis TX0309B] gi|315578904|gb|EFU91095.1| response regulator receiver domain protein [Enterococcus faecalis TX0630] gi|315582755|gb|EFU94946.1| response regulator receiver domain protein [Enterococcus faecalis TX0309A] gi|329573313|gb|EGG54926.1| response regulator protein VraR [Enterococcus faecalis TX1467] Length = 206 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 52/113 (46%), Gaps = 5/113 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERETS 180 GY++ TS +A+ + G +V +E K+ +LT RE Sbjct: 92 AGAAGYLLKTSTAHEIADAIRATYRGERVLEPEVTHKMMERLTKKQEPVLHEDLTNREHE 151 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G +++EIA++L +++ TV ++ + KLD +R QA A + G Sbjct: 152 ILMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGL 204 >gi|323961965|gb|EGB57564.1| autoinducer binding domain-containing protein [Escherichia coli H489] Length = 240 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 67/181 (37%), Gaps = 7/181 (3%) Query: 61 SGDIPNILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 + P + Y + L P + + S Q G+ Sbjct: 60 YTNYPEAWVSYYQAKNFLAIDPVLNPEYFNQGHLMWNDDLFSEAQPLWEAARAHGLRRGV 119 Query: 119 AFPVRLGFHKNGYVIFTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-N 173 + L G++ F+ E +L++E+ ++ + + + L + N Sbjct: 120 TQYLMLPNRALGFLSFSRCSTREIPILSDELQLKMQLLVRESLMALMRLNDEIVMTPEMN 179 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 180 FSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGL 239 Query: 234 I 234 I Sbjct: 240 I 240 >gi|238917970|ref|YP_002931487.1| two-component system, NarL family, response regulator DegU [Eubacterium eligens ATCC 27750] gi|238873330|gb|ACR73040.1| two-component system, NarL family, response regulator DegU [Eubacterium eligens ATCC 27750] Length = 214 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 6/115 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTERETS 180 +GY++ S F L + G Y ++ L LT RE Sbjct: 98 GCDGYILKDSNFDTLKKAIFSVYAGETYIEPSLMPLLNASLAERDVLKDKVSELTRRELE 157 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L++ G ++EIA L +S TV ++ + K+ +R QA AI+ I Sbjct: 158 VLKMIASGAFNKEIASTLNISERTVKNHVSNIFKKIGVSDRTQAAVFAIKNNIIS 212 >gi|315271266|gb|ACO45472.2| putative response regulator, NarL [Deinococcus deserti VCD115] Length = 231 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN---LTER 177 L GY++ + L V A G V LE F ++ L+ R Sbjct: 110 LEAGAAGYLLKNASEDDLLGAVRAVAAGESALHPSVARKVLERFSTHTTPTPPEDDLSPR 169 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L++A G T++EIA L +S TV +L + KL +R +A+ I+ G+I Sbjct: 170 ELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRGWI 226 >gi|119717167|ref|YP_924132.1| two component LuxR family transcriptional regulator [Nocardioides sp. JS614] gi|119537828|gb|ABL82445.1| two component transcriptional regulator, LuxR family [Nocardioides sp. JS614] Length = 215 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 2/115 (1%) Query: 122 VRLGF--HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 VR F GY+ T+ L V A G T L KRSS A LT+RE Sbjct: 94 VRGAFDVGAAGYLSKTAPGRELVEAVRAVAGGNSVLQPTLMAALLAKRSSPANTLTDRER 153 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L+L +G +++IA +LG+S TV + KL +R +A+ +AI + Sbjct: 154 AVLRLLAEGMHNKQIASRLGISARTVERHCDRIYGKLGVTSRTEAVVRAISANLL 208 >gi|15616190|ref|NP_244495.1| two-component response regulator involved in degradative enzyme [Bacillus halodurans C-125] gi|10176252|dbj|BAB07347.1| two-component response regulator involved in degradative enzyme [Bacillus halodurans C-125] Length = 236 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 21/132 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L +GY++ + L V + A G Y +I ++ L + + Sbjct: 102 LKTGASGYLLKEMDADALIEAVKVVAQGGAYIHPKVTHNLIKEYRRLVNEDEQESSEIGF 161 Query: 174 -----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LT RE LQL DGY++ I E L +S TV ++ + K++ +R Sbjct: 162 KEVEYRKPLHILTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNVNDRT 221 Query: 223 QAIAKAIRFGYI 234 QA+ ++I+ G++ Sbjct: 222 QAVVESIKNGWV 233 >gi|1706361|sp|P54662|DEGU_BREBE RecName: Full=Transcriptional regulatory protein degU gi|710496|gb|AAC41439.1| transcriptional activator protein [Brevibacillus brevis] Length = 236 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 21/132 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L +GY++ + L V + A G Y +I ++ L + + Sbjct: 102 LKTGASGYLLKEMDADALIEAVKVVAQGGAYIHPKVTHNLIKEYRRLVNEDEQESSEIGF 161 Query: 174 -----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LT RE LQL DGY++ I E L +S TV ++ + K++ +R Sbjct: 162 KEVEYRKPLHILTRRECEVLQLMTDGYSNRMIGEALYISEKTVKNHVSNILQKMNVNDRT 221 Query: 223 QAIAKAIRFGYI 234 QA+ ++I+ G++ Sbjct: 222 QAVVESIKNGWV 233 >gi|306828929|ref|ZP_07462121.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|304429107|gb|EFM32195.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 210 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + LT R Sbjct: 90 MPV-LNAGAKGYMLKTSSADELLHAVRKVASGELAIEQEVSKKVEYHRNHIELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|309799719|ref|ZP_07693936.1| DNA-binding response regulator [Streptococcus infantis SK1302] gi|308116675|gb|EFO54134.1| DNA-binding response regulator [Streptococcus infantis SK1302] Length = 210 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGARGYMLKTSSADELLHAVRKVAVGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLQVSDRTQAAVYAFQHHLV 205 >gi|94984662|ref|YP_604026.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554943|gb|ABF44857.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 228 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN---LTER 177 L GY++ + L V A G V LE F + L+ R Sbjct: 107 LEAGAAGYLLKNASEDELLGAVRAVAAGESALHPAVARKVLERFSTHQTPTPPEDALSPR 166 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L++A G T++EIA L +S TV +L + KL +R +A+ I+ G+I Sbjct: 167 ELEVLRVAATGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLYGIKRGWI 223 >gi|315030865|gb|EFT42797.1| response regulator receiver domain protein [Enterococcus faecalis TX4000] Length = 206 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 5/112 (4%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERETSC 181 GY++ TS +A+ + G +V +E K+ +LT RE Sbjct: 93 GAAGYLLKTSTAHEIADAIRATYRGERVLEPEVTHKMMERLTKKQEPVLHEDLTNREHEI 152 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G +++EIA++L +++ TV ++ + KLD +R QA A + G Sbjct: 153 LMLIAQGKSNQEIADELFITLKTVKTHVSNILAKLDVDDRTQAAIYAFQHGL 204 >gi|311031947|ref|ZP_07710037.1| two-component response regulator DegU [Bacillus sp. m3-13] Length = 239 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 30/141 (21%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFK----------- 165 L GY++ + L + V + A G Y ++ ++ L + Sbjct: 96 LQTGARGYLLKEMDADALVDAVKVVADGGSYLHPKVTHNLVREYRRLTENGVRSGVRGGN 155 Query: 166 ------------KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + LT RE LQL DG +++ I E L +S TV ++ + Sbjct: 156 GGGSTATTYQQIEIRRPLHLLTRRECEVLQLLADGKSNKAIGEALFISEKTVKNHVSNIL 215 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 K++ +R QA+ AI+ G++ Sbjct: 216 QKMNVNDRTQAVVVAIKNGWV 236 >gi|307704250|ref|ZP_07641169.1| response regulator [Streptococcus mitis SK597] gi|307622161|gb|EFO01179.1| response regulator [Streptococcus mitis SK597] Length = 210 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGARGYMLKTSRADELLHAVRKVATGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|303248220|ref|ZP_07334483.1| transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] gi|302490358|gb|EFL50269.1| transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] Length = 258 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 63/182 (34%), Gaps = 13/182 (7%) Query: 63 DIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL-P 114 P + Y GD + SG P+ W + + LS+ + + Sbjct: 77 SFPEQWLRAYTAADAFAGDAIVRQALSGPAPLHW--AETTPRLPRPNALSLCRDFRMRQG 134 Query: 115 FAGIAFPVRLGFHKNGYVIFTSE--FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 + + P+ + F E + I+ + Sbjct: 135 WVAASAPLFAAR-ERALFCFAGEVGRHDRRSAAILGHLLPHLHLALSQTLRASVPDREPI 193 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L +G +S +IA LG+ TV ++ + KL AVNR Q +A A+R G Sbjct: 194 ALSRREREVLDWLKEGKSSWDIAMVLGIRERTVRFHVANLMRKLGAVNRAQTVALALRRG 253 Query: 233 YI 234 I Sbjct: 254 LI 255 >gi|240142577|ref|YP_002967090.1| hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens AM1] gi|240012524|gb|ACS43749.1| Hypothetical protein MexAM1_META2p0955 [Methylobacterium extorquens AM1] Length = 296 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 73/205 (35%), Gaps = 32/205 (15%) Query: 63 DIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIE---SSGQLSVRLEGGL 112 + +TY D L + +W I+ V+ + ++ Sbjct: 91 TVSKDWQDTYFSEGFLDVDPCLMRALTSNSSFMWSDIELPPVVNGKVPGARRTMEAARDH 150 Query: 113 LPFAGIAFPVRLGFH-KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---- 167 G+ P+ L + Y F S F ++ E + L++++ Sbjct: 151 GYVDGLVLPLHLVDTKGSPYNSFCSLFWKEDERLLPEVSRRYGHYLHMLAMLWEQKLQDL 210 Query: 168 -----------------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + + L+ RE L A G T+ E A LGLS+ TVN +LG Sbjct: 211 SPQLSTGMLGSISVLGNARSTKALSGRERDVLAWAAHGKTAGETALILGLSMETVNHHLG 270 Query: 211 SATVKLDAVNRIQAIAKAIRFGYIC 235 A KL A N+ A+A AI G I Sbjct: 271 KAQKKLMAANKTHAVAIAINRGVIS 295 >gi|15596333|ref|NP_249827.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|107100589|ref|ZP_01364507.1| hypothetical protein PaerPA_01001614 [Pseudomonas aeruginosa PACS2] gi|254239506|ref|ZP_04932828.1| hypothetical protein PA2G_00120 [Pseudomonas aeruginosa 2192] gi|9947056|gb|AAG04525.1|AE004543_9 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|126192884|gb|EAZ56947.1| hypothetical protein PA2G_00120 [Pseudomonas aeruginosa 2192] Length = 243 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 74/229 (32%), Gaps = 5/229 (2%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS-GDIPNIL 68 + + F + S P +LI EL D Sbjct: 14 RLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPDEDELIDELFFVHGDWAEGRSAQE 73 Query: 69 IETY--GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + Y H P W E VR L G+ PV Sbjct: 74 RDAYLLHCPVTRHILELDEPFFWSK-SPSEDPERMTYRIVRGVRDLGQVNGMQVPVFGRN 132 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLA 185 G V F E L L + A C + L S+ A+ L+ERE LQ Sbjct: 133 GLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSEREREVLQWI 192 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G E+A L +S TV +L +A +L A + QA+A+A+R G I Sbjct: 193 ALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLGDI 241 >gi|251799733|ref|YP_003014464.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547359|gb|ACT04378.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 242 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 30/139 (21%), Positives = 56/139 (40%), Gaps = 26/139 (18%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELF----------- 164 L GY++ E L N + +G Y ++I + Sbjct: 103 TLRKGATGYLLKDMEAESLINAIRSVVNGHAYIHPKVTGKLINQLRRMTYLDEMGVISGA 162 Query: 165 --------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 K + LT RE L+L +G +++ I E L +S TV ++ S K+ Sbjct: 163 AAGMEPGVKFVAGEDNPLTRREAEVLRLMAEGKSNKMIGEYLFISEKTVKNHVSSILQKM 222 Query: 217 DAVNRIQAIAKAIRFGYIC 235 + +R QA+ ++I++G++ Sbjct: 223 EVDDRTQAVIQSIKYGWVT 241 >gi|42784527|ref|NP_981774.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42740459|gb|AAS44382.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 200 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G ++ D + + L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEDLAASIRNIMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 152 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200 >gi|83952460|ref|ZP_00961191.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius nubinhibens ISM] gi|83836133|gb|EAP75431.1| autoinducer-binding transcriptional regulator LuxR [Roseovarius nubinhibens ISM] Length = 251 Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 75/211 (35%), Gaps = 26/211 (12%) Query: 48 QQLICELHNYD--LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVI 98 Q L C D + +P Y D + P W+ + + Sbjct: 40 QILFCSSTGPDRSQNWHTLPPGWTARYAQQGYHRIDPVRAEAQRRVTPFDWRPLDWQR-- 97 Query: 99 ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN---------EVIIEA 149 ++ L + G P + + T++ +I+ A Sbjct: 98 PAARALRADAVAHGIGPQGFTIPAHGPNGQLALLSITADRDDATWTDLTRANRFALILAA 157 Query: 150 HGACYQVITDFLELFKKRS------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 H +++++ + A L+ RET + L G + +IA KL +S H Sbjct: 158 HALHHKIMSQPDAGLGEDPDSAAATPPAPRLSPRETDVITLLARGDSRGQIATKLAISEH 217 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ +Y+ +A KL AVN A+A+AI G I Sbjct: 218 TLRSYIETARHKLGAVNTPHAVARAIAMGMI 248 >gi|15806010|ref|NP_294711.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6458715|gb|AAF10563.1|AE001951_3 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 239 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN---LTER 177 L GY++ + L V A G + LE F S+ L+ R Sbjct: 118 LEAGAAGYLLKNASEDDLLGAVRAVAAGESALHPSIARKVLERFSVASTPTPPEDDLSPR 177 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L++A G T++EIA L +S TV +L + KL +R +A+ I+ G+I Sbjct: 178 ELEVLRVAASGRTNKEIARDLDISPRTVQVHLANIFSKLGVGSRTEAVLHGIKRGWI 234 >gi|83858980|ref|ZP_00952501.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633] gi|83852427|gb|EAP90280.1| DNA-binding response regulator [Oceanicaulis alexandrii HTCC2633] Length = 200 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 42/111 (37%), Positives = 55/111 (49%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GYV+ + LA+ V A G + I EL + SA LT RE L+ Sbjct: 94 LQAGVLGYVLKDAPSEELADAVRRVAQGQ--RAIAS--ELAETAWSAPVVLTARERDILR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G +++EIA L LS TV YL AT KL A NRI+A A G++ Sbjct: 150 LVEEGKSNKEIARLLNLSPGTVRNYLAEATQKLGAANRIEAFQIARENGWL 200 >gi|65317330|ref|ZP_00390289.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] Length = 200 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S L + G ++ D + + L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEDLXASIRNVMKGK-REISQDLMFGLWQEQ---NPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 152 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200 >gi|239940109|ref|ZP_04692046.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239986597|ref|ZP_04707261.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291443540|ref|ZP_06582930.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346487|gb|EFE73391.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 223 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELF----KKRSSAAR 172 L +G+++ + L + + A G +++ + + + A Sbjct: 97 LRAGASGFLLKDAPAAELVQAIRVVAAGEAMLAPSITRRLLDKYADHLPSGEEPVPDALH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA +L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAAELFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|121663597|emb|CAM12356.1| quorum sensing LuxR family sensor regulator [Burkholderia glumae] Length = 349 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 18/225 (8%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + + Q+L ++ R+ F + P Q L+ Y Sbjct: 15 AENEQQLFHQVSAYSKRL---GFEYCCYGIRVPQPGSQPLVEIFDTYPPGWMAHYQARNY 71 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKN 129 D + + IIW +++ Q S+ + + G+A Sbjct: 72 IEIDPTVRDGAASPNMIIW------PDADAAEQPSLWRDARDFGMSVGVAQSSWAARGVF 125 Query: 130 GYVIFTSEFLMLANEVII-------EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G + L I + ++ FL + K +A+ +LT+RE L Sbjct: 126 GLLTIARRSDRLTPAEINSLTLQANWLANLSHSLMGRFL-VPKLSPAASISLTKREREVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +G T+ EI E+L +S TV ++ + KL A N++QA+ + Sbjct: 185 SWTSEGRTASEIGEQLNISERTVTFHINNILAKLGAANKVQAVGR 229 >gi|319442313|ref|ZP_07991469.1| putative two component response regulator [Corynebacterium variabile DSM 44702] Length = 213 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + V A GA + L + A LT RE LQL Sbjct: 105 AGAVGYLLKDAPPAELISAVRAAATGATAMSGSVATRLMHREEEPANALTSRELEVLQLV 164 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ EI L LS TV ++L KL +R A+A A G + Sbjct: 165 ADGRSNREIGATLFLSEATVKSHLVHINTKLGVRSRTSAVAAAREAGML 213 >gi|297626683|ref|YP_003688446.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922448|emb|CBL57021.1| two-component response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 217 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKR------SSA 170 LG +G+++ S+ L V A+G +VI + R + Sbjct: 93 LGAGASGFILKNSDPTELVAAVRAVANGDALLSPSVTLRVIRAMAQGHAPREVTPGADAE 152 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE L+ G ++ EIA +L +S TV ++ + KL +R+QA+A A + Sbjct: 153 LARLTDREVEVLRALARGLSNAEIAAELFVSEATVKTHVSNVLSKLGLRDRVQAVAHAYQ 212 Query: 231 FGYIC 235 G + Sbjct: 213 HGLVS 217 >gi|257893584|ref|ZP_05673237.1| regulatory protein [Enterococcus faecium 1,231,408] gi|260560505|ref|ZP_05832679.1| regulatory protein [Enterococcus faecium C68] gi|261209022|ref|ZP_05923427.1| regulatory protein [Enterococcus faecium TC 6] gi|289565166|ref|ZP_06445618.1| response regulator LiaR [Enterococcus faecium D344SRF] gi|293563601|ref|ZP_06678047.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1162] gi|293569319|ref|ZP_06680617.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1071] gi|294615290|ref|ZP_06695166.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1636] gi|294619055|ref|ZP_06698550.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1679] gi|314939788|ref|ZP_07847008.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|314942017|ref|ZP_07848877.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|314950011|ref|ZP_07853304.1| response regulator receiver domain protein [Enterococcus faecium TX0082] gi|314953533|ref|ZP_07856445.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|314992148|ref|ZP_07857595.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|314995132|ref|ZP_07860248.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|257829963|gb|EEV56570.1| regulatory protein [Enterococcus faecium 1,231,408] gi|260073507|gb|EEW61835.1| regulatory protein [Enterococcus faecium C68] gi|260077061|gb|EEW64783.1| regulatory protein [Enterococcus faecium TC 6] gi|289162987|gb|EFD10835.1| response regulator LiaR [Enterococcus faecium D344SRF] gi|291588025|gb|EFF19875.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1071] gi|291591848|gb|EFF23481.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1636] gi|291594716|gb|EFF26098.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1679] gi|291604451|gb|EFF33939.1| DNA-binding response regulator, LuxR family [Enterococcus faecium E1162] gi|313590623|gb|EFR69468.1| response regulator receiver domain protein [Enterococcus faecium TX0133a01] gi|313593289|gb|EFR72134.1| response regulator receiver domain protein [Enterococcus faecium TX0133B] gi|313594456|gb|EFR73301.1| response regulator receiver domain protein [Enterococcus faecium TX0133A] gi|313599194|gb|EFR78039.1| response regulator receiver domain protein [Enterococcus faecium TX0133C] gi|313640928|gb|EFS05508.1| response regulator receiver domain protein [Enterococcus faecium TX0133a04] gi|313643658|gb|EFS08238.1| response regulator receiver domain protein [Enterococcus faecium TX0082] Length = 210 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERETS 180 GY++ TS +A+ + G +V T +E +R+ LT RE Sbjct: 96 AGAAGYLLKTSTAHEIADAIRATQRGERVLEPEVTTKMMEKMSRRNDPVLHEELTNRENE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KL+ +R QA A + G + Sbjct: 156 ILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209 >gi|269126536|ref|YP_003299906.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311494|gb|ACY97868.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 226 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 12/120 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR---------SSAARN 173 +G+++ + L + + I A G V L+ F R Sbjct: 100 AGASGFLLKDAPPEDLVSAIRIVAAGDAIVAPSVTRRLLDKFASRLPSMRQTPPPPGLET 159 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+ G ++ EIA +L +S TV ++G+ KL +R+QA+ A G Sbjct: 160 LTEREREVLKHVARGLSNAEIARELVVSETTVKTHVGNVLAKLGLRDRVQAVVYAYETGM 219 >gi|254234270|ref|ZP_04927593.1| hypothetical protein PACG_00108 [Pseudomonas aeruginosa C3719] gi|126166201|gb|EAZ51712.1| hypothetical protein PACG_00108 [Pseudomonas aeruginosa C3719] Length = 243 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 74/229 (32%), Gaps = 5/229 (2%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS-GDIPNIL 68 + + F + S P +LI EL D Sbjct: 14 RLRKAATTEAVCREMVEFSARLGFDRVIVCSLFPRPDEDELIDELFFVHGDWAEGRSAQQ 73 Query: 69 IETY--GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + Y H P W E VR L G+ PV Sbjct: 74 RDAYLLHCPVTRHILELDEPFFWSK-SPSEDPERMTYRIVRGVRDLGQVNGMQVPVFGRN 132 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLA 185 G V F E L L + A C + L S+ A+ L+ERE LQ Sbjct: 133 GLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSEREREVLQWI 192 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G E+A L +S TV +L +A +L A + QA+A+A+R G I Sbjct: 193 ALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLGDI 241 >gi|289168573|ref|YP_003446842.1| response regulator [Streptococcus mitis B6] gi|288908140|emb|CBJ22981.1| response regulator [Streptococcus mitis B6] Length = 210 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGAKGYMLKTSSADELLHAVRKVAAGKLAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|319650652|ref|ZP_08004792.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317397833|gb|EFV78531.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 228 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 54/131 (41%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRS-------- 168 L +GY++ + L V + A G Y ++ ++ L + Sbjct: 95 LKTGASGYLLKEMDADALVEAVKVVADGGSYLHPKVTHNLVNEYRRLSAVGAGSSGGYSS 154 Query: 169 -----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQL DG ++ I E L +S TV ++ + K++ +R Q Sbjct: 155 QIEIRRPLHLLTRRECEVLQLLADGKSNRGIGEALYISEKTVKNHVSNILQKMNVNDRTQ 214 Query: 224 AIAKAIRFGYI 234 A+ AI+ G++ Sbjct: 215 AVVVAIKNGWV 225 >gi|315612573|ref|ZP_07887486.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] gi|315315554|gb|EFU63593.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] Length = 210 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + LT R Sbjct: 90 MPV-LNAGAKGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|306817801|ref|ZP_07451542.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239] gi|304649450|gb|EFM46734.1| DNA-binding response regulator [Mobiluncus mulieris ATCC 35239] Length = 233 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 22/133 (16%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSS----------- 169 L +G+++ ++ L + A G ++ L++F + Sbjct: 100 LRAGASGFLLKDAKPEELVAAIRAVAAGDATISPRITKKMLDMFAPQLPDENAEADAAGA 159 Query: 170 --------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 A +LTERET L+L G T++E+A+KL +S+ TV ++G+ K+ A +R Sbjct: 160 GATSADAVALASLTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDR 219 Query: 222 IQAIAKAIRFGYI 234 +QA+ A G + Sbjct: 220 VQAVIFAYENGLV 232 >gi|227876856|ref|ZP_03994965.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|269977833|ref|ZP_06184790.1| response regulator protein VraR [Mobiluncus mulieris 28-1] gi|227842753|gb|EEJ52953.1| possible response regulator [Mobiluncus mulieris ATCC 35243] gi|269934003|gb|EEZ90580.1| response regulator protein VraR [Mobiluncus mulieris 28-1] Length = 233 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 22/133 (16%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSS----------- 169 L +G+++ ++ L + A G ++ L++F + Sbjct: 100 LRAGASGFLLKDAKPEELVAAIRAVAAGDATISPRITKKMLDMFAPQLPDENAGADAAGA 159 Query: 170 --------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 A +LTERET L+L G T++E+A+KL +S+ TV ++G+ K+ A +R Sbjct: 160 GATSADAVALASLTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDR 219 Query: 222 IQAIAKAIRFGYI 234 +QA+ A G + Sbjct: 220 VQAVIFAYENGLV 232 >gi|154688084|ref|YP_001423245.1| YocG [Bacillus amyloliquefaciens FZB42] gi|154353935|gb|ABS76014.1| YocG [Bacillus amyloliquefaciens FZB42] Length = 199 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 4/110 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ S L + + G EL + S LTERE L+ Sbjct: 92 LKAGVSGYMLKDSPSDELVSAIRSVMKGRRVYA----PELMEDIYSEENPLTEREKEVLE 147 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L DG ++EIA L + TV Y+ KL+ NRI+AI ++ G+ Sbjct: 148 LVADGKNTKEIANALSIKSGTVRNYVSMILDKLEVKNRIEAITRSKEKGW 197 >gi|218659948|ref|ZP_03515878.1| autoinducer transcriptional regulator protein [Rhizobium etli IE4771] Length = 246 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 74/200 (37%), Gaps = 16/200 (8%) Query: 48 QQLICELHNYDLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIES 100 + I + + P+ + Y D + S LP W+ I + E+ Sbjct: 44 ARTIVDSVDAPFVRTTYPDSWVSRYLLNDYINVDPIIREGFSRQLPFDWREID---ITET 100 Query: 101 SGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGACYQ 155 + + V E + G++ P+ + + + S E+ ++ + + E + Sbjct: 101 AQEFMVDAELHGIGSNGVSVPI-VDKSRRSLLSINSQKSDDEWTLIERQFLPEWLELGFL 159 Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + L RE CL A G S++I + LGLS HT YL +A K Sbjct: 160 LHRKAVFELHGENDPVPALGSREIECLHWASRGKDSKDIGKILGLSEHTTRGYLKAARYK 219 Query: 216 LDAVNRIQAIAKAIRFGYIC 235 L AIA A+ I Sbjct: 220 LGCPTLSAAIAHAVHLNLIT 239 >gi|69248021|ref|ZP_00604584.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus faecium DO] gi|227550521|ref|ZP_03980570.1| LuxR family response regulator [Enterococcus faecium TX1330] gi|257880197|ref|ZP_05659850.1| regulatory protein [Enterococcus faecium 1,230,933] gi|257882998|ref|ZP_05662651.1| regulatory protein [Enterococcus faecium 1,231,502] gi|257888548|ref|ZP_05668201.1| regulatory protein [Enterococcus faecium 1,141,733] gi|257891419|ref|ZP_05671072.1| regulatory protein [Enterococcus faecium 1,231,410] gi|257897077|ref|ZP_05676730.1| regulatory protein [Enterococcus faecium Com12] gi|258614385|ref|ZP_05712155.1| LuxR family DNA-binding response regulator [Enterococcus faecium DO] gi|293377300|ref|ZP_06623504.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] gi|293572485|ref|ZP_06683464.1| transcriptional regulatory protein DegU [Enterococcus faecium E980] gi|294622136|ref|ZP_06701212.1| transcriptional regulatory protein DegU [Enterococcus faecium U0317] gi|68194589|gb|EAN09079.1| regulatory protein, LuxR:Response regulator receiver [Enterococcus faecium DO] gi|227180422|gb|EEI61394.1| LuxR family response regulator [Enterococcus faecium TX1330] gi|257814425|gb|EEV43183.1| regulatory protein [Enterococcus faecium 1,230,933] gi|257818656|gb|EEV45984.1| regulatory protein [Enterococcus faecium 1,231,502] gi|257824602|gb|EEV51534.1| regulatory protein [Enterococcus faecium 1,141,733] gi|257827779|gb|EEV54405.1| regulatory protein [Enterococcus faecium 1,231,410] gi|257833642|gb|EEV60063.1| regulatory protein [Enterococcus faecium Com12] gi|291598337|gb|EFF29424.1| transcriptional regulatory protein DegU [Enterococcus faecium U0317] gi|291607402|gb|EFF36745.1| transcriptional regulatory protein DegU [Enterococcus faecium E980] gi|292643992|gb|EFF62098.1| response regulator receiver domain protein [Enterococcus faecium PC4.1] Length = 210 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERETS 180 GY++ TS +A+ + G +V T +E +R+ LT RE Sbjct: 96 AGAAGYLLKTSTAHEIADAIRATQRGERVLEPEVTTKMMEKMSRRNEPVLHEELTNRENE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KL+ +R QA A + G + Sbjct: 156 ILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209 >gi|329939330|ref|ZP_08288666.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301559|gb|EGG45453.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 224 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR---- 172 L +G+++ + LA V + A G ++IT+F + S + Sbjct: 98 LRAGASGFLLKDASAEQLAEAVRVVAAGDGLLAPGVTRRLITEFTRMRSGPRSPLKERVG 157 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIAE+L ++ TV ++G VKL +R QA A G Sbjct: 158 TLTERETEVLALIAQGLSNAEIAERLCVAEQTVKTHVGRILVKLGLRDRTQAAVYAFESG 217 Query: 233 YI 234 + Sbjct: 218 VV 219 >gi|218900478|ref|YP_002448889.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543280|gb|ACK95674.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 200 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G EL L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEDLAAAIRNVMKGKR----EVSQELMFGLWQEQNPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 152 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 200 >gi|257899016|ref|ZP_05678669.1| regulatory protein [Enterococcus faecium Com15] gi|257836928|gb|EEV62002.1| regulatory protein [Enterococcus faecium Com15] Length = 210 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERETS 180 GY++ TS +A+ + G +V T +E +R+ LT RE Sbjct: 96 AGAAGYLLKTSTAHEIADAIRATQRGERVLEPEVTTKMMEKMSRRNEPVLHEELTNRENE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KL+ +R QA A + G + Sbjct: 156 ILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209 >gi|222081950|ref|YP_002541315.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221726629|gb|ACM29718.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 260 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 12/173 (6%) Query: 74 DDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLL----PFAGIAFPVRLGFHK 128 D P W +++ +T I + L G+ PV + Sbjct: 80 DPVQQVALRTSAPFFWNYNVEADTAINRYLGENTEPVARYLNERDMSTGVTVPVHMPRGD 139 Query: 129 NGYVI---FTSEFLMLANEVIIEAH-GACYQVITDFLELF---KKRSSAARNLTERETSC 181 V F + N + A G V + +RS LTERE C Sbjct: 140 YATVTGIRFGANKDFERNALRYIADFGLLAHVFHETAYALFDSSERSVGKMRLTEREREC 199 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ + +G +++EI+ + SV TV +L SA KL A NR QA+ +A + + Sbjct: 200 LRHSAEGLSAKEISRIIDRSVPTVVMHLNSAAKKLGAKNRTQAVVRATHYRLL 252 >gi|119715674|ref|YP_922639.1| response regulator receiver [Nocardioides sp. JS614] gi|119536335|gb|ABL80952.1| response regulator receiver [Nocardioides sp. JS614] Length = 213 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR------NLTER 177 +GY++ S +A V + A G + ++ FK+ S R LTER Sbjct: 94 GASGYLLKDSSIEEVAQAVRVVADGQSLISPSMAVKLIDEFKQMSRPERDHVPGLRLTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L G + EIA++L +S +TV ++ + KL +R++A+ A++ + Sbjct: 154 ELEVLRLVAKGMNNREIAKELFISENTVKNHVRNILEKLQLHSRMEAVMYAVKEKLL 210 >gi|220933015|ref|YP_002509923.1| two component transcriptional regulator, LuxR family [Halothermothrix orenii H 168] gi|219994325|gb|ACL70928.1| two component transcriptional regulator, LuxR family [Halothermothrix orenii H 168] Length = 211 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC--YQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY+ + L + G + + + L+ RE L+L Sbjct: 99 GAEGYIQKDVKPEELKRAIDKVIKGDKVFPRSTENEVREVVNEKYEVCELSSREQEVLEL 158 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G ++++IA++L +S TV ++ + KL +R QA+ A++ G + Sbjct: 159 LAQGMSNKQIAQELFISEKTVKNHVSNILRKLSVNDRTQAVIVALKRGLVS 209 >gi|114799307|ref|YP_759854.1| LuxR family transcriptional regulator [Hyphomonas neptunium ATCC 15444] gi|114739481|gb|ABI77606.1| transcriptional regulator, LuxR family [Hyphomonas neptunium ATCC 15444] Length = 254 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 66/168 (39%), Gaps = 11/168 (6%) Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 G+ F +H W+ ++ + ++ G I P+ G V Sbjct: 86 GEPFCYHGGKMHS---WRQVRALEAVN--RKIDPEAYGSYGVQGAIVAPIHSPMGVIGAV 140 Query: 133 IFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKR-----SSAARNLTERETSCLQLAG 186 ++ ++ + I EA GA Y + FL +K T RE CL+ A Sbjct: 141 VWATDDEAVDVSGIFEARGAELYMLALKFLSAYKDAVLPSADPEMVEFTRREIQCLKWAA 200 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EIA +G+S T+ ++ +A+ KL R Q I A GYI Sbjct: 201 AGKTDSEIATIMGVSAPTIRFHMTNASRKLGVSGRSQTIRLATTLGYI 248 >gi|167838741|ref|ZP_02465600.1| autoinducer-binding transcriptional regulator, LuxR family protein [Burkholderia thailandensis MSMB43] Length = 137 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 9/135 (6%) Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSE--FLMLANEVIIEA------HGACYQVITD 159 G++ PV + ++ F A++++ G + + + Sbjct: 4 EAKSYGLVYGLSCPVHDRSGAISMLSMATDDPFEHDASDILRLLSLSQLLAGFVHAAMQE 63 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L+ +R + +LT RE LQ AG G T+ EI++ LG+S T+ +L +A K+ A Sbjct: 64 LLDCRLRRQGSC-DLTARERESLQWAGRGKTAWEISKILGISERTIVFHLSNAARKIGAN 122 Query: 220 NRIQAIAKAIRFGYI 234 NR QA+ A G I Sbjct: 123 NRAQAVVMASARGLI 137 >gi|271962124|ref|YP_003336320.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505299|gb|ACZ83577.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 213 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 + GY++ + + V A G +V+T F + +A LTE Sbjct: 93 MRAGARGYLLKEAGAEEIGRAVHAVAAGEAIYGPEIARRVLTYFAGMPDPSRTAFPELTE 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+L G + EIA L LS TV ++ + +KL +R QAI +A G Sbjct: 153 REREVLELVAQGRGNNEIAGILFLSGKTVRNHVSNIFMKLQVADRAQAIVRAREAGL 209 >gi|146320266|ref|YP_001199977.1| response regulator [Streptococcus suis 98HAH33] gi|223933224|ref|ZP_03625215.1| two component transcriptional regulator, LuxR family [Streptococcus suis 89/1591] gi|253751279|ref|YP_003024420.1| response regulator protein [Streptococcus suis SC84] gi|253753180|ref|YP_003026320.1| response regulator protein [Streptococcus suis P1/7] gi|253755003|ref|YP_003028143.1| response regulator protein [Streptococcus suis BM407] gi|330832254|ref|YP_004401079.1| response regulator [Streptococcus suis ST3] gi|145691072|gb|ABP91577.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Streptococcus suis 98HAH33] gi|223898154|gb|EEF64524.1| two component transcriptional regulator, LuxR family [Streptococcus suis 89/1591] gi|251815568|emb|CAZ51151.1| response regulator protein [Streptococcus suis SC84] gi|251817467|emb|CAZ55208.1| response regulator protein [Streptococcus suis BM407] gi|251819425|emb|CAR44899.1| response regulator protein [Streptococcus suis P1/7] gi|292557848|gb|ADE30849.1| regulatory protein, LuxR: Response regulator receiver [Streptococcus suis GZ1] gi|319757560|gb|ADV69502.1| response regulator [Streptococcus suis JS14] gi|329306477|gb|AEB80893.1| response regulator [Streptococcus suis ST3] Length = 213 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 3/117 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L GY++ TS + + A G A + +E K+ +LT RE Sbjct: 94 PV-LEAGARGYMLKTSSADEILAAIRKVALGEYAIETEVEKKVEHHKRHPDLHDDLTARE 152 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L GY ++ IA++ +S+ TV ++ + KL +R QA+ A + G + Sbjct: 153 REILTLLAKGYDNQRIADESFISLKTVKTHVSNILSKLAVSDRTQAVVYAFQHGLVA 209 >gi|257885240|ref|ZP_05664893.1| regulatory protein [Enterococcus faecium 1,231,501] gi|257821092|gb|EEV48226.1| regulatory protein [Enterococcus faecium 1,231,501] Length = 210 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERETS 180 GY++ TS +A+ + G +V T +E +R+ LT RE Sbjct: 96 AGAAGYLLKTSTAHEIADAIRATQRGERVLEPEVTTKMMEKMSRRNDPVLHEELTNRENE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KL+ +R QA A + G + Sbjct: 156 ILMLISEGKSNQEIADELFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHGLV 209 >gi|219849670|ref|YP_002464103.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543929|gb|ACL25667.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 216 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELF----KKRSSAAR 172 L GY++ ++ + V I G +V+ +F L S Sbjct: 94 LKAGARGYMLKDADSHEIVEAVRIVTRGEALIQPSITRKVLAEFTRLAGGHTPVTSPLTE 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G ++ EIA++L +S TV ++ S KLD +R QAI +A Sbjct: 154 PLTEREMDVLHGIAAGKSNREIADQLCISEGTVKNHVSSLLAKLDVRDRTQAIIRARELR 213 Query: 233 YI 234 I Sbjct: 214 LI 215 >gi|306825821|ref|ZP_07459160.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432182|gb|EFM35159.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 210 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGAKGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|229020573|ref|ZP_04177315.1| Two-component response regulator [Bacillus cereus AH1273] gi|229026791|ref|ZP_04183123.1| Two-component response regulator [Bacillus cereus AH1272] gi|228734514|gb|EEL85176.1| Two-component response regulator [Bacillus cereus AH1272] gi|228740737|gb|EEL90993.1| Two-component response regulator [Bacillus cereus AH1273] Length = 189 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 4/108 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY++ S LA+ + G + I+ EL L++RE L LA Sbjct: 86 GVHGYLLKDSPSEDLASAIRNVMKGK--REISQ--ELMFGLWQEQNPLSDREKEVLVLAK 141 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KL+A NRI+AI A G+I Sbjct: 142 EGKTTNEIAKMLYLSPGTVRNYISEVLAKLEAKNRIEAITIAEEKGWI 189 >gi|156741128|ref|YP_001431257.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232456|gb|ABU57239.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 222 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 15/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELF--------KKRS 168 L GY++ +A V A G +V+ +FL L + Sbjct: 94 LKAGARGYLLKDISSEEMAEAVRTVARGEALIQPSIARKVVAEFLRLAVSAPAAPERMTP 153 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LTERE L+ G +++EIA L ++ TV ++ + KLD +R QA+ KA Sbjct: 154 KSPNALTERELDVLKALARGMSNKEIAAALVITEGTVKTHISNILAKLDVRDRTQAVLKA 213 Query: 229 IRFGYI 234 + + Sbjct: 214 QQLRLL 219 >gi|291295648|ref|YP_003507046.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470607|gb|ADD28026.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 200 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 55/111 (49%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ + LA V G + I L + S LT+RE L+ Sbjct: 94 LEAGASGYLLKDAPSSELAEAVRRVYLGG--RAIDPLLA--AQAWSEEDPLTDRERRVLR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG+G TS EIA +LGLS TV YL A KL A NR++A A G++ Sbjct: 150 LAGEGRTSAEIAAELGLSEGTVRNYLSEAISKLGAQNRVEAARIAREKGWL 200 >gi|307700594|ref|ZP_07637626.1| response regulator receiver domain protein [Mobiluncus mulieris FB024-16] gi|307614239|gb|EFN93476.1| response regulator receiver domain protein [Mobiluncus mulieris FB024-16] Length = 233 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 22/133 (16%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSS----------- 169 L +G+++ ++ L + A G ++ L++F + Sbjct: 100 LRAGASGFLLKDAKPEELVAAIRAVAAGDATISPRITKKMLDMFAPQLPDENAGADAAGA 159 Query: 170 --------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 A +LTERET L+L G T++E+A+KL +S+ TV ++G+ K+ A +R Sbjct: 160 GATSADAVALASLTERETEVLKLIAHGMTNQELADKLFISMTTVKTHVGNILNKIGARDR 219 Query: 222 IQAIAKAIRFGYI 234 +QA+ A G + Sbjct: 220 VQAVIFAYENGLV 232 >gi|307710534|ref|ZP_07646970.1| response regulator [Streptococcus mitis SK564] gi|307618687|gb|EFN97827.1| response regulator [Streptococcus mitis SK564] Length = 210 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGAKGYMLKTSSAGELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|226303587|ref|YP_002763545.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226182702|dbj|BAH30806.1| probable NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 205 Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 49/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + + L + V A G +L + +L+ RE L+L Sbjct: 97 AGASGYLLKDTPPVELLSAVRAAASGDSVLSPAIASKLMTRVRKPETSLSPREIEVLKLV 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI ++L LS TV ++L KL +R A+A+A G I Sbjct: 157 AAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAVARARELGSI 205 >gi|326381529|ref|ZP_08203223.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] gi|326199776|gb|EGD56956.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] Length = 209 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFL-ELFKKRSSAARNLT 175 L +G+++ + L V + A G ++I +K ++AA +LT Sbjct: 91 LRIGASGFLLKDAPADELVRAVRVVAAGDALLAPSVTKRLIEQVTSRTTRKATAAAESLT 150 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L DG ++ EIA++L +S TV ++ + KL +R QA+ A G Sbjct: 151 PRELEVLLTVADGKSNGEIADELFVSEQTVKTHVSNMLTKLGLRDRAQAVVFAYENGL 208 >gi|257869647|ref|ZP_05649300.1| regulatory protein [Enterococcus gallinarum EG2] gi|257803811|gb|EEV32633.1| regulatory protein [Enterococcus gallinarum EG2] Length = 209 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 4/112 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA-ARNLTERETSC 181 GY++ TS +A+ + G +V T ++ R+ +LT RE Sbjct: 96 AGAAGYLLKTSTAHEIADAIRATQRGERVLEPEVTTKMMDRLTNRTPILHDDLTNREKEV 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L +G +++EIA++L +++ TV ++ + KL+ +R QA A + G Sbjct: 156 LLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHGL 207 >gi|182439643|ref|YP_001827362.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780308|ref|ZP_08239573.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178468159|dbj|BAG22679.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660641|gb|EGE45487.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 223 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELF----KKRSSAAR 172 L +G+++ + L + + A G +++ + + A Sbjct: 97 LRAGASGFLLKDAPAAELVQAIRVVAAGEAMLAPSITRRLLDKYADHLPSGEDPVPDALH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|190890329|ref|YP_001976871.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695608|gb|ACE89693.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 234 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 8/226 (3%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++ + + L NFAL I+ A P ++ + + + G L Sbjct: 17 RAINRTDFFRLLKAAAQHYHFDNFALARISEAS-APFGERDVVITNVPERRVGLFIATLR 75 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 E G+ P+ E + S RL + P+ + Sbjct: 76 EALGNVRAKSAQFLATPV------HGRSAEPAAYPSDRLFNEFRSGVFLFIPLFTPEGRR 129 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 ++ + I + ++ E + R LT+RE ++ +G Sbjct: 130 YCLVLSGVREEPDQGEIADMLLDAMRIFDKLYEEILTHEMSGR-LTQREAEIVKWTSEGK 188 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 189 TSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVS 234 >gi|325917294|ref|ZP_08179515.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325536514|gb|EGD08289.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 254 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 15/188 (7%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQSIQEETV-----IESSGQLSVRLEGGLL 113 GD+ ++ E D P +W + + + + R Sbjct: 65 GDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYRTDGNRPGVEYVGAQHRQVTRYLCDSG 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KK 166 G+ P+ L + + + + EA + + ++ + ++ Sbjct: 125 MGNGVTVPLHLPGGAFATLSGAVDAVAAEAPRLAEAQLSPFLLLAHAFQARAQELLDPQE 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R LT RE CLQ + G T++ IA L S TVN +L SA KL A NR++A+ Sbjct: 185 RRCHHIALTRRERECLQYSAKGLTAKSIAAALNRSTATVNLHLNSAARKLGARNRVEAVV 244 Query: 227 KAIRFGYI 234 + + + + Sbjct: 245 RGMHYRLL 252 >gi|302531265|ref|ZP_07283607.1| response regulator [Streptomyces sp. AA4] gi|302440160|gb|EFL11976.1| response regulator [Streptomyces sp. AA4] Length = 218 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF-------KKRSSAARN 173 L +G+++ ++ L + + A G V L+ F + + Sbjct: 93 LQGGASGFLLKDTQPDYLVSALRSVADGDAVMSPSVTRRLLDRFVGSGGSEMRDPAELDV 152 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G ++ EIAE L LS TV ++G KLD +R+QA+ A G Sbjct: 153 LTDREREVLVLIAKGMSNVEIAETLFLSEATVKTHVGRILSKLDLRDRVQAVVLAYETGL 212 >gi|229181601|ref|ZP_04308926.1| Two-component response regulator [Bacillus cereus 172560W] gi|228601797|gb|EEK59293.1| Two-component response regulator [Bacillus cereus 172560W] Length = 189 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G +V D + + L++RE + LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REVSQDLMFGLWQEQ---NPLSDREKEVMLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+I Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWI 189 >gi|309790732|ref|ZP_07685281.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308227223|gb|EFO80902.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 193 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 46/118 (38%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L GYV+ S V G + Q++ + S LT Sbjct: 75 LRAGVVGYVLKDSTRRTFVAAVRQALRGETFINGSMTVQLLQRLATTHESSSPPRIQLTR 134 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQL G T+ EI + L +SV TV ++ KL +R QA +AI G + Sbjct: 135 REQEVLQLITQGKTNREIGQLLNISVGTVKIHVEHIIAKLGVSDRTQAAVRAIDLGLL 192 >gi|312864942|ref|ZP_07725172.1| response regulator receiver domain protein [Streptococcus downei F0415] gi|311099562|gb|EFQ57776.1| response regulator receiver domain protein [Streptococcus downei F0415] Length = 213 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + A G A + ++ + +LT RE L Sbjct: 98 AGAKGYMLKTSSAAEILNSIRKVAQGQVAIETEVDQKIKYHDQHPDLHDDLTARERDVLA 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 158 LLAKGYDNQTIADELFISLKTVKTHVSNILAKLNVEDRTQAVVYAFQHNLV 208 >gi|218892898|ref|YP_002441767.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218773126|emb|CAW28938.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 243 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 74/229 (32%), Gaps = 5/229 (2%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS-GDIPNIL 68 + + F + S P +LI EL D Sbjct: 14 RLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAEGRSAQQ 73 Query: 69 IETY--GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + Y H P W E VR L G+ PV Sbjct: 74 RDAYLLHCPVTRHILELDEPFFWSK-SPSEDPERMTYRIVRGVRDLGQVNGMQVPVFGRN 132 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLA 185 G V F E L L + A C + L S+ A+ L+ERE LQ Sbjct: 133 GLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSEREREVLQWI 192 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G E+A L +S TV +L +A +L A + QA+A+A+R G I Sbjct: 193 ALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLGDI 241 >gi|294010385|ref|YP_003543845.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292673715|dbj|BAI95233.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 265 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 85/227 (37%), Gaps = 15/227 (6%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL---IETYGDDFLF 78 + + R + + S + + G+ P + Sbjct: 36 DAVMDLCGLRTAVTHNVASREPMRDGNGAVLASEIFGFR-GEEPRWWEVPQLALSSPIVH 94 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRL---EGGLLPFAGIAFPVRLGFHKNGYVIFT 135 P + T + + + L + A I P+ L F + G F Sbjct: 95 ACRVEAEPFWCNAHGFFTRLPNPLLDVIDLHDFRIRAMTAAAIVVPIHLPFGQIGAASFL 154 Query: 136 SEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETSCLQLAGD 187 S + + A A + F++ + K ++ AR LT+RE CL+ A Sbjct: 155 SPEPEANDLSDAYACAADALAVLARAFVQSYVKVTARARPGLGSISLTKREVECLRWAAA 214 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+EEI LGL TV ++ SA+VKLDAVNR Q + KA + G++ Sbjct: 215 GKTNEEIGIILGLQRTTVRFHIRSASVKLDAVNRDQTMFKAAQLGFL 261 >gi|297160246|gb|ADI09958.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 190 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L H +G+++ S L + + A G + + D + + LT RE L Sbjct: 83 LAAHVSGFLLKDSTPDKLCDAIRAVAKG---ERVIDPQLVLAALDDKPQPLTPRELEVLL 139 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G S +IA +L LSV TV YL S KL+A NR+ AI A G++ Sbjct: 140 LASQGEGSAQIAARLYLSVGTVRNYLTSVVTKLNARNRVDAIRIAREAGWL 190 >gi|296390495|ref|ZP_06879970.1| transcriptional regulator [Pseudomonas aeruginosa PAb1] Length = 243 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 77/229 (33%), Gaps = 5/229 (2%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS-GDIPNIL 68 + + F + S P +LI EL D Sbjct: 14 RLRKAATTEAVCREMVEFAVRLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAEGRSAQE 73 Query: 69 IETY--GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + Y H P W E + ++ VR L G+ PV Sbjct: 74 RDAYLLHCPVTRHILELDEPFFWSKSPSEDPARMAYRI-VRGVRDLGQVNGMQVPVFGRN 132 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLA 185 G V F E L L + A C + L SS A+ L+ERE LQ Sbjct: 133 GLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSSGDAQALSEREREVLQWI 192 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G E+A L +S TV +L +A +L A + QA+A+A+R G I Sbjct: 193 ALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLGDI 241 >gi|302552997|ref|ZP_07305339.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] gi|302470615|gb|EFL33708.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] Length = 227 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G+++ + LA V + A G ++I +F L + + + Sbjct: 101 LRAGASGFLLKDASSDQLAEAVRVIAAGDALLAPVITRKLIAEFSRLDDRPRAPLKERIG 160 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERET L L G ++ EIA L ++ TV ++G VKL +R QA A G Sbjct: 161 DLTERETEVLALIAQGLSNAEIARHLFVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 220 Query: 233 YI 234 + Sbjct: 221 LV 222 >gi|158334639|ref|YP_001515811.1| two-component response regulator [Acaryochloris marina MBIC11017] gi|158304880|gb|ABW26497.1| two-component response regulator [Acaryochloris marina MBIC11017] Length = 222 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 14/125 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK-----------KRSS 169 L +GY + + ++ L + + G Y Q+ + K ++++ Sbjct: 98 LAAGADGYCLKSIDWQQLLAVIRLIQGGGTYLDPQIAHKLASMLKSANTPTTAPAHRQTA 157 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A L++RE LQL +G +++EIA +L LS+ T+ +Y+ KL +R+QA AKA+ Sbjct: 158 PATVLSDREREVLQLISEGCSNQEIANQLYLSLGTIKSYVRMILNKLSVDDRVQAAAKAV 217 Query: 230 RFGYI 234 R G I Sbjct: 218 REGLI 222 >gi|21232249|ref|NP_638166.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21114010|gb|AAM42090.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 258 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 47/250 (18%), Positives = 84/250 (33%), Gaps = 23/250 (9%) Query: 7 TGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG---D 63 G+ + + L+ L + + A+ F + P + + L D Sbjct: 8 LGRDLQARETLNACLDRVFRDVCAQGFQSLVYD-YAPVPLSMEGALITPSVFLQRNAPDD 66 Query: 64 IPNILIET---YGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPF---- 115 + N+ E D P +W + T + G V + + Sbjct: 67 MHNVWCEHGYYQNDPVQQRATRRTTPFVWSYRTEGRTEGRTEGVEYVGDQHRQVTRYLCD 126 Query: 116 ----AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------- 164 G+ P+ L + EA + ++ + Sbjct: 127 SDMGTGVTVPLHLPGGAFATFSAAVNATQAEAPRLAEAQLPPFLLLAHAFQARAQELLDP 186 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R LT RE CLQ + G T++ IA L S TVN +L SA KL A NR++A Sbjct: 187 QERRCHHIALTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEA 246 Query: 225 IAKAIRFGYI 234 + + + + + Sbjct: 247 VVRGMHYRLL 256 >gi|229492199|ref|ZP_04386007.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|229320825|gb|EEN86638.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 205 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 49/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + + L + V A G +L + +L+ RE L+L Sbjct: 97 AGASGYLLKDTPPVELLSAVRAAASGDSVLSPAIASKLMTRVRKPETSLSPREIEVLKLV 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI ++L LS TV ++L KL +R A+A+A G I Sbjct: 157 AAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAVARARELGSI 205 >gi|315649433|ref|ZP_07902521.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315275209|gb|EFU38579.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 214 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 6/114 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK---KRSSAARNLTERET 179 Y++ TS +A+ + A G QV + + F+ + A +LT+RE Sbjct: 99 AGAFSYLLKTSRASEVADAIRAAARGQSVLESQVASKMMNRFRHPQNEAPAHNDLTDREM 158 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G ++++IA+ L + + TV ++ + KL +R QA A + G Sbjct: 159 EVLRLVAQGKSNQDIADDLIIGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNGL 212 >gi|116049068|ref|YP_792130.1| transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|115584289|gb|ABJ10304.1| probable transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 243 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 79/232 (34%), Gaps = 11/232 (4%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS-GDIPNIL 68 + + F + S P +LI EL D Sbjct: 14 RLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAEGRSAQE 73 Query: 69 IETY--GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG---LLPFAGIAFPVR 123 + Y H P W + E +++ R+ G L G+ PV Sbjct: 74 RDAYLLHCPVTRHILELDEPFFWS----KNPSEDPARMTYRIVRGVRDLGQVNGMQVPVF 129 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCL 182 G V F E L L + A C + L S+ A+ L+ERE L Sbjct: 130 GRNGLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSEREREVL 189 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Q G E+A L +S TV +L +A +L A + QA+A+A+R G I Sbjct: 190 QWIALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLGDI 241 >gi|322387271|ref|ZP_08060881.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321141800|gb|EFX37295.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 210 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + LT R Sbjct: 90 MPV-LNAGARGYMLKTSSADELFHAVQKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|320011002|gb|ADW05852.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 226 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L +G+++ + L + V + A G V + F +R AA + Sbjct: 99 LRAGASGFLLKDAPPADLISAVRVVAAGDALLAPSVTRRLIADFARRKPAAPSGGPALRL 158 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G +++EIA +L L+ TV ++G KL +R QA+ A Sbjct: 159 NGLTPREREVLELIARGLSNQEIAARLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYES 218 Query: 232 GYIC 235 G + Sbjct: 219 GLVT 222 >gi|21219875|ref|NP_625654.1| two component system DNA binding response regulator [Streptomyces coelicolor A3(2)] gi|256789028|ref|ZP_05527459.1| two component system DNA binding response regulator [Streptomyces lividans TK24] gi|289772921|ref|ZP_06532299.1| two component system DNA binding response regulator [Streptomyces lividans TK24] gi|13122115|emb|CAC32294.1| putative two component system DNA binding response regulator [Streptomyces coelicolor A3(2)] gi|289703120|gb|EFD70549.1| two component system DNA binding response regulator [Streptomyces lividans TK24] Length = 211 Score = 109 bits (272), Expect = 4e-22, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA+ V A G L + + LT RET L L Sbjct: 101 AGATGYLLKDAPPEDLADAVRTAAAGRTALAPAVADRLMHRLRTPGTTLTRRETEVLALV 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +++ I +L L+ TV ++L KLD +R A+A A G I Sbjct: 161 ADGLSNQAIGRRLHLTEGTVKSHLARVYAKLDVDSRTAAVATAGSLGLI 209 >gi|328881294|emb|CCA54533.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 225 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR--------SSAAR 172 L +G+++ + L + + A G + L+ + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYSAHLPTGEEQVPDTLS 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|218672647|ref|ZP_03522316.1| transcriptional regulator, LuxR family protein [Rhizobium etli GR56] Length = 265 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 69/174 (39%), Gaps = 14/174 (8%) Query: 74 DDFLFHFNSGLLPIIWQ------SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D P W ++ + + + ++ L + G+ PV + Sbjct: 87 DPVQQVALRSSAPFFWNYDTNADTLINRFMSDDTAPVTRYLRERDMS-TGVTVPVHMPGG 145 Query: 128 KNGYVI---FTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSSAARNLTERETS 180 V F + + + A + L K RS +LTERE Sbjct: 146 DYATVTGIRFGEDSDFERHALRYIADFNLLAHVFHETAYSLFDRKARSVGTIHLTERERE 205 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL+ + +GY+++EI+ +G SV TV +L +A KL A NR QA+ +A + + Sbjct: 206 CLRHSAEGYSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRLL 259 >gi|171912672|ref|ZP_02928142.1| two-component response regulator [Verrucomicrobium spinosum DSM 4136] Length = 210 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY+ ++ L + G Y + D + +R + RE L Sbjct: 102 AGALGYLQKSAPREDLLKAIRTVGLGKRY-LPGDIAQRLAERLGRPEP-SPREREVLAQM 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA LGLS TV ++ + KL A +R QA+ +AIR G + Sbjct: 160 AKGRSNKEIASVLGLSEETVKRHVSNVLEKLGAQDRTQAVTEAIRRGLL 208 >gi|302546669|ref|ZP_07299011.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|307330767|ref|ZP_07609903.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|302464287|gb|EFL27380.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] gi|306883570|gb|EFN14620.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 223 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF--------KKRSSAAR 172 L +G+++ + L + + A G + L+ + + Sbjct: 97 LRAGASGFLLKDAPATELVQAIRVVAAGEAMLAPSITRRLLDKYAGHLPSGEEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|156744333|ref|YP_001434462.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235661|gb|ABU60444.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 231 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGL 200 N++++ + QV+ F ++ + + + L+ RE L+L G T++EIA+ L + Sbjct: 128 NDLVLSSPDVAAQVLNAFRQMAAEEDTQSIYSPLSPRELQVLELVAAGRTNKEIAKVLDI 187 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV ++ S KL +R QA+ A+R G+I Sbjct: 188 SNQTVKNHISSILRKLAVNDRTQAVVYAMRRGWI 221 >gi|262203128|ref|YP_003274336.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262086475|gb|ACY22443.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 228 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDF--LELFKKRSSAARNL 174 L +G+++ + L V + A G ++IT+ +K + A +L Sbjct: 109 LRIGASGFMLKDAPADELVRAVRVVAAGEALLAPSITRRLITEVTSRRTRRKPNPALASL 168 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L L +G ++ EI +L ++ TV ++ + KL +R QA+ A G Sbjct: 169 TPREREVLDLVAEGKSNAEIGAELFVAEQTVKTHVSNVLAKLGLRDRAQAVVFAYENGL 227 >gi|163848961|ref|YP_001637005.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526915|ref|YP_002571386.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670250|gb|ABY36616.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450794|gb|ACM55060.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 209 Score = 108 bits (271), Expect = 4e-22, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 1/113 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERETSCL 182 L Y+ S+ L + G + + ++S AA LTERE L Sbjct: 97 LRAGAITYIEKESQPEQLLEAIRGAMAGKAVLAPALMQRILEAQTSKAADTLTEREREVL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +L +G T+ EIA +L +S TV ++ S KL +R QA A+R G + Sbjct: 157 KLVAEGLTNAEIASRLTVSEETVKTHVASILRKLGLAHRTQAAIYALRHGLVS 209 >gi|296330376|ref|ZP_06872857.1| two-component response regulator (YvfT) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676019|ref|YP_003867691.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296152644|gb|EFG93512.1| two-component response regulator (YvfT) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414263|gb|ADM39382.1| two-component response regulator (paired with YvfT) [Bacillus subtilis subsp. spizizenii str. W23] Length = 200 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ E LA+ + G +V + L R LT RE L+LA Sbjct: 96 AGVHGYLLKDGEIDDLADAIRKCVKGK--RVFSPELTFNMMRD--ENPLTVREQEILRLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+++I +L LS TV Y+ KLDA NR +A + A G+I Sbjct: 152 ALGKTTKDITLELYLSQGTVRNYISEIIQKLDAKNRTEAASIAEEKGWI 200 >gi|270293338|ref|ZP_06199547.1| DNA-binding response regulator VraR [Streptococcus sp. M143] gi|270278187|gb|EFA24035.1| DNA-binding response regulator VraR [Streptococcus sp. M143] Length = 210 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + LT R Sbjct: 90 MPV-LNAGAKGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|46199289|ref|YP_004956.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55981321|ref|YP_144618.1| response regulator [Thermus thermophilus HB8] gi|46196914|gb|AAS81329.1| transcriptional regulatory protein [Thermus thermophilus HB27] gi|55772734|dbj|BAD71175.1| response regulator [Thermus thermophilus HB8] Length = 215 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 GY++ + L + + G +I DF + L+ERE Sbjct: 96 AGARGYLLKDVDARELVDAIRRVHAGEVLLDAELAGHIIQDFRAKKEASQPLHAELSERE 155 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L GYT++EIA +L LS TV L KL NR QA AIR G Sbjct: 156 VQILRLVAQGYTNQEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREGL 210 >gi|297155058|gb|ADI04770.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 221 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-------SAARNLTE 176 L +G+++ + +A+ + + A G L R + LT Sbjct: 99 LRAGADGFILKRTPSQAIAHAIRLVATGDSVLFPDAVRRLVAARPLPPVGPAAGHAPLTA 158 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RET L+L G ++ +IA +L +S+ TV ++ + KL A NR QA+ A G + Sbjct: 159 RETEILRLMATGLSNPDIAGRLTVSLETVKTHVSNLLTKLGAQNRTQAVILAYESGLVV 217 >gi|229014521|ref|ZP_04171639.1| Two-component response regulator [Bacillus mycoides DSM 2048] gi|229136171|ref|ZP_04264924.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|229170061|ref|ZP_04297752.1| Two-component response regulator [Bacillus cereus AH621] gi|228613408|gb|EEK70542.1| Two-component response regulator [Bacillus cereus AH621] gi|228647330|gb|EEL03412.1| Two-component response regulator [Bacillus cereus BDRD-ST196] gi|228746871|gb|EEL96756.1| Two-component response regulator [Bacillus mycoides DSM 2048] Length = 189 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 4/108 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY++ S LA+ + G + I+ EL L++RE L LA Sbjct: 86 GVHGYLLKDSPSEDLASAIRNVMKGK--REISQ--ELMFGLWQEQNPLSDREKEVLVLAK 141 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KL+A NRI+AI A G+I Sbjct: 142 EGKTTNEIAKMLYLSPGTVRNYISEVLAKLEAKNRIEAITIAEEKGWI 189 >gi|291295193|ref|YP_003506591.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470152|gb|ADD27571.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 216 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 48/115 (41%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERE 178 GY++ ++ L + G Q+I DF + A L+ERE Sbjct: 96 AGARGYMLKDADAKELLEAIRRVYQGEVLLDAEMAEQIIQDFKAKQETTPKAHAELSERE 155 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L GYT+ EIA +L LS TV L KL NR QA A+R G Sbjct: 156 VQILRLVAQGYTNLEIAAELSLSEKTVRNRLSDIFQKLHLNNRTQAALYALREGL 210 >gi|313106105|ref|ZP_07792362.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310878864|gb|EFQ37458.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 243 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 74/229 (32%), Gaps = 5/229 (2%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS-GDIPNIL 68 + + F + S P +LI EL D Sbjct: 14 RLRKAATTEAVCREMVEFAARLGFDRVIVCSLFPRPGEDELIDELFFVHGDWAEGRSAQE 73 Query: 69 IETY--GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + Y H P W E VR L G+ PV Sbjct: 74 RDAYLLHCPVTRHILELDEPFFWSK-SPSEDPERMTYRIVRGVRDLGQVNGMQVPVFGRN 132 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLA 185 G V F E L L + A C + L S+ A+ L+ERE LQ Sbjct: 133 GLEGAVSFAGERLDLNAGCKLAAQAFCPILFFALKRLRGPVSAGDAQALSEREREVLQWI 192 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G E+A L +S TV +L +A +L A + QA+A+A+R G I Sbjct: 193 ALGKQQAEVAAILMISERTVENHLRAARRRLGAASTAQAVARALRLGDI 241 >gi|108805421|ref|YP_645358.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766664|gb|ABG05546.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 232 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA--ARNL 174 L GYV+ +S + + + G ++I D + A L Sbjct: 103 LKAGAAGYVLKSSPLPRVISALRRLLSGESPLNQELAARLIQDLARRPGGGGNPPPAEEL 162 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G T+ EIA +L +S T +++ + KL +R QA+A+A G I Sbjct: 163 TAREREVLVLMARGRTNPEIARELVISRGTAKSHVQNIIRKLGVSDRTQAVARAFELGLI 222 >gi|254486014|ref|ZP_05099219.1| transcription regulator, LuxR family, putative [Roseobacter sp. GAI101] gi|214042883|gb|EEB83521.1| transcription regulator, LuxR family, putative [Roseobacter sp. GAI101] Length = 248 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 67/183 (36%), Gaps = 13/183 (7%) Query: 63 DIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQE--ETVIESSGQLSVRLEGGLL 113 +P E+Y + S P W Q+ + L E G+ Sbjct: 60 GMPTAFKESYIKEQLYLDNPLPRLAMSRPDPFYWSDAQDLDDLQPAEIAYLDKLKEAGIW 119 Query: 114 PFAGIAFPVRLGFHKNGYV--IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 P GIAF V +N V F L+ + ++E A F L S Sbjct: 120 P--GIAFQVFGPESRNAAVGMCFEPGAPRLSPDALLELQLASQCAHQRFCALTDGPKSPY 177 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L+ G ++ +A+ +G+S HTV+ KL+ +R +A + I Sbjct: 178 ARLSPRELEVLRWIAQGKSNSVMADIMGISRHTVDTITRRMFEKLEVTDRTRAAVRGISA 237 Query: 232 GYI 234 G + Sbjct: 238 GLL 240 >gi|297563570|ref|YP_003682544.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848018|gb|ADH70038.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 219 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLEL--FKKRSSAARNL 174 L +G+++ + L + + + GA Q++ + ++A L Sbjct: 99 LRAGASGFLLKDAPPAQLLHGIRTVSTGAALLDPEVTRQLVGRYAARIRPPDAAAADARL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L +G ++ EIA L +S TV ++ KLD +R+QA+ A R G + Sbjct: 159 TPRELEVLRLIANGLSNGEIAASLFISQETVKTFVSRILTKLDLRDRVQAVVYAYRQGLV 218 Query: 235 C 235 Sbjct: 219 T 219 >gi|50955380|ref|YP_062668.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951862|gb|AAT89563.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 207 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ S + L + G L + + +LT RE L Sbjct: 95 LDAGASGYLLKDSTPVELFAAIRTARDGGSALSPAVASRLMDRMRAPQESLTPREIEVLA 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T+ ++ E+L +S TV ++ KL R A+++A++ G I Sbjct: 155 LLATGRTNRQVGERLFVSETTVKTHVNHIFTKLGVDTRAAAVSRAMKEGLI 205 >gi|332202293|gb|EGJ16362.1| response regulator [Streptococcus pneumoniae GA41317] Length = 210 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + LT R Sbjct: 90 MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|311900005|dbj|BAJ32413.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 223 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--------KKRSSAAR 172 L +G+++ L + + A GA V L+++ + A Sbjct: 97 LRAGASGFLLKDVPAEELVQAIRVVADGAAMLAPSVTRRLLDMYATKLPSGDEAPPQALT 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L +S TV ++G KL +R+QA A G Sbjct: 157 VLTEREVEVLRLVARGLSNAEIAAELFVSETTVKTHVGHVLTKLQLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|295696562|ref|YP_003589800.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295412164|gb|ADG06656.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 220 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 6/114 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA---RNLTERET 179 NGY++ + L + + A G + + K ++ LT RE Sbjct: 97 AGANGYLLKNVDPDELISSIQKVAAGEAVIPGLLAARIVAELHKEATPEDVLEPLTSREL 156 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G ++ EIA++L +S HTV ++ + KL NR+QA A AIR G Sbjct: 157 EVLGYLSTGASNREIAKQLFISEHTVRNHIQNILGKLHLTNRVQAAAYAIRQGI 210 >gi|226310381|ref|YP_002770275.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093329|dbj|BAH41771.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 199 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 4/110 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L NGY++ S LA+ + G EL + LTERE L Sbjct: 92 LKAGANGYLLKDSPSEELASSIRSIMAGRRIYA----PELVDEAYGQENPLTEREKEVLL 147 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L DG ++EIA +L ++ TV Y+ KL NRI+AI + G+ Sbjct: 148 LVADGKNTKEIASQLYITTGTVRNYISVILDKLGVSNRIEAIMHSKEKGW 197 >gi|148994461|ref|ZP_01823662.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|168488084|ref|ZP_02712283.1| response regulator [Streptococcus pneumoniae SP195] gi|168490693|ref|ZP_02714836.1| response regulator [Streptococcus pneumoniae CDC0288-04] gi|168494570|ref|ZP_02718713.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|225860419|ref|YP_002741928.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|147927210|gb|EDK78245.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|183572895|gb|EDT93423.1| response regulator [Streptococcus pneumoniae SP195] gi|183575039|gb|EDT95567.1| response regulator [Streptococcus pneumoniae CDC0288-04] gi|183575541|gb|EDT96069.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|225726539|gb|ACO22390.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|332075238|gb|EGI85708.1| response regulator [Streptococcus pneumoniae GA17570] Length = 210 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + LT R Sbjct: 90 MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|269793700|ref|YP_003313155.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269095885|gb|ACZ20321.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 226 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 18/129 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR------------- 167 L +G+++ ++ LA+ + A G +V+ L+LF Sbjct: 94 LRAGASGFLLKSARPEELADAIRTIASGSSVVAPRVVRRMLDLFAPHLPGGDDASPARPD 153 Query: 168 --SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + R+LT RET L+ +G ++ EIAE+L LS TV ++G+ KL +R+QA+ Sbjct: 154 EVAPVLRDLTPRETDVLRAVAEGLSNAEIAEQLVLSTTTVKTHVGNMLAKLGVRDRVQAV 213 Query: 226 AKAIRFGYI 234 A G + Sbjct: 214 ILAYESGLV 222 >gi|309792258|ref|ZP_07686730.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308225799|gb|EFO79555.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 229 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 2/94 (2%) Query: 143 NEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 NE+++ QV++ F ++ + S L+ RE L+L G T++EIA L + Sbjct: 128 NEMVLALPDVAAQVLSAFRQMVIDEDTQSIFSPLSPRELEVLELVAAGRTNKEIALNLDI 187 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV ++ S KL +R QA+ A+R G+I Sbjct: 188 SNQTVKNHVSSILRKLAVNDRTQAVVYAMRRGWI 221 >gi|256396450|ref|YP_003118014.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362676|gb|ACU76173.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 211 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 48/110 (43%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + LA V + A G +L + R AA+ LT RE L L Sbjct: 102 AGATGYLLKDTPRADLAEAVRLAARGETVLAPAVAAKLVSRLRQPAAQPLTPREREVLAL 161 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EI +L +S TV +L A KL +R A+ KA+ G + Sbjct: 162 VARGLANAEIGRELFISEATVKTHLVRAFGKLGVDDRTAAVTKAMAQGLL 211 >gi|293364822|ref|ZP_06611539.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307703071|ref|ZP_07640018.1| response regulator [Streptococcus oralis ATCC 35037] gi|291316272|gb|EFE56708.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307623464|gb|EFO02454.1| response regulator [Streptococcus oralis ATCC 35037] Length = 210 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + + A G A Q ++ +E + LT R Sbjct: 90 MPV-LNAGAKGYMLKTSSADELLHALRKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|222151857|ref|YP_002561017.1| two-component response regulator VraR [Macrococcus caseolyticus JCSC5402] gi|222120986|dbj|BAH18321.1| two-component response regulator VraR [Macrococcus caseolyticus JCSC5402] Length = 207 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETS 180 L + Y++ TS + + +I G +V+ +++ LTERE Sbjct: 93 LDAGVDSYILKTSSAEEIRDAIIKTYQGESVFEKEVMMKMRARMNQKAELHDMLTEREKE 152 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA+ +++ TV ++ + KL+ +R QA+ A + I Sbjct: 153 ILLLIAKGYSNQEIADASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDLI 206 >gi|29833213|ref|NP_827847.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29610335|dbj|BAC74382.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 223 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF--------KKRSSAAR 172 L +G+++ + L + + A G + L+ + + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYAGHLPSGDEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|88859162|ref|ZP_01133803.1| LuxR, transcriptional regulator [Pseudoalteromonas tunicata D2] gi|88819388|gb|EAR29202.1| LuxR, transcriptional regulator [Pseudoalteromonas tunicata D2] Length = 233 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 57/232 (24%), Positives = 104/232 (44%), Gaps = 25/232 (10%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +K +SL +L+ ++ I + A+N+A ++ L+ ++ EL L + L Sbjct: 21 EKVNSLSDLNNEVNNIAKFLNAKNYAFCVFSTNLNEQESVKIYGELGR-ALSRLIQDDNL 79 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQ---EETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 I TY + + P+ I E S+ + ++PF G + Sbjct: 80 IRTY-------CQTEVKPLKLSEITNFFELKDSRKQKGFSIFCDTLIIPFKGTLY----- 127 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK---RSSAARNLTERETSCL 182 G +I +E N+++ E H ++ + FK+ +S+ N T+RE CL Sbjct: 128 --DFGCLILRTE----NNKLLKEEHFKSIVIVIYMYDAFKRCKKKSNKTVNFTKREIECL 181 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + A +G TS EI++ L ++ TVN ++ + K ++ NR QAIAK G + Sbjct: 182 KWATEGKTSWEISKILTITDRTVNYHIANCIRKTNSSNRQQAIAKFYAMGIL 233 >gi|312196323|ref|YP_004016384.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227659|gb|ADP80514.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 221 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNL-- 174 L +G+++ L V + A G ++I D + R + AR L Sbjct: 96 LRAGASGFLLKDVRRDELVRAVRLVAAGESLLAPSVTRRLIADVVGRGAARPALARRLDE 155 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE+ L+L G G ++ EIA L +S HTV +++ S KL +R QA+ A G Sbjct: 156 LTERESETLRLLGRGLSNSEIAATLVVSEHTVKSHVSSVLTKLGLRDRAQAVVFAYESGL 215 Query: 234 IC 235 I Sbjct: 216 IV 217 >gi|302535348|ref|ZP_07287690.1| two-component system regulator [Streptomyces sp. C] gi|302444243|gb|EFL16059.1| two-component system regulator [Streptomyces sp. C] Length = 223 Score = 108 bits (271), Expect = 5e-22, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 55/121 (45%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSA---ARN 173 L +G+++ + LA V + A G ++IT+F L R+ + Sbjct: 98 LRAGASGFLLKDASADQLAEAVRVVAAGEALLSPNITKRLITEFSRLGAPRAPSRARIEE 157 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L L G ++ EIA L ++ TV ++G VKL +R QA A G Sbjct: 158 LTERETEVLSLIAQGLSNGEIATHLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYETGL 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|289550400|ref|YP_003471304.1| Two component transcriptional regulator VraR [Staphylococcus lugdunensis HKU09-01] gi|315660134|ref|ZP_07912991.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|289179932|gb|ADC87177.1| Two component transcriptional regulator VraR [Staphylococcus lugdunensis HKU09-01] gi|315494815|gb|EFU83153.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 209 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A V HG +V+ KKR+ LTERE Sbjct: 95 LDAGVDSYILKTTSAKDIAEAVRKTYHGESVFEPEVLVKMRNRMKKRAELYEMLTEREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|15900310|ref|NP_344914.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|15902388|ref|NP_357938.1| DNA-binding response regulator [Streptococcus pneumoniae R6] gi|111657155|ref|ZP_01407935.1| hypothetical protein SpneT_02001620 [Streptococcus pneumoniae TIGR4] gi|116517140|ref|YP_815865.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|148988147|ref|ZP_01819610.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|148996798|ref|ZP_01824516.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|149006139|ref|ZP_01829868.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|149012131|ref|ZP_01833240.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|168485529|ref|ZP_02710037.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|168576782|ref|ZP_02722640.1| response regulator [Streptococcus pneumoniae MLV-016] gi|182683352|ref|YP_001835099.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|221231258|ref|YP_002510410.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225856124|ref|YP_002737635.1| response regulator [Streptococcus pneumoniae P1031] gi|225858242|ref|YP_002739752.1| response regulator [Streptococcus pneumoniae 70585] gi|298231095|ref|ZP_06964776.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254642|ref|ZP_06978228.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502187|ref|YP_003724127.1| LuxR family response regulator [Streptococcus pneumoniae TCH8431/19A] gi|303255739|ref|ZP_07341782.1| response regulator protein [Streptococcus pneumoniae BS455] gi|303259462|ref|ZP_07345439.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|303262993|ref|ZP_07348927.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|303267350|ref|ZP_07353209.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|303269845|ref|ZP_07355590.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|307067043|ref|YP_003876009.1| CheY-like receiver/HTH DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|307126599|ref|YP_003878630.1| response regulator [Streptococcus pneumoniae 670-6B] gi|5830527|emb|CAB54571.1| response regulator [Streptococcus pneumoniae] gi|14971857|gb|AAK74554.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|15457902|gb|AAK99148.1| Response regulator [Streptococcus pneumoniae R6] gi|116077716|gb|ABJ55436.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|147757373|gb|EDK64412.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|147762495|gb|EDK69456.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147763733|gb|EDK70667.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147926611|gb|EDK77684.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|182628686|gb|ACB89634.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|183571158|gb|EDT91686.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|183577579|gb|EDT98107.1| response regulator [Streptococcus pneumoniae MLV-016] gi|220673718|emb|CAR68214.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|225722011|gb|ACO17865.1| response regulator [Streptococcus pneumoniae 70585] gi|225724954|gb|ACO20806.1| response regulator [Streptococcus pneumoniae P1031] gi|298237782|gb|ADI68913.1| LuxR family response regulator [Streptococcus pneumoniae TCH8431/19A] gi|301793635|emb|CBW36018.1| response regulator protein [Streptococcus pneumoniae INV104] gi|301801302|emb|CBW33982.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302597299|gb|EFL64402.1| response regulator protein [Streptococcus pneumoniae BS455] gi|302635884|gb|EFL66385.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|302639396|gb|EFL69854.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|302640613|gb|EFL71015.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|302643121|gb|EFL73409.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|306408580|gb|ADM84007.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Streptococcus pneumoniae AP200] gi|306483661|gb|ADM90530.1| response regulator [Streptococcus pneumoniae 670-6B] gi|332076827|gb|EGI87289.1| response regulator [Streptococcus pneumoniae GA17545] gi|332077675|gb|EGI88136.1| response regulator [Streptococcus pneumoniae GA41301] Length = 210 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + LT R Sbjct: 90 MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|325520628|gb|EGC99691.1| LuxR family transcriptional regulator [Burkholderia sp. TJI49] Length = 109 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + +++ F+ + K A LT RE L +G T+ EI + L +S TVN Sbjct: 21 WLANLSHSLMSRFM-VPKLSPEARVALTAREREVLCWTAEGKTACEIGQILSISERTVNF 79 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL A N++QA+ KAI G I Sbjct: 80 HVNNILEKLGATNKVQAVVKAISAGLI 106 >gi|295690124|ref|YP_003593817.1| LuxR family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295432027|gb|ADG11199.1| two component transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 201 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ +LA V A G + + E + LT+RE L+ Sbjct: 94 LDAGVKGYLLKDGPSSVLAAAVRTVAAGG-RAIAPELSEAI--WDAEPDPLTDREREILR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA +G ++++IAE L LS TV YL A KL A NR++A A G++ Sbjct: 151 LAEEGRSNKDIAEVLELSPGTVRNYLSEAAQKLGAANRVEAGRIARSNGWL 201 >gi|188586933|ref|YP_001918478.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351620|gb|ACB85890.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 228 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 14/122 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELF-------KKRSSAAR 172 G+++ E L + G + +++ +F L K + Sbjct: 105 GAAGFLLKDVETPTLVQAIQEVNKGNSFIHPTITHKLLGEFNRLAQNSPRNIKSDEAVQS 164 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L GYT++EI+++L +S TV ++ + K+D +R QA+ A++ G Sbjct: 165 ELTGREKEILELMAQGYTNKEISKELYISEKTVKNHVSNILRKMDVTDRTQAVITALKCG 224 Query: 233 YI 234 + Sbjct: 225 VV 226 >gi|15965591|ref|NP_385944.1| putative transcription regulator HSL-dependent protein [Sinorhizobium meliloti 1021] gi|307302711|ref|ZP_07582467.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318559|ref|ZP_07597993.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15074772|emb|CAC46417.1| Quorum sensing system, AHL autoinducer-binding, luxR family, regulator of sinI [Sinorhizobium meliloti 1021] gi|306895899|gb|EFN26651.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306903075|gb|EFN33666.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 245 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 63/169 (37%), Gaps = 10/169 (5%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D L G+ P+ W + + L E L G+A P+ + + Sbjct: 76 DPILKLALGGVRPVEWATARRR--FPECEPLFEAAEEIGLSTEGVALPLPSPAGRMALLA 133 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--------NLTERETSCLQLA 185 + + H +Q+ + SA LT RET L + Sbjct: 134 IGANMSPVEWSAYRRCHLRDFQLAANLFHASMLEHSAMAGALDERDLRLTGRETEVLTWS 193 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA LG+S TV ++ +A KL+ V+ QA+A A+R I Sbjct: 194 AAGKSYWEIATILGISERTVRFFMTNARRKLNVVSNTQAVAHAVRHALI 242 >gi|239932265|ref|ZP_04689218.1| two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440629|ref|ZP_06580019.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343524|gb|EFE70480.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 223 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF--------KKRSSAAR 172 L +G+++ + L + + A G + L+ + + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGDEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|332707622|ref|ZP_08427652.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332353630|gb|EGJ33140.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 216 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 7/109 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTERET 179 GY++ + LA + G +V + LT RE Sbjct: 98 GAAGYLLKDTPPEELAQSIRAVQKGYTQLGPGIGRKVAAQMRDPTPSPPPGWDELTPREQ 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+L G ++ EIA+ L +S TV ++ +L+ +R QA A Sbjct: 158 EILRLIATGASNREIAQTLYISEKTVKNHVTHILSRLNVRDRTQAAILA 206 >gi|297161877|gb|ADI11589.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 223 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF--------KKRSSAAR 172 L +G+++ + L + + A G + L+ + + Sbjct: 97 LRAGASGFLLKDAPAHELVQAIRVVAAGEAMLAPSITRRLLDKYAGHLPSGEEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVAKGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|19554120|ref|NP_602122.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62391773|ref|YP_227175.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21325708|dbj|BAC00329.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41327115|emb|CAF20959.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 212 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 43/109 (39%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G L + + +LT RE L+L Sbjct: 104 AGALGYLLKDAPPSELLAAVRSAAEGDSTLSPMVANRLMTRVRTPKTSLTPRELEVLKLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +I L LS TV ++L KL +R A+A A G + Sbjct: 164 AGGSSNRDIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGLL 212 >gi|302545152|ref|ZP_07297494.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462770|gb|EFL25863.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 201 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L H G+++ S L + + A G +VI L L + LT RE L+ Sbjct: 94 LAAHVAGFLLKDSSPATLCDAIRAVARGE--RVIDPQLALA-ALDDGPQPLTPRELEVLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A +G + IA +L LSV TV YL SA KLDA NR+ AI A G++ Sbjct: 151 MASEGEEAARIAARLFLSVGTVRNYLTSAVTKLDARNRVDAIRIAREAGWL 201 >gi|271501434|ref|YP_003334459.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586] gi|270344989|gb|ACZ77754.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586] Length = 250 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 15/176 (8%) Query: 72 YGDDFLFHF-NSGLLPIIWQSIQEET-----VIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 Y D + HF P +W + + ++ Q G P+ L Sbjct: 75 YQVDPVQHFALESCAPFVWSYQRPDRSALHGRLDEHAQEVTHYMRDNNMPCGATVPLHLP 134 Query: 126 FHKNGYVIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERE 178 G+V T +E + + ++ LF R+ L+ RE Sbjct: 135 NG--GFVTLTGIVTDQREERDISETLAQLTFLAHRFQESAFPLFDASMLTCRHVKLSNRE 192 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL + +G T++EIA KL SV TV +L +A KL A NR+QA+ +A+ + + Sbjct: 193 RECLAWSAEGLTAKEIARKLHRSVATVTLHLNTAAKKLGATNRVQAVVRALHYRLL 248 >gi|332204409|gb|EGJ18474.1| response regulator [Streptococcus pneumoniae GA47901] Length = 210 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY+I TS L + V A G A Q ++ +E + LT R Sbjct: 90 MPV-LDAGAKGYMIKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|149003489|ref|ZP_01828363.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|169833867|ref|YP_001693899.1| response regulator [Streptococcus pneumoniae Hungary19A-6] gi|194398711|ref|YP_002037067.1| response regulator [Streptococcus pneumoniae G54] gi|225853962|ref|YP_002735474.1| response regulator [Streptococcus pneumoniae JJA] gi|237649348|ref|ZP_04523600.1| response regulator [Streptococcus pneumoniae CCRI 1974] gi|237821532|ref|ZP_04597377.1| response regulator [Streptococcus pneumoniae CCRI 1974M2] gi|147758425|gb|EDK65424.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|168996369|gb|ACA36981.1| response regulator [Streptococcus pneumoniae Hungary19A-6] gi|194358378|gb|ACF56826.1| response regulator TCS03 [Streptococcus pneumoniae G54] gi|225723015|gb|ACO18868.1| response regulator [Streptococcus pneumoniae JJA] Length = 210 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + LT R Sbjct: 90 MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|37223196|gb|AAQ90192.1| LuxR [Vibrio cholerae] Length = 214 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 6/175 (3%) Query: 34 ALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 Y + + I L N + + D + + NS PI W + Sbjct: 41 EYYLLAIIYPHSMVKSDISILDNSPKKWREYYDDANLIKYDPIVDYSNSNHSPINWNIFE 100 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT-SEFLMLANEVIIEAHGA 152 V + S + ++ G +FP+ + G + F SE + + + A Sbjct: 101 NNAVNKKSPNV-IKEAKTSGLITGFSFPIHTANNGFGMLSFAHSEKDNYIDSLFLHACMN 159 Query: 153 CYQVITDFLELFKK----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 ++ ++ ++K + + +LT+RE CL +G TS +I + LG S Sbjct: 160 IPLIVPSLVDNYRKINIANNKSNTDLTKREKECLAWPCEGKTSWDIPKILGCSER 214 >gi|197263477|ref|ZP_03163551.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241732|gb|EDY24352.1| regulatory protein SdiA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 240 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 79/236 (33%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ ++ +++ L R++ F Y + P + I P Sbjct: 15 LRFQEMAAAEDVYTELQYQTQRLE---FDYYALCVRHPVPFTRPKI-------SLRTTYP 64 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y + F + L P + + V+ Q G+ V Sbjct: 65 QAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFHEAQAMWDAAQRFGLRRGVTQCVM 124 Query: 124 LGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L G++ + L + +EV + + ++ A ++RE Sbjct: 125 LPNRALGFLSVSRSSLRCSSFTYDEVELRLQLLARESLSALTRFEDDMVMAPEMRFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K + N+ Q A G I Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNPPNKTQIACYAAATGLI 240 >gi|149018085|ref|ZP_01834544.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|168482621|ref|ZP_02707573.1| response regulator [Streptococcus pneumoniae CDC1873-00] gi|147931649|gb|EDK82627.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|172043787|gb|EDT51833.1| response regulator [Streptococcus pneumoniae CDC1873-00] gi|332203553|gb|EGJ17620.1| response regulator [Streptococcus pneumoniae GA47368] Length = 210 Score = 108 bits (270), Expect = 6e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + LT R Sbjct: 90 LPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|258510526|ref|YP_003183960.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477252|gb|ACV57571.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 231 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 51/117 (43%), Gaps = 10/117 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKR---SSAARNLTE 176 +GYV+ + L V G ++I +F + R S + LTE Sbjct: 105 GASGYVLKSVSPERLIECVRQVYEGEPVVPSSLAMKMIAEFSRTAETRMPSSESVTELTE 164 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE LQ G +++EIA L +S +TV ++ KL NR QA A A+R G Sbjct: 165 REREVLQYLSAGASNKEIARALFISENTVRNHVRHILDKLHLSNRAQAAAYAVRNGI 221 >gi|160882054|ref|YP_001561022.1| two component LuxR family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160430720|gb|ABX44283.1| two component transcriptional regulator, LuxR family [Clostridium phytofermentans ISDg] Length = 213 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 4/112 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSCL 182 NGYV+ SE +L + G Y + EL ++ S + + LT RE L Sbjct: 99 GVNGYVLKDSESSVLKKAIYTIYQGETYIEPSLTPELKERMQSPSSSNTEILTRREIDVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +G ++EIA +L +S TV ++ + K+ +R QA AI+ ++ Sbjct: 159 KLLAEGLFNKEIAYRLSISEKTVKNHVSNIFKKISVSDRTQAAVYAIKNNFV 210 >gi|291299414|ref|YP_003510692.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568634|gb|ADD41599.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---N 173 L +G+++ L + V + A G ++I +F++ + R A + Sbjct: 98 LRAGASGFLLKDVTAERLFDAVRVVAAGEALLAPTVTRRLIGEFVQSKQPRPVADARLAS 157 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L+L +G ++ E+A +L +S TV ++ KL +R QA+ A G Sbjct: 158 LTPRETEVLRLVAEGLSNPELAARLTVSEETVKTHVSRVLHKLGLRDRTQAVVAAYESGL 217 Query: 234 IC 235 + Sbjct: 218 VV 219 >gi|326391343|ref|ZP_08212882.1| transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] gi|325992606|gb|EGD51059.1| transcriptional regulator, LuxR family [Thermoanaerobacter ethanolicus JW 200] Length = 257 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 67/118 (56%), Gaps = 1/118 (0%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTE 176 IA P+ + GY+ ++ + +E+++ Y++++D++ +F ++ +R L E Sbjct: 139 IAIPLIIDDEIIGYLDLSTIKDSMVDEMVVIVELLAYKIVSDYIRMFGNKAKNSRVKLKE 198 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L+L GY IA++LG+S++TVN + + KLD + +AIAKAIR G I Sbjct: 199 EQLKVLKLVTKGYKDIVIAKELGISINTVNYHKRNIFKKLDVRSTREAIAKAIRMGLI 256 >gi|194017154|ref|ZP_03055766.1| response regulator [Bacillus pumilus ATCC 7061] gi|194011022|gb|EDW20592.1| response regulator [Bacillus pumilus ATCC 7061] Length = 199 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 4/110 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ S LA+ + G EL + S LTERE S L+ Sbjct: 92 LKAGVSGYMLKDSPSEDLASAIRSVMKGKKVYA----PELMEDLYSDENPLTEREKSVLE 147 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L DG ++EIA++L + TV Y+ KL+ NRI+AI ++ G+ Sbjct: 148 LVADGKNTKEIAKELSIKSGTVRNYISIILDKLEVKNRIEAITRSKEKGW 197 >gi|297195362|ref|ZP_06912760.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719268|gb|EDY63176.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELF----KKRSSAAR 172 L +G+++ + L + + A G +++ + + + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYADHLPSGEEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|228942499|ref|ZP_04105035.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975433|ref|ZP_04135988.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982066|ref|ZP_04142358.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228777604|gb|EEM25879.1| Two-component response regulator [Bacillus thuringiensis Bt407] gi|228784227|gb|EEM32251.1| Two-component response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817182|gb|EEM63271.1| Two-component response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 189 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G +V D + + L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REVSQDLMFGLWQEQ---NPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 141 KEGKTANEIAKVLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 188 >gi|326440245|ref|ZP_08214979.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 224 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF--------KKRSSAAR 172 L +G+++ + L + + A G + L+ + + Sbjct: 97 LRAGASGFLLKDAPAHELVQAIRVVAAGEAMLAPSITRRLLDKYAGHLPSGEEPVPDTLN 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 SLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|239978584|ref|ZP_04701108.1| two-component response regulator [Streptomyces albus J1074] gi|291450480|ref|ZP_06589870.1| two-component system response regulator [Streptomyces albus J1074] gi|291353429|gb|EFE80331.1| two-component system response regulator [Streptomyces albus J1074] Length = 225 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELF----KKRSSAAR 172 L +G+++ + L + + A G +++ + E + Sbjct: 97 LRAGASGFLLKDAPAHELVQAIRVVASGEAMLAPSVTRRLLDKYAEHLPSGDEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLNKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|228911192|ref|ZP_04074997.1| Two-component response regulator [Bacillus thuringiensis IBL 200] gi|228848368|gb|EEM93217.1| Two-component response regulator [Bacillus thuringiensis IBL 200] Length = 189 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G EL L++RE L LA Sbjct: 85 AGVHGYLLKDSPSEDLAAAIRNVMKGKR----EVSQELMFGLWQEQNPLSDREKEVLLLA 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G++ Sbjct: 141 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGWV 189 >gi|156741340|ref|YP_001431469.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232668|gb|ABU57451.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 230 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--------RSSAARNLT 175 L GY++ + + V G + L+ ++ ++ LT Sbjct: 106 LRAGVAGYLLKDASRREIIGAVRQVLRGEAFLNPDLVLQTLRRLAHATPTDDATPIEPLT 165 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G T+ EIA +L +S TV ++ KL +R QA +A+ G + Sbjct: 166 PREQQVLRLLMQGKTNREIARELIISPGTVKVHVEHIIAKLGVSDRTQAAVRALELGLV 224 >gi|172058475|ref|YP_001814935.1| two component LuxR family transcriptional regulator [Exiguobacterium sibiricum 255-15] gi|171990996|gb|ACB61918.1| two component transcriptional regulator, LuxR family [Exiguobacterium sibiricum 255-15] Length = 231 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 20/132 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 LG GY++ L N + Y ++ ++ L K + + + Sbjct: 98 LGAGAVGYLLKEMATDELVNAIRSVYREGGYVHPKVTPNLLQEYRRLMKMKQTMSSQPIE 157 Query: 174 ----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQL DG+++ I++ L +S TV ++ S K++ +R Sbjct: 158 KRVAEAPLHVLTRRECEVLQLLADGFSNRAISDTLFISEKTVKNHVSSILRKMNVPDRTG 217 Query: 224 AIAKAIRFGYIC 235 A+ +AIR G++ Sbjct: 218 AVVEAIRRGWVV 229 >gi|7385146|gb|AAF61717.1|AF232768_2 acylhomoserine lactone dependent transcriptional activator [Pseudomonas fluorescens] Length = 242 Score = 108 bits (270), Expect = 7e-22, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 57/189 (30%), Gaps = 17/189 (8%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P ++ Y D + H P W + E S +L R Sbjct: 55 SNYPARWLKAYKNANYHLIDPIIHHGLKSCAPFSWSDALQAAPCERSREL-FRRSSQYRI 113 Query: 115 FAGIAFPVRLGFHKNGYVIFT-----SEFLMLANEVIIEAHGACYQVITDFLELFKKRS- 168 G F + + +EF + A + L L Sbjct: 114 CTGATFTLHDAGGMFSSLSLCNSGPQAEFERRMADQQGHLQMALIRFHGRLLSLRAMDEL 173 Query: 169 ---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE L+ G EIA +S TV ++ + + KL N QA+ Sbjct: 174 FPEPQTGPLSARELGVLKWVMMGKAYREIAVICAISERTVKFHMSNISGKLQVCNAKQAV 233 Query: 226 AKAIRFGYI 234 +A R G + Sbjct: 234 YEAQRQGIL 242 >gi|312128700|ref|YP_003993574.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor hydrothermalis 108] gi|311778719|gb|ADQ08205.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor hydrothermalis 108] Length = 211 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 7/111 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L F +GY++ +S+ + N ++ G + K+ +NLTE Sbjct: 95 LSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKEIALYISDVLKRTSKQLLEKTQNLTE 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RE +L GY+++EIA L +S TV Y+ S KL+ NR Q Sbjct: 155 RELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205 >gi|290961675|ref|YP_003492857.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260651201|emb|CBG74322.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELF----KKRSSAAR 172 L +G+++ + L + + A G +++ + E ++ Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAGGEAMLAPSITRRLLDKYAEHLPSGDEQVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|222530583|ref|YP_002574465.1| LuxR family two component transcriptional regulator [Caldicellulosiruptor bescii DSM 6725] gi|222457430|gb|ACM61692.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor bescii DSM 6725] Length = 211 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 7/111 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L F +GY++ +S+ + N ++ G + K+ +NLTE Sbjct: 95 LSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKEIALYISDVLKRTSKQLLEKTQNLTE 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RE +L GY+++EIA L +S TV Y+ S KL+ NR Q Sbjct: 155 RELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205 >gi|148983791|ref|ZP_01817110.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147923938|gb|EDK75050.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|301799497|emb|CBW32043.1| response regulator protein [Streptococcus pneumoniae OXC141] Length = 210 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + LT R Sbjct: 90 MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQATVYAFQHHLV 205 >gi|188585286|ref|YP_001916831.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349973|gb|ACB84243.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 215 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARN--LTER 177 +GY++ + L + + G +++ D+ K+S +N L++R Sbjct: 96 AGGDGYILKKAADDELISAIRSVYQGEVIVDKTFTKLLIDYYRNPDKQSGTEKNYDLSDR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E LQL GYT++EIAEKL +S+ TV ++ KL R + + A+R I Sbjct: 156 EKEVLQLIALGYTNKEIAEKLYISIKTVETHIARIKEKLGLNRRSELVRYAMRNNIIS 213 >gi|145296944|ref|YP_001139765.1| hypothetical protein cgR_2844 [Corynebacterium glutamicum R] gi|140846864|dbj|BAF55863.1| hypothetical protein [Corynebacterium glutamicum R] Length = 212 Score = 108 bits (269), Expect = 7e-22, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 43/109 (39%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G L + + +LT RE L+L Sbjct: 104 AGALGYLLKDAPPSELLAAVRSAAEGDSTLSPMVANRLMTRVRTPKTSLTPRELEVLKLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +I L LS TV ++L KL +R A+A A G + Sbjct: 164 AGGSSNRDIGRILFLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGLL 212 >gi|157693347|ref|YP_001487809.1| response regulator [Bacillus pumilus SAFR-032] gi|157682105|gb|ABV63249.1| response regulator [Bacillus pumilus SAFR-032] Length = 199 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 4/110 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ S LA+ + G EL + S LTERE S L+ Sbjct: 92 LKAGVSGYMLKDSPSEDLASAIRSVMKGKKVYA----PELMEDLYSDENPLTEREKSVLE 147 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L DG ++EIA++L + TV Y+ KL+ NRI+AI ++ G+ Sbjct: 148 LVADGKNTKEIAKELSIKSGTVRNYISIILDKLEVKNRIEAITRSKEKGW 197 >gi|89068113|ref|ZP_01155530.1| autoinducer-binding transcriptional regulator LuxR [Oceanicola granulosus HTCC2516] gi|89046352|gb|EAR52409.1| autoinducer-binding transcriptional regulator LuxR [Oceanicola granulosus HTCC2516] Length = 228 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 8/168 (4%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + P+ W+ + + + L+ G+ G + P+R + Sbjct: 44 DPVVIDGFRRFDPVDWKELDWSGKAARAYRRDA-LDHGVGS-QGFSIPLRGPNGQFALFS 101 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTERETSCLQLAGD 187 T A A ++ +L + +R+L+ RE L Sbjct: 102 VTDTTSDAAWAEFTAARQPDLILVGHYLNRKALELAGPTLPAPSRSLSPREIEALTYLAQ 161 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 GY +A+ L +S HT+ AY+ SA KL A N A+A+A G I Sbjct: 162 GYGRGRVADVLSISEHTLRAYIESARFKLGAANTTHAVARAAMEGLIV 209 >gi|311030273|ref|ZP_07708363.1| two-component response regulator DesR [Bacillus sp. m3-13] gi|311032980|ref|ZP_07711070.1| two-component response regulator DesR [Bacillus sp. m3-13] Length = 199 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 4/110 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ S LAN + G EL LTERE + L+ Sbjct: 92 LKAGVTGYLLKDSPSEDLANSIRSIMSGRRVYA----PELMDDFYGEENPLTEREKAVLE 147 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L DG ++EIA++L + TV Y+ + KL+ NRI+AI ++ G+ Sbjct: 148 LVADGKNTQEIADELRIKSGTVRNYISNILDKLEVKNRIEAITQSKEKGW 197 >gi|291616969|ref|YP_003519711.1| SdiA [Pantoea ananatis LMG 20103] gi|291151999|gb|ADD76583.1| SdiA [Pantoea ananatis LMG 20103] gi|327393397|dbj|BAK10819.1| cell division activating regulatory protein SdiA [Pantoea ananatis AJ13355] Length = 240 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 39/224 (17%), Positives = 77/224 (34%), Gaps = 24/224 (10%) Query: 23 LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY-------GDD 75 L+Q+ I++ F + P + + P + I+ Y D Sbjct: 29 LLQDYIQSLGFDYFAFFIQHRVPFTRPRV-------YLHDTYPKLWIKRYKEQNYYAIDP 81 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 L + ++ + SS + + +G + G + Sbjct: 82 VLQLCLRSG-----KGVEWTPELFSSAKEMWQDACNFGLLSGFSCSAMASNRAVGILSIG 136 Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYT 190 S+ + +E + + L L ++ + A + ++RE L+ +G T Sbjct: 137 SKRPFITGSRRVELEVKLHFLAEQSLSLLERLNDEALMVQGNDFSQRELEILRWTAEGKT 196 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S+EI+ L +S HTVN Y + + + N+ Q A G I Sbjct: 197 SQEISLILSISEHTVNFYQKNMKKRFNVSNKTQIACYAAAIGLI 240 >gi|319653107|ref|ZP_08007209.1| hypothetical protein HMPREF1013_03824 [Bacillus sp. 2_A_57_CT2] gi|317395028|gb|EFV75764.1| hypothetical protein HMPREF1013_03824 [Bacillus sp. 2_A_57_CT2] Length = 199 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 4/110 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ S LA+ + G EL LT+RE L+ Sbjct: 92 LKAGVRGYLLKDSPSEELASSIRNVVEGKRIYA----PELMDDVYGEENPLTDREKEVLE 147 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L DG + EIA++L + TV Y+ + KL+ NRI+AI ++ G+ Sbjct: 148 LIADGKNTREIADQLSIKTGTVRNYISAILDKLEVTNRIEAITQSKEKGW 197 >gi|261420477|ref|YP_003254159.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319768147|ref|YP_004133648.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261376934|gb|ACX79677.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317113013|gb|ADU95505.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 391 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 84/226 (37%), Gaps = 25/226 (11%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 R L Q + + A+ +D + Q+L EL + + + + E Sbjct: 181 FSRCALFQ-FVNQESTAIGLHGHGVDNGQIQRLRVELDSIPMLKESVGKLKAEV------ 233 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN-------- 129 H PI V +S Q + + PV + Sbjct: 234 -HEFRHFRPIY--------VPRASEQFPRLYVDPFGLASLVIVPVYVPTEGRMIGGVVLD 284 Query: 130 -GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G F + L ++ A ++ K+ A +L+ RE L+L DG Sbjct: 285 RGPGRFFAVDRRLFPALMKFGQSAGELLLKWIKAPKKEWEGMAESLSPREIEILKLLADG 344 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ E A +L LS TV Y+ SA KL+A NR +A+AKA+R G I Sbjct: 345 ASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAKALRLGLI 390 >gi|227497785|ref|ZP_03927971.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226832785|gb|EEH65168.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 246 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 14/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFK-----------KRSS 169 L G+++ + LA + A G +V LE+F Sbjct: 121 LRAGAAGFLLKDTRPAELAEAIRTVASGEAVVSPRVTRRMLEMFASHLPQDGAQDAAEDP 180 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT RE L L G ++ EIA++L +S TV ++G+ KLD +R+QA+ A Sbjct: 181 RIASLTPREREILVLIAQGMSNSEIADQLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAY 240 Query: 230 RFGYIC 235 G + Sbjct: 241 ETGLMA 246 >gi|226306620|ref|YP_002766580.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|229493687|ref|ZP_04387472.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|226185737|dbj|BAH33841.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|229319648|gb|EEN85484.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 219 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN------- 173 L +G+++ + L + + A G +V L F A R Sbjct: 95 LRAGASGFLLKDTPPEDLVSAIRSVAAGDAVVSPKVTRRLLSRFIVDGPAPRRDPVVLDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G ++ EIA++L LS T+ +++G KLD +R+QA+ A G Sbjct: 155 LTEREREVLGHVATGLSNIEIAQQLYLSESTIKSHVGRILTKLDLRDRVQAVVLAYETGL 214 Query: 234 IC 235 + Sbjct: 215 VT 216 >gi|115523303|ref|YP_780214.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisA53] gi|115517250|gb|ABJ05234.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisA53] Length = 237 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 49/237 (20%), Positives = 82/237 (34%), Gaps = 21/237 (8%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + L I + + + + A P CE N L + ++ Sbjct: 9 AIERANSVADLGRILVDWRNESGVAHLVYHATHVPA-----CEQPNPVLLL-TYDDAWVK 62 Query: 71 TY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 Y D + +LPI W +++ +T + E + G+ P+R Sbjct: 63 RYVERNYFSIDPVVVAGRDAVLPIDWMAVEHDT--PEARHFFAEAESFGVGRHGLTLPIR 120 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTER 177 + T+ ++ + ++ +L R R L+ R Sbjct: 121 GPAAERALFTVTTNATDDHWHRWRFSYMKDFHLLAHYLHDRAMRLAGLRLDHVMRPLSSR 180 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E CL G T +IA +L LS V+ YL +A KLD QAIAKA+R + Sbjct: 181 ERQCLNGLVRGRTPGQIAGELDLSGSAVHGYLRTARRKLDCATVEQAIAKAVRLDLL 237 >gi|303263546|ref|ZP_07349469.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|302647319|gb|EFL77543.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] Length = 211 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + LT R Sbjct: 90 MPV-LDAGAKGYMLKTSSADELLHAVSKVAAGELAIEQEVSKKVEYHRNHMELHEELTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + + Sbjct: 149 ERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQHHLV 205 >gi|261409282|ref|YP_003245523.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329924974|ref|ZP_08279920.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|261285745|gb|ACX67716.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328940263|gb|EGG36593.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 214 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 6/114 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK---KRSSAARNLTERET 179 Y++ TS +A+ + A G QV + + F+ + A +LT+RE Sbjct: 99 AGAFSYLLKTSRASEVADAIRAAARGQSVLESQVASKMMNRFRHPQNEAPAHNDLTDREM 158 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G ++++IA+ L + + TV ++ + KL +R QA A + G Sbjct: 159 EVLRLLAQGKSNQDIADDLIIGIKTVKFHVTNILGKLGVEDRTQAAIYAYKNGL 212 >gi|78048691|ref|YP_364866.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926244|ref|ZP_08187599.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|78037121|emb|CAJ24866.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543331|gb|EGD14759.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 254 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 67/190 (35%), Gaps = 19/190 (10%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLL 113 GD+ ++ E D P +W + + + R Sbjct: 65 GDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYRTDGHCAGVEYVGGQHRQVTRYLCDSG 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTS---------EFLMLANEVIIEAHGACYQVITDFLELF 164 G+ P+ L + F+ L A + +Q L Sbjct: 125 MGTGVTVPLHLPGG--AFATFSGAIDAAAAQAPRLAEAQVLPFLLLAHAFQARAQELLEP 182 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A Sbjct: 183 QERRCHHIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEA 242 Query: 225 IAKAIRFGYI 234 + + + + + Sbjct: 243 VVRGMHYRLL 252 >gi|312623477|ref|YP_004025090.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor kronotskyensis 2002] gi|312203944|gb|ADQ47271.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor kronotskyensis 2002] Length = 211 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 7/111 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ------VITDFLELFKKRS-SAARNLTE 176 L F +GY++ +S+ + N ++ G I+D L+ K+ +NLTE Sbjct: 95 LSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKEIALYISDVLKRTSKQYFEKTQNLTE 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RE +L GY+++EIA L +S TV Y+ S KL+ NR Q Sbjct: 155 RELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205 >gi|320011731|gb|ADW06581.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 223 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELF----KKRSSAAR 172 L +G+++ + + L + + A G +++ + + + A Sbjct: 97 LRAGASGFLLKDAPAVELVQAIRVVAAGEAMLAPSITRRLLDKYADHLPSGEEPVPDALH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLSLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|17228408|ref|NP_484956.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17130259|dbj|BAB72870.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 225 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA--ARNLTERE 178 L + Y I + L N + GA Y Q+ ++ K S+ NL+ RE Sbjct: 110 LSSGADAYCIKGASIERLLNAIAAAVDGATYLDPQIARQVIDHLKPPSAKGNTANLSGRE 169 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G ++ EIAEKL LS +TV ++ KL +R+QA A+R G + Sbjct: 170 LEVLKLMVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVALRSGLV 225 >gi|302561540|ref|ZP_07313882.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302479158|gb|EFL42251.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 223 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF--------KKRSSAAR 172 L +G+++ + L + + A G + L+ + + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGDEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|257792552|ref|YP_003183158.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|325832688|ref|ZP_08165451.1| prevent-host-death family protein [Eggerthella sp. HGA1] gi|257476449|gb|ACV56769.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|325485827|gb|EGC88288.1| prevent-host-death family protein [Eggerthella sp. HGA1] Length = 228 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 14/125 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--------- 171 L +G+++ +E +A+ V + A G + +E F A+ Sbjct: 99 LAAGASGFLLKDAEPDEIASAVRVVAQGDALIEPSITRRLIETFVAARPASLGGAAAVAA 158 Query: 172 --RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R LT+RE L L G+T++EI +L +S TV +L KLDA +R Q + +A Sbjct: 159 GLRTLTDREREILALVARGFTNDEIGSELFISPATVKTHLARIMAKLDAHDRAQLVVRAY 218 Query: 230 RFGYI 234 G + Sbjct: 219 EGGLV 223 >gi|159901290|ref|YP_001547537.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894329|gb|ABX07409.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 208 Score = 108 bits (269), Expect = 8e-22, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 1/113 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCL 182 L GY++ + L + + A G+ + +L S+ +LT RE L Sbjct: 94 LRAGAKGYLLKDASADELVSAIQAVARGSTHLAPDIAAKLVAGVSNPQPESLTPRELEVL 153 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G G ++ EIA +L +++ TV ++ + KL A NR +A++ A+R I Sbjct: 154 HLLGRGRSNGEIALELDIALRTVKVHVQNILGKLGATNRTEAVSIAVRQQLIS 206 >gi|260892920|ref|YP_003239017.1| two component transcriptional regulator, LuxR family [Ammonifex degensii KC4] gi|260865061|gb|ACX52167.1| two component transcriptional regulator, LuxR family [Ammonifex degensii KC4] Length = 213 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSS--AARNLTERE 178 L GYV+ S L ++ A G Y ++ ++ F + S LT RE Sbjct: 96 LEAGAAGYVLKESSADQLIEAIVRAARGEEYLSPRLAGKMVKWFSRAESKRGLCGLTPRE 155 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G ++ EIA +L LS TV +L S K+ +R QA A++ G+ Sbjct: 156 KEILRLLASGLSNREIARRLYLSEKTVKNHLTSIFQKIGVSDRTQAALWAVKHGF 210 >gi|254385060|ref|ZP_05000394.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194343939|gb|EDX24905.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 224 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L +G+++ + L + + A G +++ + + N Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYAGHLPSGEDSVPNTLG 156 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|218515768|ref|ZP_03512608.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 234 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 51/226 (22%), Positives = 86/226 (38%), Gaps = 8/226 (3%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 ++ + + L NFAL I+ A P ++ + + + G L Sbjct: 17 RAINRTDFFRLLKAAAQHYHFDNFALARISEAS-APFGERDVVITNVPERRVGLFIATLR 75 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 E G+ P+ E + S RL + P+ + Sbjct: 76 EALGNVRAKSAQFLATPV------HGRSAEPAAYPSDRLFNEFRSGVFLFIPLFTPEGRR 129 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 ++ + I + ++ E + R LT+RE ++ +G Sbjct: 130 YCLVLSGVREEPDQGEIADMLLDAMRIFDKLYEEILTHEMSGR-LTQREADIVKWTSEGK 188 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 TS EIA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 189 TSAEIAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVS 234 >gi|315645472|ref|ZP_07898596.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315278950|gb|EFU42260.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 200 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 3/108 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 N Y++ S LA + G ++ L + + S LTERE L L Sbjct: 94 AGANAYLLKDSPSEELAASIRSIMAG--RRIYASEL-VDEAYSGEENPLTEREKEVLSLI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA +L ++ TV Y+ KL NRI+AI + G+ Sbjct: 151 ADGKNTKEIATQLFITTGTVRNYISVILDKLGVSNRIEAITRFKEKGW 198 >gi|325919969|ref|ZP_08181953.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325549544|gb|EGD20414.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 254 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 73/190 (38%), Gaps = 19/190 (10%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQSIQEETV-----IESSGQLSVRLEGGLL 113 GD+ ++ E D + P +W + + + R Sbjct: 65 GDMRHVWCEHGYYQHDPVQQRATRRMTPFVWSYRTDGNQEGVEYVGGQHRQVTRYLCDSG 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELF------- 164 G+ P+ L + F+ +A E + EA + + ++ + Sbjct: 125 MGTGVTVPLHLPGG--AFATFSGAVDAVAAEAPRLAEAQLSPFLLLAHAFQARAQELLDP 182 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R LT RE CLQ + G T++ IA L S TVN +L SA KL A NR++A Sbjct: 183 QERRCHHIALTRRERECLQYSAKGLTAKSIAAALNRSTATVNLHLNSAARKLGARNRVEA 242 Query: 225 IAKAIRFGYI 234 + + + + + Sbjct: 243 VVRGMHYRLL 252 >gi|159897838|ref|YP_001544085.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890877|gb|ABX03957.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 206 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC--YQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ + L + + G + +I L +R + LT RE LQ Sbjct: 96 AGAQGYLLKGAPRDELFAAIRLIHAGGSTLHPLIASKLLRQVQRDTTLVELTPREHEVLQ 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+ +++IA +L ++ TV +L S KL A NR +A+A A I Sbjct: 156 HLAQGFANKQIAYQLNITERTVKFHLNSIFQKLGAHNRTEAVAIAYERQLI 206 >gi|260430562|ref|ZP_05784535.1| regulatory protein, LuxR [Citreicella sp. SE45] gi|260418591|gb|EEX11848.1| regulatory protein, LuxR [Citreicella sp. SE45] Length = 253 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 38/175 (21%), Positives = 62/175 (35%), Gaps = 15/175 (8%) Query: 74 DDFLFHFNSGLLPIIWQSIQE-ETVIESSGQLSVRLEGGLL----PFAGIAFPVRLGFHK 128 D P W + +++I + L F+G+ P+ L Sbjct: 80 DPVQRVAMRSAAPFCWSYDSDIDSIIRPMLTPDIEPVMSYLREREVFSGVTVPIHLPNGD 139 Query: 129 NGYVI---------FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 V ++ ++ + AH + + L + + LT RE Sbjct: 140 FATVTGVSLGRRQNWSGGTSRAIADLSLIAHLFNQSAV-ELLGFDHEDGTQEVRLTPRER 198 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL A G +++E A + SV TV +L +A KL A NR A+ A R I Sbjct: 199 ECLTYASFGNSAKETARIIDRSVPTVVMHLNAAMRKLGARNRTHAVTIATRRRLI 253 >gi|182679457|ref|YP_001833603.1| LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635340|gb|ACB96114.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 239 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 47/223 (21%), Positives = 70/223 (31%), Gaps = 7/223 (3%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 SL + R+ + F L+T ++A + + E + I Sbjct: 21 SLSVIQDRIRAFAGPLGYDRFVLFTASAAREDVVERIYWVEGDWFGTGEAVDALTYIRRC 80 Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 H P W +T ES V G+ P+ G + Sbjct: 81 --PVNRHILEVSEPFFWT----KTRSESGELYQVVRTPRGRGVHGLQIPIFGPSGLEGAM 134 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTS 191 E + + + + L + SSA L+ RE L G Sbjct: 135 SLGGERIDASPQARLALSLVGTAAFLSARRLLEAPNSSATAKLSHREREILAWTAAGRRQ 194 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +IA LGLS TV +L +L + QAI AIR G I Sbjct: 195 ADIAATLGLSERTVENHLRRIRRRLAVMTTAQAIRVAIRNGDI 237 >gi|21222055|ref|NP_627834.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|256786856|ref|ZP_05525287.1| two-component system regulator [Streptomyces lividans TK24] gi|289770751|ref|ZP_06530129.1| two-component system regulator [Streptomyces lividans TK24] gi|4753864|emb|CAB42027.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] gi|289700950|gb|EFD68379.1| two-component system regulator [Streptomyces lividans TK24] Length = 228 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G+++ + LA V + A G ++I +F L + + + Sbjct: 102 LRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDDRPRAPLKARVG 161 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA++L ++ TV ++G VKL +R QA A G Sbjct: 162 ELTERETEVLALIAQGLSNAEIAQRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 221 Query: 233 YI 234 + Sbjct: 222 LV 223 >gi|21220150|ref|NP_625929.1| two-component response regulator [Streptomyces coelicolor A3(2)] gi|256788738|ref|ZP_05527169.1| two-component response regulator [Streptomyces lividans TK24] gi|289772632|ref|ZP_06532010.1| two-component system response regulator [Streptomyces lividans TK24] gi|6119696|emb|CAB59507.1| putative two-component response regulator [Streptomyces coelicolor A3(2)] gi|289702831|gb|EFD70260.1| two-component system response regulator [Streptomyces lividans TK24] Length = 223 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF--------KKRSSAAR 172 L +G+++ + L + + A+G + L+ + + Sbjct: 97 LKAGASGFLLKDAPANELVQAIRVVANGEAMLAPSITRRLLDKYATHLPSGDEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|43288|emb|CAA27327.1| unnamed protein product [Escherichia coli] Length = 241 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 73/209 (34%), Gaps = 13/209 (6%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS- 91 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 92 -IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVI 146 E + + + G F G++ F+ E +L++E+ Sbjct: 99 LFSEAQPLWEAARAHGLRRGVHSVFNA------AQTGALGFLSFSRCSRREIPILSDELQ 152 Query: 147 IEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 ++ + + + L + N ++RE L+ +G TS EIA L +S +TV Sbjct: 153 LKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTV 212 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 N + + K++A N+ Q A G I Sbjct: 213 NFHQKNMQKKINAPNKTQVACYAAATGLI 241 >gi|15614776|ref|NP_243079.1| two-component response regulator [Bacillus halodurans C-125] gi|10174832|dbj|BAB05932.1| two-component response regulator [Bacillus halodurans C-125] Length = 217 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L NGY + + MLA + G V+T + R+LT Sbjct: 95 LQAGANGYQLKEVDPEMLAETIRAVCSGESRLHPKVTKHVLTRMNGDESEEEKRLRDLTN 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+ G +++EIA +L +S TV ++ + KLD +R QA AI++G Sbjct: 155 REKDVLRELAKGQSNKEIASELHISEKTVKTHVSNIFWKLDVHDRTQAALFAIKYGI 211 >gi|302533532|ref|ZP_07285874.1| two-component system response regulator [Streptomyces sp. C] gi|302442427|gb|EFL14243.1| two-component system response regulator [Streptomyces sp. C] Length = 223 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF--------KKRSSAAR 172 L +G+++ + L + + A G + L+ + + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYAGHLPSGEQSLPDTLG 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|119491420|ref|ZP_01623439.1| NarL subfamily protein [Lyngbya sp. PCC 8106] gi|119453415|gb|EAW34578.1| NarL subfamily protein [Lyngbya sp. PCC 8106] Length = 209 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ +E L N + H + D +R S L+ERE L+ Sbjct: 99 LQAGAKGYLLKDTEPDELLNAIRTV-HRGQKYIPPDVGAKLVQRLSNPE-LSERELEVLR 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G ++ +IA L + TV +++ KLD +R QA+ A++ G +C Sbjct: 157 SLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKRGIVC 208 >gi|329314560|gb|AEB88973.1| Response regulator protein vraR [Staphylococcus aureus subsp. aureus T0131] Length = 209 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A+ V + G +V+ KKR+ LTERE Sbjct: 95 LDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|75909280|ref|YP_323576.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703005|gb|ABA22681.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 209 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 53/124 (42%), Gaps = 5/124 (4%) Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN- 173 GI L G ++ TS + + A G + D LE F R A N Sbjct: 85 LEGIDIEAALRSGVRGILLDTSTESEILTAIEAIALGLIV-IHPDVLEFFSVREKAVTNP 143 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LQ+ G G ++ IA+ L +S HTV ++ S KL R +A+ +R Sbjct: 144 VQSLTPREIEVLQMLGSGLGNKAIAQSLHISDHTVKFHVSSIFQKLAVSTRTEAVTVGVR 203 Query: 231 FGYI 234 G I Sbjct: 204 LGLI 207 >gi|54026224|ref|YP_120466.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54017732|dbj|BAD59102.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 220 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV----------ITDFLELFKKRSSAARN 173 L +G+++ + L V + A G +T +K + Sbjct: 97 LSIGASGFLLKDAPAEELVRAVRVVAEGQALLAPTVTRRLIAEVTSRRAASRKPAPELAA 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIAE L ++ TV ++ KL+ +R QA+ A G Sbjct: 157 LTPREREVLELVARGMSNTEIAEALFVAEQTVKTHVSKVFSKLNLRDRAQAVVLAYESGL 216 Query: 234 IC 235 + Sbjct: 217 VT 218 >gi|145860182|dbj|BAF57040.1| DNA-binding response regulator [Streptococcus bovis] Length = 214 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + A G A + ++ K+ +LT RE L+ Sbjct: 99 AGAKGYMLKTSSAAEILNAIQKVARGELAIETEVDKKIKAHDKQPELHEDLTARERDILR 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 159 LLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFKHHLV 209 >gi|57652103|ref|YP_186767.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus COL] gi|82751537|ref|YP_417278.1| two-component response regulator [Staphylococcus aureus RF122] gi|87161005|ref|YP_494517.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195780|ref|YP_500589.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222034|ref|YP_001332856.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus str. Newman] gi|161510103|ref|YP_001575762.1| response regulator VraR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141457|ref|ZP_03565950.1| response regulator VraR [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253734427|ref|ZP_04868592.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|258451050|ref|ZP_05699086.1| two-component system response regulator [Staphylococcus aureus A5948] gi|262050230|ref|ZP_06023081.1| two-component response regulator [Staphylococcus aureus D30] gi|262052884|ref|ZP_06025068.1| two-component response regulator [Staphylococcus aureus 930918-3] gi|282923220|ref|ZP_06330901.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9765] gi|284024930|ref|ZP_06379328.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 132] gi|294849429|ref|ZP_06790171.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9754] gi|304379068|ref|ZP_07361815.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81694172|sp|Q5HEP0|VRAR_STAAC RecName: Full=Response regulator protein vraR gi|57286289|gb|AAW38383.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus COL] gi|82657068|emb|CAI81505.1| two-component response regulator [Staphylococcus aureus RF122] gi|87126979|gb|ABD21493.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203338|gb|ABD31148.1| DNA-binding response regulator VraR, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374834|dbj|BAF68094.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus str. Newman] gi|160368912|gb|ABX29883.1| response regulator VraR [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253727580|gb|EES96309.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257861292|gb|EEV84104.1| two-component system response regulator [Staphylococcus aureus A5948] gi|259159238|gb|EEW44298.1| two-component response regulator [Staphylococcus aureus 930918-3] gi|259161692|gb|EEW46283.1| two-component response regulator [Staphylococcus aureus D30] gi|269941355|emb|CBI49752.1| response regulator VraR [Staphylococcus aureus subsp. aureus TW20] gi|282593131|gb|EFB98130.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9765] gi|294823566|gb|EFG39993.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A9754] gi|298695222|gb|ADI98444.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|300078692|gb|ADJ67243.1| VraR [Staphylococcus aureus] gi|300078695|gb|ADJ67245.1| VraR [Staphylococcus aureus] gi|300078698|gb|ADJ67247.1| VraR [Staphylococcus aureus] gi|302751756|gb|ADL65933.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342303|gb|EFM08195.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315196046|gb|EFU26406.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS01] gi|320139738|gb|EFW31607.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142346|gb|EFW34160.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323439154|gb|EGA96882.1| two-component response regulator [Staphylococcus aureus O11] gi|323441562|gb|EGA99212.1| two-component response regulator [Staphylococcus aureus O46] gi|329728633|gb|EGG65063.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus 21189] Length = 209 Score = 108 bits (269), Expect = 9e-22, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A+ V + G +V+ KKR+ LTERE Sbjct: 95 LDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|15924874|ref|NP_372408.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|15927458|ref|NP_374991.1| two-component response regulator [Staphylococcus aureus subsp. aureus N315] gi|21283553|ref|NP_646641.1| two-component response regulator [Staphylococcus aureus subsp. aureus MW2] gi|49484125|ref|YP_041349.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49486702|ref|YP_043923.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|148268356|ref|YP_001247299.1| two component LuxR family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394418|ref|YP_001317093.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156980200|ref|YP_001442459.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|253314946|ref|ZP_04838159.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253729642|ref|ZP_04863807.1| two-component response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255006672|ref|ZP_05145273.2| DNA-binding response regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257426016|ref|ZP_05602438.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257428689|ref|ZP_05605084.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257431299|ref|ZP_05607675.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257434017|ref|ZP_05610368.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436921|ref|ZP_05612963.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257793762|ref|ZP_05642741.1| two-component system response regulator [Staphylococcus aureus A9781] gi|258408904|ref|ZP_05681186.1| two-component system response regulator [Staphylococcus aureus A9763] gi|258420992|ref|ZP_05683923.1| two-component system response regulator [Staphylococcus aureus A9719] gi|258422961|ref|ZP_05685860.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|258430036|ref|ZP_05688406.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|258443446|ref|ZP_05691788.1| two-component system response regulator [Staphylococcus aureus A8115] gi|258445304|ref|ZP_05693495.1| two-component system response regulator [Staphylococcus aureus A6300] gi|258447868|ref|ZP_05696002.1| response regulator protein vraR [Staphylococcus aureus A6224] gi|258453301|ref|ZP_05701286.1| two-component system response regulator [Staphylococcus aureus A5937] gi|269203536|ref|YP_003282805.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus ED98] gi|282894549|ref|ZP_06302777.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8117] gi|282904515|ref|ZP_06312400.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus C160] gi|282906287|ref|ZP_06314139.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282909203|ref|ZP_06317019.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911509|ref|ZP_06319309.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282914681|ref|ZP_06322466.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M899] gi|282917229|ref|ZP_06324984.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus D139] gi|282919718|ref|ZP_06327450.1| two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C427] gi|282925122|ref|ZP_06332782.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C101] gi|282928056|ref|ZP_06335663.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A10102] gi|283771033|ref|ZP_06343924.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus H19] gi|283958645|ref|ZP_06376091.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus A017934/97] gi|293507758|ref|ZP_06667600.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus 58-424] gi|293510776|ref|ZP_06669478.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus M809] gi|293539315|ref|ZP_06671994.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M1015] gi|295407262|ref|ZP_06817061.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8819] gi|295428465|ref|ZP_06821092.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275883|ref|ZP_06858390.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MR1] gi|297208909|ref|ZP_06925314.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246211|ref|ZP_06930062.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8796] gi|297590064|ref|ZP_06948704.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300913033|ref|ZP_07130471.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|81696298|sp|Q6G850|VRAR_STAAS RecName: Full=Response regulator protein vraR gi|81696461|sp|Q6GFH3|VRAR_STAAR RecName: Full=Response regulator protein vraR gi|81704309|sp|Q7A0I0|VRAR_STAAW RecName: Full=Response regulator protein vraR gi|81704831|sp|Q7A2Q1|VRAR_STAAM RecName: Full=Response regulator protein vraR gi|81705432|sp|Q7A4R9|VRAR_STAAN RecName: Full=Response regulator protein vraR gi|90116383|sp|P0C0Z1|VRAR_STAA1 RecName: Full=Response regulator protein vraR gi|9501772|dbj|BAB03325.1| response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|13701677|dbj|BAB42970.1| two-component response regulator [Staphylococcus aureus subsp. aureus N315] gi|14247656|dbj|BAB58046.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu50] gi|16151628|dbj|BAB69827.1| response regulator [Staphylococcus aureus] gi|21204994|dbj|BAB95689.1| two-component response regulator [Staphylococcus aureus subsp. aureus MW2] gi|49242254|emb|CAG40961.1| putative response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49245145|emb|CAG43611.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|147741425|gb|ABQ49723.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JH9] gi|149946870|gb|ABR52806.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156722335|dbj|BAF78752.1| two-component response regulator [Staphylococcus aureus subsp. aureus Mu3] gi|253726638|gb|EES95367.1| two-component response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257271159|gb|EEV03316.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257274333|gb|EEV05845.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257277948|gb|EEV08604.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257280943|gb|EEV11087.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257283710|gb|EEV13835.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257787734|gb|EEV26074.1| two-component system response regulator [Staphylococcus aureus A9781] gi|257840351|gb|EEV64813.1| two-component system response regulator [Staphylococcus aureus A9763] gi|257842940|gb|EEV67358.1| two-component system response regulator [Staphylococcus aureus A9719] gi|257846748|gb|EEV70763.1| two component transcriptional regulator [Staphylococcus aureus A9635] gi|257849630|gb|EEV73598.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|257851331|gb|EEV75271.1| two-component system response regulator [Staphylococcus aureus A8115] gi|257855822|gb|EEV78746.1| two-component system response regulator [Staphylococcus aureus A6300] gi|257858800|gb|EEV81669.1| response regulator protein vraR [Staphylococcus aureus A6224] gi|257864509|gb|EEV87252.1| two-component system response regulator [Staphylococcus aureus A5937] gi|262075826|gb|ACY11799.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus ED98] gi|282313080|gb|EFB43478.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C101] gi|282316356|gb|EFB46733.1| two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus C427] gi|282318856|gb|EFB49211.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus D139] gi|282321395|gb|EFB51721.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M899] gi|282324518|gb|EFB54830.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282326771|gb|EFB57068.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330484|gb|EFB60001.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus Btn1260] gi|282590120|gb|EFB95201.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A10102] gi|282595071|gb|EFC00038.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus C160] gi|282763036|gb|EFC03168.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8117] gi|283459627|gb|EFC06718.1| two component transcriptional regulator VraR LuxR family protein [Staphylococcus aureus subsp. aureus H19] gi|283471154|emb|CAQ50365.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus ST398] gi|283789685|gb|EFC28507.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus A017934/97] gi|285817564|gb|ADC38051.1| Two component transcriptional regulator VraR, LuxR family [Staphylococcus aureus 04-02981] gi|290919850|gb|EFD96919.1| DNA-binding response regulator VraR [Staphylococcus aureus subsp. aureus M1015] gi|291094821|gb|EFE25089.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus 58-424] gi|291466407|gb|EFF08931.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus M809] gi|294967837|gb|EFG43867.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8819] gi|295127447|gb|EFG57086.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus subsp. aureus EMRSA16] gi|296886470|gb|EFH25398.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176918|gb|EFH36175.1| LuxR family Two component transcriptional regulator VraR [Staphylococcus aureus A8796] gi|297577192|gb|EFH95906.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300885811|gb|EFK81018.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333549|gb|ADL23742.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JKD6159] gi|312437651|gb|ADQ76722.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|312830256|emb|CBX35098.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129309|gb|EFT85303.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS03] gi|315193411|gb|EFU23808.1| response regulator VraR [Staphylococcus aureus subsp. aureus CGS00] gi|329724817|gb|EGG61321.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus 21172] Length = 209 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A+ V + G +V+ KKR+ LTERE Sbjct: 95 LDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|326943150|gb|AEA19046.1| two-component response regulator YocG [Bacillus thuringiensis serovar chinensis CT-43] Length = 200 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G +V D + + L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEDLAAAIRNVMKGK-REVSQDLMFGLWQEQ---NPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 152 KEGKTANEIAKVLYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 >gi|304404571|ref|ZP_07386232.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304346378|gb|EFM12211.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 217 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA--RNLTE 176 GYV+ + L + A G Y +++ D++E K+ S +L++ Sbjct: 97 AGAAGYVLKNAPHEELLTAIRSVARGDAYLYPTATKRLMNDYVERMKRGESGDVYHSLSD 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L GY ++EIAE+L +SV TV + + KL R + I A++ G + Sbjct: 157 REKEVLGLTAKGYANKEIAEQLVISVKTVETHKSNVMEKLGLKTRPELIKYAMKKGLL 214 >gi|329940013|ref|ZP_08289295.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329300839|gb|EGG44735.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 225 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 11/126 (8%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR-------SS 169 FP L GY+ + + V G V LE + Sbjct: 98 FPA-LRAGARGYLTKDAGGEEILRAVRSVVSGQAGLAPSVQRRLLERLDRPGTVVTSPEE 156 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT RE L L +G +++EIA +L +S TV ++ + K +R QA+ A Sbjct: 157 APDGLTVREVEVLVLIAEGLSNQEIARRLHVSTATVKTHINNMFAKTGLKDRAQAVRYAF 216 Query: 230 RFGYIC 235 R G + Sbjct: 217 RKGLVT 222 >gi|297528821|ref|YP_003670096.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297252073|gb|ADI25519.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 391 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 84/226 (37%), Gaps = 25/226 (11%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 R L Q + + A+ +D + Q+L EL + + + + E Sbjct: 181 FSRCALFQ-FVNQESTAIGLHGHGVDNGQIQRLRVELDSIPMLKESVGKLKAEV------ 233 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN-------- 129 H PI V +S Q + + PV + Sbjct: 234 -HEFRHFRPIY--------VPRASEQFPRLYVDPFGLASLVIVPVYVPTEGRMIGGVVLD 284 Query: 130 -GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G F + L ++ A ++ K+ A +L+ RE L+L DG Sbjct: 285 RGPGRFFAVDRRLFPALMKFGQSAGELLLKWIKAPKKEWEGMAESLSPREIEILKLLADG 344 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ E A +L LS TV Y+ SA KL+A NR +A+AKA+R G I Sbjct: 345 ASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAKALRLGLI 390 >gi|16080459|ref|NP_391286.1| two-component response regulator YvfT [Bacillus subtilis subsp. subtilis str. 168] gi|221311357|ref|ZP_03593204.1| hypothetical protein Bsubs1_18471 [Bacillus subtilis subsp. subtilis str. 168] gi|221315684|ref|ZP_03597489.1| hypothetical protein BsubsN3_18387 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320599|ref|ZP_03601893.1| hypothetical protein BsubsJ_18350 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324884|ref|ZP_03606178.1| hypothetical protein BsubsS_18506 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312958|ref|YP_004205245.1| two-component response regulator YvfT [Bacillus subtilis BSn5] gi|81814911|sp|O07019|YVFU_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yvfU gi|1945721|emb|CAB07991.1| hypothetical protein [Bacillus subtilis] gi|2635919|emb|CAB15411.1| two-component response regulator [YvfT] [Bacillus subtilis subsp. subtilis str. 168] gi|320019232|gb|ADV94218.1| two-component response regulator (YvfT) [Bacillus subtilis BSn5] Length = 200 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ E LA+ + G +V + L R LT RE L+LA Sbjct: 96 AGAHGYLLKDGEIDDLADAIRKCVKGK--RVFSPELTFNMMRD--ENPLTVREQEILRLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+++I +L LS TV Y+ KL+A NR +A + A G+I Sbjct: 152 ALGKTTKDITLELYLSQGTVRNYISEIIQKLNAKNRTEAASIAEEKGWI 200 >gi|294054035|ref|YP_003547693.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293613368|gb|ADE53523.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 208 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY+ T+ + E I E E + R LT RE LQL Sbjct: 99 AGVKGYLTKTAGAVEDVMEAIHEVANGGTFFPASIQEKLEAR-KQQEELTPRELEVLQLL 157 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G+G +++EIA+ + +S+ TV ++ + KL A +R QA+ A + G + Sbjct: 158 GEGQSNKEIADVMDISLSTVKIHVTNIRDKLGAADRTQAVVIAFKRGILS 207 >gi|317488844|ref|ZP_07947374.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316911918|gb|EFV33497.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 228 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 14/125 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--------- 171 L +G+++ +E +A+ V + A G + +E F A+ Sbjct: 99 LAAGASGFLLKDAEPDEIASAVRVVAQGDALIEPSITRRLIETFVAARPASLGGAAAVAA 158 Query: 172 --RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R LT+RE L L G+T++EI +L +S TV +L KLDA +R Q + +A Sbjct: 159 GLRTLTDREREILALVARGFTNDEIGSELFISPATVKTHLARIMAKLDAHDRAQLVVRAY 218 Query: 230 RFGYI 234 G + Sbjct: 219 EGGLV 223 >gi|254424512|ref|ZP_05038230.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196192001|gb|EDX86965.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 211 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 2/110 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + LA V HG Y I + L ++ + +LT+RE L Sbjct: 99 LQAGARGYLLKDTTAEDLATAVRQVHHGKRYIPIEVGIRLTERIQES--DLTDRELEVLG 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G ++ EIA+ L +S TV ++ + K +R QA+ A+R G Sbjct: 157 ELTEGKSNLEIAKALSISEGTVKFHINNILSKFGVSDRTQAVITALRRGI 206 >gi|315499426|ref|YP_004088229.1| transcriptional regulator, luxr family [Asticcacaulis excentricus CB 48] gi|315417438|gb|ADU14078.1| transcriptional regulator, LuxR family [Asticcacaulis excentricus CB 48] Length = 248 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 63/184 (34%), Gaps = 11/184 (5%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 P + + Y D + + P W I+ E + + +R Sbjct: 63 STYPTVWQDYYAHNGLARIDPVVKWAVGSVRPFRWADIEHEAELTRRQRQFLREAEAGGL 122 Query: 115 FAGIAFPVRLGFHKNGYVIFTSE-FLMLANEVIIEAHGACYQVITDFLELFK---KRSSA 170 + GI P G + + E + C+ + L + S A Sbjct: 123 YNGIGVPFPGPKTLRGGIALATSVRKARPMENLDVLAAYCHHFYAVYKRLVPPGLRLSPA 182 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LT E L G ++E IA++L + +V+ ++ + K NR A K + Sbjct: 183 AASLTRTEQEVLFRLAHGLSNEIIADRLSIKAGSVDFHVQNIFRKFGVNNRTAAAMKGLM 242 Query: 231 FGYI 234 GYI Sbjct: 243 GGYI 246 >gi|297198515|ref|ZP_06915912.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197716175|gb|EDY60209.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF--------KKRSSAAR 172 L +G+++ + L + + A G + L+ + + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGDEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|325067354|ref|ZP_08126027.1| two component transcriptional regulator, LuxR family protein [Actinomyces oris K20] Length = 244 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 15/127 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA--------- 171 L +G+++ + LA + A G ++ LE+F ++ Sbjct: 118 LRAGASGFLLKDTRPTELAEAIRTVASGEAVVSPRITQRMLEMFAASLPSSDAPEQSSCD 177 Query: 172 ---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE L L G ++ EIA L +S TV ++G+ KLD +R+QA+ A Sbjct: 178 PRIESLTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVA 237 Query: 229 IRFGYIC 235 G + Sbjct: 238 YETGLMA 244 >gi|289624509|ref|ZP_06457463.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330869296|gb|EGH04005.1| LuxR transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 261 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 65/199 (32%), Gaps = 28/199 (14%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ +++Y D + H + P W+ + + ++ Sbjct: 60 SNYPDSWLKSYVASNYHLIDPIIKHAWHSITPFFWREARNAAQGVETDDF-LKRSAKYQL 118 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLM--LANEVIIEAHGACYQVITDFLELFKKRSS--- 169 +G F + + + + +A +I L K R+ Sbjct: 119 SSGATFTLHDASGLFAALSLCNARQQKDFDQRIREKAADIQMSLIRFHDRLIKTRAPHEL 178 Query: 170 ----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 A L+ RET L+ G + EIAE +S TV ++ + + KL+ QA Sbjct: 179 FPQPAQCKLSTRETGVLKWVAMGKSYSEIAEIFSISERTVKFHMSNVSSKLEVRTAKQAS 238 Query: 226 AK-----------AIRFGY 233 K A+ G+ Sbjct: 239 TKPSTWAWSDSGSAVHAGW 257 >gi|218679157|ref|ZP_03527054.1| LuxR family transcriptional regulator [Rhizobium etli CIAT 894] Length = 265 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 16/175 (9%) Query: 74 DDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLL----PFAGIAFPVRLGFHK 128 D P W +T+I+ L G+ PV + Sbjct: 80 DPVQQVALRSTAPFFWNYDTDADTLIKRFMSDDTAPVARYLNERDMSTGVTVPVHMPRG- 138 Query: 129 NGYVIFTS-------EFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERET 179 Y T +F A I + + + LF K +S LTERE Sbjct: 139 -DYATVTGIRFGRNDDFERYALRYIADFNLLAHVFHETAYSLFDKTAKSVGTVRLTERER 197 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL+ + +GY+++EI+ +G SV TV +L +A KL A NR QA+ +A + + Sbjct: 198 ECLRHSAEGYSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRLL 252 >gi|329939099|ref|ZP_08288473.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329301984|gb|EGG45877.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 223 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF--------KKRSSAAR 172 L +G+++ + L + + A G + L+ + + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGDEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|294625280|ref|ZP_06703918.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600401|gb|EFF44500.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 254 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 67/188 (35%), Gaps = 15/188 (7%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQSIQEET-----VIESSGQLSVRLEGGLL 113 GD+ ++ E D P +W + + + + R Sbjct: 65 GDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYRTDGSCPGVEYVGGQHRQVTRYLCDSG 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KK 166 G+ P+ L + + EA + ++ + ++ Sbjct: 125 MGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQARAQELLDPQE 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ Sbjct: 185 RRCHHIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVV 244 Query: 227 KAIRFGYI 234 + + + + Sbjct: 245 RGMHYRLL 252 >gi|308177198|ref|YP_003916604.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307744661|emb|CBT75633.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 230 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSS--------A 170 +G+++ + L V G +++ + KK ++ A Sbjct: 105 AGASGFLLKDAPPEELLESVRTVNRGDAVIAPSTTRRLLDHMTPMLKKNAAQHDEHLIAA 164 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L G ++ EIAEKL LS TV ++G KL+A +R+QA+ A + Sbjct: 165 VESLTPREREVFGLIAVGLSNPEIAEKLFLSEATVKTHVGHILAKLEARDRVQAVVIAYQ 224 Query: 231 FGYIC 235 G + Sbjct: 225 TGVVT 229 >gi|294664209|ref|ZP_06729588.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606021|gb|EFF49293.1| transcriptional regulator ahyR/asaR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 254 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 67/188 (35%), Gaps = 15/188 (7%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQSIQEET-----VIESSGQLSVRLEGGLL 113 GD+ ++ E D P +W + + + + R Sbjct: 65 GDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYRTDGSCPGVEYVGGQHRQVTRYLCDSG 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KK 166 G+ P+ L + + EA + ++ + ++ Sbjct: 125 MGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQARAQELLDPQE 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ Sbjct: 185 RRCHHIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVV 244 Query: 227 KAIRFGYI 234 + + + + Sbjct: 245 RGMHYRLL 252 >gi|326328660|ref|ZP_08195000.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325953621|gb|EGD45621.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 220 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L +G+++ + LA+ + + G QVI F +KR R L Sbjct: 97 LRLGASGFLLKDASPDELASAIRVVHAGEALLSPSVTRQVIAQFARAPRKRKQDPRLKQL 156 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+ G ++ EIA +L L+ TV ++ KL +R QA+ A G + Sbjct: 157 TEREREVLENIARGSSNSEIAAELFLAEQTVKTHVSRILGKLGLRDRAQAVVFAYESGLV 216 Query: 235 C 235 Sbjct: 217 A 217 >gi|256397512|ref|YP_003119076.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363738|gb|ACU77235.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 239 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L +G+++ L + G +++ F + S A Sbjct: 113 LKAGASGFLLKDVPPPDLLAAIRAVHSGEAVVAPSTTRRLLDKFAPMLPSESEPAPPELT 172 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G ++ EIA KL LS TV ++G +KL +R+QA+ A G Sbjct: 173 VLTDREHEVLLLVAQGMSNAEIAGKLFLSEATVKTHVGRILMKLGLRDRVQAVVLAYETG 232 Query: 233 YI 234 + Sbjct: 233 LV 234 >gi|271965569|ref|YP_003339765.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508744|gb|ACZ87022.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 216 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L +G+++ + + V G +++ + LT+ Sbjct: 96 LRAGASGFLLKDAPAEEIVAAVRTVHEGDAVIAPSTTRRLLDHVAPTLPLPADPPVPLTD 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G T+ EIA L LS TV ++G KL +R+QA+ A G I Sbjct: 156 REREVLRHIAQGETNAEIAGCLFLSEGTVKTHVGRILAKLQLRDRVQAVIWAYEHGQI 213 >gi|304407706|ref|ZP_07389357.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304343189|gb|EFM09032.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 242 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 56/139 (40%), Gaps = 26/139 (18%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------------QVITDFLELFKKRSS 169 L GY++ E L N + G Y + +T E+ + Sbjct: 103 TLRKGATGYLLKDMEAEALINAIRSVMTGHSYIHPKVTGKLINQLRRMTYLDEMGAVSGA 162 Query: 170 AA-------------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 AA LT RE L+L +G +++ I E L +S TV ++ S K+ Sbjct: 163 AAGKETGVKFVAGEDNPLTRREAEVLRLMAEGKSNKTIGEFLFISEKTVKNHVSSILQKM 222 Query: 217 DAVNRIQAIAKAIRFGYIC 235 + +R QA+ +I+FG++ Sbjct: 223 EVDDRTQAVIHSIKFGWVT 241 >gi|302550305|ref|ZP_07302647.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467923|gb|EFL31016.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 223 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF--------KKRSSAAR 172 L +G+++ + L + + A G + L+ + + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGDEPVPDTLD 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|161502928|ref|YP_001570040.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864275|gb|ABX20898.1| hypothetical protein SARI_00987 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 251 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 77/236 (32%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ ++ + + L R++ F Y++ P + I P Sbjct: 26 LRFQEMATAEGVYTELQYQTQRLE---FDYYSLCVRHPVPFTRPKI-------SLRTTYP 75 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y + + L P + + V+ Q G+ V Sbjct: 76 QAWVTHYQAENYIAIDPVLKPENFREGHLHWDNVLFHEAQAMWDAAQRFGLRRGVTQSVM 135 Query: 124 LGFHKNGYVIFT----SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L G++ + +EV + + ++ L ++RE Sbjct: 136 LPNRAVGFLSVSRGSLGCSSFTYDEVELRLQLLARESLSALTRLEDDIVMVPEMRFSKRE 195 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 196 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 251 >gi|332668949|ref|YP_004451957.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332337987|gb|AEE44570.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 226 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 16/126 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKK-------------R 167 L +G+++ T+ L + + A G +V+ L+LF + Sbjct: 94 LRAGASGFLLKTARPDELVDAIRTVAAGTSVVAPRVLRRMLDLFAPHLPTGGRAPAPDGQ 153 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+L +G ++ EIA +L +S TV ++G+ KL A +R+QA+ Sbjct: 154 DPRLAALTPRELDVLRLVAEGASNVEIAAELVVSEATVKTHVGNVFAKLGARDRVQAVII 213 Query: 228 AIRFGY 233 A G Sbjct: 214 AYECGL 219 >gi|312867898|ref|ZP_07728103.1| putative oxygen regulatory protein NreC [Streptococcus parasanguinis F0405] gi|311096653|gb|EFQ54892.1| putative oxygen regulatory protein NreC [Streptococcus parasanguinis F0405] Length = 210 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L GY++ TS + V A G A ++ +E K + +LT RE Sbjct: 91 PV-LDAGAKGYILKTSSATEILQAVRKVAKGEFAIETEVSQKVESRKNHAELHDDLTARE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 150 RDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFRHHLV 205 >gi|172064983|ref|YP_001815695.1| LuxR family transcriptional regulator [Burkholderia ambifaria MC40-6] gi|171997225|gb|ACB68142.1| transcriptional regulator, LuxR family [Burkholderia ambifaria MC40-6] Length = 239 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 73/247 (29%), Gaps = 29/247 (11%) Query: 4 NTLTGKKSSSLQELSPRLHLIQNR---IKARNFALYTINSALDFPRRQQLICELHNYDLD 60 N +SL+++ N ++A F Y + P + I + Sbjct: 2 NQWRESLLASLEQVKTASEAFDNLAPAVRALGFEYYAYVLRITIPITRPAI-------MG 54 Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + P Y D L + + P+ W R Sbjct: 55 WSNYPEAWRTHYTQRDYQHADPVLHYGQACTRPMPW------PGPLPGYDAFWRDAAAFG 108 Query: 114 PFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 G + R G V + + E + L + Sbjct: 109 LCYGWSQTTRDHRGAMGTVSLVRGGPPIAPDELRRTEPEMIWFCQFVHATMSNLIVSDVM 168 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S A L+ RE L +G T+ E+A L LS V ++ +A KLDA N+ A K Sbjct: 169 PSGAMRLSLREKQVLHWTAEGKTAAEVAVILQLSERNVGFHIQNAIDKLDAANKTHATVK 228 Query: 228 AIRFGYI 234 A G I Sbjct: 229 AAMLGLI 235 >gi|70726072|ref|YP_252986.1| two-component response regulator [Staphylococcus haemolyticus JCSC1435] gi|88952437|sp|Q4L7J5|VRAR_STAHJ RecName: Full=Response regulator protein vraR gi|68446796|dbj|BAE04380.1| two-component response regulator [Staphylococcus haemolyticus JCSC1435] Length = 209 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A+ V +G +V+ KKR+ LTERE Sbjct: 95 LDAGVDSYILKTTSASDIADAVRKTFNGESVFEPEVLVKMRNRMKKRAELYEMLTEREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|315641236|ref|ZP_07896313.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] gi|315483003|gb|EFU73522.1| DNA-binding response regulator [Enterococcus italicus DSM 15952] Length = 209 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL-ELFKKRSSAARNLTERETSC 181 +GY++ TS +A + G QV E + LT RE Sbjct: 96 AGASGYLLKTSAAHDIAQAIRTIYQGGRVVEPQVSNKLRNETSNRNFHLHDELTNREKEV 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQL +G +++EIA++L +++ TV ++ + KL+ +R QA A + GYI Sbjct: 156 LQLISNGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQAAIYAFKHGYI 208 >gi|156744143|ref|YP_001434272.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235471|gb|ABU60254.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 213 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 2/114 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSC 181 + GY++ ++ L + A G L + + + LTERET Sbjct: 95 MRAGAMGYLLKDTQAEELRRAIKAAAAGQVQLSPRAAARLMRDVRAPESPEKLTERETDV 154 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+L G ++EIA +L + TV ++ + KLD +R QA A+R G + Sbjct: 155 LRLLALGRANKEIARELNIGEKTVKTHVSAILRKLDVPSRTQAALYAVRIGLVS 208 >gi|163943040|ref|YP_001647924.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163865237|gb|ABY46296.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 200 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA+ + G + I+ EL L++RE L LA Sbjct: 96 AGVHGYLLKDSPSEDLASAIRNVMKGK--REISQ--ELMFGLWQEQNPLSDREKEVLLLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A G+ Sbjct: 152 KEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEKGW 199 >gi|318061908|ref|ZP_07980629.1| two component system response regulator [Streptomyces sp. SA3_actG] gi|318078461|ref|ZP_07985793.1| two component system response regulator [Streptomyces sp. SA3_actF] Length = 224 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA---RN 173 L +G+++ + L V + A G ++I DF A + Sbjct: 99 LRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFARQRPAPGKPALRLKA 158 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L L G ++ EIAE L L+ TV ++ KL +R QA+ A G Sbjct: 159 LTERETEVLTLVARGRSNAEIAESLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESGL 218 Query: 234 IC 235 + Sbjct: 219 VA 220 >gi|148554913|ref|YP_001262495.1| regulatory protein LuxR [Sphingomonas wittichii RW1] gi|148500103|gb|ABQ68357.1| regulatory protein, LuxR [Sphingomonas wittichii RW1] Length = 278 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 41/174 (23%), Positives = 65/174 (37%), Gaps = 14/174 (8%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF-----AGIAFPVRLGFHKN 129 P W + + + L AGI PV L F + Sbjct: 91 PVAEACRVESRPF-WANRDGARDRDGTPILRQFDFAAHYGRLVENPAGIVVPVHLPFSRI 149 Query: 130 GYVIFTS-EFLMLANEVIIEAHGACYQVITDF-------LELFKKRSSAARNLTERETSC 181 G V F+ + ++ H ++ LE + A LT E +C Sbjct: 150 GMVSFSCRDNRRDDLSRELDEHFETLYLLGHLFIEGYARLETGDRWLPDAVTLTRLEVNC 209 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+ G T +EIA +G + T+ +L +A +KL A NR QA+ +A + GY+ Sbjct: 210 LRWVARGKTDDEIATIMGRARPTIRFHLQNAAIKLGAANRSQAVFRAGQLGYLS 263 >gi|297160873|gb|ADI10585.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L +G+++ + L + V I A G V + F ++ A R Sbjct: 99 LRAGASGFLLKDAPPADLISAVRIVAAGEALLAPSVTRRLIADFARQRPAPRKNFAARRS 158 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L+L G +++EIAE L L+ TV ++G KL +R QA+ A G Sbjct: 159 GLTPRETEVLELIARGLSNQEIAESLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYESG 218 Query: 233 YIC 235 + Sbjct: 219 LVT 221 >gi|148657524|ref|YP_001277729.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148569634|gb|ABQ91779.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 223 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 15/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L GY++ +A V A G +V+ +F L A Sbjct: 94 LKAGARGYLLKDISSEEMAEAVRTVARGEALIQPSIARKVVAEFSRLAAGSPPAPERSPL 153 Query: 174 -----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE L+ G +++EIA L ++ TV ++ + KLD +R QA+ KA Sbjct: 154 KLPAALTERELDVLKALARGMSNKEIAAALVITEGTVKTHISNILAKLDVRDRTQAVLKA 213 Query: 229 IRFGYI 234 + + Sbjct: 214 QQLRLL 219 >gi|329922778|ref|ZP_08278313.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328941920|gb|EGG38204.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 200 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 3/108 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 N Y++ S LA + G ++ L + + S LTERE L L Sbjct: 94 AGANAYLLKDSPSEELAASIRSIMAG--RRIYASEL-VDEAYSGEENPLTEREKEVLGLI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA +L ++ TV Y+ KL NRI+AI + G+ Sbjct: 151 ADGKNTKEIANQLFITTGTVRNYISVILDKLGVSNRIEAITRFKEKGW 198 >gi|218294966|ref|ZP_03495820.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] gi|218244874|gb|EED11398.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] Length = 217 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 GY++ ++ L + G ++I DF ++ L+ERE Sbjct: 96 AGARGYLLKDTDAKELIEAIRRVHAGEVLLDAELAGRIIQDFRARKEQSLPLHAELSERE 155 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L GYT+ EIA +L LS TV L KL NR QA AIR G Sbjct: 156 IQILKLVAQGYTNLEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREGL 210 >gi|172037280|ref|YP_001803781.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171698734|gb|ACB51715.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 247 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN----LTE 176 L + Y I + L + GA Y Q+ L+ K + L+E Sbjct: 130 LSSGADAYCIKGASLERLLAAIEAAQDGATYLDPQIARLVLDNLKSPNPEPNQNIALLSE 189 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G ++ EIAE L LS +T+ ++ KL +R+QA A+R G + Sbjct: 190 RELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 247 >gi|62737761|gb|AAX98178.1| response regulator [Streptomyces aizunensis] Length = 201 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 48/110 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L V A G + +LF+ R L++RE LQL Sbjct: 92 AGAAGYLLKGSSRDELVQAVKAAARGETVLTPSLAPKLFRARVVEPPALSDREREVLQLV 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G T+ +I +L +S TV +L + KL +R A+ A++ G + Sbjct: 152 SLGLTNADIGRQLFISEATVKTHLLRSFKKLSVSDRTAAVITALKLGLLS 201 >gi|149907939|ref|ZP_01896607.1| transcriptional regulator, LuxR family [Moritella sp. PE36] gi|149808945|gb|EDM68876.1| transcriptional regulator, LuxR family [Moritella sp. PE36] Length = 244 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 16/184 (8%) Query: 63 DIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEET--VIESSGQLSVRLEGGLL 113 ++ E Y D L + + W++ + + + Q+S + + Sbjct: 65 NLSEEWQEIYFQRKFFNQDPILSAIANTTSAVDWRTATSQANYISDDFKQMSKK----YV 120 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAA 171 G++ V+ + L E + F + ++S Sbjct: 121 GSDGLSILVKTDVGST-LISLVIPESSLDAEHNQLIEYIAPHIHEVFNRQGENIRKSLWK 179 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 NL++RE L A +G ++ + + L +S TV + + KL+ VNR QAIA+AI F Sbjct: 180 PNLSKRELEVLNWAKEGKSNWDTSLILAISERTVKFHFSNIFKKLEVVNRSQAIARAIHF 239 Query: 232 GYIC 235 G + Sbjct: 240 GLVS 243 >gi|171778156|ref|ZP_02919413.1| hypothetical protein STRINF_00249 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283138|gb|EDT48562.1| hypothetical protein STRINF_00249 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 214 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + A G A + ++ ++ +LT RE L+ Sbjct: 99 AGAKGYMLKTSSAAEILNAIQKVARGELAIETEVDKKIKAHDQKPELHEDLTARERDILR 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 159 LLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFKHHLV 209 >gi|115360652|ref|YP_777789.1| LuxR family transcriptional regulator [Burkholderia ambifaria AMMD] gi|115285980|gb|ABI91455.1| transcriptional regulator, LuxR family [Burkholderia ambifaria AMMD] Length = 237 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 39/203 (19%), Positives = 67/203 (33%), Gaps = 11/203 (5%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 I + +K F +P ++ + N+ + D L Sbjct: 25 IASAVKEIGFEYSAYCLQTPWPLSRRKVLVFSNFPEPWQRRYHDARYIDVDPLLRRGRQS 84 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA- 142 P+IW + V E + QL G + +G + L Sbjct: 85 YAPVIWS----DAVFEGTPQL-WEEAQAHGLRYGYSLAAVSNCGVSGMMSMARSHTPLTV 139 Query: 143 -----NEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 E+ + + L K LT+RE L+ DG T+ EI+ Sbjct: 140 RELQQQELKMRWLVNAAHLAITRAVLPKLSPEGDIELTDREVEVLKWVADGKTAAEISMI 199 Query: 198 LGLSVHTVNAYLGSATVKLDAVN 220 + +SV+TVN ++ +A KL+ N Sbjct: 200 MLISVYTVNFHVKNAVTKLNTSN 222 >gi|21231619|ref|NP_637536.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768259|ref|YP_243021.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188991396|ref|YP_001903406.1| Two-component system regulatory protein, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|21113311|gb|AAM41460.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573591|gb|AAY49001.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733156|emb|CAP51354.1| Two-component system regulatory protein, LuxR family [Xanthomonas campestris pv. campestris] Length = 213 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ ++ L + + G V E L+ RET L Sbjct: 100 LQAGACGYLLKSALRRELVDTIRDVRRGQRRHVPASVAENIAAH-VLDDALSARETEVLN 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G ++++I LG+S TV A++ + KL +R A+ A+R G + Sbjct: 159 LVATGCSNKQIGNALGISEETVKAHMKNILCKLGVRDRTHAVTVALRRGILS 210 >gi|297201227|ref|ZP_06918624.1| two-component system regulator [Streptomyces sviceus ATCC 29083] gi|197712910|gb|EDY56944.1| two-component system regulator [Streptomyces sviceus ATCC 29083] Length = 227 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L +G+++ + LA V + A G ++I +F L + + + Sbjct: 101 LRAGASGFLLKDASAEQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDHRPRAPLKTRVG 160 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA +L ++ TV ++G VKL +R QA A G Sbjct: 161 ELTERETEVLALIAQGLSNAEIAGRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 220 Query: 233 YI 234 + Sbjct: 221 LV 222 >gi|261405105|ref|YP_003241346.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261281568|gb|ACX63539.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 200 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 3/108 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 N Y++ S LA + G ++ L + + S LTERE L L Sbjct: 94 AGANAYLLKDSPSEELAASIRSIMAG--RRIYASEL-VDEAYSGEENPLTEREKEVLGLI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA +L ++ TV Y+ KL NRI+AI + G+ Sbjct: 151 ADGKNTKEIANQLFITTGTVRNYISVILDKLGVSNRIEAITRFKEKGW 198 >gi|319892925|ref|YP_004149800.1| Two component transcriptional regulator VraR [Staphylococcus pseudintermedius HKU10-03] gi|317162621|gb|ADV06164.1| Two component transcriptional regulator VraR [Staphylococcus pseudintermedius HKU10-03] gi|323464027|gb|ADX76180.1| two-component response regulator VraR [Staphylococcus pseudintermedius ED99] Length = 209 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A V + G +V+ K+R+ LTERE Sbjct: 95 LDAGVDSYILKTTSANDIAEAVRKTSRGESVFEAEVLVKMRNRMKQRAELYELLTEREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + G I Sbjct: 155 ILLLISKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLI 208 >gi|227543314|ref|ZP_03973363.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] gi|227180927|gb|EEI61899.1| response regulator [Corynebacterium glucuronolyticum ATCC 51866] Length = 212 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + V A G L + LT RE L+L Sbjct: 104 AGALGYLLKDAPPQELISGVRSAAEGDTTLSPVVANRLMTRVRGPKTTLTPRELEVLRLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EI L LS TV ++L KLDA +R A+A A G + Sbjct: 164 AAGSSNKEIGRVLFLSEATVKSHLVHIYDKLDARSRTAAVAAAREQGVL 212 >gi|58580891|ref|YP_199907.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425485|gb|AAW74522.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae KACC10331] Length = 277 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 70/190 (36%), Gaps = 19/190 (10%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLL 113 GD+ ++ E D P +W + + + R Sbjct: 88 GDMQHVWCEHGYYQHDPVQQRATRRNTPFVWSYRTDGDCAGVEYVGGQHRQVTRYLCDSG 147 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---------GACYQVITDFLELF 164 G+ P+ L + F++ +A E + A +Q L Sbjct: 148 MGTGVTVPLHLPGG--AFATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDP 205 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A Sbjct: 206 QERRCHHIPLTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEA 265 Query: 225 IAKAIRFGYI 234 + + + + + Sbjct: 266 VVRGMHYRLL 275 >gi|291301939|ref|YP_003513217.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571159|gb|ADD44124.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR--------SSAAR 172 L G++ L + + G +++ LE F R ++ Sbjct: 99 LRAGAAGFLAKDVPAEDLVAAIRSVSSGEAVVAPRILRRLLEKFVDRLPEPDGATPASLE 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L G ++ EIA++L +S TV ++G KL +R+QA+ A G Sbjct: 159 VLTEREREVLILVAKGMSNTEIAKELTVSETTVKTHVGHVLTKLGVRDRVQAVVLAYETG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|224476907|ref|YP_002634513.1| putative two-component response regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222421514|emb|CAL28328.1| putative two-component response regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 209 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + G + + +E K+ L+ RET L+ Sbjct: 100 GADGYEMKDVEPDELIQSIHKVLEGNKIIHPEVQKVIEDVAKKPHHINKLSNRETEVLKE 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIAE L +S TV ++ KL +R QA A+ I Sbjct: 160 MAKGKTNKEIAEALYVSEKTVKTHVSHIFSKLQVTDRTQAAIYAMENKLI 209 >gi|190894575|ref|YP_001984868.1| putative LuxR family transcriptional regulator [Rhizobium etli CIAT 652] gi|190700236|gb|ACE94318.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|327189865|gb|EGE57000.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CNPAF512] Length = 265 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 44/180 (24%), Positives = 65/180 (36%), Gaps = 26/180 (14%) Query: 74 DDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLP----FAGIAFPVRLGFHK 128 D P W +T+I+ L G+ PV + Sbjct: 80 DPVQQVALRTSAPFFWNYDPDADTLIKGFMSEDTAPVTRYLSERDMSTGVTVPVHMPRG- 138 Query: 129 NGYVIFTSEFLMLANEVIIEA--------------HGACYQVITDFLELFKKRSSAARNL 174 Y T N+ A H A Y + K RS L Sbjct: 139 -DYATVTGIRFGRNNDFERHALRYIADFNLLAHVFHEAAYSLFDR-----KARSVGTVRL 192 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE CL+ + +GY+++EI+ + SV TV +L +A KL A NR QA+ +A + + Sbjct: 193 TERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRLL 252 >gi|297559326|ref|YP_003678300.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843774|gb|ADH65794.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 210 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCL 182 GY++ + LA V A G ++ ++R A L+ RE L Sbjct: 96 AGATGYLLKDTPRAELAEAVRAAARGETVLTGRLAGRLFTGMRRRGEPAAVLSPREVEVL 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +LA +G T+ I L +S TV +L KL +R A+++AIR G + Sbjct: 156 RLASEGRTNAAIGRALHISPTTVKTHLMRVYDKLGVGDRTSAVSQAIRRGLL 207 >gi|253573655|ref|ZP_04850998.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847183|gb|EES75188.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 215 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFT---SEFLMLANEVIIEAHGACYQVITDFLELF---KKRSSAARNLTER 177 L GY++ +L + + ++ L+ F ++ S LT R Sbjct: 95 LKQGAQGYLLKNLEPGTWLEYLRAIASDEAPLSSELALRILQEFPVNRRTSGEQPPLTAR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G T+ EIA L +S TV +L + KL NR+Q A+ G+I Sbjct: 155 EREILGWVAQGMTNREIAGVLHISDQTVKNHLKNILQKLHLENRVQLTRYALEQGWI 211 >gi|220907344|ref|YP_002482655.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863955|gb|ACL44294.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 209 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 2/110 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + + G Y L ++ SS LTERE L Sbjct: 99 LQAGARGYLLKSVSREELIDGIKQVYAGRKYIPAEVGARLAERMSSP--QLTERERQVLM 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +G +++EIA L +S T+ ++ KLD +R QA+ A++ G Sbjct: 157 LMCEGKSNQEIALTLQISEGTIKFHVNGILRKLDVCDRTQAVLVALKRGM 206 >gi|294811706|ref|ZP_06770349.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324305|gb|EFG05948.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 253 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF--------KKRSSAAR 172 L +G+++ + L + + A G + L+ + + Sbjct: 126 LRAGASGFLLKDAPAHELVQAIRVVAAGEAMLAPSITRRLLDKYAGHLPSGEEPVPDTLN 185 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT+RE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 186 SLTDREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 245 Query: 233 YI 234 + Sbjct: 246 LV 247 >gi|163760319|ref|ZP_02167402.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] gi|162282718|gb|EDQ33006.1| putative transcriptional regulator protein, LuxR family [Hoeflea phototrophica DFL-43] Length = 208 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 40/126 (31%), Positives = 60/126 (47%), Gaps = 3/126 (2%) Query: 110 GGLLPFAGIAFPVRLGFH-KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 + + P+ + G ++ + L +EV + A+ A V + E+ Sbjct: 84 ARCGSKSAVVVPLHTAVGKRFGLILLRNRERPLHSEVALIAYDASI-VFQRYFEVVLSLD 142 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S L+ERE + +G TS EIA LGLS HTVN+Y+ + KL VNR Q +A A Sbjct: 143 S-ISGLSEREIQIVSWTSEGKTSSEIAIILGLSEHTVNSYIAAILRKLQVVNRAQMVASA 201 Query: 229 IRFGYI 234 +R G I Sbjct: 202 LRNGLI 207 >gi|256389407|ref|YP_003110971.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256355633|gb|ACU69130.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 222 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 GY++ + L V A G +++T + + LTERE Sbjct: 106 AGATGYLLKDAPREDLIRAVRAAAAGQPVLAPTVAQRLMTRVQTPLAEPAPPGDALTERE 165 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G T+ E A KL +S TV +L A K +R A+A+A + G + Sbjct: 166 LEVLRLVASGTTNRETARKLFISEATVKTHLLHAYAKFGVRDRAAAVAEAYKRGLL 221 >gi|225872928|ref|YP_002754385.1| DNA-binding response regulator, LuxR family [Acidobacterium capsulatum ATCC 51196] gi|225794168|gb|ACO34258.1| DNA-binding response regulator, LuxR family [Acidobacterium capsulatum ATCC 51196] Length = 213 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 4/115 (3%) Query: 122 VRLGF--HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 + GY++ + LA +V A G ++ + ++ L+ERE Sbjct: 99 IHTAISLGVRGYLLKGIDGAALAEQVRHVARGGSC--LSPEAAEKLTQYITSKKLSEREL 156 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G +++EIA L ++ +TV ++ KL A +R QA+ AI+ G + Sbjct: 157 EVLSLISKGKSNKEIAGLLFVTDNTVKMHVKKILSKLQANDRTQAVVIAIQRGLL 211 >gi|194365353|ref|YP_002027963.1| LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348157|gb|ACF51280.1| transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 234 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 72/235 (30%), Gaps = 7/235 (2%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + + L +++ SL E+ L + + ++ + L+ ++ E Sbjct: 4 LVQALLGLERADSLTEVGAILRSVAAPLGYDRVLVFATGTGLERDAQRVYWIEGDWLGDG 63 Query: 61 SGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 S + H P W + Q+ + G G+ Sbjct: 64 SDTDLARYLHAC--PVNRHVLDSDAPFFWSK--RQGARGERYQVVKQPRGD--GLHGLQV 117 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERET 179 PV G + F + + + L + + L+ RE Sbjct: 118 PVFGTTGLEGAISFAGAAVDASARARLLLEAVATAAFRTARRLAEAPAELPVGALSARER 177 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G EIA LGLS TV +L A +L QA+ A R G I Sbjct: 178 EVLRWVAAGRRQAEIAATLGLSARTVENHLRRARQRLGVATTAQAVRAASRRGEI 232 >gi|159900552|ref|YP_001546799.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893591|gb|ABX06671.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 250 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 17/155 (10%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--- 151 TV + + V L + GI +R Y+ T ++ L N V + G Sbjct: 86 RTVKLNHPNIGVILLSDINDQEGIVKSLR--AGVAAYLSRTIDWDDLINSVDMVRSGNYP 143 Query: 152 ----------ACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLG 199 V+ F +L + ++ RE L+L G T++EIA +L Sbjct: 144 INDLVLNTPAVAAAVMDSFRQLTMDTHTEHVYSPMSPREIEVLELVAAGQTNKEIAARLE 203 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV ++ S KL +R QA+ A++ G+I Sbjct: 204 ISNQTVKNHISSILRKLAVNDRTQAVVFALQRGWI 238 >gi|21243715|ref|NP_643297.1| AhyR/AsaR family transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306] gi|21109298|gb|AAM37833.1| transcriptional regulator ahyR/asaR family [Xanthomonas axonopodis pv. citri str. 306] Length = 254 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 67/188 (35%), Gaps = 15/188 (7%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLL 113 GD+ ++ E D P +W + + + R Sbjct: 65 GDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYRTDGHCPGVEYVGGQHRQVTRYLCDSG 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KK 166 G+ P+ L + + EA + ++ + ++ Sbjct: 125 MGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELLDPQE 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+A Sbjct: 185 RRCHHIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVA 244 Query: 227 KAIRFGYI 234 + + + + Sbjct: 245 RGMHYRLL 252 >gi|328882017|emb|CCA55256.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 237 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 6/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN---LTER 177 L +G+V+ +A V + A G + + + S+AA LT R Sbjct: 115 LSAGASGFVLKRLPVRQIAEAVRVVAAGEAILFPATLRRMVAVRPLDSAAALPRAALTGR 174 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L+L G ++ EIAE L +S+ TV ++G+ KL A NR A+ A G + Sbjct: 175 EEEVLRLMATGLSNPEIAESLTVSLETVKTHVGNVLTKLGAQNRTHAVVIAYESGLVV 232 >gi|307711412|ref|ZP_07647828.1| response regulator [Streptococcus mitis SK321] gi|307616785|gb|EFN95969.1| response regulator [Streptococcus mitis SK321] Length = 210 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTER 177 PV L GY++ TS L + V A G A Q ++ +E + +LT R Sbjct: 90 MPV-LNAGARGYMLKTSSADELLHAVRKVAAGELAIEQEVSKKVEYHRNHIELHEDLTAR 148 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQL GY ++ IA++L +S+ TV ++ + KL+ +R QA + + + Sbjct: 149 ERDVLQLIAKGYENQRIADELFISLKTVKTHVSNILAKLEVSDRTQAAVYSFQHHLV 205 >gi|271963471|ref|YP_003337667.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506646|gb|ACZ84924.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 205 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S +L+ RE + L Sbjct: 95 AGAAGYLLKDAPTDDLLDAIRAVARGETILAPPVAARLVTRMRSPRASLSPREVEIVLLV 154 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ +IA +L +S TV ++L KL+ NR A+ A R G + Sbjct: 155 ADGLSNRQIARELFISEATVKSHLVHIYAKLEVDNRTGAVKVARRRGLL 203 >gi|170769400|ref|ZP_02903853.1| regulatory protein SdiA [Escherichia albertii TW07627] gi|170121724|gb|EDS90655.1| regulatory protein SdiA [Escherichia albertii TW07627] Length = 228 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 62/181 (34%), Gaps = 7/181 (3%) Query: 61 SGDIPNILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGI 118 + P + Y + + L P + + Q G+ Sbjct: 48 YTNYPEAWVRYYQEKNFLAIDPALNPENFRQGHLLWNDDLYREAQPLWEAARAHGLRRGV 107 Query: 119 AFPVRLGFHKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAAR-N 173 L G++ F+ +E+ ++ + + + L + + Sbjct: 108 THYFMLPNRALGFLSFSRSSTREIPVPGDELQLKMQLLVRESLMALMRLNDEMVMTPEMH 167 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++RE L+ +G TS EIA L +S +TVN + + K++A N+ Q A G Sbjct: 168 FSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQKKINAPNKTQVACYAAATGL 227 Query: 234 I 234 I Sbjct: 228 I 228 >gi|116873879|ref|YP_850660.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742757|emb|CAK21881.1| DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] Length = 228 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS------- 169 L GY++ + L V I +G Y ++I ++ L +S Sbjct: 95 LRAGAVGYLLKEMDAQELVEAVKIVENGGAYIHPRVAIKLIREYRHLASTNTSQGVYGYQ 154 Query: 170 ------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQL DG ++ I E L +S TV ++ S K+ +R Q Sbjct: 155 QPEVKMPLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQ 214 Query: 224 AIAKAIRFGYI 234 A+ AI+ G++ Sbjct: 215 AVVTAIKHGWV 225 >gi|325290865|ref|YP_004267046.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324966266|gb|ADY57045.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 212 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 55/114 (48%), Gaps = 5/114 (4%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETSC 181 GY++ E + ++ G + T L+ F +K S+ L+ERE Sbjct: 98 GAQGYLLKNMEPEYWLDYIMSIVQGEAPISRNLATKILQEFSIQKDDSSDNKLSEREKEV 157 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +QL G ++++I EKL ++ TV +L + KL NR+Q +A A + G++ Sbjct: 158 VQLVSQGLSNKDIGEKLHITESTVKNHLRNILAKLHLRNRVQLVAFAYKNGHLS 211 >gi|256396518|ref|YP_003118082.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362744|gb|ACU76241.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 228 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 14/122 (11%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKK-------RSSAA 171 +G+++ + + N V A G +I F E + R + Sbjct: 102 AGASGFLLKDAPPAEMVNGVRTVARGESLLAPAVTRTLIGRFAERLRPGDPARAAREAVT 161 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT RE +L +G ++ EIA L ++ TV Y+ KLD +R+QA+ A R Sbjct: 162 RTLTPRELEVFELIAEGLSNAEIAASLFITPETVKTYVSRILTKLDLRDRVQAVVLAYRI 221 Query: 232 GY 233 G Sbjct: 222 GL 223 >gi|159897512|ref|YP_001543759.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890551|gb|ABX03631.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 213 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETS 180 L GYV+ + L + + G Y +I +L + +LT+RE Sbjct: 98 LRAGATGYVLKRAAATELVSAIRAVQRGDSYLDPALIAKLNQLGDSDTVKLADLTDRELE 157 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G T+ +IA +L +SV TV ++ + KLD +R + AIR G I Sbjct: 158 VLKLVAEGLTNRQIAAQLVISVKTVQSHRTNIMEKLDLHDRTDLVKYAIRRGMI 211 >gi|314934049|ref|ZP_07841412.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] gi|313653160|gb|EFS16919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] Length = 209 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A+ V G +V+ KKR+ LTERE Sbjct: 95 LDAGVDSYILKTTSASDIADAVRKTDQGESVFEPEVLVKMRNRMKKRAELYEMLTEREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|302548366|ref|ZP_07300708.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302465984|gb|EFL29077.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTER 177 L +G++ + +A+ + + A G L R LT R Sbjct: 106 LEAGASGFIRKRAPAQQIAHAIRLVASGDSVLFPEAVARLTTGRPPRREAAARVAALTRR 165 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L+L +G T+++IAE L +S+ TV ++G+ KL A NR QA+ A G Sbjct: 166 EAEILRLMAEGLTNQQIAEVLTVSLETVKTHVGNVLTKLGAGNRTQAVILAFEAGL 221 >gi|205372705|ref|ZP_03225516.1| two-component response regulator [Bacillus coahuilensis m4-4] Length = 212 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAARNLTERET 179 L Y++ TS+ +A+ + HG +V + +K S LT RE Sbjct: 94 LEAGATSYMLKTSKASDIADAIRKT-HGGQSILEPEVTGKMMSRMRKPSHPHEELTNREM 152 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L +G T+ EI E L ++ TV ++ + KL +R QA+ A + + Sbjct: 153 EILLLMAEGKTNSEIGEDLFIAHKTVKTHVSNILSKLGVQDRTQAVIYAFQHSLVT 208 >gi|171909840|ref|ZP_02925310.1| NarL subfamily protein [Verrucomicrobium spinosum DSM 4136] Length = 216 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 Y++ L + + G + +E S + LT RE L+L Sbjct: 108 AGARAYLLKDGPREELVDTIRRVHRGETC-LAPSLVEKLAA-SVSNEPLTRREQEVLELL 165 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA L +S TV +L S KLD ++R +AIA A R G + Sbjct: 166 ARGRSNKEIASTLSISEPTVKTHLRSLFGKLDVLSRTEAIAVASRKGLV 214 >gi|269837643|ref|YP_003319871.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786906|gb|ACZ39049.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 234 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 16/124 (12%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------------ACYQVITDFLELFKKRSSAA-- 171 + Y + L + A G +V+ F EL + ++ Sbjct: 99 GASAYCTKDIDPAELVTVIRRVARGEYLINENVLSRPFVASRVLDQFRELAQIDEVSSGV 158 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G +++EIA L +S TV ++ S KL +R QA+ A+R Sbjct: 159 FSPLTPREVEILDCVARGNSNKEIARLLNISDQTVKNHITSILRKLAVNDRTQAVIYALR 218 Query: 231 FGYI 234 G+I Sbjct: 219 HGWI 222 >gi|84498193|ref|ZP_00996990.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84381693|gb|EAP97576.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 202 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 10/119 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELF---KKRSSAARNLT 175 +GY++ +A V + G Q+I +F L K ++A LT Sbjct: 80 AGASGYLLKDLPTEQIAESVRMAHTGQSMIPPHMASQLIAEFSRLSNEPPKEATAGPRLT 139 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L L G ++EIA +L +S +TV ++ + KL +R++A A+R I Sbjct: 140 ERELEVLGLVARGKANKEIATQLFISENTVKNHVRNILEKLQLHSRVEAALYAMRRNLI 198 >gi|239638058|ref|ZP_04679017.1| response regulator protein VraR [Staphylococcus warneri L37603] gi|239596341|gb|EEQ78879.1| response regulator protein VraR [Staphylococcus warneri L37603] Length = 209 Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A V HG +V+ KKR+ LT+RE Sbjct: 95 LDAGVDSYILKTTSASDIAEAVRKTYHGESVFEPEVLVKMRNRMKKRAELYEMLTDREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|291299967|ref|YP_003511245.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569187|gb|ADD42152.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 214 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 4/116 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----KRSSAARNLTERET 179 L NG+++ + L + + A G L + + A LTERE Sbjct: 96 LRAGANGFLLKRTPPDDLLAGIRVVARGDALLFPAAVRRLAAGHTGRSTLDAAGLTEREA 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+L G ++ EIA +L LS TV ++ KL +R QA+ KA G++ Sbjct: 156 EVLRLMARGLSNAEIAARLFLSAETVKTHVAKILAKLRVRDRTQAVIKAYEAGFVS 211 >gi|325496964|gb|EGC94823.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii ECD227] Length = 240 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 13/231 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ +S +++ L L +++ F Y++ P + + Y Sbjct: 18 QEMASAEDVFQELQLQTQKLE---FDYYSLCVRHPVPFTRPKVAYYSTYPEAWVSYYQQH 74 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L N ++W + S Q G+ + L Sbjct: 75 NFLAIDPVLKPENFSQGHLLWDD-----ALFSEAQPLWDAARAHGLRRGVTQYLMLSNRA 129 Query: 129 NGYVIFTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQ 183 G++ + E + +E+ ++ + + L + + A ++RET L+ Sbjct: 130 LGFLSLSRMSAREGPIAHDELELKLQLLVRESLNVLARLQHEMVMTPAMRFSKRETEILR 189 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 190 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGII 240 >gi|227489040|ref|ZP_03919356.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] gi|227090985|gb|EEI26297.1| response regulator [Corynebacterium glucuronolyticum ATCC 51867] Length = 212 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G L + LT RE L+L Sbjct: 104 AGALGYLLKDAPPQELIAGVRSAAEGDTTLSPVVANRLMTRVRGPKTTLTPRELEVLRLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EI L LS TV ++L KLDA +R A+A A G + Sbjct: 164 AAGSSNKEIGRVLFLSEATVKSHLVHIYDKLDARSRTAAVAAAREQGVL 212 >gi|329948078|ref|ZP_08294979.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523217|gb|EGF50318.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 244 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 14/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF-----------KKRSS 169 L +G+++ + LA + A G +V LE+F + Sbjct: 119 LRAGASGFLLKDTRPTELAEAIRTVASGEAVVSPRVTQRMLEMFAPSLPNSGAPTQASDP 178 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT RE L L G ++ EIA+ L +S TV ++G+ KLD +R+QA+ A Sbjct: 179 RIDSLTPREKEILVLMSQGLSNAEIADHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVAY 238 Query: 230 RFGYIC 235 G + Sbjct: 239 ETGLMA 244 >gi|322390996|ref|ZP_08064501.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321142300|gb|EFX37773.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 210 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L GY++ TS + V A G A ++ ++ K + +LT RE Sbjct: 91 PV-LDAGAKGYILKTSSATEILQAVRKVAKGEFAIETEVSQKVKSRKNHAELHDDLTARE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 150 RDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFRHHLV 205 >gi|312199008|ref|YP_004019069.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311230344|gb|ADP83199.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 239 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 11/119 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR----NL 174 GY++ + +A+ V HG +++ +F + + R +L Sbjct: 117 AGAVGYLLKSIPPHEVADAVRSVHHGQSLISPSMASKLMAEFASIARGTDDRPRLHTPHL 176 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+L +G + EIA KL +S +TV ++ + KL +R++A+ A+R G Sbjct: 177 TARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 235 >gi|302559483|ref|ZP_07311825.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302477101|gb|EFL40194.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 220 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L +G+++ + LA V + A G ++I +F L + + R Sbjct: 94 LRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDARPRTPLRQRVG 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA +L ++ TV ++G VKL +R QA A G Sbjct: 154 ELTERETEVLALIAQGLSNAEIAVRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|19553213|ref|NP_601215.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62390849|ref|YP_226251.1| response regulator [Corynebacterium glutamicum ATCC 13032] gi|21324779|dbj|BAB99402.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41326187|emb|CAF20350.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] Length = 210 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 49/110 (44%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ S L V A G ++ + ++ L+ RE L L Sbjct: 101 SAGAVGYLLKDSSPEDLIAGVRDAARGESVLSKQVASKIMGRMNNPMTALSAREIEVLSL 160 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI +KL L+ TV +++G KLD +R A+A+A + G I Sbjct: 161 VAQGQSNREIGKKLFLTEATVKSHMGHVFNKLDVTSRTAAVAEARQRGII 210 >gi|76667926|dbj|BAE45354.1| two component response regulater [Bacillus subtilis] Length = 229 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L GY++ + L V + A G Y ++ +F L SA Sbjct: 96 LKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEV 155 Query: 174 ----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQ+ DG ++ I E L +S V ++ + K++ +R Q Sbjct: 156 YPEIRRPLHILTRRECEVLQMLADGKSNRGIGESLFISEKAVKNHVSNILQKINVNDRTQ 215 Query: 224 AIAKAIRFGYI 234 A+ AI+ G++ Sbjct: 216 AVVVAIKNGWV 226 >gi|320532198|ref|ZP_08033064.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135576|gb|EFW27658.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 245 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 15/127 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR-------- 172 L +G+++ + LA + A G ++ LE+F ++ Sbjct: 119 LRAGASGFLLKDTRPTELAEAIRTVASGEAVVSPRITQRMLEMFAASLPSSDAPAQPSSD 178 Query: 173 ----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE L L G ++ EIA L +S TV ++G+ KLD +R+QA+ A Sbjct: 179 PRIDSLTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLTKLDVRDRVQAVVVA 238 Query: 229 IRFGYIC 235 G + Sbjct: 239 YETGLMA 245 >gi|319648461|ref|ZP_08002677.1| YvfU protein [Bacillus sp. BT1B_CT2] gi|317389540|gb|EFV70351.1| YvfU protein [Bacillus sp. BT1B_CT2] Length = 197 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 4/108 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + +GY++ E LA+ + G T EL LTERE L+LA Sbjct: 94 NVHGYLLKDGEIDDLADAIRKCTEGKR----TFSPELTFNAVRETNPLTEREQDILRLAY 149 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EI+E+L LS TV Y+ KLDA NR++A A G+I Sbjct: 150 IGKTTKEISEELFLSSGTVRNYISEIMQKLDAKNRMEAARIAEGKGWI 197 >gi|229012624|ref|ZP_04169797.1| Response regulator receiver [Bacillus mycoides DSM 2048] gi|228748647|gb|EEL98499.1| Response regulator receiver [Bacillus mycoides DSM 2048] Length = 215 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 14/123 (11%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLE-------LFKKRSSAA 171 GY++ +E + + + GA Q T F++ L + Sbjct: 92 AGAVGYILKDTETEEMLDSIRSMNRGAMIYNSTTANQAFTQFIKYDNNDYNLAGEELEYT 151 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE LQL G + EIA+ L +S TV ++ + KLD +R QA AIR Sbjct: 152 ETLTKREIDVLQLLAYGKQNHEIAKILYVSEGTVKTHIHNILQKLDVTDRTQAAVMAIRK 211 Query: 232 GYI 234 + Sbjct: 212 KIV 214 >gi|27468487|ref|NP_765124.1| two-component response regulator [Staphylococcus epidermidis ATCC 12228] gi|57867340|ref|YP_188991.1| DNA-binding response regulator VraR [Staphylococcus epidermidis RP62A] gi|251809910|ref|ZP_04824383.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282874566|ref|ZP_06283451.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293367802|ref|ZP_06614451.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|81674015|sp|Q5HN50|VRAR_STAEQ RecName: Full=Response regulator protein vraR gi|81842704|sp|Q8CNP9|VRAR_STAES RecName: Full=Response regulator protein vraR gi|27316034|gb|AAO05168.1|AE016749_114 two-component response regulator [Staphylococcus epidermidis ATCC 12228] gi|57637998|gb|AAW54786.1| DNA-binding response regulator VraR [Staphylococcus epidermidis RP62A] gi|251806575|gb|EES59232.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281296705|gb|EFA89214.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291318141|gb|EFE58538.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329726870|gb|EGG63328.1| response regulator protein VraR [Staphylococcus epidermidis VCU144] gi|329734717|gb|EGG71023.1| response regulator protein VraR [Staphylococcus epidermidis VCU045] gi|329734803|gb|EGG71108.1| response regulator protein VraR [Staphylococcus epidermidis VCU028] Length = 209 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A+ V G +V+ KKR+ LTERE Sbjct: 95 LDSGVDSYILKTTSASDIADAVRKTYEGESVFEPEVLVKMRNRMKKRAELYEMLTEREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|296877022|ref|ZP_06901064.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] gi|296431966|gb|EFH17771.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] Length = 210 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L GY++ TS + + V A G A ++ +E K + +LT RE Sbjct: 91 PV-LDAGAKGYILKTSSATEILHAVRKVAKGEFAIETEVSQKVESRKNHAELHDDLTARE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 150 RDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFRHHLV 205 >gi|269925421|ref|YP_003322044.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789081|gb|ACZ41222.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 224 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L GY++ + + N V A+G +V++ F + + LT+ Sbjct: 103 LQAGAAGYILKDAHADEVVNAVKAVANGESVLAPSIAKKVLSRFTSPSTQPEHPSPVLTD 162 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+LA G +++ IA++L LS TV +L + K +R +A+ A++ G I Sbjct: 163 RELDVLRLAAKGESNKAIAQQLHLSPRTVQVHLSNIFNKFGVASRTEAVLHALKLGLI 220 >gi|84622824|ref|YP_450196.1| AhyR/AsaR family transcriptional regulator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188578132|ref|YP_001915061.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae PXO99A] gi|84366764|dbj|BAE67922.1| transcriptional regulator ahyR/asaR family [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522584|gb|ACD60529.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae PXO99A] Length = 254 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 70/190 (36%), Gaps = 19/190 (10%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLL 113 GD+ ++ E D P +W + + + R Sbjct: 65 GDMQHVWCEHGYYQHDPVQQRATRRNTPFVWSYRTDGDCAGVEYVGGQHRQVTRYLCDSG 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---------GACYQVITDFLELF 164 G+ P+ L + F++ +A E + A +Q L Sbjct: 125 MGTGVTVPLHLPGG--AFATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDP 182 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A Sbjct: 183 QERRCHHIPLTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEA 242 Query: 225 IAKAIRFGYI 234 + + + + + Sbjct: 243 VVRGMHYRLL 252 >gi|326772328|ref|ZP_08231613.1| two-component system response regulator [Actinomyces viscosus C505] gi|326638461|gb|EGE39362.1| two-component system response regulator [Actinomyces viscosus C505] Length = 240 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 15/127 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF------------KKRS 168 L +G+++ + LA + A G ++ LE+F Sbjct: 114 LRAGASGFLLKDTRPTELAEAIRTVASGEAVVSPRITQRMLEMFAGSLPSSEAPAQSSSD 173 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE L L G ++ EIA L +S TV ++G+ KLD +R+QA+ A Sbjct: 174 PRIDSLTPREKEILVLMSQGMSNAEIAAHLVVSATTVKTHVGNVLAKLDVRDRVQAVVVA 233 Query: 229 IRFGYIC 235 G + Sbjct: 234 YETGLMA 240 >gi|320652407|gb|EFX20705.1| DNA-binding transcriptional activator SdiA [Escherichia coli O157:H- str. H 2687] Length = 240 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 10/207 (4%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIAPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + + Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFNEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + K++A N+ Q A G I Sbjct: 214 HQKNMQKKINAPNKTQVACYAAATGLI 240 >gi|297158565|gb|ADI08277.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 218 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 13/127 (10%) Query: 122 VRLG--FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKK----RS 168 V +G+++ L + V + A +++ DF+ ++ RS Sbjct: 90 VHDALHAGASGFLLKDVRRDDLVHAVRVVTAGDSLLAPSVARRLVADFVRRPRETAAPRS 149 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE LQL G G ++ EIA +L +S HTV ++ + KL +RIQA+ A Sbjct: 150 DRLAVLTARERETLQLLGRGLSNAEIAAELVVSEHTVKTHVSNVLTKLGLRDRIQAVICA 209 Query: 229 IRFGYIC 235 G + Sbjct: 210 YETGLVT 216 >gi|52082580|ref|YP_081371.1| CheY-like [Bacillus licheniformis ATCC 14580] gi|52787980|ref|YP_093809.1| YvfU [Bacillus licheniformis ATCC 14580] gi|52005791|gb|AAU25733.1| CheY-like [Bacillus licheniformis ATCC 14580] gi|52350482|gb|AAU43116.1| YvfU [Bacillus licheniformis ATCC 14580] Length = 200 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 4/108 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + +GY++ E LA+ + G T EL LTERE L+LA Sbjct: 97 NVHGYLLKDGEIDDLADAIRKCTEGKR----TFSPELTFNAVRETNPLTEREQDILRLAY 152 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EI+E+L LS TV Y+ KLDA NR++A A G+I Sbjct: 153 IGKTTKEISEELFLSSGTVRNYISEIMQKLDAKNRMEAARIAEGKGWI 200 >gi|4416228|gb|AAD20272.1| regulator [Streptomyces arenae] Length = 202 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 39/106 (36%), Positives = 52/106 (49%), Gaps = 3/106 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 GY++ + LA + A G Q + D F LTERE+ L LA +G Sbjct: 99 FGYLLKDAPPSELAAAIRKVADG---QRVIDTRLAFTVWQRGDHPLTERESDVLSLASEG 155 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIA +L L+V TV YL SA KL A NR+ A+ A G+I Sbjct: 156 AEASEIAAQLHLAVGTVRNYLSSAVTKLGARNRLDAVRIARDAGWI 201 >gi|333026466|ref|ZP_08454530.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332746318|gb|EGJ76759.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 212 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA---RN 173 L +G+++ + L V + A G ++I DF A + Sbjct: 87 LRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFARQRPAPGKPALRLKA 146 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L L G ++ EIAE L L+ TV ++ KL +R QA+ A G Sbjct: 147 LTERETEVLTLVARGRSNAEIAESLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESGL 206 Query: 234 IC 235 + Sbjct: 207 VA 208 >gi|296140566|ref|YP_003647809.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296028700|gb|ADG79470.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 218 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAAR---N 173 L +G+++ + L V + A ++I + +R A Sbjct: 95 LRVGASGFMLKDAPAEELVRAVRVVHEGQSLLAPSVTRRMIAEVTAARSRRRPAPAELGT 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ G ++ EIAE L +S TV ++ KL +R QA+ A G Sbjct: 155 LTPREREVLEAVAAGRSNAEIAETLFVSEQTVKTHVSKVLQKLGLRDRAQAVVYAYETGV 214 Query: 234 IC 235 + Sbjct: 215 VT 216 >gi|88798765|ref|ZP_01114348.1| two-component system regulatory protein [Reinekea sp. MED297] gi|88778528|gb|EAR09720.1| two-component system regulatory protein [Reinekea sp. MED297] Length = 224 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 13/122 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR------ 172 G+++ L + + G +VI F EL K+ S Sbjct: 103 AGARGFLLKDVSLEALVEAIDTVSSGDTLIQPAVTERVIKGFTELQKEGQSKVEKEPVQD 162 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L GY+++EI+ + S T+ ++ + KL +R +A+ KA+ G Sbjct: 163 PLTQREIEILRLMAGGYSNKEISRAIFKSEGTIKNHVSNILAKLGVRDRTRAVLKALELG 222 Query: 233 YI 234 I Sbjct: 223 VI 224 >gi|310639866|ref|YP_003944624.1| transcriptional regulatory protein degu (protease production enhancerprotein) [Paenibacillus polymyxa SC2] gi|309244816|gb|ADO54383.1| Transcriptional regulatory protein DegU (Protease production enhancerprotein) [Paenibacillus polymyxa SC2] Length = 217 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKR--SSAARNLTE 176 +GY++ ++ L + A G+ Y ++++++L+ K+ + +L+E Sbjct: 97 AGASGYILKSAPHEELLAAIQSVAEGSAYLYPNATKRLMSEYLDKIKQEGIAGPYESLSE 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L GY ++EIAE L +SV TV ++ + KL+ R + + A++ G + Sbjct: 157 REKEILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLNLKTRPELVKFALKKGLL 214 >gi|188990738|ref|YP_001902748.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|167732498|emb|CAP50692.1| transcriptional regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 272 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 67/192 (34%), Gaps = 19/192 (9%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLPF-- 115 D+ N+ E D P +W + T + G V + + Sbjct: 79 DDMHNVWCEHGYYQNDPVQQRATRRTTPFVWSYRTEGRTEGRTEGVEYVGHQHRQVTRYL 138 Query: 116 ------AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF----- 164 G+ P+ L + EA + ++ + Sbjct: 139 CDSDMGTGVTVPLHLPGGAFATFSAAVNATQAEAPRLAEAQLPPFLLLAHAFQARAQELL 198 Query: 165 --KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++R LT RE CLQ + G T++ IA L S TVN +L SA KL A NR+ Sbjct: 199 DPQERRCHHIALTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRV 258 Query: 223 QAIAKAIRFGYI 234 +A+ + + + + Sbjct: 259 EAVVRGMHYRLL 270 >gi|56421574|ref|YP_148892.1| hypothetical protein GK3039 [Geobacillus kaustophilus HTA426] gi|56381416|dbj|BAD77324.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 391 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 53/226 (23%), Positives = 84/226 (37%), Gaps = 25/226 (11%) Query: 18 SPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFL 77 R L Q + + A+ +D + Q+L EL + + + + E Sbjct: 181 FSRCALFQ-FVNQESTAIGLHGHGVDNGQIQRLRVELDSIPMLKESVGKLKAEV------ 233 Query: 78 FHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN-------- 129 H PI V +S Q + + PV + Sbjct: 234 -HEFRHFRPIY--------VPRASEQFPRLYVDLFGLASLVIVPVYVPTEGRMIGGVVLD 284 Query: 130 -GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G F + L ++ A ++ K+ A +L+ RE L+L DG Sbjct: 285 RGPGRFFAVDRRLFPALMKFGQSAGELLLKWIKAPKKEWEGRAESLSPREIEILKLLADG 344 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ E A +L LS TV Y+ SA KL+A NR +A+AKA+R G I Sbjct: 345 ASTLEAACQLYLSEFTVRDYISSALRKLNAKNRTEAVAKALRLGLI 390 >gi|282864347|ref|ZP_06273403.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560834|gb|EFB66380.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 223 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELF----KKRSSAAR 172 L +G+++ + L + + A G +++ + + + A Sbjct: 97 LRAGASGFLLKDAPAHELVQAIRVVAAGEAMLAPSITRRLLDKYADHLPSGEEPVPDALH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLRLRDRVQAAVYAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|271969975|ref|YP_003344171.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513150|gb|ACZ91428.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 221 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L +G+++ +E L + + + A G ++I +F K+ L Sbjct: 96 LRAGASGFLVKDTEPAELIHGIKVVARGDALIAPSVTRRLIAEFAGRVKRPEPGPEFNGL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L L G +++EIA +L LS T ++ KL A +R Q + A G + Sbjct: 156 TEREREVLTLVAGGLSNDEIAARLVLSPATAKTHVSRIMTKLHARDRTQLVVLAYEAGVV 215 Query: 235 C 235 Sbjct: 216 T 216 >gi|37524335|ref|NP_927679.1| hypothetical protein plu0320 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783758|emb|CAE12615.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 242 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 49/219 (22%), Positives = 81/219 (36%), Gaps = 21/219 (9%) Query: 29 KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPI- 87 K F+L+++ FP + + +NY D+ D L P+ Sbjct: 32 KISGFSLFSLLLKARFPISNREVYFFNNYHESWRDLYIEKKYWMIDPVL-----NFRPVP 86 Query: 88 -----IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 IW + +S+GQ + +GI F + G + + Sbjct: 87 PSFSKIW---DLDFFSKSNGQELWYVNQKYGFRSGITFGLPAFSGTYGIFSVAGKDGPID 143 Query: 143 NEVIIEAHGACYQVITDFLELFKKRSS-------AARNLTERETSCLQLAGDGYTSEEIA 195 NE + + G V + + + + RE L+ DG TS EI+ Sbjct: 144 NETMYKCSGEILGVYIRIIRYLTSHTKYLQSFYIDETSFSNRELEVLRYTADGMTSIEIS 203 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + ++ TV+ +L + KLD N+ QAIAKA GYI Sbjct: 204 STICVTKSTVDFHLMNIVKKLDCKNKFQAIAKAALLGYI 242 >gi|152965947|ref|YP_001361731.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151360464|gb|ABS03467.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 230 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA--------- 171 L +G+++ ++ L + + I A G +V+ L+LF + Sbjct: 94 LRSGASGFLVKSARPTELVDAIRIVASGSSVVAPRVVRRMLDLFAPQFPTTAGEARDDGL 153 Query: 172 ----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 R+LT RE L+ +G ++ EIAE+L LS+ TV ++G+ KL +R+QA+ Sbjct: 154 DHRLRSLTPRELDVLRCLAEGSSNAEIAERLVLSLTTVKTHVGNILAKLGLRDRVQAVIA 213 Query: 228 AIRFGYI 234 A FG + Sbjct: 214 AYEFGLV 220 >gi|20804002|emb|CAD31579.1| PROBABLE TRANSCRIPTIONAL REGULATOR PROTEIN [Mesorhizobium loti R7A] Length = 241 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 73/229 (31%), Gaps = 13/229 (5%) Query: 5 TLTGKKSSSLQ--ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 TL + S S+ + L FA ++ S D + +LI NY Sbjct: 7 TLLEQLSLSVDEVDFHNALASAAGAFDIPAFAYLSLVS--DRVTKPRLI---SNYHSGWT 61 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D + P W I + Q G+ P+ Sbjct: 62 SHYLRHQYERIDPVIEWARCSEYPFQWGPDFGHAGISTRQQQLFDEAAEFGICCGLTIPL 121 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTE 176 + F ++ L + E + +++ + +R + +LT Sbjct: 122 VDRRGGVAAMTFAADRLDPTFLRVAEKYEQALEIMAMCFHIGVRRKLSCGLAVDGVSLTP 181 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RE CL+ G ++ EI LG+ T +L +A KL + QA+ Sbjct: 182 REYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230 >gi|15672873|ref|NP_267047.1| two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|12723822|gb|AAK04989.1|AE006323_4 two-component system regulator [Lactococcus lactis subsp. lactis Il1403] gi|326406436|gb|ADZ63507.1| two-component system regulator [Lactococcus lactis subsp. lactis CV56] Length = 209 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLT 175 FP L GY++ TS+ +A+ + A+G V + ++ +L+ Sbjct: 92 VFPA-LAAGAKGYILKTSQAADIASAIRKVANGEDVLSDAVKEKIAQQKHRKHELYDDLS 150 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L++ G +++EIA++L +S+ TV ++ + KL+ +R QA AI+ + Sbjct: 151 KRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHHLV 209 >gi|307324713|ref|ZP_07603919.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889595|gb|EFN20575.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLE-----LFKKRSSAA 171 L +G+++ + L + V + A G ++I DF S+ Sbjct: 99 LRAGASGFLLKDAPPADLISAVRVVAAGEALLAPSVTRRLIADFARQRPAPRRDGPSARR 158 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RET L+L G +++EIAE L L+ TV ++G KL +R QA+ A Sbjct: 159 SGLTPRETEVLELIARGLSNQEIAESLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYES 218 Query: 232 GYIC 235 G + Sbjct: 219 GLVT 222 >gi|281491392|ref|YP_003353372.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] gi|281375126|gb|ADA64642.1| Two-component response regulator [Lactococcus lactis subsp. lactis KF147] Length = 209 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLT 175 FP L GY++ TS+ +A+ + A+G V + ++ +L+ Sbjct: 92 VFPA-LAAGAKGYILKTSQAADIASAIRKVANGEDVLSDAVKEKIAQQKHRKHELYDDLS 150 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L++ G +++EIA++L +S+ TV ++ + KL+ +R QA AI+ + Sbjct: 151 KRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHHLV 209 >gi|242241722|ref|ZP_04796167.1| response regulator [Staphylococcus epidermidis W23144] gi|242234812|gb|EES37123.1| response regulator [Staphylococcus epidermidis W23144] Length = 209 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A+ V G +V+ KKR+ LTERE Sbjct: 95 LDSGVDSYILKTTSASDIADAVRKTYEGESVFEPEVLVKMRNRMKKRAELYEMLTEREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|294101416|ref|YP_003553274.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] gi|293616396|gb|ADE56550.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] Length = 211 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ TS L + G Y + ++ + R +L+ RE L Sbjct: 95 LRAGARGFILKTSTPQDLIRAIQTVVQGGLY-LDSEVATVVGDRELVPESLSAREREVLV 153 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 LA G +S+E+A +L +S TV +L S KL A N+ +A+ A+++G + Sbjct: 154 LASKGLSSKEVAAELFISERTVQTHLASIYDKLGARNKTEALLLALKYGVVT 205 >gi|288904712|ref|YP_003429933.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|306830715|ref|ZP_07463880.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977633|ref|YP_004287349.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731437|emb|CBI12989.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] gi|304427223|gb|EFM30330.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177561|emb|CBZ47605.1| two-component response regulator [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 214 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + A G A + ++ + +LT RE L+ Sbjct: 99 AGAKGYMLKTSSAAEILNAIQKVARGELAIETEVDKKIKAHDMQPELHEDLTARERDILR 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 159 LLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFKHHLV 209 >gi|302545751|ref|ZP_07298093.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302463369|gb|EFL26462.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L +G+++ + L + V + A G V + F ++ A R Sbjct: 99 LRAGASGFLLKDAPPADLISAVRVVAAGEALLAPSVTRRLIAEFARQRPAPRRNSSLLRR 158 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RET L+L G +++EIAE L L+ TV ++G KL +R QA+ A Sbjct: 159 SGLTPRETEVLELIARGLSNQEIAESLVLAEQTVKTHIGRVLAKLGLRDRAQAVIFAYES 218 Query: 232 GYIC 235 G + Sbjct: 219 GLVT 222 >gi|16125402|ref|NP_419966.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|221234145|ref|YP_002516581.1| two-component response regulator [Caulobacter crescentus NA1000] gi|13422468|gb|AAK23134.1| DNA-binding response regulator [Caulobacter crescentus CB15] gi|220963317|gb|ACL94673.1| two-component response regulator [Caulobacter crescentus NA1000] Length = 201 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + GY++ +LA V A G + + E + LT+RE L+ Sbjct: 94 MDAGVKGYLLKDGPSSVLAAAVRTIAAGG-RAIAPELSE--AVWDAEPDPLTDREREILR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA +G ++++IA+ L LS TV YL A KL A NR++A A G++ Sbjct: 151 LAEEGRSNKDIADVLDLSPGTVRNYLSEAAQKLGAANRVEAGRIARSNGWL 201 >gi|289668073|ref|ZP_06489148.1| LuxR family transcriptional regulator [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 230 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 67/190 (35%), Gaps = 19/190 (10%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQSIQEET-----VIESSGQLSVRLEGGLL 113 GD+ ++ D P +W + + R Sbjct: 41 GDMQHVWCAHGYYQHDPVQQRATRRTTPFVWSYHTDGNCAGVEYVGGQHWQVTRYLCDSG 100 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELF------- 164 G P+ L + F+ + E + EA + ++ + Sbjct: 101 MGTGATVPLHLPGG--AFATFSGAIDTVDAEAPHLAEAQLLPFLLLAHAFQARAQELLDP 158 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A Sbjct: 159 QERRCHHIALTRRERECLQYSAKGLTSKNIAAALNRSTATVNLHLNSAARKLGARNRVEA 218 Query: 225 IAKAIRFGYI 234 + + + + + Sbjct: 219 VVRGMHYRLL 228 >gi|293491180|gb|ADE45144.1| transcriptional regulator [Xanthomonas campestris pv. mangiferaeindicae] Length = 254 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 15/188 (7%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLL 113 GD+ ++ E D P +W + + + R Sbjct: 65 GDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYRTDGHCPGVEYVGGQHRQVTRYLCDSG 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KK 166 G+ P+ L + + EA + ++ + ++ Sbjct: 125 MGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELLDPQE 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ Sbjct: 185 RRCHHIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVV 244 Query: 227 KAIRFGYI 234 + + + + Sbjct: 245 RGMHYRLL 252 >gi|291485935|dbj|BAI87010.1| hypothetical protein BSNT_05150 [Bacillus subtilis subsp. natto BEST195] Length = 200 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ E LA+ + G +V + L R LT RE L+LA Sbjct: 96 AGAHGYLLKDGEIDDLADAIRKCVKGK--RVFSPELTFNMMRD--ENPLTVREQEILRLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+++I +L LS TV Y+ KL A NR +A + A G+I Sbjct: 152 ALGKTTKDITLELYLSQGTVRNYISEIIQKLHAKNRTEAASIAEEKGWI 200 >gi|225873707|ref|YP_002755166.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] gi|225794522|gb|ACO34612.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] Length = 213 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + H ++ T E +R S + LT RE L+ Sbjct: 102 LQAGARGYLLKGMDADDLTAAIRSV-HAGKSRIPTVVAERLAERMSGSE-LTARELDVLR 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA L +S TV ++ + KL +R QA A++ G + Sbjct: 160 LIVQGRSNREIAADLHISEATVKTHINNLLSKLGVSDRTQAATTALQRGLV 210 >gi|86359968|ref|YP_471858.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86284070|gb|ABC93131.1| putative transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 264 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 69/198 (34%), Gaps = 17/198 (8%) Query: 51 ICELHNYDLDSGDIPNILIET-YG--DDFLFHFNSGLLPIIWQSIQE-----ETVIESSG 102 + +L N D D + Y D P W + + Sbjct: 57 LLKLRNIAEDMHDY---WFDRGYFRIDPVQQVALRTSAPFFWNYDPDADTLIRRFMSEDT 113 Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI---FTSEFLMLANEVIIEAHGACYQVI-- 157 R G+ PV + V F + + A + Sbjct: 114 APVTRYLSERDMSTGVTVPVHMPRGDYATVTGIRFGRNSDFERHALRYIADFNLLAHVFH 173 Query: 158 -TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 T + +K S LTERE CL+ + +GY+++EI+ + SV TV +L +A KL Sbjct: 174 ETAYALFDRKDKSVGIRLTERERECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKL 233 Query: 217 DAVNRIQAIAKAIRFGYI 234 A NR QA+ +A + + Sbjct: 234 GARNRTQAVVRATHYRLL 251 >gi|313636331|gb|EFS02121.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL S4-171] Length = 228 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS------- 169 L GY++ + L V I +G Y ++I ++ L +S Sbjct: 95 LRAGAVGYLLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGVYGYQ 154 Query: 170 ------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQL DG ++ I E L +S TV ++ S K+ +R Q Sbjct: 155 QPEVKMPLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQ 214 Query: 224 AIAKAIRFGYI 234 A+ AI+ G++ Sbjct: 215 AVVTAIKHGWV 225 >gi|299536017|ref|ZP_07049336.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis ZC1] gi|298728622|gb|EFI69178.1| transcriptional regulatory protein degU [Lysinibacillus fusiformis ZC1] Length = 224 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------- 173 L GY++ + + + + A+G Y +V + + FK+ S Sbjct: 94 LKSGALGYMLKEMDADEIVEAIKVVANGGSYLHPKVTKNLVAEFKRLSEHENKGNFHQTE 153 Query: 174 -------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE LQL DG ++ I E L +S TV ++ S K++ +R QA+ Sbjct: 154 IRRPFHLLTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVV 213 Query: 227 KAIRFGYI 234 AI+ G++ Sbjct: 214 TAIKNGWV 221 >gi|126652487|ref|ZP_01724659.1| DegU [Bacillus sp. B14905] gi|169826725|ref|YP_001696883.1| transcriptional regulatory protein degU [Lysinibacillus sphaericus C3-41] gi|126590758|gb|EAZ84873.1| DegU [Bacillus sp. B14905] gi|168991213|gb|ACA38753.1| Transcriptional regulatory protein degU (Protease production enhancer protein) [Lysinibacillus sphaericus C3-41] Length = 224 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------- 173 L GY++ + + + + A+G Y +V + + FK+ S Sbjct: 94 LKSGALGYMLKEMDADEIVEAIKVVANGGSYLHPKVTKNLVAEFKRLSEHENKGNFHQTE 153 Query: 174 -------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE LQL DG ++ I E L +S TV ++ S K++ +R QA+ Sbjct: 154 IRRPFHLLTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVV 213 Query: 227 KAIRFGYI 234 AI+ G++ Sbjct: 214 TAIKNGWV 221 >gi|307295298|ref|ZP_07575137.1| transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] gi|306878801|gb|EFN10020.1| transcriptional regulator, LuxR family [Sphingobium chlorophenolicum L-1] Length = 222 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 42/176 (23%), Positives = 65/176 (36%), Gaps = 19/176 (10%) Query: 75 DFLFHFNSGLLPII------WQSIQEETVIE-SSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 P W + + + A I PV L F Sbjct: 34 PLAEACRIEGQPFWADASGAWNEQGKRILAHLDFSYFGKMVAHP----ASIVVPVHLPFS 89 Query: 128 KNGYV---IFTSEFLMLANEVIIE---AHGACYQVITDFLELFK--KRSSAARNLTERET 179 + G V F + L+ E+ H + I D+ L + + LT E Sbjct: 90 RIGMVALSCFDNLRADLSAELKRHYYLIHLLSHFFINDYAHLSRKDRWLPTWAALTPLEV 149 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 SCL+ G G T +E+A +G + T+ +L +A KL AVNR QA+ A + G++ Sbjct: 150 SCLRWIGRGKTDDEVAAIMGRARPTIRFHLQNAAKKLGAVNRTQAVFLAAQLGFLS 205 >gi|302544315|ref|ZP_07296657.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461933|gb|EFL25026.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 229 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQ 183 G+++ +E L N V A G + L + S LTERET L Sbjct: 97 AGAIGFLLKNAEADDLRNAVKAAAAGQIHVSPAAISRLMGQVREPSGPEQLTERETEVLT 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G ++EIA L + TV Y+ KL +R QA A++ G + Sbjct: 157 MLARGKANKEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLV 207 >gi|25010384|ref|NP_734779.1| hypothetical protein gbs0310 [Streptococcus agalactiae NEM316] gi|77408096|ref|ZP_00784843.1| DNA-binding response regulator [Streptococcus agalactiae COH1] gi|77413304|ref|ZP_00789499.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|23094736|emb|CAD45955.1| unknown [Streptococcus agalactiae NEM316] gi|77160618|gb|EAO71734.1| DNA-binding response regulator [Streptococcus agalactiae 515] gi|77173280|gb|EAO76402.1| DNA-binding response regulator [Streptococcus agalactiae COH1] Length = 213 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + A G A + ++ K + LT RE L Sbjct: 98 AGAKGYMLKTSSAAEILNAIRKVARGEQAIENEVDKKIKAHDKCPALHEGLTARERDILN 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 158 LLAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHHLV 208 >gi|85059718|ref|YP_455420.1| transcriptional activator [Sodalis glossinidius str. 'morsitans'] gi|84780238|dbj|BAE75015.1| transcriptional activator [Sodalis glossinidius str. 'morsitans'] Length = 240 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/222 (15%), Positives = 65/222 (29%), Gaps = 36/222 (16%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY-------GDDFLFHFNSGLL 85 FA + +N P D P + Y D + Sbjct: 36 FAYFMMNKDDGQPA------------FMISDYPAGWLNQYRNYGYQKIDPVMLIACRKFT 83 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS--------E 137 P W+ + + + L G F + + + + + Sbjct: 84 PFSWK---NNPNMPDQNFYKMSSDYALD--NGYTFTLHDPDNNLATLTISQMKQNAVFYD 138 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEE 193 + + ++ + F + K++ S + L+ RE L A G T E Sbjct: 139 IIEKEKDKFQMLLITTHEKVIRFFDARKEQGSESEEEPCRLSPREKEVLFWASVGKTYNE 198 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 I+ L + TV ++ + KL N AI +A+ + Sbjct: 199 ISTILSIREGTVKFHIRNIINKLGVANAKHAITRAMELKLLS 240 >gi|229542357|ref|ZP_04431417.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229326777|gb|EEN92452.1| two component transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 200 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 4/108 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY++ E LA+ + G +V + EL LTERE L+LA Sbjct: 97 GVHGYLLKDGEIRELADAIRKCVAGK--RVFSP--ELMFDAIREENPLTEREQQILRLAA 152 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++ I E+L LS TV Y+ KL A NR +A + A G+I Sbjct: 153 LGKTTKAITEELYLSSGTVRNYISDIIHKLGANNRTEAASIAEEKGWI 200 >gi|146295566|ref|YP_001179337.1| two component LuxR family transcriptional regulator [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409142|gb|ABP66146.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 211 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 7/111 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L F +GY++ +S+ + N ++ G V K+ +NL+E Sbjct: 95 LSFGADGYILKSSDAKHIVNSILSVLDGKVVMDKEIALYVSDVLKRTSKQLFEKTQNLSE 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RE +L GY+++EIA L +S TV Y+ S KL+ NR Q Sbjct: 155 RELEIAKLISQGYSNKEIARMLFISEGTVRNYITSILQKLNLKNRTQIAVY 205 >gi|40804409|gb|AAR91700.1| transcriptional regulator AhyR/AsaR family [Xanthomonas oryzae pv. oryzae] Length = 254 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 70/190 (36%), Gaps = 19/190 (10%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLL 113 GD+ ++ E D P +W + + + R Sbjct: 65 GDMQHVWCEHGYYQHDPVQQRATRRNTPFVWSYRTDGDCAGVEYVGGQHRQVTRYLCDSG 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH---------GACYQVITDFLELF 164 G+ P+ L + F++ +A E + A +Q L Sbjct: 125 MGTGVTVPLHLPGG--AFATFSAAIDAVAAEALRLAESQLLPFLLLAHAFQARAQELLDP 182 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A Sbjct: 183 QERRCHHIPLTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEA 242 Query: 225 IAKAIRFGYI 234 + + + + + Sbjct: 243 VVRGMHYRLL 252 >gi|13475096|ref|NP_106660.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14025847|dbj|BAB52446.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 241 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 73/229 (31%), Gaps = 13/229 (5%) Query: 5 TLTGKKSSSLQ--ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 TL + S S+ + L FA ++ S D + +LI NY Sbjct: 7 TLLEQLSLSVDEVDFHNALASAAGAFDIPAFAYLSLVS--DRVTKPRLI---SNYHSGWT 61 Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 D + P W I + Q G+ P+ Sbjct: 62 SHYLRHQYERIDPVIEWARCSECPFQWGPGLGHAGISTRQQQLFDEAAEFGICCGLTIPL 121 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA------ARNLTE 176 + F ++ L + E + +++ + +R A +LT Sbjct: 122 VDRRGGVAAMTFAADRLDPTFLRVAEQYEQALEIMAMCFHIGVRRKLARGLAVDGVSLTP 181 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RE CL+ G ++ EI LG+ T +L +A KL + QA+ Sbjct: 182 REYECLEWTAKGKSAWEIGCILGIKERTAAFHLDNAKKKLGVRTKNQAV 230 >gi|239932122|ref|ZP_04689075.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440492|ref|ZP_06579882.1| two component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343387|gb|EFE70343.1| two component response regulator [Streptomyces ghanaensis ATCC 14672] Length = 213 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 49/115 (42%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTERE 178 L GYV + LA + G L + SA A +LTERE Sbjct: 97 LRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQAEVAGALLSQEESAPGQGRAGSLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 211 >gi|226305875|ref|YP_002765835.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184992|dbj|BAH33096.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 220 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDF---LELFKKRSSAARN 173 L +G+++ + L V + A G ++I D + R +A Sbjct: 97 LSVGASGFMLKDAPAEELIRAVRVVAEGQALLAPTVTRRLIADVTSRRAAPRARPAALDA 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIAE+L ++ TV ++G KLD +R QA+ A G Sbjct: 157 LTPREREVLELIARGLSNVEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGL 216 Query: 234 IC 235 + Sbjct: 217 VT 218 >gi|163848189|ref|YP_001636233.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222526094|ref|YP_002570565.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669478|gb|ABY35844.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222449973|gb|ACM54239.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 228 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 2/94 (2%) Query: 143 NEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 N++++ + V+ F ++ + L+ RE L+L G+T+ EIA +L + Sbjct: 128 NDLVLASPEVAATVLEAFRQMVGDDDIQTIFSPLSARELEVLELVAAGHTNREIAARLDI 187 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV ++ S KL +R QA+ A+R G+I Sbjct: 188 SNQTVKNHISSILRKLAVNDRTQAVVYAMRRGWI 221 >gi|37520140|ref|NP_923517.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211133|dbj|BAC88512.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 217 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L +GY + L + + G + QV + F + + A LTE Sbjct: 97 LQAGADGYCLKGIGPDRLLTVIREVSAGNGWFDAKVLAQVRSAFAVAPSEPPANAAALTE 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L G ++ EI +L +S TV ++ + KL A +R QA A+ G I Sbjct: 157 REREVLGWIARGASNPEIGRQLHISSGTVRVHVHAILRKLGATDRTQAAVLALEKGLIA 215 >gi|289435776|ref|YP_003465648.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172020|emb|CBH28566.1| DNA-binding response regulator [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313631967|gb|EFR99092.1| transcriptional regulatory protein DegU [Listeria seeligeri FSL N1-067] Length = 228 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS------- 169 L GY++ + L V I +G Y ++I ++ L +S Sbjct: 95 LRAGAVGYLLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGVYGYQ 154 Query: 170 ------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQL DG ++ I E L +S TV ++ S K+ +R Q Sbjct: 155 QPEVKMPLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQ 214 Query: 224 AIAKAIRFGYI 234 A+ AI+ G++ Sbjct: 215 AVVTAIKHGWV 225 >gi|319744296|gb|EFV96660.1| DNA-binding response regulator [Streptococcus agalactiae ATCC 13813] Length = 217 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + A G A + ++ K + LT RE L Sbjct: 102 AGAKGYMLKTSSAAEILNAIRKVARGEQAIENEVDKKIKAHDKCPALHEGLTARERDILN 161 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 162 LLAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHHLV 212 >gi|16801720|ref|NP_471988.1| hypothetical protein lin2659 [Listeria innocua Clip11262] gi|16804553|ref|NP_466038.1| hypothetical protein lmo2515 [Listeria monocytogenes EGD-e] gi|46908687|ref|YP_015076.1| DNA-binding response regulator DegU [Listeria monocytogenes serotype 4b str. F2365] gi|47093717|ref|ZP_00231469.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b H7858] gi|47096108|ref|ZP_00233709.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 1/2a F6854] gi|217963383|ref|YP_002349061.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|224499869|ref|ZP_03668218.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes Finland 1988] gi|224503244|ref|ZP_03671551.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes FSL R2-561] gi|226225063|ref|YP_002759170.1| two-component response regulator DegU [Listeria monocytogenes Clip81459] gi|254825362|ref|ZP_05230363.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J1-194] gi|254828090|ref|ZP_05232777.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N3-165] gi|254831062|ref|ZP_05235717.1| two-component response regulator DegU [Listeria monocytogenes 10403S] gi|254853956|ref|ZP_05243304.1| DegU [Listeria monocytogenes FSL R2-503] gi|254900347|ref|ZP_05260271.1| two-component response regulator DegU [Listeria monocytogenes J0161] gi|254913414|ref|ZP_05263426.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818] gi|254932243|ref|ZP_05265602.1| DNA-binding response regulator DegU [Listeria monocytogenes HPB2262] gi|254937795|ref|ZP_05269492.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900] gi|254993056|ref|ZP_05275246.1| two-component response regulator DegU [Listeria monocytogenes FSL J2-064] gi|255030722|ref|ZP_05302673.1| two-component response regulator DegU [Listeria monocytogenes LO28] gi|255521855|ref|ZP_05389092.1| two-component response regulator DegU [Listeria monocytogenes FSL J1-175] gi|284802953|ref|YP_003414818.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578] gi|284996094|ref|YP_003417862.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923] gi|290892678|ref|ZP_06555670.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J2-071] gi|300764985|ref|ZP_07074973.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N1-017] gi|16412003|emb|CAD00593.1| lmo2515 [Listeria monocytogenes EGD-e] gi|16415195|emb|CAC97885.1| lin2659 [Listeria innocua Clip11262] gi|46881959|gb|AAT05253.1| DNA-binding response regulator DegU [Listeria monocytogenes serotype 4b str. F2365] gi|47015569|gb|EAL06501.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 1/2a F6854] gi|47017911|gb|EAL08692.1| DNA-binding response regulator DegU [Listeria monocytogenes str. 4b H7858] gi|50313181|gb|AAT74538.1| DegU [Listeria monocytogenes] gi|217332653|gb|ACK38447.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|225877525|emb|CAS06239.1| Putative two-component response regulator DegU [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258600475|gb|EEW13800.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N3-165] gi|258607345|gb|EEW19953.1| DegU [Listeria monocytogenes FSL R2-503] gi|258610399|gb|EEW23007.1| DNA-binding response regulator DegU [Listeria monocytogenes F6900] gi|284058515|gb|ADB69456.1| hypothetical protein LM5578_2710 [Listeria monocytogenes 08-5578] gi|284061561|gb|ADB72500.1| hypothetical protein LM5923_2659 [Listeria monocytogenes 08-5923] gi|290557738|gb|EFD91260.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J2-071] gi|293583800|gb|EFF95832.1| DNA-binding response regulator DegU [Listeria monocytogenes HPB2262] gi|293591421|gb|EFF99755.1| DNA-binding response regulator DegU [Listeria monocytogenes J2818] gi|293594605|gb|EFG02366.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL J1-194] gi|300514285|gb|EFK41344.1| DNA-binding response regulator DegU [Listeria monocytogenes FSL N1-017] gi|307572042|emb|CAR85221.1| DNA-binding response regulator [Listeria monocytogenes L99] gi|313617172|gb|EFR89687.1| transcriptional regulatory protein DegU [Listeria innocua FSL S4-378] gi|313622371|gb|EFR92844.1| transcriptional regulatory protein DegU [Listeria innocua FSL J1-023] gi|328465121|gb|EGF36389.1| hypothetical protein LM1816_15707 [Listeria monocytogenes 1816] gi|328471125|gb|EGF42029.1| hypothetical protein LM220_09715 [Listeria monocytogenes 220] gi|332312945|gb|EGJ26040.1| Transcriptional regulatory protein degU [Listeria monocytogenes str. Scott A] Length = 228 Score = 106 bits (266), Expect = 2e-21, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS------- 169 L GY++ + L V I +G Y ++I ++ L +S Sbjct: 95 LRAGAVGYLLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGVYGYQ 154 Query: 170 ------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQL DG ++ I E L +S TV ++ S K+ +R Q Sbjct: 155 QPEVKMPLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQ 214 Query: 224 AIAKAIRFGYI 234 A+ AI+ G++ Sbjct: 215 AVVTAIKHGWV 225 >gi|290958644|ref|YP_003489826.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260648170|emb|CBG71278.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G+++ + LA V + A G ++I +F L + + Sbjct: 98 LRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGVTRRLIAEFSRLGTAPRAPLKERVG 157 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERET L L G ++ EIA+ L ++ TV ++G VKL +R QA A G Sbjct: 158 DLTERETEVLSLIAQGLSNAEIAQSLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 217 Query: 233 YI 234 + Sbjct: 218 LV 219 >gi|330467719|ref|YP_004405462.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810690|gb|AEB44862.1| two component transcriptional regulator, LuxR family protein [Verrucosispora maris AB-18-032] Length = 211 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFKKRSSAA-------RN 173 L GY++ L + A G + L + S A ++ Sbjct: 90 LRAGARGYLLKDVTLEQLTRAIHTLADGGTLIAPSITDRMLRAIRSGPSPAGPDAPTVQS 149 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L GY++ EIA L L+ TV ++ KL A +R A+ +A+ G Sbjct: 150 LTEREREVLRLVAHGYSNREIAGALFLAEGTVKNHVSMILTKLGARDRTNAVLRALHEGI 209 Query: 234 I 234 + Sbjct: 210 L 210 >gi|322386960|ref|ZP_08060584.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321269242|gb|EFX52178.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 210 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L GY++ TS + + V A G A ++ +E + +LT RE Sbjct: 91 PV-LDAGARGYMLKTSSADEILHAVRKVAKGEFAIETEVSKKVEYHRNHIELHEDLTARE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 150 RDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205 >gi|293491176|gb|ADE45142.1| transcriptional regulator [Xanthomonas campestris pv. mangiferaeindicae] Length = 254 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 66/188 (35%), Gaps = 15/188 (7%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLL 113 GD+ ++ E D P +W + + + R Sbjct: 65 GDMQHVWCEHGYYQHDPVQQRATRRTTPFVWSYRTDGHCPGVEYVGGQHRQVTRYLCDSG 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KK 166 G+ P+ L + + EA + ++ + ++ Sbjct: 125 MGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELLDPQE 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A+ Sbjct: 185 RRCHHIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVEAVV 244 Query: 227 KAIRFGYI 234 + + + + Sbjct: 245 RGMHYRLL 252 >gi|77458474|ref|YP_347979.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77382477|gb|ABA73990.1| putative transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf0-1] Length = 239 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 70/227 (30%), Gaps = 14/227 (6%) Query: 16 ELSPRLHLIQNRIKARN-------FALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 E +P L IQ ++ F L++ SA + + E + Sbjct: 17 EAAPTLVAIQKAVRGFAGAYGYDRFVLFSATSASEDVVERIYWVEGDWFGDGIAVDAQTY 76 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 ++ H W +QE+ S + G+ PV Sbjct: 77 VQRC--PVTRHLLDARESFFWSKVQEQ----SGELYRLVRVPSGPGVHGLQIPVFGPQGL 130 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQLAGD 187 G + E + + V + L + A L+ RE L Sbjct: 131 EGAMSLGGEQIDASARVRLALGMLASVAFFSARRLLEAPLDETAGKLSTREREVLAWVAA 190 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +IA LGLS TV +L SA L QAI AIR G I Sbjct: 191 GRRQADIAATLGLSGRTVENHLRSARRHLGVATTAQAIKIAIRKGEI 237 >gi|269955414|ref|YP_003325203.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269304095|gb|ACZ29645.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 212 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + A G T L ++A LT RE L L Sbjct: 103 AGATGYLLKDTPRDALVRGIRAAAQGQTVLAPTVATRLVGSVRASADRLTPREAQVLALV 162 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G ++ E+ +L ++ TV +L A KL +R A+ +A R G++ Sbjct: 163 AEGCSNAEVGRRLFIAEATVKTHLLRAFAKLGVDDRTAAVTEARRRGWLV 212 >gi|225868023|ref|YP_002743971.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225701299|emb|CAW98303.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 213 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV GY++ TS + N + A G A + ++ ++ LT RE Sbjct: 94 PVIDA-GAKGYMLKTSSAAEILNAIRKVAKGELAIETEVDKKIKAHDQQPDLHEELTARE 152 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL +R QA+ A R + Sbjct: 153 YDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLQVDDRTQAVVYAFRHHLV 208 >gi|229493356|ref|ZP_04387145.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|229319672|gb|EEN85504.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 220 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDF---LELFKKRSSAARN 173 L +G+++ + L V + A G ++I D + R +A Sbjct: 97 LSVGASGFMLKDAPAEELIRAVRVVAEGQALLAPTVTRRLIADVTSRRAAPRARPAALDA 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIAE+L ++ TV ++G KLD +R QA+ A G Sbjct: 157 LTPREREVLELIARGLSNVEIAERLFVAEQTVKTHVGKVLSKLDLRDRAQAVVLAYESGL 216 Query: 234 IC 235 + Sbjct: 217 VT 218 >gi|218548547|ref|YP_002382338.1| DNA-binding transcriptional activator SdiA [Escherichia fergusonii ATCC 35469] gi|218356088|emb|CAQ88705.1| DNA-binding transcriptional activator [Escherichia fergusonii ATCC 35469] Length = 251 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 81/231 (35%), Gaps = 13/231 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ +S +++ L +++ F Y++ P + + Y Sbjct: 29 QEMASAEDVFQELQFQTQKLE---FDYYSLCVRHPVPFTRPKVAYYSTYPEAWVSYYQQH 85 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L N ++W + S Q G+ + L Sbjct: 86 NFLAIDPVLKPENFSQGHLLWDD-----ALFSEAQPLWDAARAHGLRRGVTQYLMLSNRA 140 Query: 129 NGYVIFTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQ 183 G++ + E + +E+ ++ + + L + + A ++RET L+ Sbjct: 141 LGFLSLSRMSAREGPIAHDELELKLQLLVRESLNVLARLQHEMVMTPAMRFSKRETEILR 200 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 201 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGII 251 >gi|29831078|ref|NP_825712.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608192|dbj|BAC72247.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 224 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G+++ + LA V + A G ++I +F L + + Sbjct: 98 LRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDTTPRAPLKVRVG 157 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA++L ++ TV ++G VKL +R QA A G Sbjct: 158 ELTERETEVLALIAQGMSNAEIADRLVVAEQTVKTHVGRILVKLSLRDRTQAAVFAYESG 217 Query: 233 YI 234 + Sbjct: 218 LV 219 >gi|295696008|ref|YP_003589246.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295411610|gb|ADG06102.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 223 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRS-----SAARNLT 175 L Y++ TS +A + G QV + ++ LT Sbjct: 100 LEAGAFSYLLKTSRAAEIAQAIRAAVQGQSVLEAQVAAKVMARVRRPDGQNERPLHEQLT 159 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L L +GY+++E+A+ L + V TV ++ + KL +R QA+ A + G + Sbjct: 160 DREREVLLLLAEGYSNQEVADALHIGVKTVKFHVTNILDKLQVEDRTQAVIYAYKHGLV 218 >gi|229051230|ref|ZP_04194758.1| Response regulator receiver [Bacillus cereus AH676] gi|228722128|gb|EEL73545.1| Response regulator receiver [Bacillus cereus AH676] Length = 214 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 13/122 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLE------LFKKRSSAAR 172 GY++ +E + + + GA Q T F++ L + Sbjct: 92 AGAVGYILKDTETEEMLDSIRAMNRGAMIYNSTTANQAFTHFIKQENDYNLADEELEYKE 151 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE LQL G + EIA+ L +S TV ++ + KLD +R QA AIR Sbjct: 152 ALTKREIDVLQLLAYGKQNHEIAKILFVSDGTVKTHIHNILQKLDVTDRTQAAVMAIRKK 211 Query: 233 YI 234 + Sbjct: 212 IV 213 >gi|4218542|emb|CAA09631.1| putative two-component response regulator [Streptomyces violaceoruber] Length = 202 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 3/112 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ + LA V A G ++ I L L SA LTERE L+ Sbjct: 94 LDAKVAGFLPKDASPQDLAEAVRRIAAG--HRAIDPQLALA-AWDSAESPLTEREMEVLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L +G + EIA +L LS TV YL S KL+A NR+ A+ A G++ Sbjct: 151 LTAEGDEAPEIAARLHLSTGTVRNYLTSVVTKLNARNRVDAVRIAHESGWLV 202 >gi|89096396|ref|ZP_01169289.1| YocG [Bacillus sp. NRRL B-14911] gi|89089250|gb|EAR68358.1| YocG [Bacillus sp. NRRL B-14911] Length = 198 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G EL + LTERE + L+L Sbjct: 93 AGVSGYLLKDSPSEELAGSIRSVMAGRRIYA----PELMDDMYAEENPLTEREKAVLELV 148 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG + EIA +L + TV Y+ + KL+ NRI+AI ++ G+ Sbjct: 149 ADGKNTNEIAAELSIKSGTVRNYVSAILEKLEVQNRIEAITRSREKGW 196 >gi|320008468|gb|ADW03318.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 218 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFKKRSSAAR-NLTERETSC 181 GY++ + L V A G V + + + ++ AR L+ RE Sbjct: 105 AGATGYLLKDAPREELLTAVRAAADGRTVLSPAVASRLVSRVRTPAAPAREPLSVREREV 164 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ EIA +L +S TV +L KL A +R A+A A G + Sbjct: 165 LRLVARGTSNREIAAELFISEATVKTHLTHVFAKLGAKDRAAAVATAYERGIL 217 >gi|239929935|ref|ZP_04686888.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291438269|ref|ZP_06577659.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291341164|gb|EFE68120.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G+++ + LA V + A G ++I +F L + + + Sbjct: 94 LRAGASGFLLKDASADQLAEAVRVVAAGDAMLAPGITRRLIAEFSRLAPEPRTPLKERVG 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERET L L G ++ EIA +L ++ TV ++G VKL +R QA A G Sbjct: 154 DLTERETEVLALIARGLSNAEIAVRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|289664500|ref|ZP_06486081.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 267 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 67/190 (35%), Gaps = 19/190 (10%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQSIQEET-----VIESSGQLSVRLEGGLL 113 GD+ ++ D P +W + + R Sbjct: 78 GDMQHVWCAHGYYQHDPVQQRATRRTTPFVWSYHTDGNCAGVEYVGGQHWQVTRYLCDSG 137 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELF------- 164 G P+ L + F+ + E + EA + ++ + Sbjct: 138 MGTGATVPLHLPGG--AFATFSGAIDTVDAEAPHLAEAQLLPFLLLAHAFQARAQELLDP 195 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++A Sbjct: 196 QERRCHHIALTRRERECLQYSAKGLTSKNIAAALNRSTATVNLHLNSAARKLGARNRVEA 255 Query: 225 IAKAIRFGYI 234 + + + + + Sbjct: 256 VVRGMHYRLL 265 >gi|307150361|ref|YP_003885745.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306980589|gb|ADN12470.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 224 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------- 173 L +GY + E+ L + + +HG Y ++ L K S A Sbjct: 102 LASGADGYCLKNIEWEELLVIIRLISHGGVYLDPRIAHKVSHLLKSGSFAVETNTTPKAV 161 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE L+L +G+++++IAE+L LS T+ +Y+ KL +R+QA AKA+R Sbjct: 162 TVLSERERLILKLIAEGFSNKKIAEQLFLSPGTIKSYVRMLLNKLSVDDRVQAAAKAVRE 221 Query: 232 GYI 234 G I Sbjct: 222 GLI 224 >gi|242371807|ref|ZP_04817381.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242350508|gb|EES42109.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 212 Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A V G +V+ KKR+ LTERE Sbjct: 98 LDAGVDSYILKTTSASDIAEAVRKTYQGESVFEPEVLVKMRNRMKKRAELYEMLTEREME 157 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 158 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 211 >gi|241258818|ref|YP_002978702.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240863288|gb|ACS60951.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 275 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 61/173 (35%), Gaps = 12/173 (6%) Query: 74 DDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D P W + + R G+ PV + Sbjct: 90 DPVQQVALRTSAPFFWNYDPDADTLINRFMTEDTAPVTRYLSERDMSTGVTVPVHMPRGD 149 Query: 129 NGYVI---FTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSSAARNLTERETSC 181 V F + + A + L + +S LTERE C Sbjct: 150 YATVTGIRFGRNKDFERHALRYIADFNLLAHVFHETAYSLFDTRAKSVGTIRLTEREREC 209 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ + +GY+++EI+ + SV TV +L +AT KL A NR QA+ +A + + Sbjct: 210 LRHSAEGYSAKEISRIIDRSVPTVVMHLNAATKKLGARNRTQAVVRATHYRLL 262 >gi|326332943|ref|ZP_08199200.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325949301|gb|EGD41384.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 220 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN-LT 175 L +GYV+ + L G + ++ D+L+ + S R LT Sbjct: 100 LKVGASGYVLKSVADEDLVKACRTAMSGQAFVYPGAMSALVRDYLDRLNRGESLPRTVLT 159 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L +G+++ EIA +L +S TV + + KL +R Q AIR G I Sbjct: 160 EREDEVLKLIAEGHSTREIARELTISYKTVERHRENILAKLGLRDRTQVTRYAIRAGLI 218 >gi|325916009|ref|ZP_08178302.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325537819|gb|EGD09522.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 213 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ ++ L + + G V E L+ RET L Sbjct: 100 LQAGACGYLLKSALRRELVDTIRDVRRGQRRHVPASVAENIAAH-VLDDALSARETEVLS 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G ++++I L +S TV A++ + KL +R A+ A+R G + Sbjct: 159 LVATGCSNKQIGNALSISEETVKAHMKNILAKLGVRDRTHAVTVALRRGILS 210 >gi|328951621|ref|YP_004368956.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328451945|gb|AEB12846.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 222 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA-ARNLTER 177 GY++ ++ L + + G Q+I DF + ++A A LTER Sbjct: 96 AGARGYLLKDAQAEELIDAIRRVHQGEVLLDGELAEQIIQDFRAKREALTTAPAAELTER 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L+L G T++EIA++LGLS TV L KL NR QA AIR G Sbjct: 156 EVQILRLLAQGATNQEIADELGLSEKTVRNRLSEIFAKLHLNNRTQAALYAIREGL 211 >gi|306832892|ref|ZP_07466025.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|304424967|gb|EFM28100.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] Length = 214 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + A G A + ++ + +LT RE L+ Sbjct: 99 AGAKGYMLKTSSAAEILNAIQKVARGELAIETEVDKKIKAHDMQPELHDDLTARERDILR 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 159 LLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFKHHLV 209 >gi|294056650|ref|YP_003550308.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293615983|gb|ADE56138.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 208 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 3/134 (2%) Query: 102 GQLSVRLEGGLLPFAGIAFPVRLGFHK-NGYVIFTSEFLMLANEVIIEAHGACYQVITDF 160 + L + G +R GY+ + +L ++ A G Y Sbjct: 74 AEFPEAKAIMLSIYEGEDIVIRASRGGVKGYLSKDCDIELLHEAIVEVAAGGTY--FPAS 131 Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + + ++L+ RE L L G +++++A+KL +S+ TV ++ + KL + Sbjct: 132 IARTMSAHTEDQDLSARELQVLHLVAAGSSNKDVADKLSISLPTVKMHMTNIMKKLSVYD 191 Query: 221 RIQAIAKAIRFGYI 234 R Q + AIR G + Sbjct: 192 RTQLVIAAIRKGIV 205 >gi|283785661|ref|YP_003365526.1| regulatory protein [Citrobacter rodentium ICC168] gi|282949115|emb|CBG88722.1| regulatory protein [Citrobacter rodentium ICC168] Length = 240 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 43/236 (18%), Positives = 78/236 (33%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ +S +++ L Q + + F Y + P + I P Sbjct: 15 LRFQEMASAKDVYSEL---QRQAQLLEFDYYALYVRHPVPFTRPRI-------SFQTSYP 64 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y + + L P I + + + Q G+ V Sbjct: 65 EAWVSRYQAENYSAIDPVLKPENFIQGHLPWSDDLFNDAQTLWDAARAHGLRKGVTQCVM 124 Query: 124 LGFHKNGYVIFTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L G++ + +EV + + + L + A ++RE Sbjct: 125 LPNRALGFLSVVRASLRSNPIDDDEVELRLQLLVRESLAALSRLEDEMVMAPEMRFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 185 KEILKWTAEGKTSYEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGLI 240 >gi|289642814|ref|ZP_06474951.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289507383|gb|EFD28345.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 233 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 12/120 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSS-----AARN 173 GY++ + +A+ V +G ++I +F L + A + Sbjct: 110 AGAVGYLLKSIPPHEVASAVRAVHNGLSLISPSMASKLIVEFAALARGSDDRPSRVPAPH 169 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G + EIA KL +S +TV ++ + KL +R++A+ A+R G Sbjct: 170 LTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 229 >gi|328951086|ref|YP_004368421.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328451410|gb|AEB12311.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 216 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA-ARNLTER 177 GY++ ++ L + + G Q+I DF + ++A A LTER Sbjct: 96 AGARGYLLKDAQAEELIDAIRRVHQGEVLLDGELAEQIIQDFRAKREALTTAPAAELTER 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L+L G T++EIA++LGLS TV L KL NR QA AIR G Sbjct: 156 EVQILRLLAQGATNQEIADELGLSEKTVRNRLSEIFAKLHLNNRTQAALYAIREGL 211 >gi|116249629|ref|YP_765467.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115254277|emb|CAK03896.1| putative LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 270 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 61/173 (35%), Gaps = 12/173 (6%) Query: 74 DDFLFHFNSGLLPIIWQSIQEE-----TVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D P W + + R G+ PV + Sbjct: 85 DPVQQVALRTSAPFFWNYDPDADTLINRFMTEDTAPVTRYLSERDMSTGVTVPVHMPRGD 144 Query: 129 NGYVI---FTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSSAARNLTERETSC 181 V F + + A + L + +S LTERE C Sbjct: 145 YATVTGIRFGRNKDFERHALRYIADFNLLAHVFHETAYSLFDTRAKSVGTIRLTEREREC 204 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ + +GY+++EI+ + SV TV +L +AT KL A NR QA+ +A + + Sbjct: 205 LRHSAEGYSAKEISRIIDRSVPTVVMHLNAATKKLGARNRTQAVVRATHYRLL 257 >gi|325168564|ref|YP_004280354.1| LuxR family transcriptional regulator [Agrobacterium sp. H13-3] gi|325064287|gb|ADY67976.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 240 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 76/236 (32%), Gaps = 11/236 (4%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 ++ L + + Q + + + F L++ ++A + P + E + Sbjct: 12 QSVLAIDAAETFQTIQTEVRSLVAPFGYDRFVLFSASAAREEPIERIYWIEGDWFG---N 68 Query: 63 DIPNILIETYGD--DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 P + ETY H P W +T E+ V G+ Sbjct: 69 GDP-VTEETYIRRCAITRHILGAREPFFWT----KTFRENGELYRVVNLPRGPGIHGLQV 123 Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERET 179 PV G + + + +L + +SA L++RE Sbjct: 124 PVFGPSGLEGAMSLGGTQINASPTTKWILTLLAVAAFYSARKLIEAPVASAIAVLSDRER 183 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G EIA LGLS T+ +L +L QAI AIR G I Sbjct: 184 EVLTWTAAGRRQFEIAATLGLSERTIENHLRRIRHRLGVSTTAQAIRIAIRNGEIT 239 >gi|297566899|ref|YP_003685871.1| LuxR family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851348|gb|ADH64363.1| two component transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 217 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 GY++ ++ L + +G Q+I DF + L+ERE Sbjct: 96 AGARGYMLKDADAKDLLEAIRRVNNGEVLLDAELAEQIIQDFKAKRESVPKPHAELSERE 155 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L GYT+ EIA +L LS TV L KL NR QA A+R G Sbjct: 156 VQILKLVAQGYTNLEIAGELSLSEKTVRNRLSEIFQKLHLNNRTQAALYALREGL 210 >gi|195978655|ref|YP_002123899.1| TCS response regulator YvqC-like [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975360|gb|ACG62886.1| TCS response regulator YvqC-like [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 197 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV GY++ TS + N + A G A + ++ ++ LT RE Sbjct: 78 PVIDA-GAKGYMLKTSSAAEILNAIRKVAKGELAIETEVDKKIKAHDQQPDLHEELTARE 136 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL +R QA+ A R + Sbjct: 137 YDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLQVDDRTQAVVYAFRHHLV 192 >gi|71279244|ref|YP_268811.1| LuxR family transcriptional regulator [Colwellia psychrerythraea 34H] gi|71144984|gb|AAZ25457.1| transcriptional regulator, LuxR family [Colwellia psychrerythraea 34H] Length = 269 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 6/123 (4%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANE------VIIEAHGACYQVITDFLELFKKRSSAA 171 I+ PV+L + + F S+ E +++ AH Y I + + Sbjct: 135 ISIPVQLPPSEYWSLSFFSKNTRYQLESSDKARLMLFAHQLVYHCIDNLQWREDGMKYSI 194 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE CL + G T+ EIA+ LGL T+ Y+ + +L+A ++ QA+ KAI F Sbjct: 195 VKLTAREKDCLYWSAQGKTANEIADILGLKTETIRKYIKNVMKRLNARSKTQAVVKAIEF 254 Query: 232 GYI 234 G + Sbjct: 255 GLL 257 >gi|116511719|ref|YP_808935.1| DNA-binding response regulator [Lactococcus lactis subsp. cremoris SK11] gi|125624447|ref|YP_001032930.1| two-component system regulator llrD [Lactococcus lactis subsp. cremoris MG1363] gi|12483697|gb|AAG53723.1|AF172650_3 RrD [Lactococcus lactis subsp. cremoris MG1363] gi|116107373|gb|ABJ72513.1| DNA-binding response regulator (Rec-wHTH domains) [Lactococcus lactis subsp. cremoris SK11] gi|124493255|emb|CAL98222.1| two-component system regulator llrD [Lactococcus lactis subsp. cremoris MG1363] gi|300071234|gb|ADJ60634.1| two-component system regulator llrD [Lactococcus lactis subsp. cremoris NZ9000] Length = 209 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 58/119 (48%), Gaps = 4/119 (3%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLT 175 FP L GY++ TS+ +A + A+G V + ++ +L+ Sbjct: 92 VFPA-LAAGAKGYILKTSQAAEIAMAIRKVANGEDVLSDAVKEKIAQQKHRKHELYDDLS 150 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L++ G +++EIA++L +S+ TV ++ + KL+ +R QA AI+ + Sbjct: 151 KRELEVLKVLATGLSNQEIADELFISLKTVKTHVSNIFNKLEVSDRTQATIYAIQHHLV 209 >gi|229821303|ref|YP_002882829.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567216|gb|ACQ81067.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 231 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 11/121 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-----------QVITDFLELFKKRSSAARNL 174 +G+++ + + + G + + K ++A L Sbjct: 108 AGASGFLLKDTPPEEMLAAIRTVHAGDAVIAPSSTKRLIEHLAAVLPDEQKTPTTALDAL 167 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L L G T+ EI L ++ TV ++G KL A +R+QA+ A G + Sbjct: 168 TEREREVLVLIARGRTNTEIGADLFVAEATVKTHVGRILAKLGARDRVQAVVIAYETGLV 227 Query: 235 C 235 Sbjct: 228 A 228 >gi|225871059|ref|YP_002747006.1| response regulator protein [Streptococcus equi subsp. equi 4047] gi|225700463|emb|CAW94880.1| response regulator protein [Streptococcus equi subsp. equi 4047] Length = 213 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV GY++ TS + N + A G A + ++ ++ + LT RE Sbjct: 94 PVIDA-GAKGYMLKTSSAAEILNAIRKVAKGELAIETEVDKKIKAHDQQPNLHEELTARE 152 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL +R QA+ A R + Sbjct: 153 YDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLQVDDRTQAVVYAFRHHLV 208 >gi|146276004|ref|YP_001166164.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] gi|145322695|gb|ABP64638.1| regulatory protein, LuxR [Novosphingobium aromaticivorans DSM 12444] Length = 248 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 61/168 (36%), Gaps = 8/168 (4%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG--IAFPVRLGFHKNGYV 132 FL P + + T S V G F G I PV L G V Sbjct: 76 PFLTAARLVAEPFFYTAGTLATWRPSGLLGGVDCSGVAKSFGGEAIVAPVHLPRGIVGAV 135 Query: 133 IFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 ++ S + +V +A + + + + LT RE CL+ A Sbjct: 136 VWCSREPIGVAQVFAGKAEHFQALALRLVATHNEARGRPRNAGVPQKLTRREVQCLRWAA 195 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EI L LS TV +L +A KL A R Q+I A GY+ Sbjct: 196 AGKTDGEIGIILDLSHSTVRFHLRNAAEKLGATGRAQSIQLAAGLGYV 243 >gi|126657363|ref|ZP_01728522.1| NarL subfamily protein [Cyanothece sp. CCY0110] gi|126621350|gb|EAZ92062.1| NarL subfamily protein [Cyanothece sp. CCY0110] Length = 210 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN----LTE 176 L + Y I + L + GA Y Q+ L+ K + L+E Sbjct: 93 LSSGADAYCIKGASLERLLAAIEAAQDGATYLDPQIARLVLDNLKPPTPEPNQNIALLSE 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G ++ EIAE L LS +T+ ++ KL +R+QA A+R G + Sbjct: 153 RELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 210 >gi|257069188|ref|YP_003155443.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560006|gb|ACU85853.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 229 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 10/120 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFL---ELFKKRSSAARNLT 175 +G+++ ++ L + A A +++ + E ++ +S NLT Sbjct: 106 AGASGFLLKDAQPEDLLGAIRTVHSGDAVIAPSATRRLLERVVAAPEPEQQDASVLENLT 165 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ERE L L G G++++EI +L ++ TV ++G KL A +R+QA+ A G + Sbjct: 166 EREREVLTLMGRGFSNQEIGAELFVAEATVKTHVGRVLAKLGARDRVQAVIIAFETGLVS 225 >gi|94971954|ref|YP_593994.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554005|gb|ABF43920.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 208 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 3/108 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ L + V A G + V + +L L R A +L+ RE L Sbjct: 97 AGASGYLLKDMRPTELFDVVRRVAAGELFIQPSVASKYLHLLTTRQLGAEHLSPREEDVL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +L G +++ IA L +S TV ++ S K+ NR +A A R Sbjct: 157 RLLARGLSNKAIARDLAISESTVKNHVKSILAKMQVRNRTEAALNASR 204 >gi|262203966|ref|YP_003275174.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087313|gb|ACY23281.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 230 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 14/123 (11%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN---- 173 +G+++ ++ L V + A G ++I+ F + + ++ Sbjct: 100 AAGASGFLVKHTQPEELVRAVRVIAAGDALLSPSVTRRLISRFADAGRSPTTPVTPGGGP 159 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERET ++L DG ++EEIA++ +S TV ++ A KLDA +R Q + A R Sbjct: 160 VSALTERETEVVRLVADGLSNEEIAQRWVVSNATVRTHVSRAMTKLDARDRAQLVVFAYR 219 Query: 231 FGY 233 G Sbjct: 220 LGL 222 >gi|219846976|ref|YP_002461409.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541235|gb|ACL22973.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 229 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 2/94 (2%) Query: 143 NEVIIEAHGACYQVITDFLELFKKR--SSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 N++++ + V+ F ++ + L+ RE L+L G T+ EIA +L + Sbjct: 128 NDLVLTSPEVAATVLEAFRQMVGDDDVQTVFSPLSARELEVLELVAAGRTNREIAAQLDI 187 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV ++ S KL +R QA+ A+R G+I Sbjct: 188 SNQTVKNHISSILRKLAVNDRTQAVVYAMRRGWI 221 >gi|324113634|gb|EGC07609.1| autoinducer binding domain-containing protein [Escherichia fergusonii B253] Length = 251 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 82/231 (35%), Gaps = 13/231 (5%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ +S +++ L L +++ F Y++ P + + Y Sbjct: 29 QEMASAEDVFQELQLQTQKLE---FDYYSLCVRHPVPFTRPKVAYYSTYPEAWVSYYQQH 85 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D L N ++W + S Q G+ + L Sbjct: 86 NFLAIDPVLKPENFSQGHLLWDD-----ALFSEAQPLWDAARAHGLRRGVTQYLMLSNRA 140 Query: 129 NGYVIFTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQ 183 G++ + E + +E+ ++ + + + + + A ++RET L+ Sbjct: 141 LGFLSLSRMSAREGPIAHDELELKLQLLVRESLNVLARVQHEMVMTPAMRFSKRETEILR 200 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 201 WTAEGKTSAEIAMILSISENTVNFHQKNMQKKFNAPNKTQVACYAAATGII 251 >gi|323489900|ref|ZP_08095122.1| transcriptional regulatory protein degU (protease production enhancer protein) [Planococcus donghaensis MPA1U2] gi|323396407|gb|EGA89231.1| transcriptional regulatory protein degU (protease production enhancer protein) [Planococcus donghaensis MPA1U2] Length = 224 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L GY++ + + + + A G Y ++ +F L ++ + + + Sbjct: 94 LKTGALGYMLKEMDADAIIQAIKVVAKGGSYLHPKVTRNLVMEFRRLSERENKGSFHQTE 153 Query: 174 -------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE+ LQL DG ++ I E L +S TV ++ S K+ +R QA+ Sbjct: 154 IRRPYHLLTKRESEVLQLLTDGQSNRVIGETLFISEKTVKNHVSSILQKMQVNDRTQAVV 213 Query: 227 KAIRFGYI 234 AI+ G++ Sbjct: 214 TAIKNGWV 221 >gi|296119236|ref|ZP_06837805.1| two-component system response regulator [Corynebacterium ammoniagenes DSM 20306] gi|295967757|gb|EFG81013.1| two-component system response regulator [Corynebacterium ammoniagenes DSM 20306] Length = 212 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + + L + V A G L + + +LT RE LQL Sbjct: 104 AGAVGYLLKDAPPVELTSAVRSAAEGDSALSSMVADRLMTRVRTPRSSLTPRELEVLQLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI ++L LS TV ++L KL +R A+A A G + Sbjct: 164 AGGSSNREIGQELMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 212 >gi|225020347|ref|ZP_03709539.1| hypothetical protein CORMATOL_00354 [Corynebacterium matruchotii ATCC 33806] gi|224946736|gb|EEG27945.1| hypothetical protein CORMATOL_00354 [Corynebacterium matruchotii ATCC 33806] Length = 223 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ SE LA V A+G A +IT L+ + N Sbjct: 96 LRAGASGFIGKGSEPEELARAVRAVANGDALLSPSATRSLITRMLQPTETDPEPYANPEL 155 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+L G +++EIA++L +S+HT ++G+ KL A +R Q + Sbjct: 156 IDALTIREREVLRLVTKGLSNQEIADELVISIHTTKTHVGNIMTKLGAHDRAQLVIVGYE 215 Query: 231 FGYIC 235 G + Sbjct: 216 SGLVA 220 >gi|312140502|ref|YP_004007838.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311889841|emb|CBH49158.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 220 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV----------ITDFLELFKKRSSAARN 173 LG +G+++ + L V + A G +T ++R Sbjct: 97 LGIGASGFLLKDAPAEELIRAVRVVAAGEALLAPSVTKRLIEDVTRRRAAPRRRDRQLET 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIAE+L ++ TV ++G KL +R QA+ A G Sbjct: 157 LTPREREVLELIAAGLSNVEIAERLFVAEQTVKTHVGKVLSKLSLRDRAQAVVMAYESGL 216 Query: 234 IC 235 + Sbjct: 217 VT 218 >gi|310659232|ref|YP_003936953.1| degu [Clostridium sticklandii DSM 519] gi|308826010|emb|CBH22048.1| DegU [Clostridium sticklandii] Length = 211 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 11/121 (9%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL----------ELFKKRSSAAR 172 L NGY++ +E L + +G Y + + + + S Sbjct: 89 TLNLGANGYMLKDAETDSLVKAIEAVYNGGSY-IHPNLAGELFKEINRQRVSRNIKSGVD 147 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L L +G ++++I++ L +S TV ++ S KLD +R QA AI+ Sbjct: 148 SLTRREYEVLLLIAEGMSNKDISDHLVISEKTVKNHVSSILRKLDLQDRTQAAIFAIKQK 207 Query: 233 Y 233 Sbjct: 208 L 208 >gi|302866747|ref|YP_003835384.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302569606|gb|ADL45808.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 225 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLEL-----FKKRSSAA 171 L +G+++ L + V + A G +VI+ F + +A Sbjct: 99 LRAGASGFLLKNGTPEDLIDAVRVVARGEGLIAPALTRRVISTFARPGAAPPDPRHDAAT 158 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE L+L G ++ EIA+ L + TV ++ KL +R+QA+ A Sbjct: 159 ADLTPREREVLELVARGASNAEIADVLHVGEATVKTHVSRVLAKLGLRDRVQAVVFAYEH 218 Query: 232 GYI 234 G + Sbjct: 219 GVV 221 >gi|170076532|ref|YP_001733171.1| response regulator receiver [Synechococcus sp. PCC 7002] gi|169887394|gb|ACB01102.1| Response regulator receiver, LuxR domain [Synechococcus sp. PCC 7002] Length = 231 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-----------QVITDFLELFKKRSSAARNL 174 GY + + L + A GA + Q E+ + + L Sbjct: 99 AQAQGYCLKGVDAESLILAIQSIAAGASWWDAQATQQIRAQFQQPMAEMPRSVPAQDNPL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L L +G ++ EIAE L ++ TV ++ + KL+A +R QA+ A+R G I Sbjct: 159 TQREGEILALIANGKSNSEIAETLYIAASTVRVHVHAILQKLEARDRTQAVVIALRHGLI 218 >gi|300791059|ref|YP_003771350.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800573|gb|ADJ50948.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 218 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF-------KKRSSAARN 173 L +G+++ ++ L + + A G V L+ F + ++ Sbjct: 93 LQGGASGFLLKDTQPDHLVSALRAVASGDAVVSPSVTRRLLDRFVGTGGSPMRDTAELDV 152 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G ++ EIA+ L LS TV ++G KL+ +R+QA+ A G Sbjct: 153 LTDREREVLVLIAKGMSNLEIADALFLSEATVKTHVGRILAKLELRDRVQAVVLAYETGL 212 >gi|305679871|ref|ZP_07402681.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|305660491|gb|EFM49988.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 223 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ SE LA V A+G A +IT L+ + N Sbjct: 96 LRAGASGFIGKGSEPEELARAVRAVANGDALLSPSATRSLITRMLQPTEADPEPYANPEL 155 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+L G +++EIA++L +S+HT ++G+ KL A +R Q + Sbjct: 156 IDALTIREREVLRLVTKGLSNQEIADELVISIHTTKTHVGNIMTKLGAHDRAQLVIVGYE 215 Query: 231 FGYIC 235 G + Sbjct: 216 SGLVA 220 >gi|254521823|ref|ZP_05133878.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14] gi|219719414|gb|EED37939.1| transcriptional regulator, LuxR family [Stenotrophomonas sp. SKA14] Length = 230 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 76/234 (32%), Gaps = 9/234 (3%) Query: 3 ENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSG 62 + L +++ SL + LH I + ++ + L ++ S Sbjct: 2 QALLELERARSLDAVGAVLHGIAAPLGYDRVLVFATGTGLKRGTQRVYWINGDWLGEGSD 61 Query: 63 -DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 D+ L H P W + + V+ G G+ P Sbjct: 62 TDLAGYLHAC---PVNRHVLDSDAPFFWS---KRQGLRGERYQVVKQPRG-EGLHGLQVP 114 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL-TERETS 180 V G + F + + ++ A L + ++ + +L + RE Sbjct: 115 VFGTTGLEGAISFAGTSIDASASARLQLEAAATAAFRAARRLAEVPAALSGSLLSTRERE 174 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G EIA LGLS TV +L A +L QA+ A R G I Sbjct: 175 VLRWVAAGRRQAEIATTLGLSARTVENHLRHARQRLGVATTAQAVRAATRRGEI 228 >gi|302528110|ref|ZP_07280452.1| two-component system response regulator [Streptomyces sp. AA4] gi|302437005|gb|EFL08821.1| two-component system response regulator [Streptomyces sp. AA4] Length = 208 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQL 184 GY++ S L V A G + + R+ A L++RE L L Sbjct: 97 AGATGYLLKDSPREELFRAVRAAARGEAVLSPAVASRIMGQMRAPAQEPLSQREIEVLNL 156 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++E A+KL +S TV +L A KL +R A+A A G + Sbjct: 157 VARGSTNKEAAKKLFISEATVKTHLLHAYAKLGVKDRAAAVAVAFERGLL 206 >gi|296140116|ref|YP_003647359.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296028250|gb|ADG79020.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 215 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 49/118 (41%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTE 176 L G+++ ++ L V A G QV++ FL L+ Sbjct: 93 LRRGAAGFLVKDTDPDHLVQLVRSLAEGGVVLSPKVASQVVSGFLGGVAVDDLGTERLSP 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L DG ++ EI + LSV TV ++ + KL NR+QA A R G + Sbjct: 153 REREVLVLLADGLSNLEIGRTMHLSVGTVKDHVSALLAKLGVANRVQAALVAQRAGLL 210 >gi|317126445|ref|YP_004100557.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590533|gb|ADU49830.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 209 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 48/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + V A G L ++R + L+ RE L+L Sbjct: 100 AGACGYLLKDAPAADLIDAVRTAARGGTVLSPVVARRLDERRRTPQPTLSGRELDVLRLV 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ +IA L LS TV ++L A KL +R A+A A G I Sbjct: 160 AEGGTNRDIARALFLSEATVKSHLVHAFGKLGVTSRTAAVATARSRGLI 208 >gi|152974963|ref|YP_001374480.1| two component LuxR family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023715|gb|ABS21485.1| two component transcriptional regulator, LuxR family [Bacillus cytotoxicus NVH 391-98] Length = 210 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK +LTERE Sbjct: 96 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHDDLTEREFE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R I Sbjct: 156 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRHQLI 209 >gi|271964734|ref|YP_003338930.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507909|gb|ACZ86187.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 218 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA-RNLT 175 L +G+++ + LA V + A G ++I++F + +R ++T Sbjct: 96 LRAGASGFLLKDASAQQLAEAVRVVAAGEALLAPSVTRRLISEFARVGPRRPRGRLDDIT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERET L L G +++EIAE+L LS TV ++G KL+ +R QAI A G + Sbjct: 156 ERETEVLALIAQGRSNQEIAEELVLSEQTVKTHVGRILAKLNLRDRAQAIVHAYETGLV 214 >gi|218506239|ref|ZP_03504117.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli Brasil 5] Length = 215 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 43/175 (24%), Positives = 66/175 (37%), Gaps = 16/175 (9%) Query: 74 DDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLLP----FAGIAFPVRLGFHK 128 D P W +T+I+ L G+ PV + Sbjct: 35 DPVQQVALRTSAPFFWNYDPDADTLIKGFMSEDTAPVTRYLSERDMSTGVTVPVHMPRG- 93 Query: 129 NGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLEL-------FKKRSSAARNLTERET 179 Y T N+ A + A + +I K RS LTERE Sbjct: 94 -DYATVTGIRFGRNNDFERHALRYIADFNLIAHVFHEAAYSLFDRKARSVGTVRLTERER 152 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL+ + +GY+++EI+ + SV TV +L +A KL A NR QA+ +A + + Sbjct: 153 ECLRHSAEGYSAKEISRIIDRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRLL 207 >gi|329731507|gb|EGG67870.1| response regulator protein VraR [Staphylococcus aureus subsp. aureus 21193] Length = 209 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A+ V + G +V+ KKR+ LTERE Sbjct: 95 LDAGVDSYILKTTSAKDIADAVHKTSSGESVFEPEVLVKMRNRMKKRAELYEMLTEREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|319650241|ref|ZP_08004387.1| YhcZ protein [Bacillus sp. 2_A_57_CT2] gi|317398072|gb|EFV78764.1| YhcZ protein [Bacillus sp. 2_A_57_CT2] Length = 215 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 +GY + E +L + G A ++T LT+RE Sbjct: 97 AGASGYQLKDIEPDILVQAITQLMKGENQLHPKATSHLLTHLTNKNSTERQPLEELTKRE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ G +++EIA L ++ TV ++ + KL+ +R QA A+R G Sbjct: 157 LEVLREIAKGKSNKEIASSLYITEKTVKTHVSNLLSKLELADRTQAALYAVRHGI 211 >gi|225593182|gb|ACN96099.1| two-component response regulator [Fischerella sp. MV11] Length = 221 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 12/122 (9%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------------KKRSSAAR 172 GY + L + A GA + T E+ KK S Sbjct: 99 AAGAQGYCLKGIAAEKLVLALRSVAAGASWWDETATQEIRSKFEFNSTEDYTKKASITVN 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G T++EIAE L ++ TV ++ + KL+ +R QA+ A++ G Sbjct: 159 PLTQREQEILSLIAQGKTNQEIAEALYITTGTVRVHVHTILHKLEVRDRTQAVIVAMQAG 218 Query: 233 YI 234 I Sbjct: 219 LI 220 >gi|54022382|ref|YP_116624.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54013890|dbj|BAD55260.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 220 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA-RNLT 175 + G+++ +E L V + A G ++IT+F K+ AA LT Sbjct: 97 MRAGATGFLVKHTEPADLVRAVRVVAAGDALLSPGVTRRLITEFAAHAKQPPPAALAELT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE + L +G T+ EI +L LS T ++ KL A +R Q + A G + Sbjct: 157 DREREVMALVAEGLTNAEIGARLYLSPATARTHVSRILTKLGARDRTQLVVLAYESGLV 215 >gi|323702109|ref|ZP_08113777.1| two component transcriptional regulator, LuxR family [Desulfotomaculum nigrificans DSM 574] gi|323532991|gb|EGB22862.1| two component transcriptional regulator, LuxR family [Desulfotomaculum nigrificans DSM 574] Length = 218 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------LTER 177 +GYV+ L ++ A G + + L F + +S + LTER Sbjct: 100 GISGYVLKDVHPDQLIQTILGVARGESFIPPALTAKVLAEFSRLTSVDHHDKKHSTLTER 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+ G ++++IA+ L +S TV +L + K+ +R QA AI+ + Sbjct: 160 ELEVLKQVAKGQSNKDIAKTLFISEKTVKNHLTNIFQKIGVADRTQAALYAIKEKLV 216 >gi|320547873|ref|ZP_08042156.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] gi|320447413|gb|EFW88173.1| DNA-binding response regulator [Streptococcus equinus ATCC 9812] Length = 214 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + A G A + ++ ++ +LT RE L+ Sbjct: 99 AGAKGYMLKTSSAAEILNAIHKVARGDLAIETEVDKKIKAHDQKPELHEDLTARERDILK 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 159 LLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFKHHLV 209 >gi|325675879|ref|ZP_08155563.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|325553850|gb|EGD23528.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 222 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV----------ITDFLELFKKRSSAARN 173 LG +G+++ + L V + A G +T ++R Sbjct: 99 LGIGASGFLLKDAPAEELIRAVRVVAAGEALLAPSVTKRLIEDVTRRRAAPRRRDRQLET 158 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIAE+L ++ TV ++G KL +R QA+ A G Sbjct: 159 LTPREREVLELIAAGLSNVEIAERLFVAEQTVKTHVGKVLSKLSLRDRAQAVVMAYESGL 218 Query: 234 IC 235 + Sbjct: 219 VT 220 >gi|290954729|ref|YP_003485911.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260644255|emb|CBG67336.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLE----LFKKRSSAAR 172 L +G+++ + L V + A G ++I DF + K + + Sbjct: 99 LRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTRRLIADFARQRPAVRGKPALRLK 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA+ L L+ TV ++ KLD +R QA+ A G Sbjct: 159 RLTERETEVLTLVARGQSNGEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESG 218 Query: 233 YIC 235 + Sbjct: 219 LVA 221 >gi|134299954|ref|YP_001113450.1| two component LuxR family transcriptional regulator [Desulfotomaculum reducens MI-1] gi|134052654|gb|ABO50625.1| two component transcriptional regulator, LuxR family [Desulfotomaculum reducens MI-1] Length = 218 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR--NLTER 177 +GYV+ L ++ A G + +V+ +F L S + NLTER Sbjct: 100 GISGYVLKDIHPDQLIKTILGVAQGESFIPPSLTARVLAEFTRLSSGDYSEKKHLNLTER 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+ G +++ IA L +S TV +L + K+ +R QA AI+ + Sbjct: 160 EIEVLKQVAKGQSNKAIANALYISEKTVKNHLTNIFQKIGVADRTQAALYAIKEKLV 216 >gi|218134363|ref|ZP_03463167.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC 43243] gi|217989748|gb|EEC55759.1| hypothetical protein BACPEC_02257 [Bacteroides pectinophilus ATCC 43243] Length = 218 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 50/114 (43%), Gaps = 6/114 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTERETS 180 +GYV+ S+ L + G Y ++ L + +LT+RE Sbjct: 102 GCDGYVLKDSDSATLRKAITAVHMGEGYVEPSLTPLLNSSLVERDIMTGKVNDLTKRELQ 161 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G + EIA +L +S TV ++ + K++ +R QA AI+ + Sbjct: 162 VLKLIANGMFNREIAVQLKISERTVKNHISNIFRKINVSDRTQAAVFAIKNKIV 215 >gi|54025090|ref|YP_119332.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54016598|dbj|BAD57968.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 219 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF-------KKRSSAARN 173 L +G+++ + L + V A G +V L+ + ++ Sbjct: 95 LRAGASGFLLKDTPPEDLVSAVRSVAAGDAVVSPKVTKRLLDRLIADDPAGMRDAAVLDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ G ++ EIA +L LS TV ++G KL +R+QA+ A G Sbjct: 155 LTAREREVLEQIAAGRSNAEIAAELFLSEATVKTHVGRVLTKLGLRDRVQAVVLAYETGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|228924157|ref|ZP_04087433.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228835647|gb|EEM81012.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 214 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF----------LELFKKRSSAARN 173 L +GY++ E L + G Q+ D +E ++ S Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNI-QLHPDIANALLSQTLPVEEKEEEPSIVDV 153 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 154 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 213 Query: 234 I 234 + Sbjct: 214 V 214 >gi|229009717|ref|ZP_04166941.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048] gi|228751597|gb|EEM01399.1| hypothetical protein bmyco0001_1910 [Bacillus mycoides DSM 2048] Length = 214 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 11/120 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK--------RSSAAR 172 L +GY++ E +A ++ G + +E KK + Sbjct: 90 LEQGASGYLLKDMETDAIAQAILTVYSGGVVLPQDITAQIIEELKKTKVAVECNPPEQLK 149 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 150 QLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 >gi|83588897|ref|YP_428906.1| two component LuxR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83571811|gb|ABC18363.1| two component transcriptional regulator, LuxR family [Moorella thermoacetica ATCC 39073] Length = 221 Score = 106 bits (264), Expect = 3e-21, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKR-------SSAARN 173 L GYV+ + L + + A G Y Q+ +E ++R Sbjct: 96 LESGARGYVLKRAGIEELTTAIRLVARGEAYLDPQIARRVIEGLQERLPFTRASRPEGPE 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+LA +G T+ EIA +L +SV TV A+ + KL +R+ + AI+ G Sbjct: 156 LTERELEVLRLAAEGLTNAEIARRLVISVKTVQAHRANIMQKLGLHDRVDLVKYAIKNGI 215 Query: 234 I 234 + Sbjct: 216 L 216 >gi|307324556|ref|ZP_07603763.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306889800|gb|EFN20779.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 225 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L +G+++ + LA+ V + A G ++I +F + Sbjct: 98 LRAGASGFLLKDASADELAHAVRVVAAGDALLAPNITKRLIGEFSRVSAAAPRGPLRDRV 157 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERET L L G ++ EIA +L ++ TV ++ KL +R QA A Sbjct: 158 GDLTERETEVLTLIAQGLSNAEIAARLVVAEQTVKTHVSRILFKLGLRDRTQAAVFAYET 217 Query: 232 GYI 234 G + Sbjct: 218 GLV 220 >gi|259418455|ref|ZP_05742373.1| transcriptional regulatory protein DegU [Silicibacter sp. TrichCH4B] gi|259345850|gb|EEW57694.1| transcriptional regulatory protein DegU [Silicibacter sp. TrichCH4B] Length = 212 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 3/113 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSC 181 L G ++ T+ L NEV A G Y + D +E K + + + L++RET+ Sbjct: 101 LSLGGAGLILKTTSLKDLGNEVNFIAAGGRY-IPVDLIETQRVKTQDTTSTPLSDRETTV 159 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G ++EI L L+ TV ++ S KL A NR QA+ A I Sbjct: 160 LNLLAEGKPNKEIGSDLNLAEPTVKMHVKSICTKLGASNRTQAVIVARDLNLI 212 >gi|313679613|ref|YP_004057352.1| two component LuxR family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313152328|gb|ADR36179.1| two component transcriptional regulator, LuxR family [Oceanithermus profundus DSM 14977] Length = 219 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 50/116 (43%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR-NLTER 177 GY++ + L + V G Q+I DF A +LT+R Sbjct: 99 AGARGYLLKDVDAEALVDAVRRVNEGEVLLDAELAEQIIHDFRAKRDVLPQAHHADLTDR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L+L G T++EIA++LG+S TV L KL NR QA AIR G Sbjct: 159 EVQILRLLAQGATNQEIADELGISEKTVRNRLSEIFSKLHLNNRTQAALYAIREGL 214 >gi|308179160|ref|YP_003918566.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307746623|emb|CBT77595.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 234 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF--------------KK 166 L + +++ L + V + A G +V LE + K Sbjct: 99 LQAGASAFLLKDVAPEELVHAVRLVASGDAVVAPRVTARLLETYVRNAGHGVPGQAAEPK 158 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R +LT RE L+ +G ++ EIA + LS TV ++ KL +R+QA+ Sbjct: 159 RDPLLDDLTPREQEVLRALAEGLSNAEIAHRFFLSEATVKTHVRRILTKLHLRDRVQAVV 218 Query: 227 KAIRFGYI 234 A G + Sbjct: 219 YAYETGLV 226 >gi|315503162|ref|YP_004082049.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315409781|gb|ADU07898.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 225 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLEL-----FKKRSSAA 171 L +G+++ L + V + A G +VI+ F + +A Sbjct: 99 LRAGASGFLLKNGTPEDLIDAVRVVARGEGLIASALTRRVISTFARPGAAPPDPRHDAAT 158 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE L+L G ++ EIA+ L + TV ++ KL +R+QA+ A Sbjct: 159 ADLTPREREVLELVARGASNAEIADVLHVGEATVKTHVSRVLAKLGLRDRVQAVVFAYEH 218 Query: 232 GYI 234 G + Sbjct: 219 GVV 221 >gi|297203696|ref|ZP_06921093.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197711744|gb|EDY55778.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 106 bits (264), Expect = 4e-21, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 13/123 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN----- 173 +G+++ L + V + A G +++ D + ++ ++ Sbjct: 96 AGASGFLLKDVRRDDLVHAVRVVAGGDSLLAPTITRRLVADIVRRRREEAATGATPDRLD 155 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L++ G ++ EIA L +S HTV ++ + KL +R+QA+ A G Sbjct: 156 ALTAREVEILRMLARGLSNAEIATTLFVSEHTVKTHVSNVLSKLGLRDRVQAVICAYETG 215 Query: 233 YIC 235 + Sbjct: 216 LVA 218 >gi|293491178|gb|ADE45143.1| transcriptional regulator [Xanthomonas campestris pv. mangiferaeindicae] Length = 254 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 67/191 (35%), Gaps = 21/191 (10%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF--- 115 GD+ ++ E D P +W T G V + + Sbjct: 65 GDMQHVWCEHGYYQHDPVQQRATRRTTPFVWS---YRTDGHCPGVEYVGGQHRQVTRYLC 121 Query: 116 -----AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------ 164 G+ P+ L + + EA + ++ + Sbjct: 122 DSDMGTGVTVPLHLPGGAFATFSGAIDAAAAQAPRLAEAQLLPFLLLAHAFQSRAQELLD 181 Query: 165 -KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 ++R LT RE CLQ + G TS+ IA L S TVN +L SA KL A NR++ Sbjct: 182 PQERRCHHIALTRRERECLQYSAKGLTSKRIAAALNRSTATVNLHLNSAARKLGARNRVE 241 Query: 224 AIAKAIRFGYI 234 A+ + + + + Sbjct: 242 AVVRGMHYRLL 252 >gi|87309494|ref|ZP_01091629.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] gi|87287802|gb|EAQ79701.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] Length = 210 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 6/116 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTERE 178 NGYV+ L + + A+G + +T L + + LT+RE Sbjct: 95 ALGANGYVLKGDPRDRLVDAIHTAANGESAWTRDELRRVTGALATPRLNADVEVPLTQRE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L+ G T++EIA+ L +S TV ++ K+ +R QA A+R G + Sbjct: 155 SEVLRQLALGLTNKEIAQALHISYETVKEHVQHILRKVGVSDRTQAAVWAVRKGLV 210 >gi|317130322|ref|YP_004096604.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315475270|gb|ADU31873.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 232 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 53/131 (40%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRS-------- 168 L +GY++ + L V + G Y +I ++ +L + Sbjct: 99 LKTGASGYLLKEMDTEALIEAVKVVGEGGAYIHPKVTHNLINEYRKLANEDRLEPEVGFR 158 Query: 169 -----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQL DG ++ I E L +S TV ++ + K+ +R Q Sbjct: 159 EVEFRRPLHLLTRRECEVLQLMTDGKSNRAIGEALYISEKTVKNHVSNILQKMGMNDRTQ 218 Query: 224 AIAKAIRFGYI 234 A+ AI+ G++ Sbjct: 219 AVVDAIKNGWV 229 >gi|66767622|ref|YP_242384.1| AhyR/AsaR family transcriptional regulator [Xanthomonas campestris pv. campestris str. 8004] gi|66572954|gb|AAY48364.1| transcriptional regulator ahyR/asaR family [Xanthomonas campestris pv. campestris str. 8004] Length = 254 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 64/188 (34%), Gaps = 15/188 (7%) Query: 62 GDIPNILIET---YGDDFLFHFNSGLLPIIWQSIQEETV-----IESSGQLSVRLEGGLL 113 D+ N+ E D P +W E + + R Sbjct: 65 DDMHNVWCEHGYYQNDPVQQRATRRTTPFVWSYRTEGRTEGVEYVGDQHRQVTRYLCDSD 124 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KK 166 G+ P+ L + EA + ++ + ++ Sbjct: 125 MGTGVTVPLHLPGGAFATFSAAVNVTQAEAPRLAEAQLPPFLLLAHAFQARAQELLDPQE 184 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R LT RE CLQ + G T++ IA L S TVN +L SA KL A NR++A+ Sbjct: 185 RRCHHIALTRRERECLQYSAKGMTAKSIAATLNRSTATVNLHLNSAARKLGARNRVEAVV 244 Query: 227 KAIRFGYI 234 + + + + Sbjct: 245 RGMHYRLL 252 >gi|238023440|ref|YP_002907673.1| DNA-binding HTH domain-containing protein [Burkholderia glumae BGR1] gi|237880493|gb|ACR32822.1| DNA-binding HTH domain-containing protein [Burkholderia glumae BGR1] Length = 235 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 45/230 (19%), Positives = 76/230 (33%), Gaps = 14/230 (6%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 S S + + +L +++ F P + + NY + + Sbjct: 14 SDSSRVVFDKLVGYASQL---GFDYCCYGFRSPLPVGGESVKVFDNYPNGWMEHYRHMGY 70 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 D + + I W E S + GL GIA P G Sbjct: 71 IDVDPTVEKAMTCSQTICWPGFDESK---QSAFWQDARDHGLKV--GIAQPSWSARGAFG 125 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTERETSCLQL 184 + + + + AA +LTERE L+ Sbjct: 126 LLSLARGEGEIDGHELKRLSLQLSWITNAVHSAMTAHVFDSLGLGAAISLTERERQVLRW 185 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G + +I+EKL +SV TVN ++G K A N++QA A+A+ + Sbjct: 186 TVEGLNAFDISEKLNISVSTVNWHIGKVLAKFGATNKVQAAARAVALNLL 235 >gi|257057888|ref|YP_003135720.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587760|gb|ACU98893.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 216 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRS--SAARNLTE 176 +GY++ ++ L + V A G V+ ++ + LTE Sbjct: 96 AGASGYLVKSASVAELVDAVRRTAEGDPVFTAGLAGMVLGEYRRMADSPDMGDPPPRLTE 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+L G T+++IA++L +S TV ++ S KL NR++ AI G Sbjct: 156 RETEVLRLVAKGLTAKQIADRLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 212 >gi|15966568|ref|NP_386921.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|307300395|ref|ZP_07580175.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318260|ref|ZP_07597695.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15075839|emb|CAC47394.1| Transcription regulator LuxR family [Sinorhizobium meliloti 1021] gi|306895942|gb|EFN26693.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306904561|gb|EFN35145.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 260 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 70/204 (34%), Gaps = 28/204 (13%) Query: 51 ICELHNYDLDSGDIPNILIET-YG--DDFLFHFNSGLLPIIWQSIQE-----ETVIESSG 102 + +L N D D + Y D P W + + Sbjct: 57 LLKLRNISEDMHDY---WFDRGYFRIDPVQQVALRTSTPFFWNYDPDADTLIRRFMSDDT 113 Query: 103 QLSVRLEGGLLPFAGIAFPVRLGFHKNG---YVIFTSEFLMLANEVIIEA---------H 150 R G+ PV + V F + + A H Sbjct: 114 APVARYLSERDMSTGVTVPVHMPRGDYATVTGVRFGGNRAFEGHALRYIADFNLLAHVFH 173 Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 A Y + + ++ LTERE CL+ + +G++++EI+ + SV TV +L Sbjct: 174 EAAYSLFD-----AQAFNAGTARLTERERECLRYSAEGHSAKEISRIIHRSVPTVVMHLN 228 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 +A KL A NR QA+ +A + + Sbjct: 229 AAAKKLGAKNRTQAVVRATHYRLL 252 >gi|238926042|ref|YP_002939560.1| two-component response regulator (extracellular proteinase response regulator) [Eubacterium rectale ATCC 33656] gi|238877719|gb|ACR77426.1| two-component response regulator (extracellular proteinase response regulator) [Eubacterium rectale ATCC 33656] gi|291526556|emb|CBK92143.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium rectale DSM 17629] gi|291529198|emb|CBK94784.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Eubacterium rectale M104/1] Length = 214 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 6/114 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDF-LELFKKRSSAAR--NLTERETS 180 NGYV+ SE L + A G Y +I ++ +K + LT+RE Sbjct: 98 GINGYVLKDSESAELKKAIFTIADGETYIQPSLIPALNSKMIQKNEDELKIDALTKREME 157 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G + +IA+++ +S TV ++ S KL+ +R QA AIR I Sbjct: 158 VLKEMAVGKFNRDIAKEMKISERTVKNHISSIFKKLEVTDRTQAAVFAIRNNII 211 >gi|239944210|ref|ZP_04696147.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990666|ref|ZP_04711330.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447682|ref|ZP_06587072.1| two-component system regulator [Streptomyces roseosporus NRRL 15998] gi|291350629|gb|EFE77533.1| two-component system regulator [Streptomyces roseosporus NRRL 15998] Length = 224 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAAR-------- 172 L +G+++ + LA+ V + A G + + F + + A R Sbjct: 98 LRAGASGFLLKDASADELAHAVRVVASGDALLSPNITKRLIVEFSRTAGAPRAPLKERVG 157 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERET L L G ++ EIA +L ++ TV ++G VKL +R QA A G Sbjct: 158 DLTERETEVLTLIASGLSNAEIARQLIVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 217 Query: 233 YI 234 + Sbjct: 218 LV 219 >gi|258650732|ref|YP_003199888.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553957|gb|ACV76899.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 214 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L G+++ T+ L V A G +++ ++ + LT Sbjct: 95 LRAGAAGFLLKTTPPRDLIRSVRQCAAGETTVGPTVMARLVDSYVGHQEPPPPGLAELTG 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+ DG ++ EIA +L L+ TV ++ KL +R+QA+ A R G Sbjct: 155 RELDVLRCLADGRSNAEIAGELFLAETTVKTHVARILAKLGVRDRVQAVVIAHRCGL 211 >gi|298244102|ref|ZP_06967908.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551583|gb|EFH85448.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 216 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFK--KRSSAARNL 174 L +GY++ + L + + G Y ++ D+L+ K + + +L Sbjct: 95 LRAGASGYMLKEAADTELITALHVILSGQFYLSPAAQSVMVGDYLQRSKTGEEKDSYSSL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+L +G+T+ +IAE+L +S TV+ + KL+ +R + + A+R G + Sbjct: 155 TEREREILKLVAEGFTNNQIAERLVISPKTVDTHRTHIMDKLNLHSRAELVKYAMRRGLL 214 >gi|297199099|ref|ZP_06916496.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|297147291|gb|EDY59218.2| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 224 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 14/121 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSA-------AR 172 GY++ ++ L + V A G V+ ++ L + A A Sbjct: 101 GATGYLLKSASTEELLDAVRRTAVGDPVFTPGLAGLVLGEYRRLASDPAPASDPDRPRAP 160 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 161 ELTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERG 220 Query: 233 Y 233 Sbjct: 221 L 221 >gi|158317264|ref|YP_001509772.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158112669|gb|ABW14866.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 250 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 11/119 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK----KRSSAARNL 174 GY++ + +A+ V +G +++ +F + + + + A +L Sbjct: 128 AGAVGYLLKSIPPHEVADAVRAVHNGQSLISPSMASKLMVEFATMARGGEDRPRAHAPHL 187 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+L +G + EIA KL +S +TV ++ + KL +R++A+ A+R G Sbjct: 188 TARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 246 >gi|330685558|gb|EGG97204.1| response regulator protein VraR [Staphylococcus epidermidis VCU121] Length = 209 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A V +G +V+ KKR+ LTERE Sbjct: 95 LDAGVDSYILKTTSASDIAEAVRKTYNGESVFEPEVLVKMRNRMKKRAELYEMLTEREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|302519720|ref|ZP_07272062.1| LOW QUALITY PROTEIN: two component system response regulator [Streptomyces sp. SPB78] gi|302428615|gb|EFL00431.1| LOW QUALITY PROTEIN: two component system response regulator [Streptomyces sp. SPB78] Length = 140 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA---RNL 174 G +G+++ + L V + A G ++I DF A + L Sbjct: 16 GPGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFARQRPAPGKPALRLKAL 75 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERET L L G ++ EIAE L L+ TV ++ KL +R QA+ A G + Sbjct: 76 TERETEVLTLVARGRSNTEIAESLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESGLV 135 Query: 235 C 235 Sbjct: 136 A 136 >gi|254385617|ref|ZP_05000941.1| response regulator [Streptomyces sp. Mg1] gi|194344486|gb|EDX25452.1| response regulator [Streptomyces sp. Mg1] Length = 210 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 49/110 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L N V A G + +LF+ R A L+ERE LQL Sbjct: 101 AGAAGYLLKGSSREELVNAVKAAARGETVLTPSLAPKLFRARVVEAPVLSERECEVLQLV 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G T+ +I +L +S TV +L + KL +R A+ A+ G + Sbjct: 161 RQGLTNADIGRRLFISEATVKTHLLRSFKKLSVSDRTAAVITALERGLLS 210 >gi|21242903|ref|NP_642485.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21108399|gb|AAM37021.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 213 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ ++ L + + G V E L+ RET L Sbjct: 100 LQAGACGYLLKSALRRELVDTIRDVRRGQRRHVPASVAENIAAH-VLDDALSARETEVLN 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G ++++I L +S TV A++ + KL +R A+ A+R G + Sbjct: 159 LVATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALRRGILS 210 >gi|325686912|gb|EGD28936.1| DNA-binding response regulator [Streptococcus sanguinis SK72] Length = 210 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L +GY++ TS + V A G A ++ +E + +LT RE Sbjct: 91 PV-LDAGAHGYMLKTSSAEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTARE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 150 RDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205 >gi|51893278|ref|YP_075969.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51856967|dbj|BAD41125.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 197 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKK---RSSAARN 173 L + Y++ S L + G V+ ++ + + Sbjct: 75 LRAGADAYIVKRSAAADLVGAIRAVMEGQAVLDPAVTRAVVEGYVSRPGRAVGQPEEPCP 134 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L +G T+ EIA +L +S TV + + KL +R + + AIR G Sbjct: 135 LTPREREILVLIAEGLTNAEIARRLYISEKTVQTHRSNMLDKLGIHDRTELVRYAIRQGL 194 Query: 234 I 234 + Sbjct: 195 V 195 >gi|324994067|gb|EGC25981.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|327459273|gb|EGF05619.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327490491|gb|EGF22272.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] Length = 210 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L +GY++ TS + V A G A ++ +E + +LT RE Sbjct: 91 PV-LDAGAHGYMLKTSSAEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTARE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 150 RDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205 >gi|297560440|ref|YP_003679414.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844888|gb|ADH66908.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 234 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L +G+++ + L + V + A GA +++ F L S A Sbjct: 99 LRAGASGFLLKDAPPAELVSAVEVVADGAAAISPAVLNRLLDRFAPLLPSASPATEPAED 158 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G+++ EIA L L TV +++GS KL+ +R+QA+ A G Sbjct: 159 TLTAREHEVLRLLARGWSNAEIAAHLVLGETTVKSHVGSILTKLELRDRVQAVVYAYEHG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|188586689|ref|YP_001918234.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351376|gb|ACB85646.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 212 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 61/117 (52%), Gaps = 3/117 (2%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA-CYQ-VITDFLELFKKRSSAARNLTE 176 FP L Y++ TS+ +A + + G ++ +T + ++ SA NLT Sbjct: 95 VFPA-LEAGAYSYILKTSDAEDIAKCIRKASEGKPSFEGQVTKLMMERRENESAYLNLTN 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+L G G+T++EIA++L + + TV ++ + KL+ +R QA A +GY Sbjct: 154 REKEVLRLLGKGFTNQEIADELYIGIKTVKTHVSNILDKLELKDRTQAAIYAKDYGY 210 >gi|148658346|ref|YP_001278551.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570456|gb|ABQ92601.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 216 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERE 178 GY++ + L + G + + + + ++ + +L+ERE Sbjct: 100 AGAMGYLLKDAPAEALLQTIRRVHAGEVFIQPEIASRTLREAATGRRRAGTIPFDLSERE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G ++ EIA +L ++ TV ++ + KL A NR QA A R G Sbjct: 160 REVLVLLAQGLSNREIAGRLSITEGTVKNHVSNILAKLQAENRTQAANIARREGL 214 >gi|256390165|ref|YP_003111729.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356391|gb|ACU69888.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 221 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 15/125 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKR--------SSA 170 +G+++ L + V + A G ++I D R S+ Sbjct: 92 AGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPSVTRRLIADVTSRRPARAGDPGAAPSAR 151 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L G ++ EIA +L +S HTV ++ + +KL +R+ A+ A Sbjct: 152 LDALTPRERETLLLMARGASNAEIAARLFVSEHTVKTHVSNILMKLGLRDRVHAVIFAYD 211 Query: 231 FGYIC 235 G + Sbjct: 212 SGLVT 216 >gi|229055057|ref|ZP_04195489.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603] gi|228721329|gb|EEL72853.1| hypothetical protein bcere0026_1950 [Bacillus cereus AH603] Length = 214 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 11/120 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK--------RSSAAR 172 L +GY++ E +A ++ G + +E KK + Sbjct: 90 LEQGASGYLLKDMETDAIAQAILTVHSGGVVLPQDITAQIIEELKKTKVAVECNPPEQLK 149 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 150 QLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 >gi|147677779|ref|YP_001211994.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146273876|dbj|BAF59625.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 217 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELF--KKRSSAARNLTE 176 +GYV+ +L ++ G + +V +F L R S LT Sbjct: 98 AGISGYVLKDISPDLLIQTILGVTRGESFIPPSMTAKVFAEFTRLSTISSRYSHPLGLTR 157 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G ++ IA+KL +S TV +L S KL +R QA A++ I Sbjct: 158 REVDVLRLVAQGDSNRSIAQKLFISEKTVKNHLTSIFQKLGVDDRTQAALHAVKNKII 215 >gi|320334192|ref|YP_004170903.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755481|gb|ADV67238.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 211 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETS 180 L + Y + + + +L + A G+ Y QV L + + L++RET Sbjct: 98 LASGADAYCLKSGDPALLPLAIQAAAAGSAYLDPQVAHLVLGVVRAPDGEVSALSDRETE 157 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ DG +++EIA LG+SV TV ++ KL A +R A KA+R G + Sbjct: 158 VLRRVADGLSNKEIARDLGVSVSTVKVHVQDILTKLSASDRTHAAVKALRAGLL 211 >gi|327472699|gb|EGF18126.1| DNA-binding response regulator [Streptococcus sanguinis SK408] Length = 210 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L +GY++ TS + V A G A ++ +E + +LT RE Sbjct: 91 PV-LDAGAHGYMLKTSSTEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTARE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 150 RDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205 >gi|319650145|ref|ZP_08004294.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317398326|gb|EFV79015.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 212 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 5/120 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSS-AARNL 174 FP + Y++ T+ + N + A G +V + F+++ +L Sbjct: 90 VFPA-IEAGAFSYMLKTANAAEVVNAIKKAAQGESVIESKVAGKMVSRFREKEKKPHDDL 148 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L G+G T++EI+E+L + + TV ++ + KL +R QA A R G I Sbjct: 149 TEREFDVLLCIGEGMTNQEISEELFIGIKTVKTHVSNILSKLGVTDRTQAAVYANRNGII 208 >gi|228476314|ref|ZP_04061015.1| response regulator protein VraR [Staphylococcus hominis SK119] gi|314936061|ref|ZP_07843410.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp. hominis C80] gi|228269597|gb|EEK11103.1| response regulator protein VraR [Staphylococcus hominis SK119] gi|313655878|gb|EFS19621.1| DNA-binding response regulator VraR [Staphylococcus hominis subsp. hominis C80] Length = 209 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A V G +V+ KK++ LTERE Sbjct: 95 LDAGVDSYILKTTSASDIAEAVRKTYRGESVFEPEVLVKMRNRMKKKAELYEMLTEREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|222153503|ref|YP_002562680.1| response regulator protein [Streptococcus uberis 0140J] gi|222114316|emb|CAR42990.1| response regulator protein [Streptococcus uberis 0140J] Length = 213 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV GY++ TS + N + A G A + ++ ++ + LT RE Sbjct: 94 PVIDA-GAKGYMLKTSSAAEILNAIQKVAKGQLAIETEVDKKIKAHDRKPNLHDELTARE 152 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 153 YDILYLLAKGYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFRHHLV 208 >gi|239981289|ref|ZP_04703813.1| two component system DNA binding response regulator [Streptomyces albus J1074] gi|291453147|ref|ZP_06592537.1| two component system DNA binding response regulator [Streptomyces albus J1074] gi|291356096|gb|EFE82998.1| two component system DNA binding response regulator [Streptomyces albus J1074] Length = 211 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 48/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G L ++ + L+ RET L L Sbjct: 101 AGATGYLLKDAPPEELAEAVRTAAAGRTTLAPAVADRLLRRMRTPGTALSRRETEVLGLV 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ I+E+L LS TV ++L KL +R A+A A+ G I Sbjct: 161 AEGMSNLRISERLHLSQATVKSHLVHIYAKLGVDSRTAAVAAALERGLI 209 >gi|37519948|ref|NP_923325.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35210940|dbj|BAC88320.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 212 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 2/112 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTERETSC 181 L +GY + E L ++ G + + +L + LT RE Sbjct: 98 LQAGIDGYCVKGIEPEQLLQAILQVRSGHVWWDGRVAAYLRSGPEPERRDYQLTPRERQV 157 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L +G ++++I +L +SV TV ++ + KL A +R QA A++ G Sbjct: 158 LGLLANGLSNQQIGRQLFISVGTVQVHVHTILRKLGARDRTQAAILALQEGL 209 >gi|325695228|gb|EGD37129.1| DNA-binding response regulator [Streptococcus sanguinis SK150] Length = 210 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L +GY++ TS + V A G A ++ +E + +LT RE Sbjct: 91 PV-LDAGAHGYMLKTSSAEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTARE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 150 RDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205 >gi|300869019|ref|ZP_07113622.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300332999|emb|CBN58814.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 228 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 10/121 (8%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGAC----------YQVITDFLELFKKRSSAARNL 174 GY + L + A GA IT+ F +S L Sbjct: 100 AAGVQGYCLKGIAAETLVLAIRSVAAGASWWDKAATTEIRSAITNNESKFVPKSELENPL 159 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L L G +++EIA+ L ++ TV ++ + KL+ +R QA AI+ G + Sbjct: 160 TKREQEILALVAAGKSNQEIAQILYIASGTVRVHVHAILQKLEVRDRTQAAVVAIQKGLV 219 Query: 235 C 235 Sbjct: 220 A 220 >gi|229131218|ref|ZP_04260124.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196] gi|228652209|gb|EEL08140.1| hypothetical protein bcere0014_1930 [Bacillus cereus BDRD-ST196] Length = 214 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 11/120 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK--------RSSAAR 172 L +GY++ E +A ++ G + +E KK + Sbjct: 90 LEQGASGYLLKDMETDAIAQAILTVHSGGVVLPQDITAQIIEELKKTKVAVECNPPEQLK 149 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 150 QLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 >gi|37223199|gb|AAQ90194.1| LuxR [Vibrio parahaemolyticus] Length = 208 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 75/194 (38%), Gaps = 9/194 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K+ S ++++ L + + Y + + I + NY + Sbjct: 19 KRCRSNKDINQCLSDMTKMVHCE---YYLLAIIYPHCMVKSDISIVDNYPKKWRQYYDDA 75 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + NS PI W + V + S + ++ G +FP+ + Sbjct: 76 NLIKYDPIVDYSNSNHSPINWNIFENNAVNKKSPNV-IKEAKSSGLITGFSFPIHTANNG 134 Query: 129 NGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKK----RSSAARNLTERETSCLQ 183 G + F SE + + ++A ++ ++ ++K + + +LT+RE CL Sbjct: 135 FGMLSFAHSEKDNYIDSLFLQACMNIPLIVPSLVDNYRKINIANNKSNXDLTKREKECLA 194 Query: 184 LAGDGYTSEEIAEK 197 A +G +S +I++ Sbjct: 195 WACEGKSSWDISKI 208 >gi|320449580|ref|YP_004201676.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01] gi|320149749|gb|ADW21127.1| transcriptional regulatory protein DegU [Thermus scotoductus SA-01] Length = 217 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 GY++ ++ L + G ++I DF + L+ERE Sbjct: 96 AGARGYLLKDTDASELIGAIRRVHAGEVLLDAELAGRIIQDFRAKKESSLPLHAELSERE 155 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L GYT+ EIA +L LS TV L KL NR QA AIR G Sbjct: 156 IQILKLVAQGYTNLEIAAELQLSEKTVRNRLSEIFQKLHLNNRTQAALYAIREGL 210 >gi|26991331|ref|NP_746756.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|24986392|gb|AAN70220.1|AE016661_6 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] Length = 279 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 17/188 (9%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 + P+ IE Y D +S +P++W + + + + Q Sbjct: 97 YLYSNYPSEWIERYQRDDFYKQDPAANLSHSSTMPVLWT----DELYKEAPQFREMA-CL 151 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--- 168 G + H + + + + G+ + + + Sbjct: 152 YGLRHGWTQSLHDQQHNESQISVARPNGPIDEVELYDKAGSVQWLCHTLHAVLGEHHLNA 211 Query: 169 --SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ERE L+ + G T+ ++A L LS TVN ++ S K +A N+ AIA Sbjct: 212 LCPPQPKMSERELEVLKWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAIA 271 Query: 227 KAIRFGYI 234 A G+I Sbjct: 272 IAALRGWI 279 >gi|327462458|gb|EGF08783.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] gi|332362992|gb|EGJ40781.1| DNA-binding response regulator [Streptococcus sanguinis SK49] gi|332364570|gb|EGJ42339.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] gi|332366354|gb|EGJ44105.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 210 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L +GY++ TS + V A G A ++ +E + +LT RE Sbjct: 91 PV-LDAGAHGYMLKTSSAEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTARE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 150 RDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205 >gi|291442172|ref|ZP_06581562.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291345067|gb|EFE72023.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 224 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL----ELFKKRSSAAR 172 L +G+++ + L V + A G ++I DF + K + + Sbjct: 99 LRAGASGFLLKNAPPADLIAAVRVVASGDALLAPSVTRRLIADFAKQRPAVRGKPALRLK 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA+ L L+ TV ++ KLD +R QA+ A G Sbjct: 159 GLTERETEVLTLVARGQSNGEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESG 218 Query: 233 YIC 235 + Sbjct: 219 LVA 221 >gi|271498689|ref|YP_003331714.1| LuxR family transcriptional regulator [Dickeya dadantii Ech586] gi|270342244|gb|ACZ75009.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech586] Length = 250 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 72/196 (36%), Gaps = 26/196 (13%) Query: 62 GDIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSGQLS--VRLEGGL 112 + P+ +E Y ++ H + +L P W ++ VI S + S L Sbjct: 48 SNYPSEWVEIYRNNNYQHIDPVILTAINRISPFSW---DDDLVISSKLKFSRIFNLSKEY 104 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANE-------VIIEAHGACYQVITD 159 G F + + + F + E + ++I AH + + Sbjct: 105 DIVNGYTFVLHDPANNLATLSFMFEENRSGELEEIVQNNKEKLQMLLISAHEKLTSLYRE 164 Query: 160 FLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + S NL ++RE L A G T +EIA LG++ TV ++G+ KL Sbjct: 165 MSKNRNNSKSQEPNLFSQRENEILYWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGV 224 Query: 219 VNRIQAIAKAIRFGYI 234 +N AI + I Sbjct: 225 LNAKHAIRLGVEMNLI 240 >gi|91794405|ref|YP_564056.1| response regulator receiver [Shewanella denitrificans OS217] gi|91716407|gb|ABE56333.1| two component transcriptional regulator, LuxR family [Shewanella denitrificans OS217] Length = 219 Score = 105 bits (263), Expect = 4e-21, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 3/118 (2%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTE 176 F L NG+++ L N + + A G V+ + + L+E Sbjct: 102 FLTSLHAGANGFLLKDVSLDKLLNAIEVIAQGGVLIEPVVLNQLSQQAPINAPEVNPLSE 161 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RETS L+ +G +++EIA + L+ TV ++ + KL +R +A+ K + G I Sbjct: 162 RETSILKFMANGCSNKEIATGVFLAEGTVKNHVSNILSKLGCRDRTRAVLKGLELGII 219 >gi|307328222|ref|ZP_07607400.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886056|gb|EFN17064.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 232 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQ 183 G+++ +E L N V A G + L + S LTERET L Sbjct: 100 AGAIGFLLKNAEADDLRNAVKAAAVGQIHVSPAAISRLMGQVREPSGPEQLTERETEVLT 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G ++EIA L + TV Y+ KL +R QA A++ G + Sbjct: 160 MLARGKANKEIAHDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLV 210 >gi|16080361|ref|NP_391188.1| two-component response regulator YvqE responding to cell wall stress [Bacillus subtilis subsp. subtilis str. 168] gi|221311254|ref|ZP_03593101.1| hypothetical protein Bsubs1_17956 [Bacillus subtilis subsp. subtilis str. 168] gi|221315581|ref|ZP_03597386.1| hypothetical protein BsubsN3_17872 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320496|ref|ZP_03601790.1| hypothetical protein BsubsJ_17835 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324780|ref|ZP_03606074.1| hypothetical protein BsubsS_17986 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312856|ref|YP_004205143.1| two-component response regulator YvqE [Bacillus subtilis BSn5] gi|68051995|sp|O32197|LIAR_BACSU RecName: Full=Transcriptional regulatory protein liaR gi|2635805|emb|CAB15298.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis subsp. subtilis str. 168] gi|2832821|emb|CAA11745.1| YvqC protein [Bacillus subtilis] gi|320019130|gb|ADV94116.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis BSn5] Length = 211 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 9/123 (7%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA 171 +PV + Y++ TS+ +A+ + + G +V++ + + Sbjct: 90 VYPV-IEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRH-SGENALPH 147 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT+RE L L +G T++EI E+L +++ TV ++ + KLD +R QA A R Sbjct: 148 ESLTKRELEILCLIAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRN 207 Query: 232 GYI 234 + Sbjct: 208 HLV 210 >gi|307330717|ref|ZP_07609854.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883609|gb|EFN14658.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 214 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 4/114 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERET 179 L GYV + LA + G L L + + +LTERE Sbjct: 99 LRAGAAGYVYKDVDPEALARAIRSVHSGHVLLQPEVALALLSQDEGGGQGRGGSLTERER 158 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 159 EVLALIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 212 >gi|229062451|ref|ZP_04199766.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228716840|gb|EEL68528.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 186 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL--ELFKKRSSAARNLTERE 178 L +GY++ S + + + G ++ + K S LTERE Sbjct: 68 LRAGADGYLLKDSSSDQVVAAIRMVLQGDSVIHPRMTKKLITYHQQTKSESNENELTERE 127 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 128 KEILFELAKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVRNQLV 183 >gi|323490881|ref|ZP_08096077.1| two-component response regulator [Planococcus donghaensis MPA1U2] gi|323395449|gb|EGA88299.1| two-component response regulator [Planococcus donghaensis MPA1U2] Length = 198 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA + G EL + LT+RE ++L Sbjct: 94 AGVSGYLLKDSPSEDLATSIRTIMSGRRIYA----PELVDLAYADENPLTDREKQVMELI 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G +++EIA++L ++ TV Y+ + KL+ NRI+AI++ G+ Sbjct: 150 AEGRSTKEIAKELFITTGTVRNYISTILDKLEVSNRIEAISRFKEKGW 197 >gi|253732505|ref|ZP_04866670.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253723786|gb|EES92515.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 207 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + +G + D E ++ L++RE L+ Sbjct: 98 GADGYEMKDIEPQQLIETIRRVMNGEKMIHPKAQDVFETVSQKPHYTNKLSKREIEVLRE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIAE L +S T+ ++ KL +R QA A+ I Sbjct: 158 MVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207 >gi|170727337|ref|YP_001761363.1| LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169812684|gb|ACA87268.1| transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 250 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 41/221 (18%), Positives = 69/221 (31%), Gaps = 15/221 (6%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-------D 74 +QN ++ AL + P I + + Y D Sbjct: 37 KALQNLLEVDGVALINLIL---RPDHTITIERVVSSGFGFESKSVEWDNIYQKKKFQYID 93 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + S W S+ + + + G + G + Sbjct: 94 PVVSCSASFRRSFNWASVPSMITLSEVQFNFLERAQEMGLKEGASI----GSFSTRQIYK 149 Query: 135 TSEFLMLANEVIIEAHGACYQVITDF-LELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + + A ++I + K+ A LT RE+ L + +G +S E Sbjct: 150 ELTITSVCGCSLNPEQLASLELINAVSAQAMKRLILPAEKLTGRESEILAWSSEGKSSWE 209 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I ++ TV +L + KL+ NR QAI AIR G I Sbjct: 210 IGMICSITERTVKFHLKNIYKKLNVQNRAQAIVCAIRLGLI 250 >gi|85058263|ref|YP_453965.1| transcriptional activator protein [Sodalis glossinidius str. 'morsitans'] gi|84778783|dbj|BAE73560.1| transcriptional activator protein [Sodalis glossinidius str. 'morsitans'] Length = 245 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 42/219 (19%), Positives = 74/219 (33%), Gaps = 30/219 (13%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-------DDFLFHFNSGLL 85 FA + N + D + + P +E Y D L + ++ Sbjct: 36 FAYFIFNKSQD------------EKPVIYSNYPKEWVEKYMKNKLYKQDPVLLVASQKIM 83 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF--TSEFLML-- 141 WQ + + G FP+ + + S+ L Sbjct: 84 SFPWQKNYFKKTKHQKSNI-FAQSSEYNITRGYTFPLHDHENNLAMLSLYTESDPDQLMK 142 Query: 142 -ANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGDGYTSEEIA 195 ++ + + FL ++++ + + LT RE L A G T EIA Sbjct: 143 CISDHEDRLYLLFLSIHNRFLAEKAQQTNTSNTKIEKRLTSREIEALHWASIGKTYREIA 202 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G++ TV ++G+ VKLD +N AI KA + Sbjct: 203 IIMGITESTVKFHIGNLIVKLDVINAKHAIKKATDLHLL 241 >gi|134291173|ref|YP_001114942.1| response regulator receiver protein [Burkholderia vietnamiensis G4] gi|134134362|gb|ABO58687.1| transcriptional regulator, LuxR family [Burkholderia vietnamiensis G4] Length = 260 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 73/243 (30%), Gaps = 15/243 (6%) Query: 4 NTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGD 63 N + + L I + + A+ + R L C + Sbjct: 20 NATLATRMVKILSLFTDAKDISSLSDSLGDAVLPLGFPCYAVTRIALTCYRSRPSISMEA 79 Query: 64 ----IPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112 PN ++ Y D + P W I T + + + + Sbjct: 80 ICTHYPNNWVQHYLQHNYGAVDPVHRAAFTSSGPYRWADI---TDLSQNERHVLAEACDA 136 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT-DFLELFKKRSSAA 171 G++ P+R + + + + + + L + Sbjct: 137 GLKNGLSIPIREIGGSILLINLSGPSSRINTGTKRQLASVISNLFRLELDRLAPPHPNEF 196 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ R+ CL G TS +I L +S HTV ++ A L+ +RI A A + Sbjct: 197 IQLSPRQRQCLSWVAQGKTSSDICMILKISRHTVEYHITEAMRVLNVNSRIAAAVIASNY 256 Query: 232 GYI 234 G + Sbjct: 257 GLL 259 >gi|308175685|ref|YP_003922390.1| two-component response regulator DesR [Bacillus amyloliquefaciens DSM 7] gi|307608549|emb|CBI44920.1| two-component response regulator DesR [Bacillus amyloliquefaciens DSM 7] gi|328555666|gb|AEB26158.1| two-component response regulator DesR [Bacillus amyloliquefaciens TA208] gi|328914044|gb|AEB65640.1| two-component response regulator DesR [Bacillus amyloliquefaciens LL3] Length = 199 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 4/110 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ S L + + G EL + LTERE + L+ Sbjct: 92 LKAGVSGYMLKDSPSEELVSAIRSVMKGRRVYA----PELMEDIYGEENPLTEREKAVLE 147 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L DG ++EIA L + TV Y+ KL+ NRI+AI ++ G+ Sbjct: 148 LVADGKNTKEIANALSIKSGTVRNYVSMILDKLEVKNRIEAITRSKEKGW 197 >gi|148658406|ref|YP_001278611.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148570516|gb|ABQ92661.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 246 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 2/94 (2%) Query: 143 NEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 N++++ + QV+ F ++ ++ + L+ RE L+L G+T++ IA+ L + Sbjct: 143 NDLVLSSPDVAAQVLNAFRQMAVDEETQNVYSPLSPRELQVLELVAAGHTNKAIAQSLDI 202 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV ++ S KL +R QA+ A+R G+I Sbjct: 203 SNQTVKNHISSILRKLAVNDRTQAVVYAMRRGWI 236 >gi|297160220|gb|ADI09932.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 213 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSC 181 GY++ + L V A G V++ + + + L+ RE Sbjct: 100 AGATGYLLKDAPRDELFTAVRAAAEGRTVLSPAVVSRLVGAVRNPATPTVEVLSAREREV 159 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ EIA +L +S TV +L KL +R A+A A G + Sbjct: 160 LELVAKGTSNREIARELFISEATVKTHLTHLYRKLGVKDRAAAVAVAYDRGIL 212 >gi|218247412|ref|YP_002372783.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061251|ref|YP_003139139.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167890|gb|ACK66627.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256591417|gb|ACV02304.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 210 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN----LTE 176 L + Y I + L + GA Y Q+ L+ K + L+E Sbjct: 93 LSSGADAYCIKGASLERLLAAIEAAKDGATYLDPQIARLVLDNLKPPTPEPNQNLALLSE 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G ++ EIAE L LS +T+ ++ KL +R+QA A+R G + Sbjct: 153 RELEVLKLIVEGKSNNEIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 210 >gi|323489235|ref|ZP_08094467.1| NarL family DNA-binding response regulator [Planococcus donghaensis MPA1U2] gi|323397122|gb|EGA89936.1| NarL family DNA-binding response regulator [Planococcus donghaensis MPA1U2] Length = 211 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 8/166 (4%) Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D L ++PI+ + + +IE + + + L + P L Y+ Sbjct: 48 PDLILMDM---VMPIMNGAEATKAIIEQWPEAKIMIVTSFLDDDKVY-PA-LQAGAVSYI 102 Query: 133 IFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 + TS+ +A+ + +G +V+T ++ + +LTERE L L G Sbjct: 103 LKTSKASRIADSIRETMNGTPVLEPEVMTKMMKQMRHERVLHDDLTEREMEILLLLARGL 162 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 T++E+A++L ++V TV ++ + KL+ +R QA+ A + I Sbjct: 163 TNQEVADQLFIAVKTVKTHVSNILAKLEVHDRTQAVIYAFQHKLIT 208 >gi|256783882|ref|ZP_05522313.1| two-component regulator [Streptomyces lividans TK24] gi|289767766|ref|ZP_06527144.1| two-component system response regulator [Streptomyces lividans TK24] gi|289697965|gb|EFD65394.1| two-component system response regulator [Streptomyces lividans TK24] Length = 222 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 13/123 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA------R 172 +G+++ L + V + A G +++ D + ++ ++A Sbjct: 96 AGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPAVTRRLVADIVRRRREEAAADVTPQRLE 155 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ EIA L +S HTV ++ + KL +R+QA+ A G Sbjct: 156 ALTAREVETLRLLARGLSNSEIATTLFVSEHTVKTHVSNVLGKLGLRDRVQAVICAYETG 215 Query: 233 YIC 235 + Sbjct: 216 LVA 218 >gi|302518272|ref|ZP_07270614.1| two component response regulator [Streptomyces sp. SPB78] gi|318062320|ref|ZP_07981041.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318079406|ref|ZP_07986738.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|333028052|ref|ZP_08456116.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|302427167|gb|EFK98982.1| two component response regulator [Streptomyces sp. SPB78] gi|332747904|gb|EGJ78345.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 226 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR--NLTERE 178 L GYV + LA + G +V L ++ R +LTERE Sbjct: 110 LRAGAAGYVYKDIDPEALAGAIRSVHAGHVLLQPEVAGMLLAQEEQAPQQPRGGSLTERE 169 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R GY Sbjct: 170 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGY 224 >gi|159900171|ref|YP_001546418.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893210|gb|ABX06290.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 221 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF---KKRSSAARNLTERET 179 Y++ L LA V G +V ++ F + A LTERE Sbjct: 98 AGAISYLLKDVSPLELARAVRSAKRGEAVLHPEVAAKLMQEFSAPRNNDPDAEALTEREM 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G+++ EIA+ L +S TV ++ + KL +R QA A+R + Sbjct: 158 DVLRLIARGHSNREIADSLIISEKTVKTHVSNILSKLHLADRTQAAIYALRQRLV 212 >gi|21224963|ref|NP_630742.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|3334798|emb|CAA19946.1| putative two-component regulator [Streptomyces coelicolor A3(2)] Length = 222 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 13/123 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN----- 173 +G+++ L + V + A G +++ D + ++ ++A Sbjct: 96 AGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPAVTRRLVADIVRRRREEAAADVTPQRLE 155 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ EIA L +S HTV ++ + KL +R+QA+ A G Sbjct: 156 VLTAREVETLRLLARGLSNSEIATTLFVSEHTVKTHVSNVLGKLGLRDRVQAVICAYETG 215 Query: 233 YIC 235 + Sbjct: 216 LVA 218 >gi|328945025|gb|EGG39181.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] Length = 210 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L +GY++ TS + V A G A ++ +E + +LT RE Sbjct: 91 PV-LDAGAHGYMLKTSSAEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTARE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 150 RDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205 >gi|125718640|ref|YP_001035773.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|323350296|ref|ZP_08085961.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|125498557|gb|ABN45223.1| Two-component response transcriptional regulator (CheY-like receiver and HTH DNA-binding domains), putative [Streptococcus sanguinis SK36] gi|322123481|gb|EFX95152.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|324991776|gb|EGC23708.1| DNA-binding response regulator [Streptococcus sanguinis SK353] gi|325697714|gb|EGD39599.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|327467206|gb|EGF12710.1| DNA-binding response regulator [Streptococcus sanguinis SK330] Length = 210 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L +GY++ TS + V A G A ++ +E + +LT RE Sbjct: 91 PV-LDAGAHGYMLKTSSAEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTARE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 150 RDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205 >gi|308067163|ref|YP_003868768.1| DegU family transcriptional regulator [Paenibacillus polymyxa E681] gi|305856442|gb|ADM68230.1| Transcriptional regulatory protein degU (Protease production enhancer protein) [Paenibacillus polymyxa E681] Length = 217 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKR--SSAARNLTE 176 +GY++ ++ L + A G+ Y ++++++L+ K+ + +L+E Sbjct: 97 AGASGYILKSAPHEELLAAIQSVAEGSAYLYPNATKRLMSEYLDKIKQEGIAGPYESLSE 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L GY ++EIAE L +SV TV ++ + KL R + + A++ G + Sbjct: 157 REKEILSWVAKGYANKEIAEHLVISVKTVESHKSNLMEKLSLKTRPELVKFALKKGLL 214 >gi|300088236|ref|YP_003758758.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527969|gb|ADJ26437.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 232 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK--RSSAARNL 174 L +GY++ ++ + + G A +++ + L K+ L Sbjct: 96 LEAGASGYLLKSARADEIVGAIRAVRAGESVLDSMATRKLLERVVNLSKEVPDEKGRGQL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE L+LA G ++ +IAEKL LS+ TV A+L + K+ +R +AI K R GY+ Sbjct: 156 SPREIEILRLAARGLSNRDIAEKLELSMRTVKAHLSNIFNKMRCSSRTEAIVKGFREGYV 215 Query: 235 C 235 Sbjct: 216 T 216 >gi|209552217|ref|YP_002284132.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539329|gb|ACI59261.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 258 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 40/173 (23%), Positives = 62/173 (35%), Gaps = 12/173 (6%) Query: 74 DDFLFHFNSGLLPIIWQ-SIQEETVIESSGQLSVRLEGGLL----PFAGIAFPVRLGFHK 128 D P W +T+I L G+ PV + Sbjct: 80 DPVQQVALRSTAPFFWNYDTDADTLINRFMSDDTAPVARYLNERDMSTGVTVPVHMPGGD 139 Query: 129 NGYVI---FTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRSSAARNLTERETSC 181 V F + + A + L K S LTERE C Sbjct: 140 YATVTGIRFGGNSEFERHALRYIADFNLLAHVFHETAYSLFDKKALSVGTVRLTEREREC 199 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ + +G++++EI+ +G SV TV +L +A KL A NR QA+ +A + + Sbjct: 200 LRHSAEGFSAKEISRIIGRSVPTVVMHLNAAAKKLGARNRTQAVVRATHYRLL 252 >gi|139473330|ref|YP_001128045.1| response regulator protein [Streptococcus pyogenes str. Manfredo] gi|134271576|emb|CAM29801.1| response regulator protein [Streptococcus pyogenes str. Manfredo] Length = 213 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV GY++ TS + N + G A + ++ + LT RE Sbjct: 94 PVIDA-GAKGYMLKTSSAAEILNAIRKVLKGELAIETEVDKKIKAHDQHPDLHEELTARE 152 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 153 YDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 208 >gi|269925915|ref|YP_003322538.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789575|gb|ACZ41716.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 226 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 15/124 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------------ACYQVITDFLEL--FKKRSSA 170 YV + L + + G +V+ F +L + + Sbjct: 97 AGAAAYVTKDTSPDRLVDIIRRVGKGEYIINENLITKPFVASRVLKQFRDLAALEDEENL 156 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G +++EIA ++ +S TV ++ S KL +R QA+ A++ Sbjct: 157 FTPLTSREVEILDCIARGMSNKEIARQMSISDQTVKNHITSILRKLAVNDRTQAVIYALK 216 Query: 231 FGYI 234 G+I Sbjct: 217 RGWI 220 >gi|304405086|ref|ZP_07386746.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345965|gb|EFM11799.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 227 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 Y++ TS +A+ + A G +++ F + + + A LTERE Sbjct: 110 AGAFSYLLKTSRANEIADAIRAAARGQSVLESQVAAKMMNRFRQPQQTTAKAHEQLTERE 169 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G +++EIA+ L + + TV ++ + KL +R QA A + G Sbjct: 170 MDVLKLVAQGKSNQEIADDLFIGIKTVKFHVTNIFSKLGVDDRTQAAIYAHKQGL 224 >gi|320335412|ref|YP_004172123.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319756701|gb|ADV68458.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 213 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 4/113 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA-RNLTERET 179 L +++ + LA + + A G + V +L L +R LT RE Sbjct: 97 LRAGAAAFLLKDVDADELARVIRLVARGERFIQPTVAAKYLRLLAQRPQEPQEPLTPREH 156 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L G +++ IA +LG+S TV ++ S KL NR +A +A G Sbjct: 157 EVLALIARGDSNKRIAAQLGISDSTVKNHISSVLAKLQVRNRTEAALRARTLG 209 >gi|315304744|ref|ZP_07874927.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL F6-596] gi|313626888|gb|EFR95838.1| transcriptional regulatory protein DegU [Listeria ivanovii FSL F6-596] Length = 228 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS------- 169 L GY++ + L V I +G Y ++I ++ L ++ Sbjct: 95 LRSGAVGYLLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNAAQGVYGYQ 154 Query: 170 ------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQL DG ++ I E L +S TV ++ S K+ +R Q Sbjct: 155 QPEVKMPLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQ 214 Query: 224 AIAKAIRFGYI 234 A+ AI+ G++ Sbjct: 215 AVVTAIKHGWV 225 >gi|271961694|ref|YP_003335890.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504869|gb|ACZ83147.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 204 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 7/126 (5%) Query: 113 LPFAGIAFPVRL----GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 L G P L G H G+++ T+ L V A G + + D Sbjct: 82 LVLTGQGRPGHLRRAQGAHVTGFLLKTAPVDELITAVRAVAAG---RRVLDPNLAVTAWD 138 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE+ L+L +G + EIA +L LS TV +L + KL+A +R A+ A Sbjct: 139 LGDNPLTPRESDVLRLTAEGAEATEIAARLFLSAGTVRNHLTAIVSKLNARSRTDAVRIA 198 Query: 229 IRFGYI 234 G+I Sbjct: 199 GDAGWI 204 >gi|297195179|ref|ZP_06912577.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197722161|gb|EDY66069.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 214 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR--NLTERE 178 L +GYV + LA + G ++ L + R +LTERE Sbjct: 98 LRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQQEIAGALLSDGDPGNGTGRGNSLTERE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 158 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHGM 212 >gi|78047743|ref|YP_363918.1| two-component system LuxR family regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036173|emb|CAJ23864.1| two-component system regulatory protein, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 213 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ ++ L + + G V E L+ RET L Sbjct: 100 LQAGACGYLLKSALRRELVDTIRDVRRGQRRHVPASVAENIAAH-VLDDALSARETEVLN 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G ++++I L +S TV A++ + KL +R A+ A+R G + Sbjct: 159 LVATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALRRGILS 210 >gi|22536505|ref|NP_687356.1| DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|76788056|ref|YP_329044.1| LuxR family transcriptional regulator [Streptococcus agalactiae A909] gi|76797803|ref|ZP_00780068.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21] gi|77405005|ref|ZP_00782106.1| DNA-binding response regulator [Streptococcus agalactiae H36B] gi|77410572|ref|ZP_00786932.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|22533337|gb|AAM99228.1|AE014206_8 DNA-binding response regulator [Streptococcus agalactiae 2603V/R] gi|76563113|gb|ABA45697.1| DNA-binding response regulator, LuxR family [Streptococcus agalactiae A909] gi|76586817|gb|EAO63310.1| DNA-binding response regulator [Streptococcus agalactiae 18RS21] gi|77163287|gb|EAO74238.1| DNA-binding response regulator [Streptococcus agalactiae CJB111] gi|77176444|gb|EAO79212.1| DNA-binding response regulator [Streptococcus agalactiae H36B] Length = 213 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + + G A + ++ K + LT RE L Sbjct: 98 AGAKGYMLKTSSAAEILNAIRKVSRGEQAIENEVDKKIKAHDKCPALHEGLTARERDILN 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 158 LLAKGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHHLV 208 >gi|294811306|ref|ZP_06769949.1| LuxR response regulator receiver [Streptomyces clavuligerus ATCC 27064] gi|294323905|gb|EFG05548.1| LuxR response regulator receiver [Streptomyces clavuligerus ATCC 27064] Length = 231 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ + LA+ V + G +VI L L + LT RE L+ Sbjct: 123 LAARVGGFLLKEAPPARLADAVREVSAGK--RVIDPQLALAAF-DNGENPLTPREVEVLR 179 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A DG + EIA +L LSV TV YL + KL+A NR+ AI A G++ Sbjct: 180 MAADGAEAAEIAVRLFLSVGTVRNYLTTIVTKLNARNRVDAIRVARESGWL 230 >gi|290962363|ref|YP_003493545.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22] gi|260651889|emb|CBG75019.1| nitrate/nitrite response regulator [Streptomyces scabiei 87.22] Length = 234 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L G+++ + L V + G + +E F ++ + A Sbjct: 97 LSAGAAGFLLKDTTPEHLVAAVRLVRSGDALLAPAITRRLVERFARQDAPATPRHRDLAA 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G + E+A+ LGLS TV ++ KL +R+QA+ A R G Sbjct: 157 LTPRERDVLRLLAGGLNNAELADHLGLSEATVKTHVARILAKLGLRDRVQAVIVAYRTGL 216 Query: 234 IC 235 + Sbjct: 217 VS 218 >gi|290581010|ref|YP_003485402.1| putative response regulator [Streptococcus mutans NN2025] gi|254997909|dbj|BAH88510.1| putative response regulator [Streptococcus mutans NN2025] Length = 213 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + A G A + ++ +LT RE L Sbjct: 98 AGAKGYMLKTSSAAEILNAIQKVAKGDLAIETEVDKKIKDHHNNPDLHEDLTARERDILA 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++ IA++L +S+ TV ++ + KL +R QA+ A + + Sbjct: 158 LLAKGYDNQTIADELFISLKTVKTHVSNILSKLQVDDRTQAVVYAFQHHLV 208 >gi|332358064|gb|EGJ35897.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] Length = 210 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L +GY++ TS + V A G A ++ +E + +LT RE Sbjct: 91 PV-LDAGAHGYMLKTSSAEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTARE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 150 RDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205 >gi|296331212|ref|ZP_06873685.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675910|ref|YP_003867582.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296151663|gb|EFG92539.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414154|gb|ADM39273.1| two-component response regulator [liaS] responding to cell wall stress [Bacillus subtilis subsp. spizizenii str. W23] Length = 211 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 9/123 (7%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA 171 +PV + Y++ TS+ +A+ + + G +V++ + + Sbjct: 90 VYPV-IEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRH-SGEHALPH 147 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT+RE L L +G T++EI E+L +++ TV ++ + KLD +R QA A R Sbjct: 148 ESLTKRELEILCLIAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRN 207 Query: 232 GYI 234 + Sbjct: 208 HLV 210 >gi|84495164|ref|ZP_00994283.1| putative two-component system response regulator [Janibacter sp. HTCC2649] gi|84384657|gb|EAQ00537.1| putative two-component system response regulator [Janibacter sp. HTCC2649] Length = 219 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFK---KRSSAARN 173 L +G+++ + LA V + A G ++I + + K S R Sbjct: 96 LRIGASGFMLKDAPSEELARAVRVVAAGDSLLAPSVTKRLIAEVTKSRSGVPKDSPRLRE 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIA +L ++ TV ++ KL +R QA+ A G Sbjct: 156 LTPRELEVLELIARGLSNVEIATRLFVAEQTVKTHVSRVLAKLGLRDRAQAVVFAYEHGV 215 Query: 234 I 234 + Sbjct: 216 V 216 >gi|207722200|ref|YP_002252637.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2] gi|206587375|emb|CAQ17958.1| hypothetical solr-related protein [Ralstonia solanacearum MolK2] Length = 459 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 70/188 (37%), Gaps = 20/188 (10%) Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 P ++ Y D + S I+W E++ S + GL Sbjct: 278 FDTYPAGWMQHYQANGFLDIDPTVRAGASSGDMIVW---PVSIRDEAARLWSDARDAGLN 334 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKK 166 G+A G + L + A + +++ FL Sbjct: 335 V--GVARSSWTAHGAFGLLTLARHADPLTAAELGRLSIATHWLANLAHTLMSPFLVPKLV 392 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S A LT RE L G+G T+ EI + L +S TVN ++ + +KL A N++QA+ Sbjct: 393 PESNAV-LTAREREVLCWTGEGKTAYEIGQILRISERTVNFHVNNVLLKLAATNKVQAVV 451 Query: 227 KAIRFGYI 234 KAI G I Sbjct: 452 KAIATGLI 459 >gi|158312391|ref|YP_001504899.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158107796|gb|ABW09993.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 219 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR-------N 173 L +G+++ + L + + + A G V L +R R Sbjct: 92 LAAGADGFLLKRATPEQLIDGIRVVAGGDALVAPAVTRRLLVTLARRRVPDRELLTRADQ 151 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ +G ++ EIA L LSV TV ++ KL +R QA+ A R G+ Sbjct: 152 LTDREAEVLRALAEGRSNTEIAAVLNLSVETVRTHVKRILSKLGVRDRTQAVVWAYRAGF 211 Query: 234 I 234 + Sbjct: 212 V 212 >gi|67922881|ref|ZP_00516379.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] gi|67855305|gb|EAM50566.1| regulatory protein, LuxR:Response regulator receiver [Crocosphaera watsonii WH 8501] Length = 221 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN----LTE 176 L + Y I + L + GA Y Q+ L+ K +S L+E Sbjct: 104 LSSGADAYCIKGASLERLLAAIEAAQDGATYLDPQIARLVLDNLKPPTSEPNQNISLLSE 163 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G ++ +IAE L LS +T+ ++ KL +R+QA A+R G + Sbjct: 164 RELEVLKLIVEGKSNNQIAEDLYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 221 >gi|213970237|ref|ZP_03398368.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Pseudomonas syringae pv. tomato T1] gi|213925118|gb|EEB58682.1| transcriptional activator of quorum sensing autoinducer synthesis transcription regulator protein [Pseudomonas syringae pv. tomato T1] Length = 185 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 61/186 (32%), Gaps = 11/186 (5%) Query: 55 HNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSV------RL 108 +NYD + I D L H P++W + G++ L Sbjct: 5 NNYDPQWNENYQIHNFVESDPTLQHGFKSNEPMLWSEDTFKDHTLLYGEMKKFNLNYGWL 64 Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 + A V L + + ++ AC I Sbjct: 65 QSSWYNSAAKGV-VTLSRSTEAITLKELDAKEAKMSKLVRLTHACLSEIITL----SPPY 119 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + L+ RE L+ DG T E I + LG++ TV + + KL+A N+ A KA Sbjct: 120 NPLEKLSTREVEVLKWVADGKTGEVIGKVLGVTERTVTHHTVNIMQKLNATNKTAAAVKA 179 Query: 229 IRFGYI 234 G I Sbjct: 180 ALLGII 185 >gi|24378972|ref|NP_720927.1| putative response regulator [Streptococcus mutans UA159] gi|24376861|gb|AAN58233.1|AE014894_10 putative response regulator [Streptococcus mutans UA159] Length = 215 Score = 105 bits (262), Expect = 5e-21, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + A G A + ++ +LT RE L Sbjct: 100 AGAKGYMLKTSSAAEILNAIQKVAKGDLAIETEVDKKIKDHHNNPDLHEDLTARERDILA 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++ IA++L +S+ TV ++ + KL +R QA+ A + + Sbjct: 160 LLAKGYDNQTIADELFISLKTVKTHVSNILSKLQVDDRTQAVVYAFQHHLV 210 >gi|328881486|emb|CCA54725.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 214 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 46/115 (40%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERE 178 L GYV + LA + G L + S LTERE Sbjct: 98 LRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDSHGGTGRGSTLTERE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 158 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 212 >gi|226860311|gb|ACO88865.1| transcriptional regulatory protein [Microbacterium sp. MA1] Length = 228 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L G+++ S L V + +V+ F +++ A LT+ Sbjct: 106 LRAGAAGFILKDSPAEALIWAVRAVVRDGAFLDPAVTERVLQGFRRAGREQVPVAPELTD 165 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE+ L+L G T+ EIA LG+S TV +++ KLD +R AI A G + Sbjct: 166 RESDVLRLIARGQTNTEIASTLGISSVTVKSHVNHIFTKLDLRDRAAAIVYAFDHGLVV 224 >gi|253987735|ref|YP_003039091.1| transcription regulator SdiA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211638613|emb|CAR67232.1| similar to probable transcription regulator sdia of escherichia coli [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253779185|emb|CAQ82345.1| similar to probable transcription regulator SdiA of Escherichia coli [Photorhabdus asymbiotica] Length = 242 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 45/216 (20%), Positives = 75/216 (34%), Gaps = 15/216 (6%) Query: 29 KARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLP-- 86 K F L+++ FP + + NY + D L HF P Sbjct: 32 KISGFRLFSLVLKTRFPVSGREVYFFDNYHESWRALYIEKKYWMIDPVL-HFRPVP-PTF 89 Query: 87 -IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEV 145 +W + + E G +G+ F + G + + N+ Sbjct: 90 SRVW-DLNFFAESNGKELWYMTQEHGF--RSGVTFGLPAFSGTYGIFSVAGKDGPIDNDT 146 Query: 146 IIEAHGACYQVITDFLELFKKRSS-------AARNLTERETSCLQLAGDGYTSEEIAEKL 198 + + G +V + + + + RE L+ DG S EIA + Sbjct: 147 MYKCSGEILKVYIRIIRYLISHTKYLQTFYIDEISFSHRELEVLRYTADGMISSEIASTI 206 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ TV+ +L + KL N+ QAIAKA GYI Sbjct: 207 CVTKSTVDFHLMNIVKKLGCRNKFQAIAKAALLGYI 242 >gi|167628890|ref|YP_001679389.1| transcriptional regulator, luxr family, putative [Heliobacterium modesticaldum Ice1] gi|167591630|gb|ABZ83378.1| transcriptional regulator, luxr family, putative [Heliobacterium modesticaldum Ice1] Length = 214 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN---LTERET 179 +GY++ L ++ A G ++ L + + A + LTERE Sbjct: 98 AGVDGYLLKDVSPETLYGAIVTVARGGSVLNPAIVQKVLAKRRFNRTVAHSGDELTEREK 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T+ +IA L +S TV ++ + KL +R QA AI+ + Sbjct: 158 EVLGLIAQGSTNADIASALFISEKTVKNHITNIFRKLQVKDRTQAALYAIKNRLV 212 >gi|291485797|dbj|BAI86872.1| hypothetical protein BSNT_04924 [Bacillus subtilis subsp. natto BEST195] Length = 211 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 9/123 (7%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA 171 +PV + Y++ TS+ +A+ + + G +V++ + Sbjct: 90 VYPV-IEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRH-SGENELPH 147 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT+RE L L +G T++EI E+L +++ TV ++ + KLD +R QA A R Sbjct: 148 ESLTKRELEILFLIAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRN 207 Query: 232 GYI 234 + Sbjct: 208 HLV 210 >gi|229171060|ref|ZP_04298658.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3] gi|228612390|gb|EEK69614.1| hypothetical protein bcere0006_1930 [Bacillus cereus MM3] Length = 213 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 10/119 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK-------RSSAARN 173 L +GY++ E +A ++ G + +E KK + Sbjct: 90 LEQGASGYLLKDMETDAIAQAILTVHSGGVVLPQDITAQIIEELKKTKVAVCNPPEQLKQ 149 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 150 LTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 208 >gi|16330324|ref|NP_441052.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1652813|dbj|BAA17732.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 226 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKR----SSAARNLTE 176 L + Y + + L + GA Y Q+ +E K + +L+E Sbjct: 109 LSSGADAYCVKGATLERLILAIAAAQDGATYLDPQIARVVVENLKPPVPEGQADVSSLSE 168 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G +++EIA+ L LS +T+ ++ KL +R+QA A+R G + Sbjct: 169 REIDVLKLIVEGKSNQEIAQTLYLSTNTIKTHVRGIMNKLSVDDRVQAAVIALRSGLV 226 >gi|328882240|emb|CCA55479.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 226 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELF---KKRSSAAR- 172 L +G+++ + L + V + A G ++I DF +K ++A R Sbjct: 99 LRAGASGFLLKDAPPADLISAVRVVAAGEALLAPSVTRRLIADFAASRPAPRKDTTALRL 158 Query: 173 -NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RET L+L G +++EIA+ L L+ TV ++G KLD +R QA+ A Sbjct: 159 NGLTPRETEVLELIARGLSNQEIADHLVLAEQTVKTHIGRVLAKLDLRDRAQAVVFAYES 218 Query: 232 GYIC 235 G + Sbjct: 219 GLVT 222 >gi|21222167|ref|NP_627946.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|256786745|ref|ZP_05525176.1| two component system response regulator [Streptomyces lividans TK24] gi|289770639|ref|ZP_06530017.1| two component system response regulator [Streptomyces lividans TK24] gi|10432460|emb|CAC10294.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] gi|289700838|gb|EFD68267.1| two component system response regulator [Streptomyces lividans TK24] Length = 224 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK----KRSSAAR 172 L +G+++ + L V + A G ++I DF + K + + Sbjct: 99 LRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTRRLIADFAQQRPASRGKPALRLK 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA L L+ TV ++ KLD +R QA+ A G Sbjct: 159 GLTERETEVLTLVARGQSNTEIARTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESG 218 Query: 233 YIC 235 + Sbjct: 219 LVA 221 >gi|325929180|ref|ZP_08190322.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|325540465|gb|EGD12065.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 213 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ ++ L + + G V E L+ RET L Sbjct: 100 LQAGACGYLLKSALRRELVDTIRDVRRGQRRHVPASVAENIAAH-VLDDALSARETEVLN 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G ++++I L +S TV A++ + KL +R A+ A+R G + Sbjct: 159 LVATGCSNKQIGSALSISEETVKAHMKNILGKLGVRDRTHAVTVALRRGILS 210 >gi|294628486|ref|ZP_06707046.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces sp. e14] gi|292831819|gb|EFF90168.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces sp. e14] Length = 231 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 11/120 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF--------KKRSSAAR 172 L +G+++ + L + + A G + L+ + + Sbjct: 97 LRAGASGFLLKDAPANELVQAIRVVAAGEAMLAPSITRRLLDKYATHLPSGEEPVPDTLH 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA L +S TV ++G KL +R+QA A G Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRVQAAVYAYESG 216 >gi|134097553|ref|YP_001103214.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910176|emb|CAM00289.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 210 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 4/116 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERET 179 L +G+++ + + + I A G L A LTERE Sbjct: 92 LRAGASGFLLKRTRPEEIVQAIRIAAQGESLLFPAAIRRLVARRAPAARRPAPTLTEREA 151 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+L G ++ EIA +L + + TV ++G+ KL A +R QA+ A G++ Sbjct: 152 EVLRLMAKGLSNTEIAGELFIGIQTVKTHVGNVLAKLGARDRTQAVVFAYESGFVS 207 >gi|315221997|ref|ZP_07863908.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315188963|gb|EFU22667.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 210 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L GY++ TS + V A G A ++ +E + +LT RE Sbjct: 91 PV-LDAGAKGYMLKTSSADDILRAVRKVAKGELAIETEVSQKVEYHRNHIELHEDLTARE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 150 RDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205 >gi|312196093|ref|YP_004016154.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227429|gb|ADP80284.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 220 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA---RN 173 L +G+++ + L + + + G ++I +L R + + Sbjct: 95 LQAGASGFLLKDTLATDLLSAIRVVTRGDAVVAPSVTRRLIERYLGSGPARITPPADLQT 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L G ++ EIA ++ ++ TV ++ KL+ +R+QA+ A G Sbjct: 155 LTEREREVLVLIARGLSNTEIAARIYVTEGTVKTHVSRLLAKLNLRDRVQAVVYAYESGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|269941319|emb|CBI49716.1| response regulator protein [Staphylococcus aureus subsp. aureus TW20] Length = 207 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + +G + D E ++ L++RE L+ Sbjct: 98 GADGYEMKDVEPQQLIETIRRVMNGEKMIHLKAQDVFETVSQKPHYTNKLSKREIEVLRE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIAE L +S T+ ++ KL +R QA A+ I Sbjct: 158 MVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207 >gi|158320230|ref|YP_001512737.1| two component LuxR family transcriptional regulator [Alkaliphilus oremlandii OhILAs] gi|158140429|gb|ABW18741.1| two component transcriptional regulator, LuxR family [Alkaliphilus oremlandii OhILAs] Length = 224 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 9/114 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRS------SAARNLTER 177 NGYV+ +E L + G Y + T+ ++ F +R + LT R Sbjct: 106 GANGYVLKDAESESLIKAIRDVYQGLNYIYPTLATELVKEFNRREVKSQKRNNEDELTRR 165 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L L +G ++EI + L +S TV ++ + K++ +R QA A + Sbjct: 166 EYEVLTLLAEGINNKEIGDCLFISEKTVKNHVSNIFKKINVNDRTQAAIYAYKH 219 >gi|89053644|ref|YP_509095.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1] gi|88863193|gb|ABD54070.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1] Length = 243 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 42/183 (22%), Positives = 62/183 (33%), Gaps = 10/183 (5%) Query: 61 SGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + P I Y D P W IQ+ + + Sbjct: 52 ADGFPEEWICEYLNRKLALIDPIPALAARMSRPFYWHEIQDLIPPSAQTDAYLDRLRASG 111 Query: 114 PFAGIAFPVRLGFHKNGY--VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 G+AF V +N Y + F + L E I EL + A Sbjct: 112 LGDGLAFYVFGPGLRNAYVGLGFGRPVVDLPPEQIFRLQCVAQAGHLRVCELSDQAPKEA 171 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L G ++ IAE L +S HTV+A++ S KLD +R A + + Sbjct: 172 -ALSPREKQVLDWIAKGKSNSVIAEILAMSPHTVDAHVRSIYRKLDVTDRTSAALRGVGS 230 Query: 232 GYI 234 G + Sbjct: 231 GVL 233 >gi|260462698|ref|ZP_05810904.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319782267|ref|YP_004141743.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259031604|gb|EEW32874.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317168155|gb|ADV11693.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 240 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 67/218 (30%), Gaps = 2/218 (0%) Query: 19 PRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF 78 P L + ++ F ++ ++ + EL+ + D Sbjct: 21 PLLDDVLLTVRNLGFEHLILSGVPLGGQKLAPMVELNGWPEGWFKRYVEAEHAAVDGVCI 80 Query: 79 HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 + L P +W + + + +G A P+ H + F S Sbjct: 81 YSAKTLKPFLWADVPAKWSDTKGSRRVAGEATEFGISSGFAVPMLSVHHWQSVLSFASSA 140 Query: 139 LMLANEVIIEAHGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 + A E V L LTERE L A G TS E ++ Sbjct: 141 KVCALSPREEVQLVTMAVYAGMAIQALSHGDEVEEGLLTEREKEVLLWAAAGKTSSETSQ 200 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LGL+ TV + A QAI +A+R I Sbjct: 201 ILGLAERTVKWHATRAREAFGVATTTQAIVEAVRRRMI 238 >gi|311895893|dbj|BAJ28301.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G+++ + L V + A G ++I DF R Sbjct: 99 LRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFARNRPAPRRDPRLRLN 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L+L G +++EIA L L+ TV ++G KLD +R QA+ A G Sbjct: 159 GLTPRETEVLELIARGLSNQEIAAHLVLAEQTVKTHVGRILGKLDLRDRAQAVVLAYESG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|302552868|ref|ZP_07305210.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470486|gb|EFL33579.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 268 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G+++ L + V + A G +++ + R Sbjct: 94 LHAGASGFLLKDVRRDDLVHAVRVVAQGDSLLAPSVARRLVEQYTRPGAARPRRPDPRLD 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++ EIA +L +S HTV ++G+ KL +RIQA+ A G Sbjct: 154 VLTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETG 213 Query: 233 YIC 235 + Sbjct: 214 LVA 216 >gi|297159285|gb|ADI08997.1| two component LuxR family transcriptional regulator [Streptomyces bingchenggensis BCW-1] Length = 228 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQ 183 G+++ +E L + V A G L + S LTERE L Sbjct: 97 AGAIGFLLKNAEADELRSAVKGAAAGRIQVSPDATSRLMGQVRAPSGPEQLTEREAEVLT 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G +++EIA L + TV Y+ KL +R QA A++ G + Sbjct: 157 MLARGKSNKEIARDLRIGQQTVKTYVSHILTKLGVHSRTQAAVYAVQSGLV 207 >gi|239933765|ref|ZP_04690718.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 212 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL----ELFKKRSSAAR 172 L +G+++ + L V + A G ++I DF + K + + Sbjct: 87 LRAGASGFLLKNAPPADLIAAVRVVASGDALLAPSVTRRLIADFAKQRPAVRGKPALRLK 146 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA+ L L+ TV ++ KLD +R QA+ A G Sbjct: 147 GLTERETEVLTLVARGQSNGEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESG 206 Query: 233 YIC 235 + Sbjct: 207 LVA 209 >gi|291302402|ref|YP_003513680.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571622|gb|ADD44587.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA--ARNL 174 L +G+++ +E + L V + A G +++ +F + K+ SA L Sbjct: 99 LRSGASGFLVKDTEPVELLQAVRVVARGDALLSPGVTRRLVAEFAQRAKEPVSAKKLEQL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE + LAG G ++EEI KL LS T ++ A +KL A +R Q + A G + Sbjct: 159 TEREREVVALAGTGLSNEEIGAKLFLSPATAKTHISRAMIKLGARDRAQLVVFAYESGLV 218 >gi|107101332|ref|ZP_01365250.1| hypothetical protein PaerPA_01002366 [Pseudomonas aeruginosa PACS2] gi|296389701|ref|ZP_06879176.1| quorum-sensing control repressor [Pseudomonas aeruginosa PAb1] Length = 160 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 56/164 (34%), Gaps = 11/164 (6%) Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + H P+IW + + G + PVR + + Sbjct: 1 MRHGLLEYTPLIWNGEDFQ-----ENRFFWEEALHHGIRHGWSIPVRGKYGLISMLSLVR 55 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTERETSCLQLAGDGYT 190 +A I+E + + F + + LT RET L+ G T Sbjct: 56 SSESIAATEILEKESFLLWITSMLQATFGDLLAPRIVPESNVRLTARETEMLKWTAVGKT 115 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EI L + TV ++ +A KL++ N+ +A KA G + Sbjct: 116 YGEIGLILSIDQRTVKFHIVNAMRKLNSSNKAEATMKAYAIGLL 159 >gi|291009185|ref|ZP_06567158.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 227 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 50/116 (43%), Gaps = 4/116 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERET 179 L +G+++ + + + I A G L A LTERE Sbjct: 109 LRAGASGFLLKRTRPEEIVQAIRIAAQGESLLFPAAIRRLVARRAPAARRPAPTLTEREA 168 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+L G ++ EIA +L + + TV ++G+ KL A +R QA+ A G++ Sbjct: 169 EVLRLMAKGLSNTEIAGELFIGIQTVKTHVGNVLAKLGARDRTQAVVFAYESGFVS 224 >gi|608485|gb|AAA89073.1| VSMR [Pseudomonas aeruginosa] Length = 241 Score = 105 bits (262), Expect = 6e-21, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 72/231 (31%), Gaps = 24/231 (10%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-- 73 + +++ ++ F Y P + G P +E Y Sbjct: 23 DSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTR-------PKTEVHGTYPKAWLERYQMQ 75 Query: 74 -----DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + ++W + ++ G P+R + Sbjct: 76 NYGAVDPAILNGLRSSEMVVWSD-----RLFDQSRMLWNEARDWGLCVGATLPIRAPNNL 130 Query: 129 NGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQ 183 + + +++ E+ + + +L S L+ RE LQ Sbjct: 131 LSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQ 190 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +S EIA L +S TVN + + K DA N+ A A A G I Sbjct: 191 WTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKTLAAAYAAALGLI 241 >gi|28895408|ref|NP_801758.1| two-component response regulator [Streptococcus pyogenes SSI-1] gi|50914724|ref|YP_060696.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS10394] gi|71904035|ref|YP_280838.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|94988957|ref|YP_597058.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94990957|ref|YP_599057.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS10270] gi|94992850|ref|YP_600949.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS2096] gi|94994837|ref|YP_602935.1| two-component response regulator yvqC [Streptococcus pyogenes MGAS10750] gi|28810654|dbj|BAC63591.1| putative two-component response regulator [Streptococcus pyogenes SSI-1] gi|50903798|gb|AAT87513.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS10394] gi|71803130|gb|AAX72483.1| two-component response regulator [Streptococcus pyogenes MGAS6180] gi|94542465|gb|ABF32514.1| two-component response regulator [Streptococcus pyogenes MGAS9429] gi|94544465|gb|ABF34513.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS10270] gi|94546358|gb|ABF36405.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS2096] gi|94548345|gb|ABF38391.1| Two-component response regulator yvqC [Streptococcus pyogenes MGAS10750] Length = 215 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV GY++ TS + N + + G A + ++ + LT RE Sbjct: 96 PVIDA-GAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTARE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 155 YDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 210 >gi|239980581|ref|ZP_04703105.1| two-component system response regulator [Streptomyces albus J1074] gi|291452439|ref|ZP_06591829.1| two-component system response regulator [Streptomyces albus J1074] gi|291355388|gb|EFE82290.1| two-component system response regulator [Streptomyces albus J1074] Length = 228 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G+++ + LA V + A G ++IT+F L ++ + Sbjct: 99 LRAGASGFLLKDASARQLAEGVRVVASGDALLAPGVTRRLITEFSRLAERPQAPGPGQYG 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L G ++ EIA++L ++ TV ++ VKL +R QA A G Sbjct: 159 ELTERETEVLVQIAQGLSNAEIADRLFVAESTVKTHVSRILVKLSLRDRTQAAVFAYEAG 218 Query: 233 YIC 235 + Sbjct: 219 LVT 221 >gi|229165197|ref|ZP_04292990.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621] gi|228618295|gb|EEK75327.1| hypothetical protein bcere0007_1920 [Bacillus cereus AH621] Length = 214 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 11/120 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK--------RSSAAR 172 L +GY++ E +A ++ G + +E KK + Sbjct: 90 LEQGASGYLLKDMETDAIAQAILTVHSGGVVLPQDITAQIIEELKKTKVAVECNPPEQLK 149 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 150 QLTEREVDVLRAIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 >gi|149184297|ref|ZP_01862615.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148831617|gb|EDL50050.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 211 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 67/209 (32%), Gaps = 1/209 (0%) Query: 27 RIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLP 86 R A F+ + ++ + +D D+ + D Sbjct: 3 RFGADKFSYHFT-PVFGSQVSRETQVVARGFSMDWLDLYDSADFRQCDPIPDEVMRAGHT 61 Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 I W+ + + + G P+ +++ Y F + E Sbjct: 62 ISWEEALDRAEHTPEVERFIAALREYGIANGFGVPLYGPDNRDAYAAFGFPAEVTPTEEQ 121 Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 I A + D + +L++RE L+L G + IA+ L +S TV Sbjct: 122 IVALTMVARTAHDRVCQLVTIEEGEISLSQRELEVLRLIAHGKSKPVIAQLLEISADTVG 181 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 Y+ KL +R+ A KA++ I Sbjct: 182 TYVKRLYAKLGVSDRVGATVKALKLKLIT 210 >gi|302525941|ref|ZP_07278283.1| two-component system response regulator [Streptomyces sp. AA4] gi|302434836|gb|EFL06652.1| two-component system response regulator [Streptomyces sp. AA4] Length = 214 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERET 179 L +G+++ + + + G + +RS A LTERE Sbjct: 96 LLAGASGFLLKRARPEEIVAGIRTVLAGDSLLFPAAIRGMAARRSPGAAAPLDFLTERER 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ EIA +L L + TV ++G+ KL A +R QA+ +A G++ Sbjct: 156 DVLRLMAAGLSNGEIAAELYLGLQTVKTHVGNVLSKLGARDRTQAVIRAYESGFV 210 >gi|117925383|ref|YP_866000.1| LuxR family transcriptional regulator [Magnetococcus sp. MC-1] gi|117609139|gb|ABK44594.1| two component transcriptional regulator, LuxR family [Magnetococcus sp. MC-1] Length = 206 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQ 183 GYV+ + F L + ++ A G + +V+ + + ++ L+ RE ++ Sbjct: 96 AGALGYVVKDNAFSELLDAILAVAAGKRFVSEVVAEKVNELERLDDLPVQLSPREKEVVR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L DG T++EIA LG+S TV+ + KL+ + A+R G + Sbjct: 156 LVADGQTNKEIARSLGISPKTVDTHRTRLMRKLNLHTTADVVRYAMRMGLV 206 >gi|304397142|ref|ZP_07379021.1| transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304355291|gb|EFM19659.1| transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 240 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 46/245 (18%), Positives = 84/245 (34%), Gaps = 27/245 (11%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 SE + + +L P L+Q ++ F + P + I Sbjct: 11 SEVKQQFQALMACSDLKP---LLQQFTESLGFDYFAFLIQHPVPFSRPRIH-------LH 60 Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 P + ++ Y D L ++W + +G L R Sbjct: 61 STYPKLWVKRYEKQNYYAVDPVLSLCQRPGRGLMWTE----EMFAGAGNL-WREAREYGL 115 Query: 115 FAGIAFPVRLGFHKNGYVIFTSE---FLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 +G + G + +S+ L L +E + ++ D LE F + Sbjct: 116 QSGFSCSAMAPNRALGILSISSQQPIPLKLCHEELEVKLHLLAELSLDTLERFSDDAMMV 175 Query: 172 --RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + ++RE L+ G+G T+ EI+ L +S HTVN + + + + N+ Q A Sbjct: 176 LKKEFSQRELEILKWTGEGKTAVEISLILSISEHTVNFHQKNMQKRFNVSNKTQIACYAA 235 Query: 230 RFGYI 234 G I Sbjct: 236 AIGLI 240 >gi|290961118|ref|YP_003492300.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260650644|emb|CBG73760.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 215 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 14/121 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSA-------AR 172 GY++ ++ L + V A G V+ ++ L + + A A Sbjct: 92 GATGYLLKSASTEELIDAVRRTAVGDPVFTPGLAGLVLGEYRRLASEPAPAPGADEPKAP 151 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 152 QLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERG 211 Query: 233 Y 233 Sbjct: 212 L 212 >gi|327441352|dbj|BAK17717.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 224 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 57/128 (44%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------- 173 L GY++ + + + + ++G Y +V + + F++ S Sbjct: 94 LKSGALGYMLKEMDADEIVEAIKVVSNGGSYLHPKVTKNLVAEFRRLSEHENKGNFHQTE 153 Query: 174 -------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE LQL DG ++ I E L +S TV ++ S K++ +R QA+ Sbjct: 154 IRRPFHLLTKRECEVLQLLTDGQSNRTIGETLFISEKTVKNHVSSILQKMNVNDRTQAVV 213 Query: 227 KAIRFGYI 234 AI+ G++ Sbjct: 214 TAIKNGWV 221 >gi|324991970|gb|EGC23892.1| DNA-binding response regulator [Streptococcus sanguinis SK405] Length = 210 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L +GY++ TS + V A G A ++ +E + +LT RE Sbjct: 91 PV-LDAGAHGYMLKTSSAEEILRAVKKVAKGEFAIETEVSKKVEYHRNHIELHEDLTARE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 150 RDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205 >gi|294812171|ref|ZP_06770814.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] gi|326440673|ref|ZP_08215407.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324770|gb|EFG06413.1| two-component system sensor kinase [Streptomyces clavuligerus ATCC 27064] Length = 234 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 14/121 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA-------AR 172 GY++ ++ L + V A G V+ ++ L + + A Sbjct: 105 GATGYLLKSASTEELIDAVRRTADGDAVFTPGLAGLVLGEYRRLAGEPAPTPGGPEPKAP 164 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 165 RLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERG 224 Query: 233 Y 233 Sbjct: 225 L 225 >gi|107103010|ref|ZP_01366928.1| hypothetical protein PaerPA_01004079 [Pseudomonas aeruginosa PACS2] gi|152989609|ref|YP_001347033.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7] gi|150964767|gb|ABR86792.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PA7] Length = 224 Score = 105 bits (261), Expect = 6e-21, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 72/231 (31%), Gaps = 24/231 (10%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-- 73 + +++ ++ F Y P + G P +E Y Sbjct: 6 DSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTR-------PKTEVHGTYPKAWLERYQMQ 58 Query: 74 -----DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + ++W + ++ G P+R + Sbjct: 59 NYGAVDPAILNGLRSSEMVVWSD-----SLFDQSRMLWNEARDWGLCVGATLPIRAPNNL 113 Query: 129 NGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQ 183 + + +++ E+ + + +L S L+ RE LQ Sbjct: 114 LSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQ 173 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +S EIA L +S TVN + + K DA N+ A A A G I Sbjct: 174 WTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKTLAAAYAAALGLI 224 >gi|163839607|ref|YP_001624012.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162953083|gb|ABY22598.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 219 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSA---ARN 173 L +G+++ + L + V I A G ++I +F + + ++ N Sbjct: 95 LSLGASGFLLKDALADELVSAVRIVASGEALLAPSVTKRLIENFAKSRPRSAANKTRLNN 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G G +++EIA L ++ TV ++ KLD +R+QA+ A G Sbjct: 155 LTDREREVLTLVGRGLSNQEIAAALFIAEQTVKTHVSKVLTKLDLRDRVQAVVLAYDTGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|229199533|ref|ZP_04326194.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1293] gi|228583938|gb|EEK42095.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1293] Length = 215 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K + Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|269124429|ref|YP_003297799.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309387|gb|ACY95761.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 244 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L GYV+ + L G A +I +LE ++ LT Sbjct: 125 LKAGAAGYVLKSLADRDLVQACRAAVRGEPFLYPGAISVLIRSYLEQARQGEEPETPLTP 184 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G++S EIA+ L +SV TV + + KL +R++ AIR G I Sbjct: 185 REEEILKLVAEGHSSREIADTLFISVKTVERHRANILAKLGMKDRLELTRYAIRTGLI 242 >gi|19746547|ref|NP_607683.1| two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21910902|ref|NP_665170.1| putative two-component response regulator [Streptococcus pyogenes MGAS315] gi|56808638|ref|ZP_00366364.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Streptococcus pyogenes M49 591] gi|209559762|ref|YP_002286234.1| Putative two-component response regulator [Streptococcus pyogenes NZ131] gi|306826950|ref|ZP_07460250.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] gi|19748758|gb|AAL98182.1| putative two-component response regulator [Streptococcus pyogenes MGAS8232] gi|21905108|gb|AAM79973.1| putative two-component response regulator [Streptococcus pyogenes MGAS315] gi|209540963|gb|ACI61539.1| Putative two-component response regulator [Streptococcus pyogenes NZ131] gi|304430968|gb|EFM33977.1| DNA-binding response regulator [Streptococcus pyogenes ATCC 10782] Length = 213 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV GY++ TS + N + + G A + ++ + LT RE Sbjct: 94 PVIDA-GAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTARE 152 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 153 YDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 208 >gi|311896318|dbj|BAJ28726.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 241 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 12/121 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS-----AARN 173 GY++ +A + A G +++T+F + ++RS A Sbjct: 118 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMAAKLLTEFKSMIQRRSDDRELLPAPR 177 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G + EIA++L +S +TV ++ + KL +R++A+ A+R Sbjct: 178 LTDRELEVLKLVATGMNNREIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKI 237 Query: 234 I 234 + Sbjct: 238 L 238 >gi|284034798|ref|YP_003384729.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283814091|gb|ADB35930.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 216 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 9/119 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKK--RSSAARNLTE 176 +G+++ L + V + A G ++I D + R + LT Sbjct: 95 AGASGFLLKDVRRDDLVHAVRVVAAGESLLAPSVTRRLIADLTRNRPRAGRVAELDALTS 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L L G G ++ EIA L +S HTV ++ + KL +R+QA+ A G I Sbjct: 155 REREILLLLGRGLSNAEIAAALTVSEHTVKTHVSNTLTKLGLRDRVQAVIAAYETGLIT 213 >gi|51891630|ref|YP_074321.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855319|dbj|BAD39477.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 198 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 7/114 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERETS 180 G++ E L + + H ++ + ++ R++ LT RE Sbjct: 84 GALGFLTKDIEPADLVDAIRAV-HRGEPRLHPEVMKRLMVRTAQPHQPSKRDLLTPRELD 142 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G T+ EIAE+L +S TV ++ S KL +R QA A+R G + Sbjct: 143 VLRALAHGLTNREIAERLVISETTVKTHISSILSKLQLTDRTQAALWAVREGLV 196 >gi|319939666|ref|ZP_08014025.1| response regulator [Streptococcus anginosus 1_2_62CV] gi|319811255|gb|EFW07561.1| response regulator [Streptococcus anginosus 1_2_62CV] Length = 210 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L GY++ TS + V A G A ++ +E + +LT RE Sbjct: 91 PV-LDAGAKGYMLKTSSADDILRAVRKVAKGELAIETEVSQKVEYHRNHIELHEDLTARE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 150 RDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205 >gi|302560338|ref|ZP_07312680.1| nitrate/nitrite response regulator [Streptomyces griseoflavus Tu4000] gi|302477956|gb|EFL41049.1| nitrate/nitrite response regulator [Streptomyces griseoflavus Tu4000] Length = 267 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 145 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 204 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 205 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 264 >gi|297583325|ref|YP_003699105.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141782|gb|ADH98539.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 235 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------- 173 L +GY++ + L V + +G Y +V + ++ +++ ++ N Sbjct: 102 LKTGASGYLLKEMDTEALIEAVKVVGNGGSYIHPKVTHNLIKEYRRLANETGNNGEIGFR 161 Query: 174 ----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQL DG ++ I E L +S TV ++ + K+ +R Q Sbjct: 162 EVEYRRPLHLLTRRECEVLQLMTDGKSNRSIGEALYISEKTVKNHVSNILQKMGMNDRTQ 221 Query: 224 AIAKAIRFGYI 234 A+ AI+ G++ Sbjct: 222 AVVDAIKNGWV 232 >gi|251783082|ref|YP_002997385.1| putative two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242391712|dbj|BAH82171.1| putative two-component response regulator [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 215 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV GY++ TS + N + + G A + ++ + LT RE Sbjct: 96 PVIDA-GAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTARE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 155 YDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 210 >gi|311740351|ref|ZP_07714180.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304535|gb|EFQ80609.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 223 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + V A G L + + +LT RE LQL Sbjct: 115 AGAVGYLLKDAPPHELLSAVRSTAEGDSALSPIVADRLMTRVRTPRTSLTPRELEVLQLV 174 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +I + L LS TV ++L KL +R A+A A G + Sbjct: 175 AAGASNRQIGQDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 223 >gi|298695117|gb|ADI98339.1| probable response regulator protein [Staphylococcus aureus subsp. aureus ED133] Length = 207 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + +G + D E ++ L++RE L+ Sbjct: 98 GADGYEMKDVEPQQLIETIRRVMNGEKMIHPKAQDVFETVSQKPHYTNKLSKREIEVLRE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIAE L +S T+ ++ KL +R QA A+ I Sbjct: 158 MVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207 >gi|283471119|emb|CAQ50330.1| two-component response regulator [Staphylococcus aureus subsp. aureus ST398] Length = 207 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + +G + D E ++ L++RE L+ Sbjct: 98 GADGYEMKDVEPQQLIETIRRVMNGEKMIHPKAQDVFETVSQKPHYTNKLSKREIEVLRE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIAE L +S T+ ++ KL +R QA A+ I Sbjct: 158 MVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207 >gi|240142578|ref|YP_002967091.1| hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens AM1] gi|240012525|gb|ACS43750.1| Hypothetical protein MexAM1_META2p0956 [Methylobacterium extorquens AM1] Length = 265 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 65/205 (31%), Gaps = 33/205 (16%) Query: 63 DIPNILIETY-------GDDFLFHFNSGLLPIIWQS--IQEETVIESSGQLSVRLEGGLL 113 + ETY D + P W + E+ ++++ + Sbjct: 59 TVAPAWQETYARENLAAHDPCVRRVAESNSPFFWSDIVLPEDDRRPDLTRMTMTAARDMG 118 Query: 114 PFAGIAFPVRLG-FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS---- 168 + G+ P+ + + + S F +E + G + L + Sbjct: 119 YYDGLVMPLHMADANGVRMLSSLSLFWADGSEDVRRVIGPRGPAVVKMLAAAWAQKLSDL 178 Query: 169 -------------------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 LT RE L A G T++E + L L TV+ +L Sbjct: 179 GEAEAKPVQSPAKVLTGLFGRPPKLTSREVDVLSWAAKGKTADETSVILALGRETVHTHL 238 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 +A KL A N+ A+A A+ I Sbjct: 239 SNACRKLQASNKTHAVAMAVHRRLI 263 >gi|269929142|ref|YP_003321463.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269788499|gb|ACZ40641.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 212 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTERE 178 +GY++ + + V + G +++ +L + LT RE Sbjct: 96 AGASGYLLKGAPREDIFRAVRVVYRGGSLLEPVVAGKLLNRMGDLL-RGEPVEEELTARE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++EIA +L ++ TV + + KLD R +A++KAI+ G + Sbjct: 155 LDVLTLMARGLRNKEIAYELSITERTVKFHANAIYRKLDVSGRTEAVSKAIQRGLV 210 >gi|82751502|ref|YP_417243.1| two-component response regulator protein [Staphylococcus aureus RF122] gi|82657033|emb|CAI81470.1| probable two-component response regulator protein [Staphylococcus aureus RF122] Length = 207 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + +G + D E ++ L++RE L+ Sbjct: 98 GADGYEMKDVEPQQLIETIRRVMNGEKMIHPKAQDVFETVSQKPHYTNKLSKREIEVLRE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIAE L +S T+ ++ KL +R QA A+ I Sbjct: 158 MVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207 >gi|21283518|ref|NP_646606.1| hypothetical protein MW1789 [Staphylococcus aureus subsp. aureus MW2] gi|49484090|ref|YP_041314.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49486665|ref|YP_043886.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57650637|ref|YP_186730.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus COL] gi|87161726|ref|YP_494481.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195671|ref|YP_500477.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151221952|ref|YP_001332774.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|161510065|ref|YP_001575724.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221142169|ref|ZP_03566662.1| response regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253735272|ref|ZP_04869437.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257425960|ref|ZP_05602384.1| response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257428625|ref|ZP_05605023.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257431262|ref|ZP_05607639.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257433942|ref|ZP_05610300.1| response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257436858|ref|ZP_05612902.1| response regulator [Staphylococcus aureus subsp. aureus M876] gi|258452662|ref|ZP_05700661.1| DNA-binding response regulator [Staphylococcus aureus A5948] gi|262050140|ref|ZP_06022994.1| hypothetical protein SAD30_1104 [Staphylococcus aureus D30] gi|262052678|ref|ZP_06024870.1| hypothetical protein SA930_0814 [Staphylococcus aureus 930918-3] gi|282904423|ref|ZP_06312311.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|282906246|ref|ZP_06314101.1| two-component system NarL family response regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282909165|ref|ZP_06316983.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911471|ref|ZP_06319273.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282914643|ref|ZP_06322429.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282917116|ref|ZP_06324874.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus D139] gi|282919609|ref|ZP_06327344.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus C427] gi|282924179|ref|ZP_06331854.1| two-component system, NarL family, response regulator [Staphylococcus aureus A9765] gi|282924989|ref|ZP_06332655.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus C101] gi|283770932|ref|ZP_06343824.1| two-component system NarL family response regulator [Staphylococcus aureus subsp. aureus H19] gi|283958601|ref|ZP_06376052.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|284024894|ref|ZP_06379292.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 132] gi|293503715|ref|ZP_06667562.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus 58-424] gi|293510736|ref|ZP_06669441.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus M809] gi|293537278|ref|ZP_06671958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|294850276|ref|ZP_06791011.1| two-component system [Staphylococcus aureus A9754] gi|295428426|ref|ZP_06821055.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|297207436|ref|ZP_06923873.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297590607|ref|ZP_06949245.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300911520|ref|ZP_07128965.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304380550|ref|ZP_07363225.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|21204959|dbj|BAB95654.1| MW1789 [Staphylococcus aureus subsp. aureus MW2] gi|49242219|emb|CAG40926.1| putative response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|49245108|emb|CAG43574.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57284823|gb|AAW36917.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus COL] gi|87127700|gb|ABD22214.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203229|gb|ABD31039.1| DNA-binding response regulator, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150374752|dbj|BAF68012.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus str. Newman] gi|160368874|gb|ABX29845.1| response regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726679|gb|EES95408.1| response regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257271654|gb|EEV03800.1| response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257275466|gb|EEV06953.1| response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257278210|gb|EEV08858.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257282035|gb|EEV12172.1| response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257284209|gb|EEV14332.1| response regulator [Staphylococcus aureus subsp. aureus M876] gi|257859637|gb|EEV82486.1| DNA-binding response regulator [Staphylococcus aureus A5948] gi|259159427|gb|EEW44479.1| hypothetical protein SA930_0814 [Staphylococcus aureus 930918-3] gi|259161765|gb|EEW46353.1| hypothetical protein SAD30_1104 [Staphylococcus aureus D30] gi|282313355|gb|EFB43751.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus C101] gi|282317419|gb|EFB47793.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus C427] gi|282319603|gb|EFB49955.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus D139] gi|282321824|gb|EFB52149.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282325166|gb|EFB55476.1| response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282327429|gb|EFB57724.1| response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331538|gb|EFB61052.1| two-component system NarL family response regulator [Staphylococcus aureus subsp. aureus Btn1260] gi|282592974|gb|EFB97976.1| two-component system, NarL family, response regulator [Staphylococcus aureus A9765] gi|282596041|gb|EFC01005.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|283461079|gb|EFC08169.1| two-component system NarL family response regulator [Staphylococcus aureus subsp. aureus H19] gi|283790750|gb|EFC29567.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|290920123|gb|EFD97191.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|291095381|gb|EFE25646.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus 58-424] gi|291466627|gb|EFF09148.1| two-component system, NarL family, response regulator [Staphylococcus aureus subsp. aureus M809] gi|294822892|gb|EFG39326.1| two-component system [Staphylococcus aureus A9754] gi|295127826|gb|EFG57463.1| two-component system [Staphylococcus aureus subsp. aureus EMRSA16] gi|296887899|gb|EFH26795.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297575493|gb|EFH94209.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|300887152|gb|EFK82352.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|302333513|gb|ADL23706.1| two-component response regulator receiver protein [Staphylococcus aureus subsp. aureus JKD6159] gi|302751657|gb|ADL65834.1| two-component response regulator receiver protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340879|gb|EFM06804.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437687|gb|ADQ76758.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|315195759|gb|EFU26146.1| response regulator [Staphylococcus aureus subsp. aureus CGS00] gi|315196803|gb|EFU27147.1| response regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320141302|gb|EFW33147.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320143570|gb|EFW35350.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|323438857|gb|EGA96594.1| two-component response regulator protein [Staphylococcus aureus O11] gi|323441701|gb|EGA99346.1| two-component response regulator protein [Staphylococcus aureus O46] gi|329314524|gb|AEB88937.1| DNA-binding response regulator [Staphylococcus aureus subsp. aureus T0131] gi|329729501|gb|EGG65903.1| putative oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21189] gi|329732948|gb|EGG69292.1| putative oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21193] Length = 207 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + +G + D E ++ L++RE L+ Sbjct: 98 GADGYEMKDVEPQQLIETIRRVMNGEKMIHPKAQDVFETVSQKPHYTNKLSKREIEVLRE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIAE L +S T+ ++ KL +R QA A+ I Sbjct: 158 MVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207 >gi|15924838|ref|NP_372372.1| two-component response regulator-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|15927422|ref|NP_374955.1| hypothetical protein SA1666 [Staphylococcus aureus subsp. aureus N315] gi|148268320|ref|YP_001247263.1| two component LuxR family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394382|ref|YP_001317057.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156980164|ref|YP_001442423.1| two-component response regulator-like protein [Staphylococcus aureus subsp. aureus Mu3] gi|253315179|ref|ZP_04838392.1| two-component response regulator-like protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006636|ref|ZP_05145237.2| two-component response regulator-like protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793793|ref|ZP_05642772.1| two-component system transcriptional regulator [Staphylococcus aureus A9781] gi|258413730|ref|ZP_05682003.1| two-component system transcriptional regulator [Staphylococcus aureus A9763] gi|258420763|ref|ZP_05683702.1| two component transcriptional regulator [Staphylococcus aureus A9719] gi|258438424|ref|ZP_05689708.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|258443869|ref|ZP_05692208.1| two component transcriptional regulator [Staphylococcus aureus A8115] gi|258447324|ref|ZP_05695471.1| response regulator receiver [Staphylococcus aureus A6300] gi|258448193|ref|ZP_05696320.1| response regulator receiver [Staphylococcus aureus A6224] gi|258453374|ref|ZP_05701357.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|269203485|ref|YP_003282754.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|282895146|ref|ZP_06303365.1| two-component system, NarL family, response regulator [Staphylococcus aureus A8117] gi|282928586|ref|ZP_06336185.1| two-component system, NarL family, response regulator [Staphylococcus aureus A10102] gi|295406155|ref|ZP_06815963.1| hypothetical protein SMAG_01317 [Staphylococcus aureus A8819] gi|296276020|ref|ZP_06858527.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MR1] gi|297244922|ref|ZP_06928799.1| two-component system [Staphylococcus aureus A8796] gi|13701641|dbj|BAB42934.1| SA1666 [Staphylococcus aureus subsp. aureus N315] gi|14247620|dbj|BAB58010.1| two-component response regulator homolog [Staphylococcus aureus subsp. aureus Mu50] gi|147741389|gb|ABQ49687.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JH9] gi|149946834|gb|ABR52770.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|156722299|dbj|BAF78716.1| two-component response regulator homolog [Staphylococcus aureus subsp. aureus Mu3] gi|257787765|gb|EEV26105.1| two-component system transcriptional regulator [Staphylococcus aureus A9781] gi|257839517|gb|EEV63988.1| two-component system transcriptional regulator [Staphylococcus aureus A9763] gi|257843367|gb|EEV67777.1| two component transcriptional regulator [Staphylococcus aureus A9719] gi|257848468|gb|EEV72459.1| two component transcriptional regulator [Staphylococcus aureus A9299] gi|257851275|gb|EEV75218.1| two component transcriptional regulator [Staphylococcus aureus A8115] gi|257853911|gb|EEV76867.1| response regulator receiver [Staphylococcus aureus A6300] gi|257858432|gb|EEV81308.1| response regulator receiver [Staphylococcus aureus A6224] gi|257864466|gb|EEV87211.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|262075775|gb|ACY11748.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ED98] gi|282589795|gb|EFB94880.1| two-component system, NarL family, response regulator [Staphylococcus aureus A10102] gi|282762490|gb|EFC02631.1| two-component system, NarL family, response regulator [Staphylococcus aureus A8117] gi|285817528|gb|ADC38015.1| Two-component response regulator-like protein [Staphylococcus aureus 04-02981] gi|294969152|gb|EFG45173.1| hypothetical protein SMAG_01317 [Staphylococcus aureus A8819] gi|297178002|gb|EFH37250.1| two-component system [Staphylococcus aureus A8796] gi|312830220|emb|CBX35062.1| response regulator [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315130508|gb|EFT86494.1| hypothetical protein CGSSa03_09695 [Staphylococcus aureus subsp. aureus CGS03] gi|329727450|gb|EGG63906.1| putative oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21172] Length = 207 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + +G + D E ++ L++RE L+ Sbjct: 98 GADGYEMKDVEPQQLIETIRRVMNGEKMIHPKAQDVFETVSQKPHYTNKLSKREIEVLRE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIAE L +S T+ ++ KL +R QA A+ I Sbjct: 158 MVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207 >gi|332523307|ref|ZP_08399559.1| response regulator receiver domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332314571|gb|EGJ27556.1| response regulator receiver domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 213 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + A G A + ++ + LT RE L Sbjct: 98 AGAKGYMLKTSSAAEILNAIRKVAKGQLAIETEVDKKIKAHNQHPDLHEELTAREYDILY 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 158 LLAKGYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFRHHLV 208 >gi|328881828|emb|CCA55067.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 223 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 14/121 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSAA-------R 172 GY++ ++ L + V A G V+ ++ L + + AA Sbjct: 100 GATGYLLKSASTEELIDAVRRTAVGDPVFTPGLAGLVLGEYRRLASEPAPAAGADEPKAP 159 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 160 QLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERG 219 Query: 233 Y 233 Sbjct: 220 L 220 >gi|229916670|ref|YP_002885316.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] gi|229468099|gb|ACQ69871.1| two component transcriptional regulator, LuxR family [Exiguobacterium sp. AT1b] Length = 230 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELF------------ 164 L +G+++ L + V A Y V+ ++ L Sbjct: 98 LEAGASGFLLKEVASTELISAVRAVAKDGAYLHPKVTTNVLKEYRRLLQFKGEQAGRGVE 157 Query: 165 -KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + + L+ RE L L DG ++ +I++ L +S TV ++ S K+D +R Q Sbjct: 158 SRTDDPVYQLLSRREVEVLHLLADGRSNRDISDMLFISEKTVKNHVSSVLRKMDVNDRTQ 217 Query: 224 AIAKAIRFGYI 234 A+ AIR G++ Sbjct: 218 AVVDAIRRGWV 228 >gi|56964850|ref|YP_176581.1| two-component response regulator of extracellular degradative enzyme [Bacillus clausii KSM-K16] gi|56911093|dbj|BAD65620.1| two-component response regulator of extracellular degradative enzyme [Bacillus clausii KSM-K16] Length = 235 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 21/132 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRS-------- 168 L +GY++ + L V + A G Y +I ++ L ++ Sbjct: 101 LRTGASGYLLKEMDAESLVEAVKVVASGGAYIHPKVTSNLIKEYRRLARQDEQYQDSIGF 160 Query: 169 ------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LT RE LQL DG + I E L +S TV ++ + K++ +R Sbjct: 161 REVEYRKPLHILTRRECEVLQLMTDGQNNRAIGESLYISEKTVKNHVSNILQKMNVNDRT 220 Query: 223 QAIAKAIRFGYI 234 QA+ ++I+ GY+ Sbjct: 221 QAVVESIKKGYV 232 >gi|313890015|ref|ZP_07823651.1| response regulator receiver domain protein [Streptococcus pseudoporcinus SPIN 20026] gi|313121606|gb|EFR44709.1| response regulator receiver domain protein [Streptococcus pseudoporcinus SPIN 20026] Length = 213 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + A G A + ++ + LT RE L Sbjct: 98 AGAKGYMLKTSSAAEILNAIRKVAKGQLAIETEVDKKIKAHNQHPDLHEELTAREYDILY 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 158 LLAKGYDNQTIADELFISLKTVKTHVSNILSKLEVDDRTQAVVYAFRHHLV 208 >gi|94985726|ref|YP_605090.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94556007|gb|ABF45921.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 194 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 11/111 (9%) Query: 125 GFHKNGYVIFTSEFLMLANEVI-IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GYV ++ LA ++ I AH ++ + LT RE+ L Sbjct: 93 SAGARGYVSKETDPESLARQLRDIVAH----------PDVDRLPQVDVPRLTPRESEVLP 142 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GY+++EIA+ LG+S TV +L KLDA +R +A+++A G + Sbjct: 143 LLAQGYSNKEIAKNLGVSPDTVKDHLARLYAKLDAGDRTEAVSRARSIGLL 193 >gi|218291050|ref|ZP_03495082.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218239004|gb|EED06210.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 506 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 7/124 (5%) Query: 118 IAFPVRLGFHKNGYVI-------FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + PV G ++ FT + + + A V+ + + + Sbjct: 382 LVCPVIDQRRLLGIMLLDHGGRPFTPDNAAIRMVEAMLARAGRMIVMQMYRQAGAAPITP 441 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE LQL DG ++EI L +S +TV ++ S KL A NR +A+AKA+R Sbjct: 442 LTTLTKREREILQLIADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEAVAKAMR 501 Query: 231 FGYI 234 I Sbjct: 502 ERII 505 >gi|323127832|gb|ADX25129.1| Two-component response regulator yvqC [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 213 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV GY++ TS + N + + G A + ++ + LT RE Sbjct: 94 PVIDA-GAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTARE 152 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 153 YDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 208 >gi|307133126|ref|YP_003885142.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya dadantii 3937] gi|313104103|sp|Q47188|EXPR_DICD3 RecName: Full=Transcriptional activator protein expR gi|306530655|gb|ADN00586.1| DNA-binding transcriptional regulatory protein ExpR [Dickeya dadantii 3937] Length = 250 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 26/196 (13%) Query: 62 GDIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSGQLS--VRLEGGL 112 + P ++ Y ++ H + +L P W ++ VI S + S L Sbjct: 48 SNYPTEWVDIYRNNNYQHIDPVILTAINKISPFSW---DDDLVISSKLKFSRIFNLSKDY 104 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLA-------------NEVIIEAHGACYQVITD 159 G F + + + F E ++I AH + + Sbjct: 105 DIVNGYTFVLHDPGNNLAALSFMIEEHRSEELEEIIQNNKDKLQMLLISAHEKLTSLYRE 164 Query: 160 FLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 S +L ++RE L A G T +EIA LG++ TV ++G+ KL Sbjct: 165 MSRNRNNSKSQEADLFSQRENEILHWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGV 224 Query: 219 VNRIQAIAKAIRFGYI 234 +N AI + I Sbjct: 225 LNAKHAIRLGVEMNLI 240 >gi|297158992|gb|ADI08704.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 228 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNL------ 174 L +G+++ L V + G + +E + +R L Sbjct: 97 LSAGASGFLLKDVTPEHLVAAVRMVRSGDALLAPAITRRLVERYARRDPDTSALHRDLAA 156 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+L G ++ E+A +L LS TV ++ KL +R+QA+ A G Sbjct: 157 LTPREAEVLRLLAQGLSNAELAARLHLSEATVKTHVARILAKLGLRDRVQAVVVAYETGL 216 Query: 234 IC 235 + Sbjct: 217 VS 218 >gi|294664443|ref|ZP_06729796.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605777|gb|EFF49075.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 213 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ ++ L + + G V E L+ RET L Sbjct: 100 LQAGACGYLLKSALRRELVDTIRDVRRGQRRHVPASVAENIAAH-VLDDALSARETEVLN 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G ++++I L +S TV A++ + KL +R A+ A+R G + Sbjct: 159 LVATGCSNKQIGSALRISEETVKAHMKNILGKLGVRDRTHAVTVALRRGILS 210 >gi|256784889|ref|ZP_05523320.1| two-component system response regulator [Streptomyces lividans TK24] Length = 226 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS--AARNL 174 L G+++ + F L + V + A G ++I +F+ R AA +L Sbjct: 95 LAAGAGGFLLKDATFPELLHAVRVVAGGNALLSPEITKRLIAEFVHARGSRLPVPAAGDL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RET L L G ++ EIA +L ++ HTV ++ KL+ +R QA+ A G + Sbjct: 155 TARETEVLTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELRDRAQAVIVAYELGLV 214 >gi|225022047|ref|ZP_03711239.1| hypothetical protein CORMATOL_02079 [Corynebacterium matruchotii ATCC 33806] gi|224945168|gb|EEG26377.1| hypothetical protein CORMATOL_02079 [Corynebacterium matruchotii ATCC 33806] Length = 212 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G T L + + +LT RE L+L Sbjct: 104 AGALGYLLKDAPPEELLAAVRSAAEGDSTLSPTVANRLMTRVRTPRTSLTPRELEVLKLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI L LS TV ++L KL +R A+A A + G + Sbjct: 164 ASGSSNREIGRTLLLSEATVKSHLVHIYDKLGVRSRTSAVAAARKQGVL 212 >gi|322437485|ref|YP_004219575.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321165378|gb|ADW71081.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 244 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + +GY++ + L ++ A G + + LE F ++ R L+ERE L+ Sbjct: 134 MSAGASGYLLKGIDGSTLVQQLRHVASGG-RAMSPEALEKFTDYLTS-RKLSEREIEVLR 191 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EIA +L ++ T+ ++ S KL A +R QA+ AI+ G + Sbjct: 192 LVAKGNSNKEIAAQLFVTEDTIKVHVRSMLAKLHASDRTQAVVIAIQRGLL 242 >gi|320010465|gb|ADW05315.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 250 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 128 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 187 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 188 TERELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 247 >gi|256785092|ref|ZP_05523523.1| two-component system response regulator [Streptomyces lividans TK24] gi|289768986|ref|ZP_06528364.1| two-component system response regulator [Streptomyces lividans TK24] gi|289699185|gb|EFD66614.1| two-component system response regulator [Streptomyces lividans TK24] Length = 224 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSC 181 GY++ + L V A G V + + + ++ A L+ RE Sbjct: 111 AGATGYLLKDAPRDDLFTAVRAAAQGRTVLSPAVASRLVSAVRAPKTPGAEPLSAREREV 170 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G +++EIA +L +S TV +L KL +R A+A A G + Sbjct: 171 LALVARGTSNKEIARELFISEATVKTHLTHLYAKLGVNDRAAAVATAYDRGIL 223 >gi|162146990|ref|YP_001601451.1| two-component system regulatory protein [Gluconacetobacter diazotrophicus PAl 5] gi|209544054|ref|YP_002276283.1| two component LuxR family transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5] gi|161785567|emb|CAP55138.1| putative two-component system regulatory protein [Gluconacetobacter diazotrophicus PAl 5] gi|209531731|gb|ACI51668.1| two component transcriptional regulator, LuxR family [Gluconacetobacter diazotrophicus PAl 5] Length = 201 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 36/109 (33%), Positives = 56/109 (51%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA + A G + + D + + A LT RE L+LA Sbjct: 96 AGVRGYLLKDAPVEQLAAAIRTVATGGTF-IPPDLMA--AAWDAGADPLTARERDALRLA 152 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++++IA +LGLS TV YL +A KL+A NRI+A A G++ Sbjct: 153 EEGLSNKDIARRLGLSPGTVRNYLSTAAGKLNAANRIEAGRIARANGWL 201 >gi|21223813|ref|NP_629592.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|7105984|emb|CAB76009.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 224 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSC 181 GY++ + L V A G V + + + ++ A L+ RE Sbjct: 111 AGATGYLLKDAPRDDLFTAVRAAAQGRTVLSPAVASRLVSAVRAPKTPGAEPLSAREREV 170 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G +++EIA +L +S TV +L KL +R A+A A G + Sbjct: 171 LALVARGTSNKEIARELFISEATVKTHLTHLYAKLGVNDRAAAVATAYDRGIL 223 >gi|289165996|ref|YP_003456134.1| Transcriptional regulator, LuxR family with an autoinducer-binding domain [Legionella longbeachae NSW150] gi|288859169|emb|CBJ13099.1| Transcriptional regulator, LuxR family with an autoinducer-binding domain [Legionella longbeachae NSW150] Length = 248 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 5/157 (3%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKNGYV 132 D L LLPI W ++ + ++ + E + G+ P+ + + Sbjct: 74 DRTLEATEQSLLPIFWDVKEQLRLAKNKRMRRFKQESLIFGLDKGLCIPLHGPKGEFVIL 133 Query: 133 IF---TSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDG 188 + +E + E ++ FL L ++ LT+RE CL+L +G Sbjct: 134 VLHQRINEHGLKNWENHVDTWLGILHTYFHFLRLLLNEKKIGVVPLTKREQECLRLTAEG 193 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + E IA+ L +S TVN +L +A KL N+ AI Sbjct: 194 FRLELIAQLLKISKRTVNFHLQNANKKLGVTNKYLAI 230 >gi|270159175|ref|ZP_06187831.1| LuxR family transcriptional regulator [Legionella longbeachae D-4968] gi|269987514|gb|EEZ93769.1| LuxR family transcriptional regulator [Legionella longbeachae D-4968] Length = 247 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 5/157 (3%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKNGYV 132 D L LLPI W ++ + ++ + E + G+ P+ + + Sbjct: 73 DRTLEATEQSLLPIFWDVKEQLRLAKNKRMRRFKQESLIFGLDKGLCIPLHGPKGEFVIL 132 Query: 133 IF---TSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQLAGDG 188 + +E + E ++ FL L ++ LT+RE CL+L +G Sbjct: 133 VLHQRINEHGLKNWENHVDTWLGILHTYFHFLRLLLNEKKIGVVPLTKREQECLRLTAEG 192 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + E IA+ L +S TVN +L +A KL N+ AI Sbjct: 193 FRLELIAQLLKISKRTVNFHLQNANKKLGVTNKYLAI 229 >gi|251787751|ref|YP_003002472.1| LuxR family transcriptional regulator [Dickeya zeae Ech1591] gi|247536372|gb|ACT04993.1| transcriptional regulator, LuxR family [Dickeya zeae Ech1591] Length = 250 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 66/196 (33%), Gaps = 26/196 (13%) Query: 62 GDIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSGQLS--VRLEGGL 112 + P ++ Y + H + +L P W ++ VI S + S L Sbjct: 48 SNYPPEWVDIYRSNNYQHIDPVILTAINKISPFSW---DDDLVISSKLKFSRIFNLSKEY 104 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 G F + + + F +SE + + L ++ Sbjct: 105 DIVNGYTFVLHDPGNNLATLSFMVEEHRSSELEEIIQNNRDKLQMLLISAHEKLTSLHRE 164 Query: 167 RSSAARN--------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 S N ++RE L A G T +EIA LG++ TV ++G+ KL Sbjct: 165 MSRNRHNSKPQEADIFSQRENEILYWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGV 224 Query: 219 VNRIQAIAKAIRFGYI 234 +N AI + I Sbjct: 225 LNAKHAIRLGVEMNLI 240 >gi|226365530|ref|YP_002783313.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244020|dbj|BAH54368.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 228 Score = 105 bits (261), Expect = 7e-21, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCL 182 GYV+ + L + + G + + + +++ LTERE L Sbjct: 117 AGARGYVVKDVDTTELVRAIRAVSRGESAFDSRSASAVIRSLNGQTTPREGLTERELEVL 176 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QL G ++ +I E+L +S TV ++ + KLD R +A+ +A + G I Sbjct: 177 QLLAKGLSNAKIGERLFISATTVKFHVSNIMRKLDVGRRAEAVYEAGKLGLI 228 >gi|302545305|ref|ZP_07297647.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462923|gb|EFL26016.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 209 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 47/110 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L V A G + +L + R + L+ RE L+L Sbjct: 100 AGAAGYLLKGSSRQELIGAVQTAARGETVLTPSLAGKLLRTRVAEPSPLSGRECEVLRLV 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G G T+ EI KL ++ TV +L + KL +R A+ A+ G + Sbjct: 160 GQGLTNAEIGAKLFVAEATVKTHLLRSFKKLGVSDRTAAVMTAMERGLLS 209 >gi|256378098|ref|YP_003101758.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922401|gb|ACU37912.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 225 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L +G+++ S N + + A G +V L+ F R A Sbjct: 100 LRAGASGFLLKNSPPEDTLNAIRVIAAGDAVVAPRVTRRLLDRFAGRLDTAPAPADDRLD 159 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L G ++ E+AE++ ++ TV +LG KL +R+QA+ A G Sbjct: 160 VLTEREREVLVLVARGLSNVELAERMHVAEATVKTHLGRVLTKLGLRDRVQAVVLAYELG 219 Query: 233 YI 234 + Sbjct: 220 LV 221 >gi|312863730|ref|ZP_07723968.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] gi|311101266|gb|EFQ59471.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] Length = 214 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 2/112 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + G A + + ++ +LT RE L Sbjct: 99 AGAKGYMLKTSSATEILNSIRKVYRGEEAIETEVDNKIKYHDSHPDLHDDLTARERDILA 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L GY ++ IA +L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 159 LLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVS 210 >gi|290960685|ref|YP_003491867.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260650211|emb|CBG73327.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 201 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ + LA V A G +VI L L + LT RET L+ Sbjct: 94 LAAQVGGFLLKDAPPDRLAGAVRDVAAGK--RVIDPQLALAAF-DNGENPLTPRETEVLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A DG + +IA +L LSV TV YL + KL+A NR+ AI A G++ Sbjct: 151 MAADGAEAADIASRLFLSVGTVRNYLTTVVTKLNARNRVDAIRVARESGWL 201 >gi|218289507|ref|ZP_03493735.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218240375|gb|EED07557.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 210 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 7/148 (4%) Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF----HKNGYVIFTSEFLMLANEVIIE 148 +E+ + E +L + P R+ +G++ T + L + Sbjct: 62 EEDGIDLIPALRKAAPETRILALSSFTDPARMARLASAGADGFLPKTVDPTHLLAAIRQV 121 Query: 149 AHGAC---YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A G ++ E + + LT RE+ L+ G +++EIA++L +S TV Sbjct: 122 AAGRVVFDRAMLKALQEPDAEEAKRLAQLTPRESQILRQVTKGLSNKEIADRLQISERTV 181 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGY 233 A+L KL +R A AIR G+ Sbjct: 182 KAHLQHIFDKLGVQDRTSAAVLAIRHGW 209 >gi|291004781|ref|ZP_06562754.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 212 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 14/154 (9%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 V E S ++ V L +A A +R G G+++ + L V A Sbjct: 58 EATRRIVAEGSSKVLVMTTFDLDEYALAA--LRGGAG--GFLLKDTPPDGLVTAVRSVAS 113 Query: 151 GAC---YQVITDFLELFK-------KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 G V L+ F + LTERE L L G ++ E+A +L L Sbjct: 114 GDAVVSPSVTRRLLDRFLGGDGGALRDPGVLDVLTEREREVLVLVAKGLSNAELASRLFL 173 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S T+ ++G KLD +R+QA+ A G + Sbjct: 174 SEATIKTHVGRILSKLDIRDRVQAVVLAYETGLV 207 >gi|251799449|ref|YP_003014180.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247547075|gb|ACT04094.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 220 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 18/126 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLE-----------LFK 165 L +GY++ + + H +I +F++ L Sbjct: 93 LENGVHGYLLKDMPSEAIIGAIRTVYNGGTVLQHDITSMLIKEFVKITDLNPDKSHPLGA 152 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + + LTERE L L G G ++EIA L L+ TV ++ + KL +R QA Sbjct: 153 QEPAELKQLTEREKEVLALLGQGLNNKEIAGSLFLTEGTVKNHVSNVIAKLGLRDRTQAA 212 Query: 226 AKAIRF 231 A+R Sbjct: 213 IYAVRH 218 >gi|227501858|ref|ZP_03931907.1| possible response regulator [Corynebacterium accolens ATCC 49725] gi|227077352|gb|EEI15315.1| possible response regulator [Corynebacterium accolens ATCC 49725] Length = 223 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + V A G L + + +LT RE LQL Sbjct: 115 AGAVGYLLKDAPPQELLDAVHSTAEGDSALSPIVADRLMTRVRTPRTSLTPRELEVLQLV 174 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +I + L LS TV ++L KL +R A+A A G + Sbjct: 175 AAGASNRQIGQDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 223 >gi|115371976|ref|ZP_01459288.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|115370941|gb|EAU69864.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 209 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + + + + H V + + +R LTERE L+ Sbjct: 100 AGARGYLLKGATGPEILDAIRAV-HRGLRHVAPEAAAMLVER-VGDSPLTERERQTLEAM 157 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++++IA++L ++ TV A++ KL +R QA+ +A+R G I Sbjct: 158 ARGRSNKQIAQELSITEATVKAHVTQILSKLGVDDRTQAVTRALRRGLI 206 >gi|17229630|ref|NP_486178.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17131229|dbj|BAB73837.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 209 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ +E L N + H + D +R S L+ERE L+ Sbjct: 99 LQAGAKGYLLKETEPDELLNAIRTV-HRGHKYIPPDVGAKLVQRLSNPE-LSERELEVLR 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IA+ L + TV +++ KLD +R QA+ A++ G + Sbjct: 157 SLAQGMSNADIADALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKRGIV 207 >gi|182439176|ref|YP_001826895.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779828|ref|ZP_08239093.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178467692|dbj|BAG22212.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660161|gb|EGE45007.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 234 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 13/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN------ 173 GY++ ++ L + V A G V+ ++ L + A N Sbjct: 112 GATGYLLKSASTQELTDAVRSTAAGDPVFTPGLAGLVLGEYRRLASDPAPVASNEPKAPQ 171 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 172 LTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 231 >gi|126347864|emb|CAJ89584.1| putative two component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 224 Score = 105 bits (261), Expect = 8e-21, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLE----LFKKRSSAAR 172 L +G+++ + L V + A G ++I DF + + + + Sbjct: 99 LRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTRRLIADFAKQRPTTRGRPALRLK 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA+ L L+ TV ++ KLD +R QA+ A G Sbjct: 159 GLTERETEVLTLVARGQSNTEIAQTLVLAEQTVKTHVSRVLTKLDLRDRAQAVVFAYESG 218 Query: 233 YIC 235 + Sbjct: 219 LVT 221 >gi|302546104|ref|ZP_07298446.1| transcriptional regulatory protein DegU [Streptomyces hygroscopicus ATCC 53653] gi|302463722|gb|EFL26815.1| transcriptional regulatory protein DegU [Streptomyces himastatinicus ATCC 53653] Length = 228 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 13/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSA------ARN 173 GY++ ++ L + V A G V+ ++ L + + A A Sbjct: 106 GATGYLLKSASTEELIDAVRRTAVGDAVFTPGLAGLVLGEYRRLASEPAPATADQPVAPQ 165 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 166 LTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEAGL 225 >gi|295839668|ref|ZP_06826601.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|197698511|gb|EDY45444.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 239 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR--NLTERE 178 L GYV + LA + G +V L ++ +R +LTERE Sbjct: 123 LRAGAAGYVYKDIDPEALAGAIRSVHAGHVLLQPEVARTLLAQEEQAPQPSRGGSLTERE 182 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R GY Sbjct: 183 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGY 237 >gi|182438321|ref|YP_001826040.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778972|ref|ZP_08238237.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178466837|dbj|BAG21357.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659305|gb|EGE44151.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 251 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 129 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 188 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 189 TERELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 248 >gi|229164358|ref|ZP_04292288.1| Two component transcriptional regulator, LuxR [Bacillus cereus R309803] gi|228619101|gb|EEK75997.1| Two component transcriptional regulator, LuxR [Bacillus cereus R309803] Length = 215 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K + Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|297161250|gb|ADI10962.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 238 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 13/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR------N 173 GY++ ++ L + V A G V+ ++ L + AA Sbjct: 115 GATGYLLKSASTEDLLDAVRRTAAGEPVFTPGLAGLVLGEYRRLATDPAPAAPDRPVAPR 174 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 175 LTEREKEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 234 >gi|158340472|ref|YP_001521466.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158310713|gb|ABW32327.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 215 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 12/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-----------ELFKKRSSAAR 172 L GY++ L + + A +Q+ + + Sbjct: 95 LLAGACGYLMKDIPPDDLGQAIKL-ADAGVFQLAPEVAGKLIGSLKTQRAGDAPKLPTDT 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G T++EIA+ LS TV ++ + ++L +R QA A+ G Sbjct: 154 PLTTRELEVLKLLAKGNTNKEIAKAFNLSEGTVKNHVSNILMRLGLRDRTQAAVYAVEHG 213 Query: 233 Y 233 Sbjct: 214 L 214 >gi|319950310|ref|ZP_08024229.1| two component transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] gi|319436002|gb|EFV91203.1| two component transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] Length = 250 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 18/129 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF---------------K 165 L +G+++ S+ L + + HG +V +E Sbjct: 118 LRAGASGFLLKNSDPDDLVDGIRAVGHGHALLAPEVTRRVIERLAAPPPADDAPDAGRPG 177 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+S LT RET L+L G ++ EIA++L + TV ++ S KL +R+QA+ Sbjct: 178 PRASELAGLTARETEVLRLVARGLSNAEIADELVVGEATVKTHVSSCLAKLHLRDRVQAV 237 Query: 226 AKAIRFGYI 234 A G + Sbjct: 238 VLAYEVGLV 246 >gi|258510158|ref|YP_003183592.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476884|gb|ACV57203.1| GAF modulated transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 506 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 7/124 (5%) Query: 118 IAFPVRLGFHKNGYVI-------FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 + PV G ++ FT + + + A V+ + + + Sbjct: 382 LVCPVIDNRRMLGIMLLDHGGRPFTPDNATIRMVEAMLARAGRMIVMQMYRQAGAAPITP 441 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE LQL DG ++EI L +S +TV ++ S KL A NR +A+AKA+R Sbjct: 442 LTTLTKREREILQLIADGVDTKEIGRALHISDYTVTEHVSSILRKLGAKNRTEAVAKAMR 501 Query: 231 FGYI 234 I Sbjct: 502 ERII 505 >gi|256397990|ref|YP_003119554.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256364216|gb|ACU77713.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 221 Score = 104 bits (260), Expect = 8e-21, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSS---AARN 173 L +G+++ + L + V + A G ++I DF S A Sbjct: 96 LRAGASGFLLKDAPAAELVHAVRVVAAGDALLAPSVTRRLIADFAARRPADQSGPVAVAA 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G +++EIA +L L+ TV ++ K +R QA+ A G Sbjct: 156 LTPRELDVLRLIARGLSNQEIAGELVLAEQTVKTHVSRILAKTGLRDRAQAVVLAYESGL 215 Query: 234 IC 235 + Sbjct: 216 VT 217 >gi|205374169|ref|ZP_03226968.1| hypothetical protein Bcoam_13554 [Bacillus coahuilensis m4-4] Length = 199 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S LA+ + G EL + + LTERE L L Sbjct: 94 AGVMGYLLKDSPSEELASSIRRIMQGKRIYA----PELIEDVYTEQNPLTEREIEVLGLV 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG + EIA +L + TV Y+ + KL+ NRI+AI ++ G+ Sbjct: 150 ADGKNTNEIANELSIKAGTVRNYISAILDKLEVKNRIEAITQSKEKGW 197 >gi|163758000|ref|ZP_02165088.1| putative GerE/LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] gi|162284289|gb|EDQ34572.1| putative GerE/LuxR family transcriptional regulator [Hoeflea phototrophica DFL-43] Length = 224 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 80/215 (37%), Gaps = 17/215 (7%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI-LIETYGDDF-LFH 79 LI + A+ + + + D L N+ D L++ + Sbjct: 25 DLISDYTGAKCYLVARYDHYSDRHHDFVLT---SNWPFDLVRNLGAGLVDAQARTSEVSR 81 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 P+ + + V L + + ++F + Sbjct: 82 CLHAFEPLFQDVDGVAVNLPENLSPRVCLVPYNVGKVRLLM----------ALLFEKDAF 131 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 + + + A A Y + F E+ S + +LT+RE CL G+G TS+EIA +G Sbjct: 132 VSHDRIRDAALAASYHAV-HFTEITTT-SDSLSDLTDREVECLSWIGEGKTSDEIALIIG 189 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S +TVN Y+ S K A R +A+A A+R I Sbjct: 190 ISRNTVNNYITSIMNKTGAKTRSEAVAFAVRQRII 224 >gi|121533453|ref|ZP_01665281.1| two component transcriptional regulator, LuxR family [Thermosinus carboxydivorans Nor1] gi|121308012|gb|EAX48926.1| two component transcriptional regulator, LuxR family [Thermosinus carboxydivorans Nor1] Length = 225 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 16/126 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA------- 171 GY++ E ML + G + +++ + + +K+ + Sbjct: 97 AGAAGYLLKDVEPSMLVAAIRAVYEGESFIYPTLAKRLLDETIRRGEKKKQESAVQPARR 156 Query: 172 --RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL G ++ EIA+KL LS TV +L + K++ +R QA+ AI Sbjct: 157 GEERLTYRELEVLQLVAQGLSNSEIAQKLYLSEKTVKNHLTNIFRKINVTDRTQALIYAI 216 Query: 230 RFGYIC 235 R + Sbjct: 217 RHKIVV 222 >gi|329935654|ref|ZP_08285461.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304915|gb|EGG48786.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 224 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKK----RSSAAR 172 L +G+++ + L V + A G ++I DF + + + Sbjct: 99 LRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTRRLIADFAKSRPGGRGGPAQRLK 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L L G ++ EIAE L L+ TV ++ KL +R QA+ A G Sbjct: 159 GLTQRETEVLTLVARGLSNSEIAETLVLAEQTVKTHVSRVLTKLGLRDRAQAVVFAYESG 218 Query: 233 YIC 235 + Sbjct: 219 LVA 221 >gi|312132068|ref|YP_003999408.1| two component transcriptional regulator, luxr family [Leadbetterella byssophila DSM 17132] gi|311908614|gb|ADQ19055.1| two component transcriptional regulator, LuxR family [Leadbetterella byssophila DSM 17132] Length = 204 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 52/109 (47%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ ++ + ++ + G Y + L++ ++ LT RE L L Sbjct: 98 AGASGYLLKSASREEMEEAILTVSSGKLYMSLE--LDISREEIKKMPVLTTREREVLVLI 155 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ +IAE+L +S HTV+++ + K + N I A + G I Sbjct: 156 AEGLTNPQIAERLFVSPHTVDSHRKNLLTKFEVNNTAGLIKWAAKNGLI 204 >gi|302545230|ref|ZP_07297572.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462848|gb|EFL25941.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L +G+++ + LA+ V + A G ++I +F + A Sbjct: 98 LRAGASGFLLKDASAEELAHAVRVVAAGDALLAPNITKRLIAEFSRVTAAAPRAPLKDRV 157 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERET L L G ++ EIA +L ++ TV ++G +KL +R QA A Sbjct: 158 GDLTERETEVLALIAQGLSNAEIATRLVVAEQTVKTHVGRILLKLGLRDRTQAAVFAYES 217 Query: 232 GYI 234 G + Sbjct: 218 GLV 220 >gi|239928815|ref|ZP_04685768.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291437136|ref|ZP_06576526.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340031|gb|EFE66987.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 217 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSC 181 GY++ + L V A G V + + + R++ L+ RE Sbjct: 104 AGATGYLLKDAPREELFTAVRAAADGRTVLSPAVASRLVCAVRAPRTAGGEPLSAREREV 163 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ EIA +L +S TV +L KL +R A+A A G + Sbjct: 164 LALVARGTSNREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYDRGIL 216 >gi|295689487|ref|YP_003593180.1| LuxR family two component transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295431390|gb|ADG10562.1| two component transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 207 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ +S L + + G + + + A L+ERE L+ Sbjct: 97 LRAGASGYLLKSSLRRELIDTIRAVL-GGQRYLHPEVAHDIAVN-AIAEPLSEREIDVLK 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G ++EIA L LS TV ++ S KLD +R QA+ A R G I Sbjct: 155 RVANGAANKEIARALSLSEDTVKGHMRSIFSKLDVTDRTQAVTVAHRRGIIA 206 >gi|228477324|ref|ZP_04061962.1| DNA-binding response regulator [Streptococcus salivarius SK126] gi|228251343|gb|EEK10514.1| DNA-binding response regulator [Streptococcus salivarius SK126] Length = 214 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 2/112 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + G A + + ++ +LT RE L Sbjct: 99 AGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPDLHDDLTARERDILA 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L GY ++ IA +L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 159 LLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVS 210 >gi|163734137|ref|ZP_02141578.1| Transcriptional activator protein RaiR, putative [Roseobacter litoralis Och 149] gi|161392673|gb|EDQ17001.1| Transcriptional activator protein RaiR, putative [Roseobacter litoralis Och 149] Length = 154 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 8/155 (5%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 + W+ + + + + G L G + P+R + + E Sbjct: 1 MDWKRLDWSSKAARAFRAEAATFG--LGNQGYSIPIRGPNGQFALFTVNTSCDDEEWEEF 58 Query: 147 IEAHGACYQVITDF-----LELFKKRSSA-ARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 E++ +I + LE ++ +++L+ RE + L GY+ ++AE L + Sbjct: 59 TESNRRELILIAHYFNQKALEFEPNKTPEQSQSLSPREVDAMTLLAIGYSRAQVAETLSI 118 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 S HT+ Y+ SA KL A N A+A+A+ G I Sbjct: 119 SEHTLRVYIESARFKLGAANTTHAVARALSRGLIV 153 >gi|322373351|ref|ZP_08047887.1| DNA-binding response regulator VraR [Streptococcus sp. C150] gi|321278393|gb|EFX55462.1| DNA-binding response regulator VraR [Streptococcus sp. C150] Length = 214 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 2/112 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + G A + + ++ +LT RE L Sbjct: 99 AGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPDLHDDLTARERDILA 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L GY ++ IA +L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 159 LLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVS 210 >gi|311896797|dbj|BAJ29205.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 229 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAAR---- 172 L +G+++ L + + A ++I F E+ +S Sbjct: 101 LKAGASGFLLKDVPPTELVAAIRSVHGGDAVVAPTTTRRMIDRFAEVLPTPASTPGSTVL 160 Query: 173 -NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L G ++ EIA +L LS TV ++G KL +R+QA+ A Sbjct: 161 GPLTDREREVFLLVSQGLSNGEIAARLVLSEATVKTHVGRILAKLGLRDRVQAVVLAYEN 220 Query: 232 GYI 234 G + Sbjct: 221 GLV 223 >gi|21224033|ref|NP_629812.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|7801256|emb|CAB91120.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 237 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS--AARNL 174 L G+++ + F L + V + A G ++I +F+ R AA +L Sbjct: 106 LAAGAGGFLLKDATFPELLHAVRVVAGGNALLSPEITKRLIAEFVHARGSRLPVPAAGDL 165 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RET L L G ++ EIA +L ++ HTV ++ KL+ +R QA+ A G + Sbjct: 166 TARETEVLTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELRDRAQAVIVAYELGLV 225 >gi|284028348|ref|YP_003378279.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283807641|gb|ADB29480.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 210 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 47/110 (42%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY++ + L + A G L K+ S LTERE L L Sbjct: 96 DAGASGYLLKDAPPDDLFRAIRGTARGEVVLAPAVAARLVKRAGSPGPVLTEREVEILGL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ E+A++L +S TV ++L KL R A+A+AI I Sbjct: 156 LATGQSNRELAKRLFVSEATVKSHLSHIYTKLGVDTRAAAVARAIEQHII 205 >gi|223044000|ref|ZP_03614040.1| response regulator protein VraR [Staphylococcus capitis SK14] gi|222442543|gb|EEE48648.1| response regulator protein VraR [Staphylococcus capitis SK14] Length = 209 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A+ V +V+ KKR+ LTERE Sbjct: 95 LDAGVDSYILKTTSASDIADAVRKTYQRESVFEPEVLVKMRNRMKKRAELYEMLTEREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|254242162|ref|ZP_04935484.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192] gi|126195540|gb|EAZ59603.1| transcriptional regulator RhlR [Pseudomonas aeruginosa 2192] Length = 242 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 72/231 (31%), Gaps = 24/231 (10%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-- 73 + +++ ++ F Y P + G P +E Y Sbjct: 23 DSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTR-------PKTEVHGTYPKAWLERYQMQ 75 Query: 74 -----DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + ++W + ++ G P+R + Sbjct: 76 NYGAVDPAILNGLRSSEMVVWSD-----SLFDQSRMLWNEARDWGLCVGATLPIRAPNNL 130 Query: 129 NGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQ 183 + + +++ E+ + + +L S L+ RE LQ Sbjct: 131 LSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQ 190 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +S EIA L +S TVN + + K DA N+ A A A G I Sbjct: 191 WTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKTLAAAYAAALGLI 241 >gi|29832624|ref|NP_827258.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609744|dbj|BAC73793.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 215 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 14/121 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSA-------AR 172 GY++ ++ L + V A G V+ ++ L + + A A Sbjct: 92 GATGYLLKSASTEELTDAVRRTAVGDPVFTPGLAGLVLGEYRRLASEPAPATGAGEPRAP 151 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 152 QLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERG 211 Query: 233 Y 233 Sbjct: 212 L 212 >gi|15598673|ref|NP_252167.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1] gi|116051496|ref|YP_789670.1| transcriptional regulator RhlR [Pseudomonas aeruginosa UCBPP-PA14] gi|218890275|ref|YP_002439139.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58] gi|1710203|sp|P54292|RHLR_PSEAE RecName: Full=Regulatory protein rhlR; AltName: Full=Elastase modulator gi|9949621|gb|AAG06865.1|AE004768_10 transcriptional regulator RhlR [Pseudomonas aeruginosa PAO1] gi|151538|gb|AAA25983.1| rhlR [Pseudomonas aeruginosa] gi|452505|gb|AAA62130.1| regulatory protein [Pseudomonas aeruginosa] gi|1117918|gb|AAC44036.1| RhlR [Pseudomonas aeruginosa PAO1] gi|115586717|gb|ABJ12732.1| acylhomoserine lactone dependent transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|161724881|emb|CAO85753.1| RhlR protein [Pseudomonas aeruginosa] gi|211908969|gb|ACJ12779.1| rhamnosyl transferase I [actinobacterium MSA10] gi|211908971|gb|ACJ12780.1| rhamnosyl transferase I [actinobacterium MSA19] gi|218770498|emb|CAW26263.1| transcriptional regulator RhlR [Pseudomonas aeruginosa LESB58] gi|281331824|emb|CBI71035.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331826|emb|CBI71036.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331828|emb|CBI71037.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331830|emb|CBI71038.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331832|emb|CBI71039.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331834|emb|CBI71040.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331836|emb|CBI71041.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331838|emb|CBI71042.1| transcriptional regulator [Pseudomonas aeruginosa] gi|281331840|emb|CBI71043.1| transcriptional regulator [Pseudomonas aeruginosa] gi|299772610|gb|ADJ38517.1| transcriptional regulator RhlR [Pseudomonas sp. BSFD5] Length = 241 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 72/231 (31%), Gaps = 24/231 (10%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-- 73 + +++ ++ F Y P + G P +E Y Sbjct: 23 DSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTR-------PKTEVHGTYPKAWLERYQMQ 75 Query: 74 -----DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + ++W + ++ G P+R + Sbjct: 76 NYGAVDPAILNGLRSSEMVVWSD-----SLFDQSRMLWNEARDWGLCVGATLPIRAPNNL 130 Query: 129 NGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQ 183 + + +++ E+ + + +L S L+ RE LQ Sbjct: 131 LSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQ 190 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +S EIA L +S TVN + + K DA N+ A A A G I Sbjct: 191 WTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKTLAAAYAAALGLI 241 >gi|297197302|ref|ZP_06914699.1| two component transcriptional regulator [Streptomyces sviceus ATCC 29083] gi|297146673|gb|EFH28280.1| two component transcriptional regulator [Streptomyces sviceus ATCC 29083] Length = 228 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN------- 173 L +G+++ L V + G + +E F +R A + Sbjct: 96 LTAGASGFLLKDVTPEHLVAAVRLVRSGDALLAPTITRRLIERFAQREEAVPSADVHRDL 155 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G ++ E+AE+L LS TV ++G KL+ +R+QA+ A Sbjct: 156 SGLTPRELEVLRLLATGLSNAELAERLFLSPTTVKTHIGRILSKLELRDRVQAVVLAYES 215 Query: 232 GYIC 235 G I Sbjct: 216 GLIT 219 >gi|269128235|ref|YP_003301605.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313193|gb|ACY99567.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 253 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 56/122 (45%), Gaps = 14/122 (11%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA--------CYQVITDFLELFKK-----RSSAAR 172 +GY++ + V HG ++IT+F L K+ + A Sbjct: 130 AGASGYLLKEISIDEVPQAVRAV-HGGQSLISPSMASKLITEFAALAKRSEERQQQVPAP 188 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G + EIA++L +S +TV ++ + KL +R++A+ A+R Sbjct: 189 KLTEREMEVLRLVARGLGNREIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAVREK 248 Query: 233 YI 234 + Sbjct: 249 LL 250 >gi|256788263|ref|ZP_05526694.1| two-component system regulator [Streptomyces lividans TK24] gi|289772155|ref|ZP_06531533.1| two-component system regulator [Streptomyces lividans TK24] gi|289702354|gb|EFD69783.1| two-component system regulator [Streptomyces lividans TK24] Length = 240 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 14/121 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA-------R 172 GY++ ++ L + V A G V+ ++ L + + AA Sbjct: 117 GATGYLLKSASTEELRDAVRRTAAGDPVFTPGLAGLVLGEYRRLASEPAPAAGTDDPGAP 176 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 177 RLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERG 236 Query: 233 Y 233 Sbjct: 237 L 237 >gi|161724874|emb|CAO85748.1| PmrR protein [Pseudomonas sp. RW10S2] Length = 236 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 67/209 (32%), Gaps = 9/209 (4%) Query: 14 LQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG 73 ++ L ++ + F P + I L NY D + Sbjct: 14 ARDTQTLLEEVKAAARHLGFDYCAYGLRTPLPVTKPRIFMLSNYSRPWCDHYHANGYLLL 73 Query: 74 DDFLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFP--VRLGFHK 128 D + H + P++W + + + Q +R G + L Sbjct: 74 DPTVRHCQRSMQPVVWGDEIFADAPQLWDEARQAGLRHGWAQSCLEGSKGGGMLTLARSG 133 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G E + A+E + L + L+ERE L+ A DG Sbjct: 134 EGI----GEGELRAHETRMRWLANVAHQGFSRLLSDSWQPQPQSPLSEREREVLRWAADG 189 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 T E+A+ L LS+ TV + +A KL Sbjct: 190 KTLNEVADILTLSIETVKFHTRNAGAKLG 218 >gi|21220598|ref|NP_626377.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|5689930|emb|CAB51968.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] Length = 215 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 14/121 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA-------R 172 GY++ ++ L + V A G V+ ++ L + + AA Sbjct: 92 GATGYLLKSASTEELRDAVRRTAAGDPVFTPGLAGLVLGEYRRLASEPAPAAGTDDPGAP 151 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 152 RLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERG 211 Query: 233 Y 233 Sbjct: 212 L 212 >gi|262282221|ref|ZP_06059990.1| response regulator [Streptococcus sp. 2_1_36FAA] gi|262262675|gb|EEY81372.1| response regulator [Streptococcus sp. 2_1_36FAA] Length = 210 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L GY++ TS + + V A G A ++ ++ + +LT RE Sbjct: 91 PV-LDAGAKGYMLKTSSADEILHAVRKVARGEVAIETEVSKKVQHHRNHIELHDDLTARE 149 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 150 RDILGLLAKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 205 >gi|290957262|ref|YP_003488444.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260646788|emb|CBG69885.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSC 181 GY++ + L V A G V + + + R+ + L+ RE Sbjct: 111 AGATGYLLKDAPREELFTAVRAAAEGRTVLSPAVASRLVTAVRSPRTPGSEPLSAREREV 170 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G + EIA +L +S TV +L KL +R A+A A G + Sbjct: 171 LALVARGTANREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGIL 223 >gi|91776759|ref|YP_546515.1| LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710746|gb|ABE50674.1| transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 272 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 31/60 (51%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQ G ++ EIA L +S TV ++ + KLD NR A AKA R G I Sbjct: 211 TPREKEILQWVHTGKSNWEIATILEISPLTVKNHMQNILRKLDVQNRSHAAAKAYRLGLI 270 >gi|302521432|ref|ZP_07273774.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302430327|gb|EFL02143.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 264 Score = 104 bits (260), Expect = 9e-21, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 142 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLSEFKSMIQRTDERRLVPAPRL 201 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G +++IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 202 TDREMEVLKLVATGMNNKDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 261 >gi|318056754|ref|ZP_07975477.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318078616|ref|ZP_07985948.1| two-component system response regulator [Streptomyces sp. SA3_actF] gi|333024919|ref|ZP_08452983.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332744771|gb|EGJ75212.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 250 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 128 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLSEFKSMIQRTDERRLVPAPRL 187 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G +++IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 188 TDREMEVLKLVATGMNNKDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 247 >gi|305680308|ref|ZP_07403116.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|305659839|gb|EFM49338.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 212 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G T L + + +LT RE L+L Sbjct: 104 AGALGYLLKDAPPEELLAAVRSAAEGDSTLSPTVANRLMTRVRTPRTSLTPRELEVLKLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI L LS TV ++L KL +R A+A A + G + Sbjct: 164 ASGSSNREIGRALLLSEATVKSHLVHIYDKLGVRSRTSAVAAARKQGVL 212 >gi|326331408|ref|ZP_08197698.1| two component transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325950664|gb|EGD42714.1| two component transcriptional regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 222 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L +G+++ +E + L + + + A G +VI +F + + R +L Sbjct: 102 LRLGASGFLLKDAEPVALLDAIRVVADGGSLLAPTVTRRVIEEFGSSRRAANPHPRLGDL 161 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE + G ++ EIA +L +S TV ++ A VKL A +R Q + AI G Sbjct: 162 TEREREMVAWVATGRSNAEIAAELVVSPDTVRTHVSRAMVKLHARDRAQLVVFAIESGL 220 >gi|294631904|ref|ZP_06710464.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292835237|gb|EFF93586.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 203 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L NGY++ + LA+ V G Q + D +A +TERET L+ Sbjct: 95 LTAQVNGYLLKDAPPHELADAVRRVVAG---QRVIDPQLALDVWGTAENPMTERETEVLR 151 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG + EIA++L L+ TV YL SA KL A NR+ AI A G++ Sbjct: 152 LAADGLEAGEIAKQLRLARGTVRNYLTSAVTKLLARNRVDAIRIAREAGWL 202 >gi|218896470|ref|YP_002444881.1| DNA-binding response regulator [Bacillus cereus G9842] gi|218543325|gb|ACK95719.1| DNA-binding response regulator [Bacillus cereus G9842] Length = 210 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK LTERE+ Sbjct: 96 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHEELTERESE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 156 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 206 >gi|218232786|ref|YP_002370188.1| DNA-binding response regulator [Bacillus cereus B4264] gi|218160743|gb|ACK60735.1| DNA-binding response regulator [Bacillus cereus B4264] Length = 215 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K + Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|75760127|ref|ZP_00740188.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218900537|ref|YP_002448948.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228903890|ref|ZP_04068005.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 4222] gi|228968544|ref|ZP_04129531.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar sotto str. T04001] gi|74492399|gb|EAO55554.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218542579|gb|ACK94973.1| DNA-binding response regulator [Bacillus cereus G9842] gi|228791148|gb|EEM38763.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar sotto str. T04001] gi|228855799|gb|EEN00344.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 4222] Length = 215 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K + Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANTLLSQTLPVEEKEEEPSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|254444586|ref|ZP_05058062.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198258894|gb|EDY83202.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 200 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 10/140 (7%) Query: 105 SVRLEGGLLPFAGIAFPVR----LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------ 154 E L F+ P L +G+V T+ N + I A G + Sbjct: 55 RQMPETRFLVFSAYQNPSIVKDMLEAGAHGFVEKTANLREFINGLGIVAEGGTFFGPNVA 114 Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++I + + LTERE LQ+ +G++++EIA+KLGLSV TV+ + + Sbjct: 115 ELIRSVVANPTNVQRSKDTLTEREREVLQMIAEGHSTKEIAKKLGLSVKTVDNHRTNMMR 174 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLD N A++ G I Sbjct: 175 KLDLHNVASITRYAMQNGLI 194 >gi|206970021|ref|ZP_03230974.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|229193664|ref|ZP_04320607.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 10876] gi|206734598|gb|EDZ51767.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|228589817|gb|EEK47693.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 10876] Length = 215 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K + Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|73662256|ref|YP_301037.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494771|dbj|BAE18092.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 207 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + G + +E K+ A L++RE+ L Sbjct: 98 GADGYEMKDVEPEQLIKTIKHVLAGEKIIHPQAQHVIETVSKKPHYANKLSKRESEVLTE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIAE L +S T+ ++ KL +R QA A++ I Sbjct: 158 MAKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVTDRTQAAIYAMQNNLI 207 >gi|291302714|ref|YP_003513992.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571934|gb|ADD44899.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 218 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L +GY++ +E L + V + A G +VI F + + LT+ Sbjct: 96 LRAGASGYLVKDAEPHELLHGVRVVARGDGLLSASVTRRVIESFADTTATDAPDIDGLTD 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RET L L G ++ EIA +L +S T ++ KL A +R Q + A G + Sbjct: 156 RETEVLGLVARGLSNAEIAGRLSMSPATAKTHVNRTMTKLGARDRAQLVIFAYETGLVV 214 >gi|89896875|ref|YP_520362.1| hypothetical protein DSY4129 [Desulfitobacterium hafniense Y51] gi|89336323|dbj|BAE85918.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 215 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARNLTE 176 L +GYV+ + L + A G Y ++ K + +A NLTE Sbjct: 96 LKSGASGYVLKQAADTELLQAIRDVARGEIYLDSSLAQNLVKSMYSPRKDNNRSASNLTE 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+ GYT++EI E L +SV TV + K+ R + AI GYI Sbjct: 156 REKEVLRYIALGYTNKEIGESLSVSVKTVETHKARIMEKIQCHKRSDLVRYAIEQGYIS 214 >gi|17232127|ref|NP_488675.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17133772|dbj|BAB76334.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 219 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 10/115 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN------- 173 L GY++ + LA + G ++ L F+ + Sbjct: 94 LQHGAMGYLLKDTPSEELAVAIRAVEKGYTQLGPGIVKKLLVQFQSTPNHTPPAPTHLAD 153 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+L G + EIA++L +S TV ++ + +L+ +R QA A Sbjct: 154 LTPREKEVLRLIAAGANNREIAQQLYISEGTVKNHVTNILNRLNLRDRTQAAIIA 208 >gi|288922222|ref|ZP_06416420.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288346413|gb|EFC80744.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 239 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 12/120 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK-----KRSSAARN 173 GY++ + +A+ V G +++ +F + + + + A + Sbjct: 116 AGAVGYLLKSIPPHEVADAVRAVHSGQSLISPSMASKLMVEFATMARGGGEDRPRAHAPH 175 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L +G + EIA KL +S +TV ++ + KL +R++A+ A+R G Sbjct: 176 LTARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 235 >gi|320011249|gb|ADW06099.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 230 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 13/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR------N 173 GY++ ++ L + V A G V+ ++ L + AA Sbjct: 108 GATGYLLKSASTQELTDAVRATAAGDPVFTPGLAGLVLGEYRRLASDPAPAAPDQPKVPQ 167 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 168 LTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEAGL 227 >gi|18250686|emb|CAD20930.1| RaiR protein [Rhizobium leguminosarum] Length = 265 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 69/190 (36%), Gaps = 15/190 (7%) Query: 58 DLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 L P ++ Y D + G LP+ W + + ++ + Sbjct: 78 PLLMLTYPPEWVKQYLERDYFSIDPVVRLGRRGFLPVEWSASKWDS--GQAYGFFKEAMA 135 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSE-----FLMLANEVIIEAHGACYQVITDFLELFK 165 + G+ PVR + TS + + + + + + + L Sbjct: 136 FGVGRQGVTLPVRGPHGERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRAMVLSG 195 Query: 166 KRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R + L+ RE CL++ +G +++I +L +SV V YL SA KL +A Sbjct: 196 MRKITDFPQLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEA 255 Query: 225 IAKAIRFGYI 234 +AKA I Sbjct: 256 VAKATALELI 265 >gi|126173479|ref|YP_001049628.1| two component LuxR family transcriptional regulator [Shewanella baltica OS155] gi|125996684|gb|ABN60759.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS155] Length = 216 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTER 177 L NG+++ L + + A G + ++ + + + + L+ER Sbjct: 100 LQAGANGFLLKDVSLDKLLHAIETVAKGGYLIEPSVLKQMSEPKPAPSVGVTRNELLSER 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G++++EIA + L+ TV ++ + KLD +R QA+ K ++ I Sbjct: 160 EREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLALI 216 >gi|219847289|ref|YP_002461722.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219541548|gb|ACL23286.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 217 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF---KKRSSAARNLTERET 179 Y++ LA+ + G V ++ F + LT RE Sbjct: 98 AGAISYLLKDISPEELAHAIRAARRGEAVLHPAVAAKLMQEFNTPRPNEPPVEQLTPREM 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G +++EIA+ L +S TV ++ + KL +R Q A+R + Sbjct: 158 DVLRLVAKGMSNKEIADTLIVSEKTVKTHISNILSKLHLADRTQVAIYALRKRLV 212 >gi|302551827|ref|ZP_07304169.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302469445|gb|EFL32538.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 270 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 148 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 207 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 208 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 267 >gi|291453746|ref|ZP_06593136.1| two-component system response regulator [Streptomyces albus J1074] gi|291356695|gb|EFE83597.1| two-component system response regulator [Streptomyces albus J1074] Length = 267 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 145 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 204 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 205 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 264 >gi|322412404|gb|EFY03312.1| Two-component response regulator yvqC [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 213 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV GY++ TS + N + + G A + ++ + LT RE Sbjct: 94 PVIDA-GAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTARE 152 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 153 YDILYLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLV 208 >gi|296388005|ref|ZP_06877480.1| transcriptional regulator RhlR [Pseudomonas aeruginosa PAb1] gi|313108838|ref|ZP_07794823.1| acylhomoserine lactone dependent transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310881325|gb|EFQ39919.1| acylhomoserine lactone dependent transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 234 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 72/231 (31%), Gaps = 24/231 (10%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-- 73 + +++ ++ F Y P + G P +E Y Sbjct: 16 DSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTR-------PKTEVHGTYPKAWLERYQMQ 68 Query: 74 -----DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + ++W + ++ G P+R + Sbjct: 69 NYGAVDPAILNGLRSSEMVVWSD-----SLFDQSRMLWNEARDWGLCVGATLPIRAPNNL 123 Query: 129 NGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQ 183 + + +++ E+ + + +L S L+ RE LQ Sbjct: 124 LSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQ 183 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +S EIA L +S TVN + + K DA N+ A A A G I Sbjct: 184 WTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKTLAAAYAAALGLI 234 >gi|239940608|ref|ZP_04692545.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239987090|ref|ZP_04707754.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 233 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 13/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK------RSSAARN 173 GY++ ++ L + V A G V+ ++ L A Sbjct: 111 GATGYLLKSASTQELTDAVRSTAAGDPVFTPGLAGLVLGEYRRLASDPAPVASDEPKAPQ 170 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 171 LTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 230 >gi|160874438|ref|YP_001553754.1| two component LuxR family transcriptional regulator [Shewanella baltica OS195] gi|160859960|gb|ABX48494.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|315266674|gb|ADT93527.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 216 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTER 177 L NG+++ L + + A G + ++ + + + + L+ER Sbjct: 100 LQAGANGFLLKDVSLDKLLHAIETVAKGGYLIEPSVLKQMSEPKPAPSVGETRNELLSER 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G++++EIA + L+ TV ++ + KLD +R QA+ K ++ I Sbjct: 160 EREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLALI 216 >gi|326776667|ref|ZP_08235932.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326657000|gb|EGE41846.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 225 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN------- 173 L +G+++ + LA+ V + A G + + F + + A R Sbjct: 99 LRAGASGFLLKDASADELAHAVRVVAAGDALLSPNITKRLIVEFSRTAGAPRPPLKARVK 158 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EI+ +L ++ TV ++G VKL +R QA A G Sbjct: 159 ELTERETEVLTLIAGGLSNAEISRQLIVAEQTVKTHVGRILVKLGVRDRTQAAVFAYESG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|182436043|ref|YP_001823762.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464559|dbj|BAG19079.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 225 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN------- 173 L +G+++ + LA+ V + A G + + F + + A R Sbjct: 99 LRAGASGFLLKDASADELAHAVRVVAAGDALLSPNITKRLIVEFSRTAGAPRPPLKARVG 158 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EI+ +L ++ TV ++G VKL +R QA A G Sbjct: 159 ELTERETEVLTLIAGGLSNAEISRQLIVAEQTVKTHVGRILVKLGVRDRTQAAVFAYESG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|170783491|ref|YP_001741984.1| putative DNA binding response regulator [Arthrobacter sp. AK-1] gi|150034978|gb|ABR66989.1| putative DNA binding response regulator [Arthrobacter sp. AK-1] Length = 212 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 9/116 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL------ELFKKRSSAARN-LTERE 178 G++ + F + + V+ GA +I F EL ++ +A R L+ RE Sbjct: 98 HGARGFLEKAASFSEITDAVLQI--GAGGTIIAPFAQDVLARELRTRQDTAERPVLSPRE 155 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+LA DGY+ ++IA +L +S+ TV +L KLD +R A+A+AIR G++ Sbjct: 156 IEILRLAADGYSGQKIASELHISLATVKTHLQHIYDKLDVSDRASAVAQAIRRGFL 211 >gi|15675498|ref|NP_269672.1| putative two-component response regulator [Streptococcus pyogenes M1 GAS] gi|71911145|ref|YP_282695.1| two-component response regulator [Streptococcus pyogenes MGAS5005] gi|13622694|gb|AAK34393.1| putative two-component response regulator [Streptococcus pyogenes M1 GAS] gi|71853927|gb|AAZ51950.1| two-component response regulator [Streptococcus pyogenes MGAS5005] Length = 213 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV GY++ TS + N + + G A + ++ + LT RE Sbjct: 94 PVIDA-GAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTARE 152 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 153 YDILHLLAKGYDNQTIADELFISLKTVKTHVSNILAKLEVGDRTQAVVYAFRHHLV 208 >gi|152968160|ref|YP_001363944.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151362677|gb|ABS05680.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 14/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS------- 169 L G+++ + L V A G +++ F E ++ + Sbjct: 99 LRAGAAGFLLKDARPAELVAAVRTVAGGEQLLAPAVTRRLVGRFAERIREVAPGRGGAGA 158 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L L G ++ EIA +L +S TV Y+ KL +R+QA+ A Sbjct: 159 ELAGLTPREVEVLGLIARGLSNAEIAAELVISHETVKTYVSRILAKLGLRDRVQAVVLAY 218 Query: 230 RFGYIC 235 R G + Sbjct: 219 RTGLVA 224 >gi|315502094|ref|YP_004080981.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315408713|gb|ADU06830.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 216 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L G+++ + + + + A G A Q++ + R AAR LTE Sbjct: 96 LRAGAAGFLLKRARPAEVVQAIRVVAAGDSLLFPAAIRQLVDTYGRRDGDRLRAAR-LTE 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G ++ EIA +L + V TV ++G+ KL +R QA+ A G++ Sbjct: 155 REAEVLRLMAAGLSNPEIAARLVVGVETVKTHVGNVLAKLGVRDRTQAVVAAYESGFV 212 >gi|269127167|ref|YP_003300537.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312125|gb|ACY98499.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 201 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G++ + LA V G Y D ++ LTERE L+ Sbjct: 94 MAAGVRGFIAKDAPAEDLAAAVRKVHAGGRYL---DAELAASAMAAGDNPLTERERQILR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G G + IAE L LS TV YL SA KLDA NR+ A+ A G+I Sbjct: 151 LIGRGMEAPGIAEALHLSQGTVRNYLSSAMTKLDAPNRLAAVRTAEEMGWI 201 >gi|254410364|ref|ZP_05024143.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196182570|gb|EDX77555.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 212 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 7/112 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARNLTE 176 L + +GY++ + LA + G +++T S+A LT Sbjct: 94 LHYGASGYLLKDTPPDELAQAIRAVHKGYTQLGPGIGQKIMTQIPASVSNSSTAWDELTP 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 RE L+L G + EIA+ L +S TV ++ + +L+ +R QA A Sbjct: 154 REQEILRLIATGANNREIAQTLYISQKTVKNHITNILSRLNLRDRTQAAIWA 205 >gi|254414589|ref|ZP_05028354.1| Sigma-70, region 4 family [Microcoleus chthonoplastes PCC 7420] gi|196178437|gb|EDX73436.1| Sigma-70, region 4 family [Microcoleus chthonoplastes PCC 7420] Length = 217 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 12/122 (9%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------------RSSAAR 172 +GY + E +L + A GA + T E+ S+A Sbjct: 94 AAGASGYCLKGIEAEVLILALRSVAAGASWWDKTSTNEIRAAVGEQTPEVAQSTEESSAN 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G +++EI E L ++ TV ++ + KLD +R QA AI+ G Sbjct: 154 PLTQREQEILALIAAGKSNQEIGELLHIATGTVRVHVHAILQKLDVRDRTQAAVLAIQKG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|310640405|ref|YP_003945163.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309245355|gb|ADO54922.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 199 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA+ + G EL + LTERE + L L Sbjct: 94 AGTHGYLLKDSPSEELASSIRSIMAGRRIYA----PELVDDAYAEVNPLTEREKTVLALI 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA +L L+ TV Y+ KL NRI+AI + G+ Sbjct: 150 ADGKNTKEIAGELFLTTGTVRNYISVILDKLGVSNRIEAITRFNEKGW 197 >gi|21221817|ref|NP_627596.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|256787004|ref|ZP_05525435.1| two component system response regulator [Streptomyces lividans TK24] gi|289770897|ref|ZP_06530275.1| two component system response regulator [Streptomyces lividans TK24] gi|4585835|emb|CAB40929.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] gi|289701096|gb|EFD68525.1| two component system response regulator [Streptomyces lividans TK24] Length = 224 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELF-----KKRSSAA 171 L +G+++ L + + A +++ F + + R Sbjct: 95 LKAGASGFMLKDVPPGELLAAIRSVHSGDAVVAPSTTRRLLDRFAPMLPATGQEPRQKEL 154 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 QRLTEREREVMVLVAQGMSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|228907170|ref|ZP_04071032.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL 200] gi|228852502|gb|EEM97294.1| hypothetical protein bthur0013_13410 [Bacillus thuringiensis IBL 200] Length = 199 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS+ +A+ V G +V + KK +LTERE Sbjct: 85 AGATSYLLKTSKASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHDDLTEREFE 144 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 145 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 195 >gi|55823331|ref|YP_141772.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|116628130|ref|YP_820749.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|55739316|gb|AAV62957.1| response regulator (homolog to RR03 Spn) [Streptococcus thermophilus CNRZ1066] gi|116101407|gb|ABJ66553.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] gi|312278734|gb|ADQ63391.1| Two-component response transcriptional regulator (CheY-like receiver and HTH DNA-binding domains), putative [Streptococcus thermophilus ND03] Length = 214 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + G A + + ++ + +LT RE L Sbjct: 99 AGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPNLHDDLTARERDILA 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L GY ++ IA +L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 159 LLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVS 210 >gi|302035966|ref|YP_003796288.1| putative LuxR family transcriptional regulator [Candidatus Nitrospira defluvii] gi|300604030|emb|CBK40362.1| putative Transcriptional regulator, LuxR family [Candidatus Nitrospira defluvii] Length = 265 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 66/182 (36%), Gaps = 14/182 (7%) Query: 57 YDLDSGDIPNILIETYG------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 L P + Y D ++ + + S E E S++L+ Sbjct: 59 PALGHSTYPREFCQLYMGQGLAADPAVYRLITSGQSVT-SSADEPAFSEPKDITSLKLDF 117 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----K 165 G+ ++ VR Y F++ +++ + ++ + Sbjct: 118 GIKTC--LSAGVRGEHGTCSYFAFSNFDAKQTDKLRLLLDILTPHFHLSYMRCHSAWNPE 175 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + + L++RE L+ G T+ EI+ L +S++TV +L + K+ NR AI Sbjct: 176 RPAPPPTLLSKREEEILRWVAAGKTNWEISVILKVSLNTVKFHLKNVFQKIGVENRWSAI 235 Query: 226 AK 227 A Sbjct: 236 AY 237 >gi|288554158|ref|YP_003426093.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288545318|gb|ADC49201.1| two-component response regulator of extracellular degradative enzyme [Bacillus pseudofirmus OF4] Length = 233 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 21/132 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L +GY++ + L V + A G Y +I ++ L + + Sbjct: 99 LKTGASGYLLKEMDAGALIEAVKVVASGGSYIHPKVTHNLIKEYRRLATEDDKYEESIGF 158 Query: 174 -----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LT RE LQL DG ++ I E L +S TV ++ + K+ +R Sbjct: 159 REVEYRKPLHILTRRECEVLQLMTDGQSNRAIGESLYISEKTVKNHVSNILQKMSVNDRT 218 Query: 223 QAIAKAIRFGYI 234 QA+ +AI+ GY+ Sbjct: 219 QAVVEAIKKGYV 230 >gi|302865544|ref|YP_003834181.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302568403|gb|ADL44605.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 216 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L G+++ + + + + A G A Q++ + R AAR LTE Sbjct: 96 LRAGAAGFLLKRARPAEVVQAIRVVAAGDSLLFPAAIRQLVDTYGRRDGDRLRAAR-LTE 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G ++ EIA +L + V TV ++G+ KL +R QA+ A G++ Sbjct: 155 REAEVLRLMAAGLSNPEIAARLVVGVETVKTHVGNVLAKLGVRDRTQAVVAAYESGFV 212 >gi|224476942|ref|YP_002634548.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] gi|222421549|emb|CAL28363.1| putative response regulator [Staphylococcus carnosus subsp. carnosus TM300] Length = 205 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A + H +V+ +R+ LT+RE Sbjct: 91 LDAGVDSYILKTTSASDIAEAIRKTQHNESVFEAEVLVKMRNRMNQRAELYEMLTDREME 150 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 151 ILLLIANGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHDLI 204 >gi|217974227|ref|YP_002358978.1| LuxR family two component transcriptional regulator [Shewanella baltica OS223] gi|217499362|gb|ACK47555.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS223] Length = 216 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------LTE 176 L NG+++ L + + A G Y + L+ + A L+E Sbjct: 100 LQAGANGFLLKDVSLDKLLHAIETVAKGG-YLIEPSVLKQMSEPKPAPNVGVTRNELLSE 158 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G++++EIA + L+ TV ++ + KLD +R QA+ K ++ I Sbjct: 159 REREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLALI 216 >gi|325283032|ref|YP_004255573.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] gi|324314841|gb|ADY25956.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] Length = 219 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L GY++ + L V A G +V+ F +L+ Sbjct: 97 LEAGAAGYLLKEASEDELLRAVRAVAAGESVLHPSIARKVMARFSAQAPAEMDLTEDLSP 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ A G +++EIA LG+S TV +LG+ KL+ +R +A+ IR G++ Sbjct: 157 RELEVLRAAARGGSNKEIARALGISPRTVQVHLGNVFSKLNVGSRTEAVLAGIRRGWV 214 >gi|306841076|ref|ZP_07473798.1| regulatory protein LuxR [Brucella sp. BO2] gi|306846307|ref|ZP_07478868.1| regulatory protein LuxR [Brucella sp. BO1] gi|306273302|gb|EFM55171.1| regulatory protein LuxR [Brucella sp. BO1] gi|306288886|gb|EFM60191.1| regulatory protein LuxR [Brucella sp. BO2] Length = 258 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 71/186 (38%), Gaps = 14/186 (7%) Query: 63 DIPNILIETYG-------DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 +P + Y D ++ + I ++ + + +L E Sbjct: 64 TLPATWVARYSSKNYFAVDPVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHDAEKH 123 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRS 168 L IA R G +FT E + + +I + K + Sbjct: 124 GLGNLFIAVSARNPKGVAGCTVFTFEVDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDAN 183 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A+A A Sbjct: 184 SVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVATA 243 Query: 229 IRFGYI 234 + G I Sbjct: 244 LSLGII 249 >gi|229176087|ref|ZP_04303581.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3] gi|228607431|gb|EEK64759.1| Two component transcriptional regulator, LuxR [Bacillus cereus MM3] Length = 215 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K + Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANTLLSQTLPVEEKEEEPSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|167006408|ref|YP_001661631.1| putative two-component system regulator [Streptomyces sp. HK1] gi|166162490|gb|ABY83611.1| putative two-component system regulator [Streptomyces sp. HK1] Length = 220 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L G+++ + LA V + A G ++I +F L + + R Sbjct: 94 LRAGACGFLLKDASADQLAEAVRVIAAGDALLAPGITRRLIAEFSRLDDRPRAPLRQRIE 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET + L G ++ EIA++L L+ TV ++G +KL +R QA A G Sbjct: 154 DLTERETEVVALIAHGLSNAEIAQRLVLAEQTVKTHVGRILLKLGLRDRTQAAVFAYESG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|299538340|ref|ZP_07051623.1| two-component response regulator [Lysinibacillus fusiformis ZC1] gi|298725927|gb|EFI66519.1| two-component response regulator [Lysinibacillus fusiformis ZC1] Length = 210 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA--RNLTERE 178 L Y++ TS +A + G +V + + + +S LTERE Sbjct: 94 LEAGAVSYILKTSNAKQIAEAIRKTMGGETVLEPEVTSKMMHRMRHGNSTPLYEQLTERE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G ++EIA++L +++ TV ++ + KL+ +R QA+ A + G Sbjct: 154 MEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNGL 208 >gi|255324096|ref|ZP_05365220.1| response regulator, two-component system [Corynebacterium tuberculostearicum SK141] gi|255298797|gb|EET78090.1| response regulator, two-component system [Corynebacterium tuberculostearicum SK141] Length = 212 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G L + + +LT RE LQL Sbjct: 104 AGAVGYLLKDAPPHELLAAVRSTAEGDSALSPIVADRLMTRVRTPRTSLTPRELEVLQLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +I + L LS TV ++L KL +R A+A A G + Sbjct: 164 AAGASNRQIGQDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 212 >gi|307330474|ref|ZP_07609617.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883899|gb|EFN14942.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 13/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK------RSSAARN 173 GY++ ++ L + V A G V+ ++ L + A Sbjct: 104 GATGYLLKSASTEELLDAVRRTAAGDPVFTPGLAGLVLGEYRRLAGEPAPTAADQPAVPQ 163 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 164 LTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 223 >gi|282865219|ref|ZP_06274272.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560142|gb|EFB65691.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 250 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ ++ + A G + + L FK +R A L Sbjct: 128 AGATGYLLKEISTDEVSTAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 187 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 188 TERELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 247 >gi|145295913|ref|YP_001138734.1| hypothetical protein cgR_1838 [Corynebacterium glutamicum R] gi|140845833|dbj|BAF54832.1| hypothetical protein [Corynebacterium glutamicum R] Length = 210 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 49/110 (44%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ S L V A G ++ + ++ L+ RE + L Sbjct: 101 SAGAVGYLLKDSSPEDLIAGVRDAARGESVLSKQVASKIMGRMNNPMTALSAREIEVVSL 160 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI +KL L+ TV +++G KLD +R A+A+A + G I Sbjct: 161 VAQGQSNREIGKKLFLTEATVKSHMGHVFNKLDVTSRTAAVAEARQRGII 210 >gi|148654624|ref|YP_001274829.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148566734|gb|ABQ88879.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 208 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 52/114 (45%), Gaps = 5/114 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L YV S+ L V A G ++ L+ RSS A LTERE Sbjct: 97 LRAGAITYVEKDSQPEQLLEAVRGAAQGKAIFEPALMQRILQAQTMRSSDA--LTEREGE 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G T+ EIA +L + TV ++ S KL +R QA A+R G++ Sbjct: 155 VLKLLAEGLTNAEIAARLSVGEETVKTHVASILRKLGLAHRTQAAIYALRHGWV 208 >gi|103488066|ref|YP_617627.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98978143|gb|ABF54294.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis RB2256] Length = 250 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 75/233 (32%), Gaps = 2/233 (0%) Query: 5 TLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDI 64 L G + + + + F + ++ + +H+Y D+ Sbjct: 7 ELLGDSILTASSIDHLHEALTRATRDMGFDRFALSLEIGCGADSSTSLLIHDYPASWADV 66 Query: 65 PNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 D +L W++I + + + + G P L Sbjct: 67 YIGFNLAASDPVRRAAERSVLGFGWRNILDLVPMTEIEKTTFETGRRHGLADGFTVPRHL 126 Query: 125 GFHKNGYVIF-TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCL 182 G F T + + ++I A I +L S + + LT+R+ C+ Sbjct: 127 PGDVTGSCSFVTGLGKSIPHAMLIVAEMLGAMAIASARQLSGWTSRSVQPRLTDRQRDCV 186 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 A G T EI+ L +S TV +L A + + R I A+ G I Sbjct: 187 LWAARGKTDWEISRILDISHETVIQHLKDARERYETHKRASLILYALYDGLIS 239 >gi|47569107|ref|ZP_00239795.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|47554178|gb|EAL12541.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] Length = 132 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK LTERE+ Sbjct: 18 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHEELTERESE 77 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 78 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 128 >gi|322516397|ref|ZP_08069322.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322125130|gb|EFX96523.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 214 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 2/112 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + G A + + ++ +LT RE L Sbjct: 99 AGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPDLHDDLTARERDILA 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L GY ++ IA +L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 159 LLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVS 210 >gi|228900120|ref|ZP_04064353.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL 4222] gi|228859526|gb|EEN03953.1| hypothetical protein bthur0014_13270 [Bacillus thuringiensis IBL 4222] Length = 199 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK LTERE+ Sbjct: 85 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHEELTERESE 144 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 145 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 195 >gi|68536238|ref|YP_250943.1| two-component system response regulator TcsR3 [Corynebacterium jeikeium K411] gi|260578938|ref|ZP_05846841.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] gi|68263837|emb|CAI37325.1| two-component system response regulator TcsR3 [Corynebacterium jeikeium K411] gi|258602912|gb|EEW16186.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] Length = 216 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 47/110 (42%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ LA + A G +L + ++ +LT RE L L Sbjct: 106 SAGAVGYLLKDCAPDELAEGIRQAARGQTVMNKNIMGKLRGRLANPFESLTNREQEVLVL 165 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G ++ IA+ L L+ TV +++ KL+ NR A+A A G I Sbjct: 166 ASQGKSNRAIAKDLVLTEATVKSHMAHVFSKLNVKNRTAAVAVARERGII 215 >gi|163848766|ref|YP_001636810.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526715|ref|YP_002571186.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163670055|gb|ABY36421.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222450594|gb|ACM54860.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 218 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF---KKRSSAARNLTERET 179 Y++ LA+ + G V ++ F + + LT RE Sbjct: 98 AGAISYLLKDISPEDLAHAIRAACRGEAVLHPDVAAKLMQEFNTPRPNEAPVEQLTPREM 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G +++EIAE L +S TV ++ + KL +R Q A+R + Sbjct: 158 DVLRLVAKGMSNKEIAETLIVSEKTVKTHISNILSKLHLADRTQVAIYALRKRLV 212 >gi|297200099|ref|ZP_06917496.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|297147573|gb|EDY61231.2| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 269 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 147 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 206 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 207 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 266 >gi|239941686|ref|ZP_04693623.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988145|ref|ZP_04708809.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445128|ref|ZP_06584518.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348075|gb|EFE74979.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 251 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 129 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 188 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 189 TERELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 248 >gi|226366081|ref|YP_002783864.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244571|dbj|BAH54919.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 222 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 + G+++ +E L V + A G +++ +F K+ ++R +L Sbjct: 97 MRAGATGFLVKHTEPAELVRAVRVVADGDALLSPSVTRKLVAEFATHAKRPPHSSRLDDL 156 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE + L +G T+ EI +L LS T ++ +KL A +R Q + A +G + Sbjct: 157 TDREREVMTLIAEGLTNAEIGSRLFLSPATARTHVSRILLKLGARDRTQLVVMAYEWGLV 216 >gi|254393192|ref|ZP_05008347.1| two-component system regulator [Streptomyces clavuligerus ATCC 27064] gi|294811637|ref|ZP_06770280.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440178|ref|ZP_08214912.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706834|gb|EDY52646.1| two-component system regulator [Streptomyces clavuligerus ATCC 27064] gi|294324236|gb|EFG05879.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 223 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR---- 172 L +G+++ + LA+ V + A G ++I +F L + R Sbjct: 97 LRAGASGFLLKDASAAELAHAVRVVAAGDALLAPAVTKRLIAEFSRLTGAPRAPLRERVG 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA L ++ TV ++G VKL +R QA A G Sbjct: 157 TLTERETEVLALIAQGLSNAEIATALVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|38234803|ref|NP_940570.1| putative two component system response regulator protein [Corynebacterium diphtheriae NCTC 13129] gi|38201067|emb|CAE50791.1| Putative two component system response regulator protein [Corynebacterium diphtheriae] Length = 212 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G T L + + +LT RE L+L Sbjct: 104 AGALGYMLKDAPPEELLAAVRSAAEGDTALSPTVANRLMSRVRAPRNSLTPRELEVLKLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +I +L LS TV ++L KL +R A+A A G + Sbjct: 164 AGGSSNRDIGRRLLLSEATVKSHLVHIYDKLGVRSRTSAVAIAREQGVL 212 >gi|297537928|ref|YP_003673697.1| LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257275|gb|ADI29120.1| transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 247 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 45/90 (50%) Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 ++ H A ++ + + ++ A +T+RE+ LQ G T+ EI+ L +S T Sbjct: 154 IMPHLHCALVRITSSRSNVVINTAAIANIMTKRESEILQWLHMGKTNWEISSILDISQLT 213 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++ + KLD NR QA KA + G I Sbjct: 214 VKNHVQNILRKLDVQNRSQAAVKAAKLGLI 243 >gi|229029217|ref|ZP_04185310.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271] gi|228732125|gb|EEL83014.1| hypothetical protein bcere0028_13140 [Bacillus cereus AH1271] Length = 204 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK +LTERE+ Sbjct: 90 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHEDLTERESE 149 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 150 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 200 >gi|119492591|ref|ZP_01623809.1| two-component response regulator [Lyngbya sp. PCC 8106] gi|119453060|gb|EAW34230.1| two-component response regulator [Lyngbya sp. PCC 8106] Length = 211 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARNLTE 176 L + Y I + L + + GA Y VI + + NL+ Sbjct: 93 LSSGADAYCIKGASVDRLRAAITAASEGATYLDPQVAKCVINHLQPPTPQSDLKSTNLSP 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L +G T+ +IAE+L LS +T+ ++ KL +R+QA A+R G + Sbjct: 153 REFEVLKLMVEGKTNVKIAEELYLSPNTIKTHVRGIMNKLSVDDRVQAAVTALRLGLVT 211 >gi|219849240|ref|YP_002463673.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543499|gb|ACL25237.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 247 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------------ACYQVITDFLELFKKRSSA 170 L Y + LA+ + A G ++++ F L + ++ A Sbjct: 104 LRAGAAAYRSKDIKPAALADIIRRVARGEYVINDVLMEEPRIAGRILSQFRNLPEVQTLA 163 Query: 171 AR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ERE L+ G +++EIA+ LG+S TV ++ S KL +R Q Sbjct: 164 DDLGIQIFTPLSEREIEVLERIAAGSSNKEIADALGISTQTVKNHISSILRKLSLNDRTQ 223 Query: 224 AIAKAIRFGYI 234 A+ A+R G+I Sbjct: 224 AVIFALRRGWI 234 >gi|29831611|ref|NP_826245.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608727|dbj|BAC72780.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 248 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 126 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 185 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 186 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 245 >gi|32472133|ref|NP_865127.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH 1] gi|32397505|emb|CAD72811.1| nitrate/nitrite regulatory protein narP [Rhodopirellula baltica SH 1] gi|327539236|gb|EGF25859.1| two-component system response regulator [Rhodopirellula baltica WH47] Length = 210 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/133 (24%), Positives = 56/133 (42%), Gaps = 10/133 (7%) Query: 112 LLPFAGIAFPVRLGF----HKNGYVIFTSEFLMLANEVIIEAHGAC------YQVITDFL 161 +L F+G P + GY++ T+ L + + G + +T L Sbjct: 78 ILLFSGYDNPTYVARAVALGACGYILKTAPVSRLIEALNLAFDGQQSWTREELRRVTGAL 137 Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LT+RE+ L+ G T++EIA+ LG+S TV ++ KL +R Sbjct: 138 ATPRMNQDIDVPLTQRESEVLRQMALGLTNKEIAKMLGISYETVKEHVQHILRKLGVSDR 197 Query: 222 IQAIAKAIRFGYI 234 QA A+R + Sbjct: 198 TQAAVWAVRKNLV 210 >gi|170689229|ref|ZP_02880425.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170666784|gb|EDT17551.1| DNA-binding response regulator [Bacillus anthracis str. A0465] Length = 210 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK LTERE+ Sbjct: 96 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHEELTERESE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 156 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 206 >gi|111023025|ref|YP_705997.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110822555|gb|ABG97839.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 228 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCL 182 GYV+ + L + + G + + + +++ LTERE L Sbjct: 117 AGARGYVVKDVDTTELVRAIRAVSRGESAFDSRSASAVIRSLNGQTTPRDGLTERELEVL 176 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QL G ++ +I E+L +S TV ++ + KLD R +A+ +A + G I Sbjct: 177 QLLAKGLSNAKIGERLFISATTVKFHVSNIMRKLDVGRRAEAVYEAGKLGLI 228 >gi|282862196|ref|ZP_06271259.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563221|gb|EFB68760.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 233 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 13/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA------RN 173 GY++ ++ L + V A G V+ ++ L + AA Sbjct: 111 GATGYLLKSASTQELTDAVRATAAGDPVFTPGLAGLVLGEYRRLASDPAPAASDEPKAPQ 170 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 171 LTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIETGL 230 >gi|52143908|ref|YP_082920.1| response regulator [Bacillus cereus E33L] gi|51977377|gb|AAU18927.1| response regulator [Bacillus cereus E33L] Length = 210 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK LTERE+ Sbjct: 96 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHEELTERESE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 156 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 206 >gi|312880287|ref|ZP_07740087.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] gi|310783578|gb|EFQ23976.1| two component transcriptional regulator, LuxR family [Aminomonas paucivorans DSM 12260] Length = 226 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 8/116 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTER 177 +GYV+ S + L + V G Y +++T F ++R +LT R Sbjct: 97 SVGIDGYVLKASGLVELLSAVRSVTRGENYVDPKVAGKLLTSFHRRREERD-LLVDLTPR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L G+++ EIA K+ LS TV ++ KL+ +R QA A + G Sbjct: 156 EREVLYWLSQGFSNAEIALKMVLSEKTVKNHVSHVLRKLELNDRTQAAVLAWKMGL 211 >gi|269960068|ref|ZP_06174445.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835367|gb|EEZ89449.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 225 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 33/66 (50%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L G ++ EI+ L +S TV +L + KLD NR A++K Sbjct: 157 PAPESQLTTRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLDVHNRTHAVSK 216 Query: 228 AIRFGY 233 AI G+ Sbjct: 217 AIELGW 222 >gi|254392737|ref|ZP_05007910.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294811849|ref|ZP_06770492.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440412|ref|ZP_08215146.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706397|gb|EDY52209.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324448|gb|EFG06091.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 214 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERE 178 L +GYV + LA + G L + LTERE Sbjct: 98 LRAGASGYVYKDIDPEALAGAIRSVHAGHVLLQPEVAGALLAQEEQGGGTGRGSTLTERE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 158 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 212 >gi|260905221|ref|ZP_05913543.1| two component system response regulator [Brevibacterium linens BL2] Length = 260 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKK-----RSSAARNLTER 177 +G+++ + LA V + A G V +E F + A +LT+R Sbjct: 138 AGASGFLLKDAPPNELAEAVRVVASGDGLLAPSVTRRVIEHFAAGPQTSNAEALPDLTDR 197 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L L G T+ EIA L ++V TV ++ KLD +R QA+ A G + Sbjct: 198 EREILVLVARGQTNTEIAATLFIAVQTVKTHVSRILYKLDIRDRAQAVIAAYESGLVV 255 >gi|220932804|ref|YP_002509712.1| two component transcriptional regulator, LuxR family [Halothermothrix orenii H 168] gi|219994114|gb|ACL70717.1| two component transcriptional regulator, LuxR family [Halothermothrix orenii H 168] Length = 209 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 3/113 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSC 181 YV+ S L + G V ++ ++ LT RE Sbjct: 95 DAGALSYVMKDSRPEKLVEAIKAARRGEPVLTPGVAKKIMKRAARKGRKTEPLTPREKEV 154 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ +IA+ L +S TV ++ + KLD +R QA+ KAI + Sbjct: 155 LACLVRGNSNRDIAKTLCISETTVKTHVSNILKKLDVKDRTQAVIKAIENNLV 207 >gi|149182159|ref|ZP_01860641.1| YhcZ [Bacillus sp. SG-1] gi|148850110|gb|EDL64278.1| YhcZ [Bacillus sp. SG-1] Length = 213 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 6/114 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN---LTERET 179 GY + E L + + G + L+ +++ LT RE Sbjct: 97 AGAAGYQLKDIEPDELVDSIRKLVRGENSLHPKATNHLLKRVSRKNQPPHQIHQLTNRER 156 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ G +++EIA L ++ TV ++ + KL+ +R QA A++ G Sbjct: 157 DVLKELAKGKSNKEIAASLYITEKTVKTHISNIFAKLEVSDRTQAALYAVKHGL 210 >gi|55821406|ref|YP_139848.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55737391|gb|AAV61033.1| response regulator (homolog to RR03 Spn) [Streptococcus thermophilus LMG 18311] Length = 214 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ TS + N + G A + + ++ + +LT RE L Sbjct: 99 AGAKGYMLKTSSAAEILNSIRKVYRGEEAIETEVDNKIKYHDSHPNLHDDLTARERDILA 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L GY ++ IA +L +S+ TV ++ + KL+ +R QA+ A R + Sbjct: 159 LLAKGYDNQTIANELFISLKTVKTHVSNILGKLNVDDRTQAVVYAFRHHLVS 210 >gi|282861875|ref|ZP_06270938.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562900|gb|EFB68439.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 214 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 5/114 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERE 178 L GYV + LA + G L + + LTERE Sbjct: 98 LRAGACGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDAGGGTGRGSTLTERE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 158 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 211 >gi|297582619|ref|YP_003698399.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297141076|gb|ADH97833.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 208 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 5/112 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTE 176 FPV L Y++ TS +A+ + G +V T F++R LT+ Sbjct: 91 FPV-LDAGAFSYLLKTSTAADIADAIRKAFRGEPTFQGKVTTKMYRRFQERPKHDV-LTK 148 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 RE L L G+G +++EIA+ L ++V TV ++ KLD +R QA A Sbjct: 149 REREVLALLGEGKSNQEIADTLFIAVKTVKTHVSHILAKLDLQDRTQAAIYA 200 >gi|297158406|gb|ADI08118.1| response regulator receiver protein [Streptomyces bingchenggensis BCW-1] Length = 202 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 LG +G+V+ T+ L + + A G + + D A LT RE L+ Sbjct: 95 LGARVDGFVLKTAPPDDLVSAIRKVAVG---ERVLDASLAVTAWDLADNPLTPREVEVLR 151 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G + EIA ++ L+ TV YL + KL+A NR A+ A G+I Sbjct: 152 LVAQGAEATEIAAQVHLTAGTVRNYLTAIVTKLNARNRTDAVRIATEAGWI 202 >gi|291301217|ref|YP_003512495.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570437|gb|ADD43402.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 235 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 41/109 (37%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G++ + LA + A G + LT RE L L Sbjct: 98 AAGAAGFLYKDIDPDSLAQAIRSVADGQVIFAREAVTAMTAPAPGPVAALTAREREVLAL 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++ EIA++L ++ TV +L S KL +R QA A+ G Sbjct: 158 VAAGRSNREIAKQLSVAEKTVKTHLSSLFRKLGVADRTQAALYAVTHGM 206 >gi|86739750|ref|YP_480150.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86566612|gb|ABD10421.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 238 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 57/119 (47%), Gaps = 11/119 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK----KRSSAARNL 174 GY++ + +A+ V +G +++ +F + + + + A +L Sbjct: 116 AGAVGYLLKSIPPHEVADAVRAVHNGQSLISPSMASKLMVEFATMARGTEDRPRAHAPHL 175 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+L +G + EIA KL +S +TV ++ + KL +R++A+ A+R G Sbjct: 176 TARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 234 >gi|16330984|ref|NP_441712.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1653479|dbj|BAA18392.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 222 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 52/124 (41%), Gaps = 15/124 (12%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----------- 173 + Y + S +L + HG + + + A Sbjct: 99 SAGADAYCMKDSRTELLIEAIQAT-HGGFAWIDPAIARIVLAHAPGAEPSEPSSPSRTSL 157 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE LQL DG ++ +IAEKL ++V TV ++ + KL A +R QA +AIR Sbjct: 158 SYGLTERELEVLQLIVDGCSNADIAEKLYITVGTVKTHVRNILNKLCANDRTQAAVRAIR 217 Query: 231 FGYI 234 G + Sbjct: 218 SGLV 221 >gi|298249917|ref|ZP_06973721.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547921|gb|EFH81788.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 219 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 8/121 (6%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR 172 FP L YV+ LA+ V A G +V+ + + + Sbjct: 94 FPA-LRAGALSYVLKDVGPEELADTVRKAARGESVLHPRVAARVVEELRGNRRDAPNPFT 152 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+L DG ++ EIA+KL +S TV ++ + KL V+R QA A + G Sbjct: 153 QLSDRELDVLRLIADGCSNSEIAQKLIISEKTVKGHVSNILGKLHMVDRTQAAVFAWQQG 212 Query: 233 Y 233 Sbjct: 213 L 213 >gi|297159907|gb|ADI09619.1| putative two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 252 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ ++ + A G + + L FK +R A L Sbjct: 130 AGATGYLLKEISTDEVSTAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 189 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 190 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 249 >gi|269837581|ref|YP_003319809.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786844|gb|ACZ38987.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 211 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L + A G + L + LT RE L+L Sbjct: 98 AGATGYLLKDTTREDLFRAIRAAAAGQPLLAPSVAARLMARLNQPRQEPLTPREIDVLRL 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA +L +S TV ++L KLD +R A+ A+ G I Sbjct: 158 VAQGASNKEIAARLSISQATVKSHLIHIFDKLDVDDRTAAVTVALERGII 207 >gi|262201875|ref|YP_003273083.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085222|gb|ACY21190.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 218 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETSCL 182 GYV+ + L + G + L LT+RE L Sbjct: 107 AGARGYVVKDVDTTELVRAIQAVFGGGSAFDPRSAAIVLRSVSGDVDKPEALTDREREVL 166 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L DG +++ I + L +S TV ++ + KL R A+ A + G I Sbjct: 167 RLLADGLSNKRIGQTLFISESTVKFHIRNIIRKLGVSKRTDAVYIASKRGLI 218 >gi|226311198|ref|YP_002771092.1| transcriptional regulator [Brevibacillus brevis NBRC 100599] gi|226094146|dbj|BAH42588.1| probable transcriptional regulator [Brevibacillus brevis NBRC 100599] Length = 228 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 75/157 (47%), Gaps = 9/157 (5%) Query: 85 LPIIWQSIQEETVI----ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY--VIFTSEF 138 +P+I Q+I+E+ + E+ +L L G P+A I P+ G + GY + + + Sbjct: 75 MPLIQQAIREQRAVLLDSEAIRELPPHLVYGA-PYALI-LPISYGPNVLGYAGISWHQDG 132 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 N ++++ A ++ L R + L+ RE +Q G + +E+A + Sbjct: 133 CSGINHPLVQSLSAYCSMLGKVLATDSLRPKTVK-LSRREVEVMQRMSWGESVKEMASWM 191 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G+S TV Y+ SA KL NR Q +A AIR IC Sbjct: 192 GISEFTVQDYIKSALKKLGVQNRAQGVADAIRQRIIC 228 >gi|251799214|ref|YP_003013945.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546840|gb|ACT03859.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 217 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 54/118 (45%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA--RNLTE 176 GYV+ + L + A G Y +++ ++++ ++ S L+E Sbjct: 97 AGAAGYVLKNAPHEELLTAIRSIAQGDAYLYPTATKRLMKEYVDRMQRGDSGDLFHALSE 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L GY ++E+AE L +SV TV + + KL +R + I A++ G + Sbjct: 157 REKEVLSLTAKGYANKEMAEMLVISVKTVETHKSNVMEKLGLKSRPELIKYAMKKGLL 214 >gi|37520382|ref|NP_923759.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211375|dbj|BAC88754.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 212 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 11/120 (9%) Query: 124 LGFHKNGYVIFT--SEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNL 174 L +GY + L V GA + +V+ D + ++ A L Sbjct: 94 LAAGADGYCLKATAGIASRLLAAVASVRDGAAWLDPDIADRVLRDLGRI--PQAGADNPL 151 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +ERE L+L DG T+ EI +L ++ TV ++ + KL +R+QA +A+R G+I Sbjct: 152 SEREMEVLKLIADGLTNAEIGRRLYIASGTVRVHVSNIIAKLGVNDRVQAAVRALREGWI 211 >gi|300780243|ref|ZP_07090099.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300534353|gb|EFK55412.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 212 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G L + + +LT RE LQL Sbjct: 104 AGAVGYLLKDAPPAELLAAVRSTAKGDQAMSPMVRDRLQTRDRTPRSSLTPRELEVLQLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI ++L LS TV ++L KL +R A+A A G + Sbjct: 164 AGGSSNREIGQRLMLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGVL 212 >gi|134103684|ref|YP_001109345.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] gi|133916307|emb|CAM06420.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 218 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 40/154 (25%), Positives = 61/154 (39%), Gaps = 14/154 (9%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 V E S ++ V L +A A +R G G+++ + L V A Sbjct: 64 EATRRIVAEGSSKVLVMTTFDLDEYALAA--LRGGAG--GFLLKDTPPDGLVTAVRSVAS 119 Query: 151 GAC---YQVITDFLELFK-------KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 G V L+ F + LTERE L L G ++ E+A +L L Sbjct: 120 GDAVVSPSVTRRLLDRFLGGDGGALRDPGVLDVLTEREREVLVLVAKGLSNAELASRLFL 179 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S T+ ++G KLD +R+QA+ A G + Sbjct: 180 SEATIKTHVGRILSKLDIRDRVQAVVLAYETGLV 213 >gi|30261536|ref|NP_843913.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42780637|ref|NP_977884.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47526732|ref|YP_018081.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49184365|ref|YP_027617.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481072|ref|YP_035656.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65318804|ref|ZP_00391763.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|118476998|ref|YP_894149.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|163939354|ref|YP_001644238.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|165872654|ref|ZP_02217284.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167634292|ref|ZP_02392613.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167641615|ref|ZP_02399861.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170706386|ref|ZP_02896847.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651401|ref|ZP_02934190.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568032|ref|ZP_03020942.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036887|ref|ZP_03104273.1| DNA-binding response regulator [Bacillus cereus W] gi|196047716|ref|ZP_03114919.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206978391|ref|ZP_03239262.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217959016|ref|YP_002337564.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222095172|ref|YP_002529232.1| DNA-binding response regulator [Bacillus cereus Q1] gi|225863403|ref|YP_002748781.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227815714|ref|YP_002815723.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229599953|ref|YP_002865949.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254682399|ref|ZP_05146260.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254721216|ref|ZP_05183006.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254733815|ref|ZP_05191529.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254740493|ref|ZP_05198184.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254753884|ref|ZP_05205919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254758979|ref|ZP_05211006.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|300118514|ref|ZP_07056253.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|301053077|ref|YP_003791288.1| response regulator [Bacillus anthracis CI] gi|30255390|gb|AAP25399.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|42736557|gb|AAS40492.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|47501880|gb|AAT30556.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49178292|gb|AAT53668.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49332628|gb|AAT63274.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118416223|gb|ABK84642.1| response regulator [Bacillus thuringiensis str. Al Hakam] gi|163861551|gb|ABY42610.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] gi|164711598|gb|EDR17145.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167510408|gb|EDR85808.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167530180|gb|EDR92906.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170128920|gb|EDS97786.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|172082679|gb|EDT67742.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190560766|gb|EDV14741.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195990509|gb|EDX54491.1| DNA-binding response regulator [Bacillus cereus W] gi|196021466|gb|EDX60170.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|206743396|gb|EDZ54832.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217065203|gb|ACJ79453.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221239230|gb|ACM11940.1| DNA-binding response regulator [Bacillus cereus Q1] gi|225787204|gb|ACO27421.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227006221|gb|ACP15964.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|229264361|gb|ACQ45998.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|298724038|gb|EFI64741.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|300375246|gb|ADK04150.1| response regulator [Bacillus cereus biovar anthracis str. CI] gi|324325555|gb|ADY20815.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 210 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK LTERE+ Sbjct: 96 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHEELTERESE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 156 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 206 >gi|297194849|ref|ZP_06912247.1| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152490|gb|EDY64595.2| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 14/121 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSAA-------R 172 GY++ ++ L + V A G V+ ++ L + A Sbjct: 101 GATGYLLKSASTEELTDAVRRTAVGDPVFTPGLAGLVLGEYRRLASEPGPPAGADEPKAP 160 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 161 QLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERG 220 Query: 233 Y 233 Sbjct: 221 L 221 >gi|291514919|emb|CBK64129.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Alistipes shahii WAL 8301] Length = 212 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 49/113 (43%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFL-ELFKKRSSAARNLTERETSC 181 G+++ S+ + V A G Y Q+++ + + +A L+ RE Sbjct: 98 AGARGFLLKDSDIGDVIEAVETVAAGGSYFSPQLLSSLTGRMRTREDAADEQLSSREREI 157 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EIA++L +S TV+ + + K N + AIR G + Sbjct: 158 LVAVCRGLSNQEIADELFISKRTVDKHRANILEKTGCKNTASLVVYAIRNGIV 210 >gi|238061615|ref|ZP_04606324.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237883426|gb|EEP72254.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 233 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNL-- 174 L +G+++ + L + + + A G ++I F +A L Sbjct: 108 LQAGVSGFLLKDAGPAELLHAIRVVAAGDALLAPRITRRLIGQFTAQRTATQAAESRLAV 167 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L L G G ++ EI +L LS T ++ A KL A +R Q + A + G Sbjct: 168 LTQREREVLTLVGRGLSNNEIGAELFLSPATARTHVSHAMAKLGARDRAQLVVIAYQTGL 227 Query: 234 IC 235 + Sbjct: 228 VS 229 >gi|228932822|ref|ZP_04095692.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945136|ref|ZP_04107496.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229010843|ref|ZP_04168040.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048] gi|229016795|ref|ZP_04173725.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273] gi|229023000|ref|ZP_04179517.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272] gi|229058174|ref|ZP_04196563.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603] gi|229090494|ref|ZP_04221732.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42] gi|229096030|ref|ZP_04227005.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29] gi|229102142|ref|ZP_04232853.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28] gi|229114984|ref|ZP_04244396.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3] gi|229132346|ref|ZP_04261200.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196] gi|229160490|ref|ZP_04288485.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803] gi|229166381|ref|ZP_04294138.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621] gi|228617123|gb|EEK74191.1| hypothetical protein bcere0007_13540 [Bacillus cereus AH621] gi|228622900|gb|EEK79731.1| hypothetical protein bcere0009_12820 [Bacillus cereus R309803] gi|228651052|gb|EEL07033.1| hypothetical protein bcere0014_12820 [Bacillus cereus BDRD-ST196] gi|228668496|gb|EEL23926.1| hypothetical protein bcere0017_12800 [Bacillus cereus Rock1-3] gi|228681342|gb|EEL35508.1| hypothetical protein bcere0019_13050 [Bacillus cereus Rock3-28] gi|228687415|gb|EEL41318.1| hypothetical protein bcere0020_12790 [Bacillus cereus Rock3-29] gi|228692844|gb|EEL46565.1| hypothetical protein bcere0021_13200 [Bacillus cereus Rock3-42] gi|228720139|gb|EEL71721.1| hypothetical protein bcere0026_12890 [Bacillus cereus AH603] gi|228738306|gb|EEL88785.1| hypothetical protein bcere0029_13450 [Bacillus cereus AH1272] gi|228744531|gb|EEL94603.1| hypothetical protein bcere0030_13630 [Bacillus cereus AH1273] gi|228750517|gb|EEM00346.1| hypothetical protein bmyco0001_12980 [Bacillus mycoides DSM 2048] gi|228814580|gb|EEM60841.1| hypothetical protein bthur0007_13010 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826872|gb|EEM72636.1| hypothetical protein bthur0009_12960 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 196 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK LTERE+ Sbjct: 82 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHEELTERESE 141 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 142 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 192 >gi|209863937|gb|ACI88882.1| AlnR5 two component response regulator [Streptomyces sp. CM020] Length = 201 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 51/108 (47%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GYV+ + LA + A G +VI L L A+ LT RE L+LA Sbjct: 97 QVDGYVLKDALPSELAQAIRKVAAGQ--RVIDPQLALM-AWDGPAQQLTPREVDVLRLAA 153 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G IA++L LS+ TV YL + KL A NR+ A+ A G I Sbjct: 154 AGEDVRVIAKELHLSIGTVRNYLTTIVHKLGARNRVDAVRIARDNGVI 201 >gi|310824729|ref|YP_003957087.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|309397801|gb|ADO75260.1| Two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 200 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + + + + H V + + +R LTERE L+ Sbjct: 91 AGARGYLLKGATGPEILDAIRAV-HRGLRHVAPEAAAMLVER-VGDSPLTERERQTLEAM 148 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++++IA++L ++ TV A++ KL +R QA+ +A+R G I Sbjct: 149 ARGRSNKQIAQELSITEATVKAHVTQILSKLGVDDRTQAVTRALRRGLI 197 >gi|75812776|ref|YP_320393.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705532|gb|ABA25204.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 209 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ +E L N + H + D +R S L+ERE + L+ Sbjct: 99 LQAGAKGYLLKETEPDELLNAIRTV-HRGQKYIPPDVGAKLVQRLSNPE-LSERELAVLR 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G ++ EIA L + TV +++ KLD +R QA+ A++ G + Sbjct: 157 SLAQGMSNAEIAAALSIGEGTVKSHVNRILNKLDVSDRTQAVIVAVKRGIVS 208 >gi|304409402|ref|ZP_07391022.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307303760|ref|ZP_07583513.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|304351920|gb|EFM16318.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306912658|gb|EFN43081.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] Length = 216 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTER 177 L NG+++ L + + A G + ++ + + + + L+ER Sbjct: 100 LQAGANGFLLKDVSLDKLLHAIETVAKGGYLIEPSVLKQMSEPKPAPSVGVTRNELLSER 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G++++EIA + L+ TV ++ + KLD +R QA+ K ++ I Sbjct: 160 EREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLALI 216 >gi|300859427|ref|YP_003784410.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300686881|gb|ADK29803.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302207104|gb|ADL11446.1| Two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis C231] gi|302331665|gb|ADL21859.1| Two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis 1002] gi|308277359|gb|ADO27258.1| Two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis I19] Length = 212 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G T L + + +LT RE L+L Sbjct: 104 AGALGYLLKDAPPEELLAAVRSAAEGDSTLSPTVANRLMTRVRTPRTSLTPRELEVLKLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +I L LS TV ++L KL +R A+A A G + Sbjct: 164 AGGSSNRDIGRVLLLSEATVKSHLVHIYDKLGVRSRTSAVAIAREQGVL 212 >gi|300782049|ref|YP_003762340.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299791563|gb|ADJ41938.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 222 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL---ELFKKRSSAARN 173 L +G+++ +E + L + + A+G ++I +F+ E + +SA R Sbjct: 96 LRAGASGFLLKDTEPVELLRALRVVANGEALLAPTVTRRLIQEFVGRPENRRIDTSAVRE 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T+RE L L G +++EIA L +S T ++ K+ A +R Q + A G Sbjct: 156 ITDREREVLGLVAGGMSNDEIAAHLVISTATARTHVSRIMTKIGARDRAQLVVLAYESGL 215 Query: 234 IC 235 + Sbjct: 216 VT 217 >gi|295396928|ref|ZP_06807052.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] gi|294974862|gb|EFG50565.1| DNA-binding response regulator [Aerococcus viridans ATCC 11563] Length = 210 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFL--ELFKKRSSAARNLTERETS 180 GY++ TS +A+ + G V + E+ R +LT RE Sbjct: 96 AGAKGYILKTSSANEIASAIRRTYAGESVIAPTVNEKLIAHEVEANRHHLHDDLTTRERE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQL G +++EIA++L +++ TV ++ + KL +R QA A + + Sbjct: 156 VLQLIAAGKSNQEIADELFITLKTVKTHVSNILSKLGVEDRTQATIYAFQNQLV 209 >gi|228984618|ref|ZP_04144793.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775145|gb|EEM23536.1| hypothetical protein bthur0001_13210 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 204 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK LTERE+ Sbjct: 90 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHEELTERESE 149 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 150 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 200 >gi|228920248|ref|ZP_04083596.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228926569|ref|ZP_04089640.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229121079|ref|ZP_04250319.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201] gi|229138230|ref|ZP_04266826.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26] gi|229183733|ref|ZP_04310953.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1] gi|229195738|ref|ZP_04322500.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293] gi|228587744|gb|EEK45800.1| hypothetical protein bcere0001_13030 [Bacillus cereus m1293] gi|228599776|gb|EEK57376.1| hypothetical protein bcere0004_13030 [Bacillus cereus BGSC 6E1] gi|228645262|gb|EEL01498.1| hypothetical protein bcere0013_13520 [Bacillus cereus BDRD-ST26] gi|228662408|gb|EEL18008.1| hypothetical protein bcere0016_13860 [Bacillus cereus 95/8201] gi|228833157|gb|EEM78723.1| hypothetical protein bthur0010_12870 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228839447|gb|EEM84740.1| hypothetical protein bthur0011_12640 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 204 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK LTERE+ Sbjct: 90 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHEELTERESE 149 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 150 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 200 >gi|213965869|ref|ZP_03394060.1| two-component system response regulator [Corynebacterium amycolatum SK46] gi|213951447|gb|EEB62838.1| two-component system response regulator [Corynebacterium amycolatum SK46] Length = 227 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + G L + + LT RE L+L Sbjct: 117 AGAVGYLLKDAAPEELIDGIRRAVRGETVLNTQVAGRLMGRMRNPNTALTPRELEVLELV 176 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IAE+L L+ TV ++L KLD +R A+A+A G + Sbjct: 177 ARGMSNRKIAEQLVLTEATVKSHLVHIFTKLDVSSRTAAVARAQELGML 225 >gi|298248387|ref|ZP_06972192.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551046|gb|EFH84912.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 215 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFL--ELFKKRSSAARNL 174 + GY++ ++ + + G ++I F + A L Sbjct: 96 MRAGARGYLLKGADQDETMRAIQAVSRGEAIFSPVIAKRLIRYFTPTKASTTPPQAFPEL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE L L G + EIA++L LS+ TV +L + KL +R+QAI +A G Sbjct: 156 TEREREILSLLAQGLNNAEIAQRLVLSLKTVRNHLSNVFNKLQVADRVQAIIRAREAGL 214 >gi|218902648|ref|YP_002450482.1| DNA-binding response regulator [Bacillus cereus AH820] gi|218535833|gb|ACK88231.1| DNA-binding response regulator [Bacillus cereus AH820] Length = 210 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK LTERE+ Sbjct: 96 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHEELTERESE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 156 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 206 >gi|329117459|ref|ZP_08246176.1| response regulator receiver domain protein [Streptococcus parauberis NCFD 2020] gi|326907864|gb|EGE54778.1| response regulator receiver domain protein [Streptococcus parauberis NCFD 2020] Length = 213 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV GY++ TS + N + A G A + ++ K LT RE Sbjct: 94 PVIDA-GAKGYMLKTSSAAEILNAIKKVAKGQLAIETEVDKKIKEHDKNPELHEELTARE 152 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KLD +R QA+ A + + Sbjct: 153 FDILYLLAKGYDNQTIADELFISLKTVKTHVSNILSKLDVDDRTQAVVYAFQHHIV 208 >gi|284030612|ref|YP_003380543.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809905|gb|ADB31744.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 227 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKK--RSSAARNL 174 LG +G+++ + L + + G +VI F ++ R L Sbjct: 100 LGAGASGFLLKNTAPEDLVEAIQVVHSGHALLAPEVTRRVIKRFAGGGERVYRPDLVAEL 159 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L L G T+ EIA +L + TV ++ +KL +R+QA+ A G + Sbjct: 160 TDREREVLGLIARGLTNTEIAGQLFVGEATVKTHVSRVLLKLGLRDRVQAVVFAYECGLV 219 Query: 235 C 235 Sbjct: 220 V 220 >gi|254442066|ref|ZP_05055542.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198256374|gb|EDY80682.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 220 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--------- 171 L +GY++ + L + + G + + + L F + S A Sbjct: 97 LKAGSSGYLLKDTPSKQLVEAIRAVSSGESFLQPSIASKVLAEFSRMSGPAAVKKAPVQL 156 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L G +++EIA L L+ TV ++ + KL ++R QA A Sbjct: 157 REPLSQREEQVLVWLSRGCSNKEIASHLDLAEGTVKNHVSNVLGKLGVLDRTQAALMARD 216 Query: 231 FGYI 234 G + Sbjct: 217 LGLV 220 >gi|1217954|emb|CAA65307.1| regulatory protein [Erwinia chrysanthemi] Length = 250 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 68/196 (34%), Gaps = 26/196 (13%) Query: 62 GDIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSGQLS--VRLEGGL 112 + P ++ Y ++ H + +L P W ++ VI S + S L Sbjct: 48 SNYPTEWVDIYRNNNYQHIDPVILTAINKISPFSW---DDDLVISSKLKFSRIFNLSKDY 104 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLA-------------NEVIIEAHGACYQVITD 159 G F + + + F E ++I AH + + Sbjct: 105 DIVNGYTFVLHSPGNNLAALSFMIEEHRSEELEEIIQNNKDKLQMLLISAHEKLTSLYRE 164 Query: 160 FLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 S +L ++RE L A G T +EIA LG++ TV ++G+ KL Sbjct: 165 MSRNRNNSKSQEADLFSQRENEILHWASMGKTYQEIALILGITTSTVKFHIGNVVKKLGV 224 Query: 219 VNRIQAIAKAIRFGYI 234 +N AI + I Sbjct: 225 LNAKHAIRLGVEMNLI 240 >gi|291444045|ref|ZP_06583435.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346992|gb|EFE73896.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 214 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 13/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK------RSSAARN 173 GY++ ++ L + V A G V+ ++ L A Sbjct: 92 GATGYLLKSASTQELTDAVRSTAAGDPVFTPGLAGLVLGEYRRLASDPAPVASDEPKAPQ 151 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 152 LTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 211 >gi|163943094|ref|YP_001647978.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|229014574|ref|ZP_04171690.1| Two component transcriptional regulator, LuxR [Bacillus mycoides DSM 2048] gi|229065062|ref|ZP_04200357.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH603] gi|229136229|ref|ZP_04264978.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST196] gi|229170116|ref|ZP_04297805.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH621] gi|163865291|gb|ABY46350.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] gi|228613347|gb|EEK70483.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH621] gi|228647209|gb|EEL03295.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST196] gi|228716204|gb|EEL67920.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH603] gi|228746726|gb|EEL96613.1| Two component transcriptional regulator, LuxR [Bacillus mycoides DSM 2048] Length = 215 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-----------ELFKKRSSAAR 172 L +GY++ E L + G Q+ D E ++ S Sbjct: 95 LKAGASGYILKDIEPDQLVEAIRSAYKGNI-QLHPDIANALLSQTLPQEEKEEEPSVQVD 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 154 VLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHMSSILSKLHLSDRTQAALYAVKNG 213 Query: 233 YI 234 + Sbjct: 214 IV 215 >gi|298249284|ref|ZP_06973088.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547288|gb|EFH81155.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 216 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 Y++ LA+ + A G +V+ + ++ L+ERE Sbjct: 99 AGALSYLLKDIGLPDLADAIRKAACGEVVMHPHIAARVVQELDGASHPDMASFAQLSERE 158 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L +G ++ IA++L LS TV +++ + KL V+R QA A R G Sbjct: 159 REVLRLIAEGLSNAAIADRLVLSEKTVKSHVRNILGKLHLVDRTQAAIFAWRQGL 213 >gi|294629677|ref|ZP_06708237.1| nitrate/nitrite response regulator [Streptomyces sp. e14] gi|292833010|gb|EFF91359.1| nitrate/nitrite response regulator [Streptomyces sp. e14] Length = 267 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 145 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 204 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 205 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 264 >gi|296128146|ref|YP_003635396.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296019961|gb|ADG73197.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 225 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G+++ +E L V A G +V+ + + + + A Sbjct: 100 LEAGASGFLLKDAEPATLVEAVRSVAAGHGMLANALTRRVLREVVTRRRTQPVTAARASE 159 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++EEIA +L L V TV ++L A KL +R+QA+ A + G Sbjct: 160 LLTPRELDILLLLAQGMSNEEIARELYLEVSTVKSHLARAMPKLGVRSRLQAVVWAYQNG 219 Query: 233 YI 234 + Sbjct: 220 IV 221 >gi|157467980|gb|ABV57378.1| ExpR [Erwinia chrysanthemi] Length = 250 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 83/229 (36%), Gaps = 21/229 (9%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQL--ICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 IQN + + + + A +++ + + NY + +I + D + Sbjct: 15 IQNYLNRKLKSYGDLKYAYLIMNKKKPTDVVIISNYPSEWVEIYRSNNYQHIDPVILTAI 74 Query: 82 SGLLPIIWQSIQEETVIESSGQLS--VRLEGGLLPFAGIAFPVRLGFHKNGYVIF----- 134 + + P W + VI S + S L G F + + + F Sbjct: 75 NKISPFSW---DDNLVISSKLKFSRIFNLSKEYDIVNGYTFVLHDPGNNLATLSFMFEEN 131 Query: 135 -TSEFLMLANE-------VIIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLA 185 + E + + ++I AH + + + S NL ++RE L A Sbjct: 132 RSGELEEIVHNNKEKLQMLLISAHEKLTSLYREMSKNKNNSKSQEPNLFSQRENEILYWA 191 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T +EIA LG++ TV ++G+ KL +N AI + I Sbjct: 192 SMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240 >gi|229099838|ref|ZP_04230762.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-29] gi|228683584|gb|EEL37538.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-29] Length = 215 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFL---ELFKKRSSAARN 173 L +GY++ E L + G +I+ L E ++ Sbjct: 95 LKAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIASALISQTLPQEERAEEHFVHVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|111221195|ref|YP_711989.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111148727|emb|CAJ60403.1| Putative two-component system response regulator [Frankia alni ACN14a] Length = 213 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 11/119 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK----KRSSAARNL 174 GY++ + +A+ V +G +++ +F + + + A +L Sbjct: 91 AGAVGYLLKSIPPHEVADAVRAVHNGQSLISPSMASKLMVEFATMARGTEDRPRVNAPHL 150 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+L +G + EIA KL +S +TV ++ + KL +R++A+ A+R G Sbjct: 151 TARELEVLKLVAEGRANREIARKLFISENTVKNHVRNILDKLQLHSRMEAVMYAVRQGL 209 >gi|152999817|ref|YP_001365498.1| two component LuxR family transcriptional regulator [Shewanella baltica OS185] gi|151364435|gb|ABS07435.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS185] Length = 216 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTER 177 L NG+++ L + + A G + ++ + + + + L+ER Sbjct: 100 LQAGANGFLLKDVSLDKLLHAIETVAKGGYLIEPSVLKQMSEPKPAPSVGVTRNELLSER 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G++++EIA + L+ TV ++ + KLD +R QA+ K ++ I Sbjct: 160 EREILSFMAGGFSNKEIANAVFLAEGTVKNHVSNILTKLDCRDRTQAVLKGLQLALI 216 >gi|119960873|ref|YP_948224.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119947732|gb|ABM06643.1| putative two-component system response regulator [Arthrobacter aurescens TC1] Length = 237 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 14/124 (11%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK-------KRSSAA 171 +G+++ + L + G +++ L + + ++A Sbjct: 111 AGASGFLLKDAPPEELLEAIRTVFRGDAVIAPSTTRRLLDHVAPLLRTQTPEQTEHAAAV 170 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE QL G ++ EIA L LS TV ++G KL A +R+Q + A Sbjct: 171 ERLTAREREVFQLIAQGQSNPEIAAGLFLSEATVKTHVGHILAKLGARDRVQVVVIAYET 230 Query: 232 GYIC 235 G + Sbjct: 231 GVVA 234 >gi|269219961|ref|ZP_06163815.1| two-component system response regulator [Actinomyces sp. oral taxon 848 str. F0332] gi|269210597|gb|EEZ76937.1| two-component system response regulator [Actinomyces sp. oral taxon 848 str. F0332] Length = 230 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 48/120 (40%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-----------QVITDFLELFKKRSSAARNL 174 +G+++ + + + G ++ + + L Sbjct: 105 AGASGFLVKDAPPDQMLEAIRTIHRGDAVIGPSSTKKLVEKLAKEATAMRATDPHILDGL 164 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+L G T+ EIA+ L ++ T+ ++G KL A +R+QA+ A G + Sbjct: 165 TEREIEVLKLVAQGLTNGEIAKTLTVAEATIKTHIGHIFYKLGARDRVQAVVLAYEAGLV 224 >gi|229155851|ref|ZP_04283952.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228627458|gb|EEK84184.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 211 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L ++ G ++ L + K++ S LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIVAVHQGNANFHPKITPALLGRSAIKKEKESPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E LQ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EQEVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209 >gi|254393044|ref|ZP_05008206.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706693|gb|EDY52505.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 221 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 14/121 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA-------AR 172 GY++ ++ L + V A G V+ ++ L + + A Sbjct: 92 GATGYLLKSASTEELIDAVRRTADGDAVFTPGLAGLVLGEYRRLAGEPAPTPGGPEPKAP 151 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 152 RLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERG 211 Query: 233 Y 233 Sbjct: 212 L 212 >gi|330468534|ref|YP_004406277.1| LuxR family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811505|gb|AEB45677.1| LuxR family two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 229 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKK--------RSSAAR 172 L +G++ L + A G +++ L+ F A Sbjct: 104 LRAGASGFLSKDVPAEDLITAIRTVAAGDAVVAPRILRRLLDRFADVLPDPAASPPKALS 163 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G ++ EIA L +S T+ ++G+ KL +R+QA+ A G Sbjct: 164 TLTDREREVLGQVARGLSNAEIARALSVSETTIKTHVGNVLTKLGLRDRVQAVVLAYESG 223 Query: 233 YI 234 + Sbjct: 224 LV 225 >gi|326330817|ref|ZP_08197118.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325951347|gb|EGD43386.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 209 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTERETSCLQ 183 GY++ + L V A G + L + + L+ RE L Sbjct: 98 AGATGYLLKDAPTTDLVEAVRATAAGETVLSPAVATRLASRLRSPGPSAQLSPREREVLT 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T+ IA KL +S TV +LG KL +R A+A+A G + Sbjct: 158 LVARGTTNRVIAAKLFVSEATVKTHLGHIFDKLGVTDRAAAVARAYDRGIL 208 >gi|89100435|ref|ZP_01173298.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89084864|gb|EAR64002.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 214 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 5/120 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFL-ELFKKRSSAARNL 174 FP + Y++ T+ + + ++ A G +V T + L + L Sbjct: 90 VFPA-IEAGAFSYMLKTATADEVLDCILKAARGEPVIEPKVATKMMGRLRGREKKPHEEL 148 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L G+G T++EI+ +L + + TV ++ + KL +R QA A + G I Sbjct: 149 TERELEVLLCIGEGMTNQEISNQLFIGIKTVKTHVSNILSKLSVSDRTQAAVYAHQNGLI 208 >gi|297571014|ref|YP_003696788.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum DSM 20595] gi|296931361|gb|ADH92169.1| two component transcriptional regulator, LuxR family [Arcanobacterium haemolyticum DSM 20595] Length = 230 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 11/119 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-----------QVITDFLELFKKRSSAARNL 174 +G+++ + + + G ++ TD + L + +L Sbjct: 104 AGASGFLLKDAPTAKMLEAIRTIYQGDAVIAPSTTRRLVDRLATDSIRLHASKPEVLDDL 163 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L G T+ EIA++L ++ TV ++ KL +R+QA+ A G Sbjct: 164 TDREREVFYLIARGLTNTEIADRLYVAEATVKTHVTRIFAKLGVRDRVQAVVIAYEAGI 222 >gi|308067670|ref|YP_003869275.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] gi|305856949|gb|ADM68737.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] Length = 199 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA+ + G EL + LTERE + L L Sbjct: 94 AGTHGYLLKDSPSEELASSIRSIMAGRRIYA----PELVDDAYAEVNPLTEREKTVLALI 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 DG ++EIA +L L+ TV Y+ KL NRI+AI + G+ Sbjct: 150 ADGKNTKEIAGELYLTTGTVRNYISVILDKLGVSNRIEAITRFNEKGW 197 >gi|206975855|ref|ZP_03236766.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217962901|ref|YP_002341479.1| DNA-binding response regulator [Bacillus cereus AH187] gi|222098883|ref|YP_002532941.1| DNA-binding response regulator [Bacillus cereus Q1] gi|229142155|ref|ZP_04270680.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST26] gi|206745949|gb|EDZ57345.1| DNA-binding response regulator [Bacillus cereus H3081.97] gi|217063637|gb|ACJ77887.1| DNA-binding response regulator [Bacillus cereus AH187] gi|221242942|gb|ACM15652.1| DNA-binding response regulator [Bacillus cereus Q1] gi|228641444|gb|EEK97750.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST26] Length = 215 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K + Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGV 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|306837140|ref|ZP_07470077.1| two component system response regulator [Corynebacterium accolens ATCC 49726] gi|304566988|gb|EFM42616.1| two component system response regulator [Corynebacterium accolens ATCC 49726] Length = 223 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + V A G L + + +LT RE LQL Sbjct: 115 AGAVGYLLKDAPPQELLDAVHSTAEGDSALSPIVADRLMTRVRTPRTSLTPRELEVLQLV 174 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +I L LS TV ++L KL +R A+A A G + Sbjct: 175 AAGASNRQIGHDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 223 >gi|317047630|ref|YP_004115278.1| LuxR family transcriptional regulator [Pantoea sp. At-9b] gi|316949247|gb|ADU68722.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 240 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 76/227 (33%), Gaps = 30/227 (13%) Query: 23 LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82 L+Q I+ F + P + I L TY +D++ H+ S Sbjct: 29 LLQKHIETLGFDYFAFLIQHPVPFTRPRI---------------FLFSTYPEDWVKHYES 73 Query: 83 ----GLLPIIW------QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 + P++ ++ + + +G + G + Sbjct: 74 ENYYAVDPVLLLCQRPGHGVEWTRDLFTGAGNLWAEANAYGLMSGFSCSAMASNRAIGIL 133 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERETSCLQLAGD 187 S + +E + + L + ++ + A + ++RE L+ + Sbjct: 134 SIASGQQSKTQHLRVELEVKLHFLAELSLRVLERLNDNAMVVLSNDFSQRELEILKWTAE 193 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EI+ L +S HTVN + + + + N+ Q A G I Sbjct: 194 GKTSAEISLILAISEHTVNFHQKNMQKRFNVSNKTQIACYAAAIGLI 240 >gi|30023441|ref|NP_835072.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|228961674|ref|ZP_04123282.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pakistani str. T13001] gi|229051082|ref|ZP_04194629.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH676] gi|229112824|ref|ZP_04242356.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-15] gi|229130659|ref|ZP_04259615.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-Cer4] gi|229147955|ref|ZP_04276296.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST24] gi|296505833|ref|YP_003667533.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] gi|29899002|gb|AAP12273.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|228635605|gb|EEK92094.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-ST24] gi|228652998|gb|EEL08880.1| Two component transcriptional regulator, LuxR [Bacillus cereus BDRD-Cer4] gi|228670658|gb|EEL25970.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-15] gi|228722293|gb|EEL73691.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH676] gi|228798024|gb|EEM45029.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pakistani str. T13001] gi|296326885|gb|ADH09813.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] Length = 215 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K ++ Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANALLSQTLPVEEKEEESSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|229172177|ref|ZP_04299742.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3] gi|228611520|gb|EEK68777.1| hypothetical protein bcere0006_12910 [Bacillus cereus MM3] Length = 207 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK LTERE+ Sbjct: 93 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHEELTERESE 152 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 153 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 203 >gi|261407454|ref|YP_003243695.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329927546|ref|ZP_08281731.1| putative nitrate/nitrite response regulator protein NarL [Paenibacillus sp. HGF5] gi|261283917|gb|ACX65888.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328938415|gb|EGG34804.1| putative nitrate/nitrite response regulator protein NarL [Paenibacillus sp. HGF5] Length = 219 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 8/117 (6%) Query: 124 LGFHKNGYVIFTSEFL-------MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 L GY++ +A + + ++++ +F + + K + LT Sbjct: 98 LKRGAQGYLLKNLNPESWHEYLKAIAVDEAPVSRELAFRILKEFSQ-YDKPDPSKSPLTA 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L +G ++ +I+ L +S +TV +L + KL NR+Q A G+ Sbjct: 157 REKEILGLVAEGLSNRDISSDLCISENTVKNHLKNILQKLHLENRVQLTRYAFEQGW 213 >gi|311742864|ref|ZP_07716672.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311313544|gb|EFQ83453.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 216 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA-----RNLT 175 L +G+++ L + + A G +V + R++ LT Sbjct: 97 LQAGASGFLLKNCPPDDLVQAIRLAAEGHSLLAPEVTQRVIARSTSRAAPEADGRLDELT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ERE L L G+++ EIA +L +S TV +++ KL+ +R+QA+ A G Sbjct: 157 ERERDVLVLLARGHSNAEIAGELYVSAATVKSHVSHILAKLEVRDRVQAVILAFENGL 214 >gi|255532850|ref|YP_003093222.1| response regulator receiver [Pedobacter heparinus DSM 2366] gi|255345834|gb|ACU05160.1| response regulator receiver [Pedobacter heparinus DSM 2366] Length = 206 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 37/112 (33%), Positives = 49/112 (43%), Gaps = 5/112 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL--TERETSCL 182 +GYV+ + L + + G Y F L R A L T RE L Sbjct: 98 DNGASGYVLKNATKEELLEAINAVSKGKVYYSQEAFSSL---RIPAPDQLLITRREKEVL 154 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G T+ EIAEKL +S+ TVN + S K + N I KAI+ G I Sbjct: 155 LLIAEGLTNAEIAEKLFISIPTVNTHRKSLIEKFNVKNTAMLIGKAIKLGLI 206 >gi|256372733|ref|YP_003110557.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] gi|256009317|gb|ACU54884.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] Length = 222 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 62/150 (41%), Gaps = 9/150 (6%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFP--VRLG--FHKNGYVIFTSEFLMLANEVI 146 + + + LSVR G L P VR GYV+ + +L + V Sbjct: 59 RLADGDGVRLIAWLSVRGTGAPLVVTAYEDPYLVRSAVEAGARGYVLKDATEAVLHDAVR 118 Query: 147 IEAHGA-CYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 A G + + D + + L++RE L+L G T+ EIAE L +S TV Sbjct: 119 RVARGGIAFVGVGDVAGVLG----SDVVLSDRERQVLELVARGRTNVEIAEALAISEATV 174 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +L K+ A NR A+ +A+ G I Sbjct: 175 KTHLAHVFDKVGATNRTSAVLRAMELGLIA 204 >gi|42784585|ref|NP_981832.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42740517|gb|AAS44440.1| DNA-binding response regulator [Bacillus cereus ATCC 10987] Length = 215 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K + Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGV 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|307327120|ref|ZP_07606309.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887201|gb|EFN18198.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 236 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L +G+++ L + V + A G V +E + + ++ R Sbjct: 94 LHAGASGFLLKDVRRDDLVHAVRVVARGDSLLAPSVARRLVEQYTRATARPRRPDPRLDM 153 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ EIA +L +S HTV ++G+ KL +RIQA+ A G Sbjct: 154 LTARERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETGL 213 Query: 234 IC 235 I Sbjct: 214 IT 215 >gi|296138093|ref|YP_003645336.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026227|gb|ADG76997.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 222 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARNLTERE 178 GY++ ++ L V A G V+ +F + + A LT RE Sbjct: 107 AGACGYLVKSASAEELVAAVRATAAHQPVFTPGLAGLVLGEFRRMAAEPEPAGPQLTPRE 166 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T L+L G ++++IA +L LS TV ++ + KL NR++ A+ G Sbjct: 167 TEVLRLVAKGLSAKQIATRLHLSHRTVENHVQATLRKLQLGNRVELARYALENGL 221 >gi|288574415|ref|ZP_06392772.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570156|gb|EFC91713.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 211 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 2/112 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ T+ LA + G Y + + +L+ RE L Sbjct: 96 LRAGAKGFLLKTTSPEALAKALQTVVSGGLY--LDSEVASAMGEVPQMEDLSPREREVLL 153 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 A G +S+E+A L +S TV +L S KL A N+ +A+ A+++G + Sbjct: 154 FAARGLSSKEVASHLFISERTVQTHLASIYDKLGAHNKTEAMLLALKYGLLT 205 >gi|147678376|ref|YP_001212591.1| response regulator [Pelotomaculum thermopropionicum SI] gi|146274473|dbj|BAF60222.1| response regulator [Pelotomaculum thermopropionicum SI] Length = 223 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSA--ARNLTE 176 + YV+ S L V A G + +++ + ++ +R LT Sbjct: 102 DGCSAYVLKDSPPEQLIEVVESVAEGRYFVDTSIANELLVNLVQGTPRRQHPKNLPLLTL 161 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQL +G +++EIA KL +++ TV A++ S +KL+ +R QA AI+ + Sbjct: 162 REKEVLQLIVNGLSNKEIAGKLNITLRTVKAHVSSILMKLNVNDRTQAAVLAIQENLV 219 >gi|104781941|ref|YP_608439.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95110928|emb|CAK15646.1| putative transcriptional regulator, luxR family [Pseudomonas entomophila L48] Length = 235 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 71/227 (31%), Gaps = 7/227 (3%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 +++++L + + + + F L++ N+A D + E + Sbjct: 14 EQATTLALIQSAVRSVARPLGYDRFVLFSANAARDEVVERIHWVEGDWFGDGLRVDAQTY 73 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 I H + P W + E + V G+ PV Sbjct: 74 IRHC--PVNRHLLTAREPFFWS----KREGEGGERYHVVRAPVGTGVHGLQVPVFGPAGL 127 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQLAGD 187 G + + + + L + L+ERE L Sbjct: 128 EGAMSLGGLHIDASPATRMCLALLANAAFHAARRLLEAPVGQEVGVLSERERQVLAWTAA 187 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +IA LGLSV TV +L +A +L QAI A+ G + Sbjct: 188 GQRQADIAATLGLSVRTVENHLRAARRRLGVATTAQAIRIALGSGVL 234 >gi|297194044|ref|ZP_06911442.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152083|gb|EFH31522.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 253 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 131 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 190 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 191 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 250 >gi|239980315|ref|ZP_04702839.1| LuxR response regulator receiver [Streptomyces albus J1074] gi|291452180|ref|ZP_06591570.1| regulator [Streptomyces albus J1074] gi|291355129|gb|EFE82031.1| regulator [Streptomyces albus J1074] Length = 203 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L H +GY++ + LA V G ++VI L L A LTERET L+ Sbjct: 95 LSAHVSGYLLKDAPPQELAAAVRRVVAG--HRVIDPQLAL-SAWDGADSPLTERETEVLR 151 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G+ EIA++L LS TV YL + KL+A NR+ AI A ++ Sbjct: 152 LVAQGWEPSEIAKELHLSAGTVRNYLTTVVSKLNARNRVDAIRIAQASDWL 202 >gi|228990549|ref|ZP_04150514.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM 12442] gi|228996650|ref|ZP_04156289.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17] gi|229004298|ref|ZP_04162099.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4] gi|228757159|gb|EEM06403.1| hypothetical protein bmyco0002_12630 [Bacillus mycoides Rock1-4] gi|228763282|gb|EEM12190.1| hypothetical protein bmyco0003_12370 [Bacillus mycoides Rock3-17] gi|228769075|gb|EEM17673.1| hypothetical protein bpmyx0001_13110 [Bacillus pseudomycoides DSM 12442] Length = 210 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK +LTERE Sbjct: 96 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHEDLTEREFE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 156 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 206 >gi|229074728|ref|ZP_04207749.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18] gi|228708471|gb|EEL60623.1| hypothetical protein bcere0024_12850 [Bacillus cereus Rock4-18] Length = 199 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK LTERE+ Sbjct: 85 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHEELTERESE 144 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 145 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 195 >gi|229084537|ref|ZP_04216810.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44] gi|228698773|gb|EEL51485.1| hypothetical protein bcere0022_11730 [Bacillus cereus Rock3-44] Length = 196 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA--RNLTERETS 180 Y++ TS +A+ V G +V + +++ +LTERE Sbjct: 82 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLYEDLTEREFE 141 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 142 ILMLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 192 >gi|297198721|ref|ZP_06916118.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197715398|gb|EDY59432.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 213 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 50/115 (43%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR--NLTERE 178 L GYV + LA + G +V L + S R +LTERE Sbjct: 97 LRAGAAGYVYKDIDPDALAGAIRSVHAGHILLQPEVAGVLLSQEENNSGQGRGGSLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGL 211 >gi|254387129|ref|ZP_05002401.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194345946|gb|EDX26912.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 243 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 121 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 180 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 181 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 240 >gi|21220292|ref|NP_626071.1| two component response regulator [Streptomyces coelicolor A3(2)] gi|5123537|emb|CAB45293.1| putative two component response regulator [Streptomyces coelicolor A3(2)] Length = 210 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 5/114 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTERE 178 L GYV + LA + G L + S+ A +LTERE Sbjct: 94 LRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEESSSGPGRAGSLTERE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 154 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 207 >gi|296268892|ref|YP_003651524.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091679|gb|ADG87631.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 197 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ + LA + H + + L ++ LT+RE L+ Sbjct: 90 LAAGVRGFIPKDAPAEQLAEAIRKV-HAGGRYLDPELAAL--AMTAGDCPLTQRERDALK 146 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA +G T EIA + LS TV YL +A KL A NRI AI A G+I Sbjct: 147 LAAEGATVAEIAAAIHLSEGTVRNYLSNAITKLGAGNRITAIRVAREMGWI 197 >gi|325676301|ref|ZP_08155980.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325552862|gb|EGD22545.1| LuxR family DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 208 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 47/110 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + +L V A G L+++ L+ RE L L Sbjct: 99 AGASGYLLKDTAPEVLIESVFAAARGDTVLDPDVAQRLYRRMQQPRVELSGREVEVLDLV 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G ++ IA++L +S TV ++L A KL +R A+A A G I Sbjct: 159 AQGLSNRAIAKQLFVSEATVKSHLVHAFTKLGVDSRTAAVAAARERGLIT 208 >gi|256788589|ref|ZP_05527020.1| two component response regulator [Streptomyces lividans TK24] gi|289772481|ref|ZP_06531859.1| two component response regulator [Streptomyces lividans TK24] gi|289702680|gb|EFD70109.1| two component response regulator [Streptomyces lividans TK24] Length = 213 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 5/114 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTERE 178 L GYV + LA + G L + S+ A +LTERE Sbjct: 97 LRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEESSSGPGRAGSLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210 >gi|257056663|ref|YP_003134495.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256586535|gb|ACU97668.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 239 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA-----ARNLT 175 L +G+++ + L V I A G +V + F + LT Sbjct: 116 LRAGASGFLLKNASPEDLIESVRIVARGDALLSPEVTRRVIARFSAPAVTGPTRRPSELT 175 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +RE L L G ++ EIA +L L TV ++ KL+ +R A+ A G + Sbjct: 176 DREFEVLSLLAKGASNAEIARQLVLGETTVKTHVSRILTKLNLRDRTHAVVFAYENGIVT 235 >gi|332668435|ref|YP_004451223.1| LuxR family two component transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332337249|gb|AEE54350.1| two component transcriptional regulator, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 207 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLA 185 +GYV+ + L + A G Y + + + SS LT RE L L Sbjct: 97 GASGYVLKNVDKEELTEAIRQVAAGRIYFSMEAAAAITGQSSSPVVPILTSREKEVLALI 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G T++EIA+ L +S TV+++ + K N I AI G I Sbjct: 157 AEGLTNKEIADHLFISPLTVDSHRKNLLAKFAVKNTASLIKLAIEHGVIV 206 >gi|312200532|ref|YP_004020593.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231868|gb|ADP84723.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 214 Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 + GY++ +E +A + A G +V+ F + + LT+ Sbjct: 93 MRAGARGYLLKGAERQEIARSLRAVAAGEVVFSAAIASRVLAWFATGGRSALAPFPELTD 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L G T+ IA +L LS TV ++ + KL +R +A+A+A G Sbjct: 153 REREILDLVARGLTNPAIARRLFLSDKTVRNHVSNVFAKLQVADRAEAVARARDAGL 209 >gi|307331341|ref|ZP_07610462.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306883019|gb|EFN14084.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 249 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ ++ + A G + L FK +R A L Sbjct: 127 AGATGYLLKEISTDEVSTAIRAVADGQSQISPSMAAKLLTEFKSMIQRTDERRLVPAPRL 186 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 187 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 246 >gi|229035051|ref|ZP_04188998.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1271] gi|228728236|gb|EEL79265.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1271] Length = 215 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K ++ Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANTLLSQTLPVEEKEEESSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|226309987|ref|YP_002769881.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226092935|dbj|BAH41377.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 218 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--L 174 L GY++ ++ L L + G Y +I +FL++ K A+ L Sbjct: 96 LQAGAAGYILKSAPDLDLITAIRSVNQGMAYLYPSATKSLIEEFLQMVKNGEEQAKYDIL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L L G++++EIAE+L +SV TV ++ KL R + AI+ G++ Sbjct: 156 TDREKEVLVLIAKGFSNKEIAEQLTVSVKTVESHKAHIMEKLHLRTRPDLVRYAIKKGWL 215 >gi|163847185|ref|YP_001635229.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525026|ref|YP_002569497.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668474|gb|ABY34840.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448905|gb|ACM53171.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 246 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---------YQVITDFLELFKKRSSAA--- 171 L Y + LA+ + AHG +V + L F+ Sbjct: 102 LRAGAAAYRSKDIKPAALADILRRVAHGEYVINDVLLEEPRVASRILSQFRNLPEVQMLV 161 Query: 172 --------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ERE L+ G +++EIA+ LG+S TV ++ S KL +R Q Sbjct: 162 GDPSIQVFTPLSEREIEVLERIAAGNSNKEIADALGISTQTVKNHISSILRKLSLNDRTQ 221 Query: 224 AIAKAIRFGYI 234 A+ A+R G+I Sbjct: 222 AVIFALRRGWI 232 >gi|322513935|ref|ZP_08067011.1| nitrate/nitrite response regulator protein NarL [Actinobacillus ureae ATCC 25976] gi|322120230|gb|EFX92185.1| nitrate/nitrite response regulator protein NarL [Actinobacillus ureae ATCC 25976] Length = 209 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 2/105 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSC 181 + +GY++ S+ L + A G T L +R LT+RE Sbjct: 97 MDAGVDGYLLKDSDTADLVENIRKAAKGEMVLSETVQQHLLDRRPENDPLSVLTDRERDV 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LQ G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 157 LQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|42781357|ref|NP_978604.1| LuxR family DNA-binding response regulator [Bacillus cereus ATCC 10987] gi|42737279|gb|AAS41212.1| DNA-binding response regulator, LuxR family [Bacillus cereus ATCC 10987] Length = 211 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V L + K++ + LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAVHEGNTNFHPKVTPALLGRSVVKKEKENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+ G +++EIA L ++ TV ++ + KL+ +R QA A+++G I Sbjct: 155 EQEVLREIAQGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYGVI 211 >gi|30265432|ref|NP_847809.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47530989|ref|YP_022338.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49188248|ref|YP_031501.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49481286|ref|YP_039401.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145220|ref|YP_086677.1| response regulator [Bacillus cereus E33L] gi|65317392|ref|ZP_00390351.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|118480442|ref|YP_897593.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|165871317|ref|ZP_02215966.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167635732|ref|ZP_02394042.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|167640431|ref|ZP_02398695.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|170688212|ref|ZP_02879423.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|170708051|ref|ZP_02898499.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|177651955|ref|ZP_02934538.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190568889|ref|ZP_03021791.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|196036150|ref|ZP_03103550.1| DNA-binding response regulator [Bacillus cereus W] gi|196041030|ref|ZP_03108327.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196045422|ref|ZP_03112653.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|218906592|ref|YP_002454426.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225867394|ref|YP_002752772.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227818179|ref|YP_002818188.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228918025|ref|ZP_04081555.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930420|ref|ZP_04093421.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936698|ref|ZP_04099489.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949137|ref|ZP_04111407.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124916|ref|ZP_04254092.1| Two component transcriptional regulator, LuxR [Bacillus cereus 95/8201] gi|229187641|ref|ZP_04314778.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC 6E1] gi|229603380|ref|YP_002869624.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|254687146|ref|ZP_05151004.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254724071|ref|ZP_05185856.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254735533|ref|ZP_05193240.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254742202|ref|ZP_05199889.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254755887|ref|ZP_05207919.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254761599|ref|ZP_05213619.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|301056878|ref|YP_003795089.1| DNA-binding response regulator [Bacillus anthracis CI] gi|30260110|gb|AAP29295.1| DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47506137|gb|AAT34813.1| DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49182175|gb|AAT57551.1| DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49332842|gb|AAT63488.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978689|gb|AAU20239.1| response regulator [Bacillus cereus E33L] gi|118419667|gb|ABK88086.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|164712984|gb|EDR18512.1| DNA-binding response regulator [Bacillus anthracis str. A0488] gi|167511651|gb|EDR87033.1| DNA-binding response regulator [Bacillus anthracis str. A0193] gi|167528841|gb|EDR91598.1| DNA-binding response regulator [Bacillus anthracis str. A0442] gi|170127024|gb|EDS95903.1| DNA-binding response regulator [Bacillus anthracis str. A0389] gi|170667905|gb|EDT18657.1| DNA-binding response regulator [Bacillus anthracis str. A0465] gi|172082659|gb|EDT67723.1| DNA-binding response regulator [Bacillus anthracis str. A0174] gi|190559956|gb|EDV13939.1| DNA-binding response regulator [Bacillus anthracis Tsiankovskii-I] gi|195991317|gb|EDX55285.1| DNA-binding response regulator [Bacillus cereus W] gi|196023629|gb|EDX62305.1| DNA-binding response regulator [Bacillus cereus 03BB108] gi|196028198|gb|EDX66808.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|218537324|gb|ACK89722.1| DNA-binding response regulator [Bacillus cereus AH820] gi|225787376|gb|ACO27593.1| DNA-binding response regulator [Bacillus cereus 03BB102] gi|227004175|gb|ACP13918.1| DNA-binding response regulator [Bacillus anthracis str. CDC 684] gi|228595795|gb|EEK53478.1| Two component transcriptional regulator, LuxR [Bacillus cereus BGSC 6E1] gi|228658546|gb|EEL14210.1| Two component transcriptional regulator, LuxR [Bacillus cereus 95/8201] gi|228810578|gb|EEM56929.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228822907|gb|EEM68748.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829267|gb|EEM74903.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841613|gb|EEM86727.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229267788|gb|ACQ49425.1| DNA-binding response regulator [Bacillus anthracis str. A0248] gi|300379047|gb|ADK07951.1| DNA-binding response regulator [Bacillus cereus biovar anthracis str. CI] Length = 215 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K + Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|324329359|gb|ADY24619.1| DNA-binding response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 215 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K + Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|321313453|ref|YP_004205740.1| two-component response regulator YxjM [Bacillus subtilis BSn5] gi|320019727|gb|ADV94713.1| two-component response regulator (YxjM) [Bacillus subtilis BSn5] Length = 218 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA--ARNLTE 176 GY++ + L + + A G ++I++ ++ A T+ Sbjct: 100 AGAVGYLLKDTLPEELIDAIRAAARGEAIFRTVTAAKIISETFRAKQQPHPEELAEPFTK 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQ G +E+IAEKL +S TV ++ K +A +R QA+ AIR G + Sbjct: 160 RELEVLQQMAYGLRNEDIAEKLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217 >gi|228914112|ref|ZP_04077732.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229155107|ref|ZP_04283220.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342] gi|228628392|gb|EEK85106.1| hypothetical protein bcere0010_13000 [Bacillus cereus ATCC 4342] gi|228845565|gb|EEM90596.1| hypothetical protein bthur0012_13470 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 204 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK LTERE+ Sbjct: 90 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHEELTERESE 149 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 150 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 200 >gi|134098288|ref|YP_001103949.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004292|ref|ZP_06562265.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910911|emb|CAM01024.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 225 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L +G+++ + L V + A G V +E F + ++ Sbjct: 99 LRAGASGFLLKDALPADLIAGVRVVAGGQALLAPTVTRRLIEHFSRTAAPPITNPPRLDV 158 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G ++ EIA+ L ++ TV +++ KL +R+QA+ A G Sbjct: 159 LTDREREVLVHVARGLSNTEIADALFIAEQTVKSHVSRILGKLGVRDRVQAVVVAYETGL 218 Query: 234 IC 235 + Sbjct: 219 VS 220 >gi|309779367|ref|ZP_07674129.1| autoinducer-binding transcriptional regulator BmaR5 [Ralstonia sp. 5_7_47FAA] gi|308921925|gb|EFP67560.1| autoinducer-binding transcriptional regulator BmaR5 [Ralstonia sp. 5_7_47FAA] Length = 250 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 81/240 (33%), Gaps = 30/240 (12%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFP-RRQQLICELHNYDLDSGDIPNIL 68 + + L++ + +Q + F P R +C P Sbjct: 22 QLNGLRDADAVIRSLQPAVALLGFDYCAYALRAAIPITRFNTLC--------WSTYPEPW 73 Query: 69 IETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 E Y D L + P++W I + + + GL G + Sbjct: 74 CEHYRVHGYLAIDPVLQFGQRCVKPVLWSGIATA----DARFWADARQHGLN--HGWSHT 127 Query: 122 VRLGFHKNGYVIF-------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 +R G T + L ++ +I + I+ + K AA L Sbjct: 128 IRDHTGIFGTFSLVRRATPITEDELAVSEPEMIWLSQRAHGSISTLMA-EKVLPDAATRL 186 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E E L +G T+ E+A L ++ VN ++ +A KL+A N+ A+ KA G I Sbjct: 187 KEVERQTLHWTAEGKTAAEVAAILEMTERNVNFHIRNAVTKLNAANKTHAVVKAALLGLI 246 >gi|294630527|ref|ZP_06709087.1| two-component system response regulator [Streptomyces sp. e14] gi|292833860|gb|EFF92209.1| two-component system response regulator [Streptomyces sp. e14] Length = 206 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTER 177 L +G+V+ +A V I A G A + + L + LTER Sbjct: 84 LSAGASGFVLKRRPVRQIAEAVRIVAAGETILFPAALRQMVTARPLSSAEALPKAALTER 143 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L+L G ++ EIA L +S+ TV ++G+ KL A NR A+ A G + Sbjct: 144 EEAVLRLMATGQSNPEIARALTVSLETVKTHVGNVLSKLGAQNRTHAVVIAYESGLV 200 >gi|298242057|ref|ZP_06965864.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555111|gb|EFH88975.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 219 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 8/122 (6%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR 172 FP L Y++ + L G +V+ + + + Sbjct: 96 FPA-LRAGALSYILKSIPPDELVEVARKAVRGESVLHPRVAARVVRELRGTRSEAPNPFV 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+L G ++ EIA +L +S TV +L + KL ++R QA A + G Sbjct: 155 ELSERELEVLRLIAGGLSNTEIAARLTISEKTVKGHLSNILSKLHLMDRTQAAVFAWQQG 214 Query: 233 YI 234 I Sbjct: 215 LI 216 >gi|228951917|ref|ZP_04114015.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228807840|gb|EEM54361.1| hypothetical protein bthur0006_13310 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 206 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK +LTERE Sbjct: 92 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHDDLTEREFE 151 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 152 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 202 >gi|254382255|ref|ZP_04997616.1| two component system DNA binding response regulator [Streptomyces sp. Mg1] gi|194341161|gb|EDX22127.1| two component system DNA binding response regulator [Streptomyces sp. Mg1] Length = 210 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 51/109 (46%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + LA V A G L L + + A LT+RE LQL Sbjct: 99 AGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLV 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++++I+++L LS TV ++L KL +R A+A A I Sbjct: 159 ADGLSNQQISKELFLSQATVKSHLVHIYAKLGVDSRTSAVATAATRRLI 207 >gi|258654718|ref|YP_003203874.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258557943|gb|ACV80885.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 207 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + L V A G L ++ + +L+ RE L+ Sbjct: 97 AGASGYLLKGAPPDELLLAVRSAAAGESALAPPIASRLLERLRTPQTSLSPREIEVLERV 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA +L ++ TV ++L KL +R A++ A G + Sbjct: 157 AAGRSNGEIARELVITEQTVKSHLVHIYTKLGVSSRTAAVSLARERGIL 205 >gi|228911248|ref|ZP_04075053.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 200] gi|228848424|gb|EEM93273.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis IBL 200] Length = 215 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANTLLSQTLPVEEKEEEPFLQVGV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|1498492|gb|AAC45136.1| ORF1; homolog to response regulator of a putative signal transduction system [Streptomyces lividans] Length = 225 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L +G+++ L V + G + +E + A N Sbjct: 97 LAAGASGFLLKDVTPEHLVAAVRLVRTGDALLAPAITRRLVERHAHTTPPAPNTTAHRDL 156 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE LQL G ++ E+AE+L LS TV ++G KL +R+QA+ A Sbjct: 157 QTLTPRELEVLQLLAQGLSNAELAERLYLSETTVKTHVGRILAKLQLRDRVQAVVTAYET 216 Query: 232 GYIC 235 G + Sbjct: 217 GLVS 220 >gi|311069822|ref|YP_003974745.1| two-component response regulator YvqE [Bacillus atrophaeus 1942] gi|310870339|gb|ADP33814.1| two-component response regulator [YvqE] responding to cell wall stress [Bacillus atrophaeus 1942] Length = 211 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 9/123 (7%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA 171 +PV + Y++ TS+ +A+ + + G +V++ + Sbjct: 90 VYPV-IEAGALSYLLKTSKAGEIADAIRAASKGEPKLESKVAGKVLSRLRH-SNDSALPH 147 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L +G T++EI E+L +++ TV ++ + KL+ +R QA A R Sbjct: 148 ETLTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHVTNILSKLEVADRTQAAVYAHRN 207 Query: 232 GYI 234 + Sbjct: 208 KLV 210 >gi|291298154|ref|YP_003509432.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567374|gb|ADD40339.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 216 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 6/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTER 177 L NG+V+ + +A+ + A G + + LT R Sbjct: 96 LRAGANGFVLKRAPATEIAHAIRTVASGDALLFPEAIRALAAARPAPPGNPHGPIALTAR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L+L G ++++IA L +S+ T+ ++GS KL A NR QA+ A G++ Sbjct: 156 EAEVLRLMATGLSNQDIATHLTVSLETIKTHVGSVLTKLGAANRTQAVIIAYESGFVT 213 >gi|226356417|ref|YP_002786157.1| DNA-binding response regulator [Deinococcus deserti VCD115] gi|226318407|gb|ACO46403.1| putative DNA-binding response regulator [Deinococcus deserti VCD115] Length = 194 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 11/112 (9%) Query: 125 GFHKNGYVIFTSEFLMLANEVI-IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GYV ++ LA +V I H E+ + LT RE+ L Sbjct: 93 SAGARGYVSKETDPESLARQVRDIVMH----------PEIDRLPHVDVPRLTPRESEVLP 142 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L GY+++EIA+ LG+S TV +L KLDA +R +A+++A G + Sbjct: 143 LLALGYSNKEIAKNLGVSPDTVKDHLARLYSKLDAGDRTEAVSRARSIGLLS 194 >gi|313500551|gb|ADR61917.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 235 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 66/188 (35%), Gaps = 17/188 (9%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 + P+ IE Y D +S +P++W + + + + Q Sbjct: 53 YLYSNYPSEWIERYQRDDFYKQDPAANLSHSSTMPVLWT----DELYKEAPQFREM-ACL 107 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--- 168 G + H + + + + G+ + + + Sbjct: 108 HGLRHGWTQSLHDQQHNESQISVARPNGPIDEVELYDKAGSVQWLCHALHAVLGEHHLNA 167 Query: 169 --SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ERE L+ + G T+ ++A L LS TVN ++ S K +A N+ AIA Sbjct: 168 LCPPQPKMSERELEVLKWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAIA 227 Query: 227 KAIRFGYI 234 A G+I Sbjct: 228 IAALRGWI 235 >gi|297624725|ref|YP_003706159.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165905|gb|ADI15616.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 210 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS--AARNL 174 L GY++ L V A G +V+ + + S L Sbjct: 91 LRAGAKGYLLKDVSLEQLVTAVRTLAAGGTLVQPAVTERVLRGLSGVPRDYPSLETPDPL 150 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE ++L GY++ EIA L +S TV ++ S KL +R +A+ KA+ GY+ Sbjct: 151 TGREREVVRLMAGGYSNREIALALHISQGTVKNHVSSVLSKLGVRDRTRAVLKALELGYV 210 >gi|294676640|ref|YP_003577255.1| LuxR family autoinducer-binding transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294475460|gb|ADE84848.1| autoinducer-binding transcriptional regulator, LuxR family [Rhodobacter capsulatus SB 1003] Length = 261 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 75/230 (32%), Gaps = 27/230 (11%) Query: 30 ARNFALYTINSALDFPRRQQ-------LICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82 AR F + R+ + + N D D + D + Sbjct: 34 ARGFGASALIYDYTPRHRETDGTVTAPAVMMVRNLDPGMIDYWCGRGYAHVDPVQAVAVN 93 Query: 83 GLLPIIWQSIQEETVIESS-----GQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV----I 133 + P +W E + +S + V GI P+ L GYV + Sbjct: 94 SVAPFVWSYDAEAGDLSASFLTRNSRPVVEFISASGFVNGITVPIHLPGG--GYVTVNGL 151 Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLEL---------FKKRSSAARNLTERETSCLQL 184 + A G ++ + L+ RE CL Sbjct: 152 WNGPGRAFAAVAAQVLPGFALMAQAFQNDIGAPAPADPAPPQPQPRTPALSARERECLDH 211 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G +++E + + SV TV +L +A KL A NR A+A+A+R G I Sbjct: 212 AAQGRSAKETSRLIERSVPTVVMHLNAAVRKLGARNRSHAVAEAVRRGLI 261 >gi|291443382|ref|ZP_06582772.1| two-component system [Streptomyces roseosporus NRRL 15998] gi|291346329|gb|EFE73233.1| two-component system [Streptomyces roseosporus NRRL 15998] Length = 207 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQ 183 +GY++ LA+ + A G T L + L+ERET L+ Sbjct: 97 AGASGYLLKDLGRGELADAIRAAARGETVLAPTVATRLVDRLRGVPELPRLSERETQVLR 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G T+ EI KL + TV +L KL +R A+ A+R G + Sbjct: 157 LVAEGCTNAEIGRKLFIGESTVKTHLLRIFGKLGVSDRTAAVTGAMRHGLL 207 >gi|228985356|ref|ZP_04145515.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228774309|gb|EEM22716.1| DNA-binding response regulator [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 211 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L ++ G ++ L + K++ + LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIVAVHQGNANFHPKITPALLGRSAVKKEKENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EKEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209 >gi|227547703|ref|ZP_03977752.1| possible response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227080229|gb|EEI18192.1| possible response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 212 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G L + S+ +LT RE LQL Sbjct: 104 AGAVGYLLKDAPPAELVAAVRSAARGDAALSQVVRTRLETRESTPRFSLTPRELEVLQLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI +L LS TV ++L KL +R A+A A G + Sbjct: 164 AGGSSNREIGHELMLSEATVKSHLVHIYDKLGVRSRTSAVASAREQGML 212 >gi|73662218|ref|YP_300999.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|88952438|sp|Q49YS9|VRAR_STAS1 RecName: Full=Response regulator protein vraR gi|72494733|dbj|BAE18054.1| two-component response regulator [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 209 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ T+ +A + + +V+ K+R+ LTERE Sbjct: 95 LDSGVDSYILKTTSASDIAEAIRKTYNNESVFEAEVLVKMRNRMKQRAELYEMLTEREME 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY+++EIA +++ TV ++ + KL+ +R QA+ A + I Sbjct: 155 ILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLI 208 >gi|291299253|ref|YP_003510531.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568473|gb|ADD41438.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 228 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNL-- 174 L +G+++ L + + + A+G +++ +F+ + + A+ +L Sbjct: 99 LRAGASGFLLKDVPPTQLLHAIRVVANGESLLAPSVTRRLVAEFVARPHESTVASTDLAA 158 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE L L G ++ EIAE+L LS+ TV ++G KL A +R Q + A G Sbjct: 159 VTEREREVLTLVARGLSNTEIAERLHLSLATVKTHIGHLLRKLTARDRAQLVIAAYESGL 218 Query: 234 IC 235 + Sbjct: 219 VT 220 >gi|269796573|ref|YP_003316028.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269098758|gb|ACZ23194.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 217 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLEL--FKKRSSAARNL 174 L +G+++ + L V + A G + VI F + R L Sbjct: 94 LRAGVSGFLLKVAPSHELIEAVSLAAQGKAHLHADVTGIVIDRFTSAPETRLRDDLVGAL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L +G ++ EIAE L LS TV +++ K A +R QA+ A G I Sbjct: 154 TDREREVLVALAEGQSNTEIAESLHLSETTVKSHVSHIFTKTGARDRAQAVGIAYESGLI 213 Query: 235 C 235 Sbjct: 214 T 214 >gi|229118901|ref|ZP_04248248.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-3] gi|228664557|gb|EEL20052.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock1-3] Length = 215 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-----------ELFKKRSSAAR 172 L +GY++ E L + G Q+ D E ++ Sbjct: 95 LKAGASGYILKDVEPDQLVEAIRSAYKGNI-QLHPDIASTLISQTLPQEERAEEHFVHVD 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 154 VLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNG 213 Query: 233 YI 234 + Sbjct: 214 IV 215 >gi|32035561|ref|ZP_00135492.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207547|ref|YP_001052772.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae L20] gi|126096339|gb|ABN73167.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 209 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 2/105 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSC 181 + +GY++ S+ L + A G + L +R LT+RE Sbjct: 97 MDAGVDGYLLKDSDTAELVENIRKAAQGETVLSDSVRQHLLDRRPENDPLSVLTDRERDV 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LQ G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 157 LQWIATGMSNKQIASQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|288916721|ref|ZP_06411095.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288351795|gb|EFC85998.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 237 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA------RNL 174 L +G+++ L V + G + +E F + L Sbjct: 107 LAAGASGFLLKDVSPEQLVGAVRLVRLGDALLAPAITRRLVERFARTDRGTTLHRELSTL 166 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G ++ E+A +L LS TV ++ KL +R QA+ A G + Sbjct: 167 TPREVEVLQLLATGLSNAELAARLVLSEATVKTHVARIMAKLGLRDRAQAVVVAYETGLV 226 Query: 235 C 235 Sbjct: 227 T 227 >gi|239939951|ref|ZP_04691888.1| two component LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239986435|ref|ZP_04707099.1| two component LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] Length = 206 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSCLQ 183 +GY++ LA+ + A G T L + L+ERET L+ Sbjct: 96 AGASGYLLKDLGRGELADAIRAAARGETVLAPTVATRLVDRLRGVPELPRLSERETQVLR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G T+ EI KL + TV +L KL +R A+ A+R G + Sbjct: 156 LVAEGCTNAEIGRKLFIGESTVKTHLLRIFGKLGVSDRTAAVTGAMRHGLL 206 >gi|170719977|ref|YP_001747665.1| LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169757980|gb|ACA71296.1| transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 236 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 16/187 (8%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 + P IE Y D ++ P++W + S Sbjct: 53 YLYSNYPLAWIERYQRDEFYKQDPAAALSHTSTEPVLWTD-----ELYSEAPDFREQACK 107 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG----ACYQVITDFLELFKKR 167 G + H V F + + + G C+ + E + Sbjct: 108 HGLRHGWTQSLHDLRHNETQVSVARPFGKIDIHELYDKAGQVQWLCHTLHDTICEHHLAK 167 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S+ +++RE L+ + G T+ ++A L LS TVN ++ S K +A N+ A+A Sbjct: 168 LSSPLKMSDRELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNASNKAGAVAI 227 Query: 228 AIRFGYI 234 A+ G I Sbjct: 228 AMMRGLI 234 >gi|30019588|ref|NP_831219.1| two-component response regulator yvqC [Bacillus cereus ATCC 14579] gi|206968465|ref|ZP_03229421.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218232967|ref|YP_002366221.1| DNA-binding response regulator [Bacillus cereus B4264] gi|296502111|ref|YP_003663811.1| two-component response regulator yvqC [Bacillus thuringiensis BMB171] gi|29895132|gb|AAP08420.1| Two-component response regulator yvqC [Bacillus cereus ATCC 14579] gi|206737385|gb|EDZ54532.1| DNA-binding response regulator [Bacillus cereus AH1134] gi|218160924|gb|ACK60916.1| DNA-binding response regulator [Bacillus cereus B4264] gi|296323163|gb|ADH06091.1| two-component response regulator yvqC [Bacillus thuringiensis BMB171] gi|326939160|gb|AEA15056.1| two-component response regulator yvqC [Bacillus thuringiensis serovar chinensis CT-43] Length = 210 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK +LTERE Sbjct: 96 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHDDLTEREFE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 156 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 206 >gi|291300052|ref|YP_003511330.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569272|gb|ADD42237.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKR---SSAARN 173 L +G+++ S L V + A G ++I +F K S+ + Sbjct: 98 LRIGASGFLLKDSPPDDLTAAVRVIAAGEALLAPSVTRRLIAEFARTRPKATATSATLAS 157 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L L G ++ EIA +L ++ TV ++G KL +R QA+ A G Sbjct: 158 LTDRETEILTLIARGLSNREIAGRLVVAEQTVKTHVGRIFAKLGLRDRAQAVVCAYETGL 217 Query: 234 IC 235 + Sbjct: 218 VT 219 >gi|158333709|ref|YP_001514881.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158303950|gb|ABW25567.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 209 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 5/107 (4%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSC 181 GY++ + LA + G + F ++ + LT RET Sbjct: 97 GAKGYLLKDTPSDELAEAIRAVHKGYTHFGPGLFEKMITATPTVEEPPELAELTPRETEV 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L L +G ++ EIAE L +S TV ++ S +L+ +R QA A Sbjct: 157 LALIAEGQSNREIAEALYISERTVKNHVNSILKRLNVRDRTQAAILA 203 >gi|75908249|ref|YP_322545.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75701974|gb|ABA21650.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 219 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 10/115 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN------- 173 L GY++ + LA + G ++ L F+ + Sbjct: 94 LQNGAMGYLLKDTPSEELAVAIRAVEKGYTQLGPGIVKKLLVQFQSTPNHTPPAPTNLAD 153 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+L G ++EIA++L +S TV ++ + +L +R QA A Sbjct: 154 LTPREKEVLRLIAAGANNKEIAQQLYISEGTVKNHVTNILNRLSLRDRTQAAIIA 208 >gi|332799645|ref|YP_004461144.1| LuxR family two component transcriptional regulator [Tepidanaerobacter sp. Re1] gi|332697380|gb|AEE91837.1| two component transcriptional regulator, LuxR family [Tepidanaerobacter sp. Re1] Length = 215 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA--RNL 174 L +GYV+ E L V + G Y ++ ++ L + S+ +NL Sbjct: 96 LKLGISGYVLKDIEPQGLIEAVRSASRGETYIQPNLTRALVAEYNRLTQPVSNNDVRKNL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L G ++ EI+ LG+S TV ++ S KL+ ++R QA AI+ + Sbjct: 156 TAREKEVLADIAKGMSNREISIDLGISEKTVKNHVSSILRKLNLMDRTQAAVFAIKNRLV 215 >gi|300784747|ref|YP_003765038.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794261|gb|ADJ44636.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 217 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------LTE 176 L +G+++ + + + G L + + A LTE Sbjct: 96 LVAGASGFLLKRARPEEIVAAIRTVVAGESLLFPAAIRRLAAQHAPAPAGDGLASAGLTE 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L G ++ EIA +L + V TV ++G+ KL A +R QA+ +A G++ Sbjct: 156 RERDVLRLVAAGLSNVEIASELYVGVQTVKTHVGNVLAKLGARDRTQAVIRAYDSGFVT 214 >gi|289768783|ref|ZP_06528161.1| two-component system response regulator [Streptomyces lividans TK24] gi|289698982|gb|EFD66411.1| two-component system response regulator [Streptomyces lividans TK24] Length = 332 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS--AARNL 174 L G+++ + F L + V + A G ++I +F+ R AA +L Sbjct: 201 LAAGAGGFLLKDATFPELLHAVRVVAGGNALLSPEITKRLIAEFVHARGSRLPVPAAGDL 260 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RET L L G ++ EIA +L ++ HTV ++ KL+ +R QA+ A G + Sbjct: 261 TARETEVLTLIARGLSNAEIAGRLTITDHTVKTHINRLFAKLELRDRAQAVIVAYELGLV 320 >gi|302544912|ref|ZP_07297254.1| nitrate/nitrite response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462530|gb|EFL25623.1| nitrate/nitrite response regulator [Streptomyces himastatinicus ATCC 53653] Length = 249 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ ++ + A G + L FK +R A L Sbjct: 127 AGATGYLLKEISTDEVSTAIRAVADGQSQISPSMAAKLLTEFKSMIQRTDERRLVPAPRL 186 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 187 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 246 >gi|251771224|gb|EES51805.1| two component transcriptional regulator, LuxR family [Leptospirillum ferrodiazotrophum] Length = 219 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 39/116 (33%), Positives = 54/116 (46%), Gaps = 7/116 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTERE 178 +GY + SE L + A G+ Y V L +R L+ RE Sbjct: 105 SSGADGYCLKDSELDSLILGIQAVALGSLY-VDPRIAHLAIRRILSSPAPETETPLSARE 163 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T L+L +G ++ +IA LG+SV TV A++ S VKL A R A KA R G+I Sbjct: 164 TEVLRLLAEGQSNRDIAVALGISVSTVKAHIQSILVKLSAATRADAAVKAFRKGWI 219 >gi|148241069|ref|YP_001220570.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146411445|gb|ABQ39898.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 243 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 16/189 (8%) Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 P Y D L + +W + + + Sbjct: 54 SSYPKSWTSHYFREGYDNIDPVLQEPRNTSRMFLWDGREARSAKSPKERRLFDDALSFKI 113 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLML-------ANEVIIEAHGACYQVITDFLELFKKR 167 G+ + ++ ++ L ++ ++E G Y + + Sbjct: 114 RTGLTVRIPSSQNQFAAFTLAADDRSLGLDRFIETSQDMLEMVGLTYHAHVSAARIGRTP 173 Query: 168 SSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT+RE CL DG T ++IAE LG+S V +L +A L A+ A+ Sbjct: 174 PDGQQGSPLTQRERQCLAWISDGKTMQDIAELLGVSPRGVKFHLDNARRNLAALTLPHAV 233 Query: 226 AKAIRFGYI 234 A A R G + Sbjct: 234 ALAFRQGLL 242 >gi|330470343|ref|YP_004408086.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328813314|gb|AEB47486.1| two component transcriptional regulator, LuxR family protein [Verrucosispora maris AB-18-032] Length = 213 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 1/111 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L V A G L + R+ A L++RE L L Sbjct: 99 AGATGYLLKDAPRDELVRAVRAAARGESVLSPAVAGRLMGRLRAPAEEPLSQRELEVLTL 158 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G T+ E A +L +S TV +L KL +R A+A A G + Sbjct: 159 VARGSTNREAAAQLFISEATVKTHLLHVYAKLGVNDRAAAVAVAYDRGLLT 209 >gi|269792412|ref|YP_003317316.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100047|gb|ACZ19034.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 227 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 45/115 (39%), Gaps = 6/115 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA---ARNLTERE 178 + YV+ S L + + G Y +V L F +R LT RE Sbjct: 97 SVGIDAYVLKASGMAELLSAIRSVYRGHSYVDPKVAGKLLSTFNRRREERDLLSRLTPRE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G + EIA K+ LS TV ++ KLD V+R QA A + G Sbjct: 157 MEVLYWISQGLNNGEIARKMVLSEKTVKNHVSHILKKLDLVDRTQAAVFAWKRGL 211 >gi|229108996|ref|ZP_04238597.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15] gi|228674465|gb|EEL29708.1| hypothetical protein bcere0018_12690 [Bacillus cereus Rock1-15] Length = 196 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK +LTERE Sbjct: 82 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHDDLTEREFE 141 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 142 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 192 >gi|111020952|ref|YP_703924.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110820482|gb|ABG95766.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 207 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 46/110 (41%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ + L V + G +L + A +L+ RE L L Sbjct: 96 AAGAAGYLLKDTPPPELLAAVRAASAGDSVLSPAVASKLMTRVRRPATSLSPREIQVLTL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI ++L LS TV ++L KL +R AIA+A G I Sbjct: 156 VAAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSAIARARELGTI 205 >gi|119715261|ref|YP_922226.1| response regulator receiver [Nocardioides sp. JS614] gi|119535922|gb|ABL80539.1| response regulator receiver [Nocardioides sp. JS614] Length = 218 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA-RNLT 175 LG +G+V+ L V A G +VI +F L ++ AA LT Sbjct: 95 LGAGASGFVLKDDPPEQLIAAVRTIADGDALLSPTVTRRVIREFTRLRRQPPPAAVATLT 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE +L G ++ EI +L +S TV ++ KLD +R QAI A + G Sbjct: 155 GRELEVFRLITQGLSNAEIGRELFISDTTVKTHVTRLFQKLDLRDRAQAIVLAYQTGI 212 >gi|312138632|ref|YP_004005968.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311887971|emb|CBH47283.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 205 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 47/110 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + +L V A G L+++ L+ RE L L Sbjct: 96 AGASGYLLKDTAPEVLIESVFAAARGDTVLDPDVAQRLYRRMQQPRVELSGREVEVLDLV 155 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G ++ IA++L +S TV ++L A KL +R A+A A G I Sbjct: 156 AQGLSNRAIAKQLFVSEATVKSHLVHAFTKLGVDSRTAAVAAARERGLIT 205 >gi|299821874|ref|ZP_07053762.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299817539|gb|EFI84775.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 241 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS------- 169 L GY++ + L + + G Y ++I ++ L S+ Sbjct: 108 LKTGAVGYLLKEMDANELIEAIKVVYKGGAYIHPKAAIKLIREYRNLASSSSAQGNYGYR 167 Query: 170 ------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE LQL DG ++ I E L +S TV ++ S K+ +R Q Sbjct: 168 QPEVNMPLHLLTHRECEVLQLLTDGKSNRSIGEALFISEKTVKNHVSSILQKMKVNDRTQ 227 Query: 224 AIAKAIRFGYI 234 A+ AI+ G++ Sbjct: 228 AVVTAIKHGWV 238 >gi|327440878|dbj|BAK17243.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Solibacillus silvestris StLB046] Length = 209 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA-ARNLTERET 179 L Y++ TS +A+ + G + T + + + A +LT+RE Sbjct: 94 LEAGAVSYILKTSNAKQIADAIRKTMDGETVLEPEATTRVMARMRGTAPALHNHLTDREM 153 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++EIAE+L +++ TV ++ + KL+ +R QA+ A + G + Sbjct: 154 EVLLCMARGLANQEIAEELFIALKTVKTHVSNILSKLEVQDRTQAVVYAFQNGLV 208 >gi|228938652|ref|ZP_04101257.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228957814|ref|ZP_04119555.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228971533|ref|ZP_04132157.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978144|ref|ZP_04138522.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407] gi|229126854|ref|ZP_04255866.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4] gi|229144139|ref|ZP_04272554.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24] gi|229149739|ref|ZP_04277969.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550] gi|229177946|ref|ZP_04305318.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W] gi|229189620|ref|ZP_04316635.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876] gi|228593884|gb|EEK51688.1| hypothetical protein bcere0002_12980 [Bacillus cereus ATCC 10876] gi|228605434|gb|EEK62883.1| hypothetical protein bcere0005_13090 [Bacillus cereus 172560W] gi|228633770|gb|EEK90369.1| hypothetical protein bcere0011_12970 [Bacillus cereus m1550] gi|228639358|gb|EEK95773.1| hypothetical protein bcere0012_13030 [Bacillus cereus BDRD-ST24] gi|228656794|gb|EEL12620.1| hypothetical protein bcere0015_13110 [Bacillus cereus BDRD-Cer4] gi|228781616|gb|EEM29816.1| hypothetical protein bthur0002_13470 [Bacillus thuringiensis Bt407] gi|228788192|gb|EEM36147.1| hypothetical protein bthur0003_13110 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228801896|gb|EEM48772.1| hypothetical protein bthur0005_13270 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228821028|gb|EEM67048.1| hypothetical protein bthur0008_13160 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 206 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK +LTERE Sbjct: 92 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHDDLTEREFE 151 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 152 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 202 >gi|269124386|ref|YP_003297756.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268309344|gb|ACY95718.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 222 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L G+++ +E L V + A G ++I +F K + R L Sbjct: 96 LRGGACGFLVKDTEPQELIRAVRVAARGDALISPSVTRRLIAEFTGRVKAPAPDPRLNAL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE ++L G +++EIA +L LS T ++ KL +R Q + A G + Sbjct: 156 TEREREVMRLVAAGLSNDEIAGRLVLSPATAKTHVSRIMSKLGVRDRSQLVVLAYESGMV 215 Query: 235 C 235 Sbjct: 216 S 216 >gi|261406817|ref|YP_003243058.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283280|gb|ACX65251.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 225 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 15/124 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-----------QVITDFLELFKKRSSAARNL 174 +GY++ +E L + + GA Q++T ++ S L Sbjct: 101 AGASGYLLKDTETDELLSGIRAMHRGATLFNSSTAKRALDQILTSGMQEPDSDSPGKDRL 160 Query: 175 ----TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 TERET LQL G + EI+ L +S T ++ KL A++R QA+ AIR Sbjct: 161 LGALTERETEVLQLLAYGKRNHEISAILCISEGTTKTHIHHIMQKLGALDRTQAVVTAIR 220 Query: 231 FGYI 234 + Sbjct: 221 MKLV 224 >gi|190573818|ref|YP_001971663.1| putative LuxR family transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011740|emb|CAQ45360.1| putative LuxR family transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 234 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 77/236 (32%), Gaps = 9/236 (3%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 + + L +++ SL + L I + ++ + L+ ++ E + Sbjct: 4 LVQALLEMERARSLSAVGAVLRGIAAPLGYDRVLVFATGTGLERGTQRVYWIEGDWFGDG 63 Query: 61 SG-DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 S D+ L H P W + V Q+ + G G+ Sbjct: 64 SDTDLAGYLHAC---PVNRHVLDSDAPFFWSK--HQGVRGERYQIVKQPRGE--GLHGLQ 116 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-AARNLTERE 178 PV G + + + ++ A L + + + L+ RE Sbjct: 117 VPVFGTTGLEGAISVAGTSIDASASARLQLAAAATAAFRAARHLVESPAELSGSALSTRE 176 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G EIA LGLS TV +L A +L QA+ A R G I Sbjct: 177 REVLRWVAAGRRQAEIAATLGLSTRTVENHLRHARQRLGVATTAQAVRAANRRGEI 232 >gi|2495419|sp|Q46967|ECHR_ERWCH RecName: Full=Transcriptional activator protein echR gi|1177878|gb|AAA86840.1| EchR [Erwinia chrysanthemi] Length = 250 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 79/229 (34%), Gaps = 21/229 (9%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQL--ICELHNYDLDSGDIPNILIETYGDDFLFHFN 81 IQN + + + + A +++ + + NY + +I + D + Sbjct: 15 IQNYLNRKLKSYGDLKYAYLIMNKKKPTDVVIISNYPSEWVEIYRSNNYQHIDPVILTAI 74 Query: 82 SGLLPIIWQSIQEETVIESSGQLS--VRLEGGLLPFAGIAFPVRLGFHKNGYVIF----- 134 + + P W ++ VI S + S L G F + + + F Sbjct: 75 NKISPFSW---DDDLVISSKLKFSRIFNLSKEYDIVNGYTFVLHDPGNNLATLSFMFEEN 131 Query: 135 -TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LTERETSCLQLA 185 + E + + L+++ S N ++RE L A Sbjct: 132 RSGELEEIVQNNKEKLQMLLISAHEKLTSLYREMSKNKNNSKSQEPNIFSQRENEILYWA 191 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T +EIA LG++ TV ++G+ KL +N AI + I Sbjct: 192 SMGKTYQEIALILGITTSTVKFHIGNVVKKLGVLNAKHAIRLGVEMNLI 240 >gi|320160284|ref|YP_004173508.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994137|dbj|BAJ62908.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 216 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 Y++ L + A G +++ + ++ + LTERE Sbjct: 98 AGALSYLLKDVSAEELGEAIRAAARGEAVLHPQVAARLVKEMRGTPAEKPNPYTALTERE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G ++ EIA L +S TV ++ + KL +R QA A + G I Sbjct: 158 QEVLKCIAQGMSNAEIAAHLVVSEKTVKGHVSNILSKLHLADRTQAAIYAWKEGLI 213 >gi|318061446|ref|ZP_07980167.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318077421|ref|ZP_07984753.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 229 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTERE 178 GY++ + L V A G +++T + L+ RE Sbjct: 107 AGATGYLLKDAPREELFAAVRATADGRSVLAPAVASRLVTSLRAPGADETPPRTPLSARE 166 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ EIA L LS TV +L KL +R A+A G + Sbjct: 167 REVLALVARGTSNREIARALFLSEATVKTHLTHLYAKLGVTDRAAAVATGYERGIL 222 >gi|317125008|ref|YP_004099120.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589096|gb|ADU48393.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 228 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKR-----SSAA 171 L +GY++ L + V G +++ + + K R ++ Sbjct: 97 LRNGAHGYLLKDLRPEQLYDMVRSVMRNETPISPGVAGRLLREIRQAGKPRVTSPAATTE 156 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +++T RE L+L +G +++EIA++L ++ TV ++ +A KL NRIQA A IR Sbjct: 157 QSVTRRELEILRLVAEGLSNKEIAKRLVITEGTVKNHVHNALEKLHMDNRIQAAAYVIRQ 216 Query: 232 GY 233 G Sbjct: 217 GL 218 >gi|302533992|ref|ZP_07286334.1| two-component system response regulator [Streptomyces sp. C] gi|302442887|gb|EFL14703.1| two-component system response regulator [Streptomyces sp. C] Length = 233 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 13/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR------N 173 GY++ ++ L + V A G V+ ++ L + AA Sbjct: 111 GATGYLLKSAGAQELIDAVRRTAAGDPVFTPGLAGLVLGEYRRLATDPAPAAPDVPKAPQ 170 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 171 LTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 230 >gi|227834238|ref|YP_002835945.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262183272|ref|ZP_06042693.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227455254|gb|ACP34007.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 212 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + + L V A G +L + + +LT RE L+L Sbjct: 104 AGAVGYLLKDAPPVELLAAVRSAAEGDSALSPVVADKLMTRVRTPRTSLTPRELEVLKLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI +L LS TV ++L KL +R A+A A G + Sbjct: 164 AAGSSNREIGVELMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 212 >gi|297565492|ref|YP_003684464.1| LuxR family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296849941|gb|ADH62956.1| two component transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 211 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQL 184 GY++ L + AHG L + R+ + +L+ RE L L Sbjct: 98 AGAIGYLLKDVPREELYKAIYASAHGESVLSPPVAARLLGRMRAPSDESLSTRELEVLSL 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA +L +S TV +L KL +R A+ A+ G + Sbjct: 158 VAKGLSNKEIARELKISEATVKTHLLHTFGKLGVDDRTAAVTVALERGIL 207 >gi|190149328|ref|YP_001967853.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262641|ref|ZP_07544271.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914459|gb|ACE60711.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306872064|gb|EFN03778.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 209 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 2/105 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 + +GY++ S+ L + A G + + L + + LT+RE Sbjct: 97 MDAGVDGYLLKDSDTAELVENIRKAAQGETVLSESVKQHLLERRPENDPLSVLTDRERDV 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LQ G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 157 LQWIATGMSNKQIASQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|228942557|ref|ZP_04105092.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975490|ref|ZP_04136045.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982123|ref|ZP_04142415.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis Bt407] gi|228777661|gb|EEM25936.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis Bt407] gi|228784284|gb|EEM32308.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817150|gb|EEM63240.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326943209|gb|AEA19105.1| two-component response regulator yhcZ [Bacillus thuringiensis serovar chinensis CT-43] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K + Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANALLSQTLPVEEKEEEHSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|296161870|ref|ZP_06844671.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] gi|295887889|gb|EFG67706.1| transcriptional regulator, LuxR family [Burkholderia sp. Ch1-1] Length = 262 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 64/198 (32%), Gaps = 13/198 (6%) Query: 47 RQQLICELHN-YDLDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVI 98 R + C ++ P + Y D P W I + Sbjct: 66 RSRSTCARRTALEMIGARYPQEWVRHYQHRDYASTDPVHRAAFLQSAPYRWHDI---IGL 122 Query: 99 ESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-AHGACYQVI 157 + + + AG++ P+ + + + + A+ Q Sbjct: 123 SKAERRLLDEAREAGLPAGLSVPLHQSDGSILLFNLSGPLHSVNDAINSRLAYLISAQFH 182 Query: 158 TDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L S A +L T R+ CL G TS EI E LG S +TV+ ++ A L Sbjct: 183 FELHRLASMPSRRAAHLLTARQLECLTWVARGKTSAEIGEILGRSHYTVDYHIKEAMEAL 242 Query: 217 DAVNRIQAIAKAIRFGYI 234 + +R A A G I Sbjct: 243 NIRSRTAAAVHATVHGII 260 >gi|257057781|ref|YP_003135613.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587653|gb|ACU98786.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 226 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 3/115 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETS 180 L GYV+ +E +A V G + V +LT RE Sbjct: 109 LSAGAAGYVLKDAEPEEVATAVRAAVKGEVHLDAAVARLLARRMASPQVGVTSLTARERD 168 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L G G ++ EIA++L +S T ++ + KL +R QA AIR G + Sbjct: 169 ILVLVGQGLSNREIADRLVISERTARTHVSNVLSKLQLSSRTQAALLAIREGLVS 223 >gi|284029985|ref|YP_003379916.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809278|gb|ADB31117.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 220 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 55/121 (45%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA--RNL 174 L +G+++ +E + L + + G ++I++F+ S A L Sbjct: 96 LRAGASGFLVKDTEPVDLLQALRVVIRGDALLSPTVTRRLISEFVARPPDVVSTAGLELL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G ++++IAE++ LS T ++ A KL A +R Q + A + G + Sbjct: 156 TPREREVLALVAHGLSNDQIAERMVLSPTTAKTHVSRAMSKLQARDRAQLVVIAYQSGLV 215 Query: 235 C 235 Sbjct: 216 S 216 >gi|297202491|ref|ZP_06919888.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197709982|gb|EDY54016.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 212 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSC 181 GY++ + L V A G V + + + + L+ RE Sbjct: 99 AGATGYLLKDAPRDELFTAVRAAAQGRTVLSPAVASRLVSAVRAPGAPGNETLSAREREV 158 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ EIA +L +S TV +L KL +R A+A A G + Sbjct: 159 LALVAKGTSNREIARELFISEATVKTHLTHLYAKLGVKDRAAAVATAYERGIL 211 >gi|78046817|ref|YP_362992.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|289669198|ref|ZP_06490273.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] gi|325927244|ref|ZP_08188501.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|78035247|emb|CAJ22892.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325542364|gb|EGD13849.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 213 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--L 174 L GY++ L + A G ++++ + + S R L Sbjct: 94 LKAGAKGYLLKDVSLEQLVGAIRTVAEGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA + Sbjct: 154 TDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|297194566|ref|ZP_06911964.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152332|gb|EDY66387.2| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 227 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLE----LFKKRSSAAR 172 L +G+++ + L V I A G ++I DF + S Sbjct: 99 LRAGASGFLLKDAPPADLIAAVRIVAAGEALLAPSVTRRLIADFAAQRPAPRRDPSLRLN 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L+L G +++EIA L L+ TV ++G KLD +R QA+ A G Sbjct: 159 GLTPRETEVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYESG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|229069092|ref|ZP_04202384.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185] gi|228714037|gb|EEL65920.1| hypothetical protein bcere0025_12990 [Bacillus cereus F65185] Length = 151 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK +LTERE Sbjct: 37 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHDDLTEREFE 96 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 97 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 147 >gi|165975516|ref|YP_001651109.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250537|ref|ZP_07336734.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251881|ref|ZP_07338052.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307244860|ref|ZP_07526959.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247035|ref|ZP_07529089.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249257|ref|ZP_07531254.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251580|ref|ZP_07533487.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253814|ref|ZP_07535668.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307256079|ref|ZP_07537867.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307258270|ref|ZP_07540013.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260511|ref|ZP_07542205.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|165875617|gb|ABY68665.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302649311|gb|EFL79496.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650525|gb|EFL80684.1| nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854305|gb|EFM86511.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856487|gb|EFM88636.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858781|gb|EFM90840.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861044|gb|EFM93050.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863298|gb|EFM95238.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306865501|gb|EFM97396.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306867730|gb|EFM99575.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869823|gb|EFN01606.1| Nitrate/nitrite response regulator protein [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 209 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 2/105 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 + +GY++ S+ L + A G + + L + + LT+RE Sbjct: 97 MDAGVDGYLLKDSDTAELVENIRKAAQGETVLSESVKQHLLERRPENDPLSVLTDRERDV 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LQ G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 157 LQWIATGMSNKQIASQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|302534781|ref|ZP_07287123.1| two-component system response regulator [Streptomyces sp. C] gi|302443676|gb|EFL15492.1| two-component system response regulator [Streptomyces sp. C] Length = 270 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 148 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 207 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 208 TDRELEVLKLVATGMNNRDIAKQLFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 267 >gi|297161600|gb|ADI11312.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 216 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERE 178 L GYV + LA + G L L + + +LTERE Sbjct: 100 LRAGAAGYVYKDVDPDALAGAIRSVHAGHVLLQPEVALALLSQEEAGGGQGRGGSLTERE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 160 REVLALIADGRSNREIARALILSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 214 >gi|228989393|ref|ZP_04149382.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM 12442] gi|228770340|gb|EEM18915.1| hypothetical protein bpmyx0001_1690 [Bacillus pseudomycoides DSM 12442] Length = 216 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLEL------FKKRSSA 170 L +GY++ E + ++ G Q++ + + + Sbjct: 90 LEQGASGYLLKDMETDAIVQAILTVHAGGAVLPQDITAQIVKELKRTKVVEISGQNQPKQ 149 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R Sbjct: 150 VEQLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVR 209 Query: 231 FGY 233 +G Sbjct: 210 YGI 212 >gi|229043280|ref|ZP_04191002.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676] gi|229078723|ref|ZP_04211277.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2] gi|228704596|gb|EEL57028.1| hypothetical protein bcere0023_13860 [Bacillus cereus Rock4-2] gi|228726141|gb|EEL77376.1| hypothetical protein bcere0027_13330 [Bacillus cereus AH676] Length = 199 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--KKRSSAARNLTERETS 180 Y++ TS +A+ V G +V + KK +LTERE Sbjct: 85 AGATSYLLKTSRASDIADAVRATYDGETVLEPKVTGKMMSRMRQKKEQPLHDDLTEREFE 144 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G +++EIA++L +++ TV ++ + KL+ +R QA+ A R Sbjct: 145 ILLLIAEGKSNQEIADELFIALKTVKTHVSNILNKLNVSDRTQAVIYAFRH 195 >gi|25027912|ref|NP_737966.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259506306|ref|ZP_05749208.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] gi|23493195|dbj|BAC18166.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259166086|gb|EEW50640.1| DNA-binding response regulator [Corynebacterium efficiens YS-314] Length = 221 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF----------KKRSSA 170 L G+++ + + L + G ++ +E+ ++ Sbjct: 97 LRAGAAGFLLKNTRPVELTAAIRTVHAGDAVVSPRITAKLIEVALPQLNQGVPPTEQDPE 156 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L G GYT+ EIA+ L LS TV + G +KL +R+QA+ +A Sbjct: 157 LDRLTEREREVFVLVGRGYTNPEIAQALHLSESTVKTHFGRVLMKLGLTSRVQAVIRAYE 216 Query: 231 FGYI 234 G + Sbjct: 217 LGLV 220 >gi|228925473|ref|ZP_04088567.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228944022|ref|ZP_04106406.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815693|gb|EEM61930.1| hypothetical protein bthur0007_2020 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228834218|gb|EEM79761.1| hypothetical protein bthur0010_2050 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 214 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDF----LELFKKRSSAAR 172 L +GY++ E +A ++ G Q+I + + + Sbjct: 90 LEQGASGYLLKDMETDAIAQAILTVHSGGAVLPQDITAQIIKELKKTKVAVECTTPEQLA 149 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 150 QLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 Query: 233 Y 233 Sbjct: 210 I 210 >gi|153011539|ref|YP_001372753.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188] gi|151563427|gb|ABS16924.1| regulatory protein LuxR [Ochrobactrum anthropi ATCC 49188] Length = 260 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 65/189 (34%), Gaps = 18/189 (9%) Query: 63 DIPNILIETYGDD---FLFHFNSGLLPIIWQSI--------QEETVIESSGQLSVRLEGG 111 +P Y + P ++ S +L E Sbjct: 64 TVPTSWTARYSTKNYFVIDPIFQEDAPYFQNDASGIVRDLQEDANECPSIAELLQDAEKH 123 Query: 112 LLPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFK 165 L +A R G +F + ++ +I L K Sbjct: 124 GLGNIFVAVSARSQKGAVGCTLFMFEMSPDEDREQFVAKLRPRLLSLSG-IIHSALCGCK 182 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A+ Sbjct: 183 DVATVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAV 242 Query: 226 AKAIRFGYI 234 A A+ G I Sbjct: 243 ATALSLGII 251 >gi|186680836|ref|YP_001864032.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463288|gb|ACC79089.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 224 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 13/124 (10%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGA-------------CYQVITDFLELFKKRSSAA 171 GY + L V A GA ++ + + K + Sbjct: 95 AAGAQGYCLKGIPAESLILAVRSVAGGASWWDQTATTEIRAAFEGNSTVVLPAKTEGTLE 154 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L G +++EIAE L ++ TV ++ + KL+ +R QA AI+ Sbjct: 155 NPLTKREQEILALVAAGKSNQEIAEILYIAPGTVRVHVHAILQKLEVRDRTQAAVLAIQK 214 Query: 232 GYIC 235 G + Sbjct: 215 GLVA 218 >gi|290963157|ref|YP_003494339.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260652683|emb|CBG75816.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 231 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G+++ + L V + A G ++I D AAR Sbjct: 103 LHAGASGFLLKDAPVAELVQAVRVIAAGDALLAPSVTRRLIEDMARRRPAPPGAARLRLN 162 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++ EIA +L ++ TV ++ KL A +R Q + A G Sbjct: 163 GLTPREAEVLSLVAQGQSNTEIAARLVVAEQTVKTHMTRLLAKLGARDRAQLVVFAYESG 222 Query: 233 YIC 235 + Sbjct: 223 LVV 225 >gi|254387068|ref|ZP_05002344.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194345889|gb|EDX26855.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 216 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERE 178 L GYV + LA + G + L + + LT+RE Sbjct: 100 LRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAVALLTQDDQGPSSSRGGALTDRE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 160 REVLSHIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHGI 214 >gi|319892883|ref|YP_004149758.1| Two-component response regulator-like protein [Staphylococcus pseudintermedius HKU10-03] gi|317162579|gb|ADV06122.1| Two-component response regulator-like protein [Staphylococcus pseudintermedius HKU10-03] Length = 208 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY + + L + G ++ ++ + L++RET L+ Sbjct: 98 AGADGYEMKDVDPEALMTSIETVLQGDKVIHKDAQQVMDTVITKPHMLNKLSKRETEVLK 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIAE L +S T+ ++ KL+ +R QA A+ I Sbjct: 158 EMAKGKTNKEIAETLFVSEKTIKTHVSHIFSKLEVTDRTQAAIYAMENHLI 208 >gi|294498204|ref|YP_003561904.1| two-component response regulator LiaR [Bacillus megaterium QM B1551] gi|294348141|gb|ADE68470.1| two-component response regulator LiaR [Bacillus megaterium QM B1551] Length = 208 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L Y++ TS+ +A + G +V + +K S LT RE Sbjct: 94 LEAGATSYLLKTSKAGEIAAAIRRTYEGQSVLEPEVTGKMMSKMRKPSLPHEELTAREME 153 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T++EIA++L +++ TV ++ + KLD +R QA+ A + + Sbjct: 154 ILLLMTQGKTNQEIADELFIALKTVKTHVSNLLSKLDVQDRTQAVIYAFKHKLV 207 >gi|218674909|ref|ZP_03524578.1| transcriptional activator protein [Rhizobium etli GR56] Length = 241 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 84/238 (35%), Gaps = 25/238 (10%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 S +LQ+L L +++ + L+ + + + L P + Sbjct: 16 ASPTLQDLETTLDEVRHIYAISHMVLH-VTRSSGM---------ADSNPLLMLTYPPEWV 65 Query: 70 ETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPV 122 + Y D + G LP+ W + + ++ + + G+ PV Sbjct: 66 KQYRDRDYFSIDPVVRLGRRGFLPVEWSASKWDS--GRAYGFFKEAMAFGVGRQGVTLPV 123 Query: 123 RLGFHKNGYVIFTSE-----FLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTE 176 R + TS + + + + + + + L R A L+ Sbjct: 124 RGPQGERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRVMVLSGMREIADFPQLSR 183 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE CL++ G +++I +L +SV V YL SA KL +A+AKA I Sbjct: 184 RELQCLEMTASGLMAKQICARLSISVSAVQLYLASARRKLTVATTSEAVAKATALELI 241 >gi|169827260|ref|YP_001697418.1| two-component response regulator [Lysinibacillus sphaericus C3-41] gi|168991748|gb|ACA39288.1| two-component response regulator [Lysinibacillus sphaericus C3-41] Length = 204 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA--RNLTERE 178 L Y++ TS +A + G +V + + + ++ LT+RE Sbjct: 88 LEAGAVSYILKTSNAKQIAEAIRKTMGGETVLEPEVTSKMMHRMRNGNNTPLYEQLTDRE 147 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G ++EIA++L +++ TV ++ + KL+ +R QA+ A + G Sbjct: 148 MEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNGL 202 >gi|72162890|ref|YP_290547.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71916622|gb|AAZ56524.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 242 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 13/118 (11%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKK------RSSAAR 172 GY++ + L V G + ++I +F L +K + + Sbjct: 106 AGATGYLLKEISVVELPEAVRAVCKGQSFINPSMATKLINEFAALARKGKDRRSQPTKPP 165 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERET L+L G + +IA++L +S +TV ++ + KL +R +A AIR Sbjct: 166 RLTERETEVLRLVARGLNNRDIADRLYISDNTVKNHVRNILEKLQLHSRTEAAVYAIR 223 >gi|148549711|ref|YP_001269813.1| autoinducer-binding domain-containing protein [Pseudomonas putida F1] gi|148513769|gb|ABQ80629.1| transcriptional regulator, LuxR family [Pseudomonas putida F1] Length = 235 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 37/189 (19%), Positives = 68/189 (35%), Gaps = 19/189 (10%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLS-VRLEG 110 + P+ IE Y D +S +P++W + + + Q + Sbjct: 53 YLYSNYPSEWIERYQRDDFYKQDPAANLSHSSTMPVLWTDD----LYKEAPQFRETACQH 108 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-- 168 GL G + H + + + + G+ + + + Sbjct: 109 GL--RHGWTQSLHDQQHNESQISVARPNGHIDMLELYDKAGSVQWLCHTLHAVLGEHHLN 166 Query: 169 ---SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ERE L+ + G T+ ++A L LS TVN ++ S K +A N+ AI Sbjct: 167 ALCPPQPKMSERELEVLKWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNAANKAGAI 226 Query: 226 AKAIRFGYI 234 A A G+I Sbjct: 227 AIAALRGWI 235 >gi|254392873|ref|ZP_05008042.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294812928|ref|ZP_06771571.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197706529|gb|EDY52341.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325527|gb|EFG07170.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 269 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 147 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 206 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 207 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 266 >gi|308176214|ref|YP_003915620.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743677|emb|CBT74649.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 224 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKR--SSAARNL 174 L G+++ + + + V A G +VI++F SA +L Sbjct: 96 LENGAIGFLLKDAPPTHIIDAVRAAATGEGLVAPAVTRRVISEFARRRAPAARESADADL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR-FGY 233 T RE L +G ++ EIAE+L + + TV ++ S +KL +R+QAI A + G+ Sbjct: 156 TPREREVLAALAEGSSNAEIAEQLFIEIGTVKTHVSSIILKLGVRDRVQAIVWAYQHHGW 215 >gi|300117929|ref|ZP_07055696.1| DNA-binding response regulator [Bacillus cereus SJ1] gi|298724793|gb|EFI65468.1| DNA-binding response regulator [Bacillus cereus SJ1] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K + Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|296268221|ref|YP_003650853.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091008|gb|ADG86960.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 206 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERET 179 + G++ + L + G + ++ LT RE Sbjct: 92 MRAGAAGFLYKDVDPEALVQAIRAVHEGQVLLAPEAAEAVLGGPAAPPGEPEIALTARER 151 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ EIA +L ++ TV ++ + +KL +R QA A+R G + Sbjct: 152 EVLRLIAAGRSNREIARELSVAEKTVKTHVSNVLMKLGVQDRTQAALYAVRRGLV 206 >gi|229169497|ref|ZP_04297202.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228613996|gb|EEK71116.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 184 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL--ELFKKRSSAARNLTERE 178 L +GY++ S + + + G ++ + K S LTERE Sbjct: 66 LRAGADGYLLKDSSSEQVVAAIRMVLQGDSVIHPRMTKKLITYHQQTKSESNENELTERE 125 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 126 KEILFELVKGLSNKEIAEALYISDKTVKIHVNKIFRKLNVKSRSQAVIYAVRNQLV 181 >gi|328882798|emb|CCA56037.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 250 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 128 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 187 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 188 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 247 >gi|322836842|ref|YP_004210756.1| LuxR family transcriptional regulator [Acidobacterium sp. MP5ACTX9] gi|321165929|gb|ADW71629.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 207 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 53/111 (47%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ +A V AHG + + D + S+ A LTERE L+ Sbjct: 100 LDAGAVGYLLKDCPSTEMAEAVRRVAHG---ERVIDPGLAAESWSADAGPLTEREREVLR 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AG+G ++ E+A L L+ T+ YL A KL A NR +A A G++ Sbjct: 157 RAGEGESTAELARTLRLTEGTIRNYLSEAISKLGAHNRTEAARLARAKGWL 207 >gi|320011566|gb|ADW06416.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 214 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 5/114 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTERE 178 L +GYV + LA + G L + + LTERE Sbjct: 98 LRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDTGNGTGRGSTLTERE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 158 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 211 >gi|58583150|ref|YP_202166.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|58427744|gb|AAW76781.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 214 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--L 174 L GY++ L + A G ++++ + + S R L Sbjct: 95 LKAGAKGYLLKDVSLEQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA + Sbjct: 155 TDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 214 >gi|190572437|ref|YP_001970282.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190010359|emb|CAQ43967.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 200 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + LA+ + G + I L L S A LT+RE L+ Sbjct: 94 LEAGVLGYLLKDAPAENLADALRKVKQGI--RAIDPQLAL--DAWSQADPLTDRERRVLR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG+G T+ EIAE+LGLS TV YL KL NRI+A A + G++ Sbjct: 150 LAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANRIEAYRMARQKGWL 200 >gi|182438916|ref|YP_001826635.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779572|ref|ZP_08238837.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178467432|dbj|BAG21952.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659905|gb|EGE44751.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 229 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA----- 171 L +G+++ + L V + A G ++I DF ++ Sbjct: 99 LRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQRPSGATRGGQALR 158 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE+ L+L G +++EIA +L L+ TV ++G KLD +R QA+ A Sbjct: 159 RHGLTPRESEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYE 218 Query: 231 FGYIC 235 G + Sbjct: 219 SGLVT 223 >gi|152965166|ref|YP_001360950.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151359683|gb|ABS02686.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKR---SSAARN 173 L +G+++ + +L + V A G ++I F+ ++ +A + Sbjct: 101 LQAGASGFLLKDATPEVLVDSVRAVARGDSLLAPGITRRLIEHFVSTRRRAVDVPAALAD 160 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G +++EIA +L ++ T ++ KL +R+QA+ G Sbjct: 161 LTPREREVLVCIARGLSNQEIAAELFIAEQTTKTHVSRVLTKLGLRDRVQAVVLGYEIGL 220 Query: 234 IC 235 + Sbjct: 221 VS 222 >gi|325914881|ref|ZP_08177216.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325538972|gb|EGD10633.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 213 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--L 174 L GY++ L + A G ++++ + + S R L Sbjct: 94 LKAGAKGYLLKDVSLEQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA + Sbjct: 154 TDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|2791836|gb|AAC38403.1| transcriptional activator CarR [Pectobacterium carotovorum subsp. carotovorum] Length = 244 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 34/198 (17%), Positives = 69/198 (34%), Gaps = 21/198 (10%) Query: 56 NYDLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRL 108 ++ + P + Y D + + + P W + + + Q Sbjct: 32 SHPYIISNYPEAWMNEYLKKEMFLSDPIIVASLARITPFSWDD-NDLVTLRAKNQDVFIS 90 Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--------ITDF 160 +G F + + + + E +++H Q+ + + Sbjct: 91 SVQHDISSGYTFVLHDHDNNVATLSIANHLEDADFEKCMKSHENDLQMLLVNVHEKVMAY 150 Query: 161 LELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 K ++ + L+ RET L L G T +E++ LG+S TV ++ ++ K Sbjct: 151 QRAIKDQAKPPDSSRNALLSPRETEVLFLVSSGRTYKEVSRILGISEVTVKFHINNSVRK 210 Query: 216 LDAVNRIQAIAKAIRFGY 233 LD +N AI KA+ Sbjct: 211 LDVINSRHAITKALELNL 228 >gi|84624990|ref|YP_452362.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166711074|ref|ZP_02242281.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzicola BLS256] gi|188575549|ref|YP_001912478.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|289665304|ref|ZP_06486885.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] gi|84368930|dbj|BAE70088.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520001|gb|ACD57946.1| two-component system regulatory protein [Xanthomonas oryzae pv. oryzae PXO99A] Length = 213 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--L 174 L GY++ L + A G ++++ + + S R L Sbjct: 94 LKAGAKGYLLKDVSLEQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA + Sbjct: 154 TDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|229490673|ref|ZP_04384511.1| response regulator, two-component system [Rhodococcus erythropolis SK121] gi|229322493|gb|EEN88276.1| response regulator, two-component system [Rhodococcus erythropolis SK121] Length = 227 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCL 182 GYV+ + L + + G + + + +SS+ LT+RE L Sbjct: 116 AGARGYVVKDVDTTELVRAIRAVSRGESAFDSRSASAVVRSLNGQSSSKERLTDRELEVL 175 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +G ++ +I E+L +S TV ++ + KL+ R +A+ A + G I Sbjct: 176 RLLANGLSNIKIGERLFISPTTVKFHVSNIMRKLEVSRRAEAVYAASKQGLI 227 >gi|237731962|ref|ZP_04562443.1| DNA-binding transcriptional activator SdiA [Citrobacter sp. 30_2] gi|226907501|gb|EEH93419.1| DNA-binding transcriptional activator SdiA [Citrobacter sp. 30_2] Length = 240 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 79/236 (33%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ ++ +++ L Q + + F Y + P + P Sbjct: 15 LRFQEMATAEDVYTEL---QQQTQHLEFDFYALCVRHPVPFTR-------PKTSLHTTYP 64 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y + F + L P + + Q G+ + Sbjct: 65 KAWVAHYQSENYFAIDPVLKPENFSQGHLPWNDTLFRDAQPLWDAARNHGLRKGMTQCLM 124 Query: 124 LGFHKNGYVIFTSEFL----MLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L G++ + + + ++EV + + ++ L A ++RE Sbjct: 125 LPNRALGFLSVSRASIRNSRLASDEVELRMQLLVRESLSVLTRLEDDMVMAPEMRFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|145596642|ref|YP_001160939.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305979|gb|ABP56561.1| response regulator receiver [Salinispora tropica CNB-440] Length = 235 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 50/120 (41%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNL-- 174 L G++I + + V AHG ++I ++ + R L Sbjct: 95 LQAGAAGFLIKNMSLDDILDAVRTVAHGNGLLAPSVTRRLIKHVVDTRTAPTVPRRPLSG 154 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE L L G G ++ EIA++L LS TV Y+ KL A +R+ + A G Sbjct: 155 ITEREREVLTLVGRGLSNSEIADELRLSHATVKTYITRLLSKLGARDRVHLVIAAYEAGL 214 >gi|116620395|ref|YP_822551.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223557|gb|ABJ82266.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 200 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ + LAN + GA +VI EL + + A LT+RE L+ Sbjct: 94 LDAGVSGYLLKDAPASTLANAIRRIRAGA--RVIDP--ELAAEAWTEADPLTDRERQVLR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AG+G + EIA L LS TV YL A KL A NR +A A + G++ Sbjct: 150 HAGEGRSGAEIAGLLNLSEGTVRNYLSEAISKLGAANRTEAARIAHQRGWL 200 >gi|258423125|ref|ZP_05686019.1| response regulator receiver [Staphylococcus aureus A9635] gi|257846689|gb|EEV70709.1| response regulator receiver [Staphylococcus aureus A9635] Length = 207 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + + + D +E ++ L++RE L+ Sbjct: 98 GADGYEMKDVEPQQLIETIRRVMNDEKMIHPKAQDVIETVSQKPHYTNKLSKREIEVLRE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIAE L +S T+ ++ KL +R QA A+ I Sbjct: 158 MVKGKTNKEIAETLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207 >gi|228912956|ref|ZP_04076601.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228983471|ref|ZP_04143682.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229119881|ref|ZP_04249141.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201] gi|228663628|gb|EEL19208.1| hypothetical protein bcere0016_2050 [Bacillus cereus 95/8201] gi|228776261|gb|EEM24616.1| hypothetical protein bthur0001_2000 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228846694|gb|EEM91701.1| hypothetical protein bthur0012_2040 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 214 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDF----LELFKKRSSAAR 172 L +GY++ E +A ++ G Q+I + + + Sbjct: 90 LEQGASGYLLKDMETDAIAQAILTVHSGGAVLPQDITAQIIKELKKTKVAVECTTPEQLA 149 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 150 QLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 Query: 233 Y 233 Sbjct: 210 I 210 >gi|229158972|ref|ZP_04287029.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 4342] gi|228624583|gb|EEK81353.1| Two component transcriptional regulator, LuxR [Bacillus cereus ATCC 4342] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA---ARN 173 L +GY++ E L + G +++ L + +K Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANALLSQTLPVEEKEEEPFIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|85376480|gb|ABC70477.1| acylhomoserine lactone-dependent transcriptional regulator [Pseudomonas sp. M18] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 40/223 (17%), Positives = 70/223 (31%), Gaps = 24/223 (10%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-------DDF 76 ++ ++ F Y P + G P +E Y D Sbjct: 5 LEKEVRRLGFDYYAYGVRHTIPFTR-------PKTEVHGTYPKAWLERYQMQNYGAVDPA 57 Query: 77 LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS 136 + + ++W + ++ G P+R + + Sbjct: 58 ILNGLRSSEMVVWSD-----SLFDQSRMLWNEARDWGLCVGATLPIRAPNNLLSVLSVAR 112 Query: 137 EFLMLAN----EVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQLAGDGYTS 191 + +++ E+ + + +L S L+ RE LQ DG +S Sbjct: 113 DQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQWTADGKSS 172 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L +S TVN + + K DA N+ A A A G I Sbjct: 173 GEIAIILSISESTVNFHHKNIQKKFDAPNKTLAAAYAAALGLI 215 >gi|291444348|ref|ZP_06583738.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291347295|gb|EFE74199.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA----- 171 L +G+++ + L V + A G ++I DF ++ Sbjct: 95 LRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQRPAGATRTGQALR 154 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE+ L+L G +++EIA +L L+ TV ++G KLD +R QA+ A Sbjct: 155 LNGLTPRESEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYE 214 Query: 231 FGYIC 235 G + Sbjct: 215 SGLVT 219 >gi|226305274|ref|YP_002765232.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184389|dbj|BAH32493.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 210 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCL 182 GYV+ + L + + G + + + +SS+ LT+RE L Sbjct: 99 AGARGYVVKDVDTTELVRAIRAVSRGESAFDSRSASAVVRSLNGQSSSKERLTDRELEVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +G ++ +I E+L +S TV ++ + KL+ R +A+ A + G I Sbjct: 159 RLLANGLSNIKIGERLFISPTTVKFHVSNIMRKLEVSRRAEAVYAASKQGLI 210 >gi|163761077|ref|ZP_02168154.1| two component transcriptional regulator, LuxR family protein [Hoeflea phototrophica DFL-43] gi|162281628|gb|EDQ31922.1| two component transcriptional regulator, LuxR family protein [Hoeflea phototrophica DFL-43] Length = 223 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR------NL 174 L GYV+ + + +V+ G Q+ L + ++ + +L Sbjct: 104 LRAGARGYVLKSGSLATIGKDVLSVIEGGSPISPQIARHLLAMVSSGAAGSSEGAPQIDL 163 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RET L GY EI EKLG+S TV ++ + KL+ + +AIA+A R G + Sbjct: 164 TNRETEILNAVAKGYKRREIGEKLGISTGTVGNHINNIYQKLNVNSNTEAIARATRMGLL 223 >gi|47568528|ref|ZP_00239227.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|228988639|ref|ZP_04148725.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|47554770|gb|EAL13122.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|228771090|gb|EEM19570.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA---ARN 173 L +GY++ E L + G +++ L + +K Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANALLSQTLPVEEKEEEPFIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|290959922|ref|YP_003491104.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260649448|emb|CBG72563.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 249 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 127 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 186 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 187 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 246 >gi|295402434|ref|ZP_06812387.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|312112712|ref|YP_003991028.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|294975525|gb|EFG51150.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|311217813|gb|ADP76417.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 210 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSS--AARNLTERE 178 L Y++ TS+ +AN + +G +V + K++ LT RE Sbjct: 94 LEAGATSYMLKTSKANEIANAIRATFYGQSVLEPEVTNKVMAKMKQKKELLPHEELTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T++EIA++L ++V TV ++ + KL +R QA+ A + + Sbjct: 154 MEVLLLMAQGKTNQEIADELFIAVKTVKVHVSNILSKLGVQDRTQAVIYAFKHSLV 209 >gi|239940914|ref|ZP_04692851.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239987390|ref|ZP_04708054.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 229 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA----- 171 L +G+++ + L V + A G ++I DF ++ Sbjct: 99 LRAGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFAAQRPAGATRTGQALR 158 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE+ L+L G +++EIA +L L+ TV ++G KLD +R QA+ A Sbjct: 159 LNGLTPRESEVLELIARGLSNQEIAGRLVLAEQTVKTHIGRVLAKLDLRDRAQAVIFAYE 218 Query: 231 FGYIC 235 G + Sbjct: 219 SGLVT 223 >gi|271963063|ref|YP_003337259.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506238|gb|ACZ84516.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN------L 174 L +G+++ +E L V + A G V + + R+ L Sbjct: 91 LRNGASGFLVKDTEPAELIQAVRVVADGDALLSPGVTRRLIAEYASRAKPPHPSQDLGML 150 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L L G G T++EIA KL +S T ++ +KL A +R Q + A G + Sbjct: 151 TDREREVLSLVGTGMTNDEIAGKLFMSPATAKTHVSRTMMKLHARDRAQLVVIAYESGLV 210 >gi|300933089|ref|ZP_07148345.1| two-component system response regulator [Corynebacterium resistens DSM 45100] Length = 212 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 48/110 (43%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ L + + A G +L + LT RE L+L Sbjct: 103 SAGAVGYLLKDCPPTELTDGIRKAARGESVMSSQVMGKLMDSMNRPMETLTAREIDVLRL 162 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AG G ++ +IA++L L+ T+ +++G KL NR A+A A G + Sbjct: 163 AGLGRSNRQIAKELVLTEATIKSHMGRVFTKLGVSNRTAAVAVARERGIL 212 >gi|228995587|ref|ZP_04155253.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17] gi|229003214|ref|ZP_04161054.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4] gi|228758053|gb|EEM07258.1| hypothetical protein bmyco0002_1990 [Bacillus mycoides Rock1-4] gi|228764159|gb|EEM13040.1| hypothetical protein bmyco0003_1900 [Bacillus mycoides Rock3-17] Length = 216 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELF------KKRSSA 170 L +GY++ E + ++ G Q++ + + + Sbjct: 90 LEQGASGYLLKDMETDAIVQAILTVHAGGAVLPQDITAQIVKELKRTKVVEISEQNQPKQ 149 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R Sbjct: 150 VEQLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVR 209 Query: 231 FGY 233 +G Sbjct: 210 YGI 212 >gi|229028063|ref|ZP_04184215.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271] gi|228733301|gb|EEL84131.1| hypothetical protein bcere0028_2010 [Bacillus cereus AH1271] Length = 214 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 11/120 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-------- 172 L +GY++ E +A ++ G + ++ KK A Sbjct: 90 LEQGASGYLLKDMETDAIAQAILTVHSGGAVLPQDITAQIIKELKKTKVAVECTIPEQLA 149 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 150 QLTEREVEVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 209 >gi|229105997|ref|ZP_04236618.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-28] gi|228677392|gb|EEL31648.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-28] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-----------ELFKKRSSAAR 172 L +GY++ E L + G Q+ D E ++ Sbjct: 95 LRSGASGYILKDVEPDQLVEAIRSAYKGNI-QLHPDIASTLISQTLPQEERAEEHFVHVD 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 154 VLTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNG 213 Query: 233 YI 234 + Sbjct: 214 IV 215 >gi|229163761|ref|ZP_04291706.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228619728|gb|EEK76609.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 186 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL--ELFKKRSSAARNLTERE 178 L +GY++ S + + + G ++ + K S LTERE Sbjct: 68 LRAGADGYLLKDSSSEQVVAAIRMVLQGDSVIHPRMTKKLITYHQQTKLESNENELTERE 127 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 128 KEILFELVKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVRNQLV 183 >gi|21221451|ref|NP_627230.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256787364|ref|ZP_05525795.1| two-component system response regulator [Streptomyces lividans TK24] gi|289771263|ref|ZP_06530641.1| two-component system response regulator [Streptomyces lividans TK24] gi|7799203|emb|CAB90919.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289701462|gb|EFD68891.1| two-component system response regulator [Streptomyces lividans TK24] Length = 252 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 130 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 189 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 190 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 249 >gi|15805916|ref|NP_294615.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6458612|gb|AAF10469.1|AE001942_1 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 194 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 11/112 (9%) Query: 125 GFHKNGYVIFTSEFLMLANEVI-IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 GYV ++ LA ++ I AH E+ + LT RE+ L Sbjct: 93 AAGAKGYVSKETDPESLARQLREIVAH----------PEVDRLPQVDVPRLTPRESEVLP 142 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G++++EIA LG+S TV +L KL+A +R +A+++A G + Sbjct: 143 LLARGFSNKEIARDLGVSPDTVKDHLARLYSKLNAGDRTEAVSRARSIGLLS 194 >gi|229094522|ref|ZP_04225591.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-42] gi|228688906|gb|EEL42736.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-42] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K ++ Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANALLSQTLPVEEKEEESSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|148655770|ref|YP_001275975.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148567880|gb|ABQ90025.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 254 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------------ACYQVITDFLELFKKRSSA 170 L + Y LA + A G +V++ F L + ++ Sbjct: 103 LRAGASAYRSKDVNPAELAQVLRRVARGEYVINDVVLDDPKVAGRVLSQFRNLPQDLTNL 162 Query: 171 AR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L++RE L+ G ++ EIAE L +S TV ++ S KL +R Q Sbjct: 163 PEVEFPLFTPLSDREIEVLERIAAGGSNREIAEALHISTQTVKNHISSILRKLSLNDRTQ 222 Query: 224 AIAKAIRFGYI 234 A+ A+R G+I Sbjct: 223 AVLYALRRGWI 233 >gi|47565618|ref|ZP_00236658.1| MW1789 [Bacillus cereus G9241] gi|47557254|gb|EAL15582.1| MW1789 [Bacillus cereus G9241] Length = 211 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L ++ G ++ L + K++ + LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIVAVHQGNANFHPKITPALLGRSAVKKEKENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209 >gi|326772247|ref|ZP_08231532.1| two-component system response regulator [Actinomyces viscosus C505] gi|326638380|gb|EGE39281.1| two-component system response regulator [Actinomyces viscosus C505] Length = 230 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------L 174 L +G+++ E L + V A G V + F +R N L Sbjct: 111 LEAGADGFILKDCEPEELVDAVRRLASGYGLVDQSVTRRVIAEFARRQGRVENREALGVL 170 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE +QL G ++ EIA +L + TV ++L K+ A +R+QA+ A R G + Sbjct: 171 TEREREVVQLLAGGMSNAEIAAELVVETSTVKSHLTRILPKIGARDRVQAVVWAFRNGLV 230 >gi|307326772|ref|ZP_07605964.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887535|gb|EFN18529.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 206 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 4/112 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCL 182 GY++ LA V A G V ++ + R R L+ERET+ L Sbjct: 96 AGAAGYLLKDMARAELAEAVRSAARGETVLAPSVAARLMDQLRDRPERPR-LSERETAVL 154 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G T+ EI +L + TV +L A KL +R A+ A+R G + Sbjct: 155 RLVAQGCTNAEIGRRLFIGESTVKTHLLRAFGKLGVDDRTAAVTSAMRLGLL 206 >gi|256376358|ref|YP_003100018.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920661|gb|ACU36172.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 302 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRS-SAARNLT 175 L +G+++ + L + + A G ++IT+F R A +T Sbjct: 163 LRAGASGFLLKDTPPADLLAAIRVVASGEALLSPSVTRRLITEFAARPAARPLPALDAVT 222 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L +G ++ EI E L +S T+ ++G KL A +R Q + A G + Sbjct: 223 AREREVLRLVAEGLSNTEITEALHVSRGTLKTHVGRLLHKLGARDRAQLVIAAYESGLVT 282 >gi|302550833|ref|ZP_07303175.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468451|gb|EFL31544.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 14/121 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSA-------AR 172 GY++ ++ L + V A G V+ ++ L + + A A Sbjct: 92 GATGYLLKSASTEELRDAVRSTAVGDPVFTPGLAGLVLGEYRRLASEPAPAPDADEPKAP 151 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 152 RLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERG 211 Query: 233 Y 233 Sbjct: 212 L 212 >gi|283832684|ref|ZP_06352425.1| regulatory protein SdiA [Citrobacter youngae ATCC 29220] gi|291072359|gb|EFE10468.1| regulatory protein SdiA [Citrobacter youngae ATCC 29220] Length = 240 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 77/236 (32%), Gaps = 17/236 (7%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L ++ ++ +++ L Q + + F Y + P + P Sbjct: 15 LRFQEMATAEDVYNEL---QQQTQHLEFDFYALCVRHPVPFTR-------PKTSLYTTYP 64 Query: 66 NILIETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + Y + F + L P + + Q G+ + Sbjct: 65 KAWVAHYQSENYFAIDPVLKPENFSQGHLPWSDTLFRDAQPLWDAARNHGLRKGMTQCLM 124 Query: 124 LGFHKNGYVIFTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERE 178 L G++ + + +EV + + ++ + L ++RE Sbjct: 125 LPNRALGFLSVSRANIRNSRLANDEVELRMQLLVRESLSVLMRLEDDMVMVPEMRFSKRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 185 KEILKWTAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|228994130|ref|ZP_04154030.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] gi|228765582|gb|EEM14236.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L +K+ S+ + Sbjct: 95 LKAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIASALLSQTLPQAEKQESSNIHVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILGKLNLSDRTQAALYAVKNGV 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|298246164|ref|ZP_06969970.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553645|gb|EFH87510.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 465 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 6/118 (5%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELF---KKRSSAARNLTE 176 L +GY++ LA + + A G Q+ L ++R + + LT Sbjct: 345 TLRAGADGYLLKDVSSEELAEALRVVARGEVLVQPQLAGRLLSRVGRERERGARSEVLTT 404 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G ++EIA +L +S TVN +L + K++ R +A++KA+ G + Sbjct: 405 RELEVLRLLVRGLRNKEIAARLYVSERTVNFHLANIYQKMNVSGRTEALSKALAQGLV 462 >gi|302533688|ref|ZP_07286030.1| two-component system response regulator [Streptomyces sp. C] gi|302442583|gb|EFL14399.1| two-component system response regulator [Streptomyces sp. C] Length = 219 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA---ARNLTER 177 L GY+ + LA + G +V L +S +LT+R Sbjct: 102 LRAGAAGYLYKDIDPDALAGAIRSVHAGHVLLQPEVAEALLAAQDDQSGPGGRPGSLTDR 161 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 162 EREVLGLIADGRSNREIARTLVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHGI 217 >gi|197105485|ref|YP_002130862.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] gi|196478905|gb|ACG78433.1| transcriptional regulator,LuxR family [Phenylobacterium zucineum HLK1] Length = 255 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 62/167 (37%), Gaps = 8/167 (4%) Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG--GLLPFAGIAFPVRLGFHKNGYVI 133 F+ P +Q + + + ++ EG A I P L G V Sbjct: 79 FIRASRVCAEPFYFQGGRLRSWRTNPALDAIAAEGIETFGVGAAIVAPAYLPGGSIGAVT 138 Query: 134 FTSEFLMLA-----NEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQLAGD 187 + S + E H + + + E ++ +LT RE L+ A Sbjct: 139 WASPDADVDTGSVFAARAAELHALALRFVATYAEATGALVGTSPAHLTRREIQVLKWAAA 198 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EI + +S TV ++ +A+ KL R QA+ +A GY+ Sbjct: 199 GKTDAEIGRIVSISTPTVRFHITNASRKLGVAGRAQAVHRAATLGYL 245 >gi|77461110|ref|YP_350617.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gi|77385113|gb|ABA76626.1| LuxR family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 235 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 36/234 (15%), Positives = 84/234 (35%), Gaps = 16/234 (6%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 K+ + +E+ +++ F I + + ++N+ + Sbjct: 10 KQLTRAKEIESAFPILRTFANNIGFQFCGIQVSRPESPSFKPFH-INNFTKAWNEEYENN 68 Query: 69 IETYGDDFLFHFNSGLLPIIWQ--SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 D + + +LP +W + + + ++ + G + + Sbjct: 69 YSE-EDPITSYCHQSMLPFLWNRKAFSKAPQMWNALRNHGMEHGWSQSY------LNEEN 121 Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------KKRSSAARNLTERETS 180 + + + + +G + + ELF L+ RE Sbjct: 122 DLCCTISLARPQSEIFALELYDQYGVMHFITQHLSELFVHALPPVPAKPPPVRLSTRELE 181 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++L G T+ EI + L ++ TVN ++ + VKL+A N++ AI KA + G++ Sbjct: 182 IVRLCAYGKTAWEIGQILNVAERTVNYHIKNLIVKLNACNKMSAIVKASKLGFL 235 >gi|326439852|ref|ZP_08214586.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 202 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ + LA+ V + G +VI L L + LT RE L+ Sbjct: 94 LAARVGGFLLKEAPPARLADAVREVSAGK--RVIDPQLALAAFD-NGENPLTPREVEVLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A DG + EIA +L LSV TV YL + KL+A NR+ AI A G++ Sbjct: 151 MAADGAEAAEIAVRLFLSVGTVRNYLTTIVTKLNARNRVDAIRVARESGWL 201 >gi|315505229|ref|YP_004084116.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315411848|gb|ADU09965.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 212 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G T L + + LT RET L L Sbjct: 102 AGATGYLLKDAPPEDLAAAVRTAAAGRTTLAPTVANRLMNRLRTPGTALTRRETEVLALV 161 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ I +L L+ TV ++L KL +R A+A A G I Sbjct: 162 ADGLSNHSIGTRLHLTEGTVKSHLARIYAKLGVDSRTAAVASATELGLI 210 >gi|238064526|ref|ZP_04609235.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237886337|gb|EEP75165.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 229 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKK--------RSSAAR 172 L +G++ L + A G +++ L+ F A Sbjct: 104 LRAGASGFLAKDVPAEDLITAIRTVAAGDAVVAPRILKRLLDRFADALPDPAATPPKALN 163 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G ++ EIA +L +S TV ++G KL +R+QA+ A G Sbjct: 164 ALTEREREVLVQVARGLSNAEIARELTVSETTVKTHVGHVLTKLGLRDRVQAVVFAYESG 223 Query: 233 YI 234 + Sbjct: 224 LV 225 >gi|166364716|ref|YP_001656989.1| two-component response regulator [Microcystis aeruginosa NIES-843] gi|159030578|emb|CAO88241.1| luxR [Microcystis aeruginosa PCC 7806] gi|166087089|dbj|BAG01797.1| two-component response regulator [Microcystis aeruginosa NIES-843] Length = 210 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN----LTE 176 L + Y I + L + GA Y Q+ ++ K + L+E Sbjct: 93 LASGADAYCIKGASLDRLLAAIEAAKDGATYLDPQIARLVMDNLKPPAVQPNPNLALLSE 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G ++ EIAE+L LS +T+ ++ KL +R+QA A+R G + Sbjct: 153 REMEVLKLIVEGKSNAEIAEQLYLSTNTIKTHVRGIMNKLAVDDRVQAAVIALRSGIV 210 >gi|37223245|gb|AAQ90224.1| LuxR [Photobacterium leiognathi] Length = 197 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 66/149 (44%), Gaps = 6/149 (4%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + NY + D + + S PI W +++++ + S + ++ Sbjct: 50 IDNYPEKWRKYYDEAGLLEYDPVVNYSKSHHSPINWNVFEKKSIKKESPNV-IKEAQASG 108 Query: 114 PFAGIAFPVRLGFHKNGYVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 G +FP+ + G + F S+ + + + + A+ ++ ++ ++K ++A + Sbjct: 109 LITGFSFPIHTANNGFGMLSFAHSDKDIYTDSLFLHANTNVPLMLPSLVDSYQKINTAHK 168 Query: 173 N----LTERETSCLQLAGDGYTSEEIAEK 197 LT+RET CL A +G ++ +I++ Sbjct: 169 KSDSILTKRETECLAWASEGKSTWDISKI 197 >gi|294630642|ref|ZP_06709202.1| two-component system response regulator [Streptomyces sp. e14] gi|292833975|gb|EFF92324.1| two-component system response regulator [Streptomyces sp. e14] Length = 223 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 48/123 (39%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L +G+++ L + G +++ F + ++ Sbjct: 95 LKAGASGFMLKDVPPGDLLTAIRAVHSGDAVVAPSTTRRLLDRFAPMLPTAGQGPQHKEL 154 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 QRLTEREREVMTLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|229000199|ref|ZP_04159768.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] gi|229007721|ref|ZP_04165313.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228753589|gb|EEM03035.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228759531|gb|EEM08508.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] Length = 215 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG--------ACYQVITDFLELFKKRSS--AARN 173 L +GY++ E L + G A + F + ++ SS Sbjct: 95 LKAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIASALLSQTFPQEEQQESSNIHVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILGKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|323358243|ref|YP_004224639.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323274614|dbj|BAJ74759.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 222 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA------ 170 L +G+++ + L + V I G +VI F +A Sbjct: 97 LSAGASGFLLKNAGPEELVSAVRIVGAGDALLAPEVTRRVIARFASGGAPEPAASVRPPL 156 Query: 171 --ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A LTERE+ L+L + ++ EIA +L + TV ++ + KL A +R+QA+ A Sbjct: 157 SLAEPLTERESEVLKLVAEALSNAEIAARLFIGEATVKTHVSNVLQKLGARDRVQAVVLA 216 Query: 229 IRFGY 233 R G Sbjct: 217 HRHGL 221 >gi|239981891|ref|ZP_04704415.1| two-component system response regulator [Streptomyces albus J1074] Length = 243 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 121 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 180 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 181 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 240 >gi|194364036|ref|YP_002026646.1| two component LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194346840|gb|ACF49963.1| two component transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 200 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + LA+ + G + I L L S A LT+RE L+ Sbjct: 94 LEAGVLGYLLKDAPAENLADALRKVKQGI--RAIDPQLAL--DAWSQADPLTDRERRVLR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG+G T+ EIAE+LGLS TV YL KL NRI+A A + G++ Sbjct: 150 LAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200 >gi|77465673|ref|YP_355176.1| LuxR family transcriptional regulator [Rhodobacter sphaeroides 2.4.1] gi|77390091|gb|ABA81275.1| transcriptional regulator, LuxR family [Rhodobacter sphaeroides 2.4.1] Length = 238 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 80/235 (34%), Gaps = 13/235 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKAR---NFALYTINSALDFPRRQQLICELHNY 57 MS +T S+ R L Q A F Y++ L + Sbjct: 1 MSLLAVTANAVGSISRAESRNELSQALKDAVVGLGFQTYSLAYQRPHALEAVTAPHLTTW 60 Query: 58 DLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG 117 + + D L + +G+ P+IW+S +++ + AG Sbjct: 61 PCEQDGASDPASARIRDPLLDYAVTGIKPLIWRSGSWKSLRKDR---YFPCPHSFEARAG 117 Query: 118 IAFPVRLGFHKNGYV-IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---- 172 + P+ + G + + +++ E+ V+ L ++ + Sbjct: 118 LIVPLPDRRGRIGAITMLSAQREDYPEEIAEAGRIVALAVLVRAGSLLPAAAAVSPALAG 177 Query: 173 --NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ R+ L G ++ EIA LGLS V ++ KLD +R QA+ Sbjct: 178 LAKLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAV 232 >gi|219667288|ref|YP_002457723.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537548|gb|ACL19287.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 215 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 50/119 (42%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARNLTE 176 L +GYV+ + L + A G Y ++ K + +A NLTE Sbjct: 96 LKSGASGYVLKQAADTELLQAIRDVAGGEIYLDSSLAQNLVKSMYSPRKDNNRSASNLTE 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+ GYT++EI E L +SV TV + K+ R + AI GYI Sbjct: 156 REKEVLRYIALGYTNKEIGESLSVSVKTVETHKARIMEKIQCHKRSDLVRYAIEQGYIS 214 >gi|229087315|ref|ZP_04219457.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228696017|gb|EEL48860.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 186 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL--ELFKKRSSAARNLTERE 178 L +GY++ S + + + G ++ + K S LTERE Sbjct: 68 LRAGADGYLLKDSSSEQVVAAIRMVLQGDSVIHPRMTKKLITYHQQTKSESNENELTERE 127 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 128 KEILFELVKGLSNKEIAEALYISDKTVKIHINKIFRKLNVKSRSQAVIYAVRNQLV 183 >gi|227505685|ref|ZP_03935734.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227197653|gb|EEI77701.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 212 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G L + + +LT RE L+L Sbjct: 104 AGAVGYLLKDAPPHELLAAVHSAADGDSALSPIVADRLMTRVRTPRTSLTPRELEVLKLV 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI + L LS TV ++L KL +R A+A A G + Sbjct: 164 AAGASNREIGQDLMLSEATVKSHLVHIYDKLGVRSRTSAVAAAREQGVL 212 >gi|291486493|dbj|BAI87568.1| hypothetical protein BSNT_05953 [Bacillus subtilis subsp. natto BEST195] Length = 218 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA--ARNLTE 176 GY++ + L + + A G ++I++ ++ + A T+ Sbjct: 100 AGAVGYLLKDTLPEELIDAIRAAARGEAIFRTVTAAKIISETFRAKQQPHAEELAEPFTK 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQ G +E+IAEKL +S TV ++ K +A +R QA+ AIR G + Sbjct: 160 RELEVLQQMAYGLRNEDIAEKLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217 >gi|228996994|ref|ZP_04156626.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] gi|228762735|gb|EEM11650.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock3-17] Length = 191 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 8/121 (6%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR 172 FP L YV+ E L V G +V+ + + + Sbjct: 63 FPA-LRAGAISYVLKDIEPNQLVETVRRGVQGESIMHPRVAARVVNEIRAMKQASPDPFS 121 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+L G T+ EIAE L +S TV ++ + KL ++R +A A G Sbjct: 122 ELSERELEVLRLIARGLTNAEIAESLFISEKTVKGHVSNILSKLHMLDRTKAAVFAWEQG 181 Query: 233 Y 233 + Sbjct: 182 F 182 >gi|218662807|ref|ZP_03518737.1| LuxR family transcriptional regulator [Rhizobium etli IE4771] Length = 102 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 1/102 (0%) Query: 134 FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + E I + ++ E + + R LT+RE+ ++ +G TS E Sbjct: 2 LSGEREEPDQGEIADLLLDAMRIFDKLYEEILTQEMSGR-LTQRESEIVKWTSEGKTSAE 60 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 IA LGLS HTVN+++ +A KLDAVNR+ +A A+R G + Sbjct: 61 IAIILGLSEHTVNSHITAAARKLDAVNRVHMVAIALRNGLVS 102 >gi|324324220|gb|ADY19480.1| two component LuxR family transcriptional regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 218 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDF----LELFKKRSSAAR 172 L +GY++ E +A ++ G Q+I + + + Sbjct: 94 LEQGASGYLLKDMETDAIAQAILTVHSGGAVLPQDITAQIIKELKKTKVAVECTTPEQLA 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 154 QLTEREVDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 213 Query: 233 Y 233 Sbjct: 214 I 214 >gi|294666925|ref|ZP_06732155.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603297|gb|EFF46718.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 213 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--L 174 L GY++ L + A G ++++ + + S R L Sbjct: 94 LKAGAKGYLLKDVSLEQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA + Sbjct: 154 TDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|302868391|ref|YP_003837028.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302571250|gb|ADL47452.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 212 Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G T L + + LT RET L L Sbjct: 102 AGATGYLLKDAPPEDLAAAVRTAAAGRTTLAPTVANRLMNRLRTPGTALTRRETEVLALV 161 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ I +L L+ TV ++L KL +R A+A A G I Sbjct: 162 ADGLSNHSIGTRLHLTEGTVKSHLARIYAKLGVDSRTAAVASATELGLI 210 >gi|317491518|ref|ZP_07949954.1| autoinducer binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316921065|gb|EFV42388.1| autoinducer binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 246 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 71/223 (31%), Gaps = 25/223 (11%) Query: 37 TINSALDFPRRQQLICELHNYD--LDSGDIPNILIETYGDDFLFHFNSGLL-------PI 87 S P + N L P+ + Y + L H + +L P Sbjct: 21 RKLSQFGSPEYAYTVVNKKNPSKLLIISSYPDEWVNLYIANNLQHIDPVILTAFKRTSPF 80 Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN---- 143 +W + + L G F + + + + M AN Sbjct: 81 VWDE-NITLMSDLKVSKIFSLSKKYNIANGYTFVLHDHLNNLALLSLIIDSNMKANLEEQ 139 Query: 144 ---------EVIIEAHGACYQVITDFL--ELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 ++IE + Y+++ + + + T RE L A G T Sbjct: 140 FSSEKGNLQMLLIEINEQMYRLVQSVSVDKDGSEMGVSKATFTAREHEVLYWASMGKTYA 199 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 EIA +G+SV TV ++G+ KL N QAI + I Sbjct: 200 EIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVELELIT 242 >gi|313837084|gb|EFS74798.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314927887|gb|EFS91718.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314971857|gb|EFT15955.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328907346|gb|EGG27112.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 210 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S +LT RE L+ + Sbjct: 101 AGATGYLLKDAPAEELLSAIHRSARGEGALAPAVATRLMARMRSPQTSLTARELDVLEAS 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IA+ L +S TV +L KL +R A+AKA G I Sbjct: 161 AGGLSNAQIAQSLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGLI 209 >gi|242237587|ref|YP_002985768.1| LuxR family transcriptional regulator [Dickeya dadantii Ech703] gi|242129644|gb|ACS83946.1| transcriptional regulator, LuxR family [Dickeya dadantii Ech703] Length = 236 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 61/188 (32%), Gaps = 17/188 (9%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ + TY D + + + P W QL Sbjct: 48 SNYPSEWVNTYKKRNYNSIDPVILTAVNKVSPFSWNDNMVRNSRLKLPQLFEHARQ-YDI 106 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLM--------LANEVIIEAHGACYQVITDFLELFKK 166 G F + + + ++ + ++I H + + E + Sbjct: 107 CNGYTFVLHDQNNHMATLSLAADNIENMIHGNQEKLQMLLIATHEKTLSLYRELAESRQH 166 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS+ +ERE L A G T +EIA LG+ TV ++G+ KL N AI Sbjct: 167 RSNDML-FSERENDILYWASMGKTYQEIALILGIKTSTVKFHIGNVVRKLGVTNAKHAIR 225 Query: 227 KAIRFGYI 234 I I Sbjct: 226 MGIEMNLI 233 >gi|75910715|ref|YP_325011.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704440|gb|ABA24116.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 236 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA--ARNLTERE 178 L + Y I + L N + GA Y Q+ ++ K S+ NL+ RE Sbjct: 121 LSSGADAYCIKGASIERLLNAIAAAVDGAAYLDPQIARQVIDHLKPPSAKGNTANLSGRE 180 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G ++ EIAEKL LS +TV ++ KL +R+QA A+R G + Sbjct: 181 LEVLKLMVEGLSNPEIAEKLYLSPNTVKTHVRGIMNKLAVDDRVQAAVVALRSGLV 236 >gi|21241983|ref|NP_641565.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21107378|gb|AAM36101.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 214 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--L 174 L GY++ L + A G ++++ + + S R L Sbjct: 95 LKAGAKGYLLKDVSLEQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA + Sbjct: 155 TDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 214 >gi|256376928|ref|YP_003100588.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921231|gb|ACU36742.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 217 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L +G+++ S L V A G ++I + + R Sbjct: 93 LRAGASGFLLKDSPPARLLEGVRTVARGEALLDPSVTRELIGRYATRVRPREEPVHGALA 152 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L DG ++ EIA +L LS TV Y+ KLD +R+QA+ A R G Sbjct: 153 GLSPRELEVLRLVADGRSNSEIAVELVLSPETVKTYVSRLLAKLDLRDRVQAVVPAHRTG 212 Query: 233 YI 234 + Sbjct: 213 LV 214 >gi|297585551|ref|YP_003701331.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297144008|gb|ADI00766.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 199 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 4/110 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + +GY++ S LA + G ++ EL + + LTERE ++ Sbjct: 92 MSVGVDGYMLKDSPSEELAEAIRQIMQG--RRIFAP--ELIDEVYRSENPLTEREKEVMK 147 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +G +++ IAE L L+ TV Y+ + KL+ NRI+AI + G+ Sbjct: 148 LMAEGMSTKLIAETLFLTNGTVRNYISTILDKLEVDNRIEAIKVYQQKGW 197 >gi|302550470|ref|ZP_07302812.1| two component response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468088|gb|EFL31181.1| two component response regulator [Streptomyces viridochromogenes DSM 40736] Length = 213 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 37/114 (32%), Positives = 51/114 (44%), Gaps = 5/114 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR--NLTERE 178 L GYV + LA + G +V L + S AR +LT+RE Sbjct: 97 LRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVADALLSQEEANSGPARAGSLTDRE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 210 >gi|152970958|ref|YP_001336067.1| DNA-binding transcriptional activator SdiA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955807|gb|ABR77837.1| transcriptional activator for cell division (LuxR/UhpA family) [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 228 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 75/227 (33%), Gaps = 24/227 (10%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 +L+Q +A + YT+ P + + P + Y + F Sbjct: 14 VYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTF-------QSTYPRAWMSHYQAENYFA 66 Query: 80 FNSGLLP-------IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 + L P + W + ++ + GL G+ + L H G++ Sbjct: 67 IDPVLRPENFMRGHLPWN---DSLFRDAPALWDGARDHGLQ--KGVTQCLTLPNHAQGFL 121 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-----SAARNLTERETSCLQLAGD 187 ++ + E + L + + RE L+ + Sbjct: 122 SVSANNRLPGGYPEDELELRLRTLTELSLLTLLRLEDEMVMPPEMKFSRRELEILKWTAE 181 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS E+A L +S +TVN + + K +A N+ Q A+ G I Sbjct: 182 GKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 228 >gi|51892061|ref|YP_074752.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855750|dbj|BAD39908.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 218 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSS------AARNLTE 176 +GY++ L + + G + L+ F++ + + L+ Sbjct: 94 AGADGYLLKNLGPEELVSSLRAAISGEAPISSVMAAKMLKEFRQPRANTTGKQPGQQLSP 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+LA G T +EIA KL ++ TV ++ KL NR +A+ AIR G Sbjct: 154 REIEVLRLASTGLTYKEIAAKLYVAESTVKNHMRHILEKLHLRNRSEAVGYAIRTGL 210 >gi|300790264|ref|YP_003770555.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799778|gb|ADJ50153.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 206 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 +GY++ + LAN + A G + +L + R+ + L+ RE L+L Sbjct: 96 AGASGYLLKDASRAELANAIRAAARGETVLAPSVAGKLVNRVRNPEPQPLSAREVEVLRL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ +I L +S TV +L KL +R A+ A+ + Sbjct: 156 VAKGGTNADIGRALHISEATVKTHLLRVFGKLGVSDRTAAVTTAMARNLL 205 >gi|300784675|ref|YP_003764966.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794189|gb|ADJ44564.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 219 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFL---ELFKKRSSAARNLTER 177 L +G+++ + +A+ V A G + I + K + AA+ LT R Sbjct: 95 LLAGASGFLLKRARKEEIAHAVRTVAAGESLLFPEAIRRLVIGRAAGGKHTRAAKTLTRR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L G ++++IA L +S+ TV ++G KL A NR QA+ A G + Sbjct: 155 EAEVLRLIATGLSNQDIAAALVVSLETVKTHVGHIFTKLGAGNRSQAVVIAYEAGVV 211 >gi|294627058|ref|ZP_06705648.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598720|gb|EFF42867.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 213 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--L 174 L GY++ L + A G ++++ + + S R L Sbjct: 94 LKAGAKGYLLKDVSLEQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA + Sbjct: 154 TDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|271970494|ref|YP_003344690.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270513669|gb|ACZ91947.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 217 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNL-- 174 L +G+++ L V + A G ++I D + + + A L Sbjct: 94 LHAGASGFLLKDVRRDDLVQAVRVVAGGESLLAPSVTRRLIDDMVRRRARPPAPAAALDM 153 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+L G G ++ EIA + +S HTV ++ + KL +R+QA+ A G Sbjct: 154 LTARERETLELLGRGLSNAEIAATMVVSEHTVKTHVSNVLTKLGLRDRVQAVITAYETGL 213 Query: 234 I 234 I Sbjct: 214 I 214 >gi|108805597|ref|YP_645534.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766840|gb|ABG05722.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 219 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 YV+ LA+ V A G +V+ + + + + L++RE Sbjct: 99 AGALSYVLKEIGPAELADAVRKAAAGEAVLHPRVAARVVRELHGARRAEPNVFQELSDRE 158 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G ++ EIA +L +S TV +++ + KL +R QA A R G + Sbjct: 159 MEVLKLIAEGLSNAEIAARLYVSEKTVKSHVSNILGKLHLADRTQAAVYAWREGVV 214 >gi|297155595|gb|ADI05307.1| putative response regulator [Streptomyces bingchenggensis BCW-1] Length = 228 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ L + A G A +IT FL + A + Sbjct: 97 LRAGASGFLGKDVGADELLTGIRTVASGDSLLSPVATRALITRFLAAPDPEAPLAPSELL 156 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + LA +G ++ EIAE L +S TV ++ A KL A +R Q + A + Sbjct: 157 ASLTAREREVMALAAEGKSNAEIAEVLFVSPLTVRTHVQRAMNKLGARDRAQLVVIAYQS 216 Query: 232 GYI 234 G + Sbjct: 217 GLV 219 >gi|254385641|ref|ZP_05000964.1| two component system response regulator [Streptomyces sp. Mg1] gi|194344509|gb|EDX25475.1| two component system response regulator [Streptomyces sp. Mg1] Length = 224 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARN--- 173 L +G+++ L + + A +++ F + +S RN Sbjct: 95 LKAGASGFMLKDVPPAELLAAIRSVHSGDAVVAPSTTRRLLDRFAPMLPTTTSEPRNKEI 154 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 ERLTEREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|319787738|ref|YP_004147213.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466250|gb|ADV27982.1| two component transcriptional regulator, LuxR family [Pseudoxanthomonas suwonensis 11-1] Length = 213 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 19/125 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--------------QVITDFLELFKKRSS 169 L GY++ L + A G + DF+ L + Sbjct: 94 LKAGARGYLLKDVSLEQLVGAIQTVASGGSLVQPAVTQRLLSGLEHMRNDFVSLDR---- 149 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 150 -PDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAF 208 Query: 230 RFGYI 234 + Sbjct: 209 ELQLV 213 >gi|57234766|ref|YP_181176.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57225214|gb|AAW40271.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] Length = 232 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK--RSSAARNL 174 L +GY++ +++ + + G A +++ + + K+ L Sbjct: 96 LEAGASGYLLKSAKSDEIVGAIRAIKAGESVLDSIATRKLLERVVNVSKETDEDKVRGQL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE LQLA G ++ EIA+KL LS+ TV A+L + K+ R +AI K R GY+ Sbjct: 156 SPREIEILQLASKGLSNREIADKLELSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREGYV 215 >gi|89098035|ref|ZP_01170921.1| two-component response regulator [Bacillus sp. NRRL B-14911] gi|89087198|gb|EAR66313.1| two-component response regulator [Bacillus sp. NRRL B-14911] Length = 210 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLT 175 L NG+++ TS+ L + G +V+ L+ A LT Sbjct: 93 TLREGTNGFLLKTSDGPRLLQSIRSCLEGGISIHEQVAAKVMPKLLD-HSCHEEAEVPLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G G T++EIA +L LSV TV +L KLD +R Q A++ + Sbjct: 152 PRERDIARLIGHGKTNKEIANELYLSVGTVKNHLTQILQKLDLRDRTQLAIFAVKNDIL 210 >gi|271963222|ref|YP_003337418.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506397|gb|ACZ84675.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 207 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 1/111 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184 GY++ + L ++ A G + L + R+ + +L+ RE L L Sbjct: 96 AGAAGYLLKDTSRADLLAAIVSAARGETVLSPSVATRLVTRMRAPVSESLSPREAEVLSL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G T+ +I ++L +S TV +L KL +R A+ A+ G + Sbjct: 156 VARGLTNAQIGKELFISETTVKTHLLRVFGKLGVSDRTAAVTTALDRGLLT 206 >gi|206576935|ref|YP_002237709.1| regulatory protein SdiA [Klebsiella pneumoniae 342] gi|290508769|ref|ZP_06548140.1| DNA-binding transcriptional activator SdiA [Klebsiella sp. 1_1_55] gi|206565993|gb|ACI07769.1| regulatory protein SdiA [Klebsiella pneumoniae 342] gi|289778163|gb|EFD86160.1| DNA-binding transcriptional activator SdiA [Klebsiella sp. 1_1_55] Length = 240 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 78/227 (34%), Gaps = 24/227 (10%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 +L+Q +A + YT+ P + + P + Y + F Sbjct: 26 VYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTF-------QSTYPRAWMSHYQAENYFA 78 Query: 80 FNSGLLP-------IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 + L P + W ++ +++ + GL G+ + L H G++ Sbjct: 79 IDPVLRPENFMRGHLPW---EDGLFRDAAALWDGARDHGLK--KGVTQCLTLPNHAQGFL 133 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-----SAARNLTERETSCLQLAGD 187 ++ + + E + L + + RE L+ + Sbjct: 134 SVSANNRLPGSYPDDELEMRLRMLTELSLLALLRLEDEMVMPPEMKFSRRELEILKWTAE 193 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS E+A L +S +TVN + + K +A N+ Q A+ G I Sbjct: 194 GKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240 >gi|208401188|gb|ACI26687.1| RhlR transcriptional regulator [Pseudomonas aeruginosa] gi|209171245|gb|ACI42868.1| RhlR [Pseudomonas aeruginosa] Length = 241 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 71/231 (30%), Gaps = 24/231 (10%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-- 73 + +++ ++ F Y P + G P +E Y Sbjct: 23 DSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTR-------PKTEVHGTYPKAWLERYQMQ 75 Query: 74 -----DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 D + + ++W + ++ G P+R + Sbjct: 76 NYGAVDPAILNGLRSSEMVVWSD-----SLFDQSRMLWNEARDWGLCVGATLPIRAPNNL 130 Query: 129 NGYVIFTSEFLMLAN----EVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCLQ 183 + + +++ E+ + + +L S L+ RE LQ Sbjct: 131 LSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQ 190 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +S EIA L +S TVN + + K DA N+ A A G I Sbjct: 191 WTADGKSSGEIAIILSISESTVNFHHKNIQKKFDAPNKTLAATYAAALGLI 241 >gi|238062419|ref|ZP_04607128.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237884230|gb|EEP73058.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 150 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNL------ 174 L +G+++ + L + + A G V ++ F +R AR L Sbjct: 24 LRAGASGFLLKDTPPAELLAGIRVVAAGEGLLAPTVTRRLIDEFARRPEPARPLPRRLEG 83 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE L L G ++ E+AE+L LS+ TV ++G KL +R Q + A G Sbjct: 84 VTEREREVLMLIARGLSNAELAEQLSLSLPTVKTHVGRLLTKLAVRDRAQLVIVAYETGL 143 Query: 234 I 234 + Sbjct: 144 V 144 >gi|284032594|ref|YP_003382525.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811887|gb|ADB33726.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 212 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 9/114 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERET 179 +GY++ ++ + V A G ++ ++ L LTERET Sbjct: 96 GASGYLVKSASLDEFDDAVRRTAEGDAVFSAGLAGLLLGEYRRLGA--GPEVPQLTERET 153 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G T+++IA++L LS TV ++ + KL NR + + AI G Sbjct: 154 EVLRLVARGLTAKQIAQRLVLSHRTVENHVQNTLRKLQLHNRAELVRYAIENGI 207 >gi|229822019|ref|YP_002883545.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567932|gb|ACQ81783.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 211 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 45/110 (40%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQL 184 GY++ + L V A G L + R A L+ RE L+L Sbjct: 96 AGATGYLLKDAPRDELFRAVEAAAQGQAVLSPAVATRLMGQMRQPAPEPLSRRELEVLEL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ + A+ L +S TV +L A KL +R A+A A GY+ Sbjct: 156 VARGSTNRDAAKHLFISEATVKTHLLHAYAKLGVNDRAAAVATAFSRGYL 205 >gi|126650153|ref|ZP_01722386.1| two-component response regulator [Bacillus sp. B14905] gi|126593325|gb|EAZ87287.1| two-component response regulator [Bacillus sp. B14905] Length = 210 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFK--KRSSAARNLTERE 178 L Y++ TS +A + G +V + + + + +LT+RE Sbjct: 94 LEAGAVSYILKTSNAKQIAEAIRKTMGGETVLEPEVTSKMMHRMRHGNNTPLYDHLTDRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G ++EIA++L +++ TV ++ + KL+ +R QA+ A + G Sbjct: 154 MEVLLLMAQGKANQEIADELYIALKTVKTHVSNILAKLEVQDRTQAVVYAFQNGL 208 >gi|104783716|ref|YP_610214.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95112703|emb|CAK17431.1| putative transcriptional regulator, LuxR family [Pseudomonas entomophila L48] Length = 234 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 64/185 (34%), Gaps = 16/185 (8%) Query: 61 SGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + P E Y D + + L P IW + + Sbjct: 55 YNNYPREWNEHYRQGNFLTIDPIVSMCHKTLKPQIWS----DELYCEVPHFR-ESAMRFG 109 Query: 114 PFAGIAFPVRLGFHKNGYVIFT-SEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSS 169 G V H + + + EV +A C + E ++ S Sbjct: 110 ITHGWTQSVFDQRHNESQLSVCRGKRPIKVKEVYDKASQVMWLCNTLHAALSEHHLEKLS 169 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 NL+ERE L+ + G T+ ++A L LS TVN ++ S K +A N+ AIA A Sbjct: 170 PTPNLSERELEVLKWSAGGKTAADVATILSLSTSTVNFHIRSVINKTNAANKAGAIAVAF 229 Query: 230 RFGYI 234 G + Sbjct: 230 LRGLL 234 >gi|254524756|ref|ZP_05136811.1| two-component system response regulator, LuxR family [Stenotrophomonas sp. SKA14] gi|219722347|gb|EED40872.1| two-component system response regulator, LuxR family [Stenotrophomonas sp. SKA14] Length = 200 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + LA+ + G + I L L S A LT+RE L+ Sbjct: 94 LEAGVLGYLLKDAPAENLADALRKVNQGI--RAIDPQLAL--DAWSQADPLTDRERRVLR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG+G T+ EIAE+LGLS TV YL KL NRI+A A + G++ Sbjct: 150 LAGEGRTASEIAEQLGLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200 >gi|329939589|ref|ZP_08288890.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301159|gb|EGG45054.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 204 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + +++ + LA V G + + D + A LT+RE L+ A Sbjct: 99 AGADAFLVKDAPAAQLAQAVRKVLAG---ERVIDPTLAAAALAEGANPLTDREREVLRAA 155 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ E+A L LS TV YL +A KL A NR +A+ A G++ Sbjct: 156 ADGATNAELATALHLSQGTVRNYLSTAIQKLTARNRTEAVRIAREKGWL 204 >gi|302554629|ref|ZP_07306971.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472247|gb|EFL35340.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 235 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 11/125 (8%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR 172 FP L GY+ + ++ V G +++ E + + Sbjct: 107 FPA-LAAGARGYLTKDAGGEVIVRAVHSVLSGEAGLSPSVQRRLLERLAEGGTRPPAPPE 165 Query: 173 ---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RET L L DG +++EIA +L +S TV ++ + K +R QA+ A Sbjct: 166 VPDGLTARETEVLVLIADGLSNQEIARRLHVSTATVKTHINNLFTKTGLKDRAQAVRYAY 225 Query: 230 RFGYI 234 G + Sbjct: 226 GKGLV 230 >gi|225872721|ref|YP_002754178.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] gi|225794134|gb|ACO34224.1| DNA-binding response regulator [Acidobacterium capsulatum ATCC 51196] Length = 203 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 50/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ LA+ V G +VI L S LTERE L Sbjct: 96 LDAGAKGYLLKDRPAAELADAVRRVHQG--LRVIDPQLA-ADAWESGPDPLTERERQILW 152 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AG+G S++IA +L LS TV YL A KL A NR+ A A G++ Sbjct: 153 RAGEGKASQDIAAELHLSEGTVRNYLSEAISKLGAANRVDAARIARSKGWL 203 >gi|307141914|gb|ADN34749.1| transcriptional activator CmrR [Pseudomonas sp. CMR12a] Length = 235 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 69/215 (32%), Gaps = 13/215 (6%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSG 83 IQ F + FP + + +NY + D + Sbjct: 25 IQEAATMLEFEYCAYGLQVIFPEEK--VVMFNNYPRQWQRRYDTENYLAIDPIVAQGRQS 82 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT------SE 137 PIIW + + G + + + + Sbjct: 83 QTPIIWAD-----SVSREAPIFWEEARAAGLKVGWSQSSINAAGAASMLSLSRSSQPITR 137 Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + ANE+ + + + + LT RE L+ G G TS EI+ Sbjct: 138 QELDANEIKMRWLVNVAHLALSNRISTRLANPYEVKLTSREKEVLKWTGSGKTSFEISCL 197 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L +S +TVN ++ ++ +KL A N+ A+ +A G Sbjct: 198 LAISENTVNFHIKNSILKLSAANKTAAVIQAFLTG 232 >gi|296128716|ref|YP_003635966.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296020531|gb|ADG73767.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 219 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L GY++ TS L V+ A G VI + + A + Sbjct: 98 LHAGAVGYLLKTSRPEQLTEAVLSAAAGEGLLSPEVTRAVIARAVAERRPARPAPQPVVP 157 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L G ++EIA +L +S TV ++ + KL +R+QA+ A G Sbjct: 158 LTEREQDVLALVARGLNNDEIAAELVVSRATVKTHVSNLLAKLGLRDRVQAVVYAHEHGL 217 >gi|258650774|ref|YP_003199930.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553999|gb|ACV76941.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 230 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 11/150 (7%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA-- 152 + S Q+ V + A I +RLG G+++ TS ML + + A G Sbjct: 73 RRLAAQSPQVRVIVLTTFDEDAAIDGALRLGAA--GFLLKTSPPEMLLDAIRRVAAGGGQ 130 Query: 153 -----CYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 +VI + +R+ LT RET LQL G+ + EIA L L TV Sbjct: 131 LDPMVVPRVIAGYAAAPRMGERAPELDRLTPRETEVLQLVARGHNNAEIAALLHLGETTV 190 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +LG KL +R +AIA A G + Sbjct: 191 KTHLGRVLDKLGLRDRNKAIAFAYDSGLVT 220 >gi|307135373|gb|ADN33401.1| HanR [Halomonas anticariensis] Length = 252 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 90/230 (39%), Gaps = 18/230 (7%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 + + L + F +++ P + + NY + + D Sbjct: 30 DYFDKQKLAMEVRENTGFEFFSLVLRPCIPFTNNYLYIIDNYGCEWEGLYQDKKFWTIDP 89 Query: 76 FLFH---FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR-LGFHKNGY 131 L H N I+W E ++ + S +L R +G++F V G Sbjct: 90 VLQHKNYVNKSG--ILW----ENSLFDKSNEL-WRSAEDFGLCSGMSFLVSFSDMPVRGV 142 Query: 132 VIFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKRSSAARN------LTERETSCLQL 184 +S+ AN ++ + ++ K + ++ L+ RE L+ Sbjct: 143 FSISSKDYYYANNQDVKMQRYNVCPLSIKVMDCIKGKVDVGKSVANPVFLSVREADILRY 202 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + DG TS EI++KL ++ T++ ++ +A KL N++QA++KA+ + Sbjct: 203 SADGLTSSEISKKLYVTKSTIDFHIKNAIDKLGCKNKVQAVSKALLLDIL 252 >gi|309789860|ref|ZP_07684439.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308228164|gb|EFO81813.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 203 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183 GY+ E LA + HG L + AA+ LT RE L+ Sbjct: 92 AGALGYLYKDVEADQLAIAIRNAMHGRATIDAQLLHVLTHQTDKAAQRPDLTNREREVLR 151 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T+ +IA+ L +S TV ++ S KL NR +A A++ I Sbjct: 152 LLVAGKTNHQIADLLKISPATVRIHVSSILAKLGVNNRTEAAIIAVQHKLI 202 >gi|16331883|ref|NP_442611.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1001802|dbj|BAA10682.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 209 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ +E L N + H + D +R S L+ERE L Sbjct: 99 LQAGAKGYLLKETEPDELLNAIRTV-HRGQKYIPPDVGAKLVQRLSNPE-LSERELEVLG 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G ++ +IA L + TV +++ KLD +R QA+ A++ G + Sbjct: 157 SLAQGMSNADIATALSIGEGTVKSHVNRILNKLDVGDRTQAVIVAVKRGIVS 208 >gi|238059358|ref|ZP_04604067.1| sensor transduction protein [Micromonospora sp. ATCC 39149] gi|237881169|gb|EEP69997.1| sensor transduction protein [Micromonospora sp. ATCC 39149] Length = 221 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNL-- 174 L +G+++ L + + A G +++ F F +A L Sbjct: 97 LQAGASGFLLKNVPPEELLAAIRVVAEGDSVVAPSITRRLLDRFAGQFGPGPAADPRLAQ 156 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE L L G ++ EIA ++ ++ TV ++G KL +R+QA+ A G Sbjct: 157 LTEREREVLLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKLRLRDRVQAVVLAYESGL 216 Query: 234 IC 235 + Sbjct: 217 VT 218 >gi|271962987|ref|YP_003337183.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506162|gb|ACZ84440.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 209 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTER 177 + GYV+ + L V A G A +T + ++ A LT R Sbjct: 94 MRAGARGYVLKGARKAELVRSVQAVAEGEAIFGPAIAARLTGYFTERERSEPALPELTRR 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L + T+ +IA +LGLS TV ++ + KL +R AI +A G Sbjct: 154 EREILGLVAEHLTNPQIAARLGLSQKTVRNHVSAVFSKLQVADRAHAIMRAREAGL 209 >gi|329940703|ref|ZP_08289983.1| two component response regulator [Streptomyces griseoaurantiacus M045] gi|329299997|gb|EGG43895.1| two component response regulator [Streptomyces griseoaurantiacus M045] Length = 213 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 5/114 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERE 178 L GYV + LA + G L + + LTERE Sbjct: 97 LRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDTGPAQGRAGTLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLSDRTQAALWAVRHG 210 >gi|259046510|ref|ZP_05736911.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] gi|259036675|gb|EEW37930.1| DNA-binding response regulator [Granulicatella adiacens ATCC 49175] Length = 211 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 52/121 (42%), Gaps = 6/121 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSS--AARN 173 FP Y++ TS +A + G QV + + + + Sbjct: 90 VFPAINA-GAKSYILKTSSASQIAKAIRDTYQGDGVFEPQVTDKLVNRIQMKQQHFPHDD 148 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G +++EIA++L +++ TV ++ + KL+ +R QA A + Sbjct: 149 LTQRELEVLLLIAQGKSNQEIADELFITLKTVKTHVSNILSKLEVEDRTQATIYAFKHQL 208 Query: 234 I 234 I Sbjct: 209 I 209 >gi|291299547|ref|YP_003510825.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568767|gb|ADD41732.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL--ELFKKRSSAARNL 174 L G+++ +E L + V + A G +++ DF + + L Sbjct: 96 LRAGAGGFLVKDTEPAELIHAVRVVARGDALIAPTITRRLLADFATQHRAPQPNPRLNAL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERET L L G +++EIA KL LS T ++ KL A +R Q + A G Sbjct: 156 TERETEVLGLIAAGLSNDEIAAKLFLSPATSKTHVSRIMSKLGARDRAQLVILAYESGI 214 >gi|22298266|ref|NP_681513.1| two-component response regulator [Thermosynechococcus elongatus BP-1] gi|22294445|dbj|BAC08275.1| two-component response regulator [Thermosynechococcus elongatus BP-1] Length = 209 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLE-LFKKRSSAARNLTERET 179 L + Y I L + GA Y Q+ ++ L + + +L++RE Sbjct: 95 LSSGADAYCIKGERIERLLMAIAAAQEGATYLDPQIARHVIQHLHSPQPTMDYHLSQREL 154 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +GY++ EIA KL LS +TV ++ KL +R+QA A+R G + Sbjct: 155 DVLKLMVEGYSNPEIAGKLFLSPNTVKTHVRGILNKLAVDDRVQAAVVALRNGLV 209 >gi|304406459|ref|ZP_07388115.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304344517|gb|EFM10355.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 220 Score = 103 bits (256), Expect = 3e-20, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 13/121 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR------ 172 GY++ E L + G A +++ E R Sbjct: 97 AGAKGYLLKDIEPDELVRAIRRVWQGQVELHPDAASRLMNILAEPESNRDDPDEAAKRLS 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G +++EI + L ++ TV ++ KL +R QA A++ G Sbjct: 157 ELTKREHEVLRLIATGMSNKEIGDSLSITEKTVKTHVSHVLEKLGFADRTQAAIFAVKQG 216 Query: 233 Y 233 Sbjct: 217 I 217 >gi|307151762|ref|YP_003887146.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981990|gb|ADN13871.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 210 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARNLTE 176 L + Y + + L + GA Y V+ + +++ NL+E Sbjct: 93 LSSGADAYCVKGASLDRLMAAIDAAKDGATYLDPQIARLVLGNLKAPAPQQNLKISNLSE 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G ++ EIAE+L LS +T+ ++ KL +R+QA A+R G + Sbjct: 153 RELEVLKLIVEGKSNNEIAEELYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 210 >gi|220913015|ref|YP_002488324.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219859893|gb|ACL40235.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 242 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 14/124 (11%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK-------KRSSAA 171 +G+++ + L + G +++ L + + +A Sbjct: 116 AGASGFLLKDAPPEELLEAIRTVHRGDAVIAPSTTRRLLDHVAPLLRSQGNERPEHHAAV 175 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT RE QL G ++ EIA L +S TV ++G KL A +R+QA+ A Sbjct: 176 QRLTTREREVFQLIAQGRSNPEIAAGLFVSEATVKTHVGHILAKLGARDRVQAVVIAYET 235 Query: 232 GYIC 235 G + Sbjct: 236 GVVT 239 >gi|291440146|ref|ZP_06579536.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343041|gb|EFE69997.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 201 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 15/122 (12%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRS--------SAA 171 GY++ ++ L V A G V+ ++ L + + S A Sbjct: 77 GATGYLLKSASTEELQEAVRRTAAGDPVFTPGLAGLVLGEYRRLASEPAGPAQGDDGSKA 136 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 137 PRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIER 196 Query: 232 GY 233 G Sbjct: 197 GL 198 >gi|229164821|ref|ZP_04292645.1| Response regulator receiver [Bacillus cereus R309803] gi|228618645|gb|EEK75647.1| Response regulator receiver [Bacillus cereus R309803] Length = 221 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 13/122 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA----------CYQVITDFLELFKKRSSA---AR 172 GY++ +E + + + GA + + + ++ S+A A Sbjct: 99 AGAVGYILKDTETEEMLDGIRAMNRGAMIYNSTTANHAFAQFLKYDNVPEEDSTANEYAE 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE LQL G + EIA+ L +S TV ++ KL+ +R QA AIR Sbjct: 159 ALTKREIDVLQLLAYGKQNHEIAKILCVSEGTVKTHIHKILQKLEVTDRTQAAVMAIRQK 218 Query: 233 YI 234 + Sbjct: 219 IV 220 >gi|331699942|ref|YP_004336181.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954631|gb|AEA28328.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 221 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK------KRSSA 170 L +G+++ + L + V + A G ++I F+ R Sbjct: 94 LAAGASGFLLKHAPATDLLHAVRVVAAGEALLAPEVTRRLIAHFVAARPDPAAAGPRPDR 153 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RET L L G ++ EIA+ L L+ TV ++ KL +R QA+ A Sbjct: 154 LAPLTDRETEVLGLVARGLSNTEIADALVLAEQTVKTHVSRIFGKLGLRDRAQAVVVAYE 213 Query: 231 FGYI 234 G + Sbjct: 214 CGLV 217 >gi|222148404|ref|YP_002549361.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|68449749|gb|AAY97861.1| AvsR [Agrobacterium vitis] gi|221735392|gb|ACM36355.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 246 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 8/166 (4%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + L + + P+ + + E L +L LP +++P+ + + Sbjct: 77 NVLSQLSRAMEPVDMHDL--AQLSEEGLLLRSKLRDLPLPRQAVSYPLLSVDGRGAILAI 134 Query: 135 TSEFLMLANEVIIEAHGACYQVIT-DFLELFKKRSSAAR-----NLTERETSCLQLAGDG 188 S H ++ F KR R LT RE L+ G Sbjct: 135 ASNACEEEWRRFRRCHDRDIHLLAGKFHAGLVKRCDGTRLGGVPTLTRREQETLRWTAAG 194 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E A LG+S TV ++ +A KLDAV+ QA+AKA++ G I Sbjct: 195 KSYWETAVILGISERTVRYFMANARTKLDAVSNTQAVAKALQRGLI 240 >gi|295705373|ref|YP_003598448.1| two-component response regulator [Bacillus megaterium DSM 319] gi|294803032|gb|ADF40098.1| two-component response regulator [Bacillus megaterium DSM 319] Length = 213 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 8/117 (6%) Query: 124 LGFHKNGYVIFTSEFL-------MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 L GY++ + A + + + +Q++ +F + + L+ Sbjct: 96 LKKGAQGYLLKNLQSEVWYDYLRAFALDEVPMSKEIAFQILKEFPQETSIK-KPDTPLSA 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE LQL G ++ +I+ +L +S HTV ++L + KL NR+Q + A + G Sbjct: 155 RELEVLQLVAKGLSNRDISAQLFISEHTVKSHLKNILSKLHLENRVQLTSYAFQNGL 211 >gi|238895474|ref|YP_002920209.1| DNA-binding transcriptional activator SdiA [Klebsiella pneumoniae NTUH-K2044] gi|262043448|ref|ZP_06016571.1| regulatory protein SdiA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330001006|ref|ZP_08303866.1| regulatory protein SdiA [Klebsiella sp. MS 92-3] gi|238547791|dbj|BAH64142.1| LuxR/UhpA-family transcriptional activator for cell division [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039190|gb|EEW40338.1| regulatory protein SdiA [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328537810|gb|EGF64005.1| regulatory protein SdiA [Klebsiella sp. MS 92-3] Length = 240 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 75/227 (33%), Gaps = 24/227 (10%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 +L+Q +A + YT+ P + + P + Y + F Sbjct: 26 VYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTF-------QSTYPRAWMSHYQAENYFA 78 Query: 80 FNSGLLP-------IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 + L P + W + ++ + GL G+ + L H G++ Sbjct: 79 IDPVLRPENFMRGHLPWN---DSLFRDAPALWDGARDHGLQ--KGVTQCLTLPNHAQGFL 133 Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-----SAARNLTERETSCLQLAGD 187 ++ + E + L + + RE L+ + Sbjct: 134 SVSANNRLPGGYPEDELELRLRTLTELSLLTLLRLEDEMVMPPEMKFSRRELEILKWTAE 193 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS E+A L +S +TVN + + K +A N+ Q A+ G I Sbjct: 194 GKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240 >gi|251794754|ref|YP_003009485.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542380|gb|ACS99398.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 200 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 53/109 (48%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ S L+ + G + I+ L L A LTERE L+LA Sbjct: 95 AGVKGFLLKDSPIDELSAALRNVYAGK--RAISPELALSF--WEAENPLTEREREVLRLA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G + EIA +L LS TV YL A KLDA NRI AI A + G++ Sbjct: 151 REGLPAGEIASRLFLSAGTVRNYLSEAIQKLDAKNRIDAIGIAEKNGWL 199 >gi|319947541|ref|ZP_08021771.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] gi|319746229|gb|EFV98492.1| DNA-binding response regulator [Streptococcus australis ATCC 700641] Length = 211 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 3/117 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L GY++ TS + + G A ++ +E K +LT RE Sbjct: 92 PV-LDAGAKGYMLKTSSAEEILRAIHKVEQGELAIETEVSQKVEYRKNHVELHDDLTARE 150 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 151 RDILALLTKGYENQRIADELFISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLVS 207 >gi|319762877|ref|YP_004126814.1| regulatory protein luxr [Alicycliphilus denitrificans BC] gi|330824956|ref|YP_004388259.1| two component LuxR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|317117438|gb|ADU99926.1| regulatory protein LuxR [Alicycliphilus denitrificans BC] gi|329310328|gb|AEB84743.1| two component transcriptional regulator, LuxR family [Alicycliphilus denitrificans K601] Length = 264 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 14/121 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----------R 172 GY++ S F V+ A+G + L+ F + ++ A Sbjct: 143 GATGYLVKNSWFGSYPQAVLQVANGGASITPHLARRLLQRFDRAAAPATHEQQQDERETE 202 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L++ GYTS EI +L +S TVN ++ + KL R QA+ A G Sbjct: 203 RLSQREKEVLRMVASGYTSAEIGTRLLISSLTVNTHIKNIYRKLQVRTRAQAVRFASLRG 262 Query: 233 Y 233 Sbjct: 263 L 263 >gi|218247165|ref|YP_002372536.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257060237|ref|YP_003138125.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167643|gb|ACK66380.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256590403|gb|ACV01290.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 226 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 40/63 (63%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE LQL DGY++ +I+E+L ++V TV ++ + KL A +R QA +A+R G Sbjct: 164 PLTERELEVLQLIVDGYSNAQISEQLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 223 Query: 233 YIC 235 + Sbjct: 224 LVA 226 >gi|157150612|ref|YP_001449919.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075406|gb|ABV10089.1| response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 214 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 3/116 (2%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV L GY++ TS + V A G A ++ ++ + +LT RE Sbjct: 95 PV-LDAGAKGYMLKTSSADEILYAVRKVARGEVAIETEVSKKVQHHRNHIELHDDLTARE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L GY ++ IA++L +S+ TV ++ + KL+ +R QA+ A + + Sbjct: 154 RDILGLLAKGYENQRIADELYISLKTVKTHVSNILSKLEVSDRTQAVVYAFQHHLV 209 >gi|225628596|ref|ZP_03786630.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo] gi|225616442|gb|EEH13490.1| LuxR family transcriptional regulator [Brucella ceti str. Cudo] Length = 268 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 69/187 (36%), Gaps = 15/187 (8%) Query: 63 DIPNILIETYG-------DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 +P + Y D ++ + I ++ + + +L E Sbjct: 73 TLPATWVARYSSKNYFAIDPVFQEDAPYYRNDTRAIARDLKEDADICPAVAELLHDAEKH 132 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF----KKR 167 L IA R G +FT E + + + K Sbjct: 133 GLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDA 192 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A+A Sbjct: 193 NSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVAT 252 Query: 228 AIRFGYI 234 A+ G I Sbjct: 253 ALSLGII 259 >gi|282865368|ref|ZP_06274420.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282559841|gb|EFB65391.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 218 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 LG +G++I S +L + A G +++ L+E Sbjct: 97 LGEGASGFLIKDSGPALLVEAIRAAASGEALVSPAITVRLLRRLNNAVPTSREPHTALSE 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++L G T+ EIA +L +SV TV +LG+ KL A NR++ A A G + Sbjct: 157 REKDLVRLVARGLTNAEIATELTISVGTVKTHLGNVQTKLSARNRVEIAAWAWESGLV 214 >gi|30315261|gb|AAP30848.1|AF503776_1 HalR [Hafnia alvei] Length = 246 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 71/223 (31%), Gaps = 25/223 (11%) Query: 37 TINSALDFPRRQQLICELHNYD--LDSGDIPNILIETYGDDFLFHFNSGLL-------PI 87 S P + N L P+ + Y + L H + +L P Sbjct: 21 RKLSQFGSPEYAYTVVNKKNPSKLLIISSYPDEWVNLYIANNLQHIDPVILTAFKRTSPF 80 Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN---- 143 +W + + L G F + + + + M AN Sbjct: 81 VWDE-NITLMSDLKISKIFSLSKKYNIANGYTFVLHDHLNNLALLSLIIDSNMKANLEEQ 139 Query: 144 ---------EVIIEAHGACYQVITDFLEL--FKKRSSAARNLTERETSCLQLAGDGYTSE 192 ++IE + Y+++ E + + T RE L A G T Sbjct: 140 FSSEKGNLQMLLIEINEQMYRLVQSVSEDKDGSEMGVSKATFTAREHEVLYWASMGNTYA 199 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 EIA +G+SV TV ++G+ KL N QAI + I Sbjct: 200 EIATIIGISVRTVKFHMGNVVSKLGVSNARQAIRLGVELELIT 242 >gi|317049077|ref|YP_004116725.1| LuxR family two component transcriptional regulator [Pantoea sp. At-9b] gi|316950694|gb|ADU70169.1| two component transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 210 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE +L +++ A G +V+ ++L ++ R LTERE L Sbjct: 99 DAGADGYLLKDSEPELLLQQILSGAQGETVFSEVVEEYLANRPHSANPFRELTERELDVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G +++EIA L +S TV ++ + KLD +R+ A Sbjct: 159 QEVARGLSNKEIATTLHISEETVKVHIRNLLRKLDVRSRVAATV 202 >gi|315505714|ref|YP_004084601.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412333|gb|ADU10450.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 221 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR-------N 173 L +G+++ L + + A G + L+ F + A Sbjct: 97 LRAGASGFLLKNVPPEELMAAIRVVAQGDSVVAPSITRRLLDRFAGQLGPAPTADPRLAQ 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G ++ EIA ++ ++ TV ++G KL +R+QA+ A G Sbjct: 157 LTDREREVLLLVAQGLSNAEIAARVHVAEATVKTHVGRILAKLQLRDRVQAVVLAYESGL 216 Query: 234 IC 235 + Sbjct: 217 VT 218 >gi|217959776|ref|YP_002338328.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187] gi|229138969|ref|ZP_04267547.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] gi|217064042|gb|ACJ78292.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH187] gi|228644509|gb|EEL00763.1| DNA-binding response regulator [Bacillus cereus BDRD-ST26] Length = 209 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 4/113 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFK-KRSSAARNLTERET 179 L +GY + + L ++ G ++ L K+ + LT+RE Sbjct: 95 LEAGADGYQLKEVQPEQLVASIVAVHQGNANFHPKITPALLGRSAVKKENPFSMLTKREQ 154 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EVLREIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207 >gi|297191756|ref|ZP_06909154.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151051|gb|EDY65636.2| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 231 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA---RN 173 L +G+++ L + V + A G ++I ++ + + Sbjct: 90 LHAGASGFLLKDVRRDDLVHAVRVVARGDSLLAPSVARRLIEEYTRAVPRVPQPDGRLES 149 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G G ++ EIA +L +S HTV ++G+ KL +RIQA+ A G Sbjct: 150 LTTRERETLLLLGRGLSNAEIAAELVVSEHTVKTHVGNVLAKLALRDRIQAVICAYESGL 209 Query: 234 IC 235 I Sbjct: 210 IA 211 >gi|288934569|ref|YP_003438628.1| LuxR family transcriptional regulator [Klebsiella variicola At-22] gi|288889278|gb|ADC57596.1| transcriptional regulator, LuxR family [Klebsiella variicola At-22] Length = 240 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 78/229 (34%), Gaps = 28/229 (12%) Query: 20 RLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 +L+Q +A + YT+ P + + P + Y + F Sbjct: 26 VYNLLQRETEALEYDYYTLCVRHPVPFTRPRVTF-------QSTYPRAWMSHYQAENYFA 78 Query: 80 FNSGLLP-------IIWQS--IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + L P + W+ ++ + + + GL G+ + L H G Sbjct: 79 IDPVLRPENFMRGHLPWEDGLFRDAAALWEGAR-----DHGLK--KGVTQCLTLPNHAQG 131 Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-----SAARNLTERETSCLQLA 185 ++ ++ + + E + L + + RE L+ Sbjct: 132 FLSVSANNRLPGSYPDDELEMRLRMLTELSLLALLRLEDEMVMPPEMKFSRRELEILKWT 191 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS E+A L +S +TVN + + K +A N+ Q A+ G I Sbjct: 192 AEGKTSAEVAMILSISENTVNFHQKNMQRKFNAPNKTQIACYAVATGLI 240 >gi|302561087|ref|ZP_07313429.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] gi|302478705|gb|EFL41798.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000] Length = 230 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 15/122 (12%) Query: 127 HKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRS--------SAA 171 GY++ ++ L + V A G V+ ++ L + + A Sbjct: 106 GATGYLLKSASTEDLQDAVRRTAVGDPVFTPGLAGLVLGEYRRLASEPAGPAPGDGEPGA 165 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 166 PRLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIER 225 Query: 232 GY 233 G Sbjct: 226 GL 227 >gi|302546480|ref|ZP_07298822.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302464098|gb|EFL27191.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 218 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTER 177 L GYV + LA+ + H + + + + A +LT+R Sbjct: 102 LRAGAAGYVYKDVDPEALASAIRSV-HAGHVVLQPEVADALLSQDEAGGGQGRGGSLTDR 160 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L DG ++ EIA +L LS TV ++ + +KLD +R QA A+R G Sbjct: 161 EREVLGLIADGRSNREIARRLVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGI 216 >gi|24379934|ref|NP_721889.1| putative response regulator [Streptococcus mutans UA159] gi|290580086|ref|YP_003484478.1| putative response regulator [Streptococcus mutans NN2025] gi|24377915|gb|AAN59195.1|AE014986_6 putative response regulator [Streptococcus mutans UA159] gi|254996985|dbj|BAH87586.1| putative response regulator [Streptococcus mutans NN2025] Length = 198 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 4/110 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L H + YV+ L + G EL ++ + + L+ERE LQ Sbjct: 92 LAAHVDAYVLKDRSASELMATIYTVLSGQREY----SPELVEEVTFDSNPLSEREQEVLQ 147 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G +++ IAE+L LS T+ Y+ + KL+A NR A+ A G+ Sbjct: 148 LVAKGASNQTIAEQLFLSNGTIRNYMTAIFNKLNANNRTDAVRIARENGW 197 >gi|320184745|gb|EFW59537.1| DNA-binding transcriptional activator SdiA [Shigella flexneri CDC 796-83] Length = 159 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 10/153 (6%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLA 142 ++W + S Q G+ + L G++ F+ E +L+ Sbjct: 12 LMWNDD-----LFSEAQPLWEAAHAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILS 66 Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLS 201 +E+ ++ + + + L + N ++RE L+ +G TS EIA L +S Sbjct: 67 DELQLKMQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSIS 126 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +TVN + + K++A N+ Q A G I Sbjct: 127 ENTVNFHQKNMQKKINAPNKTQVACYAAATGLI 159 >gi|293394993|ref|ZP_06639281.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera DSM 4582] gi|291422521|gb|EFE95762.1| nitrate/nitrite response regulator protein NarL [Serratia odorifera DSM 4582] Length = 222 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE L + + A G + D+L ++ +LTERE L Sbjct: 111 DAGADGYLLKDSEPEQLLTSIRLAAEGENVISDAVADYLSSRSEQHDPFADLTERELDVL 170 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G +++++A +L +S TV ++ + KLD +R+ A Sbjct: 171 QEVARGMSNKQVAVQLHISEETVKVHIRNMLRKLDVRSRVAATV 214 >gi|271962388|ref|YP_003336584.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505563|gb|ACZ83841.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 217 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 1/111 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQL 184 GY++ S L A G + L + R+ A + L+ RE L+L Sbjct: 100 AGATGYLLKDSPREELLRGARAAARGESVLAPSVAARLMNRMRAPAPQLLSPRELEVLEL 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G T+ E A +L ++ TV ++L + KL +R A+ +A G + Sbjct: 160 VAAGNTNREAAVRLFITEATVKSHLLNIYTKLGVNDRAAAVTEAFNRGLLV 210 >gi|144900206|emb|CAM77070.1| transcriptional activator protein [Magnetospirillum gryphiswaldense MSR-1] Length = 237 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 55/249 (22%), Positives = 77/249 (30%), Gaps = 34/249 (13%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLD 60 M+E L + SS Q+ L + FA L+ P +D Sbjct: 8 MTEELLWVEDISSAQD---SLRRLAKLANVDFFAYGNSRPGLENPY----------WD-- 52 Query: 61 SGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG-L 112 P +E Y D + LP W+ + S Q + E Sbjct: 53 -ATYPTEWMEHYFANRYQFIDPVVLEAQRSHLPFAWRFLLNRPGAMSPEQKLLFAEAAKY 111 Query: 113 LPFAGIAFPVRLGFHKNGYVIFT----SEFLMLAN-EVIIEAHGACYQ-VITDFLELFKK 166 G P + F +E AN + ++ Y I LE+ Sbjct: 112 GIRDGFTIPFHSDNGCIAAMSFAFRSRAEMEHFANMQPRLKLLALYYHTAIERLLEV--- 168 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+ E CL DG + EI+ L V + L SA KL A QA+ Sbjct: 169 -EIPDDELSAMERQCLTFLADGRSLWEISGLLHRPESDVTSSLRSARDKLGAATTAQAVH 227 Query: 227 KAIRFGYIC 235 KAI G I Sbjct: 228 KAIAEGLIA 236 >gi|239930904|ref|ZP_04687857.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291439281|ref|ZP_06578671.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342176|gb|EFE69132.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 248 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 126 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 185 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 186 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 245 >gi|256374750|ref|YP_003098410.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255919053|gb|ACU34564.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 215 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---N 173 L +G+++ +E L V A G +V++ + + A R + Sbjct: 94 LRLGASGFLLKDTEPEQLVKAVRDLARGGAVLDPGVAARVLSAVADGERAAEPARRLLSS 153 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L L G G ++ EI L LS TV Y+ S K+ AVNR+QA A R G Sbjct: 154 LSEREREVLVLIGQGMSNAEIGGTLHLSEATVKGYVSSVLGKIGAVNRVQAALVAYRGGL 213 Query: 234 IC 235 I Sbjct: 214 IA 215 >gi|117928597|ref|YP_873148.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649060|gb|ABK53162.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 225 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAAR---NLTERETS 180 GY++ ++ +++ + V G Y + L + +++ +L+ RE Sbjct: 111 AGAQGYLLKSASPVVVTDGVRRVLDGGVYADPAVASLLAAGLRNNASNEGIGDLSSREIE 170 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L DG +++EI ++LGLS TV ++L KL +R + +A A+R G I Sbjct: 171 VLRLVADGRSNKEIGDQLGLSALTVKSHLARIARKLGTGDRAEMVALAMRAGII 224 >gi|119718601|ref|YP_925566.1| regulatory protein, LuxR [Nocardioides sp. JS614] gi|119539262|gb|ABL83879.1| regulatory protein, LuxR [Nocardioides sp. JS614] Length = 1006 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 81/219 (36%), Gaps = 21/219 (9%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD----------FLFHFNS 82 A+ AL R + + D +++++ Y D ++ ++ Sbjct: 791 GAVAQAMPALSAAERASYVGRVDRIHAD----GHVVLQRYSDPSGHWGPEGRAWMKRLDA 846 Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL--- 139 L + W + + +++ F R+ G + T + Sbjct: 847 ETLRVRWLAGIDAPPLDALVDTWRDAAVLFEDFGHAYELARVRTALAGILRATGDLAGGR 906 Query: 140 MLANEVIIEAHGACYQVITDFLE----LFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 L + AH + + D L + S LT RE+ LQL G ++ EIA Sbjct: 907 ELGDLARASAHQLGARPLLDELRSIGSAPARTESVPDALTPRESEVLQLVAQGRSNGEIA 966 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++L +S TV+ ++ + KLDA R +A A A R G I Sbjct: 967 KQLFISAKTVSVHVSNILGKLDASGRTEAAAIARRRGLI 1005 >gi|290958411|ref|YP_003489593.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260647937|emb|CBG71042.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 223 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L +G+++ L + G +++ F + S R+ Sbjct: 95 LKAGASGFMLKDVPPGELLAAIRAVHSGDAVVAPSTTRRLLDRFAPMLPSTGSEPRHKEL 154 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 ERLTEREREVMILVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|220909919|ref|YP_002485230.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866530|gb|ACL46869.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 217 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA--ARNLTERE 178 L + Y I + L + + GA Y Q+ +E K S+ L++RE Sbjct: 102 LSSGADAYCIKGASVDRLLSAIAAAQEGATYLDPQIARQVIEHLKPPSNNNMLGQLSQRE 161 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +GY++ EIA KL LS +T+ ++ KL +R+QA A+R G + Sbjct: 162 LDVLKLMVEGYSNPEIATKLYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRAGLV 217 >gi|254425578|ref|ZP_05039295.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188001|gb|EDX82966.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 209 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GYVI S L V Y I + R A L+ RE LQL Sbjct: 101 AGAKGYVIKGSTSDELLKAVRTVYQNQSY--IPPSVSEKLVRRMGAPTLSTREQEVLQLI 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ +I+ +L ++ TV ++G KL +R QAI +A+ G + Sbjct: 159 AEGKTNLQISAELTIAASTVRFHVGHILDKLGVSDRTQAIVQAVNQGIV 207 >gi|298243753|ref|ZP_06967560.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556807|gb|EFH90671.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 221 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQ 183 GY++ + L + + G + + L + + NLTERE L+ Sbjct: 96 AGAVGYLLKDALAEELCHAIKEVVQGNVHFAPQASIFLLHEVREPNLPENLTEREADVLR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++++IA L + TV ++ KL +R QA A R + Sbjct: 156 LLAQGRSNKDIARHLHIVEDTVKTHVRHILSKLGVQSRTQAALYATRLNLV 206 >gi|328885370|emb|CCA58609.1| Response regulator containing a CheY receiver domain and an HTH DNA-binding domain [Streptomyces venezuelae ATCC 10712] Length = 237 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNL-- 174 L +G+++ L + V + A G +++ + +R++ L Sbjct: 95 LHAGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPSVARRLVEQYTAGGPRRTAPDPRLDV 154 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L L G ++ EIA +L +S HTV ++G+ KL +RIQA+ A G Sbjct: 155 LTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRIQAVICAYETGL 214 Query: 234 IC 235 + Sbjct: 215 VA 216 >gi|304406021|ref|ZP_07387679.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345264|gb|EFM11100.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 201 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 4/105 (3%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +GY++ S LA+ + I A G EL + LTERE + L L DG Sbjct: 99 HGYLLKDSPSEELASSIRIIAGGRRLYA----PELMDEAYGEENPLTEREKAVLVLIADG 154 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++EI+++L ++ T+ Y+ KL NR++AI + G+ Sbjct: 155 KSTKEISKELFITTGTIRNYISVILNKLGVGNRVEAIKQFKEKGW 199 >gi|291298173|ref|YP_003509451.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567393|gb|ADD40358.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 220 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFL-ELFKKRSSAARNLT 175 L +G+++ E L + V A G +++ DF LT Sbjct: 96 LRAGASGFLVKDIEPAELLHAVRQAARGDAPLSPDVARRLMRDFASRPLSPNPVDDERLT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE + LA G +EEIAE+L +S T ++ A +KL +R Q + A G I Sbjct: 156 NREREVVVLAAQGLNNEEIAERLVISPTTAKTHISRAMIKLACRDRTQLVVYAYESGLIT 215 >gi|66045102|ref|YP_234943.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] gi|63255809|gb|AAY36905.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae B728a] Length = 240 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 74/227 (32%), Gaps = 13/227 (5%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + L ++ + + L L N D GD Sbjct: 24 ELDGQTAIENALEWLRRECNSERAMFFQFKGPL------LLTFITSNVDEAWGDAYRQHD 77 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + + + L + WQ + + + L I++ H Sbjct: 78 LIMQDPVIRCYRNQLGFLNWQDAFRQYPVSA---FYDELVDACELLPAISYG--YTNHCR 132 Query: 130 GYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G TS + + E ++ + + +R LT RE LQ A D Sbjct: 133 GADSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWARD 192 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 193 GKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|56962510|ref|YP_174236.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56908748|dbj|BAD63275.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 199 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S LA + G EL LTERE L+L Sbjct: 94 AGVEGYLLKDSPSEDLAAAIRTIMDGRRVYA----PELVDMVYHNETPLTEREEQVLKLI 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+++IA++L ++ TV Y+ KL+ NRI+AI+ + G++ Sbjct: 150 AEGRTTQQIADELKITNGTVRNYVSVILDKLEVGNRIEAISYYQKKGWL 198 >gi|294500004|ref|YP_003563704.1| two-component response regulator [Bacillus megaterium QM B1551] gi|294349941|gb|ADE70270.1| two-component response regulator [Bacillus megaterium QM B1551] Length = 213 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 8/117 (6%) Query: 124 LGFHKNGYVIFTSEFL-------MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 L GY++ + A + + + +Q++ +F + + L+ Sbjct: 96 LKKGAQGYLLKNLQSEVWYDYLRAFALDEVPMSKEIAFQILKEFPQETSI-TKPDTPLSA 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE LQL G ++ +I+ +L +S HTV ++L + KL NR+Q + A + G Sbjct: 155 RELEVLQLVAKGLSNRDISAQLFISEHTVKSHLKNILSKLHLENRVQLTSYAFQNGL 211 >gi|254706324|ref|ZP_05168152.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10] gi|254711385|ref|ZP_05173196.1| regulatory protein LuxR [Brucella pinnipedialis B2/94] gi|256029985|ref|ZP_05443599.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1] gi|256158149|ref|ZP_05456065.1| regulatory protein LuxR [Brucella ceti M490/95/1] gi|256252900|ref|ZP_05458436.1| regulatory protein LuxR [Brucella ceti B1/94] gi|261219988|ref|ZP_05934269.1| regulatory protein LuxR [Brucella ceti B1/94] gi|261313770|ref|ZP_05952967.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10] gi|261318991|ref|ZP_05958188.1| regulatory protein LuxR [Brucella pinnipedialis B2/94] gi|265987006|ref|ZP_06099563.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1] gi|265996667|ref|ZP_06109224.1| regulatory protein LuxR [Brucella ceti M490/95/1] gi|260918572|gb|EEX85225.1| regulatory protein LuxR [Brucella ceti B1/94] gi|261298214|gb|EEY01711.1| regulatory protein LuxR [Brucella pinnipedialis B2/94] gi|261302796|gb|EEY06293.1| regulatory protein LuxR [Brucella pinnipedialis M163/99/10] gi|262550964|gb|EEZ07125.1| regulatory protein LuxR [Brucella ceti M490/95/1] gi|264659203|gb|EEZ29464.1| regulatory protein LuxR [Brucella pinnipedialis M292/94/1] Length = 259 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 45/187 (24%), Positives = 69/187 (36%), Gaps = 15/187 (8%) Query: 63 DIPNILIETYG-------DDFLF----HFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 +P + Y D ++ + I ++ + + +L E Sbjct: 64 TLPATWVARYSSKNYFAIDPVFQEDAPYYRNDTRAIARDLKEDADICPAVAELLHDAEKH 123 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF----KKR 167 L IA R G +FT E + + + K Sbjct: 124 GLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCGCKDA 183 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A+A Sbjct: 184 NSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTSAVAT 243 Query: 228 AIRFGYI 234 A+ G I Sbjct: 244 ALSLGII 250 >gi|186683493|ref|YP_001866689.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465945|gb|ACC81746.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 206 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 54/115 (46%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLTERET 179 L G + TS L + V A G + D +EL R ++ + LT RE Sbjct: 91 LRSGIRGILPSTSTELEIVAAVEAIAFGLVV-LHPDAIELLSIREKVVANPVQTLTPREI 149 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L + G G ++ +A++L +S HTV +L S KL +R +A+A +R G I Sbjct: 150 EVLGMLGSGLGNKAMAKRLQISEHTVKFHLSSIFQKLSVSSRTEAVAVGVRLGLI 204 >gi|322434963|ref|YP_004217175.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321162690|gb|ADW68395.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 209 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + + + H ++ + + + + + RE LQ Sbjct: 101 AGATGYLLKNLLRTELIDTIRVV-HAGRRRMPPELAQQIAEYAMEDAV-SPRELEVLQEV 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++ +A L +S HTV +L S KLDA +R A+ AIR GYI Sbjct: 159 SRGKSNKIVAGDLNISEHTVKNHLKSILSKLDASDRTDAVVIAIRRGYI 207 >gi|299535065|ref|ZP_07048391.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1] gi|298729561|gb|EFI70110.1| hypothetical protein BFZC1_03548 [Lysinibacillus fusiformis ZC1] Length = 376 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 118 IAFPVRLGFHKNGYVIFT--SEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNL 174 I P+ G++ F E E + ++ +K + +L Sbjct: 256 IFIPILCEDQLFGWLTFDQLGEEFDCTKEELTLLEEVGKRLGLFLSRKGEKVEKNTVLHL 315 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE+ L L +GY +++IA L LS HTV Y+ S KL A NR Q +A A R G + Sbjct: 316 TERESMILGLLAEGYDNKKIAGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASAFRLGLL 375 Query: 235 C 235 Sbjct: 376 T 376 >gi|229493950|ref|ZP_04387722.1| two-component system response regulator [Rhodococcus erythropolis SK121] gi|229319227|gb|EEN85076.1| two-component system response regulator [Rhodococcus erythropolis SK121] Length = 239 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 9/225 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S L L ++AR A P + L + D+ + +L + Sbjct: 20 SPAAGAYGILGLCAEELRARGLAYSAAAVTYRDPSTGRHR-ALASSGYDARVLEFLLEDF 78 Query: 72 YGDDFLFHFNS--GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D LF +P+ WQ + +E + + F R Sbjct: 79 VADRNLFGIIREASGVPVFWQDVPRFEQVEMVTDVLRPSGYAEGASVALGFSGREVTGLL 138 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 S + EV+ + AC +V+ D + L + +L+ RE LQL G Sbjct: 139 HMSFADSGVVDRVREVVAASSAACSRVVGDQVALDRV------HLSPREIQVLQLVARGA 192 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIAE+L +S TV +L + VK +R+QA +A ++G I Sbjct: 193 GNVEIAEELFVSRRTVATHLENIFVKTGTNSRVQAAVRAAKWGLI 237 >gi|229819546|ref|YP_002881072.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565459|gb|ACQ79310.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 222 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 55/126 (43%), Gaps = 15/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF--------KKRSSAAR 172 L +G+++ + L + + A G ++ LELF + +SA+ Sbjct: 94 LRAGASGFLLKDTRPADLVDAIRTVASGDAVVSPRITRRMLELFGEYLPQGGDRDTSASD 153 Query: 173 N----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L +G ++ EIA++ +S TV ++G KL +R+QA+ A Sbjct: 154 PRLAELTPRELEVLVAVAEGLSNLEIADRFVVSEATVKTHVGRVLAKLGLRDRVQAVVLA 213 Query: 229 IRFGYI 234 G + Sbjct: 214 YETGLV 219 >gi|114046728|ref|YP_737278.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-7] gi|113888170|gb|ABI42221.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 225 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTER 177 L NG+++ L + A G + + LE ++ S+ A++ L+ER Sbjct: 110 LQAGANGFLLKDVSLDKLLEAIETVAQGG-HLIEPSVLEQMQQSSATAQSVPTHDLLSER 168 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G++++EIA + L+ TV ++ + KLD +R QA+ K ++ I Sbjct: 169 EREILGFMAGGFSNKEIANAVFLAEGTVKNHVSTILTKLDCRDRTQAVLKGLQLSLI 225 >gi|330973265|gb|EGH73331.1| regulatory protein, LuxR [Pseudomonas syringae pv. aceris str. M302273PT] Length = 240 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 74/227 (32%), Gaps = 13/227 (5%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + L ++ + + L L N D GD Sbjct: 24 ELDGQTAIENALEWLRRECNSERAMFFQFKGPL------LLTFITSNVDEAWGDAYRQHD 77 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + + + L + WQ + + + L I++ H Sbjct: 78 LIMQDPVIRCYRNQLGFLNWQDAFRQYPVSA---FYDELVDACELLPAISYG--YTNHCR 132 Query: 130 GYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G TS + + E ++ + + +R LT RE LQ A D Sbjct: 133 GADSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWARD 192 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 193 GKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|21224729|ref|NP_630508.1| two-component system regulatory protein [Streptomyces coelicolor A3(2)] gi|256784115|ref|ZP_05522546.1| two-component system regulatory protein [Streptomyces lividans TK24] gi|289767994|ref|ZP_06527372.1| two-component system response regulator [Streptomyces lividans TK24] gi|21902164|gb|AAM78436.1|AF425994_2 putative two-component regulator [Streptomyces coelicolor A3(2)] gi|3127843|emb|CAA18909.1| putative two-component system regulatory protein [Streptomyces coelicolor A3(2)] gi|289698193|gb|EFD65622.1| two-component system response regulator [Streptomyces lividans TK24] Length = 224 Score = 102 bits (255), Expect = 4e-20, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA--RNL 174 L +G+++ +E L + + AHG +I +F+ RS+A L Sbjct: 99 LRAGASGFLLKDTEPADLLQAIDVVAHGEALLSPSVTRTLIGEFVARPPDRSTAPGLDAL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LA G ++EEIA + +S T ++ A KL A +R Q + A G + Sbjct: 159 TRREREVTALAARGLSNEEIAAHMVISPLTAKTHISRAMTKLGARDRAQLVVFAYESGLV 218 Query: 235 C 235 Sbjct: 219 A 219 >gi|284046383|ref|YP_003396723.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950604|gb|ADB53348.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 224 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSS---AARN 173 L +G+++ + L + V A G Q+I +++ + Sbjct: 94 LRAGASGFLLKDTAPDSLVDAVRTVAAGDALLSPAVTRQLIEHYVQRPTPDAGLTGRLAE 153 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +L G T+ EIA +L L TV ++ S KL NR Q + A G Sbjct: 154 LTPRELDVARLVARGMTNAEIAAELFLGEGTVKTHVTSILSKLALRNRTQIVVAAYESGL 213 Query: 234 I 234 + Sbjct: 214 V 214 >gi|257054297|ref|YP_003132129.1| two component transcriptional regulator, LuxR family [Saccharomonospora viridis DSM 43017] gi|256584169|gb|ACU95302.1| two component transcriptional regulator, LuxR family [Saccharomonospora viridis DSM 43017] Length = 208 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + GYV+ + LA+ + G EL + LT+RE L+ Sbjct: 102 MDAGVTGYVLKDAPIGELADALRKVHAGGTVV----SAELALAAWDHSDQLTDRERELLR 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ +IA +L L+ TV YL +A KL A NR +A A G+I Sbjct: 158 QVADGATNRDIARRLHLAEGTVRNYLSAAMAKLGARNRTEAAKAARERGWI 208 >gi|218662896|ref|ZP_03518826.1| LuxR family transcriptional regulator [Rhizobium etli IE4771] Length = 236 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 2/161 (1%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 F +P+ W + + + + + G +L V Sbjct: 76 PFGLRLRESAVPLAWH-LNDARQWSGLSRRTACPDAAPRDTGGRCHADQLQSTAAALVFL 134 Query: 135 TSEFLMLANEVIIEAHGACYQ-VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + G + + + + + SA L+ RE ++ G TS E Sbjct: 135 FLRRTRRTRPERGQRAGDYHPPALDAYNTVRRNEESAHNALSARELEVVRWTAQGKTSIE 194 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 I + L LS HTVNAY+ +A KLD VNR Q +AKAIR I Sbjct: 195 IGQILTLSDHTVNAYMTNAIKKLDCVNRTQLVAKAIRLKLI 235 >gi|91783993|ref|YP_559199.1| two component LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91687947|gb|ABE31147.1| two component transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 213 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 + +++ + L + + A G ++++ ++ + +LTERE Sbjct: 97 AGAHSFLLKSMSGDALLDTLRRLAEGEAVIHPDVAHRILRSVRTARERVTDPFASLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G ++ I + L +S TV ++G+ KLD +R QA+A A R G I Sbjct: 157 MDVLRALAEGSSNGRIGKMLNISESTVKTHIGNVLAKLDLRDRTQAVAFAWRHGLI 212 >gi|47567457|ref|ZP_00238169.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] gi|47555859|gb|EAL14198.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9241] Length = 218 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDF----LELFKKRSSAAR 172 L +GY++ E +A ++ G Q+I + + + Sbjct: 94 LEQGASGYLLKDMETDAIAQAILTVHSGGAVLPQDITAQIIKELKKTKVAVECTTPEQLA 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R+G Sbjct: 154 QLTEREVDILREIGLGLNNKEIAEKLFITEGTVKNHVSNLISKLELRDRTQAAIYAVRYG 213 Query: 233 Y 233 Sbjct: 214 I 214 >gi|229020635|ref|ZP_04177369.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1273] gi|229026848|ref|ZP_04183176.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1272] gi|228734456|gb|EEL85122.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1272] gi|228740659|gb|EEL90923.1| Two component transcriptional regulator, LuxR [Bacillus cereus AH1273] Length = 215 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----------KKRSSAAR 172 L +GY++ E L + G Q+ D ++ S Sbjct: 95 LKAGASGYILKDVEPDQLVEAIRSAYKGNI-QLHPDVANALLSQTLPEEEKEEEPSIQVD 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 154 VLTARENEVLQLLAKGMSNKEIAAVLVITEKTVKAHVSSILSKLHLSDRTQAALYAVKNG 213 Query: 233 YI 234 + Sbjct: 214 IV 215 >gi|229115351|ref|ZP_04244759.1| Two-component protein Kinase [Bacillus cereus Rock1-3] gi|228668071|gb|EEL23505.1| Two-component protein Kinase [Bacillus cereus Rock1-3] Length = 592 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHGGGTLIDQGMSHKIFEQFDEQNETPQSKATAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y SA KL N+ +A+ KA+ G I Sbjct: 532 TAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKLGVRNKEEAVQKALEIGII 591 >gi|170694163|ref|ZP_02885318.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] gi|170140903|gb|EDT09076.1| transcriptional regulator, LuxR family [Burkholderia graminis C4D1M] Length = 262 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 57/181 (31%), Gaps = 5/181 (2%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 Y D D P W I + + + + G Sbjct: 83 RYPQDWVRYYQRRDYASTDPVHRAAFLQSAPFRWHDI---IGLSKAERRLLDEAGEAGLR 139 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIE-AHGACYQVITDFLELFKKRSSAARNL 174 AG++ PV + + + + A+ Q + L S +L Sbjct: 140 AGLSIPVHQSDGSILLFNLSGPLRSVNDTINSRLAYLISVQFHYELHRLALIPSRRMAHL 199 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T R+ CL G TS EI E LG S +TV ++ A L+ +R A A G Sbjct: 200 LTARQLECLTWVARGKTSAEIGEILGRSRYTVEFHIKEAMDALNIRSRTAAAVHATVQGI 259 Query: 234 I 234 I Sbjct: 260 I 260 >gi|240949973|ref|ZP_04754289.1| nitrate/nitrite response regulator protein [Actinobacillus minor NM305] gi|240295573|gb|EER46299.1| nitrate/nitrite response regulator protein [Actinobacillus minor NM305] Length = 209 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 4/113 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 + +GY++ S+ L + A G + L + ++ LT+RE Sbjct: 97 MDAGVDGYLLKDSDTAELVENIQKAARGEMVLSDAVRKHLLEHRPQADPLATLTDRERDV 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA--KAIRFG 232 LQ G ++++IA +L +S TV ++ + KL+ +R+ A A + G Sbjct: 157 LQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLAQQKG 209 >gi|21230586|ref|NP_636503.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769421|ref|YP_244183.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|188992608|ref|YP_001904618.1| Two-component system regulatory protein [Xanthomonas campestris pv. campestris str. B100] gi|21112164|gb|AAM40427.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66574753|gb|AAY50163.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|167734368|emb|CAP52578.1| Two-component system regulatory protein [Xanthomonas campestris pv. campestris] Length = 213 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKK--RSSAARNL 174 L GY++ L + A G ++++ + + L Sbjct: 94 LKAGAKGYLLKDVSLEQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA + Sbjct: 154 TDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|325920818|ref|ZP_08182719.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325548715|gb|EGD19668.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 213 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--L 174 L GY++ L + A G ++++ + + S R L Sbjct: 94 LKAGAKGYLLKDVSLEQLVGAIRTVAGGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA + Sbjct: 154 TDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|311070407|ref|YP_003975330.1| two-component response regulator YxjM [Bacillus atrophaeus 1942] gi|310870924|gb|ADP34399.1| two-component response regulator (YxjM) [Bacillus atrophaeus 1942] Length = 218 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA--ARNLTE 176 GY++ + L + + + G ++I++ ++ + A T+ Sbjct: 100 AGAVGYLLKDTLPEELIDAIRAASRGEAIFRTVTAAKIISETFRAKQQPYTEKLAEPFTK 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQ G +EEIA+KL +S TV ++ K +A +R QA+ AIR G + Sbjct: 160 RELEVLQQMAYGLRNEEIADKLFVSESTVKTHVHRILQKCEAQDRTQAVVFAIRNGIV 217 >gi|320105355|ref|YP_004180945.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319923876|gb|ADV80951.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 217 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ + L + G + I+ + +A +L+ RET L+ Sbjct: 107 LEAGASGYLLKSMLRTELVVTIREVYEG--RRRISPEISATLSEHLSANDLSPRETEVLR 164 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IA+ L +S TV ++ S KLDA +R QA+ A++ G++ Sbjct: 165 SVAQGRSNRQIADALLISEDTVKGHMKSIMAKLDAGDRTQAVIIAMKRGFL 215 >gi|218514607|ref|ZP_03511447.1| autoinducer transcriptional regulator protein [Rhizobium etli 8C-3] Length = 161 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 8/155 (5%) Query: 85 LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-----EFL 139 LP W ++ E+ L + G+ G + PV + + + ++ Sbjct: 8 LPFDWSEVE--PTPEAYAMLVDAQKHGIGG-NGYSIPVADKAQRRALLSMNARIPADDWA 64 Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 L E + + + + L+ RE CL G ++I+ LG Sbjct: 65 ELVRRCRNEWIEIAHLIHQKAVYELYGENDPVPALSPREIECLHWTALGKDYKDISVILG 124 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S HT YL +A KL A ++A++ I Sbjct: 125 ISEHTTRDYLKTARFKLGCATISAAASRAVQLRII 159 >gi|196229558|ref|ZP_03128423.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226790|gb|EDY21295.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 210 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ ++ L + + A G + + R AA ++++RE LQL Sbjct: 101 AGARGYLLKSAAREELLSAIRAVAAGE-RHLSAALAQRLAGR-VAAPDVSDREREVLQLI 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++EIA LG+S TV + + VK+ +R QA ++ IR G I Sbjct: 159 ARGKANKEIAAALGISEETVKRHASNLFVKMGVADRAQATSEGIRRGLI 207 >gi|15613763|ref|NP_242066.1| two-component response regulator [Bacillus halodurans C-125] gi|10173816|dbj|BAB04919.1| two-component response regulator [Bacillus halodurans C-125] Length = 209 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 5/120 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA-ARNL 174 +PV + Y++ TS +A+ + A+G +V +E + R L Sbjct: 90 VYPV-IEAGAFSYLLKTSSAKEIASAIRAAANGEAVVEAKVTNKMMERMRSRKKELHEEL 148 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L G+G +++ IA++L + + TV ++ + KL +R Q A R + Sbjct: 149 TPRELEVLRLIGEGKSNQGIADELYIGIKTVKTHVSNILHKLQLEDRTQIAVYAHRHRLV 208 >gi|218441961|ref|YP_002380290.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218174689|gb|ACK73422.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 210 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARNLTE 176 L + Y + + L + GA Y V+++ +++ NL+E Sbjct: 93 LSSGADAYCVKGASLDRLLAAIDAAKDGATYLDPLIARLVLSNLKAPIPQQNLNISNLSE 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G ++ EIAE+L LS +T+ ++ KL +R+QA A+R G + Sbjct: 153 RELEVLKLIVEGKSNNEIAEELYLSTNTIKTHVRGIMNKLAVDDRVQAAVVALRSGIV 210 >gi|89097699|ref|ZP_01170587.1| YhcZ [Bacillus sp. NRRL B-14911] gi|89087558|gb|EAR66671.1| YhcZ [Bacillus sp. NRRL B-14911] Length = 211 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L +GY + E L ++ G A +++ KK+ S LT+ Sbjct: 95 LEAGASGYQLKDIEPDELVKAIVQVTQGENQLHPKATSHLLSHLSNKDKKK-SPIDELTK 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G +++EIA L ++ TV ++ + KL+ +R QA A+R + Sbjct: 154 RELDVLKEIAKGKSNKEIAASLFITEKTVKTHVSNLLSKLEISDRTQAALLAVREKLV 211 >gi|328949883|ref|YP_004367218.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328450207|gb|AEB11108.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 208 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCL 182 GYV ++ L + V+ G Y ++++ + LTERE + Sbjct: 96 AGGQGYVPKSAVEAELVDAVLAVVRGEYYAPARLLSRVAREMANPHAREAKLTERELEVV 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +G T +EIAE LG+S TV Y A KL R + + A+ G + Sbjct: 156 RQIAEGKTYKEIAEHLGISEKTVATYRERAAEKLGLKTRAELVRWALERGLL 207 >gi|322433940|ref|YP_004216152.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321161667|gb|ADW67372.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 190 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 53/111 (47%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ LA+ V G + D + S+ A LT+RE LQ Sbjct: 83 LDAGASGYLLKDRPASELADAVRRVHRGLR---VVDPALATEAWSAEADPLTDRERQILQ 139 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AG+G +S EIA +L LS TV YL A KL A NR+ A A G++ Sbjct: 140 RAGEGRSSGEIAGELRLSEGTVRNYLSEAISKLGAANRVDAARIARAKGWL 190 >gi|269796274|ref|YP_003315729.1| two component transcriptional regulator, LuxR family [Sanguibacter keddieii DSM 10542] gi|269098459|gb|ACZ22895.1| two component transcriptional regulator, LuxR family [Sanguibacter keddieii DSM 10542] Length = 234 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 42/109 (38%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + A G + L + S A LT RE L+ Sbjct: 123 AGATGYLLKDTPRAELVAGIREAARGQTVLTPSVATRLVSQVGSRADRLTPREVEVLRAV 182 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ + +L +S TV +L A KL +R A+ A G + Sbjct: 183 ARGLSNAAVGHELFISETTVKTHLIRAFGKLGVNDRTHAVTVATDRGLL 231 >gi|113969495|ref|YP_733288.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-4] gi|113884179|gb|ABI38231.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-4] Length = 225 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTER 177 L NG+++ L + I A G + + LE ++ S+ A++ L+ER Sbjct: 110 LQAGANGFLLKDVSLDKLLEAIEIVAQGG-HLIEPSVLEQMQQSSATAQSGPTHYLLSER 168 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G++++EIA + L+ TV ++ + KLD +R QA+ K ++ I Sbjct: 169 EREILGFMAGGFSNKEIANAVFLAEGTVKNHVSTILAKLDCRDRTQAVLKGLQLSLI 225 >gi|317506595|ref|ZP_07964387.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316255104|gb|EFV14382.1| response regulator receiver domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 218 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 50/120 (41%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA-----ARNLT 175 L G+++ S L V A G + V L ++ SA + LT Sbjct: 97 LRAGAAGFILKDSPAEDLIWAVRAVAGGDGFLDPAVTARVLAAYRTAPSARQKQASDKLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L G + EIAE+L +S TV +++G KL +R AI A G + Sbjct: 157 ARELEVLRLIARGANNTEIAERLFISEVTVKSHIGRIFAKLGLRDRAAAIVYAYDQGVVT 216 >gi|16080942|ref|NP_391770.1| two-component response regulator YxjM [Bacillus subtilis subsp. subtilis str. 168] gi|221311860|ref|ZP_03593707.1| hypothetical protein Bsubs1_20996 [Bacillus subtilis subsp. subtilis str. 168] gi|221316184|ref|ZP_03597989.1| hypothetical protein BsubsN3_20907 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221321096|ref|ZP_03602390.1| hypothetical protein BsubsJ_20855 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325380|ref|ZP_03606674.1| hypothetical protein BsubsS_21006 [Bacillus subtilis subsp. subtilis str. SMY] gi|20141933|sp|P55184|YXJL_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yxjL gi|1783236|dbj|BAA11713.1| yxjL [Bacillus subtilis] gi|2636426|emb|CAB15917.1| two-component response regulator [YxjM] [Bacillus subtilis subsp. subtilis str. 168] Length = 218 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA--ARNLTE 176 GY++ + L + + A G ++I++ ++ + A T+ Sbjct: 100 AGAVGYLLKDTLPEELIDAIRAAARGEAIFRTVTAAKIISETFRAKQQTHAEELAEPFTK 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQ G +E+IAEKL +S TV ++ K +A +R QA+ AIR G + Sbjct: 160 RELEVLQQMAYGLRNEDIAEKLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217 >gi|328950846|ref|YP_004368181.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] gi|328451170|gb|AEB12071.1| two component transcriptional regulator, LuxR family [Marinithermus hydrothermalis DSM 14884] Length = 192 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 10/109 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + Y+ LA V+ A G + + LT RE L L Sbjct: 94 AGADAYLSKEVSPAELARRVLDLAEGRAGRFV----------PPPVPELTAREREVLTLL 143 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++E+A L LS TV +L KLDA R++A+ +A + G I Sbjct: 144 ARGMTAKEMARYLNLSPDTVRDHLKRLYGKLDARGRVEALVRARQLGLI 192 >gi|238061662|ref|ZP_04606371.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883473|gb|EEP72301.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 223 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L +G+++ L V + G + +E F +R + Sbjct: 97 LTAGASGFLLKDVSPEYLVAAVRLVRSGDALLAPAITRRLVERFARRDTDTPAIHRDLSA 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G ++ E+AE+L LS TV +++ KL +R+QA+ A R G Sbjct: 157 LTARELEVLRLLAEGLSNAELAERLHLSEATVKSHVARILAKLGLRDRVQAVVVAYRTG 215 >gi|332968686|gb|EGK07738.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 215 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK--KRSSAARNLTE 176 GY + E L + G A ++ F + LT Sbjct: 97 AGAEGYQLKEIEAEELVATIRAAHQGKTQLHPQAAGHLVQQFTSESTGFREQDGLEVLTP 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+L +G +++EIA L ++ TV ++ KLD +R QA A++ G+ Sbjct: 157 REQEVLRLITEGMSNKEIAANLVIAEKTVKTHVSGILNKLDLQDRTQAAIHAMKQGW 213 >gi|326334296|ref|ZP_08200514.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325947905|gb|EGD40027.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 211 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 47/110 (42%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ + L + A G + L ++ +S A ++ RE L+L Sbjct: 100 DAGAAGYLLKDAPPDELFRAIRGTARGETVLAPSVATRLLQRAASPAPKVSPREVEILRL 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++E+A +L +S TV ++L KL R A+A AI + Sbjct: 160 LAKGLGNKEMARELLVSEATVKSHLSHIYTKLGVDTRAGAVATAIERRIL 209 >gi|295695123|ref|YP_003588361.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295410725|gb|ADG05217.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 216 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 8/112 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSA-ARNLTERE 178 GY++ + + + + A GA +++T + ++ A+ LT RE Sbjct: 98 GAQGYLVKSLDPSDWISYLRAVADGASPIAEEVAARLVTTLAAPAQGSAAEVAKRLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L L G ++ EIA+ L +S +TV +L + KLD NR Q A A+R Sbjct: 158 REILGLIARGRSNREIAQALTISENTVKNHLKNIMAKLDVKNRAQLAALAVR 209 >gi|182440789|ref|YP_001828508.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178469305|dbj|BAG23825.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 224 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFK--KRSSAAR-- 172 L +G+++ + + LA V I A G ++I +F L KR + R Sbjct: 96 LRAGASGFLLKNASGVELAEAVRIVAAGEALLSPEITKRLIAEFSRLSTSTKRPTQVRID 155 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L L G ++ EIA +L ++ TV ++G KL +R QA A G Sbjct: 156 ELTHRETEVLALVAQGLSNAEIAGELVVAEQTVKTHMGRILQKLQLRDRTQAAVFAYETG 215 Query: 233 YIC 235 + Sbjct: 216 LVT 218 >gi|152967753|ref|YP_001363537.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151362270|gb|ABS05273.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 236 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 13/122 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRS------SAAR 172 NGY++ +A+ + G ++ +F + ++ A Sbjct: 112 AGANGYLLKDVPAEEVADAIRAVVTGQSLITPKMAGLLLGEFNAMRRRDEERNLGLPGAP 171 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L G + EIA LG+S +TV ++ + KL +R++A+ A+R Sbjct: 172 RLSPRELDVLRLLARGMANREIAGSLGISENTVKNHVRNILEKLQLHSRMEAVVYAVREK 231 Query: 233 YI 234 + Sbjct: 232 IV 233 >gi|325289912|ref|YP_004266093.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] gi|324965313|gb|ADY56092.1| two component transcriptional regulator, LuxR family [Syntrophobotulus glycolicus DSM 8271] Length = 212 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 51/116 (43%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERE 178 L GY++ L N + G + +L + S+ ++N L++RE Sbjct: 94 LQTGVAGYLLKDVFPKTLVNSIRKVYSGEPILAPSVTGKLLGQISTPSKNKNSFGLSKRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G +++EI L +S TV +L + KL+ +R QA KA++ + Sbjct: 154 MEILRAVARGSSNKEIGISLYISEKTVKNHLSNIFRKLEVEDRTQAAIKAVKLNLV 209 >gi|294853143|ref|ZP_06793815.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR [Brucella sp. NVSL 07-0026] gi|294818798|gb|EFG35798.1| HTH-type quorum sensing-dependent transcriptional regulator vjbR [Brucella sp. NVSL 07-0026] Length = 268 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 68/191 (35%), Gaps = 23/191 (12%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG----- 117 +P + Y F + P+ + S+ ++ + + P Sbjct: 73 TLPATWVARYSSKNYFAID----PVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHD 128 Query: 118 ----------IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--- 164 IA R G +FT E + + + Sbjct: 129 AEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCG 188 Query: 165 -KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR Sbjct: 189 CKDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTS 248 Query: 224 AIAKAIRFGYI 234 A+A A+ G I Sbjct: 249 AVATALSLGII 259 >gi|152974058|ref|YP_001373575.1| two component LuxR family transcriptional regulator [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022810|gb|ABS20580.1| two component transcriptional regulator, LuxR family [Bacillus cytotoxicus NVH 391-98] Length = 220 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA----- 171 L +GY++ E + ++ G Q++ + +S Sbjct: 94 LEQGASGYLLKDMETDAIVQAILTVHGGGAVLPQDITAQIVKELKRTKVVDTSEQSVPNQ 153 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L+ G G ++EIAEKL ++ TV ++ + KL+ +R QA A+R Sbjct: 154 IEQLTEREIDVLREIGLGLNNKEIAEKLFITEGTVKNHVSNLIGKLELRDRTQAAIYAVR 213 Query: 231 FGY 233 +G Sbjct: 214 YGI 216 >gi|73748274|ref|YP_307513.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|147669054|ref|YP_001213872.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432323|ref|YP_003462196.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT] gi|73659990|emb|CAI82597.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] gi|146270002|gb|ABQ16994.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] gi|288946043|gb|ADC73740.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. GT] Length = 232 Score = 102 bits (254), Expect = 4e-20, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK--RSSAARNL 174 L +GY++ +++ + + G A +++ + + K+ L Sbjct: 96 LEAGASGYLLKSAKSDEIVGAIRAIKAGESVLDSVATRKLLERVVNVSKESDEDKVRGQL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE LQLA G ++ EIA+KL LS+ TV A+L + K+ R +AI K R GY+ Sbjct: 156 SPREIEILQLASKGLSNREIADKLTLSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREGYV 215 >gi|313158308|gb|EFR57710.1| response regulator receiver domain protein [Alistipes sp. HGB5] Length = 211 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFL-ELFKKRSSAARNLTERETSC 181 G+++ S+ + + G Y Q+++ + + L+ RE Sbjct: 97 AGARGFLLKDSDIGDVIEAIDAVMSGGSYFSPQLLSSLTGRMRTRDDVPDEQLSVREREI 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EIA++L +S TV+ + + K N + AIR G + Sbjct: 157 LVAVCRGLSNQEIADELFISKRTVDKHRANILEKTGCKNTASLVVYAIRNGIV 209 >gi|118477693|ref|YP_894844.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118416918|gb|ABK85337.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 221 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 4/113 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFK-KRSSAARNLTERET 179 L +GY + + L +I G +V L K+ + LT+RE Sbjct: 107 LEAGADGYQLKEVQPEQLVASIIAIYEGNANFHPKVTPALLGRSAVKKENPFSMLTKREQ 166 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 167 EVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 219 >gi|71068204|gb|AAZ23059.1| probable putative response regulator [Streptomyces fradiae] Length = 227 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L +G+++ + L V + A G V + F K+ A Sbjct: 99 LRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTRRLIAEFAKQRPATARGNPALRL 158 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RET L L G +++EIA +L L+ TV ++G KL +R QA+ A Sbjct: 159 NGLTPRETEVLGLIARGLSNQEIAGRLVLAEQTVKTHVGRVLAKLTLRDRAQAVVFAYES 218 Query: 232 GYIC 235 G + Sbjct: 219 GLVA 222 >gi|163846970|ref|YP_001635014.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222524791|ref|YP_002569262.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668259|gb|ABY34625.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448670|gb|ACM52936.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 218 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 14/121 (11%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN-------- 173 GY++ + +LA+ + A G Q+I L + Sbjct: 96 AAGARGYLLKDVDHRVLADSIRTVAGGGALIHPQIIAQLLPRLASLAPTPVTASSSPSDV 155 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+L GYT++EI E+L LSV TV +L KL +R QA A Sbjct: 156 TSILTPRERDILRLLAQGYTNQEIGEQLALSVGTVKNHLSVIFAKLAVRDRTQAALWARE 215 Query: 231 F 231 Sbjct: 216 H 216 >gi|148558318|ref|YP_001257186.1| LuxR family transcriptional regulator [Brucella ovis ATCC 25840] gi|148369603|gb|ABQ62475.1| transcriptional regulator, LuxR family [Brucella ovis ATCC 25840] Length = 268 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 68/191 (35%), Gaps = 23/191 (12%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG----- 117 +P + Y F + P+ + S+ ++ + + P Sbjct: 73 TLPATWVARYSSKNYFAID----PVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHD 128 Query: 118 ----------IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--- 164 IA R G +FT E + + + Sbjct: 129 AEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCG 188 Query: 165 -KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR Sbjct: 189 CKDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTS 248 Query: 224 AIAKAIRFGYI 234 A+A A+ G I Sbjct: 249 AVATALSLGII 259 >gi|332671033|ref|YP_004454041.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340071|gb|AEE46654.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 237 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 16/125 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----------------KRSS 169 +G+++ + + + HG + L + Sbjct: 109 AGASGFLLKDAPPEEMLAAIRTVHHGDAVIAPSSTRRLLEHLITALPPDAPGAAADPARR 168 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LTERE L L G ++ EI + L ++ TV ++G KL A +R+QA+ A Sbjct: 169 AVADLTEREREVLVLMAKGRSNTEIGQDLFVAEATVKTHVGRILAKLGARDRVQAVVTAY 228 Query: 230 RFGYI 234 G + Sbjct: 229 ETGLV 233 >gi|313606801|gb|EFR83477.1| transcriptional regulatory protein DegU [Listeria monocytogenes FSL F2-208] Length = 127 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 20/124 (16%) Query: 131 YVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS-------------A 170 Y++ + L V I +G Y ++I ++ L +S Sbjct: 1 YLLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGVYGYQQPEVKMP 60 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI+ Sbjct: 61 LHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIK 120 Query: 231 FGYI 234 G++ Sbjct: 121 HGWV 124 >gi|322432955|ref|YP_004210204.1| LuxR family transcriptional regulator [Acidobacterium sp. MP5ACTX9] gi|321165182|gb|ADW70886.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 210 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 2/108 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY++ + L + + H ++ + + + L+ RE L+ Sbjct: 102 GASGYLLKSMLRAELIDTIRRV-HAGQRRIPPEIAAEMAEH-AGDDILSAREIEVLRHVA 159 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++ IA L LS HTV ++ + KL A +R A+ A+R G++ Sbjct: 160 AGNSNKIIASNLTLSEHTVKGHIKNILSKLGASDRTHAVMIALRRGFL 207 >gi|229102538|ref|ZP_04233243.1| Two-component protein Kinase [Bacillus cereus Rock3-28] gi|228680860|gb|EEL35032.1| Two-component protein Kinase [Bacillus cereus Rock3-28] Length = 592 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHSGGTLIDQGMSHKIFEQFDEQNETPQSKATAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y SA KL N+ +A+ KA+ G I Sbjct: 532 TAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKLGVRNKEEAVQKALEIGII 591 >gi|148271583|ref|YP_001221144.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829513|emb|CAN00426.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 245 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 55/130 (42%), Gaps = 18/130 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------- 173 L +G+V+ ++ L V + A G V +E F + + A + Sbjct: 112 LDAGASGFVLKSASPESLVEAVHVIARGDALLSPDVTRRVIERFGRGPADAASTAPIPTI 171 Query: 174 --------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT+RE L+L +G + EIAE+L L TV ++ +KL +R+QA+ Sbjct: 172 PTDPRVATLTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDRVQAV 231 Query: 226 AKAIRFGYIC 235 A G + Sbjct: 232 VFAYERGIVV 241 >gi|163940056|ref|YP_001644940.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163862253|gb|ABY43312.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 213 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L ++ G +V L + K++ + LT+R Sbjct: 95 LEAGADGYQLKEVQPDQLVASIVAVYQGNANFHPKVTPALLGRSAVKKEKENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|271964056|ref|YP_003338252.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507231|gb|ACZ85509.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 220 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN-----LT 175 L +G+++ S L + + G V T + F R A LT Sbjct: 95 LRAGTSGFLLKVSPPEQLVEAIRVVVGGDALLDPAVTTRVIASFAGRHDPAPPPQLADLT 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G T+ EIA +L + TV ++ +KL +R QA+ A G + Sbjct: 155 PRELEVLRFLARGLTNAEIAGQLFVGEATVKTHVARVLMKLHLRDRAQAVVFAYESGVV 213 >gi|311899082|dbj|BAJ31490.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 215 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 5/112 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERE 178 L GYV + LA + G L + A NLTERE Sbjct: 100 LRAGAAGYVYKDVDPEALAGAIRSVHAGHVLLQPELAAALLAEDVPAPPQGRGGNLTERE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L DG ++ EIA L LS TV ++ + +KLD +R QA A+R Sbjct: 160 REVLSHIADGRSNREIARTLHLSEKTVKTHVSNILMKLDVADRTQAALWAVR 211 >gi|254492498|ref|ZP_05105670.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxidans DMS010] gi|224462390|gb|EEF78667.1| hypothetical protein MDMS009_2840 [Methylophaga thiooxydans DMS010] Length = 215 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------- 173 L +GY++ +F+ + + G + L A Sbjct: 95 LKAGASGYLLKDDDFMDINEAISQMVDGGAPISPSIARYLLNELSIAEPAKPEQKNSPDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L GYTS+EIA+ L LS +TV Y+ + KL N++QA+++A G Sbjct: 155 LSPREKEVLLLVSKGYTSKEIAKMLDLSYYTVREYVSNVYKKLSVKNKMQAVSEATLLGI 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|270308323|ref|YP_003330381.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270154215|gb|ACZ62053.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 232 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS--AARNL 174 L YV+ S L V G Y + I ++E + +S L Sbjct: 94 LRAGARAYVLKDSTSEELVRAVREAMLGHRYLSPPLSEKAIEAYMEKSAEATSLDPYETL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L GYT EIAEKL +S TV + + KLD N+ Q + A++ G I Sbjct: 154 TIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213 >gi|298241349|ref|ZP_06965156.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554403|gb|EFH88267.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS-----AA 171 L GY++ ++ L + + A G + +++ + F S Sbjct: 101 LRAGACGYLLKDTDRETLFHAIRTAARGDIFLQPEVMARILVRTTDAFHPTPSRSQAEGE 160 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L+ G S+EIA +LG+S+ TV ++L S KL +R A+A I+ Sbjct: 161 SELTERERDVLEAVACGERSKEIASRLGISLRTVESHLTSIYAKLGVDSRASAVAVGIKR 220 Query: 232 GYIC 235 G + Sbjct: 221 GLLS 224 >gi|229167101|ref|ZP_04294844.1| DNA-binding response regulator [Bacillus cereus AH621] gi|228616335|gb|EEK73417.1| DNA-binding response regulator [Bacillus cereus AH621] Length = 211 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L ++ G +V L + K++ + LT+R Sbjct: 95 LEAGADGYQLKEVQPDQLVASIVAVYQGNANFHPKVTPALLGRSAVKKEKENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|223041846|ref|ZP_03612034.1| nitrate/nitrite response regulator protein [Actinobacillus minor 202] gi|223017339|gb|EEF15762.1| nitrate/nitrite response regulator protein [Actinobacillus minor 202] Length = 209 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 4/113 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 + +GY++ S+ L + A G + L + ++ LT+RE Sbjct: 97 MDAGVDGYLLKDSDTAELVENIQKAARGETVLSDAVRKHLLEHRPQADPLATLTDRERDV 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA--KAIRFG 232 LQ G ++++IA +L +S TV ++ + KL+ +R+ A A + G Sbjct: 157 LQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATVLYLAQQKG 209 >gi|242279313|ref|YP_002991442.1| LuxR family transcriptional regulator [Desulfovibrio salexigens DSM 2638] gi|242122207|gb|ACS79903.1| two component transcriptional regulator, LuxR family [Desulfovibrio salexigens DSM 2638] Length = 217 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKK-RSSAARNLTER 177 GY++ S L + A +V+++ + + + LT R Sbjct: 99 AGAMGYLLKDSTPDELLEAIRRVHRGEPSLAPDIARKVLSELSQPGEDSETPTPDPLTPR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L+L G +++ IAE++ +S TV ++ S KL NR++A A+R G Sbjct: 159 ELDTLKLVAKGKSNKAIAEEMFVSEATVRTHMTSILSKLHLANRVEATLYALREGI 214 >gi|83589824|ref|YP_429833.1| two component LuxR family transcriptional regulator [Moorella thermoacetica ATCC 39073] gi|83572738|gb|ABC19290.1| two component transcriptional regulator, LuxR family [Moorella thermoacetica ATCC 39073] Length = 222 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 45/118 (38%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAAR-NLT 175 L +GYV+ L V A GA +VI + + LT Sbjct: 99 LRSGVSGYVLKDISAEELVQAVYQVARGARVIHPGVAQKVIGCIQKQKPFTPAPVSIPLT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L G ++ EIA +L +S TV +L K+ +R QA A++ G Sbjct: 159 AREREILIHVSLGKSNREIARELFISEKTVKNHLTHIFHKIGVSDRTQAALYALKHGL 216 >gi|229004659|ref|ZP_04162396.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] gi|228756547|gb|EEM05855.1| Two component transcriptional regulator, LuxR [Bacillus mycoides Rock1-4] Length = 191 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 8/121 (6%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR 172 FP L YV+ E L V G +V+ + + + Sbjct: 63 FPA-LRAGAISYVLKDIEPNQLVETVRRGVQGESIMHPRVAARVVNEIRAMKQASPYPFS 121 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+L G T+ EIAE L +S TV ++ + KL ++R +A A G Sbjct: 122 ELSERELEVLRLIARGLTNAEIAESLFISEKTVKGHVSNILSKLHMLDRTKAAVFAWEQG 181 Query: 233 Y 233 + Sbjct: 182 F 182 >gi|86361169|ref|YP_473056.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86285271|gb|ABC94329.1| transcriptional regulator (activator) protein, LuxR family [Rhizobium etli CFN 42] Length = 241 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 71/190 (37%), Gaps = 15/190 (7%) Query: 58 DLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 L P ++ Y D + G LP+ W + + ++ + Sbjct: 54 PLLMLTYPPEWVKQYRDRDYFSIDPVVRLGRRGFLPVEWSASKWDS--GRAYGFFKEAMA 111 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSE-----FLMLANEVIIEAHGACYQVITDFLELFK 165 + G+ PVR + TS + + + + + + + L Sbjct: 112 FGVGRQGVTLPVRGPQGERSLFTVTSNHPDAYWRQFRMDCMRDLQFLAHHLHDRAMVLAG 171 Query: 166 KRS-SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R + +L+ RE CL++ G+ +++I+ +L +S+ V YL SA KL +A Sbjct: 172 MREIADVAHLSRRELQCLEMTASGFLAKQISARLCISISAVQLYLASARRKLTVATTSEA 231 Query: 225 IAKAIRFGYI 234 +AKA I Sbjct: 232 VAKATALELI 241 >gi|30262277|ref|NP_844654.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. Ames] gi|47527561|ref|YP_018910.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. 'Ames Ancestor'] gi|49185120|ref|YP_028372.1| LuxR family DNA-binding response regulator [Bacillus anthracis str. Sterne] gi|49479552|ref|YP_036377.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52143191|ref|YP_083638.1| response regulator [Bacillus cereus E33L] gi|65319569|ref|ZP_00392528.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacillus anthracis str. A2012] gi|165870591|ref|ZP_02215245.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0488] gi|167632733|ref|ZP_02391059.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0442] gi|167639661|ref|ZP_02397931.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0193] gi|170687057|ref|ZP_02878276.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0465] gi|170706750|ref|ZP_02897209.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0389] gi|177649611|ref|ZP_02932613.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0174] gi|190565731|ref|ZP_03018651.1| DNA-binding response regulator, LuxR family [Bacillus anthracis Tsiankovskii-I] gi|196033705|ref|ZP_03101116.1| DNA-binding response regulator, LuxR family [Bacillus cereus W] gi|196039895|ref|ZP_03107198.1| DNA-binding response regulator, LuxR family [Bacillus cereus NVH0597-99] gi|196046921|ref|ZP_03114142.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB108] gi|218903406|ref|YP_002451240.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820] gi|225864244|ref|YP_002749622.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB102] gi|227814920|ref|YP_002814929.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. CDC 684] gi|228914867|ref|ZP_04078473.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228927331|ref|ZP_04090391.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228933571|ref|ZP_04096421.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228945885|ref|ZP_04108228.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229121819|ref|ZP_04251039.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|229184493|ref|ZP_04311697.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|229600887|ref|YP_002866616.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0248] gi|254684846|ref|ZP_05148706.1| DNA-binding response regulator [Bacillus anthracis str. CNEVA-9066] gi|254722254|ref|ZP_05184042.1| DNA-binding response regulator [Bacillus anthracis str. A1055] gi|254737292|ref|ZP_05194996.1| DNA-binding response regulator [Bacillus anthracis str. Western North America USA6153] gi|254743522|ref|ZP_05201207.1| DNA-binding response regulator [Bacillus anthracis str. Kruger B] gi|254751608|ref|ZP_05203645.1| DNA-binding response regulator [Bacillus anthracis str. Vollum] gi|254760128|ref|ZP_05212152.1| DNA-binding response regulator [Bacillus anthracis str. Australia 94] gi|30256908|gb|AAP26140.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. Ames] gi|47502709|gb|AAT31385.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. 'Ames Ancestor'] gi|49179047|gb|AAT54423.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. Sterne] gi|49331108|gb|AAT61754.1| response regulator [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51976660|gb|AAU18210.1| response regulator [Bacillus cereus E33L] gi|164713746|gb|EDR19269.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0488] gi|167512370|gb|EDR87746.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0193] gi|167531545|gb|EDR94210.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0442] gi|170128481|gb|EDS97349.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0389] gi|170669108|gb|EDT19852.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0465] gi|172084685|gb|EDT69743.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0174] gi|190563758|gb|EDV17723.1| DNA-binding response regulator, LuxR family [Bacillus anthracis Tsiankovskii-I] gi|195993385|gb|EDX57342.1| DNA-binding response regulator, LuxR family [Bacillus cereus W] gi|196022296|gb|EDX60982.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB108] gi|196029154|gb|EDX67758.1| DNA-binding response regulator, LuxR family [Bacillus cereus NVH0597-99] gi|218535372|gb|ACK87770.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH820] gi|225790573|gb|ACO30790.1| DNA-binding response regulator, LuxR family [Bacillus cereus 03BB102] gi|227003571|gb|ACP13314.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. CDC 684] gi|228598993|gb|EEK56609.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228661608|gb|EEL17228.1| DNA-binding response regulator [Bacillus cereus 95/8201] gi|228813759|gb|EEM60037.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228826031|gb|EEM71814.1| DNA-binding response regulator [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228832343|gb|EEM77920.1| DNA-binding response regulator [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228844783|gb|EEM89828.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265295|gb|ACQ46932.1| DNA-binding response regulator, LuxR family [Bacillus anthracis str. A0248] Length = 209 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 4/113 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFK-KRSSAARNLTERET 179 L +GY + + L +I G +V L K+ + LT+RE Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAIYEGNANFHPKVTPALLGRSAVKKENPFSMLTKREQ 154 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207 >gi|240171004|ref|ZP_04749663.1| two-component transcriptional regulatory protein [Mycobacterium kansasii ATCC 12478] Length = 218 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA--RNLTE 176 GY++ ++ L++ V A G V+ ++ + S +LTE Sbjct: 100 AGATGYLVKSASKAELSDAVRATAAGRAVFTPSLAGLVLGEYRRIATSTDSGPARPSLTE 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+ G ++++IAEKL LS TV ++ + KL NR++ AI G Sbjct: 160 RETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELTRYAIEHGL 216 >gi|229089048|ref|ZP_04220402.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-44] gi|228694270|gb|EEL47892.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock3-44] Length = 215 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN------- 173 L +GY++ E L + G + + L + A Sbjct: 95 LKAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIASSLLSQTLPQEEAEVPSNIHVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++EIA L ++ TV A++ S KL +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEIASVLVITEKTVKAHVSSILSKLQLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|262203353|ref|YP_003274561.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262086700|gb|ACY22668.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 228 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L G+++ S L V + +V+T + + LTE Sbjct: 106 LRAGAAGFILKDSPAESLIWAVRAVVRDGAFLDPAVTGRVLTGYRRSTTGDIATPDELTE 165 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RET L+L G T+ EIA LG+S TV +++ KLD +R AI A + Sbjct: 166 RETDVLRLVARGRTNAEIAAGLGISEVTVKSHINHIFTKLDLRDRAAAIVYAFDHSLV 223 >gi|270307800|ref|YP_003329858.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270153692|gb|ACZ61530.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 232 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK--RSSAARNL 174 L +GY++ +++ + + G A +++ + + K+ L Sbjct: 96 LEAGASGYLLKSAKSDEIVGAIRAIKAGESVLDSIATRKLLERVVNVSKESDEDKVRGQL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE LQLA G ++ EIA+KL LS+ TV A+L + K+ R +AI K R GY+ Sbjct: 156 SPREVEILQLASKGLSNREIADKLTLSMRTVKAHLSNIFNKMRCSCRTEAIVKGFREGYV 215 >gi|88855004|ref|ZP_01129669.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88815532|gb|EAR25389.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 221 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 9/119 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN------LTE 176 +G+++ +E + L V + A G V LE F + S A + +T+ Sbjct: 98 AGASGFLVKDTEPVELIRAVRVVASGDALLSPGVTKRLLERFARGSQVAVDASVLSVITD 157 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L L G G T+ EI KL LS T ++ KL A +R+Q + A G + Sbjct: 158 REREVLALVGQGLTNAEIGVKLFLSPLTAKTHVSRIMAKLAARDRVQLVVIAYETGLVS 216 >gi|330467583|ref|YP_004405326.1| two component system response regulator [Verrucosispora maris AB-18-032] gi|328810554|gb|AEB44726.1| two component system response regulator [Verrucosispora maris AB-18-032] Length = 227 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA--RNL 174 L +G+++ E L V + A G ++I ++ + ++ L Sbjct: 96 LRAGASGFLVKDIEPAALLQAVRVVAAGEALLAPSVTRRLIAEYAARSHEPPASPGLDQL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G T++E+AE++ SV T ++ +KL A +R+Q + A +G + Sbjct: 156 TAREREVLMLIARGLTNQELAERMSCSVATAKTHVSRVMMKLGARDRVQVVVLAYEWGLV 215 >gi|23499883|ref|NP_699323.1| LuxR family transcriptional regulator [Brucella suis 1330] gi|62317073|ref|YP_222926.1| LuxR family transcriptional regulator [Brucella abortus bv. 1 str. 9-941] gi|83269066|ref|YP_418357.1| LuxR family regulatory protein [Brucella melitensis biovar Abortus 2308] gi|161620206|ref|YP_001594092.1| regulatory protein LuxR [Brucella canis ATCC 23365] gi|163844315|ref|YP_001621970.1| hypothetical protein BSUIS_B0125 [Brucella suis ATCC 23445] gi|189022339|ref|YP_001932080.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|225685981|ref|YP_002733953.1| regulatory protein LuxR [Brucella melitensis ATCC 23457] gi|254691441|ref|ZP_05154695.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870] gi|254695262|ref|ZP_05157090.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya] gi|254698360|ref|ZP_05160188.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59] gi|254711984|ref|ZP_05173795.1| regulatory protein LuxR [Brucella ceti M644/93/1] gi|254715054|ref|ZP_05176865.1| regulatory protein LuxR [Brucella ceti M13/05/1] gi|254731805|ref|ZP_05190383.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292] gi|256043041|ref|ZP_05445986.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1] gi|256059638|ref|ZP_05449835.1| regulatory protein LuxR [Brucella neotomae 5K33] gi|256111973|ref|ZP_05452924.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether] gi|256256626|ref|ZP_05462162.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68] gi|256262895|ref|ZP_05465427.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|260544312|ref|ZP_05820133.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260564274|ref|ZP_05834759.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260568545|ref|ZP_05839014.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260757058|ref|ZP_05869406.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870] gi|260759571|ref|ZP_05871919.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292] gi|260762815|ref|ZP_05875147.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59] gi|260882868|ref|ZP_05894482.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68] gi|261215627|ref|ZP_05929908.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya] gi|261216761|ref|ZP_05931042.1| regulatory protein LuxR [Brucella ceti M13/05/1] gi|261319628|ref|ZP_05958825.1| regulatory protein LuxR [Brucella ceti M644/93/1] gi|261323608|ref|ZP_05962805.1| regulatory protein LuxR [Brucella neotomae 5K33] gi|265989480|ref|ZP_06102037.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1] gi|265993421|ref|ZP_06105978.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether] gi|297249982|ref|ZP_06933683.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196] gi|75505158|sp|Q579W9|VJBR_BRUAB RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|81751697|sp|Q8FXF9|VJBR_BRUSU RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|123754460|sp|Q2YJ50|VJBR_BRUA2 RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|190360175|sp|Q8YAY5|VJBR_BRUME RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR gi|23463458|gb|AAN33328.1| transcriptional regulator, LuxR family [Brucella suis 1330] gi|62197266|gb|AAX75565.1| transcriptional regulator, LuxR family [Brucella abortus bv. 1 str. 9-941] gi|82939340|emb|CAJ12284.1| Bacterial regulatory protein, LuxR family [Brucella melitensis biovar Abortus 2308] gi|161337017|gb|ABX63321.1| regulatory protein LuxR [Brucella canis ATCC 23365] gi|163675038|gb|ABY39148.1| Hypothetical protein, conserved [Brucella suis ATCC 23445] gi|189020913|gb|ACD73634.1| Bacterial regulatory protein, LuxR family [Brucella abortus S19] gi|225642086|gb|ACO01999.1| regulatory protein LuxR [Brucella melitensis ATCC 23457] gi|260097583|gb|EEW81457.1| bacterial regulatory protein [Brucella abortus NCTC 8038] gi|260151917|gb|EEW87010.1| bacterial regulatory protein [Brucella melitensis bv. 1 str. 16M] gi|260155210|gb|EEW90291.1| bacterial regulatory protein [Brucella suis bv. 4 str. 40] gi|260669889|gb|EEX56829.1| regulatory protein LuxR [Brucella abortus bv. 4 str. 292] gi|260673236|gb|EEX60057.1| regulatory protein LuxR [Brucella abortus bv. 2 str. 86/8/59] gi|260677166|gb|EEX63987.1| regulatory protein LuxR [Brucella abortus bv. 6 str. 870] gi|260872396|gb|EEX79465.1| regulatory protein LuxR [Brucella abortus bv. 9 str. C68] gi|260917234|gb|EEX84095.1| regulatory protein LuxR [Brucella abortus bv. 3 str. Tulya] gi|260921850|gb|EEX88418.1| regulatory protein LuxR [Brucella ceti M13/05/1] gi|261292318|gb|EEX95814.1| regulatory protein LuxR [Brucella ceti M644/93/1] gi|261299588|gb|EEY03085.1| regulatory protein LuxR [Brucella neotomae 5K33] gi|262764291|gb|EEZ10323.1| regulatory protein LuxR [Brucella melitensis bv. 3 str. Ether] gi|263000149|gb|EEZ12839.1| regulatory protein LuxR [Brucella melitensis bv. 1 str. Rev.1] gi|263092732|gb|EEZ16941.1| bacterial regulatory protein [Brucella melitensis bv. 2 str. 63/9] gi|297173851|gb|EFH33215.1| hypothetical protein BAYG_02758 [Brucella abortus bv. 5 str. B3196] gi|326410305|gb|ADZ67369.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M28] gi|326553598|gb|ADZ88237.1| Bacterial regulatory protein, LuxR family [Brucella melitensis M5-90] Length = 259 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 68/191 (35%), Gaps = 23/191 (12%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG----- 117 +P + Y F + P+ + S+ ++ + + P Sbjct: 64 TLPATWVARYSSKNYFAID----PVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHD 119 Query: 118 ----------IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--- 164 IA R G +FT E + + + Sbjct: 120 AEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCG 179 Query: 165 -KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR Sbjct: 180 CKDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTS 239 Query: 224 AIAKAIRFGYI 234 A+A A+ G I Sbjct: 240 AVATALSLGII 250 >gi|329935958|ref|ZP_08285759.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329304565|gb|EGG48442.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 254 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 132 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 191 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 192 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 251 >gi|330468817|ref|YP_004406560.1| response regulator receiver protein [Verrucosispora maris AB-18-032] gi|328811788|gb|AEB45960.1| response regulator receiver protein [Verrucosispora maris AB-18-032] Length = 211 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTER 177 L GYV+ + + V + A G A + + + A LT R Sbjct: 96 LRAGARGYVLKGARRQEIVRSVRVVADGEAIFGPAIATRLMGYFAGLARNEPAFPELTAR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L T+ +IA + GLS TV ++ + KL +R QAI+ A G Sbjct: 156 EREILTLIAQHLTNPQIAARFGLSTKTVRNHVSNIFAKLQVADRAQAISMAREQGL 211 >gi|289641016|ref|ZP_06473185.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289509136|gb|EFD30066.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 234 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 55/121 (45%), Gaps = 13/121 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA--------CYQVITDFLELFKKRSS----AARN 173 GY++ +A + HG +++++F + KK S Sbjct: 112 AGAMGYLLKEISIDEVATAIRAV-HGGQSLISPSMASKLLSEFALMIKKADSRPQLPTPR 170 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R Sbjct: 171 LTDREMEVLRLVAKGLNNRDIAKQLFISENTVKNHIRNILEKLQLHSRMEAVVYAVREKL 230 Query: 234 I 234 + Sbjct: 231 L 231 >gi|289645062|ref|ZP_06477093.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289505136|gb|EFD26204.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 216 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L +G+V+ +E L + + A G +VI F + LT Sbjct: 96 LRSGASGFVLKDAEPAELLRAIRVVAAGESLLSPTVTRRVIDAFARRPAVHTPDLSGLTA 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE + L G G +++EIA++L +S T ++ VKL A +R Q A + G + Sbjct: 156 REREVMGLVGRGLSNDEIAQRLFISPATARTHVSRVMVKLGARDRAQLAVLANQAGMVT 214 >gi|289523038|ref|ZP_06439892.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503581|gb|EFD24745.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 274 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 5/112 (4%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-----QVITDFLELFKKRSSAARNLTERETSC 181 G ++ +S+ L + + A Y + + L ++ ++ +LT RE Sbjct: 147 GIYGCILKSSKAEDLLSAIRNVAKADPYNDPRLETYKKTVSLIEEDTAQLYHLTPREKEV 206 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G++++ IA+ + LS TV ++ KLD +R QA A + G Sbjct: 207 LYWLSQGFSNQNIAKIMFLSEKTVKNHVSRILKKLDFPDRTQAAVFAWKAGL 258 >gi|229096445|ref|ZP_04227417.1| Two-component protein Kinase [Bacillus cereus Rock3-29] gi|228687007|gb|EEL40913.1| Two-component protein Kinase [Bacillus cereus Rock3-29] Length = 592 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHSGGTLIDQGMSHKIFEQFDEQNETPQSKATAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y SA KL N+ +A+ KA+ G I Sbjct: 532 TAREIEILQLVAKGLRYNTIASRLYLSNGTVRNYASSAYTKLGVRNKEEAVQKALEIGII 591 >gi|111220761|ref|YP_711555.1| putative protein-glutamate methylesterase [Frankia alni ACN14a] gi|111148293|emb|CAJ59965.1| putative Protein-glutamate methylesterase [Frankia alni ACN14a] Length = 237 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS----AARNL 174 GY++ +A ++ + +++++F + K + L Sbjct: 115 AGAMGYLLKEISIDEVAADIRAVYGGQSLISPSMASKLLSEFAAMIKNKDDRPQLPTPRL 174 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 175 TDREMEVLRLVAKGMNNRDIAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKLL 234 >gi|270264592|ref|ZP_06192857.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270041275|gb|EFA14374.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 210 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE L + A G + D+L ++ LTERE L Sbjct: 99 DAGADGYLLKDSEPEQLLEHIRAAAEGQNVISDAVADYLSSRSEQHDPFAELTERELDVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G +++++A +L +S TV ++ + KLD +R+ A Sbjct: 159 QEVARGMSNKQVAAQLHISEETVKVHIRNMLRKLDVRSRVAATV 202 >gi|84496768|ref|ZP_00995622.1| putative respose regulatory protein [Janibacter sp. HTCC2649] gi|84383536|gb|EAP99417.1| putative respose regulatory protein [Janibacter sp. HTCC2649] Length = 217 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 50/109 (45%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + + + A G + + R L+ERE L L Sbjct: 108 AGAAGYLLKDALPDEIIAAIRAAAVGETVLSAQLTQRVVETMRVGQRPLSEREREVLVLV 167 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G +++EIA++L +S TV +L KL+A +R A+A A R G I Sbjct: 168 GEGLSNDEIAKQLFISRATVKTHLRHLFGKLEADSRTGAVATARRLGLI 216 >gi|206558215|sp|A5VTN1|VJBR_BRUO2 RecName: Full=HTH-type quorum sensing-dependent transcriptional regulator vjbR Length = 259 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 68/191 (35%), Gaps = 23/191 (12%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG----- 117 +P + Y F + P+ + S+ ++ + + P Sbjct: 64 TLPATWVARYSSKNYFAID----PVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHD 119 Query: 118 ----------IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--- 164 IA R G +FT E + + + Sbjct: 120 AEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCG 179 Query: 165 -KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR Sbjct: 180 CKDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTS 239 Query: 224 AIAKAIRFGYI 234 A+A A+ G I Sbjct: 240 AVATALSLGII 250 >gi|84497630|ref|ZP_00996452.1| two-component system, regulatory protein [Janibacter sp. HTCC2649] gi|84382518|gb|EAP98400.1| two-component system, regulatory protein [Janibacter sp. HTCC2649] Length = 210 Score = 102 bits (254), Expect = 5e-20, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLA 185 GY++ + +LA+ + A G L ++ R+ A LT RE LQ Sbjct: 97 GARGYLLKDTPPAVLADAIRRAALGETVLAPPVAARLAERLRAPAQVELTPRELDVLQAV 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G ++ E+ +L + TV +L KL+ +R A+ A + G I Sbjct: 157 ARGLSNGEVGRELFIGEATVKTHLLRIFAKLEVTDRTAAVTAAYKIGLIS 206 >gi|320334053|ref|YP_004170764.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755342|gb|ADV67099.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 225 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKR-SSAARNLTE 176 L +GY++ + + L + ++ A G Y +V+ D L ++ + LT Sbjct: 106 LQAGASGYLLKDVDVVTLRDTIVRVARGERYVQPRVAEVLADALSRERRGVTVTPERLTP 165 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RET L L G ++ IA+ L L+ TV ++ + KL A +R+ A+ A G + Sbjct: 166 RETEILALIARGLANKRIAQALTLTEGTVKVHVSNILGKLGATDRLDAVRVAREAGLL 223 >gi|302185070|ref|ZP_07261743.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae 642] Length = 240 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 76/227 (33%), Gaps = 13/227 (5%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + L ++ + + + L N D G+ Sbjct: 24 ELDGQTAIENALEWLRRECNSERAMFFQFKGPV------LLTFITSNVDHAWGEAYRQHD 77 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + + + L + WQ + + + L I++ H Sbjct: 78 LITQDPVIRCYRNQLGFLNWQDAFRQYPVSA---FYDELVDACELLPAISYG--YTNHCR 132 Query: 130 GYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G TS +A + E ++ + + ++R LT RE LQ A D Sbjct: 133 GADSVTSVCTLGEVARTISAEQKYLMSSLMPVLHSVARGLKFSSRGLTHRELEVLQWARD 192 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 193 GKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|254720638|ref|ZP_05182449.1| regulatory protein LuxR [Brucella sp. 83/13] gi|265985682|ref|ZP_06098417.1| regulatory protein LuxR [Brucella sp. 83/13] gi|264664274|gb|EEZ34535.1| regulatory protein LuxR [Brucella sp. 83/13] Length = 259 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 68/191 (35%), Gaps = 23/191 (12%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG----- 117 +P + Y F + P+ + S+ ++ + + P Sbjct: 64 TLPATWVARYSSKNYFAID----PVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHD 119 Query: 118 ----------IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--- 164 IA R G +FT E + + + Sbjct: 120 AEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCG 179 Query: 165 -KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR Sbjct: 180 CKDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTS 239 Query: 224 AIAKAIRFGYI 234 A+A A+ G I Sbjct: 240 AVATALSLGII 250 >gi|254699430|ref|ZP_05161258.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513] gi|261749881|ref|ZP_05993590.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513] gi|261739634|gb|EEY27560.1| regulatory protein LuxR [Brucella suis bv. 5 str. 513] Length = 259 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 68/191 (35%), Gaps = 23/191 (12%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG----- 117 +P + Y F + P+ + S+ ++ + + P Sbjct: 64 TLPATWVARYSSKNYFAID----PVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHD 119 Query: 118 ----------IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--- 164 IA R G +FT E + + + Sbjct: 120 AEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCG 179 Query: 165 -KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR Sbjct: 180 CKDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTS 239 Query: 224 AIAKAIRFGYI 234 A+A A+ G I Sbjct: 240 AVATALSLGII 250 >gi|229133094|ref|ZP_04261931.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228650370|gb|EEL06368.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] Length = 211 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L ++ G +V L + K++ + LT+R Sbjct: 95 LEAGADGYQLKEVQPDQLVASIVAVYQGNANFHPKVTPALLGRSAVKKEKENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|326441393|ref|ZP_08216127.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 250 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 128 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLTEFKSMIQRTDERRLVPAPRL 187 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 188 TDRELEVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 247 >gi|108805307|ref|YP_645244.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766550|gb|ABG05432.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 229 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 16/125 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA------- 171 +GYV+ + L + + + G Q++ + +++ Sbjct: 102 AGASGYVLKEATKQQLVDSIRVTLRGEPSINQELAIQLLRRLAREAHESANSPPAKRLPE 161 Query: 172 --RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L+L G + +IAE L +S TV ++ KL +R QA +AI Sbjct: 162 LCEPLTPREIEILRLLARGLKNRQIAEHLVISPGTVKVHVQHIIAKLGVSDRTQAAVRAI 221 Query: 230 RFGYI 234 G + Sbjct: 222 ELGIL 226 >gi|301057012|gb|ADK54837.1| two component regulator [uncultured soil bacterium] Length = 223 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR---- 172 L +G+++ + LA V + A G ++I +F + + + Sbjct: 97 LRAGASGFLLKDASAAELAQAVRVVAAGDALLAPNITKRLIAEFSRVTVAPRAPVKGRIG 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA +L ++ T ++ +KL +R QA A G Sbjct: 157 ELTERETEVLSLIAQGLSNAEIATRLVVAEQTTKTHVSRILIKLGLRDRTQAAVFAYETG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|300788717|ref|YP_003769008.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299798231|gb|ADJ48606.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 52/111 (46%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L NG+++ + LAN V A G +VI L L + LT RE L Sbjct: 94 LDAKVNGFLLKDAPSDKLANAVRSVAIG--RRVIDSELALA-AWETDDCPLTPREIEILS 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G T +IA +L LS TV YL + KL+A NR+ AI A ++ Sbjct: 151 LAARGRTVSDIASELFLSAGTVRNYLAAVVTKLNARNRVHAIRIATEAEWL 201 >gi|262275905|ref|ZP_06053714.1| nitrate/nitrite response regulator protein [Grimontia hollisae CIP 101886] gi|262219713|gb|EEY71029.1| nitrate/nitrite response regulator protein [Grimontia hollisae CIP 101886] Length = 209 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 2/103 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ SE L ++ G A + + +LE + +S LTERE L+ Sbjct: 98 AGADGYLLKDSEPEELVMQLKSAMTGEKAYSEQVRTYLEKSRDHTSPLSVLTERERQILR 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L G +++IAE L +S TV +L + KL +R+ A Sbjct: 158 LVAKGLRNKQIAETLYISEATVKVHLKNLLKKLGVESRVAATV 200 >gi|108803013|ref|YP_642950.1| two component LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108764256|gb|ABG03138.1| two component transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 212 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 +GY++ + L + G L ++ R+ L+ RE L L Sbjct: 101 AGASGYLLKDAPREELFAAIRAAMAGESPLDPAVASRLMRRVRTPPENALSGREIEVLDL 160 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA +L +S TV +L KL +R A+ AI+ G I Sbjct: 161 VAQGASNREIARQLWISETTVKTHLLHIYEKLGVADRTAAVTAAIKRGII 210 >gi|323464084|gb|ADX76237.1| two-component response regulator [Staphylococcus pseudintermedius ED99] Length = 208 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY + + L + G ++ ++ + L++RET L+ Sbjct: 98 AGADGYEMKDVDPEALMTSIETVLQGDKVIHKDAQQVMDTVITKPHMLNKLSKRETEVLK 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIAE L +S T+ ++ KL+ +R QA A+ + Sbjct: 158 EMAKGKTNKEIAETLFVSEKTIKTHVSHIFSKLEVTDRTQAAIYAMENHLV 208 >gi|302555756|ref|ZP_07308098.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302473374|gb|EFL36467.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 221 Score = 101 bits (253), Expect = 5e-20, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARN-LT 175 L +GYV+ + L GA +I ++L+ + LT Sbjct: 101 LKAGASGYVLKSVADRDLVAACRAAMRDEPFLYPGAVTALIRNYLDRVRHGEEPPEQILT 160 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G++S+EIAE L +S+ TV+ + + KL +R++ AIR G I Sbjct: 161 PREEEVLKLVAEGHSSKEIAEMLFISIKTVHRHRANLLHKLGLRDRLELTRYAIRAGLI 219 >gi|298489796|ref|YP_003719973.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298231714|gb|ADI62850.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 218 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 11/116 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFL--------ELFKKRSSAAR 172 L GY++ + LA + G +++ L + K + Sbjct: 94 LQNGAMGYLLKDTPSEELAVAIRAVDKGFSQLSPEIVKKLLTQFPTTAPDPVKSIPPSLV 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+L +G ++ EIA L +S TV ++ + +L+ +R QA A Sbjct: 154 ELTPREKQVLRLIANGASNREIAHTLYISEGTVKNHVTNILSRLNLRDRTQAAILA 209 >gi|50956580|gb|AAT90827.1| acylhomoserine lactone dependent transcriptional activator [uncultured proteobacterium QS1] Length = 223 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 76/227 (33%), Gaps = 14/227 (6%) Query: 16 ELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDD 75 EL+P L + + N++ Y + + + + NY D + D Sbjct: 3 ELAPSLENALSCLGEFNYSYYVVRKS-----KNTKPIIVSNYPDDWLMLYEARSYHLYDP 57 Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 + + P W Q + +L E + +G F + + Sbjct: 58 VINYGMRRFAPFSWCDAQASDTADIGKELFQSAEKYQIS-SGFTFVLHDAAELFASLSVC 116 Query: 136 -----SEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERETSCLQLAGD 187 S+F + E A L A L+ RE LQ G Sbjct: 117 RSGRGSDFGQRVADHSAEIQMALINFHDHILSTQTVDELFPLPANLLSAREIEILQWVGK 176 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G E+A +S HTV ++ + KL+ +N QA+ +AIR G I Sbjct: 177 GKAYFEVAIICAISEHTVKFHISKISTKLNVLNAKQAVYEAIRRGII 223 >gi|221369733|ref|YP_002520829.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131] gi|221162785|gb|ACM03756.1| Response regulator receiver protein [Rhodobacter sphaeroides KD131] Length = 212 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 71/201 (35%), Gaps = 10/201 (4%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F +++ L + + + D L + +G+ P+IW+S Sbjct: 9 GFQTFSLAYQRPHALEAVTAPYLTTWPCEKDGACDPASARIRDPLLDYAVTGVKPLIWRS 68 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEFLMLANEVIIEAH 150 +++ +R G AG+ P+ + G + + +++ ++ Sbjct: 69 GSWKSLNRKVRFPCLR---GSEARAGLIVPLPDQRGRIGAITMLSAQREDYPEDIAEAGR 125 Query: 151 GACYQVITDFLELF------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 V+ L ++ L+ R+ L G ++ EIA LGLS Sbjct: 126 IVALAVLVRAGSLAPAVGAVSPALASLAQLSPRQIEILDWIAHGKSNSEIALILGLSRRN 185 Query: 205 VNAYLGSATVKLDAVNRIQAI 225 V ++ KLD +R QA+ Sbjct: 186 VTYHVSEILKKLDVTSRTQAV 206 >gi|326382104|ref|ZP_08203797.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] gi|326199530|gb|EGD56711.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] Length = 213 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETSCL 182 GYV+ + L + ++G + L + LT+RE L Sbjct: 102 AGAKGYVVKDVDTTELIRAIRTVSNGGSAFDPRSAAIVLRTVSGEQESTATLTDREHEVL 161 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L DG ++ E+ L +S TV ++ + KL R A+ A + G I Sbjct: 162 KLLADGKSNAEVGRALFISESTVKFHIRNVIRKLGVTKRTDAVYVASKRGLI 213 >gi|213970476|ref|ZP_03398604.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301383864|ref|ZP_07232282.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302060596|ref|ZP_07252137.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302134766|ref|ZP_07260756.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213924794|gb|EEB58361.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 222 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 7/118 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTER 177 GY++ + + + + A G +++ E +SA LT R Sbjct: 98 SAGAVGYLLKDASRDEVIDGLQRVARGEEALNSAVSARLLRRMTERNTSGASAPEALTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L L G+++ EI EKLG++ T A++ KL A +R QA + + G + Sbjct: 158 ERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLVS 215 >gi|229190347|ref|ZP_04317348.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228593131|gb|EEK50949.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] Length = 209 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V + + K+ + LT+R Sbjct: 91 LEAGADGYQLKEVQPEQLVASIIAVQQGNANFHPKVTPALMGRSAVKKEIENPFSMLTKR 150 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 151 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205 >gi|291006817|ref|ZP_06564790.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 215 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 4/112 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCL 182 GYV+ + L + A G + + RSS LTERE L Sbjct: 105 RGARGYVVKDVDTTELVRAIRAVARGESAFDSRSAAAMVHSMNNRSSEPE-LTERELGVL 163 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G ++ +I +L +S T ++ + KLD R +A+ +A + G I Sbjct: 164 RLLAAGSSNRQIGGQLYISETTAKFHVRNIMRKLDVSTRAEAVYEASKRGLI 215 >gi|209528219|ref|ZP_03276686.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209491341|gb|EDZ91729.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 236 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 39/62 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIAEKL ++V TV ++ S KL A +R QA +A+R G Sbjct: 174 PLTERELEVLELIVGGRSNAEIAEKLYITVGTVKTHVRSILNKLCADDRTQAAVRALRSG 233 Query: 233 YI 234 +I Sbjct: 234 WI 235 >gi|169826466|ref|YP_001696624.1| hypothetical protein Bsph_0878 [Lysinibacillus sphaericus C3-41] gi|168990954|gb|ACA38494.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 377 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 3/121 (2%) Query: 118 IAFPVRLGFHKNGYVIFTS---EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 I P+ G++ F EF +E+++ + + K +L Sbjct: 257 IFIPIIQQDQLFGWLTFDQLGEEFDCTKSELLLLEEVGKRLGLFLSRKGEKVEKCTELHL 316 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE+ L L +GY +++I L LS HTV Y+ S KL A NR Q +A A R G + Sbjct: 317 TERESMILGLLAEGYDNKKIGGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASAFRLGLL 376 Query: 235 C 235 Sbjct: 377 S 377 >gi|308186328|ref|YP_003930459.1| Transcriptional activator protein phzR [Pantoea vagans C9-1] gi|308056838|gb|ADO09010.1| Transcriptional activator protein phzR [Pantoea vagans C9-1] Length = 240 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 45/245 (18%), Positives = 83/245 (33%), Gaps = 27/245 (11%) Query: 2 SENTLTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS 61 SE + ++ EL L+Q ++ F + P + I Sbjct: 11 SEVKEKFQALTASFELKT---LLQQFTESLGFDYFAFLIQHPVPFTRPRIH-------LH 60 Query: 62 GDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 P + ++ Y D L + W EE ++ E GL Sbjct: 61 STYPKLWVKRYEKQNYYAVDPVLTLCQRPGRGMAWS---EEQFTDAGNLWHEAREYGLQ- 116 Query: 115 FAGIAFPVRLGFHKNGYVIFTSE---FLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 +G + G + +S+ + L + + ++ D LE F + Sbjct: 117 -SGFSCSAMAPNRVIGILSISSQQPISVQLRHAELEVKLHLLAELSLDTLERFSDDAMMV 175 Query: 172 --RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + ++RE L+ +G T+ EI+ L +S HTVN + + + + N+ Q A Sbjct: 176 LKKAFSQRELEILKWTAEGKTAVEISLILSISEHTVNFHQKNMQKRFNVSNKTQIACYAA 235 Query: 230 RFGYI 234 G I Sbjct: 236 AIGLI 240 >gi|1429258|emb|CAA67717.1| unnamed protein product [Bacillus subtilis subsp. subtilis str. 168] Length = 218 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA--ARNLTE 176 GY++ + L + + A G ++I++ ++ + A T+ Sbjct: 100 AGAVGYLLKDTLPEELIDAIRAAARGEAIFRTVTAAKIISETFRAKQQTHAEELAEPFTK 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQ G +E+IAEKL +S TV ++ K +A +R QA+ AIR G + Sbjct: 160 RELEVLQQMAYGLRNEDIAEKLFVSESTVKTHVHRILQKCNAQDRTQAVVFAIRNGIV 217 >gi|295836933|ref|ZP_06823866.1| nitrate/nitrite response regulator [Streptomyces sp. SPB74] gi|295826282|gb|EDY45818.2| nitrate/nitrite response regulator [Streptomyces sp. SPB74] Length = 264 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNL 174 GY++ +A + A G + + L FK +R A L Sbjct: 142 AGATGYLLKEISTDEVATAIRAVADGQSQISPSMASKLLSEFKSMIQRTDERRLVPAPRL 201 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 202 TDREMDVLKLVATGMNNRDIAKELFISENTVKNHVRNILEKLQLHSRMEAVVYAMREKIL 261 >gi|117919601|ref|YP_868793.1| two component LuxR family transcriptional regulator [Shewanella sp. ANA-3] gi|117611933|gb|ABK47387.1| two component transcriptional regulator, LuxR family [Shewanella sp. ANA-3] Length = 225 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTER 177 L NG+++ L + A G + + LE ++ S+ A++ L+ER Sbjct: 110 LQAGANGFLLKDVSLDKLLEAIETVAQGG-HLIEPSVLEQMQQSSATAQSGPTHDLLSER 168 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G++++EIA + L+ TV ++ + KLD +R QA+ K ++ I Sbjct: 169 EREILGFMAGGFSNKEIANAVFLAEGTVKNHVSTILAKLDCRDRTQAVLKGLQLSLI 225 >gi|297155663|gb|ADI05375.1| response regulator receiver protein [Streptomyces bingchenggensis BCW-1] Length = 221 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY----------QVITDFLELFKKRSSAARN 173 L +G+++ L + V + A G T + R+ Sbjct: 94 LRAGASGFLLKDVRRDDLVHAVRMVAAGDSLLAPSVTRTLIAAFTSGAVVPPPRTERLDV 153 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G G ++ EIA L +S HTV ++ + KL +R+QA+ A G Sbjct: 154 LTARERETLRLLGCGLSNAEIAAALVVSEHTVKTHVSNILTKLGLRDRVQAVIAAYETGM 213 Query: 234 I 234 + Sbjct: 214 V 214 >gi|239931777|ref|ZP_04688730.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] Length = 182 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 15/122 (12%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRS--------SAA 171 GY++ ++ L V A G V+ ++ L + + S A Sbjct: 58 GATGYLLKSASTEELQEAVRRTAAGDPVFTPGLAGLVLGEYRRLASEPAGPAQGDDGSKA 117 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI Sbjct: 118 PRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIER 177 Query: 232 GY 233 G Sbjct: 178 GL 179 >gi|66045180|ref|YP_235021.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae B728a] gi|63255887|gb|AAY36983.1| regulatory protein, LuxR:Response regulator receiver [Pseudomonas syringae pv. syringae B728a] Length = 222 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 + GY++ + + + + A G +++ E ++ LT Sbjct: 97 MSAGAVGYLLKDASRDEVIDGLQRVARGEEALNSAVSARLLRRMTERNTSGAALPETLTP 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L L G+++ EI EKLG++ T A++ KL A +R QA + + G + Sbjct: 157 RERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLVS 215 >gi|291300805|ref|YP_003512083.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570025|gb|ADD42990.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 219 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 9/113 (7%) Query: 131 YVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL--ELFKKRSSAARNLTERETSC 181 +++ ++ LA++V V+ +L E + ++ LT RE Sbjct: 100 FLLKDTDPEHLAHQVRALMSDGAVLSAKVTRSVVDGYLQGENRGQHTTRVSRLTRREREV 159 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G ++ +IA ++ LSV TV ++ + KL NR+QA A R G + Sbjct: 160 LVLIAEGMSNSDIAARMFLSVGTVKDHVSAILTKLGINNRVQAALLAERAGIL 212 >gi|294812452|ref|ZP_06771095.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441089|ref|ZP_08215823.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325051|gb|EFG06694.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 236 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA----AR 172 L +G+++ + L V + A G ++I DF + Sbjct: 110 LRSGASGFLLKDAPPADLIAAVRVVAAGEALLAPSVTRRLIADFAARHPAPRKGTGHRPK 169 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L+L G ++ EIAE+L ++ TV ++G KL +R QA+ A G Sbjct: 170 ELTPRETEVLELIAQGLSNLEIAERLVVAEQTVKTHIGRILAKLRLRDRAQAVIFAYESG 229 Query: 233 YI 234 + Sbjct: 230 LV 231 >gi|296268760|ref|YP_003651392.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091547|gb|ADG87499.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 234 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 12/121 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS-----AARN 173 GY++ + + + V G ++I++F L ++ + A Sbjct: 111 AGATGYLLKDVQIDEVPDAVRGVYEGQSLINPAMAAKLISEFQTLSRREAERPPQVPAPR 170 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G + EIA+ L +S +TV ++ + KL +R++A+ A+R Sbjct: 171 LTEREMEVLRLVAKGMHNREIAKALFISENTVKNHVRNILDKLQLHSRMEAVVYAVRERL 230 Query: 234 I 234 + Sbjct: 231 L 231 >gi|229074417|ref|ZP_04207449.1| DNA-binding response regulator [Bacillus cereus Rock4-18] gi|229095286|ref|ZP_04226278.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|229101393|ref|ZP_04232137.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228682098|gb|EEL36231.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228688145|gb|EEL42031.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228708701|gb|EEL60842.1| DNA-binding response regulator [Bacillus cereus Rock4-18] Length = 213 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQAGADGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLITYHQQKMKLESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|229114235|ref|ZP_04243656.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228669255|gb|EEL24676.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 213 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQAGADGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLITYHQQKMKLESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|269125551|ref|YP_003298921.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310509|gb|ACY96883.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 215 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L G+++ S +L V G +++ + A LTE Sbjct: 97 LRGGATGFLLKDSRPALLVEAVRAAVRGDALVSPSVTVRLLAHLTRPQRPARRPAEPLTE 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++L G T+EEIA +L +S+ TV +LG+ KL A NR++ A A G + Sbjct: 157 RELQVVRLVARGRTNEEIAGELFVSLSTVKTHLGNVQRKLAARNRVEIAAWAWESGIV 214 >gi|311279344|ref|YP_003941575.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308748539|gb|ADO48291.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 237 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 75/225 (33%), Gaps = 14/225 (6%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELH--NYDLDSGDIPNILIETYGDDFLFH 79 +I+N+++ L ++ A ++ + C NY + Y D + Sbjct: 11 VIIKNQLETTLNTLGDLSWAYVVLSKKDMSCIFGVTNYPDEWVTQYKEKGLQYTDPVVIT 70 Query: 80 FNSGLLPIIWQS-IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEF 138 + L P W + + + G++ G F + + + F Sbjct: 71 ALNRLTPFSWNEKLLVRSDFNFEKLFIQASQFGII--NGYTFVLHDNQNNLVTLSFIIPA 128 Query: 139 LMLAN--EVIIEAHGACYQVITDFLE-------LFKKRSSAARNLTERETSCLQLAGDGY 189 A E++I+ G ++ E L +K + T RE L G Sbjct: 129 AKGAEIMELLIQHKGDISLLLASVHETYLTLTSLSEKDTDKHSQFTPRENEILHWTSLGK 188 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T +E LG+ V TV ++ + K+ N A+ + I Sbjct: 189 TYQETGMILGIKVRTVKFHMSNIVKKMGVANARHAVRLGVELQLI 233 >gi|288555323|ref|YP_003427258.1| two-component response regulator LiaR [Bacillus pseudofirmus OF4] gi|288546483|gb|ADC50366.1| LiaR two-component response regulator [Bacillus pseudofirmus OF4] Length = 214 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 6/121 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFL--ELFKKRSSAARN 173 +PV + Y++ TS +A + A G +V + +K + Sbjct: 94 VYPV-IEAGAFSYLLKTSSAKEIAQAIRQAADGEPVLASKVTNKMMNHMRSQKEKALHEE 152 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G G +++EIAE L + + TV ++ + KL +R Q A R G Sbjct: 153 LTPRELEVLKLIGVGQSNQEIAESLFIGIKTVKTHVSNILQKLALEDRTQIAIYAHRHGL 212 Query: 234 I 234 + Sbjct: 213 V 213 >gi|157145292|ref|YP_001452611.1| DNA-binding transcriptional activator SdiA [Citrobacter koseri ATCC BAA-895] gi|157082497|gb|ABV12175.1| hypothetical protein CKO_01029 [Citrobacter koseri ATCC BAA-895] Length = 240 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 17/233 (7%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 ++ ++ +++ L +++ + Y + P + I P Sbjct: 18 QEMATAEDVYTELQHQTQQLE---YDYYALCVRHPVPFTRPKISV-------HTTYPQAW 67 Query: 69 IETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + Y + F + L P + + S Q G + L Sbjct: 68 VAHYQSENYFSIDPVLKPENFRQGHLAWNDALFSEAQSLWDAARAHGLRRGATQCLMLPN 127 Query: 127 HKNGYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSC 181 G++ + A +E+ + + ++ L + ++RE Sbjct: 128 RALGFLSVSRASARHAPFAHDEIELRLQLLVRESLSALTRLEDEMVMTPEMRFSKREKEI 187 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 188 LKWTAEGKTSSEIAMILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 240 >gi|318060416|ref|ZP_07979139.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318078887|ref|ZP_07986219.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 219 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 4/116 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----KRSSAARNLTERET 179 L +G+++ + +A+ V + A G L + + LT RE Sbjct: 96 LRAGADGFLLKRARPAEIAHAVRVVAAGDSLLFPAAVRRLADHHGGRAPAPFPGLTGREG 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+L G ++ EIA +L + TV ++ + KL A +R QA+ A G++ Sbjct: 156 EVLRLMARGLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFVA 211 >gi|302537766|ref|ZP_07290108.1| two component system DNA binding response regulator [Streptomyces sp. C] gi|302446661|gb|EFL18477.1| two component system DNA binding response regulator [Streptomyces sp. C] Length = 209 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 51/109 (46%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + LA V A G L L + + A LT+RE LQL Sbjct: 98 AGASGYLLKDAPPEELAAAVRTAAAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLV 157 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++++I+++L LS TV ++L KL +R A+A A I Sbjct: 158 ADGLSNQQISKRLFLSQATVKSHLVHVYAKLGVDSRTSAVAAAATRRLI 206 >gi|271966918|ref|YP_003341114.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510093|gb|ACZ88371.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 226 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNL------ 174 L +G+++ + L + + A G V + F +R ++ L Sbjct: 96 LRAGASGFLLKDTPPGELLAAIRVVAAGEGLLAPTVTRRLIAEFARRPEPSQPLAGELGG 155 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L L G ++ EIA L LS+ TV ++G KL A +R Q + A G Sbjct: 156 VTGRERDVLALIARGLSNTEIAGHLRLSLATVKTHVGRLLSKLGARDRAQLVILAYETGL 215 Query: 234 IC 235 + Sbjct: 216 VS 217 >gi|160898821|ref|YP_001564403.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160364405|gb|ABX36018.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 259 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF---------KKRSSAARNL 174 GY++ S F V+ A+G + L+ F ++ A L Sbjct: 140 GATGYLVKNSWFGNYPQAVLQVANGGASVTPSLARRLLQRFDKTQGAEPKRRTPDEADRL 199 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + RE L++ GYTS EI +L +S TVN ++ + KL R QA+ A G Sbjct: 200 STREREVLRMVASGYTSAEIGSRLMISAMTVNTHIKNIYRKLQVRTRAQAVRFASLRGL 258 >gi|329939465|ref|ZP_08288801.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301694|gb|EGG45588.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 223 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELF-----KKRSSAA 171 L +G+++ L + + A +++ F + + R Sbjct: 95 LKAGASGFMLKDVPPGELLAAIRSVHSGDAVVAPSTTRRLLDRFAPMLPDTNQRPRHEGL 154 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 ERLTEREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|297202869|ref|ZP_06920266.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197715208|gb|EDY59242.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 230 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 48/125 (38%), Gaps = 11/125 (8%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC----------YQVITDFLELFKKRSS 169 FP L GY+ + + V G + ++D + Sbjct: 99 FPA-LKAGARGYLTKDAGGDEIVRAVQSVLSGDAGLSPSIQRRLLERLSDPEPPQPAPAE 157 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT RE L L +G T++EIA +L +S TV ++ + K +R QA+ A Sbjct: 158 APDGLTAREVEVLALIAEGLTNQEIARELHVSTATVKTHINNLFAKTGIKDRAQAVRYAY 217 Query: 230 RFGYI 234 G + Sbjct: 218 AKGLV 222 >gi|27468447|ref|NP_765084.1| two-component response regulator-like protein [Staphylococcus epidermidis ATCC 12228] gi|57867331|ref|YP_188953.1| LuxR family transcriptional regulator [Staphylococcus epidermidis RP62A] gi|242243070|ref|ZP_04797515.1| response regulator [Staphylococcus epidermidis W23144] gi|251811190|ref|ZP_04825663.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|282875769|ref|ZP_06284636.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|293366174|ref|ZP_06612860.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|27315994|gb|AAO05128.1|AE016749_74 two-component response regulator-like protein [Staphylococcus epidermidis ATCC 12228] gi|57637989|gb|AAW54777.1| DNA-binding response regulator, LuxR family [Staphylococcus epidermidis RP62A] gi|242233528|gb|EES35840.1| response regulator [Staphylococcus epidermidis W23144] gi|251805318|gb|EES57975.1| response regulator [Staphylococcus epidermidis BCM-HMP0060] gi|281294794|gb|EFA87321.1| response regulator receiver domain protein [Staphylococcus epidermidis SK135] gi|291319696|gb|EFE60056.1| DNA-binding response regulator [Staphylococcus epidermidis M23864:W2(grey)] gi|329724867|gb|EGG61370.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU144] gi|329734273|gb|EGG70588.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU045] gi|329737276|gb|EGG73530.1| response regulator receiver domain protein [Staphylococcus epidermidis VCU028] Length = 207 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 44/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + G + ++ K+ L++RE L+ Sbjct: 98 GADGYEMKDVEPQKLIETIHKVLQGERIIHPQAKSVIKAVSKKPHYTNKLSKREKEVLKE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIA L +S TV ++ KL+ +R QA A+ I Sbjct: 158 MVKGKTNKEIARALFVSEKTVKTHVSHIFSKLEVSDRTQAAIYAMENKLI 207 >gi|297618086|ref|YP_003703245.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145923|gb|ADI02680.1| two component transcriptional regulator, LuxR family [Syntrophothermus lipocalidus DSM 12680] Length = 213 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 9/112 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 + YV+ L + + G QV + + ++R LT+RE Sbjct: 97 AGVSAYVLKDVGPDELTSTIFKVREGNVIIHPRVAGQVAKELVRQNRRRDEM--KLTKRE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+L GY+++E+A L +S TV +L S KL+ +R QA+ A++ Sbjct: 155 RDVLELLVKGYSNKEVAAALFISEKTVKNHLTSIFRKLEVKDRTQAVIYALK 206 >gi|296120645|ref|YP_003628423.1| response regulator receiver [Planctomyces limnophilus DSM 3776] gi|296012985|gb|ADG66224.1| response regulator receiver [Planctomyces limnophilus DSM 3776] Length = 220 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSS------AARNLTE 176 +GY++ TS +A + G Q+ LEL + +L+ Sbjct: 103 AGADGYLLKTSSAEEIARAIEEVLSGGASMTPQIARKVLELMSNTPPKATVPKSPSDLSL 162 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G T +EIA L LS HT++ +L + KL NR A+A AIR G + Sbjct: 163 REQDVLKQVVRGLTKDEIARALKLSPHTIDTHLRNIYQKLHVHNRAGAVAIAIRDGLV 220 >gi|86739478|ref|YP_479878.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86566340|gb|ABD10149.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 237 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 54/120 (45%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS----AARNL 174 GY++ +A ++ + +++++F + K + L Sbjct: 115 AGAMGYLLKEISIDEVAADIRAVYGGQSLISPSMASKLLSEFAAMIKNKDDRPQLPTPRL 174 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 175 TDREMEVLRLVAKGMNNRDIAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKLL 234 >gi|239834457|ref|ZP_04682785.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301] gi|239822520|gb|EEQ94089.1| regulatory protein LuxR [Ochrobactrum intermedium LMG 3301] Length = 260 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 5/122 (4%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-----VITDFLELFKKRSSAAR 172 IA R G +F+ E + A +I L K ++ + Sbjct: 130 IAVSARGQKGAVGCSLFSFEISPDEDREQFVAKLRPRLLSLSGIIHSALCGCKDVATVSS 189 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR A+A A+ G Sbjct: 190 LLTPREVDCLRWAANGKTDGEIAEILNIARWTVVTYLQNAKIKLNCSNRTSAVATALSLG 249 Query: 233 YI 234 I Sbjct: 250 II 251 >gi|291303089|ref|YP_003514367.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572309|gb|ADD45274.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 225 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA-------RN 173 L +G+++ L V + G + +E F R Sbjct: 96 LSAGASGFLLKDVSPEHLVAAVRMVRDGDALLAPSITRRLVERFVGRDGDTTAIHRDLAA 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ E+A +L LS TV ++ KL +R+QA+ A G Sbjct: 156 LTPRELEVLRLLAQGLSNAELAARLHLSEATVKTHVARILAKLQLRDRVQAVIVAYETGL 215 Query: 234 IC 235 + Sbjct: 216 VS 217 >gi|229010064|ref|ZP_04167278.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|229136711|ref|ZP_04265367.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228646748|gb|EEL02927.1| DNA-binding response regulator [Bacillus cereus BDRD-ST196] gi|228751197|gb|EEM01009.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 213 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQAGADGYLLKDSSSEQVIAAIRMLYRGDSVIHPRMTKKLITYHQQKMKLESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|229181658|ref|ZP_04308983.1| Two component transcriptional regulator, LuxR [Bacillus cereus 172560W] gi|228601854|gb|EEK59350.1| Two component transcriptional regulator, LuxR [Bacillus cereus 172560W] Length = 215 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K + Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++E+A L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEVASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|291295457|ref|YP_003506855.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470416|gb|ADD27835.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 209 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARNLTERETSCLQL 184 GY++ L V + A G L + R +A L+ RE L L Sbjct: 96 AGATGYLLKDVPREELFRAVRLCAKGEAVLSPPVAARLLGRMRGTAEETLSVRELEVLAL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++++EIA +L +S TV +L KL +R A+ AI G + Sbjct: 156 VAKGFSNKEIARELKISEATVKTHLLHTFEKLGVDDRTAAVTVAIERGIL 205 >gi|254819243|ref|ZP_05224244.1| response regulator receiver domain-containing protein [Mycobacterium intracellulare ATCC 13950] Length = 211 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLEL--FKKRSSAARNLTE 176 GY++ ++ LA V A G V+ ++ + K A +LTE Sbjct: 91 AGATGYLVKSASKSELAQAVTATAAGRAVFTPGLAGLVLGEYRRIAQSKDDGPARPSLTE 150 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+ G ++++IA KL LS TV ++ + KL NR++ AI G Sbjct: 151 RETEVLRYVAKGLSAKQIAMKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 207 >gi|229011537|ref|ZP_04168723.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] gi|228749692|gb|EEL99531.1| DNA-binding response regulator [Bacillus mycoides DSM 2048] Length = 211 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L ++ G +V L + K++ + LT+R Sbjct: 95 LEAGADGYQLKEVQPDQLVASIVAVYQGNANFHPKVTPALLGRSAVKKEKENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|229017580|ref|ZP_04174475.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229023797|ref|ZP_04180282.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228737482|gb|EEL87992.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228743723|gb|EEL93828.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 211 Score = 101 bits (253), Expect = 6e-20, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 6/113 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTERET 179 +GY + + L ++ G +V L KK+ + LT+RE Sbjct: 97 AGADGYQLKEVQPDQLVASIVAVYQGNANFHPKVTPALLGRSAAKKKKENPFSMLTKREQ 156 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 157 EVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|320109005|ref|YP_004184595.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319927526|gb|ADV84601.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 203 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 39/108 (36%), Positives = 50/108 (46%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ LA+ V H + D + S LTERE L AG Sbjct: 99 GVLGYLLKDRPAAELADAVRRV-HRGLRVIDPDLAA--EAWGSEVDPLTERERQILLRAG 155 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ E+A +LGLS TV YL A KL AVNRI A A G++ Sbjct: 156 EGRTTAEVARELGLSEGTVRNYLSEAMSKLGAVNRIDAARMARAKGWL 203 >gi|167035632|ref|YP_001670863.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166862120|gb|ABZ00528.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 235 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 69/190 (36%), Gaps = 21/190 (11%) Query: 59 LDSGDIPNILIETYG-DDFLF-----HF-NSGLLPIIWQSI--QEETVIESSGQLSVRLE 109 + P+ IE Y DDF H +S P++W ++ + + Sbjct: 53 YLYSNYPSEWIERYQRDDFYKQDPAAHMSHSSTTPVLWTDDLYRDAPQFREAA-----CQ 107 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS- 168 GL G + H + + + + G+ + + + Sbjct: 108 HGL--RHGWTQSLHDLQHNESQISVARPAEKIDIVELYDKAGSVQWLCHTLHAVLGEHHL 165 Query: 169 ----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ERE L+ + G T+ ++A L LS TVN ++ S K +A N+ A Sbjct: 166 NALCPPQPRMSERELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNAANKAGA 225 Query: 225 IAKAIRFGYI 234 IA A G+I Sbjct: 226 IAIAALRGWI 235 >gi|238064365|ref|ZP_04609074.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237886176|gb|EEP75004.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 228 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 14/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSAARN--- 173 L +G++ L + A GA +I+ FL ++A + Sbjct: 97 LRAGASGFLGKYVTTDALLEAIRTVATGESLLSPGATKALISQFLATPPPNTAAPQPTTP 156 Query: 174 ----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE ++LA DG +++EIA +L LS TV ++ A KL A +R Q + A Sbjct: 157 GIRDLTNREREAMKLAADGKSNDEIARELNLSALTVRTHIQRAMTKLGARDRAQLVVLAY 216 Query: 230 RFGYIC 235 + G + Sbjct: 217 KNGLVS 222 >gi|309791230|ref|ZP_07685762.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] gi|308226792|gb|EFO80488.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] Length = 218 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF---KKRSSAARNLTERET 179 Y++ LA+ + +V ++ F + + LT RE Sbjct: 98 AGAISYLLKDISPEELAHAIRAAQRNEAVLHPEVAAKLMQEFSAPRSSETTVDQLTPREM 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G +++EIA+ L +S T +L + KL +R Q A+R + Sbjct: 158 DVLRLVAKGMSNKEIADTLVISEKTTKTHLSNILSKLHLADRTQVAIYALRKRLV 212 >gi|228955660|ref|ZP_04117658.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229072878|ref|ZP_04206076.1| Two component transcriptional regulator, LuxR [Bacillus cereus F65185] gi|229082623|ref|ZP_04215086.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock4-2] gi|229153573|ref|ZP_04281751.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1550] gi|228630177|gb|EEK86828.1| Two component transcriptional regulator, LuxR [Bacillus cereus m1550] gi|228701055|gb|EEL53578.1| Two component transcriptional regulator, LuxR [Bacillus cereus Rock4-2] gi|228710221|gb|EEL62197.1| Two component transcriptional regulator, LuxR [Bacillus cereus F65185] gi|228804029|gb|EEM50650.1| Two component transcriptional regulator, LuxR [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 215 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +GY++ E L + G +++ L + +K + Sbjct: 95 LRAGASGYILKDVEPDQLVEAIRSAYKGNIQLHPDIANALLSQTLPVEEKEEEPSIQVDV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G +++E+A L ++ TV A++ S KL+ +R QA A++ G Sbjct: 155 LTARENEVLQLLAKGMSNKEVASVLVITEKTVKAHVSSILSKLNLSDRTQAALYAVKNGI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|328885463|emb|CCA58702.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 222 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNL-- 174 L +G+++ +E + L + V + A G ++I +F ++R + L Sbjct: 96 LRAGASGFLVKDTEPMELLHAVRVVARGDALIAPAVTRRLIAEFAGRAERRPDPSPRLNA 155 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE L L G G +++EIA +L LS T ++ KL +R Q + A G Sbjct: 156 LTEREREVLGLVGAGLSNDEIAGRLVLSPATAKTHVSRIMTKLAVRDRAQLVILAYESGM 215 Query: 234 IC 235 I Sbjct: 216 IT 217 >gi|295703554|ref|YP_003596629.1| two-component response regulator LiaR [Bacillus megaterium DSM 319] gi|294801213|gb|ADF38279.1| two-component response regulator LiaR [Bacillus megaterium DSM 319] Length = 208 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 3/113 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L Y++ TS+ +A + G +V + +K S LT RE Sbjct: 94 LEAGATSYLLKTSKAGEIAAAIRRTYEGQSVLEPEVTGKMMSKMRKPSLPHEELTAREME 153 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G T++EIA++L +++ TV ++ + KLD +R QA+ A + Sbjct: 154 ILLLMTQGKTNQEIADELFIALKTVKTHVSNLLSKLDVQDRTQAVIYAFKHKL 206 >gi|257054106|ref|YP_003131938.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256583978|gb|ACU95111.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 221 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRS-----SAA 171 LG GY+ + + + G +++T E + S +A Sbjct: 98 LGAGAQGYLTKDAGRAEIHAALRAAVTGQATFTTAVSRRLVTALTEQRPRPSEPTPDPSA 157 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L G G ++ EIA +L ++ TV ++ +A K+ NR A+ A + Sbjct: 158 TTLTAREREILGLIGAGLSNAEIAARLFIAESTVKTHINNAFAKIGVRNRAGAVRYAYQT 217 Query: 232 GYI 234 G + Sbjct: 218 GLV 220 >gi|226307737|ref|YP_002767697.1| LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226186854|dbj|BAH34958.1| putative LuxR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 239 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 84/225 (37%), Gaps = 9/225 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIET 71 S L L ++AR A P + L + D+ + +L + Sbjct: 20 SPAAGAYGILGLCAEELRARGLAYSAAAVTYRDPSSGRHR-ALASSGYDARVLEFLLDDF 78 Query: 72 YGDDFLFHFNS--GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D LF +P+ WQ + +E + + F R Sbjct: 79 VADRNLFGIIREASGVPVFWQDVPRFEQVEMVTDVLRPSGYAEGASVALGFSGREVTGLL 138 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 S + EV+ + AC +V+ D + L + +L+ RE LQL G Sbjct: 139 HMSFADSGVVDRVREVVAASSAACSRVVGDQVALDRV------HLSPREIQVLQLVARGA 192 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + EIAE+L +S TV +L + VK +R+QA +A ++G I Sbjct: 193 GNVEIAEELFVSRRTVATHLENIFVKTGTNSRVQAAVRAAKWGLI 237 >gi|254389093|ref|ZP_05004323.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702810|gb|EDY48622.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 207 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA----AR 172 L +G+++ + L V + A G ++I DF + Sbjct: 81 LRSGASGFLLKDAPPADLIAAVRVVAAGEALLAPSVTRRLIADFAARHPAPRKGTGHRPK 140 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RET L+L G ++ EIAE+L ++ TV ++G KL +R QA+ A G Sbjct: 141 ELTPRETEVLELIAQGLSNLEIAERLVVAEQTVKTHIGRILAKLRLRDRAQAVIFAYESG 200 Query: 233 YI 234 + Sbjct: 201 LV 202 >gi|126650999|ref|ZP_01723210.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905] gi|126592200|gb|EAZ86249.1| hypothetical protein BB14905_20130 [Bacillus sp. B14905] Length = 377 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 3/121 (2%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLA-NEVIIEAHGACYQVITDFLELF--KKRSSAARNL 174 I P+ G++ F +V + + + FL K + +L Sbjct: 257 IFIPIIQQDQLFGWLTFDQLGEEFDCTKVELLLLEEVGKRLGLFLSRKGEKVEKNTELHL 316 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE+ L L +GY +++I L LS HTV Y+ S KL A NR Q +A A R G + Sbjct: 317 TERESMILGLLAEGYDNKKIGGLLFLSEHTVRDYVSSLMTKLKAKNRTQVVASAFRLGLL 376 Query: 235 C 235 Sbjct: 377 S 377 >gi|271966129|ref|YP_003340325.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509304|gb|ACZ87582.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 209 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 5/114 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFKKRSSAARNLTERETS 180 L GY++ + L V A G ++ + L+ F ++ A+ + RE Sbjct: 98 LAAGVAGYLLKDAPREELQAAVRTAAAGGRILAQRITSQLLDGFGRKRRASP--SPRELE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++E+A L +S TV +L KL NR A+ A+ I Sbjct: 156 VLRLIARGAANKEVARALLISETTVKTHLKHVFAKLGVDNRAAAVVVAMEQRLI 209 >gi|34497990|ref|NP_902205.1| nitrate/nitrite response regulator protein narL [Chromobacterium violaceum ATCC 12472] gi|34103845|gb|AAQ60206.1| nitrate/nitrite response regulator protein narL [Chromobacterium violaceum ATCC 12472] Length = 215 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 6/113 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKK---RSSAARNLTERETS 180 GY++ L + + G ++ L ++ ++S A LT RE Sbjct: 100 GARGYLLKNINADFLLDSIRRAVDGDSVLSPEMTAKLLARLRQPAAKASEADALTPRERE 159 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G +++EIA L L+ TV ++ + KL +R+QA A+ G Sbjct: 160 TLGWLARGASNKEIARALDLAESTVKVHVQNILRKLSLSSRVQAAVYAVEHGL 212 >gi|319652028|ref|ZP_08006149.1| LuxR family Two component transcriptional regulator [Bacillus sp. 2_A_57_CT2] gi|317396319|gb|EFV77036.1| LuxR family Two component transcriptional regulator [Bacillus sp. 2_A_57_CT2] Length = 217 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNL-TER 177 +G ++ ++ L + A G Y +++ +++ K+ ++ NL ++R Sbjct: 97 AGASGCILKSAPHDELLAAIRSVASGNAYLHPSATKRLMEEYIGSVKQGNTDTFNLLSDR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L L G+++++IAE+L +SV TV + G+ KL R + +A A++ G + Sbjct: 157 EKEVLTLIAKGFSNKDIAEQLVISVKTVETHKGNLMEKLQMKTRPELVAYALKKGLL 213 >gi|302869712|ref|YP_003838349.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315503806|ref|YP_004082693.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302572571|gb|ADL48773.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315410425|gb|ADU08542.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 215 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 10/118 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA---ARNLT 175 GY+I ++ + V A G V+ ++ L + + A LT Sbjct: 96 AGATGYLIKSAAPAEFLDAVRRTAAGEPVFTPGLAGLVLGEYRRLAAEPPAPHDDAPRLT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ERET L+L G + ++IA++L LS TV ++ + KL NR++ AI G Sbjct: 156 ERETEVLRLVAKGLSYKQIADRLSLSHRTVQNHVQNTLGKLQLHNRVELTRYAIERGL 213 >gi|324326299|gb|ADY21559.1| response regulator [Bacillus thuringiensis serovar finitimus YBT-020] Length = 216 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V L + K++ + LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAVHEGNTNFHPKVTPALLGRSVVKKEKENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EQEVLREIAKGRSNKEIAAVLHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 209 >gi|268316568|ref|YP_003290287.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] gi|262334102|gb|ACY47899.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] Length = 211 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 6/108 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFK---KRSSAARNLTERET 179 +GY++ L + + I G + V LELF+ ++A + LT RE Sbjct: 96 AGASGYLLKRDLPEHLISAIRIVHQGGSWMSAGVARRALELFRHQLAPAAALQQLTPREQ 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L L G ++ EIAE+L LS+ TV ++ KL A NR +A+++ Sbjct: 156 EVLHLLARGLSNAEIAERLYLSIETVRTHIRHIYRKLQARNRAEAVSR 203 >gi|182439488|ref|YP_001827207.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780152|ref|ZP_08239417.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178468004|dbj|BAG22524.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326660485|gb|EGE45331.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 214 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 5/114 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-----RNLTERE 178 L +GYV + LA + G L + + LTERE Sbjct: 98 LRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQDDAGTGTGRGSTLTERE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA LS TV ++ + +KLD +R QA A+R G Sbjct: 158 REVLGLIADGRSNREIARAFVLSEKTVKTHVSNILMKLDVADRTQAALWAVRNG 211 >gi|329297529|ref|ZP_08254865.1| LuxR family two component transcriptional regulator [Plautia stali symbiont] Length = 198 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 2/105 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC--YQVITDFLELFKKRSSAARNLTERETSC 181 + +GY + SE +L +V+ A G +V+ ++L + ++ R LTERE Sbjct: 86 MDAGADGYQLKDSEPELLLAQVMRGAQGENVFREVVAEYLATRQPSANPFRQLTERELDV 145 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LQ G +++EIA L +S TV ++ + KLD +R+ A Sbjct: 146 LQEVARGLSNKEIAATLHISEETVKVHIRNLLRKLDVRSRVAATV 190 >gi|298249257|ref|ZP_06973061.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547261|gb|EFH81128.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 50/132 (37%), Gaps = 20/132 (15%) Query: 122 VRLG--FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRS---- 168 + G GYV+ LA + A G +VI + + + Sbjct: 98 IHAGLQAGALGYVLKDITAEQLATSIRAAAQGQVLLHPDIASKVIASLSSVPTETAVTPA 157 Query: 169 -------SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 S LTERE L L G ++ EI+E L ++ TV +L + KL +R Sbjct: 158 TPPSIGGSDLAQLTEREREILALLAHGASNREISEALYITGGTVKNHLSNILGKLGVRDR 217 Query: 222 IQAIAKAIRFGY 233 QA KA G+ Sbjct: 218 TQAALKARELGW 229 >gi|328885551|emb|CCA58790.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 249 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 18/132 (13%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR 172 FP L GY+ + + + G +++ +E ++ S Sbjct: 111 FPA-LRAGARGYLTKDAGGEEIVRALRDVTDGRAGLSPAVQRRLLDQLVEGAGRQESPVA 169 Query: 173 N----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LTERET L L DG +++EIA +L +S TV ++ + K +R Sbjct: 170 AEGAAASSGDGLTERETEVLVLVADGLSNQEIAGRLRISTATVKTHINNLFAKTGVRDRA 229 Query: 223 QAIAKAIRFGYI 234 QA+ A + G + Sbjct: 230 QAVRYAYQHGLV 241 >gi|300788348|ref|YP_003768639.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797862|gb|ADJ48237.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 223 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 52/133 (39%), Gaps = 17/133 (12%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSS----- 169 AFP L +G+++ L + + A G V L+ R Sbjct: 89 YAFP-GLKAGASGFLLKNVPPEDLISAIRAVAGGDAVVAPSVTRRLLDAMADRIPDTTPT 147 Query: 170 --------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LTERE L G ++ EIAE+L LS TV ++G KL+ +R Sbjct: 148 GNTPTTGHGLERLTERELEVLTKLARGLSNAEIAEELVLSEGTVKTHVGRILNKLELRDR 207 Query: 222 IQAIAKAIRFGYI 234 +QA+ A G + Sbjct: 208 VQAVVLAYDIGLV 220 >gi|301053804|ref|YP_003792015.1| response regulator [Bacillus anthracis CI] gi|300375973|gb|ADK04877.1| response regulator [Bacillus cereus biovar anthracis str. CI] Length = 209 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 4/113 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFK-KRSSAARNLTERET 179 L +GY + + L +I G +V L K+ + LT+RE Sbjct: 95 LEAGADGYQLKEVQPEQLVVSIIAIYEGNANFHPKVTPALLGRSAVKKENPFSMLTKREQ 154 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EVLQEIAKGRSNKEIAAELHITEQTVKTHVSNILAKLEVDDRTQAALYAVKHG 207 >gi|284050884|ref|ZP_06381094.1| two-component LuxR family transcriptional regulator [Arthrospira platensis str. Paraca] Length = 215 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 9/111 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------LTER 177 GY++ + LA + G F ++ +S +R+ LT R Sbjct: 97 GAKGYLLKDTPSDELAQAIRAVYQGYTQLGPGLFEKVMAAKSKPSRDEPLPGYLQDLTPR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 E L+L G GY++ EIA++L +S TV ++ S +L+ +R Q A Sbjct: 157 ELEVLRLIGKGYSNREIAQELFISERTVKNHVSSILSRLNLRDRTQVALLA 207 >gi|239926785|ref|ZP_04683738.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291435114|ref|ZP_06574504.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291338009|gb|EFE64965.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 224 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLE----LFKKRSSAAR 172 L +G+++ + L V + A G ++I DF + K + + Sbjct: 99 LRAGASGFLLKDAPPADLIAAVRVVASGDALLAPSVTRRLIADFARQRPAVRGKPALRLK 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA+ L L+ TV ++ KLD +R QA+ A Sbjct: 159 ALTERETEVLTLVARGQSNGEIAQTLVLAEQTVKTHVSRILTKLDLRDRAQAVVFAYESQ 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|284032205|ref|YP_003382136.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811498|gb|ADB33337.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 221 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKR--SSAARNL 174 L +G+++ +E + L V + A G +++ +F ++ S L Sbjct: 96 LRVGASGFLVKDTEPVELLQAVRVVARGDALLSPGVTRRLVAEFATRSRQPHASKELDVL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE + L G+G +++EIA +L LS T ++ A VKL +R Q + A + G + Sbjct: 156 TEREREIVALVGEGLSNDEIAARLVLSPATAKTHVSRAMVKLGVRDRAQLVVVAYQTGLV 215 >gi|290957607|ref|YP_003488789.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260647133|emb|CBG70232.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 204 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + +++ + LA+ V G + + D + A LT+RE L+ A Sbjct: 99 AGADAFLVKDAPAAQLADAVRRVLAG---ERVIDPTLAAAALAGGANPLTDREREVLRAA 155 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ E+AE L LS TV YL +A KL NR +A+ A G++ Sbjct: 156 ADGSTNAELAEALHLSPGTVRNYLSTAIQKLAVRNRTEAVRTAREKGWL 204 >gi|229029980|ref|ZP_04186046.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|228731328|gb|EEL82244.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 215 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V L + K++ + LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAVHEGNTNFHPKVTPALLGRSAIKKEKENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|190894996|ref|YP_001985289.1| transcriptional activator protein [Rhizobium etli CIAT 652] gi|190700657|gb|ACE94739.1| transcriptional activator protein [Rhizobium etli CIAT 652] gi|327193288|gb|EGE60194.1| transcriptional activator protein [Rhizobium etli CNPAF512] Length = 241 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 15/190 (7%) Query: 58 DLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 L P ++ Y D + G LP+ W + ++ + Sbjct: 54 PLLMLTYPPEWVKQYRDRDYFSIDPVVRLGRRGFLPVEWSASGWDS--GRAYGFFKEAMA 111 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSE-----FLMLANEVIIEAHGACYQVITDFLELFK 165 + G+ PVR + TS + + + + + + + L Sbjct: 112 FGVGRQGVTLPVRGPQGERSLFTVTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRAMVLSG 171 Query: 166 KRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R A L+ RE CL++ +G +++I +L +SV V YL SA KL +A Sbjct: 172 MRKVADLPRLSRRELQCLEMTANGLLAKQICARLSISVSAVQLYLASARRKLTVATTSEA 231 Query: 225 IAKAIRFGYI 234 +A+A I Sbjct: 232 VARATALELI 241 >gi|156742230|ref|YP_001432359.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156233558|gb|ABU58341.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 254 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC--------------------YQVITDFLEL 163 L + Y LA+ + A G + D L Sbjct: 103 LRAGASAYRSKDVHPDELADVLRRVARGEYVINDVVLDDPKVAGRVLSQFRNLPQDVTSL 162 Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + L++RE L+ G ++ EIAE L +S TV ++ S KL +R Q Sbjct: 163 QEMEFPLFTPLSDREIEVLERIAAGGSNREIAEALHISTQTVKNHISSILRKLSLNDRTQ 222 Query: 224 AIAKAIRFGYI 234 A+ A+R G+I Sbjct: 223 AVLYALRRGWI 233 >gi|117928967|ref|YP_873518.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117649430|gb|ABK53532.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 303 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 13/121 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA--------CYQVITDFLELFKKRSS----AARN 173 GY++ +A + HG +++ +F L K+ + A Sbjct: 181 AGAMGYLLKEISIDEVAAAIRAV-HGGQSLISPSMASKLLNEFASLIKRGDARHQVPAPK 239 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R Sbjct: 240 LTEREMEVLRLVAKGLNNRDIAKQLFISENTVKNHVRNILEKLQLHSRMEAVVYAVREKL 299 Query: 234 I 234 + Sbjct: 300 L 300 >gi|332523779|ref|ZP_08400031.1| response regulator receiver domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332315043|gb|EGJ28028.1| response regulator receiver domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 198 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L H +GYV+ L + G EL ++ + + L+ RE + Sbjct: 92 LAAHVDGYVLKDRSISELMQTIHSVLEGRKEY----SPELIEEVTFSTNPLSPREQEVMS 147 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA+KL LS TV YL KL+A NR +A G+I Sbjct: 148 LVVQGASNHEIAQKLFLSNGTVRNYLTCVFTKLNANNRTEAAKIVQEKGWI 198 >gi|312961179|ref|ZP_07775684.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311284837|gb|EFQ63413.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 217 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 7/117 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTERE 178 GY++ + + + A G +++ E ++ A +LT RE Sbjct: 99 AGAVGYLLKDASRDEVIQALQQVAAGGEALNTAVSARLLRRMTERQASGAAPAEHLTPRE 158 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L +G ++ I E+LG++ T A++ KL A +R QA + I G + Sbjct: 159 RQVLGLVANGMSNRAIGEQLGITTGTAKAHVERVIGKLGAADRTQAAVRGIALGLVV 215 >gi|294813229|ref|ZP_06771872.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441661|ref|ZP_08216395.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294325828|gb|EFG07471.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELF-----KKRSSAA 171 L +G+++ L + + A +++ F + + R+ Sbjct: 95 LKAGASGFMLKDVPPGELLAAIRSVHSGDAVVAPSTTRRLLDRFSPMLPSGGPEPRNKEV 154 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + L G ++ EIA +L LS TV ++G KL+ +R+Q + A Sbjct: 155 DRLTEREREVMMLVAQGLSNGEIAGRLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|284050135|ref|ZP_06380345.1| two component transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] gi|291569796|dbj|BAI92068.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 236 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 39/62 (62%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIAEKL ++V TV ++ S KL A +R QA +A+R G Sbjct: 174 PLTERELEVLELIVGGRSNAEIAEKLYITVGTVKTHVRSILNKLCADDRTQAAVRALRSG 233 Query: 233 YI 234 +I Sbjct: 234 WI 235 >gi|229115740|ref|ZP_04245143.1| DNA-binding response regulator [Bacillus cereus Rock1-3] gi|228667725|gb|EEL23164.1| DNA-binding response regulator [Bacillus cereus Rock1-3] Length = 211 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V + + K+ + LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPALMGRSAVKKEIENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A+++G Sbjct: 155 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYG 209 >gi|284032185|ref|YP_003382116.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283811478|gb|ADB33317.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 222 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA------RNL 174 L +G+++ + L + + A G V + F + + L Sbjct: 95 LRSGASGFLLKDARPEDLLTAIRVIAAGDGMLAPTVTRRLIHAFAQAAPTPGTSQTLDRL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G ++ EI ++LG++ TV ++ + KLDA +R+QA A G + Sbjct: 155 TPREREVLALLAAGRSNAEIGDELGVATGTVKTHVNALLSKLDARDRVQATIIAYDTGLV 214 >gi|223937111|ref|ZP_03629018.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894133|gb|EEF60587.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 209 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 6/108 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTERET 179 NGY+I + L + A G + + + + A+ L RE Sbjct: 97 AGANGYLIKSGPPERLIEGIRDIASGGSPMSGHIARKVVGYFRTLGPATGKAKPLAPREE 156 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L L GY +EI KLGLSV TV Y+ +A K+ +RI+A+AK Sbjct: 157 QVLTLLASGYLYKEIGAKLGLSVETVRTYVKNACTKMHVRSRIEAVAK 204 >gi|29832148|ref|NP_826782.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609266|dbj|BAC73317.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 227 Score = 101 bits (252), Expect = 7e-20, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L +G+++ ++ L + + A G ++I L +AA Sbjct: 100 LRAGASGFLVKDTKPAELLDAIRTVAAGEALLSPGPTARLIARLLRTPVPPPAAAVGPEC 159 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L L G + EIAE LGLS T ++ KL A +R Q + A G Sbjct: 160 LSGREREVLTLVARGLNNTEIAESLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGL 219 Query: 234 IC 235 + Sbjct: 220 VT 221 >gi|284043982|ref|YP_003394322.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948203|gb|ADB50947.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 215 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 8/113 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK--RSSAAR---NLTER 177 GY++ + + V A G +V L + R +AAR L+ R Sbjct: 99 AGGCGYLLKDAPIETIVAGVTAVAAGDAVLSPRVAATMLARMRASGRQTAARARAQLSPR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E L+L G + IA++L +S HTV ++ S KL NRIQA +A+R Sbjct: 159 EQEVLRLVAGGMDNAAIAQELFISPHTVKNHISSILTKLHVANRIQAAVRAVR 211 >gi|297191947|ref|ZP_06909345.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197723328|gb|EDY67236.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 218 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSC 181 GY++ + L V A G V + + + + + L+ RE Sbjct: 105 AGATGYLLKDAPREELFTAVRAAAQGRTVLSPAVASRLVSHVRAPAAPGSEGLSAREREV 164 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ IA +L +S TV +L KL A +R A+A A G + Sbjct: 165 LELVAKGTSNRAIARELFISEATVKTHLTHVFGKLGAKDRAAAVALAYERGIL 217 >gi|119717865|ref|YP_924830.1| two component LuxR family transcriptional regulator [Nocardioides sp. JS614] gi|119538526|gb|ABL83143.1| two component transcriptional regulator, LuxR family [Nocardioides sp. JS614] Length = 215 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA--------CYQVITDFLELFKKRSSAA-RNL 174 + G+++ + V AHGA +++ + ++ + A L Sbjct: 94 MRAGAAGFLLKDMAGEDIVAAVRQVAHGADALLAPAVTRRLVDRYTRERRRPPAPALDQL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+L G ++ EIA +L + TV ++ +KL +R+QA+ A G Sbjct: 154 TPREHDVLRLIAAGLSNAEIAAELFIGETTVKTHVARVLMKLRLRDRVQAVVLAYESGL 212 >gi|289669083|ref|ZP_06490158.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 213 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ ++ L + + G QV E L+ RET L Sbjct: 100 LQAGACGYLLKSALRRELVDTIRGVRRGQRRQVPAAVAENIAAH-VLDDALSARETEVLN 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G ++++I L +S TV A++ + KL +R A+ A+R G + Sbjct: 159 LVATGCSNKQIGSALSISEETVKAHMKNILAKLGVRDRTHAVIVALRRGILS 210 >gi|300781389|ref|ZP_07091243.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533096|gb|EFK54157.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 228 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 14/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLE-------LFKKRSS 169 L +G+++ +E L + + A G +++ E L Sbjct: 96 LAAGASGFLLKDAEPETLLDAIRTVASGDAVISPRATNRIVAKLSEAPAETIPLSTADRR 155 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A + LTERE L G G+T+ EIAE+L +S+ TV ++G +K + +R+ A A Sbjct: 156 AIQELTEREHEILIAVGRGWTNTEIAERLFISMPTVKTHVGRVLMKTHSRDRVHAALFAY 215 Query: 230 RFGYIC 235 R G + Sbjct: 216 RTGLVS 221 >gi|219848672|ref|YP_002463105.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542931|gb|ACL24669.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 219 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 14/121 (11%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN---- 173 GY++ + +LA+ + A G Q++ +L +S Sbjct: 96 AAGARGYLLKDVDHRVLADSIRTVAGGGALIHPQITAQLLPRLSQLATPTTSLPTPSAEP 155 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+L GYT++EI E L LS+ TV +L KL +R QA A Sbjct: 156 SIALTPRERDILRLLAQGYTNQEIGEALALSIGTVKNHLSVIFAKLAVRDRTQAALWARE 215 Query: 231 F 231 Sbjct: 216 H 216 >gi|90739296|gb|ABD97851.1| AvsR [Agrobacterium vitis] Length = 246 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 8/166 (4%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + L + + P+ + V E L +L LP +++P+ + + Sbjct: 77 NVLSQLSRAMEPVDMHDLAH--VSEEGLLLRSKLRDLPLPRQAVSYPLLSIDGRGAILAI 134 Query: 135 TSEFLMLANEVIIEAHGACYQVIT-DFLELFKKRSSAA-----RNLTERETSCLQLAGDG 188 S H ++ F KR A LT RE L+ G Sbjct: 135 ASNACEQEWRRFRRCHDRDIHLLAGKFHAGLVKRCDGADIAGTPPLTRREQETLRWTAAG 194 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E A LG+S TV ++ +A +KLDAV+ QA+ KA++ G I Sbjct: 195 KSYWETAVILGISERTVRYFMANARIKLDAVSNTQAVVKALQRGLI 240 >gi|296331918|ref|ZP_06874383.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673530|ref|YP_003865202.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150996|gb|EFG91880.1| two-component response regulator (YfiJ) [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411774|gb|ADM36893.1| two-component response regulator (paired with YfiJ) [Bacillus subtilis subsp. spizizenii str. W23] Length = 220 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 14/123 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELF-------KKRSS 169 L +GY++ + V+ G Q++ D K++ Sbjct: 94 LEEGASGYLLKDMSADTIVKAVMTVQSGGMVLPPELTAQMLNDLKREKQLKGIHEKEKPK 153 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LTERE L G G ++EIAEKL ++ TV ++ + KL +R QA ++ Sbjct: 154 ELLDLTEREMEVLAELGYGLNNKEIAEKLFITEGTVKNHVSNIISKLSVRDRTQAAIYSV 213 Query: 230 RFG 232 R+G Sbjct: 214 RYG 216 >gi|222110965|ref|YP_002553229.1| two component LuxR family transcriptional regulator [Acidovorax ebreus TPSY] gi|221730409|gb|ACM33229.1| two component transcriptional regulator, LuxR family [Acidovorax ebreus TPSY] Length = 262 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 14/121 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN---------- 173 GY++ S F V+ A+G + L+ F +AA + Sbjct: 141 GATGYLVKNSWFGSYPQAVLQVANGGASITPNLARRLLQRFDPSGAAAPHAQRRVEQETE 200 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L++ GYTS EI +L +S TVN ++ + KL R QA+ A G Sbjct: 201 RLSQREKEVLRMVASGYTSAEIGNRLFISSLTVNTHIKNIYRKLQVRTRAQAVRFASLRG 260 Query: 233 Y 233 Sbjct: 261 L 261 >gi|332096683|gb|EGJ01674.1| regulatory protein sdiA [Shigella boydii 3594-74] Length = 147 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 5/140 (3%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIEAHGACYQ 155 S Q G+ + L G++ F+ E +L++E+ ++ + Sbjct: 8 SEAQPLWEAAHAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLKMQLLVRE 67 Query: 156 VITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + + L + N ++RE L+ +G TS EIA L +S +TVN + + Sbjct: 68 SLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNMQK 127 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 K++A N+ Q A G I Sbjct: 128 KINAPNKTQVACYAAATGLI 147 >gi|302344447|ref|YP_003808976.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301641060|gb|ADK86382.1| transcriptional regulator, LuxR family [Desulfarculus baarsii DSM 2075] Length = 221 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 4/131 (3%) Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIEAHGACYQVITDFLE 162 GG A A+P+ + YV+ + + + G + Sbjct: 90 MAHGGRRCNAVYAYPIFDEAGRVEYVLKIGFDVTDDRVSRRRLERYVEGLERSLRGRPAL 149 Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + L+ RE L+L G T+ EIA L +S HTV ++G+ KL +R Sbjct: 150 AAPPAEAEESGLSGREMEVLRLVASGMTNNEIARALCISPHTVKTHVGNIFNKLGVNDRA 209 Query: 223 QAIAKAIRFGY 233 A A R G Sbjct: 210 MAAVTAARMGL 220 >gi|291438083|ref|ZP_06577473.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340978|gb|EFE67934.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 235 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELF-----KKRSSAA 171 L +G+++ L + G +++ F + + Sbjct: 106 LKAGASGFMLKDVPPGELLAAIRAVHSGDAVVAPSTTRRLLDRFAPMLPGTGKQPAHKEL 165 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 166 ERLTEREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 225 Query: 232 GYI 234 G + Sbjct: 226 GLV 228 >gi|288923880|ref|ZP_06417961.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288344773|gb|EFC79221.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 222 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------L 174 L G+++ + L + + G V +E F R+ L Sbjct: 97 LRAGAAGFLLKDASRERLVEAIRVLHAGDALLSPAVTRRLVETFAARTRPPTPPGLLDLL 156 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G ++ EIA +L ++ TV +++G+ KL +R+QA+ A G + Sbjct: 157 TPREREVLVLVARGLSNTEIAGRLVVTEATVKSHVGAILTKLGLRDRVQAVVLAYENGVV 216 Query: 235 C 235 Sbjct: 217 V 217 >gi|298250569|ref|ZP_06974373.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548573|gb|EFH82440.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRS------SAARNL 174 L GY++ ++ L + + A G +++ L A L Sbjct: 101 LRAGACGYLLKDTDRETLFHAIRAAARGDLLLQPEIMARILARTTDAPHSTPSRPQAEEL 160 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+ G S+EIA +LG+S+ TV ++L S KL +R A+A I G + Sbjct: 161 TERECEVLEAVARGERSKEIASRLGISLRTVGSHLTSIYSKLGVDSRASAVATGIERGLL 220 Query: 235 C 235 Sbjct: 221 S 221 >gi|291302120|ref|YP_003513398.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571340|gb|ADD44305.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA--RNL 174 L +G+++ +E L V A G ++I +F + A L Sbjct: 96 LRAGASGFLVKDTEPEELIRAVRTVAVGEALLAPNVTRRLIAEFAATPRVDGPAPLVSAL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE + L G G ++EEI+ L +S T ++ A KL + +R Q + A G + Sbjct: 156 TPREREVVTLVGQGKSNEEISRLLHISHTTAKTHVSRAMTKLGSRDRAQLVVAAYESGLV 215 Query: 235 C 235 Sbjct: 216 V 216 >gi|227535294|ref|ZP_03965343.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187028|gb|EEI67095.1| response regulator [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 202 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 9/113 (7%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSC 181 NGY++ S L + + G +++T+ + ++ + LT+RE + Sbjct: 95 AAQVNGYLLKDSPSDDLIDVIRKVMTGQTVYAPELVTNMV------TAESNPLTDRELAV 148 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +S++IA L LS TV YL + KL NRI+A+ A + ++ Sbjct: 149 LAAVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQMAKKNKWL 201 >gi|297194274|ref|ZP_06911672.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152196|gb|EDY64473.2| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 256 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L +G+++ + + + V + A G A + ++ + + LTE Sbjct: 136 LRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPAAVRSLAAEYGNSAARTAMERAALTE 195 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE + L+L G ++ EIA +L + TV ++ + KL A +R QA+ A G++ Sbjct: 196 REAAVLRLMARGLSNSEIAAQLFVGTETVKTHVSAVLAKLGARDRTQAVIAAYESGFVA 254 >gi|285017693|ref|YP_003375404.1| two-component system regulatory protein, luxr family [Xanthomonas albilineans GPE PC73] gi|283472911|emb|CBA15416.1| probable two-component system regulatory protein, luxr family [Xanthomonas albilineans] Length = 213 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 19/125 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--------------QVITDFLELFKKRSS 169 L GY++ L + A G Q+ DF+ L + Sbjct: 94 LKAGAKGYLLKDVSLEQLVGAIRTVAAGGSLVQPVVTQRLLSGLEQMRNDFVSLDR---- 149 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 150 -PDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAF 208 Query: 230 RFGYI 234 + Sbjct: 209 ELQLV 213 >gi|220914117|ref|YP_002489426.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219860995|gb|ACL41337.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 222 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + L V+ A G L + S+ LT RE L+L Sbjct: 107 AGASGYMLKDAPPEQLRQAVLQAAAGGTVLAPRAAALLMDRISNPGTALTPREVQLLELL 166 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ IA++L +S TV +L KL NR AIA A + I Sbjct: 167 ATGLSNRAIAKQLFVSEATVKTHLVHIYGKLGVDNRTAAIAAATQRRII 215 >gi|190574796|ref|YP_001972641.1| putative two-component system response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190012718|emb|CAQ46347.1| putative two-component system response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 217 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + Y++ L + + + A G I + L+ RET L+ Sbjct: 100 LQAGASAYLLKDMLRHELVDTIRMVA-GGRRAPIPPAVAASIAAHVVEDRLSPRETEVLR 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G +++ I E++ +S TV A++ S KL +R A+ +A+R G I Sbjct: 159 HVAGGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALRRGIIS 210 >gi|157371727|ref|YP_001479716.1| two component LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157323491|gb|ABV42588.1| two component transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 210 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE L + A G + D+L ++ LTERE L Sbjct: 99 DAGADGYLLKDSEPEQLLEHIRAAAEGKNVISDAVADYLSSRSEQHDPFAELTERELDVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G +++++A +L +S TV ++ + KLD +R+ A Sbjct: 159 QEVARGLSNKQVAAQLHISEETVKVHIRNMLRKLDVRSRVAATV 202 >gi|296268935|ref|YP_003651567.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091722|gb|ADG87674.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 221 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 10/120 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----------LT 175 +G+++ L N + + G + L + ++ + LT Sbjct: 96 AGASGFLLKDVPPNELVNGIRVVHSGDAVVAPSTTRRLLDRFAAHLPDGQAGRPELDALT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L L G +++EIAE+L L+ TV +LG KL +R QAI A G + Sbjct: 156 AREREVLILVAKGLSNQEIAERLHLAEATVKTHLGRVLAKLRLRDRAQAIVYAYETGLVS 215 >gi|302531315|ref|ZP_07283657.1| two-component system response regulator [Streptomyces sp. AA4] gi|302440210|gb|EFL12026.1| two-component system response regulator [Streptomyces sp. AA4] Length = 218 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--LTE 176 +GY++ ++ L + V A G V+ ++ + A LT+ Sbjct: 99 AGASGYLVKSASAAELVDAVRRTADGDPVFTAGLAGLVLGEYRRMADAPDGAPEPPRLTD 158 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+L G T+ +IAE+L LS TV ++ S KL NR++ AI G Sbjct: 159 RETDVLRLVAKGLTARQIAERLVLSHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 215 >gi|239978741|ref|ZP_04701265.1| two-component system response regulator [Streptomyces albus J1074] gi|291450632|ref|ZP_06590022.1| two-component system response regulator [Streptomyces albus J1074] gi|291353581|gb|EFE80483.1| two-component system response regulator [Streptomyces albus J1074] Length = 222 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERE 178 L GYV + LA + G L + +LTERE Sbjct: 106 LRAGAGGYVYKDVDPEALARAIRSVHAGHVLLQPEVAGALLSQDEHGQGQGRGGSLTERE 165 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 166 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGM 220 >gi|239978487|ref|ZP_04701011.1| two component system response regulator [Streptomyces albus J1074] gi|291450385|ref|ZP_06589775.1| two component system response regulator [Streptomyces albus J1074] gi|291353334|gb|EFE80236.1| two component system response regulator [Streptomyces albus J1074] Length = 222 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L G+++ +E LA+ + + A G ++I +F R L Sbjct: 96 LREGVTGFLVKDTEPEELAHAIRVAARGDALISPSVTRRLIAEFAGRVAPPPPDPRLNAL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G T++ IA L +S T ++ KL +R Q + A G + Sbjct: 156 TDREREVLRLVAGGLTNDRIAATLVVSPATAKTHVSRVMTKLGVRDRSQLVVLAYESGLV 215 Query: 235 C 235 Sbjct: 216 S 216 >gi|302540643|ref|ZP_07292985.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458261|gb|EFL21354.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 227 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ L + + A G A +IT FL + A Sbjct: 97 LRAGASGFLGKDVGPEFLLSGIRTVAAGDSLLSPTATRTLITRFLATPDTDTPLAPPERL 156 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + LA G ++ EIA++L +S TV +++ A KLD +R Q + A + Sbjct: 157 AALTEREREVMALAAHGKSNAEIADQLVVSPLTVRSHIQRAMTKLDVRDRAQLVVIAYQS 216 Query: 232 GYI 234 G + Sbjct: 217 GLV 219 >gi|2495418|sp|Q46751|CARR_PECCC RecName: Full=Transcriptional activator protein CarR gi|765139|gb|AAC45995.1| CarR [Pectobacterium carotovorum] Length = 244 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 21/196 (10%) Query: 58 DLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 + P ++ Y D + + + P W + + + Q Sbjct: 34 PYIISNYPEAWMKEYIKKEMFLSDPIIVASLARITPFSWDD-NDIVTLRAKNQDVFISSV 92 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--------ITDFLE 162 +G F + + + + E ++ H Q+ + + Sbjct: 93 QHDISSGYTFVLHDHDNNVATLSIANHLEDANFEKCMKNHENDLQMLLVNVHEKVMAYQR 152 Query: 163 LFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + N L+ RET L L G T +E++ LG+S TV ++ ++ KLD Sbjct: 153 AINDQDNPPDNSRNALLSPRETEVLFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLD 212 Query: 218 AVNRIQAIAKAIRFGY 233 +N AI KA+ Sbjct: 213 VINSRHAITKALELNL 228 >gi|186682719|ref|YP_001865915.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465171|gb|ACC80972.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 211 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ +E L + + G Y T +L ++ SS L++RE L+ Sbjct: 101 LRAGAKGYLLKGAEPNELLDAIRTVHKGQKYIPPTIAAKLAERMSS--EELSDRELEVLR 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++I+ L ++ TV + + KL+ +R QA+ A+ G + Sbjct: 159 LIAKGKNNQQISNVLNIAESTVRFHTNNIFGKLNVSDRTQALVTALNRGIV 209 >gi|196234582|ref|ZP_03133403.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196221370|gb|EDY15919.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 209 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 6/110 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR---NLTER 177 L +GY+I + L + G + ++ F+ + AR L+ R Sbjct: 97 LKAGASGYLIKSGPPEKLFEAIRDVHSGGAPFSAHIARKVVQYFRGTTKPARETEKLSPR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 E ++L GY +EI +KLG+ TV +Y+ + +KL NR +A+AK Sbjct: 157 ECEVIELLASGYIYKEIGDKLGIGAETVRSYVKNICIKLQVKNRTEAVAK 206 >gi|170782478|ref|YP_001710811.1| putative two-component response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157047|emb|CAQ02220.1| putative two-component response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 212 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 18/129 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK-------------- 166 L +G+++ + L + A G +V +EL Sbjct: 80 LRAGASGFLVKDTRPEHLMEAIRAVADGDAAISPRVTRRMIELLGPTMPATGGAAGTGEG 139 Query: 167 -RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R LT RE L +G T++EIA +L LS TV ++G KL+ +R+QA+ Sbjct: 140 AADPRLRPLTARELEVLTALAEGLTNQEIAGRLFLSESTVKTHVGRVLAKLEVRDRVQAV 199 Query: 226 AKAIRFGYI 234 A G + Sbjct: 200 ILAYDCGLV 208 >gi|119963933|ref|YP_949838.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119950792|gb|ABM09703.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 230 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 15/127 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKK------------RS 168 L + +++ L + V + A G +V LE + + R Sbjct: 98 LQAGASAFLLKDVAPSELVHAVRLVASGDAVVAPRVTQRLLETYVRGGVVPGHSPTSHRD 157 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RET L +G ++ EIA K LS TV ++ KL +R+Q + A Sbjct: 158 PLLDELTPRETEILTTIAEGLSNAEIAHKFFLSEATVKTHVRRILSKLQLRDRVQVVVYA 217 Query: 229 IRFGYIC 235 G + Sbjct: 218 YETGLVV 224 >gi|190573276|ref|YP_001971121.1| putative two-component response regulator transcriptional regulator [Stenotrophomonas maltophilia K279a] gi|190011198|emb|CAQ44808.1| putative two-component response regulator transcriptional regulatory protein [Stenotrophomonas maltophilia K279a] Length = 213 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKK--RSSAARNL 174 L GY++ L + A G ++++ + + L Sbjct: 94 LKAGAKGYLLKDVTLAQLVGAIRTVAEGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA + Sbjct: 154 TDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 213 >gi|297156827|gb|ADI06539.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 222 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L G+++ +E L + V + G ++I +F + R L Sbjct: 96 LRAGATGFLVKDTEPEELIHAVRVAHRGDALISPSVTRRLIAEFAGRVQAPEPGPRLRAL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE ++L G T++EIA +L LS T ++ KLD +R Q + A G + Sbjct: 156 TDREREVMRLVAAGLTNDEIAARLVLSPATAKTHVSRIMTKLDVRDRSQLVVLAYESGMV 215 Query: 235 C 235 Sbjct: 216 S 216 >gi|254382632|ref|ZP_04997990.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194341535|gb|EDX22501.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 215 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 13/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR------N 173 GY++ ++ L + V A G V+ ++ L + AA Sbjct: 93 GATGYLLKSAGAQELIDAVRRTAAGDPVFTPGLAGLVLGEYRRLATDPAPAAPDEPKAPQ 152 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 153 LTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIERGL 212 >gi|134098945|ref|YP_001104606.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] gi|133911568|emb|CAM01681.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 227 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 4/112 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCL 182 GYV+ + L + A G + + RSS LTERE L Sbjct: 117 RGARGYVVKDVDTTELVRAIRAVARGESAFDSRSAAAMVHSMNNRSSEPE-LTERELGVL 175 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G ++ +I +L +S T ++ + KLD R +A+ +A + G I Sbjct: 176 RLLAAGSSNRQIGGQLYISETTAKFHVRNIMRKLDVSTRAEAVYEASKRGLI 227 >gi|330940036|gb|EGH43227.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B] Length = 240 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 74/227 (32%), Gaps = 13/227 (5%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + L ++ + + + L N D GD Sbjct: 24 ELDGQTAIENALEWLRRECNSERAMFFQFKGPV------LLTFITSNVDEAWGDAYRQHD 77 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + + + L + WQ + + + L I++ H Sbjct: 78 LITQDPVIRCYRNQLGFLNWQEAFRQYPVSA---FYDELVDACELLPAISYG--YTNHCR 132 Query: 130 GYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G TS + + E ++ + + +R LT RE LQ A D Sbjct: 133 GADSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWARD 192 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 193 GKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|302184842|ref|ZP_07261515.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae 642] gi|330954520|gb|EGH54780.1| LuxR response regulator receiver [Pseudomonas syringae Cit 7] Length = 222 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 7/118 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTER 177 GY++ + + + + A G +++ E ++ LT R Sbjct: 98 SAGAVGYLLKDASRDEVIDGLQRVARGEEALNSAVSARLLRRMTERNTSGAALPETLTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L L G+++ EI EKLG++ T A++ KL A +R QA + + G + Sbjct: 158 ERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLVS 215 >gi|89096863|ref|ZP_01169754.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] gi|89088243|gb|EAR67353.1| DNA-binding response regulator [Bacillus sp. NRRL B-14911] Length = 201 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 4/110 (3%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ + LA V H + + + S LT RET L+ Sbjct: 95 AAGVGGYLLKDTPSRDLAEAVRRV-HAGNRMISPELSLAMWEEKS---PLTPRETEILES 150 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G+T +IA +L LS TV Y+ KL A NRI+A+ +A G+I Sbjct: 151 AAAGHTMAQIASQLYLSHGTVRNYMSEIIGKLGAANRIEAVNQAKAKGWI 200 >gi|291298065|ref|YP_003509343.1| LuxR family transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567285|gb|ADD40250.1| transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 204 Score = 101 bits (252), Expect = 8e-20, Method: Composition-based stats. Identities = 37/103 (35%), Positives = 46/103 (44%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 V F A + AC ++ D + LT RE L + G T Sbjct: 102 VSFMGTCASAAQFLESVRQIACGHLVMDSDVALGLLRANHSPLTAREREVLSITHGGATP 161 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EIA KL LSV TV YL +A KL A NRI+AI A G+I Sbjct: 162 KEIASKLQLSVGTVRNYLANACAKLGARNRIEAIRVAQSAGWI 204 >gi|229172958|ref|ZP_04300510.1| DNA-binding response regulator [Bacillus cereus MM3] gi|228610478|gb|EEK67748.1| DNA-binding response regulator [Bacillus cereus MM3] Length = 215 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V + K++ + LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAVHEGNANFHPKVTPALFGRSAVKKEKENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|224552939|gb|ACN54712.1| PagR [Pantoea agglomerans pv. gypsophilae] gi|224552942|gb|ACN54714.1| PagR [Pantoea agglomerans pv. gypsophilae] Length = 210 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 10/185 (5%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG---QLSVRLEGGL 112 N + + DI + D + + W E VI S G Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRSIEDFFW----ENNVILSGGYNLTRIFNESFQY 83 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKR-SS 169 F G FP+ + + S+ + + + ++ L L+ + Sbjct: 84 NIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSEIVSFLIKLHQKTLNLYSQHHQK 143 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ G G T E+A L ++ TV ++G+ KL N A+ Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGT 203 Query: 230 RFGYI 234 + Sbjct: 204 ELRLL 208 >gi|307154613|ref|YP_003889997.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984841|gb|ADN16722.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 211 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY+ +E L + G Y I + + L+ RE L+ Sbjct: 101 LRSGAKGYIFKGAEPHELLKAIRTVHKGQKY--IPPNIAAKLAERLGSSPLSNRELEVLR 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EI++ L ++ TV +L + KLD +R QA+ A+ G + Sbjct: 159 LIAKGKSNSEISQDLSIAESTVRFHLKNIFSKLDVGDRTQALVTALNRGIV 209 >gi|15613144|ref|NP_241447.1| two-component response regulator [Bacillus halodurans C-125] gi|10173195|dbj|BAB04300.1| two-component response regulator [Bacillus halodurans C-125] Length = 201 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 3/106 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 GY++ L + +G + LF K LTERE L+L G Sbjct: 99 EGYLLKDEPIEFLVEAIHKVMNGERVLSPDLAMHLFLKEE---NPLTEREQEVLRLTKGG 155 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+E+IA L L+ TV Y+ +A KL+ NR QAI KA G+I Sbjct: 156 KTTEQIATVLYLTNGTVRNYISTAIQKLEVENRHQAIQKAEEKGWI 201 >gi|85708570|ref|ZP_01039636.1| two-component transcriptional regulator, LuxR family protein [Erythrobacter sp. NAP1] gi|85690104|gb|EAQ30107.1| two-component transcriptional regulator, LuxR family protein [Erythrobacter sp. NAP1] Length = 236 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 9/151 (5%) Query: 89 WQSIQ--EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 WQ + + + E L+ G P+ ++ Y F +FL ++V Sbjct: 88 WQDAMSWQHNTPDQEAYFAKMKEYDLI--HGFGIPLYGRNARDAYASF--DFLKHVDDVA 143 Query: 147 IEAHGACY---QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 E+ G QV + + + A L+ERE L A G + IA L +S Sbjct: 144 PESIGMIRSLSQVAHQRVVILVEHKLDAPALSEREVEVLTWAARGKSLSAIATILDISPD 203 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T Y KLD +R+ A+ KA+R G + Sbjct: 204 TAKTYSKRIYAKLDVSDRVGAVVKALRMGLV 234 >gi|296137313|ref|YP_003644555.1| two component transcriptional regulator, LuxR family [Thiomonas intermedia K12] gi|294341618|emb|CAZ90035.1| putative two-component system response regulator; CheY domain [Thiomonas sp. 3As] gi|295797435|gb|ADG32225.1| two component transcriptional regulator, LuxR family [Thiomonas intermedia K12] Length = 223 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 41/130 (31%), Positives = 61/130 (46%), Gaps = 16/130 (12%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR 172 FP L GY++ + L ++ G +++ F L + S+ + Sbjct: 94 FPA-LQAGAFGYLLKDRPKIELRAQLRRIQDGEPPLSPSIARRMVQHFTHLHRTMSAPSS 152 Query: 173 NL--------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 NL TERE+ LQL G GYT EIA +LGLS HTV Y+ KL+ +R +A Sbjct: 153 NLPQEEHIALTERESEVLQLVGKGYTLPEIAVQLGLSRHTVADYVKQIYRKLNISSRAEA 212 Query: 225 IAKAIRFGYI 234 +A+R G + Sbjct: 213 ALEAVRRGLV 222 >gi|229096760|ref|ZP_04227730.1| DNA-binding response regulator [Bacillus cereus Rock3-29] gi|228686602|gb|EEL40510.1| DNA-binding response regulator [Bacillus cereus Rock3-29] Length = 211 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V + + K+ + LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPALMGRSAVKKEIENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A+++G Sbjct: 155 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYG 209 >gi|239932624|ref|ZP_04689577.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440983|ref|ZP_06580373.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343878|gb|EFE70834.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS----AAR 172 L +G+++ + + + V + A G + ++ ++ + R++ Sbjct: 96 LRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRRLAAEYGDDGGNRAARDVLERA 155 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L +S TV +++ + KL A +R QA+ A G Sbjct: 156 RLTEREAEVLRLMARGLSNAEIAARLVVSTETVKSHVSAVLAKLGARDRTQAVIAAYESG 215 Query: 233 YIC 235 ++ Sbjct: 216 FVA 218 >gi|297562061|ref|YP_003681035.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846509|gb|ADH68529.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 218 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 10/118 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELF---KKRSSAARNLT 175 GY++ ++ L + V G V+ ++ L + R A LT Sbjct: 99 AGATGYLVKSAGREELLDAVRRVHAGEAVYTPGLAGLVLGEYRRLSSADRSREPEAPELT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+L G ++IA++LG+S TV ++ + KL NR++ + AI G Sbjct: 159 PRETEVLRLVAKGLAYKQIAQRLGISHRTVQNHVQNTLTKLHLHNRVELVRYAIDRGL 216 >gi|333028557|ref|ZP_08456621.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332748409|gb|EGJ78850.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 215 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 4/116 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----KRSSAARNLTERET 179 L +G+++ + + + V + A G L + + LT RE Sbjct: 92 LRAGADGFLLKRARPAEIVHAVRVVAAGDSLLFPAAVRRLADQHGGRAPAPFPGLTGREG 151 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+L G ++ EIA +L + TV ++ + KL A +R QA+ A G++ Sbjct: 152 EVLRLMARGLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFVA 207 >gi|300693076|ref|YP_003749049.1| two component heavy metal response transcriptional regulator [Ralstonia solanacearum PSI07] gi|299075113|emb|CBJ34395.1| Two component heavy metal response transcriptional regulator [Ralstonia solanacearum PSI07] Length = 201 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + YV +F +L + + + + A L+ERE L + Sbjct: 102 GADDYVTKPVDFEILVSIIETRLARNAR----------PRSPAPAVPLSEREVEVLAWSA 151 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EIA LGLS TV+ ++ +A KL RI+A+ KA G I Sbjct: 152 RGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSAGII 199 >gi|294628631|ref|ZP_06707191.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292831964|gb|EFF90313.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 213 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 5/114 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERE 178 L GYV + LA + G L + + + +LTERE Sbjct: 97 LRAGAAGYVYKDVDPEALAGAIRSVHAGHILLQPEVAGALLSQEEAQSGLGRGGSLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210 >gi|229102861|ref|ZP_04233555.1| DNA-binding response regulator [Bacillus cereus Rock3-28] gi|228680534|gb|EEL34717.1| DNA-binding response regulator [Bacillus cereus Rock3-28] Length = 211 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V + + K+ + LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPALMGRSAVKKEIENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A+++G Sbjct: 155 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKYG 209 >gi|254522250|ref|ZP_05134305.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219719841|gb|EED38366.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 217 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + Y++ L + + + A G I + L+ RET L+ Sbjct: 100 LQAGASAYLLKDMLRHELVDTIRMVA-GGRRAPIPPAVAASIAAHVVEDRLSPRETEVLR 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G +++ I E++ +S TV A++ S KL +R A+ +A+R G I Sbjct: 159 HVASGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALRRGIIS 210 >gi|29833019|ref|NP_827653.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29610140|dbj|BAC74188.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 213 Score = 101 bits (252), Expect = 9e-20, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 5/114 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERE 178 L GYV + LA + G L + + + +LTERE Sbjct: 97 LRAGAAGYVYKDVDPDALAGAIRSVHAGHILLQPEVAGALLSQEEANSGQGRGGSLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 157 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 210 >gi|238783332|ref|ZP_04627356.1| transcription regulator SdiA [Yersinia bercovieri ATCC 43970] gi|238715755|gb|EEQ07743.1| transcription regulator SdiA [Yersinia bercovieri ATCC 43970] Length = 238 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 87/222 (39%), Gaps = 12/222 (5%) Query: 21 LHLIQNRIK-ARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFH 79 L I N I F+ ++ +P + I NY+ + D +F+ Sbjct: 21 LQQISNYITLNTGFSFFSFVIREIYPITESRIYTFDNYNDSWRTLYEKNKLWKIDPVIFY 80 Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 +P + + +++ + +GI F + L + + ++ Sbjct: 81 ---KPMPQL-EYAVWDSLFFKGHEEIWAYGVEYGYQSGITFGMPLPQGYHSILSLSNMSH 136 Query: 140 MLANEVIIEAHG----ACYQVITDFLELFKKR---SSAARNLTERETSCLQLAGDGYTSE 192 + + I A C ++I + + + LT+RE L + DG TS Sbjct: 137 SITPKEISLAQSYFSKICVKIINSIILNAESPITFNKNNITLTKRELMILMFSVDGMTSH 196 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA K+ +S TV+ ++ + KL+ N+ QAI+KA+ G I Sbjct: 197 EIAGKIFISKSTVDFHMLNIIKKLNCKNKFQAISKALIMGLI 238 >gi|194366116|ref|YP_002028726.1| two component LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194348920|gb|ACF52043.1| two component transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 217 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + Y++ L + + + A G I + L+ RET L+ Sbjct: 100 LQAGASAYLLKDMLRHELVDTIRMVA-GGRRAPIPPAVAASIAAHVVEDRLSPRETEVLR 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G +++ I E++ +S TV A++ S KL +R A+ +A+R G I Sbjct: 159 HVAGGLSNKRIGERMQISEQTVKAHMKSLMDKLGVGDRTHAVTQALRRGIIS 210 >gi|239939692|ref|ZP_04691629.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239986176|ref|ZP_04706840.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291443118|ref|ZP_06582508.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346065|gb|EFE72969.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 216 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 58/119 (48%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L +G+++ ++ + + V + A G A Q+ +++ + + LT+ Sbjct: 96 LRAGADGFLLKRAKPSEIVHAVRLVAEGESLLFPVAVRQLASEYGTGRAREALDRAALTD 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE + L+L G ++ EIA L + + TV +++ S KL A +R QA+ A G++ Sbjct: 156 REAAVLRLMARGMSNAEIAADLVVGIQTVKSHVSSVLAKLGARDRTQAVIAAYESGFVA 214 >gi|186682728|ref|YP_001865924.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186465180|gb|ACC80981.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 221 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 11/116 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKR--------SSAAR 172 L GY++ + LA + G ++ L F S Sbjct: 95 LQNGAMGYLLKDTPSEELAVAIRAVYKGYTQLGPGIVKKLLTQFSNGTPIHSTPVPSTLN 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L+L G ++ EIA++L +S TV ++ + L+ +R QA A Sbjct: 155 ELTPREKEVLRLIATGASNREIAQELYISEGTVKNHVTNILNTLNLRDRTQAAIWA 210 >gi|159901957|gb|ABX10688.1| two-component system response regulator [uncultured planctomycete 8FN] Length = 210 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 6/116 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTERE 178 GYV +L + + A G + +T L + LT RE Sbjct: 95 ALGAVGYVTKGKPKELLCDAICQVAKGETVWSRDELRRVTGALATPRLDLDVEVPLTARE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G T++EIA L +S TV ++ + K+ +R QA A R G + Sbjct: 155 AEVLKHLTSGKTNKEIANSLTISYETVKEHVQNILRKIGVTDRTQAAVWAFRKGIV 210 >gi|21224488|ref|NP_630267.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|4007711|emb|CAA22396.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 260 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARN-LT 175 L GYV+ + L GA +I ++L+ + + + LT Sbjct: 140 LKSGACGYVLKSVADRDLVAACRAAMRDEPFLYPGAVTALIRNYLDRVRHGEETSDHILT 199 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G++S+EIAE L +S+ TV + + KL +R++ AIR G I Sbjct: 200 PREEEVLKLVAEGHSSKEIAEILFISIKTVQRHRANLLQKLGLRDRLELTRYAIRAGLI 258 >gi|229015963|ref|ZP_04172924.1| DNA-binding response regulator [Bacillus cereus AH1273] gi|229022180|ref|ZP_04178730.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228739111|gb|EEL89557.1| DNA-binding response regulator [Bacillus cereus AH1272] gi|228745323|gb|EEL95364.1| DNA-binding response regulator [Bacillus cereus AH1273] Length = 213 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQSGADGYLLKDSSSEQVVAAIRMLYQGDSVIHPRMTKKLITYHQQKMKLESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|227112193|ref|ZP_03825849.1| quorum-sensing transcriptional activator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 244 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 66/196 (33%), Gaps = 21/196 (10%) Query: 58 DLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEG 110 + P ++ Y D + + + P W + + + Q Sbjct: 34 PYIISNYPEAWMKEYIKKEMFLSDPIIVASLARITPFSWDD-NDLVTLRAKNQDVFISSV 92 Query: 111 GLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--------ITDFLE 162 +G F + + + + E ++ H Q+ + + Sbjct: 93 QHDISSGYTFVLHDHDNNVATLSIANHLEDANFEKCMKNHENDLQMLLVNVHEKVMAYQR 152 Query: 163 LFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + + N L+ RET L L G T +E++ LG+S TV ++ ++ KLD Sbjct: 153 AINVQDNPPDNSRNALLSPRETEVLFLVSSGRTYKEVSRILGISEVTVKFHINNSVRKLD 212 Query: 218 AVNRIQAIAKAIRFGY 233 +N AI KA+ Sbjct: 213 VINSRHAITKALELNL 228 >gi|225862611|ref|YP_002747989.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102] gi|225789899|gb|ACO30116.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB102] Length = 213 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQAGADGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLITYHQQKMKVESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|301052287|ref|YP_003790498.1| transcriptional regulator [Bacillus anthracis CI] gi|300374456|gb|ADK03360.1| transcriptional regulator [Bacillus cereus biovar anthracis str. CI] Length = 213 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQAGADGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLITYHQQKMKVESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|228907986|ref|ZP_04071836.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228851652|gb|EEM96456.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 213 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQAGADGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLITYHQQKMKVESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|228918143|ref|ZP_04081650.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841505|gb|EEM86641.1| DNA-binding response regulator [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 213 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQAGADGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLITYHQQKMKVESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|229156108|ref|ZP_04284207.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] gi|228627429|gb|EEK84157.1| DNA-binding response regulator [Bacillus cereus ATCC 4342] Length = 213 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQAGADGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLITYHQQKMKVESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|206972973|ref|ZP_03233895.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134] gi|228924979|ref|ZP_04088109.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229182326|ref|ZP_04309600.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|229194039|ref|ZP_04320933.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|206731857|gb|EDZ49057.1| transcriptional regulatory protein DegU [Bacillus cereus AH1134] gi|228589439|gb|EEK47364.1| DNA-binding response regulator [Bacillus cereus ATCC 10876] gi|228601135|gb|EEK58682.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228834642|gb|EEM80151.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 213 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQAGADGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLITYHQQKMKVESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|196047172|ref|ZP_03114389.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108] gi|229182965|ref|ZP_04310198.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|196022042|gb|EDX60732.1| transcriptional regulatory protein DegU [Bacillus cereus 03BB108] gi|228600589|gb|EEK58176.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 213 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQAGADGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLITYHQQKMKVESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|196041819|ref|ZP_03109108.1| transcriptional regulatory protein DegU [Bacillus cereus NVH0597-99] gi|229028432|ref|ZP_04184554.1| DNA-binding response regulator [Bacillus cereus AH1271] gi|196027313|gb|EDX65931.1| transcriptional regulatory protein DegU [Bacillus cereus NVH0597-99] gi|228732881|gb|EEL83741.1| DNA-binding response regulator [Bacillus cereus AH1271] Length = 213 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQAGADGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLITYHQQKMKVESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|47568085|ref|ZP_00238790.1| DNA-binding response regulator [Bacillus cereus G9241] gi|229042495|ref|ZP_04190240.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229108243|ref|ZP_04237865.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229194950|ref|ZP_04321731.1| DNA-binding response regulator [Bacillus cereus m1293] gi|47555239|gb|EAL13585.1| DNA-binding response regulator [Bacillus cereus G9241] gi|228588518|gb|EEK46555.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228675259|gb|EEL30481.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|228726848|gb|EEL78060.1| DNA-binding response regulator [Bacillus cereus AH676] Length = 213 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQAGADGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLITYHQQKMKVESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|134097815|ref|YP_001103476.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005549|ref|ZP_06563522.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910438|emb|CAM00551.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 217 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA-ARNLT 175 L +G+++ ++ L V + A G A +++ + +R+SA R+LT Sbjct: 97 LRAGASGFLVKSTPPEDLIGLVRVAADGHTVLSLEATRRLVAASADEHGQRASALVRDLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ERE L G+G ++ +IAE+L LS TV ++ KL NR QA A G + Sbjct: 157 EREREVLACLGEGLSNAQIAERLFLSEATVKGHVSRTMTKLRCTNRTQAGLLAYDAGLVS 216 >gi|29827472|ref|NP_822106.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29604571|dbj|BAC68641.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 235 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNL------ 174 L +G+++ + L V + A G V + F R +R L Sbjct: 106 LRAGASGFLLKDTPPSELLAAVRVIAAGEALLAPAVTRRLIAEFVHRPEPSRPLRRTLDG 165 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE L L G ++ EIAE+L L + TV ++ KL +R Q + A G Sbjct: 166 VTEREREVLTLIACGLSNTEIAERLYLGIATVKTHVSHLLTKLATRDRAQLVIVAYESGL 225 Query: 234 IC 235 + Sbjct: 226 VT 227 >gi|182437898|ref|YP_001825617.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778534|ref|ZP_08237799.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178466414|dbj|BAG20934.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658867|gb|EGE43713.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 226 Score = 101 bits (251), Expect = 9e-20, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARN--- 173 L +G+++ L + + A +++ F + +N Sbjct: 97 LKAGASGFMLKDVPPAELLAAIRSVHSGDAVVAPSTTRRLLDRFSPMLPSGDKEPKNKHV 156 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + L G ++ EIA +L LS TV ++G KL+ +R+Q + A Sbjct: 157 GKLTEREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYET 216 Query: 232 GYI 234 G + Sbjct: 217 GLV 219 >gi|297203477|ref|ZP_06920874.1| two-component system regulatory protein [Streptomyces sviceus ATCC 29083] gi|297148424|gb|EFH28981.1| two-component system regulatory protein [Streptomyces sviceus ATCC 29083] Length = 220 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA--RNL 174 L +G+++ +E L + + A G +I +F RS+A L Sbjct: 96 LRAGASGFLLKDTEPADLLQAIEVVARGEALLSPAVTRTLIGEFASRPPDRSTAPGLECL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LA G T+EEIAE + +S T ++ A KL A +R Q + A G + Sbjct: 156 TRREREVTALAARGLTNEEIAEHMVISPLTAKTHISRAMTKLGARDRAQLVVFAYESGLV 215 Query: 235 C 235 Sbjct: 216 T 216 >gi|29831224|ref|NP_825858.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608339|dbj|BAC72393.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 223 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAA----- 171 L +G+++ L + + A +++ F + Sbjct: 95 LKAGASGFMLKDVPPGELLTAIRSVHSGDAVVAPSTTRRLLDRFAPMLPSAGKEPQFKEL 154 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 ERLTDREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|298242114|ref|ZP_06965921.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555168|gb|EFH89032.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 221 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS-AARNLT 175 + GY++ ++ L + + G ++I F L + S+ A +LT Sbjct: 102 MRAGARGYLLKDADRDELVRAIKAVSQGEAIFSPAIAQRMIRYFSALPRTASAIAFPDLT 161 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ERE L L G ++ IA++ LS+ TV ++ + KL +R QAI +A G Sbjct: 162 ERERQILHLIAQGESNTAIAKRFTLSLKTVQNHVSNIFSKLQVADRAQAIVRARDAGL 219 >gi|148272451|ref|YP_001222012.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830381|emb|CAN01316.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 232 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 18/129 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK-------------- 166 L +G+++ + L + A G +V +EL Sbjct: 100 LRAGASGFLVKDTRPEHLMEAIRAVADGDAAISPRVTRRMIELLGPTMPATGGAAGTGEG 159 Query: 167 -RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R LT RE L +G T++EIA +L LS TV ++G KL+ +R+QA+ Sbjct: 160 AADPRLRPLTARELEVLTALAEGLTNQEIAGRLYLSESTVKTHVGRVLAKLEVRDRVQAV 219 Query: 226 AKAIRFGYI 234 A G + Sbjct: 220 ILAYDCGLV 228 >gi|167645327|ref|YP_001682990.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167347757|gb|ABZ70492.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 257 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 64/168 (38%), Gaps = 9/168 (5%) Query: 75 DFLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGY 131 F+ P + + A I P L G Sbjct: 78 PFILAARCTAEPFFYHQGRFASWRPLARLEAIEVGEAAKAFGVEAAIIAPAHLTGGVIGA 137 Query: 132 VIFTS-----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 V++ S + L E HGA ++++ + + R LT+RE CL+ A Sbjct: 138 VVWASAEPLADLPALYAARSDELHGAALRLVSAYRDGCDDDVPPVR-LTKREIQCLKWAA 196 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T +IA+ +G++ TV ++ +A +KL R QA+ +A GYI Sbjct: 197 AGKTDADIAQIIGIAGPTVRFHVQNAALKLRVAGRAQAVHRATGLGYI 244 >gi|326384821|ref|ZP_08206497.1| LuxR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326196483|gb|EGD53681.1| LuxR family transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 229 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKK---RSSAARN 173 L +G+++ + L V A G ++IT+F R + Sbjct: 100 LRGGASGFLLKDTPPEELLEAVRTVARGDALLAPAVTRRLITEFARAPTAPTSRPAVLDV 159 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE +L G ++ EIA++L L + TV ++G KLDA +R+ + +A G Sbjct: 160 LTERELEVFELVAVGLSNGEIADRLHLGLTTVKTHIGRLLTKLDARDRVHLVIRAYETGL 219 Query: 234 IC 235 + Sbjct: 220 VS 221 >gi|282862337|ref|ZP_06271399.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562676|gb|EFB68216.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 222 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN------- 173 L GY+ + + + G +V LE + Sbjct: 91 LQAGARGYLTKDARGEEIVQAIDAVMSGEAGLSPKVQRRLLERVTGSETVPAPCALPSEL 150 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L +G ++ EIA L +S TV ++ + K A +R QA+ A Sbjct: 151 PDGLTPREAEVLVLIAEGLSNREIARALHVSAATVKTHINNLFAKTGARDRTQAVRYAYG 210 Query: 231 FGY 233 G Sbjct: 211 RGL 213 >gi|238653897|emb|CAV30841.1| Transcriptional Regulator, LuxR family [magnetite-containing magnetic vibrio] Length = 261 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 5/186 (2%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 NY + D L + D H S I+ S + + + Sbjct: 74 FSNYSKEWQDEYEKLGGSQNDIDTLHCISSTEDQIFFSPETRENLTPEQKAIDEFAQRSG 133 Query: 114 PFAGIAFPVRLGFHKN--GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 GI+FP+R G N G + ++ +++ ++I + A Sbjct: 134 IKNGISFPLRAGPDINDWGGLGLSTRMDDDEFSAVLDERRDYLRLIAQVFHAVTQSRPLA 193 Query: 172 RN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +N LTE+E L L G +++IA+KLG+S V+ ++ AT KL + R QA+A+A Sbjct: 194 KNALLLTEKEKQALSLTAKGLKTKQIADKLGMSDKAVDQHIARATAKLASTTRTQAVAEA 253 Query: 229 IRFGYI 234 IR + Sbjct: 254 IRLHIL 259 >gi|57234205|ref|YP_181778.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224653|gb|AAW39710.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] Length = 232 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 50/120 (41%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS--AARNL 174 L YV+ S L V G Y + I ++E + +S L Sbjct: 94 LRAGARAYVLKDSTSEELVRSVREAVQGHRYLSSPLSEKAIEAYMEKSAEATSLDPYETL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G+T EIAE+L +S TV + + KLD N+ Q + A++ G I Sbjct: 154 TIREREVLHLVAQGHTCAEIAERLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213 >gi|229079676|ref|ZP_04212209.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228703516|gb|EEL55969.1| DNA-binding response regulator [Bacillus cereus Rock4-2] Length = 213 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQAGADGYLLKDSSSDQVVAAIRMLYRGDSVIHPRMTKKLITYHQQKMKVESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|254443406|ref|ZP_05056882.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198257714|gb|EDY82022.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 224 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 2/108 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 Y++ +A+ V E H + E ++RS + LTERE L+ Sbjct: 116 GAKSYLLKDMSVEEIASTVR-EVHEGISSLPRQVAERLEERSKR-QQLTERERDVLEYLI 173 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA L LS TV ++L S KL +R +A +AIR G + Sbjct: 174 KGRSNKEIASSLYLSEETVKSHLKSLFAKLKVRDRTEAAIEAIRHGIV 221 >gi|298247251|ref|ZP_06971056.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549910|gb|EFH83776.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 222 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173 + +GY++ L + A G + +L + Sbjct: 99 MRAGASGYLLKDCSAEELCTAIRAVARGQILLQASSAAQLLASLQTKPVAAAPLSVAEQL 158 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L G ++ EIA L +S TV ++ KL A NR QAI KA + G Sbjct: 159 GLTTRELEVLRLVTLGQSNTEIAAALFVSDATVKTHINHIFSKLGARNRSQAIIKARQLG 218 Query: 233 Y 233 Sbjct: 219 L 219 >gi|229156784|ref|ZP_04284871.1| Two-component protein Kinase [Bacillus cereus ATCC 4342] gi|228626704|gb|EEK83444.1| Two-component protein Kinase [Bacillus cereus ATCC 4342] Length = 595 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKEPPQSKATAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 532 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|229196490|ref|ZP_04323234.1| DNA-binding response regulator [Bacillus cereus m1293] gi|228586846|gb|EEK44920.1| DNA-binding response regulator [Bacillus cereus m1293] Length = 214 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 4/113 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL-ELFKKRSSAARNLTERET 179 L +GY + + L +I G +V L K+ + LT+RE Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAVHEGNTNFHPKVTPALLGRSVVKKENPFSMLTKREQ 154 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ G +++EIA L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EVLREIAKGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 207 >gi|118476319|ref|YP_893470.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] gi|118415544|gb|ABK83963.1| DNA-binding response regulator [Bacillus thuringiensis str. Al Hakam] Length = 216 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 97 LQAGADGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLITYHQQKMKVESNENELTER 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 157 EKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 213 >gi|308176141|ref|YP_003915547.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307743604|emb|CBT74576.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 224 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 14/128 (10%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR 172 PV L +GY++ SE + + G +++ E ++ S + Sbjct: 93 VPV-LTAGASGYLVKDSEPDEIIRAIHAVHQGTAAISPSVSSDLVSAVREAYRDNSGDIQ 151 Query: 173 NL------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L T RE L+L G + EI++ L +S TV ++ VKLD +R+QA+ Sbjct: 152 ELVYDLGITNREFEILKLLAKGLNNPEISKTLAISETTVKTHMAKIFVKLDVRDRVQALV 211 Query: 227 KAIRFGYI 234 A R G I Sbjct: 212 AATRMGLI 219 >gi|309789968|ref|ZP_07684544.1| response regulator receiver [Oscillochloris trichoides DG6] gi|308227988|gb|EFO81640.1| response regulator receiver [Oscillochloris trichoides DG6] Length = 253 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 7/99 (7%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIA 195 N+V++E +V++ F L + ++ L+ERE L+ G +++EIA Sbjct: 135 NDVVLEEPQVAKRVLSQFRNLPEATATDPAADFPIFTPLSEREIEVLERIAAGGSNKEIA 194 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L +S TV ++ S KL +R QA+ A+R G+I Sbjct: 195 DSLSISTQTVKNHISSILRKLSLNDRTQAVLFALRRGWI 233 >gi|320107298|ref|YP_004182888.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925819|gb|ADV82894.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 204 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ L + + H +V + + + + L+ RE L+ Sbjct: 96 AGASGYLLKNMLRAELVDTIRSV-HAGIRRVPAEIAAMMAEH-AGDEALSPREVEVLRHV 153 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++++ IA L LS HT+ +L + KL A +R A+ A+ G++ Sbjct: 154 SAGHSNKVIASDLDLSEHTIKGHLKNILSKLGANDRTHAVMIALNRGFL 202 >gi|308175040|ref|YP_003921745.1| transcriptional regulatory protein liaR [Bacillus amyloliquefaciens DSM 7] gi|307607904|emb|CBI44275.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens DSM 7] gi|328555009|gb|AEB25501.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens TA208] gi|328913364|gb|AEB64960.1| Transcriptional regulatory protein liaR [Bacillus amyloliquefaciens LL3] Length = 210 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 10/124 (8%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA 171 +PV + Y++ TS+ +A + A G +V++ + Sbjct: 90 VYPV-IEAGALSYLLKTSKAAEIAEAIRAAAKGEPKLESKVAGKVLSRLRH--SENQLPH 146 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L +G T++EI E+L +++ TV ++ + KLD +R QA A R Sbjct: 147 ETLTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRN 206 Query: 232 GYIC 235 + Sbjct: 207 HLVT 210 >gi|228950550|ref|ZP_04112691.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809127|gb|EEM55607.1| DNA-binding response regulator [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 213 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQAGADGYLLKDSSSEQVLAAIRMLYRGDSVIHPRMTKKLITYHQQKMKVESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|298244698|ref|ZP_06968504.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552179|gb|EFH86044.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 220 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 8/122 (6%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR 172 FP + Y++ + L + A G +V+ + K S Sbjct: 94 FP-TIRAGALSYLLKEAALSELTEAIRKAARGEVVLHPHVAARVLQELRGTNKDASKLYA 152 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L G ++ +IA +L +S TV +++ + KL +R QA R G Sbjct: 153 TLSEREREVLNWIAQGLSNGQIAARLVISERTVKSHVNNILGKLQVSDRTQAAIYVWREG 212 Query: 233 YI 234 + Sbjct: 213 MV 214 >gi|206971450|ref|ZP_03232400.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH1134] gi|206733435|gb|EDZ50607.1| DNA-binding response regulator, LuxR family [Bacillus cereus AH1134] Length = 213 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V + + K+ + LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPALMGRSAVKKEVENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|158312386|ref|YP_001504894.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158107791|gb|ABW09988.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 201 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ T +LA+ V+ HG V + + ++ LT RE L+ Sbjct: 94 LAAGARGFLPKTVSVQVLAD-VVRVVHGGGRYVDPELAA--EAIAAGDSPLTPREAEVLE 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G EEIA +L LS TV YL SA KL AVNR +A+ A G+I Sbjct: 151 LAAGGAPVEEIAARLSLSRGTVRNYLSSAVAKLGAVNRHEAVQLARVRGWI 201 >gi|294102345|ref|YP_003554203.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] gi|293617325|gb|ADE57479.1| two component transcriptional regulator, LuxR family [Aminobacterium colombiense DSM 12261] Length = 231 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 6/115 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNL---TERE 178 G+V+ S + L + + Y QV L F +R L T RE Sbjct: 97 SVGVLGFVLKASGRVELLSAIRSANRNQPYVDPQVAGKLLTSFSRRKEENDQLYELTPRE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G ++ E+A K+ LS TV ++ KLD +R QA A R G+ Sbjct: 157 KEILYWLAQGLSNSEVASKMVLSEKTVKNHVSHVLKKLDLRDRTQAAILAWRIGF 211 >gi|297202175|ref|ZP_06919572.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197713613|gb|EDY57647.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 205 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + +++ + LA V G + + D + A LT+RE L+ A Sbjct: 101 GADAFLVKDAPAAQLAEAVRKVLAG---ERVIDPTLAAAALAEGANPLTDREREVLRAAA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ E+A+ L LS TV YL +A KL NR +A+ A G++ Sbjct: 158 DGSTNAELAQTLHLSQGTVRNYLSTAIQKLAVRNRAEAVRIAREKGWL 205 >gi|89100033|ref|ZP_01172903.1| response regulator [Bacillus sp. NRRL B-14911] gi|89085267|gb|EAR64398.1| response regulator [Bacillus sp. NRRL B-14911] Length = 210 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSS--AARNLTERE 178 L + Y++ TS+ +A+ V HG +V + +++ + LT RE Sbjct: 94 LEAGASSYMLKTSKASEIADAVRATFHGQSVLEPEVTGKMMVKMRQKQTVLPHEELTSRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L +G T++EIA++L +++ TV ++ + KL +R QA+ A + Sbjct: 154 MEILLLMTEGKTNQEIADELFIALKTVKTHVSNILSKLQVQDRTQAVIYAFKHSL 208 >gi|297190315|ref|ZP_06907713.1| regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|297150449|gb|EDY66317.2| regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 283 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 9/119 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NLTE 176 +G+++ +E + L + + + + G ++I +F + + R LT Sbjct: 160 AGASGFLVKDTEPMELLHGIRVCSRGDALIAPKVTRRLIAEFTNRIRHPDPSPRLNALTA 219 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L L G G T++EIA +L LS T ++ KL A +R Q + A G I Sbjct: 220 REHEVLGLVGAGLTNDEIARRLVLSPATAKTHVSRIMSKLGARDRTQLVITAYESGMIT 278 >gi|302535350|ref|ZP_07287692.1| two-component system response regulator [Streptomyces sp. C] gi|302444245|gb|EFL16061.1| two-component system response regulator [Streptomyces sp. C] Length = 219 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFK----KRSSAAR 172 L +G+++ + LA V + A G ++I++F +L S Sbjct: 95 LRAGASGFLLKDASARQLAEGVRVVAAGEALLAPSVTKRLISEFSKLSDVQRAADPSGVS 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA++L ++ T+ ++ VKL +R QA A Sbjct: 155 ELTERETEVLVLIAQGLSNGEIADRLLVAESTIKTHVSRILVKLGLRDRTQAAVYAYETR 214 Query: 233 YIC 235 + Sbjct: 215 LVT 217 >gi|239929757|ref|ZP_04686710.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 224 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELF-----KKRSSAA 171 L +G+++ L + G +++ F + + Sbjct: 95 LKAGASGFMLKDVPPGELLAAIRAVHSGDAVVAPSTTRRLLDRFAPMLPGTGKQPAHKEL 154 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 ERLTEREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|194364877|ref|YP_002027487.1| two component LuxR family transcriptional regulator [Stenotrophomonas maltophilia R551-3] gi|194347681|gb|ACF50804.1| two component transcriptional regulator, LuxR family [Stenotrophomonas maltophilia R551-3] Length = 213 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 19/125 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--------------QVITDFLELFKKRSS 169 L GY++ L + A G + DF+ L + Sbjct: 94 LKAGAKGYLLKDVTLAQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNDFVSLDR---- 149 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA Sbjct: 150 -PDPLTDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAF 208 Query: 230 RFGYI 234 + Sbjct: 209 ELQLV 213 >gi|28869333|ref|NP_791952.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|28852574|gb|AAO55647.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|330878542|gb|EGH12691.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|331019215|gb|EGH99271.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 222 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 7/118 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTER 177 GY++ + + + + A G +++ E +S LT R Sbjct: 98 SAGAVGYLLKDASRDEVIDGLQRVARGEEALNSAVSARLLRRMTERNTSGASVPEALTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L L G+++ EI EKLG++ T A++ KL A +R QA + + G + Sbjct: 158 ERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLVS 215 >gi|218897232|ref|YP_002445643.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842] gi|218545309|gb|ACK97703.1| DNA-binding response regulator, LuxR family [Bacillus cereus G9842] Length = 213 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V + + K+ + LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPALMGRSAVKKEIENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|315647821|ref|ZP_07900922.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315276467|gb|EFU39810.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 222 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 46/127 (36%), Gaps = 18/127 (14%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR------ 172 GY++ E L + G A ++T SS+ Sbjct: 96 AGARGYLLKDIEPEELVAAIRRVFQGMVELHPDAAGLLMTHVTLPEGAESSSGPGRQEEA 155 Query: 173 -----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE LQL G + EI+E L ++ TV ++ KL +R QA Sbjct: 156 VQELDKLTRREQEVLQLIASGMNNREISEALYITEKTVKTHVSHLLDKLGVADRTQAAIY 215 Query: 228 AIRFGYI 234 A++ G + Sbjct: 216 ALKHGIV 222 >gi|108799996|ref|YP_640193.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119869121|ref|YP_939073.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|108770415|gb|ABG09137.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119695210|gb|ABL92283.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] Length = 218 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS--AARNLTE 176 GY++ ++ L+ V A G V+ ++ + ++ + +A LTE Sbjct: 100 AGATGYLVKSASKAELSAAVRATADGRAVFTPGLAGLVLGEYRRIAQRPDTGDSAPTLTE 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+ G T+++IA +L LS TV ++ + KL NR++ AI G Sbjct: 160 RETEVLRHVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 216 >gi|21233332|ref|NP_639249.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66770294|ref|YP_245056.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|21115164|gb|AAM43131.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575626|gb|AAY51036.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] Length = 200 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + + G +VI L + A L+ERE + L+ Sbjct: 94 LDAGVAGYLLKDAPAEQLVSALRTVQRGG--RVIDPQLAM--DAWVEADPLSERERTVLR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG+G ++ EIA++L LS TV YL KL NRI+A A + G++ Sbjct: 150 LAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200 >gi|81428161|ref|YP_395161.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78609803|emb|CAI54849.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 201 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 3/110 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ L + G + L + L++RET LQ Sbjct: 95 SAEVAGYLLKDGPSDDLIVAIHSVMAGKTVYAPELVVGLTNQ---PQNPLSQRETDVLQA 151 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++E+A +L LS TV Y+ + KL A NRI+AI A G++ Sbjct: 152 VANGLSNKEVASQLFLSDGTVRNYMSTILSKLAASNRIEAIQIARHNGWL 201 >gi|330469956|ref|YP_004407699.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328812927|gb|AEB47099.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 218 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 12/120 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELF-----KKRSSAARN 173 GY++ ++ + V A G V+ ++ L + A Sbjct: 97 AGATGYLLKSAALAEFLDAVRRTAAGEPVFTPGLAGLVLGEYRRLAAAGGPEPGQDTAPR 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L+L G + ++IAE+LGLS TV ++ + KL NR++ AI G Sbjct: 157 LTERETEVLRLVAKGMSYKQIAERLGLSHRTVQNHVQNTLGKLQLHNRVELTRYAIERGL 216 >gi|323488502|ref|ZP_08093746.1| DNA-binding response regulator [Planococcus donghaensis MPA1U2] gi|323397719|gb|EGA90521.1| DNA-binding response regulator [Planococcus donghaensis MPA1U2] Length = 211 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 53/112 (47%), Gaps = 4/112 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSS-AARNLTERETSCL 182 +GY++ S + + + A G + L + K+ ++ + LT RE L Sbjct: 97 GADGYLLKDSPSKDVIDAIRTVAGGESVIPPGMTKKLLSMHKQENNQEDKTLTPREMEVL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +G ++++IA +L +S TV ++ + K D +R QAI A++ + Sbjct: 157 LVLVEGLSNKDIATRLYISDKTVKIHVSNIFKKFDVKSRSQAIIFAVQNNLV 208 >gi|302552999|ref|ZP_07305341.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] gi|302470617|gb|EFL33710.1| two-component system regulator [Streptomyces viridochromogenes DSM 40736] Length = 221 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL------ELFKKRSSA 170 L +G+++ + LA+ V + A G ++IT+F L +A Sbjct: 95 LRAGASGFLLKDASARQLADGVRVVASGEALLAPSVTRRLITEFSKLSETPRLMPSAQAA 154 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LTERET L L G ++ EIAE+L ++ T+ ++ VKL +R QA A Sbjct: 155 YGDLTERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYE 214 Query: 231 FGYIC 235 + Sbjct: 215 ARLVT 219 >gi|190404427|ref|YP_001961058.1| rcorf83 [Agrobacterium rhizogenes] gi|158322223|gb|ABW33640.1| rcorf83 [Agrobacterium rhizogenes] Length = 224 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 71/216 (32%), Gaps = 9/216 (4%) Query: 23 LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82 +++ + + F + R ++Y DI + D + Sbjct: 14 ALKSFVNSHGFERFAYLQTEGLEIR-----TFNSYPEGWQDIYLGGQYSRIDPVITEAKR 68 Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 + W + S + +G+ PV F + F S + Sbjct: 69 RMEMFYWTADDWPARGTSELRRFRDQAIEHGIRSGLTIPVEGSFGSTMMLTFASSEKKVE 128 Query: 143 NEVIIEAHGACYQVITDFLELFKKRS----SAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +++A A V+ L S + R L+ RE CL A G ++ E A Sbjct: 129 KAKLLDAQKAVRTVLAIHYRLKIIASTTIIAPKRLLSPREAMCLMWAAKGKSAPETAMLT 188 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++ TV YL A KLDA +A A G + Sbjct: 189 GINARTVQHYLDKAREKLDAATVPHLVAIAKDHGLV 224 >gi|154687422|ref|YP_001422583.1| YvqC [Bacillus amyloliquefaciens FZB42] gi|154353273|gb|ABS75352.1| YvqC [Bacillus amyloliquefaciens FZB42] Length = 210 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 10/124 (8%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA 171 +PV + Y++ TS+ +A + A G +V++ + Sbjct: 90 VYPV-IEAGALSYLLKTSKAAEIAEAIRAAAKGEPKLESKVAGKVLSRLRH--SENQLPH 146 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L +G T++EI E+L +++ TV ++ + KLD +R QA A R Sbjct: 147 ETLTKRELEILCLVAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRN 206 Query: 232 GYIC 235 + Sbjct: 207 HLVT 210 >gi|329940979|ref|ZP_08290259.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329300273|gb|EGG44171.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 255 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 18/125 (14%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA--------- 170 GY++ ++ L + V A G V+ ++ L + + A Sbjct: 128 GATGYLVKSASTEELVDAVRRTAAGDPVFTPGLAGLVLGEYRRLAAEPAPAPESGEAGET 187 Query: 171 --ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + A Sbjct: 188 ARAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYA 247 Query: 229 IRFGY 233 I G Sbjct: 248 IERGL 252 >gi|330809798|ref|YP_004354260.1| two-component system response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327377906|gb|AEA69256.1| putative two-component system response regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 222 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 7/118 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTER 177 G GY++ + + + + A G +++ E ++ + LT R Sbjct: 98 GAGAVGYLLKDASRDEVLDALKRVAQGEEALNSSVSARLLRRMTERGANGATQVQALTAR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L L G+++ EI EKLG++ T A++ KL A +R QA + + G + Sbjct: 158 ERQVLGLVAGGFSNREIGEKLGIAPGTAKAHVERVIGKLGAADRTQAAVRGVALGLVA 215 >gi|94971316|ref|YP_593364.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94553366|gb|ABF43290.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 218 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR------NL 174 L GYV+ + L V G Y QV+ +E F+ R A+ L Sbjct: 93 LEVGAAGYVLKDTPAPQLVTAVRDVYKGGKYLSSQVLGKLVEDFRARVRDAKLRPRISTL 152 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L +G + +EIA LGLSV TV A+ + KLD N+ Q + AI+ I Sbjct: 153 TPREREILKLLAEGNSVKEIAVLLGLSVKTVEAHKFNLMRKLDIHNKAQLVTYAIQKKII 212 >gi|56718415|gb|AAW27922.1| SplR [Serratia plymuthica] Length = 249 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 67/223 (30%), Gaps = 25/223 (11%) Query: 37 TINSALDFPRRQQLICELHNYD--LDSGDIPNILIETY-------GDDFLFHFNSGLLPI 87 S+L P + N L P+ ++ Y D + P Sbjct: 21 RKLSSLGSPEYAYTVVRKKNPSDVLIISSYPDEWVDLYCANNFQLTDPVILTAFKRTSPF 80 Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--FTSEFLMLANEV 145 W + + L G F + + + S + Sbjct: 81 AWDE-NITLMSDLKFTKIFSLSKQYNIINGFTFVLHDHMNNLALLSVIIASNGQEELEKR 139 Query: 146 IIEAHGACYQVITDFLELFKKRSSAARN-------------LTERETSCLQLAGDGYTSE 192 + GA ++ D E + + AA + T RE L A G T Sbjct: 140 LSSERGAMQMLLIDINEQMYRLAGAASSSNQKYHTDADKPIFTPRENEVLYWASMGKTYG 199 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 EIA G+SV TV ++G+ VKL N QAI + I Sbjct: 200 EIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELIT 242 >gi|239942209|ref|ZP_04694146.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988676|ref|ZP_04709340.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445663|ref|ZP_06585053.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348610|gb|EFE75514.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 226 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARN--- 173 L +G+++ L + + A +++ F + +N Sbjct: 97 LKAGASGFMLKDVPPAELLAAIRSVHSGDAVVAPSTTRRLLDRFSPMLPSGEKEPKNKHV 156 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + L G ++ EIA +L LS TV ++G KL+ +R+Q + A Sbjct: 157 GKLTEREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLNLRDRVQVVVLAYET 216 Query: 232 GYI 234 G + Sbjct: 217 GLV 219 >gi|228900854|ref|ZP_04065069.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] gi|228965235|ref|ZP_04126329.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228794469|gb|EEM41981.1| DNA-binding response regulator [Bacillus thuringiensis serovar sotto str. T04001] gi|228858780|gb|EEN03225.1| DNA-binding response regulator [Bacillus thuringiensis IBL 4222] Length = 209 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V + + K+ + LT+R Sbjct: 91 LEAGADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPALMGRSAVKKEIENPFSMLTKR 150 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 151 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205 >gi|54024206|ref|YP_118448.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54015714|dbj|BAD57084.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 222 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQ 183 GYV+ + L + + A + + + + LT+RET L+ Sbjct: 112 RGAKGYVLKDVDTTALVSSIRAVARDESAFDPRSASVMMRTIRTAPEEPTLTDRETKVLE 171 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EI +L +S TV ++ + KL A R A+ +A + G I Sbjct: 172 LLARGMSNREIGGRLYISETTVKFHVRNIMRKLSASTRAGAVYEASKLGLI 222 >gi|333027751|ref|ZP_08455815.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332747603|gb|EGJ78044.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 216 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 14/121 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSS-------AAR 172 GY++ ++ L V A G V+ ++ L + Sbjct: 92 GATGYLVKSASTEELIEAVRRTAVGDAVFTPGLAGLVLGEYRRLAAEPEPKTSGGGPETP 151 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 152 RLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQG 211 Query: 233 Y 233 Sbjct: 212 L 212 >gi|302557464|ref|ZP_07309806.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302475082|gb|EFL38175.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 230 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNL-- 174 L +G+++ + L + + + A G ++I F +A L Sbjct: 108 LQAGASGFMLKDAGPAELLHAIRVVAAGDALLAPRITRRLIGQFTSQRVAAQAAEDRLSV 167 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L L G G +++EI +L LS T ++ A VKL A +R Q + A R G Sbjct: 168 LTQREREVLALVGQGLSNDEIGAELCLSPATARTHVSHAMVKLGARDRAQLVVVAYRTGL 227 Query: 234 IC 235 + Sbjct: 228 VS 229 >gi|309790624|ref|ZP_07685178.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] gi|308227352|gb|EFO81026.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] Length = 226 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 18/124 (14%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN---- 173 GY++ + LA+ + A G Q++ L ++ + A Sbjct: 99 AAGARGYLLKDVDHRALADAIRTVAAGGALLNPEITAQILPYLGRLAEQTAPAPVTTAPP 158 Query: 174 -------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTERE S LQ+ G +++EI+ L +SV TV ++ S KLD +R QA Sbjct: 159 HSERAELLTERERSILQMLAKGCSNQEISAALMISVGTVKNHISSILGKLDVRDRTQAAL 218 Query: 227 KAIR 230 AI+ Sbjct: 219 WAIQ 222 >gi|268322279|emb|CBH32801.1| putative regulatory gene [Streptomyces sp. C23201NS3] Length = 201 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ S L + + A G + DF S LTER+ L+ Sbjct: 94 LDIQVGGFLVKESPPEKLVSTIRELAAGLR---VIDFDLAVSAWQSPPPPLTERQLEILR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G EIA +L LS TV YL S T KL+A R+ A+ A G++ Sbjct: 151 LAAAGDGVPEIAARLHLSPGTVRNYLSSVTTKLNARTRMDAVRIAADAGWL 201 >gi|284801354|ref|YP_003413219.1| hypothetical protein LM5578_1104 [Listeria monocytogenes 08-5578] gi|284994496|ref|YP_003416264.1| hypothetical protein LM5923_1058 [Listeria monocytogenes 08-5923] gi|284056916|gb|ADB67857.1| hypothetical protein LM5578_1104 [Listeria monocytogenes 08-5578] gi|284059963|gb|ADB70902.1| hypothetical protein LM5923_1058 [Listeria monocytogenes 08-5923] Length = 212 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 52/116 (44%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERE 178 L + Y++ TS +A+ + G +V ++ + +LT RE Sbjct: 94 LEAGASSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRLTAKPEKNLHDDLTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KL +R QA A + + Sbjct: 154 NEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLGVQDRTQAAIYAFKHDLV 209 >gi|229059933|ref|ZP_04197307.1| DNA-binding response regulator [Bacillus cereus AH603] gi|228719346|gb|EEL70950.1| DNA-binding response regulator [Bacillus cereus AH603] Length = 211 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L ++ G +V L + K++ + LT+R Sbjct: 95 LEAGADGYQLKEVQPDQLVASIVAVYQGNANFHPKVTPALLGRSAVKKEKENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EQEVLREIAKGRSNKEIAAALHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|239945308|ref|ZP_04697245.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239991767|ref|ZP_04712431.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291448770|ref|ZP_06588160.1| two component system DNA binding response regulator [Streptomyces roseosporus NRRL 15998] gi|291351717|gb|EFE78621.1| two component system DNA binding response regulator [Streptomyces roseosporus NRRL 15998] Length = 217 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 50/109 (45%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + LA V A G + L + + A LT RE LQL Sbjct: 107 AGASGYLLKDAPPQELAAAVRTAAAGRSALAPSVAHRLMDRMRTPAEALTRRELEVLQLV 166 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G ++ +I+++L LS TV ++L KL +R A+A A I Sbjct: 167 GEGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 215 >gi|206973784|ref|ZP_03234702.1| DNA-binding response regulator, LuxR family [Bacillus cereus H3081.97] gi|222095860|ref|YP_002529917.1| response regulator [Bacillus cereus Q1] gi|206747940|gb|EDZ59329.1| DNA-binding response regulator, LuxR family [Bacillus cereus H3081.97] gi|221239918|gb|ACM12628.1| response regulator [Bacillus cereus Q1] Length = 213 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 4/113 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL-ELFKKRSSAARNLTERET 179 L +GY + + L +I G +V L K+ + LT+RE Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAVHEGNTNFHPKVTPALLGRSVVKKENPFSMLTKREQ 154 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ G +++EIA L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EVLREIAKGRSNKEIAAVLHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 207 >gi|312199837|ref|YP_004019898.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231173|gb|ADP84028.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 237 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS----AARNL 174 GY++ +A ++ +G +++++F + K + L Sbjct: 115 AGAMGYLLKEISIDEVAADIRAVYNGQSLISPSMASKLLSEFASMIKNKDDRPQLPTPRL 174 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 175 TDREMEVLRLVAKGLNNRDIAKQLFISENTVKNHIRNILEKLQLHSRMEAVVYAVREKLL 234 >gi|229178632|ref|ZP_04305996.1| DNA-binding response regulator [Bacillus cereus 172560W] gi|228604790|gb|EEK62247.1| DNA-binding response regulator [Bacillus cereus 172560W] Length = 192 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V + + K+ + LT+R Sbjct: 74 LEAGADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPALMGRSAVKKEVENPFSMLTKR 133 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 134 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 188 >gi|318057517|ref|ZP_07976240.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318081139|ref|ZP_07988471.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] Length = 226 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 14/121 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSS-------AAR 172 GY++ ++ L V A G V+ ++ L + A Sbjct: 102 GATGYLVKSASTEELIEAVRRTAVGDAVFTPGLAGLVLGEYRRLAAEPEPKTSGGGPEAP 161 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 162 RLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQG 221 Query: 233 Y 233 Sbjct: 222 L 222 >gi|222066054|emb|CAX21482.1| ppoR luxR family protein [Pseudomonas putida] Length = 235 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 62/188 (32%), Gaps = 17/188 (9%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 + P+ IE Y D + P++W + + + Q Sbjct: 53 YLYSNYPSEWIERYQRDDFYKQDPAARLSHGQTTPVLWT----DELYCEAPQFR-EAACQ 107 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----KK 166 G + H V +A + E + + + Sbjct: 108 HGLRHGWTQSLHDLQHNESQVSVARPAGQIAINELYEKAASVQWLCHTLHSVLCEHHLDA 167 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ERE L+ + G T+ ++A L LS TVN ++ S K +A N+ AIA Sbjct: 168 LCPPQPKMSERELEVLRWSAAGKTAADVASILSLSQSTVNFHIRSVITKTNASNKAGAIA 227 Query: 227 KAIRFGYI 234 A G+I Sbjct: 228 IAALRGWI 235 >gi|149186879|ref|ZP_01865189.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148829546|gb|EDL47987.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 226 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 70/213 (32%), Gaps = 20/213 (9%) Query: 31 RNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-------DDFLFHFNSG 83 + FA + D P S P IETY D F H Sbjct: 23 QGFAYMV--PSRDSPLTMVYK---------SRGYPEKFIETYQREKLYLIDPFPAHVTRH 71 Query: 84 LLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--SEFLML 141 + I ++ + + + + G+ P + + ++F ++ Sbjct: 72 KSTLRISEIAQQAKLSRAETDYIDRMKKMGITDGLIIPTFGMDLRIVKFVLGQVTDFSVI 131 Query: 142 ANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLS 201 N+ + E EL ++ R L RE L G T+ EIA LG++ Sbjct: 132 ENDNLFEFTATLQMAHRRLDELARQDEPIRRRLPRREVEILHWIAKGKTNAEIAAILGVA 191 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++ KLD +R K R+G I Sbjct: 192 APTVATHIARMFQKLDVNDRAALAVKGFRYGII 224 >gi|228958531|ref|ZP_04120251.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|229044008|ref|ZP_04191697.1| DNA-binding response regulator [Bacillus cereus AH676] gi|229127661|ref|ZP_04256650.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|296502827|ref|YP_003664527.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] gi|228655738|gb|EEL11587.1| DNA-binding response regulator [Bacillus cereus BDRD-Cer4] gi|228725289|gb|EEL76557.1| DNA-binding response regulator [Bacillus cereus AH676] gi|228801158|gb|EEM48055.1| DNA-binding response regulator [Bacillus thuringiensis serovar pakistani str. T13001] gi|296323879|gb|ADH06807.1| two-component response regulator yhcZ [Bacillus thuringiensis BMB171] Length = 192 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V + + K+ + LT+R Sbjct: 74 LEAGADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPALMGRSAVKKEVENPFSMLTKR 133 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 134 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 188 >gi|302517773|ref|ZP_07270115.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302426668|gb|EFK98483.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 219 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 4/116 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----KRSSAARNLTERET 179 L +G+++ + + + V + A G L + + LT RE Sbjct: 96 LRAGADGFLLKRARPAEIVHAVRVVAAGDSLLFPAAVRRLADHHGGRAPAPFPGLTGREG 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+L G ++ EIA +L + TV ++ + KL A +R QA+ A G++ Sbjct: 156 EVLRLMARGLSNAEIAARLVVGAETVKTHVSAVLAKLGARDRTQAVVLAYDSGFVA 211 >gi|225872958|ref|YP_002754415.1| two-component system regulatory protein [Acidobacterium capsulatum ATCC 51196] gi|225792212|gb|ACO32302.1| two-component system regulatory protein [Acidobacterium capsulatum ATCC 51196] Length = 216 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 2/110 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ TS L + + G +VI + + L++RE L+ Sbjct: 104 LRAGASGYLLKTSMRRDLLDTIRSVHSG--RKVIPPEIATAMAIYVSNDELSKRELEILR 161 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++ IAE+L +S TV +++ + KL A +R A+ A+R GY Sbjct: 162 QVAAGLPNKLIAERLSISPDTVKSHIANILSKLGANDRTHAVTLAVRRGY 211 >gi|149182664|ref|ZP_01861132.1| two-component response regulator [Bacillus sp. SG-1] gi|148849633|gb|EDL63815.1| two-component response regulator [Bacillus sp. SG-1] Length = 216 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 5/120 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSA-ARNL 174 FP + + Y++ T+ + + V G +V + F+ + +L Sbjct: 92 VFPA-IEAGAHSYLLKTASADEVVSAVYKAVKGESVIAPKVADKMMNRFRPQERKLHEDL 150 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+ G+G T++EI+++L + V T ++ + KL +R QA A R G + Sbjct: 151 TTRELEVLKCLGEGMTNQEISDELFIGVKTTKTHVSNILSKLGVADRTQAAIYANRNGIL 210 >gi|17989461|ref|NP_542094.1| transcriptional activator, LUXR family [Brucella melitensis bv. 1 str. 16M] gi|17985340|gb|AAL54358.1| transcriptional activator, luxr family [Brucella melitensis bv. 1 str. 16M] Length = 235 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 68/191 (35%), Gaps = 23/191 (12%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG----- 117 +P + Y F + P+ + S+ ++ + + P Sbjct: 40 TLPATWVARYSSKNYFAID----PVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHD 95 Query: 118 ----------IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--- 164 IA R G +FT E + + + Sbjct: 96 AEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCG 155 Query: 165 -KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR Sbjct: 156 CKDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTS 215 Query: 224 AIAKAIRFGYI 234 A+A A+ G I Sbjct: 216 AVATALSLGII 226 >gi|119485648|ref|ZP_01619923.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119456973|gb|EAW38100.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 226 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 12/118 (10%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACY----------QVITDFLEL--FKKRSSAARNLTER 177 GY + L + A GA + + F E+ + SA+ LT+R Sbjct: 104 GYCLKGIAPEALILAIRSVAAGASWWDSIATQEIQKTFGQFAEVPEGSEAYSASNPLTKR 163 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L L G +++EIA+ L ++ TV ++ + KL+A +R QA AI+ + Sbjct: 164 EQEILALIASGKSNQEIADILYIAPGTVRVHVHTILKKLNARDRTQAALVAIQKKLVA 221 >gi|289434290|ref|YP_003464162.1| DNA-binding response regulator, LuxR family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170534|emb|CBH27074.1| DNA-binding response regulator, LuxR family [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633930|gb|EFS00643.1| sensory transduction protein LiaR [Listeria seeligeri FSL N1-067] gi|313638502|gb|EFS03673.1| sensory transduction protein LiaR [Listeria seeligeri FSL S4-171] Length = 212 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERE 178 L + Y++ TS +A+ + G +V ++ + +LT RE Sbjct: 94 LEAGASSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRLTAKPEKNLHDDLTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KLD +R QA A + + Sbjct: 154 NEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209 >gi|269836276|ref|YP_003318504.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785539|gb|ACZ37682.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 223 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR------NLTE 176 GY+I L +++ A G ++ LE F + A L+ Sbjct: 98 AGAQGYLIKNIRSAELLDQLRGLARGEAAISRRMAARILEEFARLERQAEILEPDGGLSP 157 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +++EIA +L +S HTV +L + KL +R QA A A+ G I Sbjct: 158 REVEVLELVALRLSNKEIAARLSISEHTVKNHLKNILAKLQLSSRRQAAAYAVAHGLI 215 >gi|229187725|ref|ZP_04314860.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] gi|228595717|gb|EEK53402.1| DNA-binding response regulator [Bacillus cereus BGSC 6E1] Length = 213 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQVGADGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLITYHQQKMKVESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAEALYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|306837362|ref|ZP_07470241.1| regulatory protein LuxR [Brucella sp. NF 2653] gi|306407554|gb|EFM63754.1| regulatory protein LuxR [Brucella sp. NF 2653] Length = 235 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 68/191 (35%), Gaps = 23/191 (12%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG----- 117 +P + Y F + P+ + S+ ++ + + P Sbjct: 40 TLPATWVARYSSKNYFAID----PVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHD 95 Query: 118 ----------IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--- 164 IA R G +FT E + + + Sbjct: 96 AEKHGLGNLFIAVSARNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCG 155 Query: 165 -KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR Sbjct: 156 CKDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTS 215 Query: 224 AIAKAIRFGYI 234 A+A A+ G I Sbjct: 216 AVATALSLGII 226 >gi|315302505|ref|ZP_07873346.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596] gi|313629123|gb|EFR97415.1| sensory transduction protein LiaR [Listeria ivanovii FSL F6-596] Length = 212 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERE 178 L + Y++ TS +A+ + G +V ++ + +LT RE Sbjct: 94 LEAGASSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRLTAKPEKNLHDDLTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KLD +R QA A + + Sbjct: 154 NEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209 >gi|284043079|ref|YP_003393419.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283947300|gb|ADB50044.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 229 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 17/129 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLE----------LFKK 166 L +G+++ + L V + A G +VI F + Sbjct: 93 LRAGASGFLLKDTPAEQLVAGVRVVAAGDALLSPSVTRRVIEQFARPAGSLVGAGSVGAA 152 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R A LTERE L+L G ++ EIAE+L ++ TV ++ +KL +R+QA+ Sbjct: 153 RPPALDELTERELEVLELIACGLSNAEIAERLVVAQTTVKTHVARVLMKLGLRDRVQAVV 212 Query: 227 KAIRFGYIC 235 A G + Sbjct: 213 LAYEAGVVS 221 >gi|239929933|ref|ZP_04686886.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291438267|ref|ZP_06577657.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] gi|291341162|gb|EFE68118.1| two-component system regulator [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL------ELFKKRSSA 170 L +G+++ + LA+ V + A G ++IT+F L +A Sbjct: 95 LRAGASGFLLKDASARQLADGVRVVASGEALLAPSVTRRLITEFSKLSETPRLMPSAQAA 154 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LTERET L L G ++ EIAE+L ++ T+ ++ VKL +R QA A Sbjct: 155 YGDLTERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYE 214 Query: 231 FGYIC 235 + Sbjct: 215 ARLVT 219 >gi|330962290|gb|EGH62550.1| DNA-binding response regulator, LuxR family protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 222 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 7/118 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTER 177 GY++ + + + A G +++ E +SA LT R Sbjct: 98 SAGAVGYLLKDASRDEVIAGLQRVARGEEALNSAVSARLLRRMTERNTSGASAPEALTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L L G+++ EI EKLG++ T A++ KL A +R QA + + G + Sbjct: 158 ERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLVS 215 >gi|330468676|ref|YP_004406419.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811647|gb|AEB45819.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 227 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-------KKRSSAARN 173 L +G+++ L + + A G + L+ F Sbjct: 97 LRAGASGFLLKNVPPEELLAAIRVVAQGDSVVAPSITRRLLDRFAGQLGTTPGEDPRLAQ 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L G + EIAE++ ++ TV ++G KL +R+QA+ A G Sbjct: 157 LTEREREILLLVAQGLANAEIAERVHVAEATVKTHVGRILAKLQLRDRVQAVVLAYESGL 216 Query: 234 IC 235 + Sbjct: 217 VV 218 >gi|302535180|ref|ZP_07287522.1| two component system response regulator [Streptomyces sp. C] gi|302444075|gb|EFL15891.1| two component system response regulator [Streptomyces sp. C] Length = 225 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARN--- 173 L +G+++ L + + A +++ F + ++ N Sbjct: 95 LKAGASGFMLKDVPPAELLAAIRSVHSGDAVVAPSTTRRLLDRFAPMLPTTAAEPENKEI 154 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 ERLTDREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|126435625|ref|YP_001071316.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|126235425|gb|ABN98825.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 218 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS--AARNLTE 176 GY++ ++ L+ V A G V+ ++ + ++ + +A LTE Sbjct: 100 AGATGYLVKSASKAELSAAVRATADGRAVFTPGLAGLVLGEYRRIAQRPDTGDSAPTLTE 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+ G T+++IA +L LS TV ++ + KL NR++ AI G Sbjct: 160 RETEVLRHVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 216 >gi|302553186|ref|ZP_07305528.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470804|gb|EFL33897.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 223 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARN--- 173 L +G+++ L + + A +++ F + ++ ++ Sbjct: 95 LKAGASGFMLKDVPPGELLTAIRSVHSGDAVVAPSTTRRLLDRFAPMLPGTATQPQHQEL 154 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 ERLTDREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|225875065|ref|YP_002756524.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] gi|225792729|gb|ACO32819.1| two-component response regulator [Acidobacterium capsulatum ATCC 51196] Length = 213 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY+I + + E I H + + +R + LT RET L++ Sbjct: 103 AGARGYLIKDTTQEEIL-EAIAAVHAGSLHLPRHIAQRISERI-GRQELTRRETEILEML 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EI G+S +T ++ S KL+ +R +A AI G I Sbjct: 161 AKGLTNKEIGRVFGISENTARNHVNSIIQKLEVSDRTEAATTAILRGII 209 >gi|222066056|emb|CAX21483.1| ppoR luxR family protein [Pseudomonas putida] Length = 235 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 32/188 (17%), Positives = 63/188 (33%), Gaps = 17/188 (9%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 + P IE Y D +S +P++W + + + + Sbjct: 53 YLYSNYPKEWIERYQRDEFYKQDAAANASHSSTMPVLWNDD----LYREAPKFR-QAACQ 107 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK----- 166 G + H + + + + G+ + + + Sbjct: 108 YGLCHGWTQSLHDLQHNESQISVARPTGTIGITELYDKAGSVQWLCHTLHAVLGEYHLNA 167 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +++RE L+ + G T+ ++A L LS TVN ++ S K A N+ A+A Sbjct: 168 LCPPQPKMSKRELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTSAANKAGAVA 227 Query: 227 KAIRFGYI 234 A G+I Sbjct: 228 IAALRGWI 235 >gi|329938110|ref|ZP_08287561.1| two-component system regulator [Streptomyces griseoaurantiacus M045] gi|329302599|gb|EGG46489.1| two-component system regulator [Streptomyces griseoaurantiacus M045] Length = 223 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARN--- 173 L +G+++ S L V A +++ + R A Sbjct: 96 LRAGASGFLLKDSGPERLLAAVTAVRGGDALFAPSVTRRLVEAYAGRAGHRPRDAEPPPE 155 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L G G ++ EIA++L +S TV +L KLD +R QA+ A Sbjct: 156 LGALTTREVEVLGLIGRGLSNLEIADRLYISEATVKTHLNRTMTKLDLDSRAQAVVVAYE 215 Query: 231 FGYIC 235 G + Sbjct: 216 TGLVT 220 >gi|311032412|ref|ZP_07710502.1| two-component response regulator-like protein [Bacillus sp. m3-13] Length = 210 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 8/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTERE 178 GY + E L + G V++ F + F ++ LT+RE Sbjct: 96 AGATGYQLKDVEPDQLIESIRAVHRGESQLHPKVTSHVMSHFTKGFGS-TNLHEELTKRE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G +++EIA L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 LEVLAEIAKGKSNKEIASSLFITEKTVKTHVSNILAKLEVADRTQAALYAVKHGI 209 >gi|313624283|gb|EFR94330.1| sensory transduction protein LiaR [Listeria innocua FSL J1-023] Length = 212 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERE 178 L + Y++ TS +A+ + G +V ++ + +LT RE Sbjct: 94 LEAGASSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRLTAKPEKKLHDDLTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KLD +R QA A + + Sbjct: 154 NEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209 >gi|289550436|ref|YP_003471340.1| Two-component response regulator-like protein [Staphylococcus lugdunensis HKU09-01] gi|289179968|gb|ADC87213.1| Two-component response regulator-like protein [Staphylococcus lugdunensis HKU09-01] Length = 207 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + G + +E K+ L++RE L+ Sbjct: 98 GADGYEMKDVEPAKLIETIRRVLAGERIIHPEAKTVMEAVAKKPHYTNKLSKREIDVLRE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EIAE L +S T+ ++ KL +R QA A++ I Sbjct: 158 MVKGKTNREIAETLFVSEKTIKTHVSHIFNKLQVSDRTQAAIYAMQNNLI 207 >gi|271966006|ref|YP_003340202.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509181|gb|ACZ87459.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 201 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + H G+++ S L + A G +V+ L F + LTERE+ L+ Sbjct: 94 MSSHVAGFMVKDSRPKELIEAIRTVAGGG--RVVDPQLA-FAALNVQGSPLTERESEVLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G EIA ++GLS TV YL S+ KL+A NR+ AI A G+I Sbjct: 151 LTASGAEPPEIAARIGLSYGTVRNYLASSVTKLNARNRVDAIRIATEAGWI 201 >gi|116872424|ref|YP_849205.1| LuxR family DNA-binding response regulator [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741302|emb|CAK20424.1| DNA-binding response regulator; LuxR family [Listeria welshimeri serovar 6b str. SLCC5334] Length = 212 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERE 178 L + Y++ TS +A+ + G +V ++ + +LT RE Sbjct: 94 LEAGASSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRLTAKPEKNLHDDLTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KLD +R QA A + + Sbjct: 154 NEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209 >gi|16800090|ref|NP_470358.1| hypothetical protein lin1021 [Listeria innocua Clip11262] gi|16413480|emb|CAC96252.1| lin1021 [Listeria innocua Clip11262] gi|313609539|gb|EFR85084.1| sensory transduction protein LiaR [Listeria monocytogenes FSL F2-208] gi|313619559|gb|EFR91226.1| sensory transduction protein LiaR [Listeria innocua FSL S4-378] Length = 212 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERE 178 L + Y++ TS +A+ + G +V ++ + +LT RE Sbjct: 94 LEAGASSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRLTAKPEKNLHDDLTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KLD +R QA A + + Sbjct: 154 NEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209 >gi|16803062|ref|NP_464547.1| hypothetical protein lmo1022 [Listeria monocytogenes EGD-e] gi|46907254|ref|YP_013643.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47096354|ref|ZP_00233950.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|217964878|ref|YP_002350556.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|224500732|ref|ZP_03669081.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes Finland 1988] gi|224502663|ref|ZP_03670970.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes FSL R2-561] gi|226223640|ref|YP_002757747.1| two-component response regulator [Listeria monocytogenes Clip81459] gi|254823705|ref|ZP_05228706.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|254832231|ref|ZP_05236886.1| two-component response regulator [Listeria monocytogenes 10403S] gi|254852518|ref|ZP_05241866.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|254898804|ref|ZP_05258728.1| two-component response regulator [Listeria monocytogenes J0161] gi|254911707|ref|ZP_05261719.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|254931406|ref|ZP_05264765.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|254936033|ref|ZP_05267730.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|255520598|ref|ZP_05387835.1| two-component response regulator [Listeria monocytogenes FSL J1-175] gi|290893828|ref|ZP_06556807.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|300764232|ref|ZP_07074227.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|315281752|ref|ZP_07870312.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120] gi|16410424|emb|CAC99100.1| lmo1022 [Listeria monocytogenes EGD-e] gi|46880521|gb|AAT03820.1| DNA-binding response regulator [Listeria monocytogenes serotype 4b str. F2365] gi|47015312|gb|EAL06249.1| DNA-binding response regulator [Listeria monocytogenes str. 1/2a F6854] gi|217334148|gb|ACK39942.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Listeria monocytogenes HCC23] gi|225876102|emb|CAS04808.1| Putative two-component response regulator [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605826|gb|EEW18434.1| DNA-binding response regulator [Listeria monocytogenes FSL R2-503] gi|258608621|gb|EEW21229.1| DNA-binding response regulator [Listeria monocytogenes F6900] gi|290556655|gb|EFD90190.1| DNA-binding response regulator [Listeria monocytogenes FSL J2-071] gi|293582956|gb|EFF94988.1| DNA-binding response regulator [Listeria monocytogenes HPB2262] gi|293589656|gb|EFF97990.1| DNA-binding response regulator [Listeria monocytogenes J2818] gi|293592927|gb|EFG00688.1| DNA-binding response regulator [Listeria monocytogenes FSL J1-194] gi|300515222|gb|EFK42274.1| DNA-binding response regulator [Listeria monocytogenes FSL N1-017] gi|307570563|emb|CAR83742.1| DNA-binding response regulator, LuxR family [Listeria monocytogenes L99] gi|313614594|gb|EFR88178.1| sensory transduction protein LiaR [Listeria marthii FSL S4-120] gi|328466914|gb|EGF38023.1| two-component response regulator [Listeria monocytogenes 1816] gi|328475371|gb|EGF46144.1| two-component response regulator [Listeria monocytogenes 220] gi|332311431|gb|EGJ24526.1| Transcriptional regulatory protein [Listeria monocytogenes str. Scott A] Length = 212 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERE 178 L + Y++ TS +A+ + G +V ++ + +LT RE Sbjct: 94 LEAGASSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRLTAKPEKNLHDDLTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KLD +R QA A + + Sbjct: 154 NEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 209 >gi|325914503|ref|ZP_08176847.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325539273|gb|EGD10925.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 200 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + + G +VI L + A L+ERE + L+ Sbjct: 94 LDAGVAGYLLKDAPAEQLVDALRQVQRGG--RVIDPQLAI--DAWVEADPLSERERTVLR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG+G ++ EIA++L LS TV YL KL NRI+A A + G++ Sbjct: 150 LAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200 >gi|118470646|ref|YP_887553.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118171933|gb|ABK72829.1| DNA-binding response regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 219 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 54/118 (45%), Gaps = 10/118 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRS---SAARNLT 175 GY++ ++ LA+ V A G V+ ++ + ++ + A LT Sbjct: 100 AGATGYLVKSASRTELADAVRATAEGRAVFTPGLAGLVLGEYRRIAQQPAQEGPATPTLT 159 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ERET L+ G T+++IA +L LS TV ++ + KL NR++ AI G Sbjct: 160 ERETEILRYVAKGLTAKQIAARLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217 >gi|271961678|ref|YP_003335874.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504853|gb|ACZ83131.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 207 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCL 182 L GY++ S + V A G L + R+ A L+ RE + L Sbjct: 95 LTAGAIGYLLKDSPREEVFRAVRAAALGETVLSPAVAARLLNRVRTPAPAELSGRERTVL 154 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T++E A L +S TV +L KL +R A+A A G + Sbjct: 155 ALVARGSTNKEAAAALFISETTVKTHLAHIYTKLGVSDRASAVAVAYSRGLL 206 >gi|254522679|ref|ZP_05134734.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219720270|gb|EED38795.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 201 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 51/120 (42%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKK--RSSAARNL 174 L GY++ L + A G ++++ + + L Sbjct: 82 LKAGAKGYLLKDVTLAQLVGAIRTVADGGSLVQPAVTQRLLSGLEHMRNEFVSLDRPDPL 141 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RET L+L G++++EIA LG++ T+ ++ + KL +R +A+ KA + Sbjct: 142 TDRETEILRLMASGFSNKEIANSLGVAEGTIKNHVSNILSKLGVRDRTRAVLKAFELQLV 201 >gi|289425149|ref|ZP_06426926.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289426574|ref|ZP_06428314.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295130635|ref|YP_003581298.1| putative Hemoglobin-dependent two component system response regulator HrrA [Propionibacterium acnes SK137] gi|289154127|gb|EFD02815.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289160218|gb|EFD08382.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291377220|gb|ADE01075.1| putative Hemoglobin-dependent two component system response regulator HrrA [Propionibacterium acnes SK137] gi|313764411|gb|EFS35775.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313772207|gb|EFS38173.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313792097|gb|EFS40198.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313801951|gb|EFS43185.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313807563|gb|EFS46050.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313810072|gb|EFS47793.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313812898|gb|EFS50612.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313815948|gb|EFS53662.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818604|gb|EFS56318.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313825246|gb|EFS62960.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313827534|gb|EFS65248.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313830402|gb|EFS68116.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313833772|gb|EFS71486.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|313838777|gb|EFS76491.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314915403|gb|EFS79234.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918316|gb|EFS82147.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314920126|gb|EFS83957.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314931648|gb|EFS95479.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314955704|gb|EFT00106.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314958103|gb|EFT02206.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314959957|gb|EFT04059.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314962754|gb|EFT06854.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314967878|gb|EFT11977.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314973404|gb|EFT17500.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314976083|gb|EFT20178.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314978528|gb|EFT22622.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314983897|gb|EFT27989.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314988079|gb|EFT32170.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314989886|gb|EFT33977.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315077971|gb|EFT50022.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315080596|gb|EFT52572.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315084266|gb|EFT56242.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315085610|gb|EFT57586.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315088338|gb|EFT60314.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315095949|gb|EFT67925.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315098580|gb|EFT70556.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101419|gb|EFT73395.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315108635|gb|EFT80611.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327326231|gb|EGE68021.1| DNA-binding response regulator VraR [Propionibacterium acnes HL096PA2] gi|327331894|gb|EGE73631.1| DNA-binding response regulator VraR [Propionibacterium acnes HL096PA3] gi|327443096|gb|EGE89750.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327445878|gb|EGE92532.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448140|gb|EGE94794.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327450738|gb|EGE97392.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327453185|gb|EGE99839.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|327453920|gb|EGF00575.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328753426|gb|EGF67042.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328754157|gb|EGF67773.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328754593|gb|EGF68209.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328760809|gb|EGF74375.1| DNA-binding response regulator VraR [Propionibacterium acnes HL099PA1] gi|332675478|gb|AEE72294.1| nitrate/nitrite response regulator protein NarP [Propionibacterium acnes 266] Length = 210 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S +LT RE L+ + Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMARMRSPRTSLTARELDVLEAS 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IAE L +S TV +L KL +R A+AKA G+I Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGFI 209 >gi|170078560|ref|YP_001735199.1| two-component response regulator [Synechococcus sp. PCC 7002] gi|169886229|gb|ACA99942.1| two-component response regulator [Synechococcus sp. PCC 7002] Length = 251 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE LQL DG ++ EIAE L ++V TV ++ + KL A +R QA +A+R G Sbjct: 189 PLTDRELEVLQLIVDGCSNSEIAEHLFITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 248 Query: 233 YI 234 + Sbjct: 249 LV 250 >gi|300788854|ref|YP_003769145.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299798368|gb|ADJ48743.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 210 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCL 182 L +G ++ + L E+ G + ++ + AR+ LT RE L Sbjct: 99 LESGAHGCLLKDAAGAQLVTELRRVLRGERVVDPRILPDAGQRSDALARSGLTRREYEVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +LA G T+ EIAE GL+ +TV YL SA KL A NR++AI KA G + Sbjct: 159 RLAAQGQTNPEIAESTGLARNTVKTYLQSALHKLGARNRVEAIGKASEAGLL 210 >gi|94970774|ref|YP_592822.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94552824|gb|ABF42748.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 211 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L Y++ + + VI H + + + +LT RE L Sbjct: 101 LRAGAAAYILKSMPMNEML-AVIRSVHAGARHIPQEVASRLAENI-GEESLTSRELEVLH 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L DG+ +++IA++L +S TVN ++ + K+ A +R A+ A+R G + Sbjct: 159 LIRDGHRNKQIADELSISETTVNFHIKNIVGKMGANDRTHAVTIAVRRGLL 209 >gi|158318087|ref|YP_001510595.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113492|gb|ABW15689.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 244 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-------LTE 176 L NG+++ + + V + KR + + LT+ Sbjct: 122 LRSGANGFLLKRARPAEIVQAVRTIVSSESLLFPEAIRYMAGKRPNREAHETMRRAVLTD 181 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G ++ EIA +L L TV +++ S KL A +R QA+ A G++ Sbjct: 182 READVLRLISEGLSNNEIANRLYLGAQTVKSHVSSVLAKLGARDRTQAVIIAYESGFV 239 >gi|47093968|ref|ZP_00231703.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|258611471|ref|ZP_05711518.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] gi|47017667|gb|EAL08465.1| DNA-binding response regulator [Listeria monocytogenes str. 4b H7858] gi|258600349|gb|EEW13674.1| DNA-binding response regulator [Listeria monocytogenes FSL N3-165] Length = 171 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERE 178 L + Y++ TS +A+ + G +V ++ + +LT RE Sbjct: 53 LEAGASSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRLTAKPEKNLHDDLTNRE 112 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KLD +R QA A + + Sbjct: 113 NEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 168 >gi|315500523|ref|YP_004089325.1| two component transcriptional regulator, LuxR family [Asticcacaulis excentricus CB 48] gi|315418535|gb|ADU15174.1| two component transcriptional regulator, LuxR family [Asticcacaulis excentricus CB 48] Length = 218 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 6/114 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTER 177 L GYV+ + L ++ A G E ++ +A +LT R Sbjct: 98 LAAGAAGYVLKDTAIDDLQAAIVRVAQGQTALPLDLVSAAMRAPEPVERDPTALSSLTGR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E + L +G T++EI LG+S TV A++ KL +R QA A R Sbjct: 158 EREIVHLIAEGMTNKEIGRSLGISPATVKAHVERLIAKLGVTDRTQAAVLASRH 211 >gi|290961496|ref|YP_003492678.1| two component response regulator [Streptomyces scabiei 87.22] gi|260651022|emb|CBG74140.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 213 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 7/116 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLTER 177 L GYV + LA + H + + + + A +LTER Sbjct: 97 LRAGAAGYVYKDVDPDALAGAIRSV-HAGHILLQPEVADALLSQEEANSGQGRGGSLTER 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 156 EKEVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGM 211 >gi|228920976|ref|ZP_04084313.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838670|gb|EEM83974.1| DNA-binding response regulator [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 213 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V + + K+ + LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAVYQGNANFHPKVTPALIGRSAVKKEIENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EQEVLREIAKGRSNKEIAAELYITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|223934791|ref|ZP_03626711.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896746|gb|EEF63187.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 211 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 7/115 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTE 176 L +GY++ L + + G +V+ + L+ Sbjct: 97 LAAGASGYLLKRMPPSKLLDAIREVNEGGSPMSAPIARKVVESLQATRPPKPDDTAELSP 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L+ +G ++IA+KLG+S+HTV Y+ KL + QA+A+ R Sbjct: 157 REREVLEGLAEGCAYKQIADKLGVSIHTVRNYIRRIYEKLHVRSSSQAVARYYRH 211 >gi|167463570|ref|ZP_02328659.1| hypothetical protein Plarl_13624 [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381266|ref|ZP_08055269.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154842|gb|EFX47113.1| two-component response regulator-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 218 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLE-LFKKRSSAARNLT 175 L +GYV+ +S L + H A +VI +L+ + A + LT Sbjct: 96 LKSGASGYVLKSSPGTELIQAIRQVYQGQAYLHHAAAKKVIEGYLQSASHDHTDAFQQLT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L L GYT++E+A+ L +S TV + + KL+ R I A++ G + Sbjct: 156 DREKEILSLVAKGYTNKEVADLLSISAKTVENHKANIMDKLNLNTRRDLIRFAVKRGLL 214 >gi|330466893|ref|YP_004404636.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809864|gb|AEB44036.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] Length = 238 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR----------SSA 170 L +G+++ L + + A G ++ + F + +A Sbjct: 111 LRAGASGFLLKNGTPEALIEAIRVVARGDGLLAPEITRRVIATFARPGGPSTGGTDPQAA 170 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 R+LT RE L L G ++ EIA L L TV +++ KL+ +R+QA+ A Sbjct: 171 LRDLTPREREVLVLVAGGASNAEIATALHLGEATVKSHVSRVLAKLELRDRVQAVVFAYE 230 Query: 231 FGYI 234 G + Sbjct: 231 QGVV 234 >gi|304385722|ref|ZP_07368066.1| DNA-binding response regulator [Pediococcus acidilactici DSM 20284] gi|304328226|gb|EFL95448.1| DNA-binding response regulator [Pediococcus acidilactici DSM 20284] Length = 201 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 Y++ S L + G ++I D + S+ LT+RET L++A Sbjct: 96 AQVAAYLLKDSPSEELIGAINQVMTG---KIIYDPALVQSVLSTEQSPLTKRETEVLKVA 152 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++EIA++L LS T+ YL + KL NR++A+ A +I Sbjct: 153 ASGMPTKEIAQQLFLSEGTIRNYLSAIFSKLGVRNRLEAVELAQNNRWI 201 >gi|298247435|ref|ZP_06971240.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550094|gb|EFH83960.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 234 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----------RSSAAR 172 L GY++ + + + A G L + RSS Sbjct: 111 LRAGACGYLLKDTSSETMFQAIRSAARGETLLQPGVVARLLSRASQERRPSLGTRSSGEG 170 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+ G S+EIA +LG+S+ TV A+L S KL +R A+A A+ G Sbjct: 171 ELSERELEVLRKVASGERSKEIAAQLGISLRTVGAHLTSIYTKLGVDSRTSAVAVALERG 230 Query: 233 YIC 235 + Sbjct: 231 LLS 233 >gi|302550880|ref|ZP_07303222.1| two component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468498|gb|EFL31591.1| two component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 228 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAAR---- 172 L +G++ SE L + I A G +I+ FL + R Sbjct: 97 LRAGASGFLGKGSEPEELLTAIRIAAGGQALLSPAATTGLISRFLAQQDPDDAGDRDPAR 156 Query: 173 -----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT RE L L G++++EIAE+L +S TV ++ A KL A +R Q + Sbjct: 157 GERLASLTGREREVLVLVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVT 216 Query: 228 AIRFGYI 234 A G + Sbjct: 217 AYESGLV 223 >gi|225025240|ref|ZP_03714432.1| hypothetical protein EIKCOROL_02137 [Eikenella corrodens ATCC 23834] gi|224941998|gb|EEG23207.1| hypothetical protein EIKCOROL_02137 [Eikenella corrodens ATCC 23834] Length = 215 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 3/113 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETS 180 L GY++ ++ L + G ++ + + S+ +LT+RE Sbjct: 98 LELGARGYILKNADTDFLVEAIRQAVAGQQTVSPEMNNAGQSIPPEHSAILDSLTQRERD 157 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ G +++ IA ++ LS +TV A++ + KL+ NR++A A G Sbjct: 158 VLRYVAGGISNKMIARRMFLSENTVKAHMQNIFRKLNIDNRVRAAVYARELGL 210 >gi|326939967|gb|AEA15863.1| two-component response regulator yhcZ [Bacillus thuringiensis serovar chinensis CT-43] Length = 213 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V + + K+ + LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPALMGRTAVKKEIENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|159897633|ref|YP_001543880.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890672|gb|ABX03752.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 218 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 43/113 (38%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL-ELFKKRSSAARNLTERETSC 181 Y++ L + G V + + EL R S LTERE Sbjct: 99 AGALSYLLKDVGPDALVAAIRAARRGEATLHPMVASRLMTELTSSRRSPLDTLTEREREV 158 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIAE L + TV ++ + KL +R QA A+R + Sbjct: 159 LTCIARGMSNAEIAEHLVIGERTVKTHVSNILSKLHLQDRTQAAIMALRERLV 211 >gi|328883286|emb|CCA56525.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 225 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARN--- 173 L +G+++ L + + A +++ F + + Sbjct: 95 LKAGASGFMLKDVPPAELLGAIRSVHSGDAVVAPSTTRRLLDRFSPMLPSSGKEPEHKEL 154 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 GRLTDREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYES 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|326776281|ref|ZP_08235546.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326656614|gb|EGE41460.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 222 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLE--LFKKRSSAARNL 174 L +G+++ + F L + V + A G ++I +F + + L Sbjct: 96 LTAGASGFLLKDATFPELLHAVRVVAGGHALLAPEITGRLIAEFTRQRVSAPPPRSVDGL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G ++ +IA++L ++ HTV ++ K+ +R QA+ A G + Sbjct: 156 TAREVEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYERGLV 215 Query: 235 C 235 Sbjct: 216 A 216 >gi|254384266|ref|ZP_04999609.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194343154|gb|EDX24120.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 216 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L +G+++ S + + V + A G A + ++ + LTE Sbjct: 96 LRAGADGFLLKRSRPSEIVHAVRLVAEGETLLFPAAVRALAAEYGNRGARAVLERAALTE 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE + L+L G T+ EIA +L + TV +++ + KL A +R QA+ A G++ Sbjct: 156 REEAVLRLMARGLTNVEIASELIVGTETVKSHVSAILAKLGARDRTQAVIMAYESGFVS 214 >gi|270308516|ref|YP_003330574.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270154408|gb|ACZ62246.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 225 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 143 NEVIIEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 NE ++ + QV+ F + L K S+ LT RE L L +G T+++IA L Sbjct: 129 NESLMSSPNLAKQVLAQFQDVSMLGKDASNFVTPLTNREKQILTLIANGNTNKQIANSLE 188 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S T+ ++ + KL+A +R A+ AIR G I Sbjct: 189 ISEQTIKNHVSAILRKLNANDRAHAVVVAIRCGLI 223 >gi|229143361|ref|ZP_04271792.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228640168|gb|EEK96567.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] Length = 213 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 94 LQAGADGYLLKDSSSEQVVAAIRMLYRGDSVIHPRMTKKLITYHQQKMKVESNENELTER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIA+ L +S TV ++ KL+ +R QA+ A+R + Sbjct: 154 EKEILFELVKGLSNKEIAKVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 210 >gi|254423092|ref|ZP_05036810.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190581|gb|EDX85545.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 212 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L V G + ++L ++ S LT RE L+ Sbjct: 99 LQAGARGYLLKDATSQELTQAVRQVYQGKRFIPADVAMKLAERIES--DELTAREIDVLE 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G ++ +++E L +S TV ++ + KL+A +R QA+ A+ G + Sbjct: 157 MMVQGSSTAKLSEALHISEGTVKFHVNNILQKLNAHDRTQAVVTALHRGIV 207 >gi|70731182|ref|YP_260923.1| LuxR family DNA-binding response regulator [Pseudomonas fluorescens Pf-5] gi|68345481|gb|AAY93087.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 222 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 + GY++ + + + + A G +++ E ++ A+ LT Sbjct: 97 MAAGAVGYLLKDASREEVLDALQRVARGEEALNSAVSARLLRRMSERGNGQAPQAQALTA 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L L G+++ EI EKLG++ T A++ KL A +R QA + + G + Sbjct: 157 RERQVLGLVAGGFSNREIGEKLGITTGTAKAHVERVIGKLGAADRTQAAVRGMALGLVA 215 >gi|75761109|ref|ZP_00741104.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491401|gb|EAO54622.1| Two-component response regulator yhcZ [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 219 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V + + K+ + LT+R Sbjct: 101 LEAGADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPALMGRSAVKKEIENPFSMLTKR 160 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 161 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 215 >gi|239944389|ref|ZP_04696326.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990844|ref|ZP_04711508.1| two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447858|ref|ZP_06587248.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291350805|gb|EFE77709.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 217 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----RSSAARNLTERETS 180 GY++ + L V A G L + A L+ RE Sbjct: 103 AGATGYLLKDAPRDELFAAVRAAADGRSTLSPAVASRLMTRVRTPAADPAGTTLSARERE 162 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T+ EIA +L +S TV +L KL A +R A+A G + Sbjct: 163 VLVLVARGTTNREIAAELFISEATVKTHLTHVFAKLGAKDRAAAVAVGYDRGIL 216 >gi|307151536|ref|YP_003886920.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306981764|gb|ADN13645.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 232 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 43/76 (56%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + LE +LTERE LQL DGY++ IA+KL ++V TV ++ + KL A Sbjct: 156 ELLEPESNVRGETYSLTERELEVLQLIVDGYSNAAIADKLFITVGTVKTHVRNILNKLCA 215 Query: 219 VNRIQAIAKAIRFGYI 234 +R QA +A+R G + Sbjct: 216 DDRTQAAVRALRAGLV 231 >gi|254362590|ref|ZP_04978686.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica PHL213] gi|261491662|ref|ZP_05988244.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494219|ref|ZP_05990719.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica serotype A2 str. OVINE] gi|153094197|gb|EDN75082.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica PHL213] gi|261310122|gb|EEY11325.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312677|gb|EEY13798.1| nitrate/nitrite response regulator NarP [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 209 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 48/105 (45%), Gaps = 2/105 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 + +GY++ ++ L + + A G + + L + + LT+RE Sbjct: 97 MDAGVDGYLLKDTDTPELLDNIRKAAAGEVVLSETVRQHLLNRQPENDPLSCLTDRELDV 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LQ G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 157 LQWLATGMSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|147669585|ref|YP_001214403.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|146270533|gb|ABQ17525.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] Length = 232 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS--AARNL 174 L YV+ S L V G Y + I ++E + +S L Sbjct: 94 LRAGAWAYVLKDSTSEELVRAVREAMQGHRYLSPPLSEKAIEAYMEKTAEATSLDPYETL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L GYT EIAEKL +S TV + + KLD N+ Q + A++ G I Sbjct: 154 TIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213 >gi|116494716|ref|YP_806450.1| DNA-binding response regulator [Lactobacillus casei ATCC 334] gi|116104866|gb|ABJ70008.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei ATCC 334] Length = 202 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 9/113 (7%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSC 181 NGY++ S L + + G +++T+ + ++ + LT+RE + Sbjct: 95 AAQVNGYLLKDSPSDDLIDVIRKVMTGQTVYAPELVTNMV------TAESNPLTDRELAV 148 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +S++IA L LS TV YL + KL NRI+A+ A + ++ Sbjct: 149 LAEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQMAKKNKWL 201 >gi|302867410|ref|YP_003836047.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315506180|ref|YP_004085067.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302570269|gb|ADL46471.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412799|gb|ADU10916.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 227 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK--------RSSAAR 172 L G++ L + A G +++ L+ F + + A Sbjct: 102 LRAGAGGFLTKDVPAEDLVAAIRTVAAGGAVMSPRILRRLLDRFAQVLPDPAAAPARALE 161 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G ++ EIA L +S TV ++G KL +R+QA+ A G Sbjct: 162 PLTDREREVLTHMARGLSNAEIARLLSVSETTVKTHVGHVLTKLRLRDRVQAVVLAYETG 221 Query: 233 YI 234 + Sbjct: 222 LV 223 >gi|254994407|ref|ZP_05276597.1| two-component response regulator [Listeria monocytogenes FSL J2-064] Length = 187 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERE 178 L + Y++ TS +A+ + G +V ++ + +LT RE Sbjct: 69 LEAGASSYMLKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRLTAKPEKNLHDDLTNRE 128 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EIA++L +++ TV ++ + KLD +R QA A + + Sbjct: 129 NEILLLIAEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLV 184 >gi|191638216|ref|YP_001987382.1| Response regulator [Lactobacillus casei BL23] gi|239631678|ref|ZP_04674709.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066277|ref|YP_003788300.1| CitB family DNA-binding response regulator [Lactobacillus casei str. Zhang] gi|190712518|emb|CAQ66524.1| Response regulator [Lactobacillus casei BL23] gi|239526143|gb|EEQ65144.1| DNA-binding response regulator [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438684|gb|ADK18450.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus casei str. Zhang] gi|327382247|gb|AEA53723.1| Two component transcriptional regulator, LuxR family [Lactobacillus casei LC2W] gi|327385444|gb|AEA56918.1| Two component transcriptional regulator, LuxR family [Lactobacillus casei BD-II] Length = 202 Score = 100 bits (250), Expect = 1e-19, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 9/113 (7%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSC 181 NGY++ S L + + G +++T+ + ++ + LT+RE + Sbjct: 95 AAQVNGYLLKDSPSDDLIDVIRKVMTGQTVYAPELVTNMV------TAESNPLTDRELAV 148 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +S++IA L LS TV YL + KL NRI+A+ A + ++ Sbjct: 149 LAEVASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAVQMAKKNKWL 201 >gi|298245147|ref|ZP_06968953.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552628|gb|EFH86493.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 5/109 (4%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLA 185 V S+ L N+ ++ +V+ F EL ++ L+ RE L Sbjct: 116 AVRKVSQGEYLINDDVLSKPQLASRVLRSFHELTVEKEEGTPKDSYSPLSSREVEILDYI 175 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA+ L +S TV ++ S KL +R A+ A+R G+I Sbjct: 176 ARGNSNKEIAKSLKISDQTVKNHITSILKKLSVSDRTAAVVHALRHGWI 224 >gi|291287188|ref|YP_003504004.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] gi|290884348|gb|ADD68048.1| transcriptional regulator, LuxR family [Denitrovibrio acetiphilus DSM 12809] Length = 245 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 44/87 (50%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A ++T+++ + + L+ RE S L G TS E+A+ L ++ +TVN + Sbjct: 159 ACYLHAHLLTNYVRILSVSNENIIKLSGREKSVLTWLKYGKTSWEVAKILNITENTVNFH 218 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYIC 235 + + KL+A NR A+A AI I Sbjct: 219 IKNIKNKLNATNRQHAVAIAIAKSIIS 245 >gi|329929253|ref|ZP_08283011.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328936739|gb|EGG33180.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 220 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 16/125 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLEL---------FKKRSS 169 GY++ E L + G A ++T + ++ Sbjct: 96 AGARGYLLKDIEPEELVAGIRRVFQGQVELHPDAAGLLMTHVTSPAGEDEANGSSHQEAA 155 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL G + EI+E L ++ TV ++ KL +R QA A+ Sbjct: 156 QLNKLTRREQEVLQLIASGMNNREISEALYITEKTVKTHVSHLLDKLGVADRTQAAIYAL 215 Query: 230 RFGYI 234 + G + Sbjct: 216 KHGIV 220 >gi|315647611|ref|ZP_07900713.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315277050|gb|EFU40391.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 218 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFT---SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTER 177 L GY++ + + ++ ++ L+ F ++ LT R Sbjct: 98 LKRGAQGYLLKNLNPESWHEYLKAIAVDEAPMSRELAFRILKEFSQQEKPDPGNSPLTAR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L +G ++ +I+ L +S +TV +L + KL NR+Q A G+ Sbjct: 158 EREILGRVAEGLSNRDISVALCISENTVKNHLKNILQKLHLENRVQLTRYAFEQGW 213 >gi|259649548|dbj|BAI41710.1| two-component response regulator [Lactobacillus rhamnosus GG] Length = 203 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 NGY++ S L + G + ++ + LTERE + L Sbjct: 96 AAQVNGYLLKDSPSDDLIAVIRKVMTGQTVYAPELVANMV---TAESNPLTERELAVLGE 152 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G +S++IA L LS TV YL + KL NRI+AI A R ++ Sbjct: 153 VASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRNKWLA 203 >gi|237846558|gb|ACR22887.1| SplR [Serratia plymuthica] Length = 249 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 67/223 (30%), Gaps = 25/223 (11%) Query: 37 TINSALDFPRRQQLICELHNYD--LDSGDIPNILIETY-------GDDFLFHFNSGLLPI 87 S+L P + N L P+ ++ Y D + P Sbjct: 21 RKLSSLGSPEYAYTVVRKKNPSDVLIISSYPDEWVDLYRANNFQLTDPVILTAFKRTSPF 80 Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--FTSEFLMLANEV 145 W + + L G F + + + S + Sbjct: 81 AWDE-NITLMSDLKFTKIFSLSKQYNTINGFTFVLHDHMNNLALLSVIIASNGQEELEKR 139 Query: 146 IIEAHGACYQVITDFLELFKKRSSAARN-------------LTERETSCLQLAGDGYTSE 192 + GA ++ D E + + AA + T RE L A G T Sbjct: 140 LSSERGAMQMLLIDINEQMYRLAGAASSSNQKYHTDADKPIFTPRENEVLYWASMGKTYG 199 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 EIA G+SV TV ++G+ VKL N QAI + I Sbjct: 200 EIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELIT 242 >gi|225182003|ref|ZP_03735435.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225167288|gb|EEG76107.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 217 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 6/114 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK---RSSAARNLTERETS 180 + Y++ E L + + G ++ F++ R+ L+ RET Sbjct: 102 GVSAYMLKDIETDCLVDAIRAVFRGETVYHPRISEKMCGEFQRLALRNVHDEPLSRRETD 161 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G +++EI ++L +S TV ++ + K+ +R QA A++ + Sbjct: 162 VLTLIARGKSNKEIGDELYISEKTVKNHITNIFRKIQVTDRTQAALYAVKNRIV 215 >gi|149180154|ref|ZP_01858659.1| DNA-binding response regulator [Bacillus sp. SG-1] gi|148852346|gb|EDL66491.1| DNA-binding response regulator [Bacillus sp. SG-1] Length = 216 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 51/114 (44%), Gaps = 6/114 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTERETS 180 +GY++ + + V G + + F + +++ +LTERE Sbjct: 97 GADGYLLKDAPSEQVVEAVRTVFSGESVIHPSLTRKLLTFHQQNQRQDRDDNSLTERERE 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G +++EI ++L +S TV ++ + KL+ +R Q + A++ + Sbjct: 157 VLGCLVEGLSNKEIGKRLYVSDKTVKIHVSNIFKKLNVKSRSQVVIYAVQNKLV 210 >gi|258508232|ref|YP_003170983.1| LuxR family two-component response regulator [Lactobacillus rhamnosus GG] gi|257148159|emb|CAR87132.1| Two-component response regulator, LuxR family [Lactobacillus rhamnosus GG] Length = 202 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 NGY++ S L + G + ++ + LTERE + L Sbjct: 95 AAQVNGYLLKDSPSDDLIAVIRKVMTGQTVYAPELVANMV---TAESNPLTERELAVLGE 151 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G +S++IA L LS TV YL + KL NRI+AI A R ++ Sbjct: 152 VASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRNKWLA 202 >gi|328880752|emb|CCA53991.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 227 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NLTE 176 +G+++ +E L V G ++I +F K +AA LTE Sbjct: 104 AGASGFLVKDTEPEELLRAVRAVVDGDALLSPGVTRRLIEEFAARSKAPGAAASLGALTE 163 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + L G G ++ EIA +L +S T ++ A VKL A +R Q + A G + Sbjct: 164 REREVMALVGIGLSNGEIARRLVVSPLTAKTHVSRAMVKLGARDRAQLVVLAYESGLV 221 >gi|313820373|gb|EFS58087.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313822823|gb|EFS60537.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|314925260|gb|EFS89091.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] Length = 210 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S +LT RE L+ + Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMARMRSPRTSLTARELDVLEAS 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IAE L +S TV +L KL +R A+AKA G+I Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVSSRSAAVAKARDIGFI 209 >gi|162453707|ref|YP_001616074.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] gi|161164289|emb|CAN95594.1| two-component system response regulator [Sorangium cellulosum 'So ce 56'] Length = 242 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 9/118 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKK--RSSAARNL 174 L G+++ + +LA + A G ++++ F+ + R+ L Sbjct: 121 LKAGARGFLLKDAGPELLAQAIRAAASGDALIAPRVTARLLSSFVASRPQLPRAQPGEAL 180 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T RE L + G T+ EIA++L +S+ TV A++ S KL A NR++ A G Sbjct: 181 TAREEEVLLIVARGRTNAEIADELHISLSTVKAHVASLMTKLGARNRVEIAIWAYETG 238 >gi|39979986|gb|AAR32909.1| SplR [Serratia plymuthica] Length = 249 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 67/223 (30%), Gaps = 25/223 (11%) Query: 37 TINSALDFPRRQQLICELHNYD--LDSGDIPNILIETY-------GDDFLFHFNSGLLPI 87 S+L P + N L P+ ++ Y D + P Sbjct: 21 RKLSSLGSPEYAYTVVRKKNPSDVLIISSYPDEWVDLYRANNFQLTDPVILTAFKRTSPF 80 Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--FTSEFLMLANEV 145 W + + L G F + + + S + Sbjct: 81 AWDE-NITLMSDLKFTKIFSLSKQYNIINGFTFVLHDHMNNLALLSVIIASNGQEELEKR 139 Query: 146 IIEAHGACYQVITDFLELFKKRSSAARN-------------LTERETSCLQLAGDGYTSE 192 + GA ++ D E + + AA + T RE L A G T Sbjct: 140 LSSERGAMQMLLIDINEQMYRLAGAASSSNQKYHTDADKPIFTPRENEVLYWASMGKTYG 199 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 EIA G+SV TV ++G+ VKL N QAI + I Sbjct: 200 EIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELIT 242 >gi|297192920|ref|ZP_06910318.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151558|gb|EFH31236.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELF-----KKRSSAA 171 L +G+++ L + + A +++ F + + R Sbjct: 95 LKAGASGFMLKDVPPGELLGAIRSVHSGDAVVAPSTTRRLLDRFSPMLPSAGPEPRQKEL 154 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 ARLTEREREVMMLVAQGLSNGEIAGRLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|228939396|ref|ZP_04101986.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972275|ref|ZP_04132888.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228978889|ref|ZP_04139256.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228780846|gb|EEM29057.1| DNA-binding response regulator [Bacillus thuringiensis Bt407] gi|228787459|gb|EEM35425.1| DNA-binding response regulator [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228820291|gb|EEM66326.1| DNA-binding response regulator [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 209 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V + + K+ + LT+R Sbjct: 91 LEAGADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPALMGRTAVKKEIENPFSMLTKR 150 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 151 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205 >gi|218235485|ref|YP_002366962.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264] gi|228952605|ref|ZP_04114681.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229069791|ref|ZP_04203074.1| DNA-binding response regulator [Bacillus cereus F65185] gi|229079433|ref|ZP_04211974.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|229150487|ref|ZP_04278703.1| DNA-binding response regulator [Bacillus cereus m1550] gi|218163442|gb|ACK63434.1| DNA-binding response regulator, LuxR family [Bacillus cereus B4264] gi|228632980|gb|EEK89593.1| DNA-binding response regulator [Bacillus cereus m1550] gi|228703890|gb|EEL56335.1| DNA-binding response regulator [Bacillus cereus Rock4-2] gi|228713326|gb|EEL65218.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228807071|gb|EEM53614.1| DNA-binding response regulator [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 213 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V + + K+ + LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPALMGRSAVKKEVENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|289432845|ref|YP_003462718.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT] gi|288946565|gb|ADC74262.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. GT] Length = 232 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS--AARNL 174 L YV+ S L V G Y + I ++E + +S L Sbjct: 94 LRAGAWAYVLKDSTSEELVRAVREAMQGHRYLSPPLSEKAIEAYMEKTAEATSLDPYETL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L GYT EIAEKL +S TV + + KLD N+ Q + A++ G I Sbjct: 154 TIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213 >gi|227497046|ref|ZP_03927297.1| LuxR family response regulator [Actinomyces urogenitalis DSM 15434] gi|226833464|gb|EEH65847.1| LuxR family response regulator [Actinomyces urogenitalis DSM 15434] Length = 222 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERE 178 GY++ S +A V G +++ S A L+ RE Sbjct: 104 AGATGYLVKDSPREDIAGAVRSAVRGYSAMSPAVTTRILAATRRSAAAPSDTAPALSPRE 163 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ +IA +L +S TV +L KL +R A+ +A+R G I Sbjct: 164 REVLAAVARGMSNAQIARELLISEATVKTHLLRVNNKLGVDSRTGAVMEALRQGLI 219 >gi|182679885|ref|YP_001834031.1| LuxR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gi|182635768|gb|ACB96542.1| transcriptional regulator, LuxR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 255 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 46/230 (20%), Positives = 78/230 (33%), Gaps = 3/230 (1%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 ++ S L HL + + F +T+ +R L +Y D D Sbjct: 16 QRRIDSADSLCALSHLTEEMCLSLGFPWFTLIRGKQLAKRDDRSILLTSYPQDWVDHVLK 75 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFH 127 D F + + + W I + + S ++ G P+RL Sbjct: 76 EKRHLDDPVHFAASRLVNGLSWNEIGQYVTLNSRQIETLESARRHGLNTGFTIPLRLDGF 135 Query: 128 KNGYVIFTSEFL-MLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQL 184 +N ++ +E + A L + +L+ R+ C+ L Sbjct: 136 ENAMFSMAKRKANVITSEERLLACLVGSVTFARAHALVTADAGIFTPVHLSPRQVDCVAL 195 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY+ EIA +LG+S TV Y+ A R Q A+R GY+ Sbjct: 196 LAKGYSDFEIARQLGISPETVREYITKARRSYGVKRRFQLAILAVRDGYL 245 >gi|30020351|ref|NP_831982.1| two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|229109704|ref|ZP_04239290.1| DNA-binding response regulator [Bacillus cereus Rock1-15] gi|229144857|ref|ZP_04273254.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|29895902|gb|AAP09183.1| Two-component response regulator yhcZ [Bacillus cereus ATCC 14579] gi|228638579|gb|EEK95012.1| DNA-binding response regulator [Bacillus cereus BDRD-ST24] gi|228673745|gb|EEL29003.1| DNA-binding response regulator [Bacillus cereus Rock1-15] Length = 213 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V + + K+ + LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPALMGRSAVKKEVENPFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 209 >gi|269139938|ref|YP_003296639.1| AHL-dependent transcriptional regulator [Edwardsiella tarda EIB202] gi|53147449|dbj|BAD52106.1| AHL-dependent transcriptional regulator [Edwardsiella tarda] gi|255529368|gb|ACU12619.1| AHL-dependent transcriptional regulator [Edwardsiella tarda] gi|267985599|gb|ACY85428.1| AHL-dependent transcriptional regulator [Edwardsiella tarda EIB202] gi|304559773|gb|ADM42437.1| EdwR [Edwardsiella tarda FL6-60] Length = 239 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 66/195 (33%), Gaps = 27/195 (13%) Query: 62 GDIPNILIETYGDDFLFHFN-------SGLLPIIWQSIQEETVIESSGQLS--VRLEGGL 112 + P+ + Y + H + + P +W E+ + S LS L Sbjct: 45 SNYPDEWVTLYKEHHYQHIDPVVISALRRVSPFLW---DEKITVNSKLNLSKIFNLSKKY 101 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------- 164 G F + ++ + + LA I + G ++ D E F Sbjct: 102 QVSRGYTFVLHDADNQLAMLSLMVDDRGLAE--IERSRGVLQMLLIDAHERFMNGQRHIT 159 Query: 165 -----KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 K+ + RE L A G T +EIA LG+ TV ++G+ KL + Sbjct: 160 AQHYCSKKEPIENIFSTRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVL 219 Query: 220 NRIQAIAKAIRFGYI 234 N AI + I Sbjct: 220 NAKHAIRLGVELQLI 234 >gi|294053956|ref|YP_003547614.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293613289|gb|ADE53444.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 218 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 3/110 (2%) Query: 126 FHKNGYVIF-TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY+ E + + A G Y L +R + + LT+RE L+L Sbjct: 105 AGVKGYLTKKAGEIEDVMEAIHEVARGGTY--FPSGLAQKLERRRSQKGLTDREMEVLKL 162 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EI +L LSV V ++ + KLDAV+R QA+ +A + G + Sbjct: 163 LASGLSNKEIGSELDLSVAMVKLHIINLREKLDAVDRTQAVVQAFKRGIL 212 >gi|228991252|ref|ZP_04151210.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] gi|228997351|ref|ZP_04156973.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|229004976|ref|ZP_04162703.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228756324|gb|EEM05642.1| DNA-binding response regulator [Bacillus mycoides Rock1-4] gi|228762443|gb|EEM11368.1| DNA-binding response regulator [Bacillus mycoides Rock3-17] gi|228768476|gb|EEM17081.1| DNA-binding response regulator [Bacillus pseudomycoides DSM 12442] Length = 211 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTERET 179 +GY + + L +I G +V L + +++ + LT+RE Sbjct: 97 AGADGYQLKEVQPDQLVASIIAVHQGNANFHPKVTPALLGRPAVKEEKKDSFSMLTKREK 156 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G + Sbjct: 157 EVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKNGVV 211 >gi|298251862|ref|ZP_06975665.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546454|gb|EFH80322.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 8/121 (6%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR 172 FP L Y++ + L V G +V+ + + + ++ Sbjct: 96 FPA-LRAGALSYLLKDVDPDELVETVRRAVRGESVLHPQVAARVVHELRKSKQTSTNPFA 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+L DG ++ EIA +L +S TV ++ + KL ++R QA A + G Sbjct: 155 ELSERELDVLRLIADGRSNAEIASRLSISEKTVKGHVSNILSKLYLLDRTQAAVFAWQQG 214 Query: 233 Y 233 Sbjct: 215 L 215 >gi|197658985|emb|CAR47858.1| putative DNA binding response regulator [Rhodococcus sp. PY11] Length = 222 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 57/119 (47%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE-------LFKKRSSAARNLTE 176 L Y+ + ++ + ++ A G VI L+ ++ S LT Sbjct: 106 LEHGAQAYLTKVASGQVVRDTLVDVAAGQT--VIPPVLQTGLVKEIRARQEVSGRVLLTP 163 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+LA G T+ +IA KL +SV TV +L + KLDA +R A+A+A+R G + Sbjct: 164 RELDVLRLAATGLTTSQIAGKLHVSVPTVKTHLRNTYDKLDASDRTAAVAQALRLGLLA 222 >gi|171913297|ref|ZP_02928767.1| two-component system regulatory protein [Verrucomicrobium spinosum DSM 4136] Length = 239 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GYV +S L + + A G + D + + +T RE L+ Sbjct: 97 LNAGAAGYVQKSSTREELLDALRRVAAGGT-SLPPDLAQRLES-QRIRLTVTPREREVLE 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++ IA +G++ TV ++ KL +R QA A+AIR G I Sbjct: 155 LIASGQSNKRIAAAIGITEDTVKRHVTHILEKLGVNDRAQATAEAIRRGII 205 >gi|83310354|ref|YP_420618.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945195|dbj|BAE50059.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 209 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G+ L + +I A G +++ F+++ S LT RE L Sbjct: 104 GAAGFCSKREPPEQLLDTIIAVAAG---RMVFPFIDVSSLASDPLAGLTPRERELLAALA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 G T++++A +L +S++TV +L + KL NR QA+A Sbjct: 161 GGLTNQQMAGQLDISLNTVKFHLKNLYDKLGVGNRAQAVA 200 >gi|325283103|ref|YP_004255644.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] gi|324314912|gb|ADY26027.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] Length = 233 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 9/109 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY+ ++ LA ++ +I D + R R LT RE+ L L Sbjct: 133 AGARGYLSKETDPPALATQLRA--------IIADPTQDRLPRVEVPR-LTPRESEVLPLL 183 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA +LG+S TV +L KLDA +R +A+++A G + Sbjct: 184 AQGLSNKEIARELGVSPDTVKDHLARMYGKLDACDRTEAVSRARTIGLL 232 >gi|298241780|ref|ZP_06965587.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554834|gb|EFH88698.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 236 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 55/132 (41%), Gaps = 20/132 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLEL------------- 163 L GY++ + L N V A G + +I ++ Sbjct: 102 LKKGAAGYIVKKAAPAELCNAVRTIAQGGAFLYPGLAKALIRAYVAPQNPPEQPGSLPPQ 161 Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + A + LT RE L+L +G T++EIA+KL +S+ TV A+ + KL + Q Sbjct: 162 RAELDKALQTLTGREMEVLKLVAEGSTNQEIADKLVISIKTVQAHRSNMMEKLGLHDITQ 221 Query: 224 AIAKAIRFGYIC 235 + A+ +G I Sbjct: 222 LVRFALHYGLIS 233 >gi|291571364|dbj|BAI93636.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 216 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 9/111 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------LTER 177 GY++ + LA + G F ++ + +R+ LT R Sbjct: 98 GAKGYLLKDTPSDELAQAIRAVYQGYTQLGPGLFEKVMAAKYKPSRDEPLPGYLQDLTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 E L+L G GY++ EIA++L +S TV ++ S +L+ +R Q A Sbjct: 158 ELEVLRLIGKGYSNREIAQELFISERTVKNHVSSILSRLNLRDRTQVALLA 208 >gi|228925087|ref|ZP_04088207.1| Two-component protein Kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834569|gb|EEM80088.1| Two-component protein Kinase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 592 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETPQSKATAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 532 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|56965136|ref|YP_176868.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56911380|dbj|BAD65907.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 209 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 56/116 (48%), Gaps = 4/116 (3%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTER 177 PV L YV+ TS + +A + +G +V + F + LT+R Sbjct: 92 PV-LEAGATSYVLKTSSAMQIAEAIRKTYNGESVLDAKVQGQMISAFTANVPLHQALTKR 150 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L+L +G T+++I+E+L +++ TV ++ KL+ +R QA+ A++ Sbjct: 151 ELEILKLMSEGKTNQQISEELYITIKTVKTHVSHILAKLEVEDRTQAVIYALKEKL 206 >gi|311895574|dbj|BAJ27982.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 220 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 11/118 (9%) Query: 127 HKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKR----SSAARNLT 175 GY++ ++ L + V A G V+ +F L + AA LT Sbjct: 95 GATGYLVKSAGREELLDAVRRTAVGDPVFTPGLAGLVLGEFRRLATEPGTSAEPAAPQLT 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+L G + +IA++L LS TV ++ + KL NR++ + AI G Sbjct: 155 PRETEVLRLVAKGLSYRQIADRLVLSHRTVQNHVQNTLGKLQLHNRVELVRYAIEQGL 212 >gi|73749035|ref|YP_308274.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|147669801|ref|YP_001214619.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|73660751|emb|CAI83358.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] gi|146270749|gb|ABQ17741.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] Length = 225 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 28/78 (35%), Positives = 40/78 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 D L K SS LT RE L L +G T+++IA L +S T+ ++ + KL Sbjct: 146 FQDVSMLGKDASSFVAPLTNREKQILTLIANGNTNKQIANNLEISEQTIKNHVSAILRKL 205 Query: 217 DAVNRIQAIAKAIRFGYI 234 +A +R A+ AIR G I Sbjct: 206 NANDRAHAVVVAIRCGLI 223 >gi|72162216|ref|YP_289873.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71915948|gb|AAZ55850.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 236 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 56/153 (36%), Gaps = 13/153 (8%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--- 151 SGQ + G AF V L G ++ S L V A G Sbjct: 71 RQWAADSGQTVQVVVVASSVAEGTAFEV-LQAGARGLLLRDSSPEELVRAVREVARGNAA 129 Query: 152 ACYQVITDFLELFKK---------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSV 202 C QV L+ ++ LT RE L+L G G T+ EIA +L L Sbjct: 130 LCPQVTARLLDRLAALPAAPQASGPAAEVARLTRREREVLRLLGRGLTNAEIARQLVLGE 189 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 TV ++G KL +R+QA+ G + Sbjct: 190 TTVKTHVGRVLAKLGLRDRVQAVVYTYEHGLVV 222 >gi|46201969|ref|ZP_00054016.2| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 209 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G+ L + +I A G +++ F+++ S LT RE L Sbjct: 104 GAAGFCSKREPPEQLLDTIIAVAAG---RMVFPFIDVSSLASDPLAGLTPRERELLAALA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 G T++++A +L +S++TV +L + KL NR QA+A Sbjct: 161 GGLTNQQMAGQLDISLNTVKFHLKNLYDKLGVGNRAQAVA 200 >gi|332669606|ref|YP_004452614.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332338644|gb|AEE45227.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 224 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA--------- 171 L +G+++ + LA V A G +V LELF + AA Sbjct: 94 LRAGASGFLLKDAAPADLAAAVRTVAGGEAVVSARVTRRMLELFAEHLPAAGADRGRDAP 153 Query: 172 ----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+ +G ++ EIA++L LS TV ++G KL +R+QA+ Sbjct: 154 HPRLAGLTPREVEVLREVAEGLSNGEIADRLFLSEATVKTHVGRILAKLRVRDRVQAVVV 213 Query: 228 AIRFGYI 234 A G + Sbjct: 214 AYETGLV 220 >gi|238062472|ref|ZP_04607181.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237884283|gb|EEP73111.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 226 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS--AARNL 174 L G+++ ++ L + V A G V+ FL + A + L Sbjct: 100 LRAGAAGFLLKDTDPEQLGHLVRTLAAGDTVLASKVTRTVVDGFLRSGGDEHAVRAVQRL 159 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L L DG ++ EI ++ LS TV ++ + KL NR++A A R G + Sbjct: 160 TEREREVLTLLADGLSNSEIGGRMFLSAGTVKDHVSAILTKLGVDNRVRAALLAERAGLL 219 Query: 235 C 235 Sbjct: 220 S 220 >gi|328886268|emb|CCA59507.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 203 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 56/111 (50%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ + LA V A G +VI L L +S+ LT RET L+ Sbjct: 95 LSAQVAGFLLKDAPPNELAEAVRNVAAG--RRVINSQLAL-SAWNSSQSPLTTRETEVLR 151 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA +G EIA +L LS+ TV YL S KL+A NR+ AI A+ ++ Sbjct: 152 LAAEGLEPIEIAGRLRLSLGTVRNYLTSVVTKLNARNRVDAIKIAMDADWL 202 >gi|298251729|ref|ZP_06975532.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546321|gb|EFH80189.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS-----AA 171 L GY++ ++ L + + + G + +++ + F S Sbjct: 101 LRAGACGYLLKDTDRETLFHAIRTASRGDIFLQPEVMARILVRTTDAFHPTPSRSQAEGE 160 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L+ G S+EIA +LG+S+ TV ++L S KL +R A+A I+ Sbjct: 161 SELTERERDVLEAVACGERSKEIASRLGISLRTVESHLTSIYAKLGVDSRASAVAVGIKR 220 Query: 232 GYIC 235 G + Sbjct: 221 GLLS 224 >gi|297158223|gb|ADI07935.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 212 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 5/112 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCL 182 GY++ + LA+ + A G +V + ++ LT RET L Sbjct: 100 AGAIGYLLKDTTREQLADAIRSAARGETVLAPRVAEKLIARMRR--PVQDPLTARETDVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI ++L ++ TV +L KLD +R +A+ A+ G + Sbjct: 158 NAVADGLTNAEIGKRLVITEATVKTHLLRLFAKLDVNDRTRAVVVALERGLL 209 >gi|289669289|ref|ZP_06490364.1| two-component system regulatory protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 200 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + + G +VI L + A L+ERE + L+ Sbjct: 94 LDAGVAGYLLKDAPAEQLVDALRQVQRGG--RVIDPQLAI--DAWVEADPLSERERTILR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG+G ++ EIA++L LS TV YL KL NRI+A A + G++ Sbjct: 150 LAGEGRSTSEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200 >gi|282866345|ref|ZP_06275390.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282558741|gb|EFB64298.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 224 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELF-----KKRSSAA 171 L +G+++ L + + + A +++ F + + + Sbjct: 95 LKAGASGFMLKDVPPAELLSAIRSVHSGDAVVAPSTTRRLLDRFSPMLPSSGREPQHKHV 154 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 ERLTEREREVMLLVAQGLSNGEIAGRLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|311743637|ref|ZP_07717443.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311312767|gb|EFQ82678.1| LuxR family DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 220 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 7/115 (6%) Query: 127 HKNGYVIFTSE-FLMLANEVIIEAHG---ACYQVITDFLELF---KKRSSAARNLTERET 179 +GY++ + + V + A G + T L+ F + + A +LT RE Sbjct: 103 GASGYLLKDGSTYDQVGEAVRLVASGQSLISPTMATKLLDEFVQISRTPAPAASLTAREL 162 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G+++ EIA +L +S +TV ++ + KL +R++A A+R + Sbjct: 163 QVLRHVAKGFSNREIAGELFISENTVKNHIRNILEKLQMKSRMEAAMYAVRSRLV 217 >gi|227506297|ref|ZP_03936346.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227197109|gb|EEI77157.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 205 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + V+ A G L ++ + L+ RE L+ Sbjct: 97 AGALGYLLKDAPEQALHDAVLATAAGKRTLAPEVAALLAERITRPEVALSSRELEILEAL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A++L +S TV +L KL R A+ A I Sbjct: 157 ATGKSNKELAQRLFISEATVKTHLIHIYQKLGVDTRTAAVTVARERKLI 205 >gi|264677722|ref|YP_003277628.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|299530281|ref|ZP_07043706.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|262208234|gb|ACY32332.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|298721652|gb|EFI62584.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 253 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 11/118 (9%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--------ARNLT 175 GY++ S F V+ +G + L+ + KR + + L+ Sbjct: 135 GATGYLVKNSWFGNYPQAVLQVVNGGASITPSLARRLLQRYDKRPATGAVPGSGMSDRLS 194 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L++ G TS EI +L +S TVN ++ + KL R QA+ A G+ Sbjct: 195 SRECEVLRMVASGNTSAEIGVQLEISTMTVNTHIKNIYRKLQVRTRAQAVRFAYLRGW 252 >gi|229091257|ref|ZP_04222475.1| DNA-binding response regulator [Bacillus cereus Rock3-42] gi|228692023|gb|EEL45764.1| DNA-binding response regulator [Bacillus cereus Rock3-42] Length = 209 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 4/113 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFK-KRSSAARNLTERET 179 L +GY + + L +I G +V L K+ + LT+RE Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAIYEGNANFHPKVTPAILGRSAVKKENPFSMLTKREQ 154 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 155 EVLQEIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 207 >gi|326775725|ref|ZP_08234990.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326656058|gb|EGE40904.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 213 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 50/109 (45%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + LA V A G + L + + A LT RE LQL Sbjct: 103 AGASGYLLKDAPPQELAAAVRTAAAGRSALAPSVAHRLMDRMRTPAEALTRRELEVLQLV 162 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G ++ +I+++L LS TV ++L KL +R A+A A I Sbjct: 163 GEGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 211 >gi|258652795|ref|YP_003201951.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556020|gb|ACV78962.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 144 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + LA + H V EL S L +RE L+ Sbjct: 38 LDAGAGGYLLKDAPSATLAAAIRTV-HAGGRAVDP---ELAADAWSEPDPLADREREVLR 93 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L DG ++ +IA +L LS TV YL AT KL A NRI A +A G++ Sbjct: 94 LTEDGLSNADIARRLHLSEGTVRNYLSEATHKLGAGNRIAAARQARERGWL 144 >gi|296139134|ref|YP_003646377.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027268|gb|ADG78038.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 222 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK-------RSSAARN 173 L G+V+ S L V + A G V L+ ++ R+ A Sbjct: 98 LRAGVAGFVLKDSPAEELIRAVRLVAAGEAVLDPAVTGRVLQTYRAARQPATTRAGAVDP 157 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G G ++++IA +L +S+ TV +++GS KL NR +AI A G Sbjct: 158 LTAREVDVLGLVGRGLSNDDIAAELVISIVTVKSHIGSIFTKLGVRNRAEAIVWAFDNGV 217 Query: 234 IC 235 + Sbjct: 218 VA 219 >gi|163940925|ref|YP_001645809.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163863122|gb|ABY44181.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 595 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 475 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQIETPQSKATAYEL 534 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 535 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEIGII 594 >gi|329937507|ref|ZP_08287065.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329303383|gb|EGG47270.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 219 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA--RNL 174 L +G+++ L + + A G +V+ FL R L Sbjct: 95 LRAGASGFLLKDIRPGELVEAIRLTARGEALLAPTVLTRVLDRFLRTLPDPEPPPSLREL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE L L G ++ EIA +L LS TV ++ + KL +R+QA+ A G + Sbjct: 155 SGREREVLTLIGRALSNAEIAARLCLSEATVKNHVTAVLRKLGLRDRVQAVVTAYDHGLV 214 >gi|329948190|ref|ZP_08295062.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328522923|gb|EGF50028.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 215 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLEL--FKKRSSAARNL 174 L +G+++ E L + V A G +VI +F + A L Sbjct: 96 LEAGADGFILKDCEPEELVDAVRRLALGYGLVDQSVTRRVIAEFARRQGRSENHEALGVL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE +QL G ++ EIA L + TV ++L K+ A +R+QA+ A R G Sbjct: 156 TEREREVIQLLASGMSNAEIAAALVVETSTVKSHLTRILPKIGARDRVQAVVWAYRNGL 214 >gi|327330300|gb|EGE72049.1| nitrate/nitrite response regulator protein NarL [Propionibacterium acnes HL097PA1] Length = 210 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S +LT RE L+ + Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMARMRSPRTSLTARELDVLEAS 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IAE L +S TV +L KL +R A+AKA G+I Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGFI 209 >gi|326382365|ref|ZP_08204057.1| LuxR family two component transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] gi|326199095|gb|EGD56277.1| LuxR family two component transcriptional regulator [Gordonia neofelifaecis NRRL B-59395] Length = 215 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 47/111 (42%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + + A G L ++ S +TERE L+ Sbjct: 102 LDAGALGYLLKDAPAEELLSAIRATARGETVLSPAIAATLVRRSSQPGPTITEREVEVLE 161 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++E+A+ + +S TV A+L KL R A+A AI I Sbjct: 162 LLARGMGNKELAKTMFISEGTVKAHLAHVYGKLGVDTRAGAVAAAIERRII 212 >gi|171915509|ref|ZP_02930979.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 209 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GYV ++E L V G Y +L +++ A LT RE L+ Sbjct: 99 AGASGYVSKSAEVEELLEVVRRIFAGEQYFSPNVAAKLAARQARNA--LTPRELQVLRHI 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY+++EIA KL +S TV ++ + KL+ +R QA +A++ G + Sbjct: 157 VAGYSNKEIAAKLHMSEATVKLHISNTLDKLNVADRTQAAIEAVKRGIV 205 >gi|332978068|gb|EGK14806.1| nitrate/nitrite response regulator protein NarL [Desmospora sp. 8437] Length = 216 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFK-----KRSSAARNLTER 177 GY++ + + + + + G + L+ R S +LT R Sbjct: 97 AGATGYLLKDAPSSDVIDAIRSASRGESTLHPVMARKLLDNISGGKKTDRGSNEDSLTPR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L L G +++EIAE+L +S TV ++ + KL +R QAI AI+ + Sbjct: 157 ELDVLNLMVKGLSNKEIAEQLFISDKTVKIHVSNILKKLRVKSRSQAIIYAIQHELV 213 >gi|218296777|ref|ZP_03497483.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] gi|218242866|gb|EED09400.1| two component transcriptional regulator, LuxR family [Thermus aquaticus Y51MC23] Length = 207 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETS 180 L GYV + L + V+ A G Y + + S+ L+ RE Sbjct: 94 LQAGGQGYVSKAAVDQELLDAVLAVARGERYLNPALAMRLAMELVRESAEEAPLSPREEE 153 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G + +E+AEKLG+S TV Y KL +R + + A R G+I Sbjct: 154 VLRLLAQGLSHKEVAEKLGISEKTVATYRERGMEKLGLASRSELLRYAARKGWI 207 >gi|188993492|ref|YP_001905502.1| Two-component system response regulator, LuxR family [Xanthomonas campestris pv. campestris str. B100] gi|167735252|emb|CAP53466.1| Two-component system response regulator, LuxR family [Xanthomonas campestris pv. campestris] Length = 200 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + + G +VI L + A L+ERE + L+ Sbjct: 94 LDAGVAGYLLKDAPAEQLVSALRTVQRGG--RVIDPQLAM--DAWVEADPLSERERTVLR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG+G ++ EIA++L LS TV YL KL NRI+A A + G++ Sbjct: 150 LAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200 >gi|226226404|ref|YP_002760510.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226089595|dbj|BAH38040.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 209 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + Y++ E L + V A A + I + A+ LT R+ L+ Sbjct: 98 LRAGASSYLLKDVEPAQLIDTV--HAVYAGRKAIDPSIAAKLAEHVASDALTARQLEVLR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ EIA L +S TV A++ + KL A +R QA+ I+ G I Sbjct: 156 SLAEGRSNIEIANTLYISEGTVKAHIKAILQKLGARDRTQAVTIGIKRGLI 206 >gi|169628613|ref|YP_001702262.1| putative two-component system response regulator LuxR [Mycobacterium abscessus ATCC 19977] gi|169240580|emb|CAM61608.1| Putative two-component system response regulator LuxR [Mycobacterium abscessus] Length = 218 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-----NLT 175 L G+++ S L V A G Y V + L +++ +A LT Sbjct: 97 LRAGAAGFILKDSPAEELVRAVHAVARGEAYLDPAVTSRVLNAYRRAPAAVSGDAQDKLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L L G T+ EIAE+L +S TV +++G VKLD +R AI A G + Sbjct: 157 ARELDVLALIASGATNSEIAEQLVISEVTVKSHIGRIFVKLDLRDRAAAIVYAYDHGIVT 216 >gi|126464154|ref|YP_001045267.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] gi|126105965|gb|ABN78495.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC 17029] Length = 238 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 79/235 (33%), Gaps = 13/235 (5%) Query: 1 MSENTLTGKKSSSLQELSPRLHLIQNRIKAR---NFALYTINSALDFPRRQQLICELHNY 57 MS +T S+ R L Q A F Y++ L + Sbjct: 1 MSLLAVTANAVGSISRAESRNELSQALKDAVVGLGFQTYSLAYQRPHALEAVTAPHLTTW 60 Query: 58 DLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG 117 + + D L + +G+ P+IW+S +++ AG Sbjct: 61 PCEQDGASDPASARIRDPLLDYAVTGIKPLIWRSGSWKSL---RKYRYFPCLHSFEARAG 117 Query: 118 IAFPVRLGFHKNGYV-IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---- 172 + P+ + G + + +++ E+ V+ L ++ + Sbjct: 118 LIVPLPDRRGRVGAITMLSAQREDYPEEIAEAGRIVALAVLVRAGSLLPAAAAVSPALAG 177 Query: 173 --NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ R+ L G ++ EIA LGLS V ++ KLD +R QA+ Sbjct: 178 LAKLSPRQIEILDWIAHGKSNSEIALILGLSRRNVTYHVSEILKKLDVTSRTQAV 232 >gi|298242293|ref|ZP_06966100.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555347|gb|EFH89211.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 197 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQL 184 GY++ + L + A G L + + + L+ERE L L Sbjct: 82 AGATGYILKDAPREQLFAAIRTVAQGKSVFAPEVVTRLLRHMQTPPSSVLSERELEVLAL 141 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G G +++E A L +S T+ ++L KL +R A+ A+ G + Sbjct: 142 VGRGASNKEAARSLFISEATIKSHLLRIFGKLGVEDRTAAVTVALEKGML 191 >gi|291451125|ref|ZP_06590515.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291354074|gb|EFE80976.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 223 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------------KKRSSAA 171 L +G+++ S L + V + HG + F + Sbjct: 95 LHAGASGFLLKDSPPASLVSAVRVI-HGGNALLDPAVTRRFIEDIVRRRPRPRRDPRLQL 153 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RET L+L G ++ EIAE+L L+ TV ++ KL +R QA+ A Sbjct: 154 NGLTPRETEVLELVARGLSNLEIAEQLVLAEQTVKTHISRILSKLGIRDRAQAVIAAYES 213 Query: 232 GYI 234 G + Sbjct: 214 GLV 216 >gi|302518567|ref|ZP_07270909.1| two-component system regulator [Streptomyces sp. SPB78] gi|302427462|gb|EFK99277.1| two-component system regulator [Streptomyces sp. SPB78] Length = 226 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 14/121 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSS-------AAR 172 GY++ ++ L V A G V+ ++ L + Sbjct: 102 GATGYLVKSASTEELIEAVRRTAVGDAVFTPGLAGLVLGEYRRLAAEPEPKTSGGGPETP 161 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 162 RLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQG 221 Query: 233 Y 233 Sbjct: 222 L 222 >gi|253575241|ref|ZP_04852579.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845238|gb|EES73248.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 221 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 6/114 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK---RSSAARNLTERET 179 Y++ TS +A + A G QV + + F++ + A LTERE Sbjct: 106 AGAFSYLLKTSRAFEIAEAIRAAARGQSVLESQVASKMMNRFRQPKVEAPAHEELTEREM 165 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G ++++IA++L + + TV ++ + KL +R QA A + G Sbjct: 166 DVLRLLAQGKSNQDIADELIIGIKTVKFHVTNILAKLGVEDRTQAAIYAYKNGL 219 >gi|182435647|ref|YP_001823366.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178464163|dbj|BAG18683.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 222 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 53/121 (43%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLE--LFKKRSSAARNL 174 L +G+++ + F L + V + A G ++I +F + + L Sbjct: 96 LTAGASGFLLKDATFPELLHAVRVVAGGHALLAPEITGRLIAEFTRQRVSAPPPRSVDGL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G ++ +IA++L ++ HTV ++ K+ +R QA+ A G + Sbjct: 156 TAREVEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYERGLV 215 Query: 235 C 235 Sbjct: 216 A 216 >gi|288553881|ref|YP_003425816.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288545041|gb|ADC48924.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 211 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L +GY + + LA + G V+T + + + LT+ Sbjct: 94 LKAGASGYQLKDIDPEELAETIRALHAGESKVHSKVMKYVLTRISHKEDEEEAKVKRLTK 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L G +++E+A+ L + TV ++ + KL+ +R QA A+R G Sbjct: 154 REKEVLIELAKGRSNKELADVLHIKEKTVKTHISNILSKLELSDRTQAALFAMRMGI 210 >gi|269836639|ref|YP_003318867.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785902|gb|ACZ38045.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 237 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK-----RSSAARNLTER 177 + Y++ SE + + + A G Q+ T L F++ LTER Sbjct: 117 AGADAYLLKNSESSKVIDAIRAVARGESVIEPQLATKLLNEFRRISEFREEETVAGLTER 176 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L+L G +++EIA +L L+ TV L KLD +R QA A+ G I Sbjct: 177 EIQLLRLVASGMSNKEIAAELSLAESTVKNRLSLLFEKLDVKDRTQAAIYALSHGLIT 234 >gi|119509629|ref|ZP_01628775.1| two-component response regulator [Nodularia spumigena CCY9414] gi|119465648|gb|EAW46539.1| two-component response regulator [Nodularia spumigena CCY9414] Length = 238 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 27/65 (41%), Positives = 41/65 (63%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AA LTERE LQL +G ++ +IAE+L ++V TV ++ + KL A +R QA +A+ Sbjct: 173 AAYTLTERELEVLQLIVEGCSNADIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 232 Query: 230 RFGYI 234 R G + Sbjct: 233 RSGLV 237 >gi|73748824|ref|YP_308063.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|73660540|emb|CAI83147.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] Length = 232 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 50/120 (41%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS--AARNL 174 L YV+ S L V G Y + I ++E + +S L Sbjct: 94 LRAGAWAYVLKDSTSEELVRAVREAMQGHRYLSPPLSEKAIEAYMEKTAEATSLDPYETL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L GYT EIAEKL +S TV + + KLD N+ Q + A++ G I Sbjct: 154 TIREREVLHLVSQGYTCAEIAEKLFISPRTVEVHRANMMRKLDLRNQTQLLRYALQRGII 213 >gi|289666383|ref|ZP_06487964.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 200 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + + G +VI L + A L+ERE + L+ Sbjct: 94 LDAGVAGYLLKDAPAEQLVDALRQVQRGG--RVIDPQLAI--DAWVEADPLSERERTILR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG+G ++ EIA++L LS TV YL KL NRI+A A + G++ Sbjct: 150 LAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200 >gi|282861398|ref|ZP_06270463.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564056|gb|EFB69593.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 226 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLE--LFKKRSSAARNL 174 L +G+++ + F L + V + A G ++I +F + + L Sbjct: 96 LAAGASGFLLKDATFPELLHGVRVVARGHALLAPEITQRLIGEFARQRISCPPDRSVDGL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G ++ +IA +L ++ HTV ++ K+ +R QA+ A G + Sbjct: 156 TAREVEVLVLIARGLSNADIAARLSITDHTVKTHINRLFAKMGLRDRAQAVILAYELGLV 215 Query: 235 C 235 Sbjct: 216 V 216 >gi|306431674|emb|CBM41479.1| N-acyl homoserine lactone sensor/regulator [Erwinia toletana] Length = 245 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 26/196 (13%) Query: 62 GDIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSGQLS--VRLEGGL 112 + P ++TY ++ H + +L P W + V+ S + S L Sbjct: 48 SNYPKEWVDTYLENNYQHIDPVILTAINKISPFSW---DDNQVVNSRLKFSRIFNLSKQY 104 Query: 113 LPFAGIAFPVRLGFHKNGYVIF------TSEFLMLANE-------VIIEAHGACYQVITD 159 G F + + +S + ++IEAH + + Sbjct: 105 NIVNGYTFVLHDNNSNLATLSLMLDEQDSSSIEEVIKSNKNKIQMLLIEAHEKITSLYKN 164 Query: 160 FLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +E K ++ +++ ++RE L A G T EIA LG+ + TV ++G+ KL Sbjct: 165 IIESEKNKAINKKDIFSQRENEILYWASIGKTYPEIAVILGIKISTVKFHIGNVVKKLGV 224 Query: 219 VNRIQAIAKAIRFGYI 234 +N AI + I Sbjct: 225 LNAKHAIRLGVELQLI 240 >gi|209523263|ref|ZP_03271819.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209496414|gb|EDZ96713.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 220 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 9/118 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------LTER 177 GY++ + LA + G F ++ RS A+R+ LT R Sbjct: 97 GAKGYLLKDTPSDELAQAIRAVYKGYTQLGPGLFEKVMAARSKASRDEPLPDNLQDLTPR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L+L G GY++ EIA++L +S TV ++ S L+ +R Q A ++ + Sbjct: 157 ELEVLRLIGKGYSNREIAQELFISERTVKNHVSSILSSLNLRDRTQVALLANQYPILS 214 >gi|229552033|ref|ZP_04440758.1| response regulator [Lactobacillus rhamnosus LMS2-1] gi|229314610|gb|EEN80583.1| response regulator [Lactobacillus rhamnosus LMS2-1] Length = 203 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 NGY++ S L + G + ++ + LTERE + L Sbjct: 96 AAQVNGYLLKDSPSDDLIAVIRKVMTGQTVYAPELVANMV---TAESNPLTERELAVLGE 152 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G +S++IA L LS TV YL + KL NRI+AI A R ++ Sbjct: 153 VASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRNKWLA 203 >gi|228908028|ref|ZP_04071877.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] gi|228851625|gb|EEM96430.1| DNA-binding response regulator [Bacillus thuringiensis IBL 200] Length = 209 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF---KKRSSAARNLTER 177 L +GY + + L +I G +V + K+ + LT+R Sbjct: 91 LEAGADGYQLKEVQPEQLVASIIAVHQGNANFHPKVTPALMGRSTVKKEIENPFSMLTKR 150 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G Sbjct: 151 EQEVLREIAKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKHG 205 >gi|224552981|gb|ACN54740.1| PagR [Pantoea agglomerans] Length = 210 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 10/185 (5%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG---QLSVRLEGGL 112 N + + DI + D + + W E VI S G Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRSIEDFFW----ENNVILSGGYNLTRIFNESFQY 83 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKR-SS 169 F G FP+ + + S+ + + + ++ L L+ + Sbjct: 84 NIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVNFLIKLHQKTLNLYSQHHQK 143 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ G G T E+A L ++ TV ++G+ KL N A+ Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGT 203 Query: 230 RFGYI 234 + Sbjct: 204 ELRLL 208 >gi|196229817|ref|ZP_03128681.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226143|gb|EDY20649.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 210 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L Y+ + LA + G Y + + + R L+ERE LQ Sbjct: 99 LQLGARTYLPKSVLEKELAEAIRAIHGGGSY--VPPLVAARLAERTHHRELSEREIEVLQ 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA L ++ TV ++G+ KL +R QA AI+ G + Sbjct: 157 RIVKGLSNKEIAGHLFITEATVKLHVGNILTKLGVQDRTQASTVAIQRGIV 207 >gi|90423532|ref|YP_531902.1| LuxR family transcriptional regulator [Rhodopseudomonas palustris BisB18] gi|90105546|gb|ABD87583.1| transcriptional regulator, LuxR family [Rhodopseudomonas palustris BisB18] Length = 242 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 86/240 (35%), Gaps = 25/240 (10%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + +++ +L L I + + + ++ R LI P Sbjct: 14 RVAATADDLHHVLRHICEAYQLAHAVFHATDTPAVRAERPLLIL----------TYPAEW 63 Query: 69 IETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 +E Y D + G L + W +I ++T SS + + + G+ Sbjct: 64 VENYTRRDYFKIDPVVAIGRVGFLSLDWSTIDQKTA--SSAKFFREADEFGVGRHGLTTT 121 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------NLT 175 VR + TS +A +Q+I + S+ R L+ Sbjct: 122 VRGPSGERSLFTVTSNANAAQWTRQRDACIHEFQIIANHFHQRAMISTGLRGGDGPLPLS 181 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +RE C++L G+ ++IA L LS + YL SA KL A QAIA A+ I Sbjct: 182 KREKQCIELLAKGFLPKQIAALLDLSESAIRLYLCSARRKLQASTTSQAIAIALSLELIT 241 >gi|300784547|ref|YP_003764838.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794061|gb|ADJ44436.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 186 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKK---RSSAARNLTERETS 180 Y++ ++ +++ + V G Y + L + + R L+ RE Sbjct: 72 AGAQAYLLKSASPVVVTDGVRRVLEGGVYADPSVAPVLATGTRVAGTDNTPRELSAREVE 131 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQL DG +++EI E+L LS TV ++L KL +R Q +A A+R G I Sbjct: 132 VLQLVADGQSNKEIGEELSLSALTVKSHLSRIGRKLGTGDRAQMVALAMRAGVI 185 >gi|320012105|gb|ADW06955.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 216 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L +G+++ + + N V + A G A Q+ ++ + LT Sbjct: 96 LRAGADGFLLKRARPAEIVNAVRLVAEGETLLFPAAVRQLAAEYGTSKAHAAMDRAALTT 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE + L+L G ++ EIA +L + V TV ++ S KL A +R QA+ A G++ Sbjct: 156 REAAVLRLMARGLSNSEIAAELVVGVETVKTHVSSVLAKLGARDRTQAVIAAYESGFVA 214 >gi|224824369|ref|ZP_03697477.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] gi|224603788|gb|EEG09963.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] Length = 222 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 10/119 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA-------RN 173 L GY++ + L +I A G + + F+ + A Sbjct: 98 LKAGARGYLLKNIDADFLKQSIIKAAAGESVMSEAMTAKLMAHFRAGAPAPSQQQQELEK 157 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G +++EIA L L+ TV ++ + KL +R+QA A+ G Sbjct: 158 LTPREREILGFLAQGQSNKEIARTLDLAESTVKIHVQNILKKLGLSSRVQAAVYAVEHG 216 >gi|297561045|ref|YP_003680019.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845493|gb|ADH67513.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 247 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNL-- 174 L G+++ + + + + + A G ++I++F L + AR L Sbjct: 111 LRAGAAGFLLKDTPPSRVLDAITVVAAGDALLAPSVTRRLISEFARLPEPGRPPARALDG 170 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L L G ++ E+AE L LS+ TV ++G KL A +R Q + A G Sbjct: 171 VTDREVEVLGLIARGLSNTELAEHLHLSLATVKTHIGRLRAKLGARDRAQLVITAYETGL 230 Query: 234 I 234 + Sbjct: 231 V 231 >gi|258539446|ref|YP_003173945.1| LuxR family two-component response regulator [Lactobacillus rhamnosus Lc 705] gi|257151122|emb|CAR90094.1| Two-component response regulator, LuxR family [Lactobacillus rhamnosus Lc 705] Length = 202 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 NGY++ S L + G + ++ + LTERE + L Sbjct: 95 AAQVNGYLLKDSPSDDLIAVIRKVMTGQTVYAPELVANMV---TAESNPLTERELAVLGE 151 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G +S++IA L LS TV YL + KL NRI+AI A R ++ Sbjct: 152 VASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRNKWLA 202 >gi|312136161|ref|YP_004003499.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor owensensis OL] gi|311776212|gb|ADQ05699.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor owensensis OL] Length = 213 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 14/116 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS------------SAA 171 L F +GY++ +S+ + + + G VI LF S + Sbjct: 95 LSFGADGYILKSSDAQHIIDTIHAVLDGKV--VIDKETALFVANSLKKDFQNHSINENKL 152 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +NL+ERE +L GY++++I++ L +S TV Y+ S KL+ NR Q Sbjct: 153 KNLSERELEIARLIAQGYSNKDISKILFISEGTVRNYISSILEKLELKNRTQIAVY 208 >gi|311031073|ref|ZP_07709163.1| two-component response regulator [Bacillus sp. m3-13] Length = 213 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAAR--NL 174 L GY++ ++ L + + +G +V+ + + S+ L Sbjct: 94 LRLGALGYLLKDADAANLLSSIESCLNGGISIDASVAGKVVPRLINRPGQAPSSMEMVEL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE S LQL G+G ++EIAE L LS+ TV ++ KL +R Q AIR G + Sbjct: 154 TSRERSILQLVGEGKNNQEIAEALYLSIGTVKNHVTVILQKLGLRDRTQLAIFAIRNGVV 213 >gi|325001951|ref|ZP_08123063.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 223 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 12/120 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKR-----SSAARN 173 GY++ ++ L + A G V+ ++ L + S A Sbjct: 102 AGALGYLVKSAGVDELLEAIRRTARGVAVFTPGLAGLVLGEYRRLAETPKPADGSPAVPA 161 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L+L G T+ +IA KL +S TV +++ + KL NR Q + AI G Sbjct: 162 LTERETEVLRLVAKGMTARQIAAKLVVSHRTVESHVQNTLRKLQLHNRSQLVRYAIEQGL 221 >gi|325964357|ref|YP_004242263.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470444|gb|ADX74129.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 241 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------- 173 + G+++ S LA + A G + + L F R++ ++ Sbjct: 117 MRAGAAGFLLKNSAPQTLATAIRALAKGDGWLDPAITRSLLRHFSSRAADGQSVPTADIS 176 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G + EIA KL LS TV ++ +KL +R QA+A A R G Sbjct: 177 VLTAREREVLGAMAVGLKNAEIANKLFLSETTVKTHVHRILLKLGLSDRSQAVAVAYRSG 236 Query: 233 YI 234 I Sbjct: 237 LI 238 >gi|297583730|ref|YP_003699510.1| LuxR family two component transcriptional regulator [Bacillus selenitireducens MLS10] gi|297142187|gb|ADH98944.1| two component transcriptional regulator, LuxR family [Bacillus selenitireducens MLS10] Length = 212 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 4/114 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL-ELFKKRSSAARNLTERET 179 L Y++ TS +A + G +V + + KK + LT RE Sbjct: 94 LEAGATSYMLKTSRAGDIAKAIRDTHAGQSILEPEVAGKLMSRMHKKPPAEHEQLTAREL 153 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G +++EI + L +S+ TV ++ + KL +R QA+ A + Sbjct: 154 EVLELMSRGMSNQEIGDALYISLKTVKVHVSNILSKLGVHDRTQAVIYAFKENL 207 >gi|284043929|ref|YP_003394269.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283948150|gb|ADB50894.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 221 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 49/120 (40%), Gaps = 10/120 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLEL---FKKRSSAARNLT 175 G+V+ S L V A G +V+ + L + + LT Sbjct: 96 AGAAGFVLKDSSAEELIAAVRAVAGGGAWFDPGVAPRVLDHYRRLVAPAAREGTRLELLT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ERE L+L G T+ EIA L ++ TV ++GS KLD +R AI A G I Sbjct: 156 EREHDVLRLMARGATNAEIAATLFVAEATVKTHVGSIFSKLDVRDRAAAIVYAYDHGVIA 215 >gi|242374097|ref|ZP_04819671.1| response regulator [Staphylococcus epidermidis M23864:W1] gi|242348222|gb|EES39824.1| response regulator [Staphylococcus epidermidis M23864:W1] Length = 207 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + +G + + +E K+ L++RE L+ Sbjct: 98 GADGYEMKDVEPQKLIETIHKVLNGERIIHPEAKNVIEAVSKKPHFTNKLSKREVEVLRE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIA+ L +S T+ ++ KL +R QA A+ I Sbjct: 158 MVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENKLI 207 >gi|186681582|ref|YP_001864778.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464034|gb|ACC79835.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 226 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA------ARNLTE 176 GYV L + Y +V + F F+ S + +LTE Sbjct: 107 AGAAGYVFKNRVATQLCEAIDTVTRAEIYLPSEVASRFFRFFQAYSDSCLKACHEVHLTE 166 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G ++EEIA+ L ++V TV A+L S KL +R QAI A++ G + Sbjct: 167 REQEVLYWLTQGASNEEIAKHLYVTVATVKAHLTSIFEKLKVTSRTQAIVAALKLGLV 224 >gi|289665829|ref|ZP_06487410.1| two-component system regulatory protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 199 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ ++ L + + G QV E L+ RET L Sbjct: 86 LQAGACGYLLKSALRRELVDTIRGVRRGQRRQVPVAVAENIAAH-VLDDALSARETEVLN 144 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G ++++I L +S TV A++ + KL +R A+ A+R G + Sbjct: 145 LVATGCSNKQIGSALSISEETVKAHMKNILAKLGVRDRTHAVIVALRRGILS 196 >gi|294628886|ref|ZP_06707446.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14] gi|292832219|gb|EFF90568.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14] Length = 222 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 18/125 (14%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK-----------RS 168 GY++ ++ L + V A G V+ ++ L + Sbjct: 95 GATGYLLKSASTQELLDAVRRTAAGDPVFTPGLAGLVLGEYRRLAAEPAPAAGAGTDGPE 154 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A LTERET L+L G + ++IAE+L +S TV ++ + KL NR++ + A Sbjct: 155 PGAPRLTERETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYA 214 Query: 229 IRFGY 233 I G Sbjct: 215 IERGL 219 >gi|326940929|gb|AEA16825.1| two-component protein kinase [Bacillus thuringiensis serovar chinensis CT-43] Length = 595 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 475 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETPQSKATAYEL 534 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 535 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEIGII 594 >gi|293393478|ref|ZP_06637789.1| transcriptional activator protein CarR [Serratia odorifera DSM 4582] gi|291424079|gb|EFE97297.1| transcriptional activator protein CarR [Serratia odorifera DSM 4582] Length = 245 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 64/196 (32%), Gaps = 26/196 (13%) Query: 62 GDIPNILIETYGDDFLFHFN-------SGLLPIIWQSIQEETVIESSGQLS--VRLEGGL 112 + P+ + Y ++ H + + + P W E I SS +LS L Sbjct: 48 SNYPDEWVNIYKENNYQHIDPVVIIAFNKIAPFSW---DENLAINSSLKLSKIFNLSRKY 104 Query: 113 LPFAGIAFPVRLGFHKNGYVI------FTSEFLMLANEVIIEAHGACYQVITDFLELFKK 166 G F + + + ++E + + L+++ Sbjct: 105 NIINGFTFVLHDPNNNLAMLSIMLDEEKSNEIEENIESNKEKLQMLLISAHDKLISLYRE 164 Query: 167 RSSAARN--------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 S + RE L A G T +EIA LG+ TV ++G+ KL Sbjct: 165 MSQNKDEKIYNDKEIFSHRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGV 224 Query: 219 VNRIQAIAKAIRFGYI 234 +N AI I I Sbjct: 225 LNAKHAIRLGIELQLI 240 >gi|258651012|ref|YP_003200168.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554237|gb|ACV77179.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 222 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 4/112 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA----CYQVITDFLELFKKRSSAARNLTERETSCL 182 GYV+ + L + + G L A + LT RE L Sbjct: 111 GARGYVVKDVDTSALIRAIRDISRGGSAFDARSAAAMVRGLHAGPVDADKKLTSREQEVL 170 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G ++ +I +KL +S TV ++G+ KL R +A+ A + G I Sbjct: 171 ELLSRGMSNVQIGKKLFISDTTVKFHVGNILRKLGVSRRAEAVHLAGKMGLI 222 >gi|228940289|ref|ZP_04102860.1| Two-component protein Kinase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973205|ref|ZP_04133794.1| Two-component protein Kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982224|ref|ZP_04142510.1| Two-component protein Kinase [Bacillus thuringiensis Bt407] gi|228777511|gb|EEM25792.1| Two-component protein Kinase [Bacillus thuringiensis Bt407] gi|228786401|gb|EEM34391.1| Two-component protein Kinase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819415|gb|EEM65469.1| Two-component protein Kinase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 592 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETPQSKATAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 532 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|227834277|ref|YP_002835984.1| two-component response regulator ChrA [Corynebacterium aurimucosum ATCC 700975] gi|262183011|ref|ZP_06042432.1| two-component response regulator ChrA [Corynebacterium aurimucosum ATCC 700975] gi|227455293|gb|ACP34046.1| two-component response regulator ChrA [Corynebacterium aurimucosum ATCC 700975] Length = 206 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V+ A G L ++ + L+ RE LQ Sbjct: 97 AGALGYLLKDAPEDTLHTAVLDTAAGKRTLAPEVTNLLAERLAQPETALSPRELEILQAL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++++IA++L +S TV +L KL R A++ A I Sbjct: 157 STGASNKQIAQRLFISEATVKTHLIHVYQKLGVETRTAAVSAARERKLI 205 >gi|295130489|ref|YP_003581152.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|291375667|gb|ADD99521.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|313772396|gb|EFS38362.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313809915|gb|EFS47636.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313830246|gb|EFS67960.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834047|gb|EFS71761.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|314973252|gb|EFT17348.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314975927|gb|EFT20022.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314984055|gb|EFT28147.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|315096164|gb|EFT68140.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|327326081|gb|EGE67871.1| two-component system response regulator [Propionibacterium acnes HL096PA2] gi|327446037|gb|EGE92691.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327447984|gb|EGE94638.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|328760418|gb|EGF73986.1| two-component system response regulator [Propionibacterium acnes HL099PA1] Length = 237 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARNLT 175 L +G+++ ++ L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|171909690|ref|ZP_02925160.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 212 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 6/110 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFK---KRSSAARNLTER 177 L +GY++ +S L + G + ++ F+ K + L+ R Sbjct: 97 LKAGASGYLVKSSAPEKLFEAIRDVHSGGAQFSAHIARRVVQYFRGPTKPVDESEKLSPR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 E ++L GY +EIA+KLG+ TV Y+ + VKL NR +A+AK Sbjct: 157 EGEVIELLASGYIYKEIADKLGIGTETVRTYVKNICVKLRVKNRTEAVAK 206 >gi|295402188|ref|ZP_06812146.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] gi|294975779|gb|EFG51399.1| two component transcriptional regulator, LuxR family [Geobacillus thermoglucosidasius C56-YS93] Length = 211 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTE 176 L NG+++ T+E L + G +++ L+ K+ L+ Sbjct: 94 LKDGANGFLLKTAEQQKLIQAIYSCMKGGMTIHEDVAAKMVPKLLQ-KSKQVRVDIPLSP 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE +L G+G T++EIA +L LS+ TV ++ KL +R Q AI+ Sbjct: 153 RELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIKH 207 >gi|288555019|ref|YP_003426954.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288546179|gb|ADC50062.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 199 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ S LA+ + I G EL LT RE ++L Sbjct: 94 AEVSGYLLKDSPSEELASSIRIIMDGRRIYA----PELIDLAYDNKNPLTNREKQVMELI 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G ++ EIA +L L+ TV Y+ KLD NRI+AI++ G+ Sbjct: 150 AEGKSTNEIASELYLTNGTVRNYISVILDKLDVGNRIEAISRFKEKGW 197 >gi|229030955|ref|ZP_04186971.1| Two-component protein Kinase [Bacillus cereus AH1271] gi|228730302|gb|EEL81266.1| Two-component protein Kinase [Bacillus cereus AH1271] Length = 592 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETPQSKATAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 532 TAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|229046883|ref|ZP_04192515.1| Two-component protein Kinase [Bacillus cereus AH676] gi|228724428|gb|EEL75753.1| Two-component protein Kinase [Bacillus cereus AH676] Length = 592 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETPQSKATAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 532 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|183983931|ref|YP_001852222.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] gi|183177257|gb|ACC42367.1| two-component transcriptional regulatory protein [Mycobacterium marinum M] Length = 218 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA--RNLTE 176 GY++ ++ LA+ V A G V+ ++ + + S+ +LTE Sbjct: 100 AGATGYLVKSASKAELADAVRATAAGRAVFTPSLAGLVLGEYRRIAQTADSSQDRPSLTE 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+ G ++++IAEKL LS TV ++ + KL NR++ AI G Sbjct: 160 RETEILRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELTRYAIEHGL 216 >gi|297529073|ref|YP_003670348.1| LuxR family transcriptional regulator [Geobacillus sp. C56-T3] gi|297252325|gb|ADI25771.1| transcriptional regulator, LuxR family [Geobacillus sp. C56-T3] Length = 500 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 39/65 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +L+ RE L+L +G ++ E A +L LS +TV Y+ + K++A NR +AI KAI Sbjct: 436 PMPHLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAI 495 Query: 230 RFGYI 234 R G I Sbjct: 496 RDGII 500 >gi|312111451|ref|YP_003989767.1| LuxR family transcriptional regulator [Geobacillus sp. Y4.1MC1] gi|311216552|gb|ADP75156.1| two component transcriptional regulator, LuxR family [Geobacillus sp. Y4.1MC1] Length = 211 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTE 176 L NG+++ T+E L + G +++ L+ K+ L+ Sbjct: 94 LKDGANGFLLKTAEQQKLIQAIYSCMKGGMTIHEDVAAKMVPKLLQ-KSKQVRVDIPLSP 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE +L G+G T++EIA +L LS+ TV ++ KL +R Q AI+ Sbjct: 153 RELMIAKLVGEGKTNKEIAAELHLSIGTVKNHITQILQKLQLRDRTQLAIYAIKH 207 >gi|239979247|ref|ZP_04701771.1| putative two-component system response regulator [Streptomyces albus J1074] Length = 227 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------------KKRSSAA 171 L +G+++ S L + V + HG + F + Sbjct: 99 LHAGASGFLLKDSPPASLVSAVRVI-HGGNALLDPAVTRRFIEDIVRRRPRPRRDPRLQL 157 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RET L+L G ++ EIAE+L L+ TV ++ KL +R QA+ A Sbjct: 158 NGLTPRETEVLELVARGLSNLEIAEQLVLAEQTVKTHISRILSKLGIRDRAQAVIAAYES 217 Query: 232 GYI 234 G + Sbjct: 218 GLV 220 >gi|261407693|ref|YP_003243934.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261284156|gb|ACX66127.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 220 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 16/125 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLEL---------FKKRSS 169 GY++ E L + G A ++T + ++ Sbjct: 96 AGARGYLLKDIEPEELVAGIRRVFQGQVELHPDAAGLLMTHVTSPAGEDEANGSSHQEAA 155 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE LQL G + EI+E L ++ TV ++ KL +R QA A+ Sbjct: 156 QLDKLTRREQEVLQLIASGMNNREISEALYITEKTVKTHVSHLLDKLGVADRTQAAIYAL 215 Query: 230 RFGYI 234 + G + Sbjct: 216 KHGIV 220 >gi|71737969|ref|YP_274134.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|257484378|ref|ZP_05638419.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627275|ref|ZP_06460229.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289650435|ref|ZP_06481778.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|298486449|ref|ZP_07004509.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71558522|gb|AAZ37733.1| DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. phaseolicola 1448A] gi|298158926|gb|EFH99986.1| DNA-binding response regulator, LuxR family [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320324828|gb|EFW80900.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. B076] gi|320329194|gb|EFW85191.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330869470|gb|EGH04179.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330989303|gb|EGH87406.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. lachrymans str. M301315] gi|331013208|gb|EGH93264.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 222 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 7/118 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTER 177 GY++ + + + A G +++ E ++ +LT R Sbjct: 98 SAGAVGYLLKDASRDEVIAGLQRVARGEEALNSTVSARLLRRMTERNTSGAALPESLTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L L G+++ EI EKLG++ T A++ KL A +R QA + + G + Sbjct: 158 ERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLVS 215 >gi|269138467|ref|YP_003295167.1| two-component transcriptional regulator, LuxR family [Edwardsiella tarda EIB202] gi|267984127|gb|ACY83956.1| two-component transcriptional regulator, LuxR family [Edwardsiella tarda EIB202] gi|304558493|gb|ADM41157.1| Nitrate/nitrite response regulator protein [Edwardsiella tarda FL6-60] Length = 215 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE L ++ A G + + +L + + +LTERE L Sbjct: 104 DAGADGYLLKDSEPEALLAQIRQAAEGRSVFSESVLAYLSTRSEIADPLADLTERELDVL 163 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 164 QEVARGMSNKQIAAQLHISEETVKVHIRNLLRKLNVRSRVAATV 207 >gi|269794179|ref|YP_003313634.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269096364|gb|ACZ20800.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 236 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 14/122 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--------------RSSAAR 172 +G+++ + + + G + L + ++SA Sbjct: 111 GASGFLLKDAPPEEMLAAIRTVHSGDAVIAPSTTRRLLDRLVTTLPEEQLVDSGQASAVD 170 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE L L G ++EIA L ++ T+ ++G KL A +R+QA+ A G Sbjct: 171 SLTEREREVLVLMARGRANQEIASDLFVAEATIKTHVGRILSKLGARDRVQAVVTAYETG 230 Query: 233 YI 234 + Sbjct: 231 LV 232 >gi|297201415|ref|ZP_06918812.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197713823|gb|EDY57857.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARN--- 173 L +G+++ L + + A +++ F + ++ Sbjct: 95 LKAGASGFMLKDVPPGELLTAIRSVHSGDAVVAPSTTRRLLDRFAPMLPTTGKEPQHKEL 154 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 ERLTGREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|118473768|ref|YP_890456.1| two-component system, regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118175055|gb|ABK75951.1| two-component system, regulatory protein [Mycobacterium smegmatis str. MC2 155] Length = 216 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCL 182 GYV+ + L + + G + + R+ LT+RE L Sbjct: 105 AGARGYVVKDVDTTELVRAIRAISSGDSAFDSRSAAAVVRSLSGRTEPREQLTDREIEVL 164 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G ++ +I EKL +S T ++ + KLD R +A+ A + G I Sbjct: 165 RLLAAGLSNNKIGEKLFISATTAKFHVSNIMRKLDVSRRAEAVYAASKRGLI 216 >gi|23098617|ref|NP_692083.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776844|dbj|BAC13118.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 209 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 5/120 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFK-KRSSAARNL 174 FP + Y++ TS +AN + A G +V + + F+ ++ +L Sbjct: 90 VFPA-IEAGAFSYILKTSTANEIANAIKKAASGENVIEPKVASKMMTNFQSQKKKLHDDL 148 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L G+G T++EI EKL + V TV ++ + KLD +R QA R + Sbjct: 149 TEREREVLLCIGEGLTNQEIGEKLYIGVKTVKTHVSNILSKLDVHDRTQAAVYVHRNKLL 208 >gi|71736138|ref|YP_274051.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. phaseolicola 1448A] gi|71556691|gb|AAZ35902.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 240 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 70/182 (38%), Gaps = 16/182 (8%) Query: 63 DIPNILIETY-------GDDFLFHFNSGLLPIIWQS-IQEETVIESSGQLSVRLEGGLLP 114 ++ + + Y D + + + L + WQ ++ V ++ V E LLP Sbjct: 64 NVDDAWGKAYRQREFITQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVVTCE--LLP 121 Query: 115 FAGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 A H G TS + + E ++ + + +R Sbjct: 122 ----AISYGYMNHCRGADSVTSVCTLGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSR 177 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ G Sbjct: 178 GLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRG 237 Query: 233 YI 234 I Sbjct: 238 LI 239 >gi|282864894|ref|ZP_06273948.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560319|gb|EFB65867.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 210 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 51/109 (46%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G L + + A+ LT+RE LQL Sbjct: 100 AGAGGYLLKDAPPQELAAAVRTAAAGRSALAPAVAHRLMDRMRTPAQALTKRELEVLQLV 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G ++++I+++L LS TV ++L KL +R A+A A I Sbjct: 160 GEGLSNQQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 208 >gi|302561410|ref|ZP_07313752.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302479028|gb|EFL42121.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 188 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 5/114 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERE 178 L GYV + LA + G L + + LTERE Sbjct: 72 LRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQAEVAGALLSQEEAGPGTGRAGALTERE 131 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG + EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 132 REVLGLIADGRANREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 185 >gi|302526068|ref|ZP_07278410.1| two component system DNA binding response regulator [Streptomyces sp. AA4] gi|302434963|gb|EFL06779.1| two component system DNA binding response regulator [Streptomyces sp. AA4] Length = 205 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G L + + A L+ RE L L Sbjct: 95 AGATGYLLKDAPPEDLAAAVRNAAAGQTVLAPAVAHRLMNRMRTPAAALSPREIEVLGLV 154 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ EI+++L LS TV ++L KL +R A+A G I Sbjct: 155 ADGLSNLEISKRLFLSQATVKSHLVHIYAKLGVDSRTAAVAAGKARGLI 203 >gi|239942985|ref|ZP_04694922.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989445|ref|ZP_04710109.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291446458|ref|ZP_06585848.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291349405|gb|EFE76309.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 219 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 52/120 (43%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA--RNL 174 L +G+++ + L V AHG Q+I +F+ RSS R+L Sbjct: 100 LRVGASGFLLKDASPRQLDEAVRQVAHGEALLSPSVTRQLIQEFVRRPAVRSSTTDLRSL 159 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE +L GY + EIA KL L T+ +++ KL +R Q + A G + Sbjct: 160 TGREIDVFRLLVQGYGNAEIARKLVLGESTIKSHVQHLYRKLGVRDRAQVVIFAYENGLV 219 >gi|254411603|ref|ZP_05025379.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181325|gb|EDX76313.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 225 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA--ARNLTERE 178 L + Y + S L + A GA Y Q+ L+ S NL++RE Sbjct: 110 LSSGADAYCVKGSSVERLLQAIAAAAEGATYLDPQIGRQVLKHLSPPSPTGNVSNLSQRE 169 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G ++ EIA KL LS +TV ++ KL +R+QA A+R G + Sbjct: 170 LEVLKLIVEGNSNPEIAAKLYLSANTVKTHVRGIMNKLSVDDRVQAAVVALRSGIV 225 >gi|186681008|ref|YP_001864204.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463460|gb|ACC79261.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 225 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN--LTERE 178 L + Y I + L + + GA Y Q+ ++ K + + N L+ RE Sbjct: 110 LSSGADAYCIKGASVERLLSAIAAAVDGAAYLDPQIARRVIDNLKPPAPTSNNANLSARE 169 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L DG ++ EIAEKL LS +T+ ++ KL +R+QA A+R G + Sbjct: 170 LEVLKLMVDGLSNPEIAEKLYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRSGLV 225 >gi|330467467|ref|YP_004405210.1| LuxR family two component transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810438|gb|AEB44610.1| LuxR family two component transcriptional regulator [Verrucosispora maris AB-18-032] Length = 226 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNL-- 174 L +G+++ + L + + + A G ++I F +A L Sbjct: 102 LQAGASGFLLKDAGPAELLHAIRVVAAGDALLAPRITRRLIGQFTARRTAAGAAQERLAV 161 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L L G G ++EI +L LS T ++ A KL A +R Q + A + G Sbjct: 162 LTDREREVLALVGRGLNNDEIGGELFLSPATARTHVSRAMAKLGARDRAQLVVIAYQTGL 221 Query: 234 IC 235 + Sbjct: 222 VS 223 >gi|314934012|ref|ZP_07841377.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] gi|313654162|gb|EFS17919.1| DNA-binding response regulator VraR [Staphylococcus caprae C87] Length = 207 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + +G + +E K+ L++RE L+ Sbjct: 98 GADGYEMKDVEPQKLIETIHKVLNGERIIHPEAKSVIEAVSKKPHFTNKLSKREVEVLRE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIA+ L +S T+ ++ KL +R QA A+ I Sbjct: 158 MVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENKLI 207 >gi|297191011|ref|ZP_06908409.1| two component system DNA binding response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297150723|gb|EDY65386.2| two component system DNA binding response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 213 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 49/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G L + + A LT+RE LQL Sbjct: 103 AGAAGYLLKDAPPEELAAAVRTAAAGRSALAPAVAHRLMDRMRTPAEALTKRELEVLQLV 162 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GDG ++ +I+++L LS TV ++L KL +R A+A A I Sbjct: 163 GDGLSNLQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 211 >gi|239933481|ref|ZP_04690434.1| two component system DNA binding response regulator [Streptomyces ghanaensis ATCC 14672] gi|291441852|ref|ZP_06581242.1| two component system DNA binding response regulator [Streptomyces ghanaensis ATCC 14672] gi|291344747|gb|EFE71703.1| two component system DNA binding response regulator [Streptomyces ghanaensis ATCC 14672] Length = 211 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G T L + + LT RET L L Sbjct: 101 AGATGYLLKDAPPEDLAAAVRTAAAGRTTLAPTVADRLMNRLRTPDTALTRRETEVLALV 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +++ + +L L+ TV ++L KL+ +R A+A A G I Sbjct: 161 ADGLSNQAVGNRLHLTEGTVKSHLARIYAKLNVDSRTAAVATATDLGLI 209 >gi|158317584|ref|YP_001510092.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158112989|gb|ABW15186.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 237 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 55/120 (45%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS----AARNL 174 GY++ +A ++ +G +++++F + K + L Sbjct: 115 AGAMGYLLKEISIDEVAADIRAVYNGQSLISPSMASKLLSEFAAMIKTKDDRPQLPTPRL 174 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + +IA++L +S +TV ++ + KL +R++A+ A+R + Sbjct: 175 TDREMEVLRLVAKGLNNRDIAKQLYISENTVKNHIRNILEKLQLHSRMEAVVYAVREKLL 234 >gi|229179482|ref|ZP_04306835.1| Two-component protein Kinase [Bacillus cereus 172560W] gi|228603983|gb|EEK61451.1| Two-component protein Kinase [Bacillus cereus 172560W] Length = 592 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S AA L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETPESKAAAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ +A+ G I Sbjct: 532 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQRALEIGII 591 >gi|149923436|ref|ZP_01911840.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] gi|149815688|gb|EDM75215.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] Length = 220 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 52/119 (43%), Gaps = 9/119 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL-------ELFKKRSSAARNLTE 176 +GY++ S L + A G + + L K+ A +LT+ Sbjct: 99 AGASGYLLKGSGLSDLVTAIREVAGGNAFFSPTVAKILLQESRGERSVKEAPDPADSLTK 158 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L L G+G +S EIA+ LGLSV T+ + G KL N + +AIR G + Sbjct: 159 REREVLTLVGEGKSSPEIAKILGLSVKTIEGHRGRIMAKLGVHNVAGLVRQAIRIGLVS 217 >gi|294631853|ref|ZP_06710413.1| two-component system, regulatory protein [Streptomyces sp. e14] gi|292835186|gb|EFF93535.1| two-component system, regulatory protein [Streptomyces sp. e14] Length = 229 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 29/127 (22%), Positives = 47/127 (37%), Gaps = 13/127 (10%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSS------- 169 FP L GY+ + + V G + LE + Sbjct: 99 FPA-LRAGARGYLTKDAGGDEIVRAVESVLSGEAGLAPSIQRRLLEHLSEPEPEPWATPA 157 Query: 170 --AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LT RE + L +G +++EIA +L +S TV ++ + K +R QA+ Sbjct: 158 DQAPDGLTARECEVVVLIAEGLSNQEIARRLHVSTATVKTHINNLFAKTGLKDRAQAVRY 217 Query: 228 AIRFGYI 234 A G + Sbjct: 218 AYAKGLV 224 >gi|325927296|ref|ZP_08188550.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|325542297|gb|EGD13785.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 200 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + + G +VI L L A L+ERE + L+ Sbjct: 94 LDAGVAGYLLKDAPAEQLVDALRQVHRGG--RVIDPQLAL--DAWVEADPLSERERTVLR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG+G ++ EIA++L LS TV YL KL NRI+A A + G++ Sbjct: 150 LAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200 >gi|228990919|ref|ZP_04150883.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] gi|228768856|gb|EEM17455.1| Two component transcriptional regulator, LuxR [Bacillus pseudomycoides DSM 12442] Length = 191 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 8/121 (6%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR 172 FP L YV+ E L V G +V+ + + Sbjct: 63 FPA-LRAGAISYVLKDIEPNQLVETVRRGVQGESIMHPRVAARVVNEIRATKQASPDPFS 121 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L+L G T+ EIAE L +S TV ++ + KL ++R +A A G Sbjct: 122 ELSERELEVLRLIARGLTNAEIAESLFISGKTVKGHVSNILSKLHMLDRTKAAVFAWEQG 181 Query: 233 Y 233 + Sbjct: 182 F 182 >gi|229085213|ref|ZP_04217456.1| DNA-binding response regulator [Bacillus cereus Rock3-44] gi|228698080|gb|EEL50822.1| DNA-binding response regulator [Bacillus cereus Rock3-44] Length = 211 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTER 177 L +GY + + L +I G + L + +++ + LT+R Sbjct: 95 LEAGADGYQLKEVQPDQLVASIIAVYQGNANFHPKVTPALLGILSVKEEKQDSFSMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+ G +++EIA +L ++ TV ++ + KL+ +R QA A++ G + Sbjct: 155 EKEVLREITKGRSNKEIAAELHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKNGVV 211 >gi|261418220|ref|YP_003251902.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC61] gi|319767820|ref|YP_004133321.1| LuxR family transcriptional regulator [Geobacillus sp. Y412MC52] gi|261374677|gb|ACX77420.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC61] gi|317112686|gb|ADU95178.1| transcriptional regulator, LuxR family [Geobacillus sp. Y412MC52] Length = 500 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 39/65 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +L+ RE L+L +G ++ E A +L LS +TV Y+ + K++A NR +AI KAI Sbjct: 436 PMPHLSPREIEVLKLVAEGASTYEAARRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAI 495 Query: 230 RFGYI 234 R G I Sbjct: 496 RDGII 500 >gi|218898278|ref|YP_002446689.1| Two-component protein Kinase [Bacillus cereus G9842] gi|218542184|gb|ACK94578.1| Two-component protein Kinase [Bacillus cereus G9842] Length = 595 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 475 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETPQSKATAYEL 534 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 535 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEIGII 594 >gi|116620723|ref|YP_822879.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116223885|gb|ABJ82594.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 216 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRS--SAARNL 174 L Y++ S L VI + G + ++ D++ ++R + L Sbjct: 96 LKAGARAYLLKDSAEHDLIAAVIAVSEGKAFFSPAISKMLVEDYMRQMQERQIEDSYELL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL +G ++E+A L LS++TV + G+ KL+ + + I AIR G I Sbjct: 156 TTREREVLQLLAEGKNNKEVAAILNLSLYTVETHRGNILQKLNLHSGAELILYAIRKGVI 215 Query: 235 C 235 Sbjct: 216 S 216 >gi|319788214|ref|YP_004147689.1| LuxR family transcriptional regulator [Pseudoxanthomonas suwonensis 11-1] gi|317466726|gb|ADV28458.1| two component transcriptional regulator, LuxR family [Pseudoxanthomonas suwonensis 11-1] Length = 200 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 55/111 (49%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + LA + G + I L L + + A L ERE L+ Sbjct: 94 LDAGVRGYLLKDAPPERLAEALRTVHRGG--RAIDPELAL--EAWTEADPLNERERQVLR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG+G +S IAE+LGLS TV YL A KL A NR++A A + G + Sbjct: 150 LAGEGLSSTRIAERLGLSHGTVRNYLSEAIGKLGAANRVEAHRIARQRGLL 200 >gi|312876261|ref|ZP_07736247.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor lactoaceticus 6A] gi|311796907|gb|EFR13250.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor lactoaceticus 6A] Length = 215 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 11/111 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--------AR 172 L F +GY++ +S+ + + + G ++ KK +S+ Sbjct: 95 LSFGADGYILKSSDAQHIIDTIYAVLDGKVVFDREIALFISNTLKKEASSFSGNVNVLKN 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE ++L GY+++EIA L +S TV Y+ S KL NR Q Sbjct: 155 ELTERELDIVKLIAQGYSNKEIANLLFISEGTVRNYISSILQKLQLQNRTQ 205 >gi|312792317|ref|YP_004025240.1| two component transcriptional regulator, luxr family [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179457|gb|ADQ39627.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor kristjanssonii 177R1B] Length = 215 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 11/111 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--------AR 172 L F +GY++ +S+ + + + G ++ KK +S+ Sbjct: 95 LSFGADGYILKSSDAQHIIDTIYAVLDGKVVFDREIALFISNTLKKEASSFSGNVNVLKN 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE ++L GY+++EIA L +S TV Y+ S KL NR Q Sbjct: 155 ELTERELDIVKLIAQGYSNKEIANLLFISEGTVRNYISSILQKLQLQNRTQ 205 >gi|295691166|ref|YP_003594859.1| LuxR family transcriptional regulator [Caulobacter segnis ATCC 21756] gi|295433069|gb|ADG12241.1| transcriptional regulator, LuxR family [Caulobacter segnis ATCC 21756] Length = 249 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 68/168 (40%), Gaps = 9/168 (5%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG---LLPFAGIAFPVRLGFHKNGY 131 F+ P + + + ++ + + I P L G Sbjct: 78 PFILAARYTAEPFFYHQGRFASWRPMPRLETIEVADAAESFGVRSAIIAPAYLTGGVIGA 137 Query: 132 VIFTSEFL-----MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 V++ + L E HGA ++++ + + + + LT+RE CL+ A Sbjct: 138 VVWAAANSVENVPALYAARADELHGAALRLVSAYRD-GQDDDAPPVRLTKREIQCLKWAA 196 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T +IA+ +G++ TV ++ +A +KL R QAI +A GYI Sbjct: 197 AGKTDADIAQIIGIAGPTVRFHVQNAALKLRVAGRAQAIHRATGLGYI 244 >gi|237797654|ref|ZP_04586115.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020504|gb|EGI00561.1| regulatory protein, LuxR [Pseudomonas syringae pv. oryzae str. 1_6] Length = 240 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 69/183 (37%), Gaps = 16/183 (8%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 ++ + E Y D + ++ L + WQ + I + + +V L Sbjct: 63 SNVDDAWGEAYRRHELIRHDPVIRCYHHELGFVNWQDAFRQYPISACYKKAVDACELLPA 122 Query: 115 FA-GIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 + G H G TS + + E ++ + + ++ Sbjct: 123 VSYGYT------NHCRGADSVTSVCTLGDIERAISAEQKYLISSLMPVLHSVARGLKFSS 176 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 177 RGLTHRELEVLQWARDGKTAWEISMIREVSESTVKFHLKTIYSKLGVANRAQAVGEALCR 236 Query: 232 GYI 234 G I Sbjct: 237 GLI 239 >gi|271962958|ref|YP_003337154.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506133|gb|ACZ84411.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 234 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 12/117 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS-----AARN 173 GY++ + + V G ++IT+F + +K + Sbjct: 111 AGATGYLLKNVQLDEVPEAVRGVHEGQSLINPAMAAKLITEFANMSRKEAERPPQLPVPR 170 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE L+L G + EIA++L +S +TV ++ + KL +R++A+ A+R Sbjct: 171 LTDREMEVLRLVAKGMNNREIAKQLFISENTVKNHVRNILDKLQLHSRMEAVVYAVR 227 >gi|269127816|ref|YP_003301186.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268312774|gb|ACY99148.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 201 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 3/104 (2%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 +++ + LA + A G + + D F + ++A LT RE L+LAG+G + Sbjct: 101 FLLKGTSPDTLAGSLRRVAAG---ERVIDADLAFAELAAADSPLTPRELEVLRLAGEGAS 157 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +IA+ L L++ TV +L K+ A NR+ AI A G++ Sbjct: 158 VAQIADTLVLTIGTVRNHLSRINRKIGARNRVHAIRIAESAGWL 201 >gi|302531478|ref|ZP_07283820.1| two component system response regulator [Streptomyces sp. AA4] gi|302440373|gb|EFL12189.1| two component system response regulator [Streptomyces sp. AA4] Length = 225 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL---ELFKKRSSAARN 173 L +G+++ +E + L + + + A G ++I + + E + +SA R Sbjct: 97 LRAGASGFLLKDTEPVELLHALRVVAAGEALLAPTVTRRLIAEIVGRPEHRRIDTSAVRE 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +TERE L L G +++EIA L +S T ++ K+ A +R Q + A G Sbjct: 157 VTEREREVLALVAGGLSNDEIAAHLVISAATARTHVSRIMTKIGARDRAQLVVLAYESGL 216 Query: 234 IC 235 + Sbjct: 217 VT 218 >gi|315657926|ref|ZP_07910800.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] gi|315496962|gb|EFU85283.1| DNA-binding response regulator [Staphylococcus lugdunensis M23590] Length = 207 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + G + +E K+ L++RE L+ Sbjct: 98 GADGYEMKDVEPAKLIETIRRVLVGERIIHPEAKTVMEAVAKKPHYTNKLSKREIDVLRE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EIAE L +S T+ ++ KL +R QA A++ I Sbjct: 158 MVKGKTNREIAETLFVSEKTIKTHVSHIFNKLQVSDRTQAAIYAMQNNLI 207 >gi|47564405|ref|ZP_00235450.1| two-component protein Kinase [Bacillus cereus G9241] gi|47558557|gb|EAL16880.1| two-component protein Kinase [Bacillus cereus G9241] Length = 592 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETPQSKATAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 532 TAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|302337759|ref|YP_003802965.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Spirochaeta smaragdinae DSM 11293] gi|301634944|gb|ADK80371.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 886 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S L+ RE L+L GYT++EIAE+L +SV TV + + KL NR +A+ K Sbjct: 819 SCKPVTLSNRELMVLRLLARGYTNKEIAEELFISVRTVKWHTVNIYKKLGVKNRTEAVVK 878 Query: 228 AIRFGYI 234 A G I Sbjct: 879 ANISGII 885 >gi|260577934|ref|ZP_05845864.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] gi|258603954|gb|EEW17201.1| two component system response regulator [Corynebacterium jeikeium ATCC 43734] Length = 227 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 50/122 (40%), Gaps = 13/122 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSA----------AR 172 +G+++ ++ L + V A + L + + Sbjct: 96 AGASGFLLKDTDPEDLISAVRTVGDSAAVISPKATARLLRSIRMEQTPQRREPVELDLPD 155 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL G +++EIA+KL +S+ TV ++G K + +R+ A+ A + Sbjct: 156 PLTPRELEILQLIALGLSNQEIADKLYISLPTVKTHVGRVLTKTQSRDRVHAVLFAFKHH 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|222151813|ref|YP_002560973.1| two-component response regulator [Macrococcus caseolyticus JCSC5402] gi|222120942|dbj|BAH18277.1| two-component response regulator [Macrococcus caseolyticus JCSC5402] Length = 210 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 4/114 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETS 180 + +GY + SE L N + A G D +++ K + A L++RE Sbjct: 97 MDAGADGYEMKDSEPKALINTIKQIAAGEQI-FHPDVMKVRKSGMNLAHLRNPLSKRELE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T++EIAEKL +S TV ++ KL+ +R QA +++ I Sbjct: 156 VLKAMSEGLTNKEIAEKLFVSEKTVKTHVSHIFAKLEVGDRTQASMYGVKYKLI 209 >gi|148654958|ref|YP_001275163.1| response regulator receiver protein [Roseiflexus sp. RS-1] gi|148567068|gb|ABQ89213.1| response regulator receiver protein [Roseiflexus sp. RS-1] Length = 204 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 5/118 (4%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-----SAARNLTER 177 RL G + + LA + A G L L +R LT R Sbjct: 86 RLPLTAWGLLSHDAGAAELAAAIQAVAQGLIVFASELALRLLHRRPLSVAEPVGEPLTAR 145 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L+L G ++++IA+KL +S HTV +L S KL +R +A+ + R G I Sbjct: 146 ERDVLELVSQGLSNKQIAQKLQISEHTVKFHLSSLFAKLGVSSRTEAVNRGARQGIIT 203 >gi|311897337|dbj|BAJ29745.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 222 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAAR---N 173 L G+++ + L + V + A G VI+ ++E ++AA Sbjct: 95 LRAGAAGFLLKDTAPEQLVHAVRVLAAGGSVLSPSVARTVISGYVEGGAADTTAATLTGR 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G+G ++ EIA++L L TV ++ + KL A NR+QA A R G Sbjct: 155 LTGRELDVLALLGEGLSNAEIADRLFLGTGTVKDHISAILGKLGAANRVQAAVIAHRAGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|282861721|ref|ZP_06270785.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563537|gb|EFB69075.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 229 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKK---RSSAARN 173 L +G+++ + L V + A G ++I DF RS AR Sbjct: 99 LRVGASGFLLKDAPPADLIAAVRVVAAGDALLAPSVTRRLIADFARQRPSGAFRSGPARR 158 Query: 174 L---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L T RET L+L G +++EIA +L ++ TV ++ K D +R QA+ A Sbjct: 159 LKGLTPRETEVLELVARGLSNQEIAGRLVVAEQTVKTHVSRILAKADLRDRAQAVIFAYE 218 Query: 231 FGYI 234 G + Sbjct: 219 SGLV 222 >gi|229145796|ref|ZP_04274176.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24] gi|296503725|ref|YP_003665425.1| two-component protein kinase [Bacillus thuringiensis BMB171] gi|228637627|gb|EEK94077.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24] gi|296324777|gb|ADH07705.1| two-component protein kinase [Bacillus thuringiensis BMB171] Length = 592 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETPQSKATAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 532 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|289679770|ref|ZP_06500660.1| LuxR response regulator receiver [Pseudomonas syringae pv. syringae FF5] Length = 188 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 7/118 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTER 177 GY++ + + + + A G +++ E ++ LT R Sbjct: 64 SAGAVGYLLKDASRDEVIDGLQRVARGEEALNSAVSARLLRRMTERNTSGAALPETLTPR 123 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L L G+++ EI EKLG++ T A++ KL A +R QA + + G + Sbjct: 124 ERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLVS 181 >gi|302522019|ref|ZP_07274361.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302430914|gb|EFL02730.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 150 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTERE 178 GY++ + L V A G +++T + L+ RE Sbjct: 28 AGATGYLLKDAPREELFAAVRATADGRSVLAPAVASRLVTSLRAPGADETPPRTPLSARE 87 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ EIA L LS TV +L KL +R A+A G + Sbjct: 88 REVLALVARGTSNREIARALFLSEATVKTHLTHLYAKLGVTDRAAAVATGYERGIL 143 >gi|254422719|ref|ZP_05036437.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196190208|gb|EDX85172.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 235 Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 38/66 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LTERE L+ G ++ +IAEKL ++V TV ++ + KL A +R QA +A+ Sbjct: 170 EAYPLTERELEILECIVSGCSNAQIAEKLFVTVGTVKTHVRNILNKLGASDRTQAAVRAL 229 Query: 230 RFGYIC 235 R G I Sbjct: 230 RAGLIS 235 >gi|320007637|gb|ADW02487.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 210 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 50/109 (45%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G L + + A+ LT RE LQL Sbjct: 100 AGAGGYLLKDAPPEELAAAVRTAAAGRSALAPAVAHRLMDRMRTPAQALTRRELEVLQLV 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G ++++I+++L LS TV ++L KL +R A+A A I Sbjct: 160 GEGLSNQQISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 208 >gi|199597520|ref|ZP_03210949.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] gi|199591543|gb|EDY99620.1| DNA-binding response regulator, CitB family (Rec-wHTH domains) [Lactobacillus rhamnosus HN001] Length = 202 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 NGY++ S L + G + ++ + LTERE + L Sbjct: 95 AAQVNGYLLKDSPSDDLIAVIRKVMTGQTVYAPELVANMI---TAESNPLTERELAVLGE 151 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G +S++IA L LS TV YL + KL NRI+AI A R ++ Sbjct: 152 VASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRNKWLA 202 >gi|229073471|ref|ZP_04206602.1| DNA-binding response regulator [Bacillus cereus F65185] gi|228709645|gb|EEL61688.1| DNA-binding response regulator [Bacillus cereus F65185] Length = 131 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII------EAHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ S + + + H + + + + K S LTER Sbjct: 12 LQAGADGYLLKDSSSNQVVAAIRMLYRGDSVIHPRMTKKLITYHQQKMKVESNENELTER 71 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIAE L +S TV ++ KL+ +R QA+ A+R + Sbjct: 72 EKEILFELVKGLSNKEIAEVLYISDKTVKIHINKIFKKLNVKSRSQAVIYAVRNQLV 128 >gi|256374666|ref|YP_003098326.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255918969|gb|ACU34480.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 209 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G + L ++ + L+ RE L+L Sbjct: 103 AGAVGYLLKDASPEDLVAAVRAAARGETVLAPSVAGRLVRRTPA----LSPREVEVLRLV 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G G ++ EI +L + TV +L KLD +R A+ A+R G + Sbjct: 159 GRGLSNAEIGRQLFIGEATVKTHLLRVFSKLDVSDRTAAVTTAMRLGLL 207 >gi|223043570|ref|ZP_03613615.1| two-component response regulator [Staphylococcus capitis SK14] gi|222443058|gb|EEE49158.1| two-component response regulator [Staphylococcus capitis SK14] Length = 207 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + +G + +E K+ L++RE L+ Sbjct: 98 GADGYEMKDVEPQKLIETIHKVLNGERIIHPEAKSVIETVSKKPHFTNKLSKREVEVLRE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIA+ L +S T+ ++ KL +R QA A+ I Sbjct: 158 MVKGKTNKEIAQTLFVSEKTIKTHVSHIFNKLQVTDRTQAAIYAMENKLI 207 >gi|271962079|ref|YP_003336275.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505254|gb|ACZ83532.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 212 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 18/155 (11%) Query: 96 TVIESSGQLSVRLEGGLLPFAGIAFPVR--------LGFHKNGYVIFTSEFLMLANEVII 147 V++ G L E GL P + V + +G++ + L + Sbjct: 58 PVLDGLGTLVRLAEHGLSPRVLVLTSVGDREDVAPAMRAGASGFLYKDVDPAALVQAIRA 117 Query: 148 EAHGACYQVITDFLELF---------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 HG + + E LT+RE L L G ++ EIA +L Sbjct: 118 V-HGGQVLLAPEAAEAMLSVPAPAPAPAEGRYVAPLTDREREVLTLIASGRSNREIAREL 176 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++ TV ++ + +KL +R QA A+R G Sbjct: 177 AVAEKTVKTHVSNVLMKLGVQDRTQAALYAVRNGL 211 >gi|302525783|ref|ZP_07278125.1| two-component system response regulator [Streptomyces sp. AA4] gi|302434678|gb|EFL06494.1| two-component system response regulator [Streptomyces sp. AA4] Length = 221 Score = 100 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKK---RSSAARNLTERETS 180 Y++ ++ +++ + V G Y + L + + R L+ RE Sbjct: 107 AGAQAYLLKSASPVVVTDGVRRVLEGGVYADPSVAPVLATGTRVAGTDNTPRELSAREVE 166 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQL DG +++EI E+L LS TV ++L KL +R Q +A A+R G I Sbjct: 167 VLQLVADGQSNKEIGEELSLSALTVKSHLSRIGRKLGTGDRAQMVALAMRAGVI 220 >gi|29830997|ref|NP_825631.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608111|dbj|BAC72166.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 216 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 53/122 (43%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNL-- 174 L +G+++ L + V + A G ++I D+ ++ + + L Sbjct: 94 LHAGASGFLLKDVRRDDLVHAVRVVAAGESLVAPSVARRLIADYTRRGRRTAPVSGRLDV 153 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L G ++ EIA + +S HTV ++G+ KL +R+QA+ A G Sbjct: 154 LTARERETLLHLAHGLSNAEIAAAMVVSEHTVKTHVGNVLSKLALRDRVQAVICAYETGL 213 Query: 234 IC 235 + Sbjct: 214 VS 215 >gi|319652400|ref|ZP_08006516.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] gi|317395862|gb|EFV76584.1| two-component system response regulator [Bacillus sp. 2_A_57_CT2] Length = 210 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSAARNLTE 176 L +GY++ + L + G +V+ ++ + +LT Sbjct: 94 LRIGVSGYILKNGDTDSLLRSIRSALKGGLSIEEGVAAKVVPQLMKQQDTKE-PDPSLTP 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + L+ G+G ++ EIAE+L +S TV KLD +R Q AIR + Sbjct: 153 RERAILKCIGEGLSNNEIAERLAISTGTVKNNTSQILTKLDLRDRTQLAIYAIRHNLV 210 >gi|228901714|ref|ZP_04065887.1| Two-component protein Kinase [Bacillus thuringiensis IBL 4222] gi|228857943|gb|EEN02430.1| Two-component protein Kinase [Bacillus thuringiensis IBL 4222] Length = 592 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETPQSKATAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 532 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|229162147|ref|ZP_04290117.1| Two-component protein Kinase [Bacillus cereus R309803] gi|228621304|gb|EEK78160.1| Two-component protein Kinase [Bacillus cereus R309803] Length = 557 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 437 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETPQSKATAYEL 496 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 497 TAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKEEAVQKALEIGII 556 >gi|221633789|ref|YP_002523015.1| response regulator uvrY [Thermomicrobium roseum DSM 5159] gi|221156063|gb|ACM05190.1| response regulator uvrY [Thermomicrobium roseum DSM 5159] Length = 221 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 10/127 (7%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK--KR 167 PV L +GYV +S L + + A G A ++ +L+ + + Sbjct: 91 RYLLPV-LQAGGSGYVRKSSLHTDLVEAIRLVARGEVFIDQAAARTLLQGYLDHARTGEV 149 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A+ L+ERE L+L GYT++EIA++L LS TV Y KL R + + Sbjct: 150 QDPAQLLSEREREVLRLTAAGYTAQEIADQLFLSPKTVETYRHRVMQKLGFSRRSELVRF 209 Query: 228 AIRFGYI 234 A+R G + Sbjct: 210 ALRIGLL 216 >gi|119714205|ref|YP_919347.1| response regulator receiver [Nocardioides sp. JS614] gi|119526114|gb|ABL79484.1| response regulator receiver [Nocardioides sp. JS614] Length = 216 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN-LT 175 L + +++ ++ L + + A G ++I F +A LT Sbjct: 94 LRAGASAFLLKDAKEDQLVAAIRVAADGGSLFSPSVTKRLIGRFAAPASAPVAADLPALT 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EI E+L +S HT ++ S KL R+QA+ A G + Sbjct: 154 NREREVWELVARGLSNAEITERLVISEHTTKTHVASILQKLHVRGRVQAVVLAYESGLV 212 >gi|313884941|ref|ZP_07818693.1| putative oxygen regulatory protein NreC [Eremococcus coleocola ACS-139-V-Col8] gi|312619632|gb|EFR31069.1| putative oxygen regulatory protein NreC [Eremococcus coleocola ACS-139-V-Col8] Length = 211 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 9/118 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-------ELFKKRSSAARNLTE 176 L Y++ TS +A + G QV+ D + ++ + LT Sbjct: 94 LEAGAKSYILKTSSAKEIAEAIRETYSGE--QVMDDEVNDILLAKDIKDSQPQLHDELTR 151 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L GY+++EIA++L +++ TV ++ + KL+ +R QA A + + Sbjct: 152 REYEVLLLIAKGYSNQEIADELFITLKTVKTHVSNILAKLEVSDRTQATIYAYQHKLV 209 >gi|308178463|ref|YP_003917869.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307745926|emb|CBT76898.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 221 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 15/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173 + +G+++ +E +LA V A G L+L ++ + AA++ Sbjct: 95 MDAGASGFLLKNAEPELLATAVHQVAAGNGLLSPEVTLKLIQRNTGAAQSTPSAAATAEA 154 Query: 174 -----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE L G ++EIA LGLS TV +L + KL +R+Q + A Sbjct: 155 QLLEALTERERQVLGELATGKNNQEIAAVLGLSEATVKTHLSNLLAKLHLRDRVQGVLFA 214 Query: 229 IRFGYI 234 R G I Sbjct: 215 HRAGLI 220 >gi|297561144|ref|YP_003680118.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845592|gb|ADH67612.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 218 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L +G+++ + + + + G A + + A LT+ Sbjct: 95 LRAGAHGFLLKRTPPEDILAAIRLAHRGDTLLFPTALRHLAATQPAAPTPAARAVATLTQ 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE+ L L G T+ EIA++L L TV ++ KL +R QA+ A G I Sbjct: 155 RESQTLTLMAQGLTNAEIADRLFLGTETVKTHVSHILTKLGVRDRTQAVIAAYDSGLI 212 >gi|223937482|ref|ZP_03629386.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223893833|gb|EEF60290.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 207 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 6/110 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA---RNLTER 177 L GY++ ++ + + + G Q+ ++ F++ L++R Sbjct: 95 LKAGAGGYLLKRADPADILSAIQDVKQGGAPMSSQIARRVVQSFREVPREPVKNEKLSQR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 E LQ GYT++EIAE+L +SV+TV +L KL +R +A+ K Sbjct: 155 EEEILQQLSKGYTTKEIAERLSVSVNTVRTHLQHIYEKLHVRSRTEAVVK 204 >gi|300789707|ref|YP_003769998.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799221|gb|ADJ49596.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 221 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKR--SSAARNL 174 L +G+++ +E L + V + A G ++I +F + S A L Sbjct: 95 LRAGASGFLVKDTEPEELIHAVRVVARGDALLAPSITRRLIAEFAARGTRPAASPALDRL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L L G +++EIA +L LS T ++ K +R Q + A G + Sbjct: 155 TDREREVLSLVAAGLSNDEIARELTLSPATAKTHVSRIMTKTGTHDRAQLVVLAYESGAV 214 Query: 235 C 235 Sbjct: 215 T 215 >gi|317126112|ref|YP_004100224.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315590200|gb|ADU49497.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 217 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 2/113 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSC 181 L G++ + LA V A G + + R A LT+RE Sbjct: 98 LEAGAVGFISKAAPGRELATGVRDAAAGRLVLQSQLLARVLRPRGPANDGVMLTDRERQV 157 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L DG + EIA++L +S TV + S KL A +R +A+ KA+ G I Sbjct: 158 LSLLVDGLHNREIADRLHISSRTVERHCDSLYGKLGAGSRTEAVVKALSHGII 210 >gi|88706477|ref|ZP_01104181.1| two component system response regulator [Congregibacter litoralis KT71] gi|88699189|gb|EAQ96304.1| two component system response regulator [Congregibacter litoralis KT71] Length = 225 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKR-------SSAARN 173 L +G+++ L V A G + +E F ++ + Sbjct: 96 LRAGASGFLLKDIPPEELVAAVRTVADGRALLGPDITRRLIEQFARQGGGSSALAERLER 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ GDG ++EIA LG+ TV ++ S KL +R QA+ A G Sbjct: 156 LTGREQEALRCVGDGMNNQEIARHLGIGPATVKTHVSSLLSKLGLRDRAQAVVFAYESGL 215 >gi|304399203|ref|ZP_07381070.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304353257|gb|EFM17637.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 215 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARNLTE 176 L +GY++ E L + A G ++ E ++ LT Sbjct: 98 LKRGADGYLLKDMEPEDLLKALHQAAAGQIVLSEALTPILVARLREAQPGQTRDINQLTR 157 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE LQL DG T++ IA KL +S TV ++ K++ +R++A A++ G Sbjct: 158 REREILQLISDGMTNKAIARKLDISESTVKVHVKYLLKKMNLKSRLEAAVWALQNGL 214 >gi|271963445|ref|YP_003337641.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506620|gb|ACZ84898.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 226 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 LG G+++ + + L + A GA Y +VIT R AAR Sbjct: 94 LGEGAGGFLLKSGDPRELLAGIHAVAEGAAYLSPRVAHRVITQLTGGRMTRVVAAREQVA 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G+G ++ +IA +L L TV A++ + +L A NR+QA A G Sbjct: 154 ALTPRERDVLALVGEGLSNGQIARRLYLVEGTVKAHVSAILTRLGARNRVQAAILAHEAG 213 Query: 233 YI 234 + Sbjct: 214 LL 215 >gi|197122287|ref|YP_002134238.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K] gi|220917070|ref|YP_002492374.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] gi|196172136|gb|ACG73109.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. K] gi|219954924|gb|ACL65308.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 218 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTE 176 L +GYV+ S LAN V G + + + +LT+ Sbjct: 97 LKAGVSGYVLKKSAGAELANAVRAVHRGGLVLDPEVARTAMEEAGPAAPGEADPYESLTD 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G +++E+A+ LG+SV T ++ KL NR + + AIR G I Sbjct: 157 REKQVLKLVAEGRSNKEVADVLGISVKTAMSHREHVMEKLGVHNRTELVRFAIRKGVI 214 >gi|225180998|ref|ZP_03734445.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225168195|gb|EEG76999.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 219 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK--KRSSAARNLTERETS 180 + YV+ + + G + ++ + L + K +S L++RE Sbjct: 98 AGASAYVLKNITSGNVIKAIKAVMQGESFIDPEITEQVMSLIRGEKAASQISGLSKREEE 157 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G+G T++EI +L LS TV ++ KL NR QA A R I Sbjct: 158 ILHLVGEGKTNKEIGRELFLSEKTVRNHVSRILDKLGVSNRSQAAAFMARRSVI 211 >gi|328463247|gb|EGF34958.1| LuxR family two-component response regulator [Lactobacillus rhamnosus MTCC 5462] Length = 201 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 3/110 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 NGY++ S L + G + ++ + LTERE + L Sbjct: 95 AAQVNGYLLKDSPSDDLIAVIRKVMTGQTVYAPELVANMV---TAESNPLTERELAVLGE 151 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S++IA L LS TV YL + KL NRI+AI A R ++ Sbjct: 152 VASGLSSKQIAASLFLSEGTVRNYLSAIFSKLGVHNRIEAIEMAKRNKWL 201 >gi|262164556|ref|ZP_06032294.1| transcriptional regulator LuxR family [Vibrio mimicus VM223] gi|262026936|gb|EEY45603.1| transcriptional regulator LuxR family [Vibrio mimicus VM223] Length = 224 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L G ++ EI+ L +S TV +L + KL+ NR AIAKAI G+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221 >gi|262173265|ref|ZP_06040942.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451] gi|261890623|gb|EEY36610.1| transcriptional regulator LuxR family [Vibrio mimicus MB-451] Length = 224 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L G ++ EI+ L +S TV +L + KL+ NR AIAKAI G+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221 >gi|258626786|ref|ZP_05721594.1| conserved hypothetical protein [Vibrio mimicus VM603] gi|258580926|gb|EEW05867.1| conserved hypothetical protein [Vibrio mimicus VM603] Length = 224 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L G ++ EI+ L +S TV +L + KL+ NR AIAKAI G+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221 >gi|239939391|ref|ZP_04691328.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 325 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSAARN--L 174 L +G+++ +E L V G ++I +F K+ ++AA L Sbjct: 200 LRNGASGFLVKDTEPEELLRAVRAVVGGDALLSPGVTRRLIAEFAARSKEPTAAASLALL 259 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE + L G G ++EEIA +L +S T ++ VKL A +R Q + A G + Sbjct: 260 TEREREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 319 >gi|126462491|ref|YP_001043605.1| two component LuxR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] gi|126104155|gb|ABN76833.1| two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides ATCC 17029] Length = 240 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 49/111 (44%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G V+ T+ L N + G Y + + + S+ LTE+E + Sbjct: 130 LATGASGIVLKTTPVRSLGNAIRFMHAGEHYLPLELARDRRQAPDSSGGRLTEKEMLVMS 189 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++EIA L L+ T+ ++ S KL A NR QA+ A G I Sbjct: 190 YLAEGRQNKEIAHGLNLAEPTIKMHVKSICKKLGATNRTQAVVTARNLGII 240 >gi|308070694|ref|YP_003872299.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] gi|305859973|gb|ADM71761.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Paenibacillus polymyxa E681] Length = 233 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 6/114 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK---RSSAARNLTERET 179 Y++ TS +A+ + A G QV + + F++ + A LT+RE Sbjct: 118 AGAFSYLLKTSRASEIADAIRAAARGQSVLESQVASKMMNRFRQPQAEAPAHTELTDREM 177 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G ++++IA++L + + TV ++ + KL +R QA A + G Sbjct: 178 EVLRLLAQGKSNQDIADELIIGIKTVKFHVTNLLAKLGVEDRTQAAIYAYKNGL 231 >gi|269793167|ref|YP_003318071.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100802|gb|ACZ19789.1| two component transcriptional regulator, LuxR family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 211 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 52/112 (46%), Gaps = 3/112 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + GYV+ +S ++ + + G ++ D S L++RE L Sbjct: 94 MRAGAKGYVLKSSPPEVICEAIRTVSRG---RLFLDLEASDLVSSGPTEELSQREREVLL 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 LA G S+EIA +L +S TV A+L S KL A N+ +A+ ++ G + Sbjct: 151 LASRGLASKEIASRLVISDRTVQAHLASIYGKLGARNKTEAMLLGLKHGILT 202 >gi|282861209|ref|ZP_06270274.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563867|gb|EFB69404.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 218 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERETSC 181 GY++ + L V A G V + + + + L+ RE Sbjct: 105 AGATGYLLKDAPREELFTAVRAAADGRTVLSPAVASRLITRVRTPAAPGGEALSTREREV 164 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ EIA L +S TV +L KL A +R A+A G + Sbjct: 165 LALVAKGTSNREIAAVLFISEATVKTHLTHVFAKLGAKDRAAAVALGYERGIL 217 >gi|269926224|ref|YP_003322847.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789884|gb|ACZ42025.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 218 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLEL-FKKRSSAARNLTERE 178 +GY+I + + G +V+ +F + +++ LT+RE Sbjct: 95 GASGYIIKNIDPDRFFELLEAAYQGEPALPPNLARKVLQEFAQPKIERKKRPDAELTDRE 154 Query: 179 TSCLQLAGDGYT-SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G T ++EIAE+L LS TV +L + KL NR Q +A A++ G I Sbjct: 155 REILELLVQGITSNKEIAERLFLSESTVKYHLHNILNKLHLQNRAQVVAYALQHGLI 211 >gi|258622070|ref|ZP_05717096.1| conserved hypothetical protein [Vibrio mimicus VM573] gi|258585394|gb|EEW10117.1| conserved hypothetical protein [Vibrio mimicus VM573] Length = 224 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L G ++ EI+ L +S TV +L + KL+ NR AIAKAI G+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221 >gi|297157797|gb|ADI07509.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 220 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNL-- 174 L +G+++ + V + A G ++I +F L Sbjct: 95 LRAGASGFLVKDMALDDILAAVRVVASGDALIAPSVTRRLIKEFAARPATTPPPRAELGG 154 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L L G G ++ EIA++L +SV T YL KLDA +R+Q + A G Sbjct: 155 ITDREREVLTLVGSGLSNAEIADRLCISVATAKTYLTRLLAKLDARDRVQLVILAYEAGL 214 Query: 234 IC 235 + Sbjct: 215 VA 216 >gi|229590397|ref|YP_002872516.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] gi|229362263|emb|CAY49165.1| putative two-component system response regulator [Pseudomonas fluorescens SBW25] Length = 217 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 7/117 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 GY++ + + + A G +++ E S +LT RE Sbjct: 99 AGAVGYLLKDASRNEVIEALQRVAAGEEALNTAVSARLLRRMTERNAAGSLPTEHLTPRE 158 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L +G ++ +I E LG++ T A++ KL A +R QA + I G + Sbjct: 159 RQVLGLVANGMSNRQIGEHLGITTGTAKAHVERVIGKLGAADRTQAAVRGIALGLVT 215 >gi|229000917|ref|ZP_04160386.1| Response regulator receiver [Bacillus mycoides Rock3-17] gi|228758834|gb|EEM07909.1| Response regulator receiver [Bacillus mycoides Rock3-17] Length = 224 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 14/123 (11%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFK-------KRSSAA 171 GY++ ++ L + V GA Q + + K SS Sbjct: 101 AGAAGYLLKDTQTKELLDGVRSIQRGATLYNSMTAKQALAKIINSRDNISTNQPKASSFI 160 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE LQL G ++EIA L +S V ++ + KL+ +R QA+ I Sbjct: 161 EPLTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQAVVLGICM 220 Query: 232 GYI 234 + Sbjct: 221 QLV 223 >gi|229008966|ref|ZP_04166312.1| Response regulator receiver [Bacillus mycoides Rock1-4] gi|228752300|gb|EEM01982.1| Response regulator receiver [Bacillus mycoides Rock1-4] Length = 215 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 14/123 (11%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFK-------KRSSAA 171 GY++ ++ L + V GA Q + + K SS Sbjct: 92 AGAAGYLLKDTQTKELLDGVRSIQRGATLYNSMTAKQALAKIINSRDNISTNQPKASSFI 151 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE LQL G ++EIA L +S V ++ + KL+ +R QA+ I Sbjct: 152 EPLTDREIEILQLIAYGKKNKEIANILYISEGIVKTHVHNINQKLEVTDRTQAVVLGICM 211 Query: 232 GYI 234 + Sbjct: 212 QLV 214 >gi|297198347|ref|ZP_06915744.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714401|gb|EDY58435.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 209 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 4/112 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCL 182 GY++ LA V A G V ++ + R R L+ RET+ L Sbjct: 98 AGAAGYLLKDLPRAELARSVRAAARGETVLAPTVAARLVDQLRTRPERPR-LSARETAVL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L DG T+ EI +L + TV +L KL +R A+ A+RFG + Sbjct: 157 RLVADGCTNAEIGRRLYIGESTVKTHLLRVFGKLGVDDRTAAVTSAMRFGLL 208 >gi|188533099|ref|YP_001906896.1| Transcriptional activator protein [Erwinia tasmaniensis Et1/99] gi|188028141|emb|CAO95998.1| Transcriptional activator protein [Erwinia tasmaniensis Et1/99] Length = 240 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 73/230 (31%), Gaps = 19/230 (8%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELH--NYDLDSGDIPNILIETYGDDFLFH 79 +I +++A L A ++ + C NY + Y D + Sbjct: 9 DIISKQLEAALSDLGEFIWAYVVLSKKDMSCIFGVTNYPGEWVKQYREKGLQYTDPVVIT 68 Query: 80 FNSGLLPIIWQS-IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT--S 136 + L P W + + S E G G F + + + FT Sbjct: 69 SLNRLTPFAWDENLLAGSGFRFSKLFDRAREFG--VTNGYTFVLHDYNNNLVTLSFTFTP 126 Query: 137 EFLMLANEVIIEAHGACYQVITDFLELF------------KKRSSAARNLTERETSCLQL 184 E A E I+ G ++ E + + RS A TERE L Sbjct: 127 ECRAEATETFIKNKGEISLLLASVHETYLTLTSLSEKNASRSRSENASRFTERENEILYW 186 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T E A LG+ TV ++ + KL N AI + I Sbjct: 187 ASVGKTYPETAMILGIKTCTVKFHMSNIVKKLGVANARHAIRLGMELQLI 236 >gi|328957201|ref|YP_004374587.1| two-component response regulator [YvqE] responding to cell wall stress [Carnobacterium sp. 17-4] gi|328673525|gb|AEB29571.1| two-component response regulator [YvqE] responding to cell wall stress [Carnobacterium sp. 17-4] Length = 210 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERE 178 L + Y++ TS +AN + G +V +E K+ +LT RE Sbjct: 94 LEAGASSYILKTSTASTIANAIRSTYKGETILEPEVTGKMMERLTKKHVHQLHEDLTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G +++EIA+ L +++ TV ++ + KL+ +R QA A + I Sbjct: 154 QEILMLIAQGNSNQEIADALFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHHLI 209 >gi|298247701|ref|ZP_06971506.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550360|gb|EFH84226.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 231 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------- 173 L GY++ + L + + A G +++ L ++ A Sbjct: 101 LRSGACGYLLKDTNRETLFHAIQAAARGEMLLQPEMLARVFALTSSQAKDAAPSFGNVEG 160 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE LQ G S+EIA +LG+S+ TV ++L S KL +R A+A AI Sbjct: 161 MELTEREREILQGVARGERSKEIAVRLGISIRTVGSHLASIYTKLGVDSRASAVALAIER 220 Query: 232 GYI 234 G + Sbjct: 221 GLL 223 >gi|296271341|ref|YP_003653973.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296094128|gb|ADG90080.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 228 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN-LT 175 L +GYV+ + L G A +I D+L ++ + LT Sbjct: 108 LKAGASGYVLKSVADRDLLEACRAAMRGEPFLYPGAVTALIRDYLARARRGERVPDSVLT 167 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++L +GY+S+EIAE L +SV TV+ + + KL +R++ AIR G + Sbjct: 168 PREEEIVKLIAEGYSSKEIAETLQISVKTVDRHRANVLAKLGMRDRLELTRYAIRAGLV 226 >gi|78049642|ref|YP_365817.1| LuxR family two-component response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78038072|emb|CAJ25817.1| two-component system response regulator, LuxR family [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 205 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 55/111 (49%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + + G +VI L L A L+ERE + L+ Sbjct: 99 LDAGVAGYLLKDAPAEQLVDALRQVHRGG--RVIDPQLAL--DAWVEADPLSERERTVLR 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG+G ++ EIA++L LS TV YL KL NRI+A A + G++ Sbjct: 155 LAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 205 >gi|315634983|ref|ZP_07890264.1| nitrate/nitrite response regulator protein NarL [Aggregatibacter segnis ATCC 33393] gi|315476245|gb|EFU66996.1| nitrate/nitrite response regulator protein NarL [Aggregatibacter segnis ATCC 33393] Length = 209 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L +++ A G I + L + S +LT+RE L Sbjct: 98 DAGADGYLLKDTEPDTLLSQLKRIAQGEVILSDSIKNLLLERQSSQSPIDSLTDREIDVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +L G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 158 RLVATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|163854702|ref|YP_001629000.1| LuxR family transcriptional regulator [Bordetella petrii DSM 12804] gi|163258430|emb|CAP40729.1| transcriptional regulator, LuxR-family [Bordetella petrii] Length = 71 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 38/65 (58%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A+ L+ RE CL + G TS EIA LG+S TVN ++G+A KL NR A+A A+ Sbjct: 2 PAKPLSNREHECLHWSAMGKTSWEIAVILGVSERTVNFHIGNACSKLGVYNRRAAVAIAL 61 Query: 230 RFGYI 234 G + Sbjct: 62 SQGLL 66 >gi|325271203|ref|ZP_08137751.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324103661|gb|EGC00960.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 235 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 62/188 (32%), Gaps = 17/188 (9%) Query: 59 LDSGDIPNILIETY--GDDFLFHF-----NSGLLPIIWQSIQEETVIESSGQLSVRLEGG 111 + P+ I Y D + + LP++W + + + Sbjct: 53 YLYSNYPDEWISRYQRDDFYKQDCAAHLSHQSTLPVLWT----DELYHEAPHFR-EAACQ 107 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--- 168 G + H + + + E G+ + + + Sbjct: 108 HGLRHGWTQSLHDLQHNESQISVARPAGSIDINELYEKAGSVQWLCHTLHAVLGEHHLNA 167 Query: 169 --SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 ++ RE L+ + G T+ ++A L LS TVN ++ S K +A N+ AIA Sbjct: 168 LCPPQPKMSARELEVLKWSAAGKTAADVACILSLSQSTVNFHIRSVITKTNAANKAGAIA 227 Query: 227 KAIRFGYI 234 A G+I Sbjct: 228 IAALRGWI 235 >gi|299137698|ref|ZP_07030879.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298600339|gb|EFI56496.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 207 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 2/108 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY+ + L N + Y L ++ + A LT RE L Sbjct: 99 GAMGYLTKDASGEELINAIQTVDRDLRYLPRLALDRLAER--TPAVELTPREREVLICIT 156 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIAE+L ++ TV ++ S K+ A +R QA A++ G + Sbjct: 157 QGRSNREIAEQLHIAEKTVRIHVSSVLDKMGARDRTQATIYALQRGLV 204 >gi|291442824|ref|ZP_06582214.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291345771|gb|EFE72675.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 223 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSAARN--L 174 L +G+++ +E L V G ++I +F K+ ++AA L Sbjct: 98 LRNGASGFLVKDTEPEELLRAVRAVVGGDALLSPGVTRRLIAEFAARSKEPTAAASLALL 157 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE + L G G ++EEIA +L +S T ++ VKL A +R Q + A G + Sbjct: 158 TEREREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 217 >gi|289704669|ref|ZP_06501097.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289558623|gb|EFD51886.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 209 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 48/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + +A+ V A G L + S + L+ERE L+L Sbjct: 100 AGAAGYLLKDAPSEEIASAVRQAAAGRKALAPQVAATLMGRMSGGSEVLSEREIELLELI 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++ A++L +S TV +L KL NR +A+ +A R I Sbjct: 160 ARGATNKMAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 208 >gi|259419174|ref|ZP_05743091.1| transcriptional regulator AhyR/asaR family [Silicibacter sp. TrichCH4B] gi|259345396|gb|EEW57250.1| transcriptional regulator AhyR/asaR family [Silicibacter sp. TrichCH4B] Length = 229 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 64/167 (38%), Gaps = 10/167 (5%) Query: 74 DDFLFHFNSGLLPIIWQSIQE--ETVIESSGQLSVRL-EGGLLPFA---GIAFPVRLGFH 127 D L P +W E + E GQ VR LL + G+ P+ L Sbjct: 66 DPVQRRAAKILNPFVWSYHAEECSVIREDLGQGDVREVRERLLDWTLGRGMTVPLHLP-- 123 Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGD 187 G+ ++ + + Q + + A LT RE CL Sbjct: 124 GRGFATLSA--FVEGRADMDMLARFALQAFELQDRISVELRQARGPLTLREAECLSHTAA 181 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++++IA +L S V +L +A KL A NR A+A A R G+I Sbjct: 182 GLSAKQIAHELNRSESMVVKHLQAAASKLGARNRSHAVAIATRQGWI 228 >gi|291299577|ref|YP_003510855.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568797|gb|ADD41762.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 212 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G+++ LA + +G Q + D + LT+RE L Sbjct: 105 LDAGASGFLVKDGPVDGLARAIRSVVNG---QTVIDPDLAAGAIRAGESPLTDREREVLA 161 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG + +IA++L LS TV YL SA K NRI+A+ KA G++ Sbjct: 162 AAEDGARATDIAKRLHLSDSTVRNYLSSAISKTGTRNRIEAVKKARELGWL 212 >gi|42782344|ref|NP_979591.1| response regulator receiver domain-containing protein [Bacillus cereus ATCC 10987] gi|42738269|gb|AAS42199.1| Response regulator receiver domain protein [Bacillus cereus ATCC 10987] Length = 592 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETSQSKATAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 532 TAREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|289705344|ref|ZP_06501740.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557859|gb|EFD51154.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 230 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 17/126 (13%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK----------KRS 168 +G+++ + L + G +++T + ++ Sbjct: 103 AGASGFLLKDAPPEELLAAIRTVHRGDAVIAPSTTRRLLTHMAPRLRSDQVRSAECEEQQ 162 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A +LT RE L L G + EIA +L LS TV ++G KL A +R+QA+ A Sbjct: 163 AAVASLTPREREVLVLMAQGAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAVLIA 222 Query: 229 IRFGYI 234 R G + Sbjct: 223 HRAGLV 228 >gi|229012429|ref|ZP_04169604.1| Two-component protein Kinase [Bacillus mycoides DSM 2048] gi|228748788|gb|EEL98638.1| Two-component protein Kinase [Bacillus mycoides DSM 2048] Length = 592 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHRGGTLIDQGMSHKIFEKFDEQIETPQSKATAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y SA KL N+ +A+ KA+ G I Sbjct: 532 TTREIEILQLVAKGLRYTTIASRLYLSSGTVRNYASSAYTKLGVRNKEEAVQKALEIGVI 591 >gi|5051409|emb|CAB44989.1| NarL protein [Pseudomonas stutzeri] Length = 218 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAAR--NLT 175 L +GY++ + L ++ I A G QV+ + + + K S + +LT Sbjct: 99 LRNGADGYLLKDMDAEQLIEQIRIAATGRMALSPELTQVLAEAIRVRPKPSGQVQFSHLT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +RE L+L G +++ IA KLG++ TV ++ + KL +R++A Sbjct: 159 KREKEVLRLIAKGQSNKMIARKLGITEGTVKVHVKNLLHKLGLRSRVEAAVW 210 >gi|302557180|ref|ZP_07309522.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302474798|gb|EFL37891.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 382 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 52/124 (41%), Gaps = 14/124 (11%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKR-------SSAA 171 +G+++ L + V + A G +++ D + ++R Sbjct: 255 AGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPAVTRRLVADIVRRRRERAAADTATPQRL 314 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G ++ EIA L +S HTV ++ + KL +R+QA+ A Sbjct: 315 DTLTAREVETLRLLARGLSNAEIATTLFVSEHTVKTHVSNVLGKLALRDRVQAVICAYET 374 Query: 232 GYIC 235 G I Sbjct: 375 GLIV 378 >gi|297563175|ref|YP_003682149.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847623|gb|ADH69643.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 225 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAAR----- 172 L +G+V+ + + L + A G Y + + D L+ R S A Sbjct: 102 LSGGASGFVLKSGDPRQLVEGLRAVAEGGAYLSPEVARRVIDELDASGGRLSRASAARER 161 Query: 173 --NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L L G G +++EIA +L ++ TV ++GS +LD NR+QA A Sbjct: 162 VGRLTERERGVLALVGQGCSNDEIARRLAIAPGTVKVHVGSILTRLDVRNRVQAAVVAYE 221 Query: 231 FGYI 234 G + Sbjct: 222 AGLV 225 >gi|256380225|ref|YP_003103885.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924528|gb|ACU40039.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 215 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKR---SSAARN 173 L +G+++ + L + V + A G ++I DF+ R A Sbjct: 92 LRAGASGFLLKHAPARELLDAVRVVARGDALLAPSITKRLIEDFVRARPARAVRPPALTA 151 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L + G ++ E+A L ++ TV ++ KL +R QA+ A G Sbjct: 152 LTGRETEVLLMVARGLSNAEVARGLNVAEQTVKTHVSRVLTKLGLRDRAQAVIAAYESGL 211 Query: 234 IC 235 + Sbjct: 212 VV 213 >gi|21222053|ref|NP_627832.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|256786858|ref|ZP_05525289.1| two-component system regulator [Streptomyces lividans TK24] gi|289770753|ref|ZP_06530131.1| two-component system regulator [Streptomyces lividans TK24] gi|4753862|emb|CAB42025.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] gi|289700952|gb|EFD68381.1| two-component system regulator [Streptomyces lividans TK24] Length = 221 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFL------ELFKKRSSA 170 L +G+++ + LA+ V + A G ++IT+F L +A Sbjct: 95 LRAGASGFLLKDASARQLADGVRVVAAGEALLAPSITKRLITEFSKLSETPRLMPSAQAA 154 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT+RET L L G ++ EIAE+L ++ T+ ++ VKL +R QA A Sbjct: 155 YGDLTDRETEVLVLIAQGLSNGEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYE 214 Query: 231 FGYIC 235 + Sbjct: 215 ARLVT 219 >gi|295839399|ref|ZP_06826332.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|295827445|gb|EDY46841.2| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 226 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 14/121 (11%) Query: 127 HKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSAA-------R 172 GY++ ++ L + V A G V+ ++ L + + A Sbjct: 102 GATGYLLKSASTEELIDAVRRTALGEAVFTPGLAGLVLGEYRRLAAESAPKAAGARPGTP 161 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 162 RLTDRETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEQG 221 Query: 233 Y 233 Sbjct: 222 L 222 >gi|120406465|ref|YP_956294.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959283|gb|ABM16288.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 219 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKR-----SSAARNLT 175 L +G+V+ S L V A G + V L+ ++ A +LT Sbjct: 97 LRAGASGFVLKDSPAEELIRAVRAVARGDGFLDPSVTARVLDTYRTAAEEPVPEAVDDLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L G ++ EIA++L +S TV +++G +KL +R AI A + G + Sbjct: 157 PRELDVLRLMAKGRSNSEIADELVISGVTVKSHIGRIFLKLRLRDRAAAIVYAYQKGIVA 216 >gi|325282407|ref|YP_004254948.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] gi|324314216|gb|ADY25331.1| two component transcriptional regulator, LuxR family [Deinococcus proteolyticus MRP] Length = 222 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN-LTER 177 GYV+ ++ L + + A G V+ DF + ++ N L ER Sbjct: 103 AGARGYVLKDADSSALLDAIRRVAAGEALLNPDMAQNVLDDFRDKREELPQEKHNDLNER 162 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ET L+L G+++++IA +L +S TV L KL NR QA AIR G Sbjct: 163 ETMILKLLAQGFSNQDIALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 218 >gi|296130230|ref|YP_003637480.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022045|gb|ADG75281.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 239 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 16/125 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----------------KRSS 169 +G+++ + + + G + L + Sbjct: 111 AGASGFLLKDAPPEEMLAAIRTVHRGDAVIAPSSTRRLLEHLVTALPGDAPAATADPAHQ 170 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LTERE L L G ++ EI + L ++ TV ++G KL A +R+QA+ A Sbjct: 171 AVAQLTEREREVLVLMARGRSNTEIGQDLFVAEATVKTHVGRILAKLGARDRVQAVVVAY 230 Query: 230 RFGYI 234 G + Sbjct: 231 EAGLV 235 >gi|311279135|ref|YP_003941366.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] gi|308748330|gb|ADO48082.1| transcriptional regulator, LuxR family [Enterobacter cloacae SCF1] Length = 240 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 41/187 (21%), Positives = 66/187 (35%), Gaps = 23/187 (12%) Query: 63 DIPNILIETYG-------DDFLFH--FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 P I Y D L + G LP W + ++ + GL Sbjct: 62 TYPRAWIAQYQAENYFTIDPVLKPENYRHGYLP--WT---DRLFQDAQEFWDAARDHGL- 115 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 G+ + L G++ + E + E Q++ +F R + Sbjct: 116 -RKGVTQCLILPNRALGFLSVSREGIQKDPLAEDETQMR-LQMLAEFSTTALLRLDDSAI 173 Query: 174 LTE------RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L+ +G TS EI+ L +S +TVN + + K +A N+ Q Sbjct: 174 LTPEMKFSKRELEILKWTAEGKTSAEISIILSISENTVNFHQKNMQKKFNAPNKTQIACY 233 Query: 228 AIRFGYI 234 A+ G I Sbjct: 234 AVATGLI 240 >gi|313837284|gb|EFS74998.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928042|gb|EFS91873.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314972055|gb|EFT16153.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328907167|gb|EGG26933.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 217 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L +G+++ +E +L + A G +VI K NLT Sbjct: 92 LDAGASGFMLKNAEADLLVTGLRQVAEGHALLAPEVTRRVIARSASRLAKLDRRVENLTS 151 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIA +L +S TV ++ S K D +R+Q + A G I Sbjct: 152 REIEVTRLVARGLSNAEIAAELTVSEATVKTHVSSCLTKCDLRDRVQLVVLAYESGLI 209 >gi|300784317|ref|YP_003764608.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299793831|gb|ADJ44206.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 213 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 45/117 (38%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L G++ ++ +A + A G +++ R LT Sbjct: 95 LRAGARGFLTKDADAESIARALRSAAAGQSTVDGELQRRLVEAAARSAPPRVKEVEGLTA 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+L G ++ EIA L +S TV ++ K +R QA+A A R G Sbjct: 155 RELEVLRLIAAGLSNTEIARTLVVSEATVKTHVNHLFAKAGLRDRAQAVAFAYRAGI 211 >gi|297193099|ref|ZP_06910497.1| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151643|gb|EFH31285.1| two-component system regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 56/123 (45%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA----R 172 L +G+++ + LA+ V + A G ++IT+F +L + AA Sbjct: 95 LRAGASGFLLKDASARQLADGVRVVAAGEALLAPTVTRRLITEFSKLSETPRPAAMTQVA 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERET L L G ++ EIA L ++ T+ ++ VKL +R QA A Sbjct: 155 DLTERETEVLVLIAQGLSNAEIASHLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEAR 214 Query: 233 YIC 235 + Sbjct: 215 LVT 217 >gi|85860164|ref|YP_462366.1| two-component response regulator [Syntrophus aciditrophicus SB] gi|85723255|gb|ABC78198.1| two-component response regulator [Syntrophus aciditrophicus SB] Length = 215 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSA------ARNLT 175 L +GY++ F LA + H +I+D + S A +LT Sbjct: 95 LSAGASGYLLKDCAFEELAKAIRTVVTNHTYLSPMISDIVVKSYINKSPETTTENAPSLT 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE LQL +G T++EIA L +SV TV + + KL+ + I AIR G + Sbjct: 155 AREREMLQLMAEGMTAKEIAAHLFVSVKTVETHRRNIAQKLNINRAAELIKYAIREGLVT 214 >gi|170781371|ref|YP_001709703.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155939|emb|CAQ01071.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 249 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 22/134 (16%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-------- 172 L +G+V+ ++ L V + + G V ++ F + S A+ Sbjct: 112 LDAGASGFVLKSASPESLVEAVHVISRGDALLSPDVTRRVIDRFGRGSGASDDDEATPTP 171 Query: 173 -----------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 LT+RE L+L +G + EIAE+L L TV ++ +KL +R Sbjct: 172 APTIPTDPRVATLTDRELEVLRLLAEGLANAEIAERLYLGEATVKTHVSRLLLKLGVRDR 231 Query: 222 IQAIAKAIRFGYIC 235 +QA+ A G + Sbjct: 232 VQAVVFAYERGIVV 245 >gi|302547311|ref|ZP_07299653.1| response regulator, two-component system [Streptomyces hygroscopicus ATCC 53653] gi|302464929|gb|EFL28022.1| response regulator, two-component system [Streptomyces himastatinicus ATCC 53653] Length = 220 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE----LFKKRSSAAR 172 L +G+++ + + + V + A G A Q+ + E + + Sbjct: 95 LRAGADGFLLKRARPAEIVHAVRLVAEGDSLLFPAAVRQLAASYGENDGSAEGRAALERA 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L + TV +++ S KL A +R QA+ A G Sbjct: 155 ALTEREGDVLRLVARGLSNAEIAARLVVGTETVKSHVSSVLAKLGARDRTQAVIAAYESG 214 Query: 233 YIC 235 ++ Sbjct: 215 FVS 217 >gi|229819214|ref|YP_002880740.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565127|gb|ACQ78978.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 209 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD----FLELFKKRSSAARNLTERET 179 L GYV+ + L V A G + + + ++ A L+ RE Sbjct: 94 LDAGARGYVLKDAPREELFRAVRAVADGETFLAPSVAGLLVSRVRARQQPAPAALSGREV 153 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L DG T+ + A+ LG++ TV +L KL +R A+A R G + Sbjct: 154 DVLRLVADGRTNRQAAQLLGVTEATVKTHLLHVYAKLGVPDRAAAVAAGYRSGLL 208 >gi|77463659|ref|YP_353163.1| two component transcriptional regulator, LuxR [Rhodobacter sphaeroides 2.4.1] gi|221639502|ref|YP_002525764.1| LuxR family two component transcriptional regulator [Rhodobacter sphaeroides KD131] gi|332558515|ref|ZP_08412837.1| Two component transcriptional regulator, LuxR family protein [Rhodobacter sphaeroides WS8N] gi|77388077|gb|ABA79262.1| two component transcriptional regulator, LuxR [Rhodobacter sphaeroides 2.4.1] gi|221160283|gb|ACM01263.1| Two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides KD131] gi|332276227|gb|EGJ21542.1| Two component transcriptional regulator, LuxR family protein [Rhodobacter sphaeroides WS8N] Length = 210 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 49/111 (44%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G V+ T+ L N + G Y + + + S+ LTE+E + Sbjct: 100 LATGASGIVLKTTPVRSLGNAIRFMHAGEHYLPLELARDRRQAPDSSGGRLTEKEMLVMS 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++EIA L L+ T+ ++ S KL A NR QA+ A G I Sbjct: 160 YLAEGRQNKEIAHGLNLAEPTIKMHVKSICKKLGATNRTQAVVTARNLGII 210 >gi|332072188|gb|EGI82674.1| response regulator [Streptococcus pneumoniae GA41301] Length = 199 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E S L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEVVMTHPNPLTEQEISVLKGV 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA+KL LS TV Y+ + KLDA NR +A A G++ Sbjct: 151 AQGLSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|331698378|ref|YP_004334617.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953067|gb|AEA26764.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 212 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 1/111 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L V G L + R+ L+ RE LQL Sbjct: 101 AGATGYLLKDTPRDELLRAVRAAYRGEAVLSPAVAGRLMGQVRTPTEEALSSRELEVLQL 160 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G T+ E A +L +S T+ +L KL+ +R A++ A R G + Sbjct: 161 VAAGATNREAARRLFISEATIKTHLLHIYAKLEVRDRASAVSAAYRRGLLT 211 >gi|325000860|ref|ZP_08121972.1| LuxR family transcriptional regulator [Pseudonocardia sp. P1] Length = 222 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRS---SAARNLTERETS 180 Y++ ++ ++ + V G Y + L + + R L+ RE Sbjct: 108 AGAQAYLLKSASPSVVTDGVKRVLDGGVYADPTVAPLLATGSRVPGTDNTPRELSAREVE 167 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQL DG +++EI E L LS TV ++L KL +R Q +A A+R G I Sbjct: 168 VLQLVADGQSNKEIGEALNLSALTVKSHLSRIGRKLGTGDRAQMVALAMRAGVI 221 >gi|239927379|ref|ZP_04684332.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291435723|ref|ZP_06575113.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291338618|gb|EFE65574.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 222 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARNL-T 175 L +GYV+ + L GA +I ++L+ + A L T Sbjct: 102 LKAGASGYVLKSVADRDLVAACRAAMRDEPFLYPGAVTALIRNYLDRVRDGEEAPEQLLT 161 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G++S+EIAE L +SV TV + + KL +R+ AIR G + Sbjct: 162 PREEEVLKLVAEGHSSKEIAELLFISVKTVQRHRENLLHKLGLRDRLDLTRYAIRAGLV 220 >gi|288572830|ref|ZP_06391187.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568571|gb|EFC90128.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 215 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKR-SSAARNLT 175 L +GY + L + I + G Y +I D+L+L S A L+ Sbjct: 94 LKAGASGYALKEGSSEELIRAIHIVSSGETYLSPKIASILIKDYLKLLDTAVPSRASLLS 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L L G +++E+A L +S +TV+ + KLD N + I AIR G I Sbjct: 154 DREREVLALLAKGSSTKEVASSLHISKNTVDTHRRRIMEKLDCGNIAELIRFAIREGLI 212 >gi|182434678|ref|YP_001822397.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463194|dbj|BAG17714.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 232 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSS-AARNLT 175 L GYV+ + L GA +I +FL+ K AR +T Sbjct: 112 LKAGAAGYVLKSVADRDLVEACRAAMRDEPFLYPGAVTALIRNFLDRAKDGEDLPARAIT 171 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L +G++S+EIAE L +SV TV + + KL +R++ AIR G I Sbjct: 172 EREEEILKLVAEGHSSKEIAEMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 230 >gi|29828980|ref|NP_823614.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29606085|dbj|BAC70149.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 227 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 11/125 (8%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKR-------SS 169 FP L GY+ + + V G + LE + S Sbjct: 99 FPA-LRAGARGYLTKDAGGDEIVRAVESVLSGDAGLSPSIQRRLLERLSEPERGQAASSE 157 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L L +G ++ EIA +L +S TV ++ + K +R QA+ A Sbjct: 158 VPDGLTAREAEVLVLIAEGLSNHEIARRLHVSTATVKTHINNLFAKTGLKDRAQAVRYAY 217 Query: 230 RFGYI 234 G + Sbjct: 218 GKGLV 222 >gi|126348513|emb|CAJ90237.1| putative two-component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 220 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----------RSSAAR 172 L +G+++ + + + V + A G L + S Sbjct: 96 LRAGADGFLLKRARPAEIVHAVRLIAEGESLLFPASVRRLAARYGDGGGDRAARAESTRA 155 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L + TV +++ + KL A +R QA+ A G Sbjct: 156 RLTEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESG 215 Query: 233 YIC 235 ++ Sbjct: 216 FVA 218 >gi|10957401|ref|NP_051615.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6460830|gb|AAF12534.1|AE001826_3 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 209 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 2/113 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTERETSC 181 L + Y + ++ +L + A G+ Y + + + A LT RE Sbjct: 97 LASGADAYCLKSASPDLLLLAIRAAAAGSAYLDPQVAHHVLGGVRMPEAHSPLTPRELDI 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L DG +++IAE LG+SV TV ++ +L A +R QA KA+R G + Sbjct: 157 LRLIADGLPNKDIAEALGVSVSTVKLHIQDILHRLQAADRTQAAVKALRAGLL 209 >gi|145224163|ref|YP_001134841.1| two component LuxR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315444498|ref|YP_004077377.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] gi|145216649|gb|ABP46053.1| two component transcriptional regulator, LuxR family [Mycobacterium gilvum PYR-GCK] gi|315262801|gb|ADT99542.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Mycobacterium sp. Spyr1] Length = 217 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA--RNLTE 176 GY++ ++ L + V A G V+ +F + + + A LTE Sbjct: 99 AGATGYLVKSASKQELGDAVRATAQGRAVFTPGLAGLVLGEFRRIEQSSPAGADGPTLTE 158 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+ G T+++IA +L LS TV ++ + KL NR++ AI G Sbjct: 159 RETEILRYVAKGLTAKQIASRLSLSHRTVENHVQATFRKLQVGNRVELARYAIEHGL 215 >gi|297560931|ref|YP_003679905.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296845379|gb|ADH67399.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 217 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL--ELFKKRSSAARNL 174 L +G++I S+ + V A G +V+ F+ E R L Sbjct: 97 LRAGASGFLIKDSDPQEMLAAVRAAARGEALLSPSVTRRVVAAFVSREPGGGRVPRLEVL 156 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE + L G+G ++EEIA +L +S T ++ A VKL A +R Q + A R G + Sbjct: 157 TEREREVVGLVGEGLSNEEIAARLVVSPATARTHVSRAMVKLGARDRAQLVVFAFRAGLV 216 >gi|256376857|ref|YP_003100517.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921160|gb|ACU36671.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 227 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 46/124 (37%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA---------A 171 L +G+++ + L + + A G +V L F + Sbjct: 100 LRAGASGFLLKNASPEDLVEAIRVVARGDALLSPEVTRRVLARFAGPAPRAAPATAPNRP 159 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT+RE L G ++ EIA +L L TV ++ KL +R A+ A Sbjct: 160 ADLTDREYEVLVHLARGSSNAEIAARLHLGETTVKTHVSRVLAKLGLRDRTHAVVYAYEH 219 Query: 232 GYIC 235 G + Sbjct: 220 GVVA 223 >gi|217976880|ref|YP_002361027.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217502256|gb|ACK49665.1| transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 242 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 44/169 (26%), Positives = 67/169 (39%), Gaps = 9/169 (5%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D +LP+ W ++ + + G G+ PVR ++ Sbjct: 73 DSMTSAIARAVLPMDWAQLRRRSAQKRGIHFLPNSLG--NNRQGVTIPVRGPSGGYWALL 130 Query: 134 FTSE------FLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAG 186 + + +E+ + Y V +L SA A ++T RE LQ Sbjct: 131 IATSNETHLQWTARRHELTKDLVQIAYYVHARACDLHGVSYSADAADVTSREIEALQFMA 190 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G EIA ++ +S TV A L SA VKL A+NR A AKA+ G I Sbjct: 191 EGKMIVEIATRMRVSQSTVLALLESARVKLHALNRAHAAAKALGVGLIS 239 >gi|297624009|ref|YP_003705443.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297165189|gb|ADI14900.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 211 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA----ARNLTERET 179 L NGYV ++ L + + + G Y EL + S + LTERE Sbjct: 96 LEAGGNGYVPKSALETQLLDAIRAVSRGEYYAPARLLAELARDLSESGPYRHVRLTERER 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S L G T +EIAE+LG+S TV Y A KL R + + A++ G I Sbjct: 156 SVLARIAQGCTYKEIAEELGISDKTVATYRERAAEKLGLKTRAELVRYALQHGLI 210 >gi|239944642|ref|ZP_04696579.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239991106|ref|ZP_04711770.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291448106|ref|ZP_06587496.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291351053|gb|EFE77957.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 222 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------L 174 L +G+++ + F L + V + A G ++ + F ++ +A L Sbjct: 96 LTAGASGFLLKDATFPELLHAVRVVAGGHALLAPEITGRLIAEFARQRVSAPPKRSIEGL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G ++ +IA++L ++ HTV ++ K+ +R QA+ A G + Sbjct: 156 TAREAEVLVLIARGLSNADIADRLTITDHTVKTHINRLFAKMGLRDRAQAVILAYELGLV 215 Query: 235 C 235 Sbjct: 216 V 216 >gi|86158419|ref|YP_465204.1| two component LuxR family transcriptional regulator [Anaeromyxobacter dehalogenans 2CP-C] gi|85774930|gb|ABC81767.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-C] Length = 218 Score = 99.7 bits (247), Expect = 3e-19, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTE 176 L +GYV+ S LAN + G + + + +LT+ Sbjct: 97 LKAGVSGYVLKKSAGAELANAIRAVHRGGLVLDPEVARTAMEEAGPAAPGEADPYESLTD 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G +++E+A+ LG+SV T ++ KL NR + + AIR G I Sbjct: 157 REKQVLKLVAEGRSNKEVADVLGISVKTAMSHREHVMEKLGVHNRTELVRFAIRKGVI 214 >gi|290963132|ref|YP_003494314.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260652658|emb|CBG75791.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 228 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKK----RSSAAR 172 L +G++ E L + V + A G +I L Sbjct: 97 LRAGASGFLGKGVEPAHLLDAVRLVAAGEALLSPAATKGLIARVLAAPSPGDLVDPRRLA 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G G +++EIAE+L ++ TV + A KL A +R Q + A G Sbjct: 157 TLTPREREVLTLVGSGLSNDEIAERLFVTPVTVKTHANRAMTKLGARDRAQLVVIAYETG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|218289394|ref|ZP_03493628.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|218240500|gb|EED07681.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] Length = 200 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ + LA + G ++V EL L+ RE L+ Sbjct: 94 LQVGVHGYLLKDGKVEQLAAHLRSIMAG--HRVFDP--ELMVAAMETDSPLSAREIDVLR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G T+ ++A++L LS TV YL A KL R +AI KA G++ Sbjct: 150 LAKRGLTTRQMAKELFLSEGTVRNYLSGALAKLGCATRQEAIRKADEMGWL 200 >gi|196231497|ref|ZP_03130355.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196224350|gb|EDY18862.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 216 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK----RSSAARNLTERE 178 GY++ T+ +A + G ++ L++F + R LT RE Sbjct: 101 AGAAGYLLKTAPVEEIARAIRDALAGGAPMNGRIARRVLDMFARFAPTRGDGDYGLTTRE 160 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T L+ G T +EIA +L LS HTV+ +L + KL+ R A+AKA++ + Sbjct: 161 TQILEAMVKGRTKKEIAAQLDLSFHTVDTHLRNIYQKLEVNTRTGAVAKALKEKLV 216 >gi|327443251|gb|EGE89905.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] Length = 218 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARNLT 175 L +G+++ ++ L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|282801728|gb|ADB02831.1| AzicR2 [Kibdelosporangium sp. MJ126-NF4] Length = 214 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 1/111 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L V A G + L + R+SAA L++RE L L Sbjct: 97 AGATGYLLKDAPRDELLRAVRATARGEAVLAPSAAALLMSRVRASAAGPLSQRELEVLHL 156 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G T+ E A +L L+ T+ ++L + KL +R A+ G + Sbjct: 157 VAEGATNREAAARLFLTEATIKSHLLNIYGKLGVSDRAAAVTAGFNRGLLV 207 >gi|302551299|ref|ZP_07303641.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468917|gb|EFL32010.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN-LT 175 L +G+++ + L + + A G ++I FL + L+ Sbjct: 97 LRAGASGFLVKDTRPAELLDAIRTVAAGDSLLSPGPTARLIQRFLRSPSAPETGGPECLS 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +RE L L G G + EIAE LGLS T ++ KL A +R Q + A G + Sbjct: 157 DREREVLTLVGRGLNNTEIAESLGLSPLTAKTHVSRIMGKLAARDRAQLVIVAYESGLVT 216 >gi|256790030|ref|ZP_05528461.1| two-component response regulator [Streptomyces lividans TK24] gi|289773911|ref|ZP_06533289.1| two-component system response regulator [Streptomyces lividans TK24] gi|289704110|gb|EFD71539.1| two-component system response regulator [Streptomyces lividans TK24] Length = 223 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ L + + A G A +IT FL+ R+S Sbjct: 97 LRIGASGFLGKDVTAEELLDGIRTVAAGDALLSAAATRSLITRFLDSPDPRASPVPPEDL 156 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L DG + +EIA +L LS TV ++ A KL A +R Q +A A R Sbjct: 157 AALTAREREVTALVADGKSDKEIAAELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRS 216 Query: 232 GY 233 G Sbjct: 217 GL 218 >gi|282865409|ref|ZP_06274461.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282559882|gb|EFB65432.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 203 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + +++ + LA+ V G + + D + A LT+RE L+ A Sbjct: 99 GADAFLVKDAPSAQLADAVRRVLGG---ERVIDPALAAAALAEGANPLTDREREVLRAAA 155 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EIA + LS TV YL +A K A NR +A+ A G++ Sbjct: 156 DGATNVEIAGAMHLSPGTVRNYLSTAIQKTAARNRTEAVRVAGEKGWL 203 >gi|253575444|ref|ZP_04852781.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845091|gb|EES73102.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 201 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 3/106 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 GY++ L + + G + D E+ + LTERET L+L+ G Sbjct: 99 EGYLLKDEPIEFLIDAIRRVMAGE-RVISKDLAEVLFLKED--NPLTERETEVLRLSHAG 155 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EIAE L L+ TV YL A KL R QA +A G+I Sbjct: 156 RSTREIAETLFLTEGTVRNYLSLAIQKLGVETRQQATERAKERGWI 201 >gi|30575828|gb|AAP32919.1| CviR [Chromobacterium violaceum] Length = 233 Score = 99.3 bits (246), Expect = 3e-19, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 38/178 (21%) Query: 61 SGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + P+ ++ Y D L + G P++W+ + + Sbjct: 77 NVSYPSDWLDQYMKENYAQHDPILR-IHLGQGPVMWEERFNRAKGAEEKRF-IAEATQNG 134 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 +GI F + G ++ + R Sbjct: 135 MGSGITFSAASERNNIGSILSIAG-----------------------------REPGNMP 165 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE G T+ EIA L +S TV ++ + KL+A NR AI + Sbjct: 166 LSQREYDIFHWMSRGKTNWEIATILDISERTVKFHVANVIRKLNANNRTHAIVLGMHL 223 >gi|322388622|ref|ZP_08062222.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] gi|321140542|gb|EFX36047.1| DNA-binding response regulator [Streptococcus infantis ATCC 700779] Length = 199 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L Sbjct: 95 AGVDAYVLKERSIAELMQTLHTVLEGRKEY----SPELMEVMMTHPNPLTEQEVAVLHGV 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA+KL LS TV Y+ + KL A NR +A A G++ Sbjct: 151 AQGLSNQEIADKLYLSNGTVRNYMTNILSKLGASNRTEAAKTAEEEGWL 199 >gi|326775192|ref|ZP_08234457.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326655525|gb|EGE40371.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 230 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSS-AARNLT 175 L GYV+ + L GA +I +FL+ K AR +T Sbjct: 110 LKAGAAGYVLKSVADRDLVEACRAAMRDEPFLYPGAVTALIRNFLDRAKDGEDLPARAIT 169 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L +G++S+EIAE L +SV TV + + KL +R++ AIR G I Sbjct: 170 EREEEILKLVAEGHSSKEIAEMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 228 >gi|229542987|ref|ZP_04432047.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] gi|229327407|gb|EEN93082.1| transcriptional regulator, LuxR family [Bacillus coagulans 36D1] Length = 511 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%) Query: 153 CYQVITDFLEL--FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 +++ FL+ + ++ L+ RE LQL DG ++ E AE L LS +TV Y+ Sbjct: 427 AGELLAKFLKANQWDEKQPELVQLSAREIHILQLLADGASTTEAAEMLHLSEYTVRDYVS 486 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 S +L A NR +A KA+R G I Sbjct: 487 SLMKRLHARNRTEAAVKAMRLGLI 510 >gi|157693715|ref|YP_001488177.1| response regulator [Bacillus pumilus SAFR-032] gi|194015458|ref|ZP_03054074.1| response regulator [Bacillus pumilus ATCC 7061] gi|157682473|gb|ABV63617.1| response regulator [Bacillus pumilus SAFR-032] gi|194012862|gb|EDW22428.1| response regulator [Bacillus pumilus ATCC 7061] Length = 211 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 Y++ TS+ +A+ + + G +V+ S LT RE Sbjct: 96 AGALSYLLKTSKAGEIADAIRSASIGEPRLESKVAGKVMNKLRH-SSNGSILHDALTARE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L DG +++ IAE+L +++ TV ++ + KLD +R QA A R I Sbjct: 155 MEILKLIADGKSNKVIAEELFITIKTVKTHITNILSKLDVEDRTQAAVYAHRHKLI 210 >gi|123441494|ref|YP_001005480.1| nitrate/nitrite response regulator protein NarP [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088455|emb|CAL11247.1| nitrate/nitrite response regulator protein NarP [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 209 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE +L + + + G +T +L ++ + LTERE L Sbjct: 98 DAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQYLSSRDEQVNPFSELTERELDVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 Q G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 158 QEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 199 >gi|148553102|ref|YP_001260684.1| LuxR family transcriptional regulator [Sphingomonas wittichii RW1] gi|148498292|gb|ABQ66546.1| transcriptional regulator, LuxR family [Sphingomonas wittichii RW1] Length = 254 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 47/232 (20%), Positives = 77/232 (33%), Gaps = 10/232 (4%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICE-LHNYDLDSGDIPNI 67 + + S +LS + + R FAL + + C L NY D Sbjct: 23 EAAESSAQLSEVIAGAIQQFGFRWFAL----VDDGDLYKHRSGCMMLTNYPSSWVDEVIS 78 Query: 68 LIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGF 126 D + W I + + + QLSV G G P R+ Sbjct: 79 ARLYRDDPVHAASIRSPTGLCWDRIPD-VIAPTRAQLSVLERGRAHGLTTGYTVPFRIPG 137 Query: 127 HKNGYVIFTSEFL---MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + + + + G L + + LT R+ CL+ Sbjct: 138 ERGAFFSIARPKDRSFTYSEAISAQLLGGIAFEAGRALVKGRAVKAHGAPLTPRQIDCLR 197 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G T E+ + LGLS T++ Y+ +A + R Q + A R GY+ Sbjct: 198 LIAAGKTEWEMGKILGLSPSTIHEYVEAARRRYGVKTRSQLVLAAARDGYVS 249 >gi|33151542|ref|NP_872895.1| nitrate/nitrite response regulator protein [Haemophilus ducreyi 35000HP] gi|33147762|gb|AAP95284.1| nitrate/nitrite response regulator protein [Haemophilus ducreyi 35000HP] Length = 213 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 2/103 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSC 181 + +GY++ S+ L + G + L +R LT+RE Sbjct: 97 MDAGVDGYLLKDSDTSELRENIRKAVLGETVLSDSIRAHLLNRRPENDPLSVLTDRERDV 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LQ G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 157 LQWIATGMSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAA 199 >gi|21218963|ref|NP_624742.1| two-component response regulator [Streptomyces coelicolor A3(2)] gi|6138889|emb|CAB59718.1| putative two-component response regulator [Streptomyces coelicolor A3(2)] Length = 219 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ L + + A G A +IT FL+ R+S Sbjct: 93 LRIGASGFLGKDVTAEELLDGIRTVAAGDALLSAAATRSLITRFLDSPDPRASPVPPEDL 152 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L DG + +EIA +L LS TV ++ A KL A +R Q +A A R Sbjct: 153 AALTAREREVTALVADGKSDKEIAAELFLSPLTVRTHVQRAKTKLGARDRAQLVAHAYRS 212 Query: 232 GY 233 G Sbjct: 213 GL 214 >gi|289425275|ref|ZP_06427052.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289154253|gb|EFD02941.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|313792254|gb|EFS40355.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313838624|gb|EFS76338.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|315078129|gb|EFT50180.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|327453031|gb|EGE99685.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] Length = 218 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARNLT 175 L +G+++ ++ L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGSTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|183601417|ref|ZP_02962787.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|241191083|ref|YP_002968477.1| putative response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196489|ref|YP_002970044.1| putative response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219023|gb|EDT89664.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis HN019] gi|240249475|gb|ACS46415.1| Putative response regulator [Bifidobacterium animalis subsp. lactis Bl-04] gi|240251043|gb|ACS47982.1| Putative response regulator [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295794072|gb|ADG33607.1| Putative response regulator [Bifidobacterium animalis subsp. lactis V9] Length = 226 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 22/131 (16%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARN----- 173 +G+++ +E L N + A A ++I +E + R Sbjct: 96 AGASGFLLKDTEPETLLNSIRTVHQGNAIIAPTATKRLIEKMMETGVTQEGPGRQQSEVA 155 Query: 174 ----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE L G +++EIA+KL +S+ TV ++ K++A +R+Q Sbjct: 156 AEYTDPELATLTEREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILQKINARDRVQ 215 Query: 224 AIAKAIRFGYI 234 A+ A + Sbjct: 216 AVVFAYENHLV 226 >gi|308445190|gb|ADO32764.1| putative two-component response regulator [Streptomyces vietnamensis] Length = 202 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 3/112 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ + LA + A G D A LT+RE L+ Sbjct: 94 LDAKVAGFLPKDASPQDLAEAIRRIAAG---HRAIDLQLALAAWDGAESPLTKRELEVLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G + EIA + LS TV YL S KL+A NR+ A+ A G++ Sbjct: 151 LTAAGDEAPEIAARPHLSTGTVRNYLTSVVTKLNARNRVDAVRIAHESGWLV 202 >gi|238025268|ref|YP_002909500.1| Autoinducer-binding domain-containing protein [Burkholderia glumae BGR1] gi|237879933|gb|ACR32265.1| Autoinducer-binding domain protein [Burkholderia glumae BGR1] Length = 273 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 16/225 (7%) Query: 7 TGKKSSSLQEL-SPRLHLIQNRIKARNFAL--YTINSALDFPRRQQLICELHNYDLDSGD 63 + + L + + FA Y N++L ++L+ + N+ Sbjct: 43 LAAAARERGDTPESLLDAVLPIARRLGFAYLEYFFNTSLPVSAPRKLV--IGNFPPAWSR 100 Query: 64 IPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + + + S ++P+ W E + ++ G+ G + VR Sbjct: 101 REGADEVSEANPIIARCKSSMMPMAW---DEASFASHPDFRAMLARAGIGG--GWSQLVR 155 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG----ACYQVITDFLELFKKRSSAARN--LTER 177 G G + A + +EA + V + ++ + + A LTE Sbjct: 156 DGAGNWGVLTVARTACRYAGAMEVEAEAQLLWLAHIVHSRLCQMLRPPMTGANRVLLTEM 215 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 E + L+ DG TS E+AE L +S TVN ++ + K++ N+ Sbjct: 216 EKTILRWTVDGKTSGELAEILQVSARTVNFHVQNILAKMNTCNKT 260 >gi|118465644|ref|YP_883262.1| response regulator receiver domain-containing protein [Mycobacterium avium 104] gi|118166931|gb|ABK67828.1| response regulator receiver domain [Mycobacterium avium 104] Length = 221 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA--RNLTE 176 GY++ ++ LA V A G V+ ++ + + + LT+ Sbjct: 101 AGAAGYLVKSASKAELAQAVTDTAAGRAVFTPSLAGLVLGEYRRIAQSKDDGPTRPRLTD 160 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+ G ++++IAEKL LS TV ++ + KL NR++ AI G Sbjct: 161 RETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217 >gi|52424333|ref|YP_087470.1| CitB protein [Mannheimia succiniciproducens MBEL55E] gi|52306385|gb|AAU36885.1| CitB protein [Mannheimia succiniciproducens MBEL55E] Length = 226 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L ++ A G I + L LT+RE L Sbjct: 115 DAGADGYLLKDTEPDTLLAQIKQIAQGEIILSDSIKNLLVERHPAHEPIHALTDREMDVL 174 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 QL G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 175 QLIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATV 218 >gi|41409373|ref|NP_962209.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398193|gb|AAS05823.1| NarL_2 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 221 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA--RNLTE 176 GY++ ++ LA V A G V+ ++ + + + LT+ Sbjct: 101 AGAAGYLVKSASKAELAQAVTDTAAGRAVFTPSLAGLVLGEYRRIAQSKDDGPTRPRLTD 160 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+ G ++++IAEKL LS TV ++ + KL NR++ AI G Sbjct: 161 RETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 217 >gi|260655487|ref|ZP_05860975.1| DNA-binding response regulator, LuxR family [Jonquetella anthropi E3_33 E1] gi|260629935|gb|EEX48129.1| DNA-binding response regulator, LuxR family [Jonquetella anthropi E3_33 E1] Length = 212 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V+ T+ L + A G+ + + ++ + + L+ RE L Sbjct: 96 LKAGAKGFVLKTTSAGALMKAIQTVATGSLF-LDSEVASVVGAQEELTEALSPREREVLL 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 A G +S+E+A +L +S TV +L S KL A N+ +A+ A++ G + Sbjct: 155 CAARGLSSKEVAAQLYISERTVQTHLASVYDKLGAHNKTEAMLLALKHGLMT 206 >gi|229083091|ref|ZP_04215495.1| Two-component protein Kinase [Bacillus cereus Rock4-2] gi|228700249|gb|EEL52831.1| Two-component protein Kinase [Bacillus cereus Rock4-2] Length = 592 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S AA L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETPQSKAAAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ A+ G I Sbjct: 532 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQMALEIGII 591 >gi|156743203|ref|YP_001433332.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156234531|gb|ABU59314.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 222 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 5/115 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRS--SAARNLTERETS 180 Y++ ++ L + + G V + F++ S A LTERE Sbjct: 100 AGARAYLLKDADADELIDVIERVHRGEAALDPTVTLRVFDEFRRLSIDQDAEQLTERERD 159 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L +G+ + IA++L LS TV L KL NR QA A++ G I Sbjct: 160 ILTLLAEGHDNRTIAQRLFLSEKTVGNRLSEIFQKLGVSNRTQAALVAVQRGLIA 214 >gi|323139047|ref|ZP_08074106.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] gi|322395707|gb|EFX98249.1| transcriptional regulator, LuxR family [Methylocystis sp. ATCC 49242] Length = 261 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 1/119 (0%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 I FP+ F E L + +++ + S + LT+ Sbjct: 144 RIVFPIVTVADMQCGFAFLGENLSRDETAMEILSFIANYAFARMVKVDRMCKSKPK-LTD 202 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 R++ L+ A G T EIA L +S HTV+ Y+ + L+AVNR AI A+R+G I Sbjct: 203 RQSEVLKWAALGKTDWEIAAILDVSQHTVDKYMRQSKEALNAVNRTAAIVLAMRYGLIS 261 >gi|261407019|ref|YP_003243260.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261283482|gb|ACX65453.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 601 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------------ACYQVITDFLELFKKRSSA 170 + +GY++ + + L LA + G A + + ++S+ Sbjct: 477 MRSGVDGYLLKSMQPLELAETIRTVHRGGTLIDQGMSHKLFAQLEADNSRDDPSSIKASS 536 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LT RE LQ +G + IA KL LS TV Y S +KL NR +A+ KA Sbjct: 537 AYDLTPRELEILQFVSEGLRYKSIASKLYLSDGTVRNYASSVYMKLGVRNREEAVQKARE 596 Query: 231 FGYI 234 G + Sbjct: 597 AGLL 600 >gi|220935339|ref|YP_002514238.1| two component transcriptional regulator, LuxR family [Thioalkalivibrio sp. HL-EbGR7] gi|219996649|gb|ACL73251.1| two component transcriptional regulator, LuxR family [Thioalkalivibrio sp. HL-EbGR7] Length = 227 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 11/120 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK----------RSSAARN 173 L GY++ E L + + G V D +L + S Sbjct: 94 LRNGAQGYLLKEMEPGDLVDALEEILQGKTV-VAPDLAQLLVRVVQGKSSSANEPSPFDE 152 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L +G +++ IA LG+S TV ++ + KL +R++A A++ G Sbjct: 153 LTPREGEILALLAEGQSNKVIARNLGISDGTVKLHVKAILRKLGVHSRVEAAVLAVQQGL 212 >gi|145594340|ref|YP_001158637.1| response regulator receiver [Salinispora tropica CNB-440] gi|145303677|gb|ABP54259.1| response regulator receiver [Salinispora tropica CNB-440] Length = 230 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA---RN 173 L +G+++ L + + A G +VI F + ++ A + Sbjct: 106 LRAGASGFLLKNGTPEALVAAIRVVARGEGLIAPELTRRVIAAFARPGGEPTTTAVALSD 165 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ EIA L L TV ++ KL +R+QA+ A G Sbjct: 166 LTPREHEVLVLVASGASNAEIAANLRLGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGV 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|88856002|ref|ZP_01130664.1| two-component response regulator [marine actinobacterium PHSC20C1] gi|88814869|gb|EAR24729.1| two-component response regulator [marine actinobacterium PHSC20C1] Length = 209 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 1/111 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT-DFLELFKKRSSAARNLTERETSCLQL 184 +GY++ + + + A G + L + + R A L+ERET L L Sbjct: 96 AGASGYLLKAAPQDEILAGLRSVARGEVALAPSIAALLVKRMREPARVALSERETQVLAL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G ++ IA L +S TV +L KLD +R +A+ KA+ G + Sbjct: 156 VAEGNSNRAIAAALFVSEATVKTHLIHVFEKLDVKDRTRAVTKAMELGLLA 206 >gi|317122209|ref|YP_004102212.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315592189|gb|ADU51485.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 280 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 14/129 (10%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN--- 173 FP+ L GYV+ S L + + G V + +R Sbjct: 150 FPI-LEAGAAGYVLKRSAATELVSALRAVVQGHTILHPDVAAKVVSGAARRQKGGGPQEG 208 Query: 174 -------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTERET L L G T++EIA++L +S+ TV A+ + KLD + ++ Sbjct: 209 VPRRVDGLTERETEVLTLIAQGLTNQEIADRLFISIKTVQAHRSNIMEKLDLHDAVELTK 268 Query: 227 KAIRFGYIC 235 AIR G I Sbjct: 269 YAIRHGLIS 277 >gi|300741753|ref|ZP_07071774.1| two-component system response regulator [Rothia dentocariosa M567] gi|300380938|gb|EFJ77500.1| two-component system response regulator [Rothia dentocariosa M567] Length = 250 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 27/137 (19%) Query: 126 FHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAA------- 171 +G+++ + L + + A A +++ + + + S Sbjct: 114 AGASGFLLKDAPPEELLGAIRTIHRGDAVIAPSATRRLLEHMIPVLEVHSEQDSANIAPT 173 Query: 172 -------------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L+ RE L+L G ++ EI+ L LS T+ ++ KLDA Sbjct: 174 SQEEPQLLHQELMQTLSPREHEVLRLIAQGLSNVEISRALVLSEATIKTHVSHVLAKLDA 233 Query: 219 VNRIQAIAKAIRFGYIC 235 +R+QA+ A G + Sbjct: 234 RDRVQAVIMAYEAGIVS 250 >gi|256375685|ref|YP_003099345.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255919988|gb|ACU35499.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 238 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRS---SAARNLTERETS 180 Y++ ++ +++ + V G Y + L + + R L+ RE Sbjct: 124 AGAQAYLLKSASPMVVTDGVRRVLDGGVYADPSVAPVLAAGTRVPGTDNTPRELSAREVE 183 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQL DG +++EI E L LS TV ++L KL +R Q +A A+R G I Sbjct: 184 VLQLVADGQSNKEIGEALSLSALTVKSHLSRIGRKLGTGDRAQMVALAMRAGVI 237 >gi|228953499|ref|ZP_04115544.1| Two-component protein Kinase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806238|gb|EEM52812.1| Two-component protein Kinase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 500 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 380 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEKKETPQSKATAYEL 439 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 440 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVSNKEEAVQKALEIGII 499 >gi|224552984|gb|ACN54742.1| PagR [Pantoea agglomerans] Length = 210 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 60/185 (32%), Gaps = 10/185 (5%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG---QLSVRLEGGL 112 N + + DI + D + + W E VI S G Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFW----ENNVILSGGYNLTRIFNESNQY 83 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN--EVIIEAHGACYQVITDFLELFKKRSSA 170 F G FP+ + + S+ + + E G + L L+ + Sbjct: 84 NIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSEIVGFLVNLHQKTLNLYSQHYQK 143 Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ G G T E+A L ++ TV ++G+ KL N A+ Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGT 203 Query: 230 RFGYI 234 + Sbjct: 204 ELRLL 208 >gi|83593514|ref|YP_427266.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576428|gb|ABC22979.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 239 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 55/226 (24%), Positives = 82/226 (36%), Gaps = 22/226 (9%) Query: 21 LHLIQNRIKARNFALYTINSALDFPRRQQ------LICELHNYDLDSGDIPNILIETYGD 74 L + A FA + PR I E N +D +I D Sbjct: 12 LDAACRQAMALGFAAVLYD-YSPVPRAHDGTLITPTILETRNLPVDMAEIWCKQGYYQID 70 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGG--------LLPFAGIAFPVRLGF 126 P +W +++ + + +R E G+ P+R G Sbjct: 71 PVQDAALLVSAPFVWSHEGDQSDVMAR---VLRAEHRPVLDYLRHRGLTRGVTVPIRCGE 127 Query: 127 HKNG-YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS---AARNLTERETSCL 182 + E + + G Q D + +S +LT RE CL Sbjct: 128 GALATFTAIAPSGAPFPPEDRLSSLGLLGQSFHDRVYPGFPAASHLCPVVHLTRRERECL 187 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L G+G T++EIA ++ SV TV +L +AT KL A NR QAIA+A Sbjct: 188 ALCGEGLTAKEIAYRIDRSVPTVVFHLSAATRKLGARNRFQAIARA 233 >gi|326330564|ref|ZP_08196871.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325951639|gb|EGD43672.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 205 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 45/109 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + ++ + A G + K S LT+RE L+ Sbjct: 97 AGAAGYLLKDVDPEVIVEGIRRAAAGDVVLAPDLAARVLKGMRSPLPRLTDREIEVLRHL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EIA L ++ TV ++L KLD +R +AI A G I Sbjct: 157 ARGATNREIARTLFVTEATVKSHLAHIFTKLDVDSRSRAIHVAQETGLI 205 >gi|21244711|ref|NP_644293.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21110402|gb|AAM38829.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 200 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + + G +VI L + A L+ERE + L+ Sbjct: 94 LDAGVAGYLLKDAPAEQLVDALRQVHRGG--RVIDPQLAI--DAWVEADPLSERERTVLR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG+G ++ EIA++L LS TV YL KL NRI+A A + G++ Sbjct: 150 LAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 200 >gi|307327309|ref|ZP_07606496.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886988|gb|EFN17987.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 212 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 5/112 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCL 182 GY++ + L + + A G +V + ++ LT+RET L Sbjct: 100 AGAIGYLLKDTTREQLVDAIHAAARGETVLAPRVAEKLVARMRR--PVQEPLTDRETEVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI +L ++ TV +L KLD +R +A+ A+ G + Sbjct: 158 GAVADGLTNAEIGRRLVIAEATVKTHLLRLFAKLDVNDRTRAVVVAMERGLL 209 >gi|322374953|ref|ZP_08049467.1| DNA-binding response regulator [Streptococcus sp. C300] gi|321280453|gb|EFX57492.1| DNA-binding response regulator [Streptococcus sp. C300] Length = 199 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEVVMTHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS TV Y+ + KLDA NR +A A G++ Sbjct: 151 AQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|302864805|ref|YP_003833442.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302567664|gb|ADL43866.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 220 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L +G+++ +E L + V + A G ++I +F + R L Sbjct: 93 LRAGASGFLVKDTEPAELIHGVRVVARGDALIAPAVTRRLIAEFAARTRHPDPGPRLNAL 152 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE L L G +++EIA +L LS T ++ K +R Q + A G Sbjct: 153 TEREREVLALVAAGLSNDEIAARLVLSPATAKTHVSRIMTKTRVRDRAQLVVLAYESGL 211 >gi|227502186|ref|ZP_03932235.1| response regulator [Corynebacterium accolens ATCC 49725] gi|227077010|gb|EEI14973.1| response regulator [Corynebacterium accolens ATCC 49725] Length = 205 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 42/109 (38%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L V+ A L ++ ++L+ RE L+ Sbjct: 97 AGAMGYLLKDSPEEELHEAVLNTAARRRTLAPEVVNLLAQRVGQPEQSLSTRELEILRAL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A +L +S TV +L KL R A+ A I Sbjct: 157 ATGSSNKELANQLFISEATVKTHLIHIYQKLGVDTRTAAVTVARERKLI 205 >gi|297162688|gb|ADI12400.1| two component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA--RNLTER 177 +G+++ +E L V G ++I +F K+ + AA LTER Sbjct: 102 GASGFLVKDTEPEELLRAVRAVVAGDALLSPGVTRRLIAEFAARSKEPAPAAVLAELTER 161 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L G G ++EEIA +L +S T ++ +KL A +R Q + A G + Sbjct: 162 EREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMIKLGARDRAQLVVLAYESGLV 218 >gi|293364262|ref|ZP_06610988.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307702507|ref|ZP_07639461.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|291317108|gb|EFE57535.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] gi|307623919|gb|EFO02902.1| DNA-binding response regulator [Streptococcus oralis ATCC 35037] Length = 199 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEVVMTHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS TV Y+ + KLDA NR +A A G++ Sbjct: 151 AQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|291299028|ref|YP_003510306.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568248|gb|ADD41213.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 52/118 (44%), Gaps = 11/118 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L G++ ++ + + V + A G +VI F R+ Sbjct: 97 LEHGAAGFLTKDTDPEFILHAVRVVAAGESLLSPGVTRRVIDRFTRGRHARTGEPHPGLD 156 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RET L G +++EIAE+L +S TV ++G A +KL A +R Q + A R Sbjct: 157 SLTARETEILGWVATGLSNDEIAERLVVSPATVRTHVGRAMMKLRARDRAQLVVIAYR 214 >gi|254462674|ref|ZP_05076090.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacterales bacterium HTCC2083] gi|206679263|gb|EDZ43750.1| autoinducer-binding transcriptional regulator LuxR [Rhodobacteraceae bacterium HTCC2083] Length = 165 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 34/158 (21%), Positives = 66/158 (41%), Gaps = 12/158 (7%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS-------EF 138 P+ W+ + + +++ + G + P+R + Y +FT+ ++ Sbjct: 11 PVDWKRLDWSS--KAARGFRAEALEYGVGNQGFSIPMRGPNGQ--YALFTASHHCSDEDW 66 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAEK 197 N+ + + LE R A + L+ RET + G+ + A+ Sbjct: 67 QTFKNKHRRQLILLAHFFNQKALEFEPDRVPEALKTLSPRETDAMTFLAMGFNRAKAADT 126 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + +S HT+ Y+ SA KL A+N A+A+A+ G I Sbjct: 127 MEISEHTLRVYIESARFKLGAINTTHAVARAMSHGLIV 164 >gi|332162558|ref|YP_004299135.1| nitrate/nitrite response regulator protein NarP [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666788|gb|ADZ43432.1| nitrate/nitrite response regulator protein NarP [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 202 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE +L + + + G +T +L ++ + LTERE L Sbjct: 91 DAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQYLSSRDEQVNPFSELTERELDVL 150 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 Q G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 151 QEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 192 >gi|315612509|ref|ZP_07887422.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] gi|315315490|gb|EFU63529.1| DNA-binding response regulator [Streptococcus sanguinis ATCC 49296] Length = 199 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEVVMTHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS TV Y+ + KLDA NR +A A G++ Sbjct: 151 AQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|313901612|ref|ZP_07835050.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313468115|gb|EFR63591.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 272 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 14/129 (10%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA-- 170 FP+ L GYV+ S L + + G +V++ K + Sbjct: 142 FPI-LEAGAAGYVLKRSAATELVSALRAVVQGHTILHPDVAAKVVSGAARRQKGEGAGEG 200 Query: 171 ----ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTERET L L G T++EIA++L +S+ TV A+ + KLD + ++ Sbjct: 201 APRRVDGLTERETEVLTLIAQGLTNQEIADRLFISIKTVQAHRSNIMEKLDLHDAVELTK 260 Query: 227 KAIRFGYIC 235 AIR G I Sbjct: 261 YAIRHGLIS 269 >gi|310643909|ref|YP_003948667.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309248859|gb|ADO58426.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 216 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 6/114 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK---RSSAARNLTERET 179 Y++ TS +A+ + A G QV + + F++ + A LT+RE Sbjct: 101 AGAFSYLLKTSRASEIADAIRAAARGQSVLESQVASKMMNRFRQPQAEAPAHTELTDREM 160 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G ++++IA++L + + TV ++ + KL +R QA A + G Sbjct: 161 EVLRLLAQGKSNQDIADELIIGIKTVKFHVTNLLAKLGVEDRTQAAIYAYKNGL 214 >gi|269795278|ref|YP_003314733.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269097463|gb|ACZ21899.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 216 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA----- 171 L +G++ +E L + V A G A V+ + Sbjct: 93 LQAGADGFLSKVAEPAELVDAVRGVAAGDVMLSQTATRAVVQHVARAPRPAEPDPVLAQQ 152 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE + ++ A G + +I+ +L +S HTV +LG A KLD +R Q + A R Sbjct: 153 VASLTPRERTIVKQAAQGLDNLQISRQLHISPHTVKTHLGHAMAKLDVRDRTQMVVVAFR 212 Query: 231 FGYI 234 G + Sbjct: 213 AGLV 216 >gi|229821508|ref|YP_002883034.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567421|gb|ACQ81272.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 225 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 53/121 (43%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-----------QVITDFLELFKKRSSAAR 172 L +G+++ TS LA V A G + + S AA+ Sbjct: 101 LAAGASGFLLKTSRPDQLAAAVRSVAAGDALLSPEVTRAVIERAVAREAGPPPAPSPAAQ 160 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++EIA +L + TV ++ + KL +R+QA+A A R G Sbjct: 161 ALTERELVVLRLLARGLNNDEIAAELVVGRATVKTHVSNVLAKLQLRDRVQAVAYAYRHG 220 Query: 233 Y 233 Sbjct: 221 L 221 >gi|331695587|ref|YP_004331826.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326950276|gb|AEA23973.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 219 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 13/121 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------------ACYQVITDFLELFKKRSSAAR 172 GY++ ++ L + V A G Y+ + D A Sbjct: 96 AGATGYLVKSAGADELLDAVRRTADGYPVFTPGLAGLVLGEYRRLADEPARRPAGDPAVP 155 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L+L G T+ I E+LGLS TV +++ + KL NR Q + AI G Sbjct: 156 ALTERETGVLRLVAKGLTARAIGERLGLSHRTVESHVQNTLRKLQLHNRAQLVRYAIEQG 215 Query: 233 Y 233 Sbjct: 216 L 216 >gi|313764565|gb|EFS35929.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313807407|gb|EFS45894.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313816106|gb|EFS53820.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818453|gb|EFS56167.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313820216|gb|EFS57930.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313822975|gb|EFS60689.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313827995|gb|EFS65709.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|314915562|gb|EFS79393.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918484|gb|EFS82315.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314919972|gb|EFS83803.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314925444|gb|EFS89275.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314931985|gb|EFS95816.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314955854|gb|EFT00254.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314958335|gb|EFT02438.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314960110|gb|EFT04212.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314978316|gb|EFT22410.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314987819|gb|EFT31910.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314990039|gb|EFT34130.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315084426|gb|EFT56402.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315085766|gb|EFT57742.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315088816|gb|EFT60792.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315098426|gb|EFT70402.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101218|gb|EFT73194.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315108440|gb|EFT80416.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327332048|gb|EGE73785.1| two-component system response regulator [Propionibacterium acnes HL096PA3] gi|327453760|gb|EGF00415.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328753578|gb|EGF67194.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] Length = 218 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARNLT 175 L +G+++ ++ L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|111023055|ref|YP_706027.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110822585|gb|ABG97869.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 208 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 42/107 (39%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ S + V A G L ++ LT RE L L Sbjct: 98 DAGAIGYLLKDSTPQEIFAAVRGAAAGQSVLSPPVASRLLQQMQRPEEALTPREAELLTL 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +G T++E+ + L +S TV +L KL R A++ A+R Sbjct: 158 MAEGMTNKELGKALFISEATVKTHLAHIYAKLGVDTRAAAVSVALRR 204 >gi|330860763|emb|CBX71053.1| nitrate/nitrite response regulator protein narP [Yersinia enterocolitica W22703] Length = 236 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE +L + + + G +T +L ++ + LTERE L Sbjct: 125 DAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQYLSSRDEQVNPFSELTERELDVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 Q G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 185 QEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 226 >gi|270264188|ref|ZP_06192455.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13] gi|270041837|gb|EFA14934.1| transcriptional activator protein EsaR [Serratia odorifera 4Rx13] Length = 249 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 67/223 (30%), Gaps = 25/223 (11%) Query: 37 TINSALDFPRRQQLICELHNYD--LDSGDIPNILIETY-------GDDFLFHFNSGLLPI 87 S+L P + N L P+ ++ Y D + P Sbjct: 21 RKLSSLGSPEYAYTVVRKKNPSDVLIISSYPDEWVDLYRANNFQLTDPVILTAFKRTSPF 80 Query: 88 IWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI--FTSEFLMLANEV 145 W + + L G F + + + + + Sbjct: 81 AWDE-NITLMSDLKFTKIFSLSKQYNIINGFTFVLHDHMNNLALLSVIIANNGQEELEKR 139 Query: 146 IIEAHGACYQVITDFLELFKKRSSAARN-------------LTERETSCLQLAGDGYTSE 192 + GA ++ D E + + AA + T RE L A G T Sbjct: 140 LSSERGAMQMLLIDINEQMYRLAGAASSSNQKYHTDADKPIFTPRENEVLYWASMGKTYG 199 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 EIA G+SV TV ++G+ VKL N QAI + I Sbjct: 200 EIAAIAGISVSTVKFHMGNIVVKLGVSNARQAIRLGVELELIT 242 >gi|241764600|ref|ZP_04762616.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] gi|241365963|gb|EER60589.1| two component transcriptional regulator, LuxR family [Acidovorax delafieldii 2AN] Length = 263 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF---------KKRSSAARNL 174 GY+ S F + V+ +G + L+ F +++ A L Sbjct: 144 GATGYLSKNSWFGSYSQAVLQVMNGGASITPNLARRLLQRFDTTRGDAPKRRQPDDADRL 203 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + RE L++ GYTS EI +L +S TVN ++ + KL R QA+ A G Sbjct: 204 SAREKEILRMVASGYTSTEIGSRLLISCMTVNTHIRNIYRKLQVRTRAQAVRFASLRGL 262 >gi|229018500|ref|ZP_04175361.1| Two-component protein Kinase [Bacillus cereus AH1273] gi|229024758|ref|ZP_04181196.1| Two-component protein Kinase [Bacillus cereus AH1272] gi|228736532|gb|EEL87089.1| Two-component protein Kinase [Bacillus cereus AH1272] gi|228742774|gb|EEL92913.1| Two-component protein Kinase [Bacillus cereus AH1273] Length = 592 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETPQSKATAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +AI KA+ G I Sbjct: 532 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAILKALEIGII 591 >gi|221633346|ref|YP_002522571.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] gi|221155795|gb|ACM04922.1| transcriptional regulatory protein degU [Thermomicrobium roseum DSM 5159] Length = 246 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTERE 178 Y++ S+ L + + A G ++ ++ L K + ++L++RE Sbjct: 122 AGARSYLVKNSKPEELLRAIHVAAEGGATIDPDLAPILMREYQRLLTKAPTRGQDLSDRE 181 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L+L GY + +IA+ L L+ TV L + KL +R QA+ AI G + Sbjct: 182 LTMLRLLAQGYNNRQIADALNLAESTVKNNLSALFQKLGVRDRTQAVIYAISHGLV 237 >gi|192361059|ref|YP_001981583.1| DNA-binding response regulator, LuxR family [Cellvibrio japonicus Ueda107] gi|190687224|gb|ACE84902.1| DNA-binding response regulator, LuxR family [Cellvibrio japonicus Ueda107] Length = 198 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 4/110 (3%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +G+++ + L + + G +VI L + + L ++E L+L Sbjct: 93 DMGVSGFLLKDAPSDQLIDAIYKIMEGK--RVIDGELAMMALGET--DPLNDKERRALRL 148 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G T+ EI+ L LS TV YL A KL+A NR+ A A + G+I Sbjct: 149 AAEGKTTAEISNTLHLSEGTVRNYLSEAIAKLNAANRVDAARIARQKGWI 198 >gi|146277715|ref|YP_001167874.1| two component LuxR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17025] gi|145555956|gb|ABP70569.1| two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides ATCC 17025] Length = 210 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 49/111 (44%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G V+ T+ L N + G Y + + + S+ LTE+E + Sbjct: 100 LAAGASGIVLKTTPVRSLGNAIRFMHAGEHYLPLELARDRRQAPDSSGGRLTEKEMLVMS 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++EIA L L+ T+ ++ S KL A NR QA+ A G I Sbjct: 160 YLAEGRQNKEIAHGLNLAEPTIKMHVKSICKKLGATNRTQAVVTARNLGII 210 >gi|322392560|ref|ZP_08066020.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] gi|321144552|gb|EFX39953.1| DNA-binding response regulator [Streptococcus peroris ATCC 700780] Length = 199 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L Sbjct: 95 AGVDAYVLKERSIAELMQTLHTVLEGRKEY----SPELMEVMMTHPNPLTEQEVAVLHGV 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS TV Y+ + KL A NR +A A G++ Sbjct: 151 AQGLSNQEIADQLYLSNGTVRNYMTNILSKLGASNRTEAAKTAEEEGWL 199 >gi|239918654|ref|YP_002958212.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839861|gb|ACS31658.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 230 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 17/126 (13%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK----------KRS 168 +G+++ + L + G +++T + ++ Sbjct: 103 AGASGFLLKDAPPEELLAAIRTVHRGDAVIAPSTTRRLLTHMAPRLRSDQVRSAECEEQQ 162 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A +LT RE L L G + EIA +L LS TV ++G KL A +R+QA+ A Sbjct: 163 AAVASLTPREREVLVLMAQGAANLEIAAELVLSEATVKTHVGRVLAKLGARDRVQAVLIA 222 Query: 229 IRFGYI 234 R G + Sbjct: 223 HRAGLV 228 >gi|260905348|ref|ZP_05913670.1| two-component system response regulator [Brevibacterium linens BL2] Length = 224 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARNLTER 177 +G+++ +E + L V + A G Y + L L + + LT+R Sbjct: 100 AGASGFLLKDTEPVDLIRAVRVVAEGEALLSPEVTRYLLSRMSLGLRAEPAKHLDVLTQR 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L L G G +++EIA +L LS T ++ K+ A +R+ + A G + Sbjct: 160 EREVLALVGQGLSNDEIAAQLVLSPLTAKTHVSRIMSKVAARDRVHLVVLAYESGLVS 217 >gi|56421302|ref|YP_148620.1| hypothetical protein GK2767 [Geobacillus kaustophilus HTA426] gi|56381144|dbj|BAD77052.1| hypothetical protein [Geobacillus kaustophilus HTA426] Length = 500 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 40/65 (61%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +L+ RE L+L +G ++ E A++L LS +TV Y+ + K++A NR +AI KAI Sbjct: 436 PTPHLSPREIEVLKLVAEGASTYEAAKRLHLSEYTVRDYVSAILQKMNAKNRTEAIVKAI 495 Query: 230 RFGYI 234 R G I Sbjct: 496 RDGII 500 >gi|330897659|gb|EGH29078.1| regulatory protein, LuxR [Pseudomonas syringae pv. japonica str. M301072PT] Length = 240 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 74/228 (32%), Gaps = 15/228 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + L ++ + + + L N D GD Sbjct: 24 ELDGQAAIENALEWLRRECNSERAMFFQFKGPV------LLTFITSNVDDAWGDAYRQHD 77 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHK 128 D + + + L + WQ + + + V L + G H Sbjct: 78 LITQDPVIRCYRNQLGFLNWQDAFRQYPVTAVYDALVDTCELLPAISYGYT------NHC 131 Query: 129 NGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G TS + + E ++ + + +R LT RE LQ A Sbjct: 132 RGADSVTSVCTLGEVERSISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWAR 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 192 DGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|331267046|ref|YP_004326676.1| DNA-binding response regulator [Streptococcus oralis Uo5] gi|326683718|emb|CBZ01336.1| DNA-binding response regulator [Streptococcus oralis Uo5] Length = 199 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEVVMTHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS TV Y+ + KLDA NR +A A G++ Sbjct: 151 AQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIATESGWL 199 >gi|264678688|ref|YP_003278595.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|262209201|gb|ACY33299.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] Length = 223 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 12/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRS---------SAARNL 174 GY++ S F A V+ A+G + L L + S L Sbjct: 104 GAVGYLLKNSWFGDYAQAVLQVANGGASITPSLAKKILSLVSRSQTYVVPASNLSKEEKL 163 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +ERE L+L GY+S EI+ +L +S TV+ ++ + KL A R A+ A G I Sbjct: 164 SEREIEILKLIACGYSSPEISTQLKISTMTVSTHVKNMYRKLQAKTRAHAVKAASLRGLI 223 >gi|302530267|ref|ZP_07282609.1| two-component system response regulator [Streptomyces sp. AA4] gi|302439162|gb|EFL10978.1| two-component system response regulator [Streptomyces sp. AA4] Length = 217 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFL--ELFKKRSSAARNL 174 L +G+++ + + + G +++ +L L Sbjct: 94 LRAGASGFLVKDAPSDEMLVAIRGVLRGDAMVSPSVTKRLLDRYLSAHRTPLDEQKLETL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L L G ++ EIA L + TV ++G KL +R+ A+ A G + Sbjct: 154 TEREKDVLGLIARGLSNTEIAGTLFIGETTVKTHVGRLLNKLGLRDRVHAVVFAYESGLV 213 >gi|288574154|ref|ZP_06392511.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569895|gb|EFC91452.1| two component transcriptional regulator, LuxR family [Dethiosulfovibrio peptidovorans DSM 11002] Length = 214 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 42/118 (35%), Gaps = 6/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTER 177 L G+++ L V G Y ++ LT R Sbjct: 94 LKVGALGFLLKDCASTELVEAVRKVMDGEIYLGPSISHIVAKLYVSSLHDPDDIEPLTPR 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L L +G T+ E+AE+L LS+ TV + KL N + AIR G I Sbjct: 154 EKEILMLLAEGNTNREVAERLHLSIKTVGTHRQHIMNKLKLKNLADLVKYAIRNGMIS 211 >gi|328883924|emb|CCA57163.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 222 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 15/127 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G+++ ++ L + A G +++ ++ + +A Sbjct: 94 LRAGASGFLVKDAQPEELLAGIRAVASGDAVVAPSLTRRLLDAYIHHLPQSPTADPDPED 153 Query: 173 ----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE L + G G+T+ EIAE+L L+ TV ++G K A +R+QA+ A Sbjct: 154 PRLATLTEREREILTVIGQGWTNTEIAERLHLAESTVKTHVGRILAKTGARDRVQAVILA 213 Query: 229 IRFGYIC 235 + Sbjct: 214 YDTQLVT 220 >gi|302537227|ref|ZP_07289569.1| two-component system response regulator [Streptomyces sp. C] gi|302446122|gb|EFL17938.1| two-component system response regulator [Streptomyces sp. C] Length = 242 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 14/125 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR---- 172 L +G+++ L + V + A G ++I ++ + + ++ Sbjct: 94 LHAGASGFLLKDVRRDDLVHAVRVVAAGESLLAPSVARRLIEEYTAVTARPAAPDPLAAE 153 Query: 173 ---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L G G ++ EIA L +S HTV +++G+ KL +RIQA+ A Sbjct: 154 RLGVLTARERETLLHLGRGLSNAEIAAALVVSEHTVKSHVGNVLSKLGLRDRIQAVICAY 213 Query: 230 RFGYI 234 G I Sbjct: 214 ETGLI 218 >gi|296118498|ref|ZP_06837076.1| DNA-binding response regulator, LuxR family [Corynebacterium ammoniagenes DSM 20306] gi|295968397|gb|EFG81644.1| DNA-binding response regulator, LuxR family [Corynebacterium ammoniagenes DSM 20306] Length = 206 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S +L + V+ G L ++ ++L+ RE LQ Sbjct: 98 AGALGYLLKDSPEQVLHDAVVATVEGRRTLSPEVAGLLAERVGRPQQSLSAREIEILQAL 157 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++++A+++ +S TV +L KL NR A+ A I Sbjct: 158 ATGASNKQLAKQMFISEATVKTHLIHIYQKLGVDNRTAAVTVARERKLI 206 >gi|291003373|ref|ZP_06561346.1| two component transcriptional regulator, LuxR family protein [Saccharopolyspora erythraea NRRL 2338] Length = 221 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 52/114 (45%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRS---SAARNLTERETS 180 Y++ ++ +++ + V G Y + L + + R L+ RE Sbjct: 107 AGAQAYLLKSASPMVVTDGVRRVLDGGVYADPSVAPVLAAGTRVPGTDNTPRELSGREVE 166 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQL DG +++EI E L LS TV ++L KL +R Q +A A+R G I Sbjct: 167 VLQLVADGRSNKEIGEALNLSALTVKSHLSRIGRKLGTGDRAQMVALAMRAGVI 220 >gi|317129803|ref|YP_004096085.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474751|gb|ADU31354.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 210 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN--LTERE 178 L Y++ TS+ +A+ + G +V + +K+ A + LTERE Sbjct: 94 LEAGATSYMLKTSKAKDIADAIRATYGGQSILEPEVTGKIMSQMRKKQEAHLHDQLTERE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G ++EIA++L +++ TV ++ + KL+ +R QA+ A + I Sbjct: 154 MEVLKLMTEGKANQEIADELYIALKTVKVHVSNILNKLEVHDRTQAVIYAFKNNLI 209 >gi|226310595|ref|YP_002770489.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093543|dbj|BAH41985.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 209 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 5/107 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--KRSSAARNLTERETS 180 Y++ TS +A + A G +V + F+ + S LT RE Sbjct: 96 AGAFSYLLKTSRAAEIAKAIRSAAAGEPVLESRVAGKIMARFRHGQESHPHEQLTPRELE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+L G G +++EIA++L + + TV ++ + KL+ +R QA Sbjct: 156 VLKLIGQGKSNQEIADELIIGIKTVKTHVSNILAKLNVEDRTQAAIY 202 >gi|145225590|ref|YP_001136268.1| two component LuxR family transcriptional regulator [Mycobacterium gilvum PYR-GCK] gi|315445943|ref|YP_004078822.1| LuxR family transcriptional regulator [Mycobacterium sp. Spyr1] gi|145218076|gb|ABP47480.1| two component transcriptional regulator, LuxR family [Mycobacterium gilvum PYR-GCK] gi|315264246|gb|ADU00988.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. Spyr1] Length = 209 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 1/107 (0%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY++ + L ++ H + + A + LT+RE+ L L Sbjct: 102 GASGYLLKSISSEDLVEQLESV-HSGKTAIDPTMAARAVEWPGARQGLTQRESEILALVV 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G ++ IA KL + TV +L S KL +R A+A A+R G Sbjct: 161 NGLSNRAIAAKLIIGDETVKTHLSSIYRKLGVSDRTAAVATALREGI 207 >gi|331696674|ref|YP_004332913.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951363|gb|AEA25060.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 224 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS------AARNLTER 177 L G+++ + + + V A G EL A R LT+R Sbjct: 101 LRAGATGFLLKRARPADIVSAVRTVASGESLLFPAAVRELVAAVGPDTGDRLAGRGLTDR 160 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E+ L+ G ++ EIA +L L V TV ++G+ KL +R QA+ A G++ Sbjct: 161 ESEVLRGMARGLSNAEIAAELVLGVETVKTHVGNVLAKLGVRDRTQAVVAAFESGFV 217 >gi|318606649|emb|CBY28147.1| nitrate/nitrite response regulator protein [Yersinia enterocolitica subsp. palearctica Y11] Length = 236 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE +L + + + G +T +L ++ + LTERE L Sbjct: 125 DAGADGYLLKDSEPEILLENIRLASKGENVFSDAVTQYLSSRDEQVNPFSELTERELDVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 Q G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 185 QEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 226 >gi|298486382|ref|ZP_07004444.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298159110|gb|EFI00169.1| DNA-binding HTH domain-containing protein [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 238 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 14/181 (7%) Query: 63 DIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 ++ + + Y D + + + L + WQ + + + + V L Sbjct: 62 NVDDAWGKAYRQRGLITQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLP-- 119 Query: 116 AGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 A H G TS + + E ++ + + +R Sbjct: 120 ---AISYGYMNHCRGADSVTSVCTLGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSRG 176 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ G Sbjct: 177 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 236 Query: 234 I 234 I Sbjct: 237 I 237 >gi|302867758|ref|YP_003836395.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302570617|gb|ADL46819.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 222 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN------- 173 L + +++ + LA V + A G V L+ + R A Sbjct: 95 LRAGASAFLLKDTRPADLAEAVRVVARGEALLAPTVTRRLLDRYADRLPAPAPAGDVLAV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L ++ EIA +L LS TV ++ + KL +RIQA+ A G Sbjct: 155 LTAREREVLTLTARALSNAEIAARLHLSTATVKTHVSAILTKLGLRDRIQAVVLAYDTGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|239980308|ref|ZP_04702832.1| two-component system response regulator [Streptomyces albus J1074] gi|291452173|ref|ZP_06591563.1| two-component system response regulator [Streptomyces albus J1074] gi|291355122|gb|EFE82024.1| two-component system response regulator [Streptomyces albus J1074] Length = 229 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARN--- 173 L +G+++ L + + A +++ F + S+A R+ Sbjct: 96 LRAGASGFMLKDVPPSELLTAIRSVHSGDAVVAPSTTRRLLDRFAPMLPDASAAPRHAGL 155 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + L G ++ EIA L LS TV ++G KL +R+Q + A Sbjct: 156 DRLTGREREVMVLVAQGLSNGEIAAHLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 215 Query: 232 GYI 234 G + Sbjct: 216 GLV 218 >gi|329937029|ref|ZP_08286658.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329303636|gb|EGG47521.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 224 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN-LT 175 L GYV+ + L G A +I +FL+ + + + LT Sbjct: 104 LKAGACGYVLKSVADRDLVEACRAAVRGEPFLYPGAVTALIRNFLDRVRSGEEVSDSVLT 163 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G++S+EIA+ L +S+ TV + + KL +R++ AIR G + Sbjct: 164 PREEEVLKLIAEGHSSKEIADTLFISIKTVQRHRANLLHKLGLRDRLELTRYAIRAGLV 222 >gi|223939339|ref|ZP_03631218.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223891943|gb|EEF58425.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 220 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + G I L ++ +LT RE + L L Sbjct: 111 AGAKGYLLKDAAREELLECIRKVYSGETS--IPPSLVTKLAAGISSESLTSRELAVLSLL 168 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EI KL +S TV ++L S KL+ ++R +AIA A R G + Sbjct: 169 ALGKSNKEIGVKLYISETTVKSHLRSIFAKLNVISRTEAIATASRRGLV 217 >gi|144899494|emb|CAM76358.1| regulatory protein, LuxR [Magnetospirillum gryphiswaldense MSR-1] Length = 253 Score = 99.3 bits (246), Expect = 4e-19, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 72/208 (34%), Gaps = 6/208 (2%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F + + + + L+ E I + + D + PIIW Sbjct: 47 GFEMMPQSGSYWRDHKSGLMLESLRSGYVEAKIATGMADA--DFYYQAAKCNPAPIIWGD 104 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVR--LGFHKNGYVIFTSEFLMLANEVIIEA 149 + + + S ++ G P GF + + + T + + + Sbjct: 105 LSLSDDADEQERRSFEVDCDFGILTGATLPASFADGFGASAFSVHTPDLSFAGFDRMWRE 164 Query: 150 HGACYQVITDFLELFKKRSSAAR--NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 +G + I ++ + L+ RE L +G ++IA L L TV Sbjct: 165 NGEAIRQIACAFDICMREDHMPDFFPLSPREQEILLRLTEGLRPQQIAFLLSLHEGTVEK 224 Query: 208 YLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++ SA KL A QA+A A+ FG I Sbjct: 225 HIESARRKLKAATVTQAVATALIFGLIA 252 >gi|270293402|ref|ZP_06199611.1| DNA-binding response regulator [Streptococcus sp. M143] gi|270278251|gb|EFA24099.1| DNA-binding response regulator [Streptococcus sp. M143] Length = 199 Score = 98.9 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEVVMTHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS TV Y+ + KLDA NR +A A G++ Sbjct: 151 AQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|239943004|ref|ZP_04694941.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989462|ref|ZP_04710126.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291446476|ref|ZP_06585866.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349423|gb|EFE76327.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 222 Score = 98.9 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G+++ + LA+ V + A G ++IT+F +L + A Sbjct: 98 LRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAETPRPPALARIG 157 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERET L L G ++ EIA L ++ T+ ++ VKL +R QA A Sbjct: 158 DLTERETEVLVLIAQGLSNAEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 217 Query: 233 YIC 235 + Sbjct: 218 LVT 220 >gi|312196246|ref|YP_004016307.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227582|gb|ADP80437.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 230 Score = 98.9 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNL------ 174 L +G+++ L V + G + +E F R S A L Sbjct: 101 LTAGASGFLLKDVSPEHLVAAVRLVRMGDALLAPAITRRLVERFASRDSGAARLHRDLSA 160 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+ G ++ E+A + LS TV ++ KL +R QA+ A G Sbjct: 161 LTPRELEVLEFLAQGLSNAELAARFQLSEATVKTHVARILAKLQVRDRAQAVIVAYETGL 220 Query: 234 IC 235 I Sbjct: 221 IT 222 >gi|271962480|ref|YP_003336676.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505655|gb|ACZ83933.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 207 Score = 98.9 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 39/110 (35%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ L + A G + ++ L+ RE L+L Sbjct: 95 DAGATGYLLKACPPEELFQGIRAAARGETVLSPRVATRMMRRMRDPGPALSAREVEILEL 154 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA +L ++ TV +L KL R A+ A+ I Sbjct: 155 LASGAGNREIARRLFITEATVKTHLVHIYGKLGVDTRTAAVTAAVERRLI 204 >gi|225871440|ref|YP_002747387.1| response regulator [Streptococcus equi subsp. equi 4047] gi|225700844|emb|CAW95568.1| putative response regulator [Streptococcus equi subsp. equi 4047] Length = 199 Score = 98.9 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 10/127 (7%) Query: 112 LLPFAGIAFPV-R---LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 ++ +G P+ L ++ + L + V A G QVI D +L ++ Sbjct: 79 MILISGFYEPLLHKRALDLGIKAFLPKECSYDELISTVYNVAKGN--QVIPD--DLLQRE 134 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S LTE E L+L D Y++E+I++KL +S TV+ ++ + KL+ +R+ A+ + Sbjct: 135 ESHL--LTESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVRE 192 Query: 228 AIRFGYI 234 AIR I Sbjct: 193 AIRLKLI 199 >gi|254442705|ref|ZP_05056181.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198257013|gb|EDY81321.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 200 Score = 98.9 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+V+ L + H V + S LT+RE L Sbjct: 92 AGAAGFVVKDMPLDNLIQGIRSV-HNDEQYVPPEIANRLS--SQVLSQLTKRELEVLAQV 148 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA +L L TV +L + KL +R QAI A++ G I Sbjct: 149 AKGRSNKEIANELNLVEGTVKVHLTNILSKLGVSDRTQAILAAVKRGLI 197 >gi|118468464|ref|YP_885258.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118169751|gb|ABK70647.1| DNA-binding response regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 215 Score = 98.9 bits (245), Expect = 4e-19, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN-LT 175 L +GYV+ + L G A +I DFL ++ + LT Sbjct: 95 LKAGASGYVLKSVADRDLLEACRATLRGEPFLYAGAITALIRDFLHRARQGGEPPDSILT 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +GY++ EIA L +S TV+ + + KL +R+ AIR G I Sbjct: 155 PREEEVLKLIAEGYSTREIAATLTISAKTVDRHRTNILAKLGLRDRLALTRYAIRAGLI 213 >gi|302549920|ref|ZP_07302262.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467538|gb|EFL30631.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----------RSSAAR 172 L +G+++ + + + V + A G +L + + Sbjct: 96 LRAGADGFLLKRARPAEIVHAVRLIAEGDSLLFPASVRQLAAEYGDEGGNRAARAAMERA 155 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L + TV +++ + KL A +R QA+ A G Sbjct: 156 QLTEREAEVLRLMARGLSNAEIAGRLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESG 215 Query: 233 YIC 235 ++ Sbjct: 216 FVA 218 >gi|221068174|ref|ZP_03544279.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220713197|gb|EED68565.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 253 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 11/118 (9%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--------ARNLT 175 GY++ S F V+ +G + L+ KR ++ + L+ Sbjct: 135 GATGYLVKNSWFGNYPQAVLQVVNGGASITPSLARRLLQRCDKRPASGAVPGSDMSDRLS 194 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L++ G TS EI L +S TVN ++ + KL +R QA+ A G+ Sbjct: 195 SRECEVLRMVASGNTSAEIGASLEISTMTVNTHIKNIYRKLQVRSRAQAVRFAYLRGW 252 >gi|157683240|gb|ABV64383.1| response regulator [Anabaena sp. L-31] Length = 228 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 12/121 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSS------AARN 173 GY + L + A GA + + I + + + S + Sbjct: 100 AGAQGYCLKGIVAEKLVLALRSVAAGASWWDETATREIRSSIAASQSQPSTENLIKSDHP 159 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G T++EIA L ++ TV ++ + KLD +R QA+ A++ Sbjct: 160 LTGRELEILSLLAQGKTNQEIATALYITPGTVRVHVHAILHKLDVSDRHQAVVLALQKRL 219 Query: 234 I 234 I Sbjct: 220 I 220 >gi|118619050|ref|YP_907382.1| two component transcriptional regulatory protein [Mycobacterium ulcerans Agy99] gi|118571160|gb|ABL05911.1| two component transcriptional regulatory protein [Mycobacterium ulcerans Agy99] Length = 218 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 9/116 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA--RNLTER 177 GY++ ++ LA+ V A G V+ ++ + + S+ +LTER Sbjct: 101 GATGYLVKSASKAELADAVRATAAGRAVFTPSLAGLVLGEYRRIAQTADSSQDRPSLTER 160 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ET L+ G ++++IAEKL LS TV ++ + KL NR++ AI G Sbjct: 161 ETEILRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQLANRVELTRYAIEHGL 216 >gi|253575534|ref|ZP_04852871.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251845181|gb|EES73192.1| two-component system response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 200 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 4/108 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 GY++ LA + G + + + +R LT RE L+LA Sbjct: 97 GVQGYLLKDESSDRLAEAIRRVKAGH-REASPELVFGSLRRD---NPLTAREQEILRLAA 152 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EIA L LS TV Y+ KL+ +RI+A+ A G+I Sbjct: 153 KGCTASEIAASLHLSYGTVRNYISEILNKLEVKSRIEAVRLAEENGWI 200 >gi|311111869|ref|YP_003983091.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] gi|310943363|gb|ADP39657.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] Length = 210 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G+++ + LA + H + V + + LTERET L+ Sbjct: 103 LAAGASGFMVKDTSASQLAEGIRRV-HAGMHVVDPALAA--ESLAYGESPLTERETEILR 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +AG G T+ I E+L LS TV +L SA KL+A NR +AI A G++ Sbjct: 160 VAGHGATARAIGEQLFLSPGTVRNHLSSAMAKLNASNRQEAIRIAADNGWL 210 >gi|294637446|ref|ZP_06715736.1| transcriptional activator protein CarR [Edwardsiella tarda ATCC 23685] gi|291089387|gb|EFE21948.1| transcriptional activator protein CarR [Edwardsiella tarda ATCC 23685] Length = 239 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 66/193 (34%), Gaps = 23/193 (11%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P+ + Y D + + + P +W + ++ L Sbjct: 45 SNYPDEWVTLYKEHHYQQIDPVVIYALRRVSPFLWDEKITVNAKLNLSKI-FSLAKKYQV 103 Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--------- 165 G F + ++ + + L+ ++ + GA ++ + E F Sbjct: 104 NKGYTFVLHDADNQLAMLSLMVDDHSLS--IVEQNQGALQMLLINAHERFMTGQRQLQVQ 161 Query: 166 ----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 K ++ + RE L A G T +EIA LG+ TV ++G+ KL +N Sbjct: 162 QHNIKSNNMENIFSARENEILYWASMGKTYQEIALILGIKSGTVKFHIGNVVKKLGVLNA 221 Query: 222 IQAIAKAIRFGYI 234 AI + I Sbjct: 222 KHAIRLGVELQLI 234 >gi|297563008|ref|YP_003681982.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847456|gb|ADH69476.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 241 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L GY++ LA V G + ++I +F EL K+ S+ Sbjct: 116 LKAGATGYLLKAISVTELAEAVRAIVKGDSFINPAMATKLIGEFAELAKQESAPPSRTTI 175 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RET L+L + EI E+L ++ +TV ++ KL +R +A A+R Sbjct: 176 PELTRRETEVLKLLARSLNNREIGERLFITENTVKNHVRKILEKLQVHSRTEAAIYAVRA 235 Query: 232 GYIC 235 Y+ Sbjct: 236 EYVS 239 >gi|220914644|ref|YP_002489953.1| LuxR family transcriptional regulator [Arthrobacter chlorophenolicus A6] gi|219861522|gb|ACL41864.1| two component transcriptional regulator, LuxR family [Arthrobacter chlorophenolicus A6] Length = 230 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 52/126 (41%), Gaps = 14/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR-------- 172 L + +++ L V + A G +V LE + + ++A Sbjct: 99 LQAGASAFLLKDVAPSELIQAVRVVASGDAVVAPRVTQRLLETYVRGAAAPAPAAQAPDP 158 Query: 173 ---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT RET L+ +G ++ EIA + LS TV ++ KL +R+QA+ A Sbjct: 159 LLGDLTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAY 218 Query: 230 RFGYIC 235 G + Sbjct: 219 ETGLVV 224 >gi|315080757|gb|EFT52733.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] Length = 228 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARNLT 175 L +G+++ ++ L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|282854131|ref|ZP_06263468.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282583584|gb|EFB88964.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|313813050|gb|EFS50764.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|314923106|gb|EFS86937.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314966874|gb|EFT10973.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981217|gb|EFT25311.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315091787|gb|EFT63763.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315103290|gb|EFT75266.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327327699|gb|EGE69475.1| two-component system response regulator [Propionibacterium acnes HL103PA1] Length = 218 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARNLT 175 L +G+++ +E L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNAEAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGSTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|229820968|ref|YP_002882494.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566881|gb|ACQ80732.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 208 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA + A G L + S LT RE L+L Sbjct: 98 AGARGYLLKEAPTEELAQAIRAAAAGEVALGPAVQRRLLGRMRSPGLALTRRELEVLELV 157 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++++A +L LS TV +L KL +R A+A A + G + Sbjct: 158 ARGRSNDDVARELFLSRATVKTHLAHVYDKLGVDSRTAAVAVARQRGLL 206 >gi|29829674|ref|NP_824308.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29606783|dbj|BAC70843.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 204 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + +++ + LA V G + + D + A LT+RE L+ A Sbjct: 99 AGADAFLVKDAPAAQLAEAVRKVLAG---ERVIDPTLAAAALAGGANPLTDREREVLRAA 155 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ E+A L LS TV YL +A KL NR +A+ A G++ Sbjct: 156 ADGATNAELATALHLSQGTVRNYLSTAIQKLAVRNRTEAVRTARDKGWL 204 >gi|300782912|ref|YP_003763203.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792426|gb|ADJ42801.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 214 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR---NLTER 177 + GY++ +E + V A + L F + + LT R Sbjct: 96 MRAGARGYLLKDAEPDEIIRAVRAVARREAIFGPDIANRVLAFFNQPPVSEPVFPELTGR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L G+++ IA L LS TV ++ + KL +R +AI +A G Sbjct: 156 EREVLALIAAGHSNSLIASTLCLSPKTVRNHISNVFAKLHVADRAEAIVRARDAGL 211 >gi|289626430|ref|ZP_06459384.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649584|ref|ZP_06480927.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 2250] gi|330866354|gb|EGH01063.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 240 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 14/181 (7%) Query: 63 DIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 ++ + + Y D + + + L + WQ + + + + V L Sbjct: 64 NVDDAWGKAYRQREFITQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLP-- 121 Query: 116 AGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 A H G TS + + E ++ + + +R Sbjct: 122 ---AISYGYMNHCRGADSVTSVCTLGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSRG 178 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ G Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 234 I 234 I Sbjct: 239 I 239 >gi|302525544|ref|ZP_07277886.1| two-component system response regulator [Streptomyces sp. AA4] gi|302434439|gb|EFL06255.1| two-component system response regulator [Streptomyces sp. AA4] Length = 222 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L G++ ++ +A + A G +++ R+ LT Sbjct: 104 LKAGARGFLTKDTDAEAIARALRSAAAGQSTVDGELQRRLVAAATSRAPVRTKELEGLTA 163 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+L G ++ EIA L +S TV ++ K +R QA+A A R G Sbjct: 164 REVEVLRLIAAGLSNTEIARTLVVSEATVKTHVNHLFSKAGLRDRAQAVAFAYRAGI 220 >gi|320329504|gb|EFW85496.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] gi|330889863|gb|EGH22524.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. mori str. 301020] gi|330986211|gb|EGH84314.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. lachrymans str. M301315] Length = 240 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 66/181 (36%), Gaps = 14/181 (7%) Query: 63 DIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 ++ + + Y D + + + L + WQ + + + + V L Sbjct: 64 NVDDAWGKAYRQREFITQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLP-- 121 Query: 116 AGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 A H G TS + + E ++ + + +R Sbjct: 122 ---AISYGYMNHCRGADSVTSVCTLGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSRG 178 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ G Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 234 I 234 I Sbjct: 239 I 239 >gi|182437202|ref|YP_001824921.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777832|ref|ZP_08237097.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178465718|dbj|BAG20238.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658165|gb|EGE43011.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 222 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G+++ + LA+ V + A G ++IT+F +L + A Sbjct: 98 LRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTRRLITEFSKLAEAPRPPALARIG 157 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERET L L G ++ EIA L ++ T+ ++ VKL +R QA A Sbjct: 158 DLTERETEVLVLIAQGLSNAEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 217 Query: 233 YIC 235 + Sbjct: 218 LVT 220 >gi|103488004|ref|YP_617565.1| LuxR family transcriptional regulator [Sphingopyxis alaskensis RB2256] gi|98978081|gb|ABF54232.1| transcriptional regulator, LuxR family [Sphingopyxis alaskensis RB2256] Length = 276 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 73/226 (32%), Gaps = 6/226 (2%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + ++L L R+ +FAL P +HNY + Sbjct: 43 ADREEQLFAALTKAAGRMGFDHFALAFDRRGTGEPA----SILVHNYPDAWAKVYVGFDL 98 Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 + D L W+ + + + + + G P L +G Sbjct: 99 SGTDPIRRASERSLTGFEWRHVDRYIPLSRGDRQLLSVARDSGVGDGFTVPRHLPGEASG 158 Query: 131 YVIFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDG 188 F + +++ A I EL R LTER+ C+ + G Sbjct: 159 TCSFAVRPHADIPADMLHAAEILGAIAIASARELIGSSPLRPRPILTERQRECVLWSARG 218 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ EIA+ LG+S TV +L A + R I A+ G I Sbjct: 219 KTAGEIADILGISEETVVRHLKMARERYSVHCRSMLILCALFDGLI 264 >gi|328754436|gb|EGF68052.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] Length = 218 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARNLT 175 L +G+++ ++ L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVQQGGTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|302205480|gb|ADL09822.1| Response regulator [Corynebacterium pseudotuberculosis C231] gi|308275716|gb|ADO25615.1| Response regulator [Corynebacterium pseudotuberculosis I19] Length = 234 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 48/125 (38%), Gaps = 16/125 (12%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK----------------RSSA 170 +G+++ + L V + +LF++ Sbjct: 103 GASGFLLKDTAPEELIEAVRSVGEQSAVISPAATAKLFRRIRSGQTDKKPDGLKHINEDL 162 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+L G ++ EIA +L +S+ TV ++G K + +R+ A+ A + Sbjct: 163 IEPLTPRELEILELIAMGKSNAEIAAELFISLPTVKTHVGRVLTKTGSRDRVHAVLFAFK 222 Query: 231 FGYIC 235 G + Sbjct: 223 RGVVT 227 >gi|224552909|gb|ACN54692.1| PagR [Pantoea agglomerans] Length = 210 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 10/204 (4%) Query: 37 TINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEET 96 I + ++ + N + + DI + D + + W E Sbjct: 9 IIYAYAIMNKKDPSQMRIINNNPEWFDIYLERKYQFIDPVIIQSLRCIEDFFW----ENN 64 Query: 97 VIESSG---QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153 VI S G F G FP+ + + S+ + + Sbjct: 65 VILSGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVS 124 Query: 154 Y--QVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + ++ L L+ + L+ RE L+ G G T E+A L ++ TV ++G Sbjct: 125 FLIKLHQKTLNLYSQHHQKKNAFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|297196049|ref|ZP_06913447.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197723312|gb|EDY67220.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 219 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK-RSSAARNLT 175 L GYV+ + L G A +I ++L+ ++ + + LT Sbjct: 99 LKAGACGYVLKSVADRDLLAACRAAMRGEPFLYPGAVTALIRNYLDRARQGHETPDQILT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G +S++IAE L +SV TV + + KL +R+ AIR G I Sbjct: 159 AREEEVLKLVAEGRSSKDIAEILFISVKTVQRHRANLLRKLGLRDRLDLTRYAIRAGLI 217 >gi|313792636|gb|EFS40722.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313803170|gb|EFS44366.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313829121|gb|EFS66835.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313839557|gb|EFS77271.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314963942|gb|EFT08042.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|315079093|gb|EFT51100.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315081562|gb|EFT53538.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315109751|gb|EFT81727.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327334500|gb|EGE76211.1| DNA-binding response regulator [Propionibacterium acnes HL097PA1] gi|327457479|gb|EGF04134.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] Length = 202 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + +GY++ + L N + +G + + + ++ L +RET L+ Sbjct: 95 MAAGADGYLLKSITAPSLINAIRAVCNGQS-AIDPNVAAVAMRK--GPSPLNDRETEILR 151 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L DG ++ +IA +L LS TV YL +A KLDA +R A+ +A G++ Sbjct: 152 LVADGSSTAQIASRLYLSKGTVRNYLSTAMSKLDADSRTAAVTRAREEGWL 202 >gi|52787183|ref|YP_093012.1| YvqC [Bacillus licheniformis ATCC 14580] gi|163119642|ref|YP_080588.2| two-component response regulator LiaR [Bacillus licheniformis ATCC 14580] gi|319647713|ref|ZP_08001931.1| YvqC protein [Bacillus sp. BT1B_CT2] gi|52349685|gb|AAU42319.1| YvqC [Bacillus licheniformis ATCC 14580] gi|145903152|gb|AAU24950.2| two-component response regulator LiaR [Bacillus licheniformis ATCC 14580] gi|317390054|gb|EFV70863.1| YvqC protein [Bacillus sp. BT1B_CT2] Length = 211 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 59/123 (47%), Gaps = 9/123 (7%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA 171 +PV + Y++ TS+ +A+ + + G +V++ ++ Sbjct: 90 VYPV-IEAGALSYLLKTSKASEIADAIRAASVGEPKLEAKVAGKVLSKLRHSAGEQP-LH 147 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++LT RE L+L +G T++ IAE+L +++ TV ++ + KL+ +R QA A R Sbjct: 148 QSLTARELEILKLVAEGKTNKGIAEELYITIKTVKTHVTNILSKLEVDDRTQAAIYAHRN 207 Query: 232 GYI 234 + Sbjct: 208 KLV 210 >gi|229110649|ref|ZP_04240214.1| Two-component protein Kinase [Bacillus cereus Rock1-15] gi|229128492|ref|ZP_04257471.1| Two-component protein Kinase [Bacillus cereus BDRD-Cer4] gi|228654995|gb|EEL10854.1| Two-component protein Kinase [Bacillus cereus BDRD-Cer4] gi|228672822|gb|EEL28101.1| Two-component protein Kinase [Bacillus cereus Rock1-15] Length = 592 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F + S A L Sbjct: 472 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDAQKETPQSKATAYEL 531 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 532 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEIGII 591 >gi|15603675|ref|NP_246749.1| NarP [Pasteurella multocida subsp. multocida str. Pm70] gi|12722232|gb|AAK03894.1| NarP [Pasteurella multocida subsp. multocida str. Pm70] Length = 209 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L +++ A G I D L + + +LT+RE L Sbjct: 98 DAGADGYLLKDTEPDALLSQIQRIAQGEVILSDSIKDALIERQMNADPIYSLTDREMDVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +L G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 158 RLIATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|329934840|ref|ZP_08284881.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329305662|gb|EGG49518.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 209 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ LA V G QV+ L + S+ LT RE L+ A Sbjct: 104 AGAAGFLVKDGPVEELAAAVRRVLAGE--QVVDPALAMA-ALSAGPNPLTPRECDVLRSA 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T +IA +L LS TV YL S K NR +A+ +A G++ Sbjct: 161 ADGATVADIAAELHLSESTVRNYLSSVIGKTGTRNRTEALREARHHGWL 209 >gi|326329878|ref|ZP_08196194.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325952315|gb|EGD44339.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 221 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-----------QVITDFLELFKKRSSAAR 172 L +G+++ ++ LA V A G +V + + Sbjct: 93 LAAGASGFLLKNADPDSLAEAVRAAADGHALLAPEVTMRVIGRVTSHNAPTAPRPPKELD 152 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G+G ++ EIA +L L+ TV ++ + KL +R+Q + R G Sbjct: 153 LLTAREREVLLLIGEGLSNNEIARRLYLTEATVKTHVSACLAKLQLRDRVQTVVFIHRHG 212 Query: 233 YI 234 + Sbjct: 213 LL 214 >gi|317129617|ref|YP_004095899.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315474565|gb|ADU31168.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 207 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 5/112 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFKKRSSAARNLTE 176 FPV + Y++ TS + + G QV + + LT Sbjct: 92 FPV-MEAGAFSYILKTSSANEIVEAIRKAHKGVPTFQGQVTQKMFHQMRSKPK-HEELTN 149 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 RE L L G G T+++IAE L + + TV ++ KL+ +R QA A Sbjct: 150 REREVLALIGQGKTNKDIAETLHIGIKTVKTHVSHILSKLEVEDRTQAAIYA 201 >gi|229822851|ref|ZP_04448921.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271] gi|229787664|gb|EEP23778.1| hypothetical protein GCWU000282_00140 [Catonella morbi ATCC 51271] Length = 211 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 9/115 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-------ELFKKRSSAARNLTERE 178 + Y++ TS +A + G ++VI + L + R LT RE Sbjct: 96 AGASSYLLKTSSAAEIAQAIRSTYQG--HKVIEPAVTEKIIEHRLDQARPKPHDELTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G GY+++ IAE+L +++ TV ++ + KL+ +R QA A+ Sbjct: 154 LDVLRLIGQGYSNQAIAEELVITLKTVKTHVSNIFTKLEVEDRTQAAIYAVHHHL 208 >gi|229494690|ref|ZP_04388448.1| transcriptional regulatory protein UhpA [Rhodococcus erythropolis SK121] gi|229318357|gb|EEN84220.1| transcriptional regulatory protein UhpA [Rhodococcus erythropolis SK121] Length = 204 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ T+ LA EV+ H V + + LT RE L+ Sbjct: 97 LSAGVRGFLPKTTPAATLA-EVVRSVHAGGRYVDPSLAA--EAIGAGDSPLTPREADVLE 153 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG + E+IA + LS T YL SA KL A NR +A A R G+I Sbjct: 154 YAADGASIEQIASRAHLSAGTTRNYLSSAVTKLGAANRHEAAVIARRQGWI 204 >gi|307153141|ref|YP_003888525.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306983369|gb|ADN15250.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 220 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 13/123 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC----------YQVITDFLELFKKRSSA---AR 172 +GY E +L + A GA + +T+ S + Sbjct: 98 AGASGYCQKGIEAELLILALRSVAAGASWWDSTGTSSLREALTNVPFNSSVELSEIDLPQ 157 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G+T++EIAE+L ++V TV ++ + KLD +R A AI+ G Sbjct: 158 PLTKRELEILALIATGHTNQEIAERLQITVGTVRVHVHTILQKLDVRDRTSAAVLAIQKG 217 Query: 233 YIC 235 + Sbjct: 218 LVS 220 >gi|30021317|ref|NP_832948.1| two-component protein kinase [Bacillus cereus ATCC 14579] gi|218232352|ref|YP_002367934.1| Two-component protein Kinase [Bacillus cereus B4264] gi|29896871|gb|AAP10149.1| Two-component protein Kinase [Bacillus cereus ATCC 14579] gi|218160309|gb|ACK60301.1| Two-component protein Kinase [Bacillus cereus B4264] Length = 595 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F + S A L Sbjct: 475 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDAQKETPQSKATAYEL 534 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 535 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVRNKEEAVQKALEIGII 594 >gi|309799510|ref|ZP_07693740.1| DNA-binding response regulator [Streptococcus infantis SK1302] gi|308116866|gb|EFO54312.1| DNA-binding response regulator [Streptococcus infantis SK1302] Length = 199 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L Sbjct: 95 AGVDAYVLKERSIAELMQTLHTVLEGRKEY----SPELMEVMMTHPNPLTEQEVAVLHGV 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA+KL LS TV Y+ + KL+A NR +A A G++ Sbjct: 151 AQGLSNQEIADKLYLSNGTVRNYMTNILSKLNASNRTEAAKTAEEEGWL 199 >gi|284041827|ref|YP_003392167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946048|gb|ADB48792.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 220 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-------KKRSSAARN 173 L +G+++ L + V + A G L+ F ++ R+ Sbjct: 95 LRAGASGFMLKDVRPAQLVDAVHVVAGGDALLAPSATRRLLDRFAGELPGDERPLPDLRD 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G ++ E+A L LS TV ++ S KL +R+QA+ A G Sbjct: 155 LTERELDVLRLVAQGLSNAELAAYLVLSEATVKTHVSSVLRKLGLRDRVQAVVLAYDVGL 214 >gi|228958760|ref|ZP_04120472.1| Response regulator receiver [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800899|gb|EEM47804.1| Response regulator receiver [Bacillus thuringiensis serovar pakistani str. T13001] Length = 537 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 10/119 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLE------LFKKRSSAAR-NLTE 176 +GYV+ + + LA + + G + + E LF+ RS LT+ Sbjct: 419 GADGYVLKSIDSRELAESIRLVYRGGAMITHDLFHRMWEENKETGLFESRSDGIEYGLTK 478 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L G + IA L LS TV Y + KL NR +A+ KA G + Sbjct: 479 RELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDIGLLS 537 >gi|325964863|ref|YP_004242769.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470950|gb|ADX74635.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 217 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + + V+ A G L + S+ +LT RE L+L Sbjct: 104 AGASGYMLKDAPPEQIRQAVLAAAAGETVLAPRAAALLMNRISNPGTSLTPREVQLLELL 163 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ IA+++ +S TV +L KL NR AIA A + I Sbjct: 164 ATGLSNRAIAKQVFISEATVKTHLVHIYGKLGVDNRTAAIAAATQRRII 212 >gi|50842410|ref|YP_055637.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|50840012|gb|AAT82679.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|315105495|gb|EFT77471.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] Length = 218 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARNLT 175 L +G+++ +E L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNAEAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGSTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|298247821|ref|ZP_06971626.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550480|gb|EFH84346.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 201 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G+++ + LA V G +V+ L L S + LTERE + L A Sbjct: 97 GVVGFLLKDAPSAQLATAVRRAMAGE--RVVDPTLAL-SALSEGSNPLTERERTVLAAAT 153 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G + +IA KL LS TV YL A KL NRI+A KA + G++ Sbjct: 154 EGASIAQIAAKLFLSEGTVRNYLSVAIQKLGVRNRIEAARKAEQKGWL 201 >gi|294626735|ref|ZP_06705330.1| two-component system response regulator, LuxR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294667185|ref|ZP_06732408.1| two-component system response regulator, LuxR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598983|gb|EFF43125.1| two-component system response regulator, LuxR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603084|gb|EFF46512.1| two-component system response regulator, LuxR family [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 205 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + + G +VI L + A L+ERE + L+ Sbjct: 99 LDAGVAGYLLKDAPAEQLVDALRQVHRGG--RVIDPQLAI--DAWVEADPLSERERTVLR 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG+G ++ EIA++L LS TV YL KL NRI+A A + G++ Sbjct: 155 LAGEGRSASEIAQQLQLSHGTVRNYLSECIGKLGVANRIEAYRLARQKGWL 205 >gi|315501090|ref|YP_004079977.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315407709|gb|ADU05826.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 220 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L +G+++ +E L + V + A G ++I +F + R L Sbjct: 93 LRAGASGFLVKDTEPAELIHGVRVVARGDALIAPAVTRRLIAEFAARTRHPEPGPRLNAL 152 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE L L G +++EIA +L LS T ++ K +R Q + A G Sbjct: 153 TEREREVLALVAAGLSNDEIAARLVLSPATAKTHVSRIMTKTRVRDRAQLVVLAYESGL 211 >gi|218437173|ref|YP_002375502.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218169901|gb|ACK68634.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 234 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 27/74 (36%), Positives = 44/74 (59%) Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +E +S +LT+RE LQL DGY++ IA++L ++V TV ++ + KL A + Sbjct: 160 VEAENNQSVENYSLTDRELEVLQLIVDGYSNAAIADQLFITVGTVKTHVRNILNKLCADD 219 Query: 221 RIQAIAKAIRFGYI 234 R QA +A+R G + Sbjct: 220 RTQAAVRALRAGLV 233 >gi|154685393|ref|YP_001420554.1| YhcZ [Bacillus amyloliquefaciens FZB42] gi|154351244|gb|ABS73323.1| YhcZ [Bacillus amyloliquefaciens FZB42] Length = 214 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 8/115 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L Y + ++ L + G V+T ++ + LT Sbjct: 93 LKAGAKAYQLKDAQPDDLVKTLREVYSGRYRLSADIVPHVLTHMVQ-DDQDKEKYDQLTP 151 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE LQ G +++EIA L +S TV ++ + KL+ +R QA A+++ Sbjct: 152 REKDVLQEIAKGKSNKEIAAALFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKY 206 >gi|271968550|ref|YP_003342746.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270511725|gb|ACZ90003.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 201 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 34/110 (30%), Positives = 47/110 (42%), Gaps = 3/110 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 H G++ LA+ V A G D +A LT RE L+L Sbjct: 95 AVHALGFMSLDVGPEQLADGVRRVAAGGR---AVDSELAVAALEAAENPLTRRELDVLRL 151 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G S EIA++L LSV TV ++ K A NR+ A+ A G++ Sbjct: 152 AAQGARSNEIADQLFLSVGTVRNHMSRIMCKTHARNRLDAVRIASDSGWL 201 >gi|256391849|ref|YP_003113413.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256358075|gb|ACU71572.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 10/119 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNL-- 174 L +G+++ + L + A G VI +E + R L Sbjct: 96 LAAGASGFLLKRTRPEHLIAAIHTIAGGEALLSPAVTRTVIDRMIEQPARDPRTMRRLSA 155 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T RE L+L G ++ EIA+ L +S TV ++ KLD +R+QA+ A G Sbjct: 156 LTPRERDVLELVARGLSNPEIAQTLVVSESTVKTHMKRILDKLDLRDRVQAVILAYEAG 214 >gi|226364631|ref|YP_002782413.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226243120|dbj|BAH53468.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 222 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 11/119 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRS----SAARNL 174 +GY++ ++ L + V A G V+ ++ + + A L Sbjct: 103 AGASGYLVKSASVEELLDAVRATAAGQAVFTPGLAGLVLGEYRRMSSAPADEQGPAVPKL 162 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERET L+ G ++++IA KL LS TV ++ + KL NR++ AI G Sbjct: 163 TERETEVLRFVAKGLSAKQIATKLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221 >gi|56798118|dbj|BAD82901.1| transcription factor [Pseudomonas sp. MT-1] Length = 218 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 8/112 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAAR--NLT 175 L +GY++ + L ++ + A G QV+ + + + K + +LT Sbjct: 99 LRNGADGYLLKDMDAEQLVEQIRLAATGRMALSPELTQVLAEAIRVRPKPTGQVPFSSLT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +RE L+L G +++ IA KLG++ TV ++ + KL +R++A Sbjct: 159 KREKEVLRLIAKGQSNKMIARKLGITEGTVKVHVKNLLHKLGLRSRVEAAVW 210 >gi|72161171|ref|YP_288828.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71914903|gb|AAZ54805.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 221 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL--ELFKKRSSAARNL 174 L +G+++ +E L N V + A G +VI ++ R+L Sbjct: 96 LRLGASGFLVKDTEPEDLINGVRVVARGEALLSPSVTRRVIAEYAGRPRRPAPDRRLRDL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE + L G+G ++EEIA +L LS TV ++ A KL +R Q + A G + Sbjct: 156 TDREREVVALVGEGLSNEEIAARLVLSPATVKTHVSRAMAKLRVRDRAQLVVVAYETGLV 215 Query: 235 C 235 Sbjct: 216 A 216 >gi|311896158|dbj|BAJ28566.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 202 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + +G+++ + LA + + G + D S LT RE L+ Sbjct: 94 MAAKVSGFILKDAPPADLARAIRKVSAGES---VIDPQLAVAAWESGDCPLTGREIEVLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA +G EIA +L LS TV YL + KL+A NR+ AI A G++ Sbjct: 151 LAAEGAEVAEIASRLFLSSGTVRNYLTTVVSKLNARNRVDAIRVAKAAGWL 201 >gi|322437503|ref|YP_004219593.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321165396|gb|ADW71099.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 207 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 2/108 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 Y+ + L N + G Y L ++ + A +LT RE+ L Sbjct: 99 GAMAYLTKDASGEELLNAIQSVHRGLRYLPHVALDRLAER--TPAVDLTPRESEVLVCIT 156 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++LG++ TV ++ S K+ A +R QA A++ G + Sbjct: 157 QGRSNQEIADELGIAEKTVRIHVSSLLDKMGARDRTQATIYALQRGLV 204 >gi|282853975|ref|ZP_06263312.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282583428|gb|EFB88808.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314923372|gb|EFS87203.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314966719|gb|EFT10818.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981049|gb|EFT25143.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315093364|gb|EFT65340.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|327327545|gb|EGE69321.1| nitrate/nitrite response regulator protein NarL [Propionibacterium acnes HL103PA1] Length = 210 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S +LT RE L+ + Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMVRMRSPRTSLTAREFDVLEAS 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IAE L +S TV +L KL +R A+AKA G+I Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGFI 209 >gi|291303040|ref|YP_003514318.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572260|gb|ADD45225.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 215 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L G+++ S+ L V A GA Y +VI +F R + A+ Sbjct: 94 LDAGAAGFLLKASDPRELIIGVRAVADGAAYLSPRVAGRVIAEFDTDRLTRGTGAQRKVA 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G +++EI +L L+ TV A++ + +L NR++A + G Sbjct: 154 ELTPRENEVLGLIASGLSNQEIGRRLHLTEGTVKAHVSAILQRLGVRNRVEAAIIGYQAG 213 Query: 233 Y 233 Sbjct: 214 L 214 >gi|295095488|emb|CBK84578.1| transcriptional activator SdiA [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 173 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 62/173 (35%), Gaps = 7/173 (4%) Query: 69 IETYGDDFLFHFNSGLLP--IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGF 126 + Y + F + L P I + + + Q GI + + Sbjct: 1 MAQYQSENYFAIDPVLKPENFIQGHLPWTDELFTDAQQLWDGARDHGLRKGITQCLMMPN 60 Query: 127 HKNGYVIFTSEFLML----ANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSC 181 H G++ + L + EV + +T L + ++RE Sbjct: 61 HALGFLSVSCTSLQAHSISSEEVELRLQMLVQMALTTLLRFEHETVMPPEMKFSKREREI 120 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EIA L +S +TVN + + K +A N+IQ A G I Sbjct: 121 LKWTAEGKTSAEIAIILSISENTVNFHQKNMQKKFNAPNKIQIACYAAATGLI 173 >gi|320333847|ref|YP_004170558.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755136|gb|ADV66893.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 215 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSA-----ARNL 174 GY++ L + A G A Q + LE F+ + A L Sbjct: 96 AGARGYLLKDVALPQLLQAIRTVAGGGRWLQPAVTQRVLRGLEAFRPAAEPFTPCDAVTL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L GY++ EIA L + TV +Y+ + KL +R +A+ KA+ G + Sbjct: 156 TDRECDVLRLLAGGYSNREIAGALRTTEGTVKSYVSNVLSKLGVRDRTRAVLKALELGVL 215 >gi|294635449|ref|ZP_06713937.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda ATCC 23685] gi|291091182|gb|EFE23743.1| nitrate/nitrite response regulator protein NarL [Edwardsiella tarda ATCC 23685] Length = 202 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE L ++ E H + + ++L + + +LTERE L Sbjct: 91 DAGADGYLLKDSEPETLLAQIHQAAEGHNVFSEAVLNYLGTRSEIADPLADLTERELDVL 150 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 151 QEVARGMSNKQIAAQLHISEETVKVHIRNLLRKLNVRSRVAATV 194 >gi|256014910|ref|YP_003104919.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915] gi|255997570|gb|ACU49257.1| transcriptional regulator, LuxR family [Brucella microti CCM 4915] Length = 259 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 23/191 (12%) Query: 63 DIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAG----- 117 +P + Y F + P+ + S+ ++ + + P Sbjct: 64 TLPATWVARYSSKNYFAID----PVFQEDAPYYRNDTSAIARDLKEDADICPAVAELLHD 119 Query: 118 ----------IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--- 164 IA G +FT E + + + Sbjct: 120 AEKHGLGNLFIAVSACNPKGVAGCTVFTFEVEDEDRTQFLARMRPRLLSLAGIIHGTVCG 179 Query: 165 -KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 K +S A LT RE CL+ A +G T EIAE L ++ TV YL +A +KL+ NR Sbjct: 180 CKDANSVASLLTPREVDCLRWAANGKTDGEIAEILSIARWTVVTYLQNAKIKLNCSNRTS 239 Query: 224 AIAKAIRFGYI 234 A+A A+ G I Sbjct: 240 AVATALSLGII 250 >gi|13471370|ref|NP_102936.1| nitrate/nitrite regulatory protein [Mesorhizobium loti MAFF303099] gi|14022112|dbj|BAB48722.1| nitrate/nitrite regulatory protein [Mesorhizobium loti MAFF303099] Length = 206 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 6/111 (5%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 VRLG GY + ++ + ++ AHG ++ ++++ K + LT RE Sbjct: 93 VRLGAQ--GYCFQFDDPAIIFDTILAVAHG---RICIPYIDINKVNDTPLAQLTVREREL 147 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA-KAIRF 231 L + DG+T+ +IA + G+S +TV +L + KLD NR A+A A Sbjct: 148 LAVLSDGWTNLQIATRTGISENTVKYHLKNLYDKLDVRNRAMAVALYARER 198 >gi|306828869|ref|ZP_07462061.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] gi|304429047|gb|EFM32135.1| DNA-binding response regulator [Streptococcus mitis ATCC 6249] Length = 199 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEVVMTHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS TV Y+ + KL+A NR +A A G++ Sbjct: 151 AQGLSNQEIADQLYLSNGTVRNYVTNILSKLNAGNRTEAANIATESGWL 199 >gi|148656116|ref|YP_001276321.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148568226|gb|ABQ90371.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 220 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 5/115 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRS--SAARNLTERETS 180 Y++ ++ L + + G V + F++ S A LTERE Sbjct: 99 AGARAYLLKDADADELIDVIERVYRGEAALDPTVTLKVFDEFRRLSVDQDAEQLTERERD 158 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L GY + IA++L LS TV L KL NR QA A++ G I Sbjct: 159 ILTLLAAGYDNRTIAQRLFLSEKTVGNRLSEIFQKLGVSNRTQAALVAVQRGLIA 213 >gi|239945707|ref|ZP_04697644.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239992177|ref|ZP_04712841.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291449166|ref|ZP_06588556.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291352113|gb|EFE79017.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 232 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSS-AARNLT 175 L GYV+ + L GA +I +FL+ K AR +T Sbjct: 112 LKAGAAGYVLKSVADRDLVEACRAAMRDEPFLYPGAVTALIRNFLDRAKDGEDLPARAIT 171 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L +G++S+EIAE L +SV TV + + KL +R++ AIR G I Sbjct: 172 EREEEILKLVAEGHSSKEIAELLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 230 >gi|257057857|ref|YP_003135689.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587729|gb|ACU98862.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 218 Score = 98.9 bits (245), Expect = 5e-19, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK-----RSSAARNLT 175 L +G+++ + +L V A G QV L F + RS+ A+ LT Sbjct: 96 LQGGASGFLLKDAGPTLLIEAVRAAARGDALVSPQVTVRLLRHFGRKQRPDRSTRAKELT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE ++ A G T+ EI +L LS+ TV +L S KL NR++ A A R G Sbjct: 156 GRELDVVRAAARGLTNSEIGAELYLSLSTVKTHLASVQQKLGVRNRVEIAAWAWRNGI 213 >gi|328952588|ref|YP_004369922.1| two component transcriptional regulator, LuxR family [Desulfobacca acetoxidans DSM 11109] gi|328452912|gb|AEB08741.1| two component transcriptional regulator, LuxR family [Desulfobacca acetoxidans DSM 11109] Length = 222 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS--AARNL 174 L +GY++ L + + Y Q+ L +++ S L Sbjct: 96 LSVGADGYLLKEDADTELFSAIDTIRQQGTYISPLLSPQLKDLLLRKYREDRSQFPEDPL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L+L +G +S+EI L +S TV + + KL + + AI+ GY Sbjct: 156 TKREKEILRLIAEGKSSKEIGAVLFISSRTVEHHRANMMRKLGCRKIAELVRYAIQKGY 214 >gi|312200594|ref|YP_004020655.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231930|gb|ADP84785.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 214 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA-----RNLT 175 L +G+V+ SE L + + A G V +E F +R LT Sbjct: 96 LRGGASGFVLKDSEPADLLRAIRVVAAGESLLSPAVTRRVIEAFARRPVGPGAPDLDGLT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE + L G G +++EIA +L +S T ++ VKL A +R Q A + G + Sbjct: 156 DREREVMGLVGHGLSNDEIAARLVISPATARTHVSRVMVKLGARDRAQLAVLANQAGLV 214 >gi|302540802|ref|ZP_07293144.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces hygroscopicus ATCC 53653] gi|302458420|gb|EFL21513.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces himastatinicus ATCC 53653] Length = 221 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA--RNLTER 177 +G+++ +E L V G ++I +F K+ + A+ LTER Sbjct: 99 GASGFLVKDTEPEELLRAVRAVVDGDALLSPGVTRRLIAEFAARSKEPAPASVLAELTER 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L G G ++EEIA +L +S T ++ VKL A +R Q + A G + Sbjct: 159 EREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|171915706|ref|ZP_02931176.1| DNA-binding response regulator [Verrucomicrobium spinosum DSM 4136] Length = 220 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 54/114 (47%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN--LTERETS 180 GY++ T+ + + + G ++ LE+F K + + L+ RE Sbjct: 107 AGAAGYLLKTAGADAIVSAIREALAGGSPMNPRIARRVLEMFSKLAPKTHDYGLSAREKE 166 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G +EIA++L LSVHTV+ YL KL+ R A+AKA++ I Sbjct: 167 ILDLMVKGLIKKEIADRLTLSVHTVDTYLRRIYEKLEVNTRTGAVAKALKERLI 220 >gi|238754417|ref|ZP_04615773.1| Transcriptional activator protein esaR [Yersinia ruckeri ATCC 29473] gi|10444019|gb|AAG17669.1|AF274748_1 response regulator YruR [Yersinia ruckeri] gi|238707450|gb|EEP99811.1| Transcriptional activator protein esaR [Yersinia ruckeri ATCC 29473] Length = 247 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 60/195 (30%), Gaps = 24/195 (12%) Query: 63 DIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 P+ + Y H + +L P W + + L Sbjct: 49 SYPDEWADIYTSQNYQHIDPIVLTAFKRISPFAWDE-NITILSDLKSSKIFALSKKYNIV 107 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLM---LANEVIIE---AHGACYQVITDFLELFKKR-- 167 G F + + + + L + + + ++ L L + + Sbjct: 108 NGFTFVLHDHMNNLAMLSLIMDNNADKGLNSRIESDKDRLQMNLIKIHEKMLMLEQNKLG 167 Query: 168 --------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +S L+ RE L A G T EIA G++ TV ++G+ KL + Sbjct: 168 VSNGKNTDTSGKGILSPRENEVLHWASMGKTYPEIALIAGITTRTVKHHMGNVVKKLGVI 227 Query: 220 NRIQAIAKAIRFGYI 234 N QAI + I Sbjct: 228 NARQAIRLGVELELI 242 >gi|9297069|sp|O87971|YUKR_YERRU RecName: Full=Transcriptional activator protein yukR gi|3388087|gb|AAC28702.1| response regulator YukR [Yersinia ruckeri] Length = 229 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 60/195 (30%), Gaps = 24/195 (12%) Query: 63 DIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 P+ + Y H + +L P W + + L Sbjct: 31 SYPDEWADIYTSQNYQHIDPIVLTAFKRISPFAWDE-NITILSDLKSSKIFALSKKYNIV 89 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLM---LANEVIIE---AHGACYQVITDFLELFKKR-- 167 G F + + + + L + + + ++ L L + + Sbjct: 90 NGFTFVLHDHMNNLAMLSLIMDNNADKGLNSRIESDKDRLQMNLIKIHEKMLMLEQNKLG 149 Query: 168 --------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +S L+ RE L A G T EIA G++ TV ++G+ KL + Sbjct: 150 VSNGKNTDTSGKGILSPRENEVLHWASMGKTYPEIALIAGITTRTVKHHMGNVVKKLGVI 209 Query: 220 NRIQAIAKAIRFGYI 234 N QAI + I Sbjct: 210 NARQAIRLGVELELI 224 >gi|168698046|ref|ZP_02730323.1| response regulator receiver [Gemmata obscuriglobus UQM 2246] Length = 232 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLE-LFKKRSSAARNLTERET 179 L GYV+ S L + A G Y ++ E +A L++RE Sbjct: 96 LQAGARGYVLKRSAAEELVQALRAVAAGGVYLEPRLAAQLAEGPAAAPPDSAEALSQREH 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY ++EI +L +SV TV Y KL+ +R++ + A G++ Sbjct: 156 EVLRLLALGYANKEIGARLRISVKTVETYKTRGMEKLNLRSRVELVRYAFERGWL 210 >gi|187251602|ref|YP_001876084.1| two component LuxR family transcriptional regulator [Elusimicrobium minutum Pei191] gi|186971762|gb|ACC98747.1| Two-component transcriptional regulator, LuxR family [Elusimicrobium minutum Pei191] Length = 225 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 7/117 (5%) Query: 126 FHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 NGY+ L N + ++ +++ ++ + + LT E Sbjct: 102 AGANGYLSKMLPASELLNSIKTFTSEGLMIPQQLMGKLLHGLRKMGDNGTPSQALLTRTE 161 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + L G G +++E+A +L SV T+ +L SA KL +R +A+ KAI G I Sbjct: 162 IKVISLLGKGLSNKELATELSCSVKTIKNHLNSAFHKLGVGSRTEAVVKAIEKGLIS 218 >gi|256420776|ref|YP_003121429.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256035684|gb|ACU59228.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 211 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L GY++ S+ + + + G Y Q+I D KK LT Sbjct: 95 LKLGCMGYLLKESDDVTILQAIETVQKGGQYLSPALNQQLIEDMFR-NKKSEKKNTALTR 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQL D +T++EIA+KL LS+HTV + S KL+ N + A++ G + Sbjct: 154 REKEVLQLIIDEHTNQEIADKLFLSLHTVENHRISLLHKLEVKNTAGLVKVALQTGLV 211 >gi|226309444|ref|YP_002769406.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226188563|dbj|BAH36667.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 204 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ T+ LA EV+ H V + + LT RE L+ Sbjct: 97 LSAGVRGFLPKTTPAATLA-EVVRSVHAGGRYVDPSLAA--EAIGAGDSPLTPREADVLE 153 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG + E+IA + LS T YL SA KL A NR +A A R G+I Sbjct: 154 YAADGASIEQIASRAHLSAGTTRNYLSSAVTKLGAANRHEAAVIARRQGWI 204 >gi|171913285|ref|ZP_02928755.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 207 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY+ T+ L + A G Y + LE ++ RE L+ Sbjct: 97 LDAGAAGYLQKTASRDELLTALRRVAAGGSY--LPPELEQRLADLRLCVGISMREREILE 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G+ +++IA +S TV ++ KL +R QA A+AIR G + Sbjct: 155 LIAKGHANKQIAALFAISEDTVKRHVSHILEKLGVHDRAQATAEAIRRGIV 205 >gi|302540851|ref|ZP_07293193.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458469|gb|EFL21562.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 228 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR-------N 173 L +G+++ L V G + ++ F +R S + Sbjct: 93 LSAGASGFLLKDVTPEQLTAAVRTVRTGDALLAPAITRRLVQRFTQRGSDTATLHRDLAS 152 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ E+A +L L+ TV ++ KL +R+QA+ A G Sbjct: 153 LTPRELEVLGLLARGLSNAELATRLYLAEATVKTHVARILAKLGLRDRVQAVIAAYETGL 212 Query: 234 IC 235 + Sbjct: 213 VS 214 >gi|29832167|ref|NP_826801.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609285|dbj|BAC73336.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 239 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L +G+++ + V + A G ++I DF+ ++ A R LTE Sbjct: 96 LRAGASGFLVKDMGLDDILAAVRVVAAGDALIAPGVTRRLIQDFVA-SPEQPRARRELTE 154 Query: 177 ---RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L G G T+ EIAE+L +SV T YL KLDA +R+Q + A G Sbjct: 155 ITEREREVLTLVGTGLTNTEIAERLFISVATAKTYLTRLLAKLDARDRVQLVIIAYEAGL 214 Query: 234 IC 235 + Sbjct: 215 VA 216 >gi|121604753|ref|YP_982082.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120593722|gb|ABM37161.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 262 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 12/119 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA---------RNL 174 GY++ S F V+ +G + L F++ + L Sbjct: 143 GATGYLVKNSWFGNFPQAVLQVVNGGASITPNLARRLLNKFEQPQNNVQTLQENKNKEKL 202 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +ERE L+L GYTS EI +L +S TVN ++ + KL+ R QA++ A G Sbjct: 203 SEREKQVLKLVASGYTSTEIGSRLIISGQTVNTHIKNIYRKLNVRTRAQAVSFAASRGL 261 >gi|312199045|ref|YP_004019106.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311230381|gb|ADP83236.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 222 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 1/111 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L V A G + L + R+ L++RE LQL Sbjct: 107 AGATGYLLKDAARDDLLRAVRAAARGEAVLAPSVAATLMNRVRTPETGPLSQRELEVLQL 166 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G T+ +A +L ++ TV +L + KL +R A+A+A G + Sbjct: 167 VAAGATNRVVAAQLFVTEATVKTHLLNIYAKLGVNDRAAAVAEAFGRGLLT 217 >gi|226365558|ref|YP_002783341.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244048|dbj|BAH54396.1| NarL family two-component response regulator [Rhodococcus opacus B4] Length = 208 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 41/107 (38%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ S + V A G L ++ LT RE L L Sbjct: 98 DAGAIGYLLKDSTPQEIFAAVRGAAAGQSVLSPPVASRLLQQMQRPEEALTPREAELLTL 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 G T++E+ + L +S TV +L KL R A++ A+R Sbjct: 158 LAKGMTNKELGKALFISEATVKTHLAHIYSKLGVDTRAAAVSVALRR 204 >gi|315091877|gb|EFT63853.1| putative nitrate/nitrite response regulator protein NarL [Propionibacterium acnes HL110PA4] Length = 210 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S +LT RE L+ + Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVAPRLMVRMRSPRTSLTAREFDVLEAS 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IAE L +S TV +L KL +R A+AKA G+I Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTHLSHIYTKLGVTSRSAAVAKARDIGFI 209 >gi|154251588|ref|YP_001412412.1| two component LuxR family transcriptional regulator [Parvibaculum lavamentivorans DS-1] gi|154155538|gb|ABS62755.1| two component transcriptional regulator, LuxR family [Parvibaculum lavamentivorans DS-1] Length = 213 Score = 98.9 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA---RNLTERET 179 +GYV+ ++ L V G Y +V L + + + LT RE Sbjct: 98 AGASGYVLKSASKEDLLRAVRAVHAGGGYLQAEVTKPLLRRLAQDARTSGQKATLTSREL 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ DG +++ IA+ L ++ TV A+L S KL A +R A+A ++R I Sbjct: 158 QVLECLADGQSNKMIAQTLSITEDTVKAHLKSLYEKLGASDRAHAVAISLRQQLI 212 >gi|239918332|ref|YP_002957890.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239839539|gb|ACS31336.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 209 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 48/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + +A+ V A G L + S + L+ERE L+L Sbjct: 100 AGAAGYLLKDAPSEEIASAVRQAAAGRKALAPQVAATLMGRMSGGSEVLSEREIELLELI 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++ A++L +S TV +L KL NR +A+ +A R I Sbjct: 160 ARGATNKVAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 208 >gi|29832581|ref|NP_827215.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609701|dbj|BAC73750.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 227 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 15/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFL--------ELFKKRS 168 L +G++ +E L N + + A G +I FL E R+ Sbjct: 97 LRAGASGFLGKGAEPEELLNAIRVAAGGEALLSPAATKGLIAKFLAQGDGLDDERDPARA 156 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G++++EIAE+L +S TV ++ A KL A +R Q + A Sbjct: 157 ERLDALTGREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIA 216 Query: 229 IRFGYI 234 G + Sbjct: 217 YESGLV 222 >gi|300741965|ref|ZP_07071986.1| two-component system response regulator TcsR2 [Rothia dentocariosa M567] gi|300381150|gb|EFJ77712.1| two-component system response regulator TcsR2 [Rothia dentocariosa M567] Length = 210 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G+++ + LA + H + V + + LTERET L+ Sbjct: 103 LAAGASGFMVKDTSASQLAEGIRRV-HAGMHVVDPALAA--ESLAYGESPLTERETEILR 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +AG G T+ I E+L LS TV +L SA KL+A NR +AI A G++ Sbjct: 160 VAGHGATARAIGEQLFLSPGTVRNHLSSAMAKLNASNRQEAIRIAADNGWL 210 >gi|281415470|ref|ZP_06247212.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 202 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 48/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + +A+ V A G L + S + L+ERE L+L Sbjct: 93 AGAAGYLLKDAPSEEIASAVRQAAAGRKALAPQVAATLMGRMSGGSEVLSEREIELLELI 152 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++ A++L +S TV +L KL NR +A+ +A R I Sbjct: 153 ARGATNKVAAKELFISEATVKTHLVHIFQKLGVDNRTRAVDEARRRRII 201 >gi|269795459|ref|YP_003314914.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269097644|gb|ACZ22080.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 222 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G+++ ++ ++ + V A G +++ +F++ R AA Sbjct: 96 LEAGASGFLLKDADPDVIVHAVRQVAAGHGTIDQTLTRRILREFVDRRSLRPVAAHRADG 155 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L G +++EIA +L + V TV ++L KL +R+QA+ A + Sbjct: 156 LLTEREREILLLLAQGMSNDEIARELVVEVSTVKSHLARMLPKLGVRSRLQAVVWAYQNR 215 Query: 233 YIC 235 + Sbjct: 216 VVA 218 >gi|311113859|ref|YP_003985081.1| DegU family transcriptional regulator [Rothia dentocariosa ATCC 17931] gi|310945353|gb|ADP41647.1| transcriptional regulatory protein DegU [Rothia dentocariosa ATCC 17931] Length = 241 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 27/137 (19%) Query: 126 FHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAA------- 171 +G+++ + L + + A A +++ + + + S Sbjct: 105 AGASGFLLKDAPPEELLGAIRTIHRGDAVIAPSATRRLLEHMIPVLEVHSEQDSASVAPT 164 Query: 172 -------------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + L+ RE L+L G ++ EI+ L LS T+ ++ KLDA Sbjct: 165 PQEEPQLLHQELMQTLSPREHEVLRLIAQGLSNVEISRALVLSEATIKTHVSHVLSKLDA 224 Query: 219 VNRIQAIAKAIRFGYIC 235 +R+QA+ A G + Sbjct: 225 RDRVQAVIMAYEAGIVS 241 >gi|284992446|ref|YP_003411000.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284065691|gb|ADB76629.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 217 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLEL----FKKRSSAAR 172 L GY++ L V A G +V+ F +L + Sbjct: 96 LRAGALGYLLKDVSADRLVEAVQAAARGESVLQPSVAAKVVARFAQLDDAPRSRPQPLVV 155 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L+L DG ++ EIA L L+ TV ++ + KL A +R QA +A Sbjct: 156 PLSDRELDVLRLLADGRSNREIATALFLAEGTVKNHVTNVLGKLGARDRTQAALRARALD 215 Query: 233 YI 234 + Sbjct: 216 LL 217 >gi|291483400|dbj|BAI84475.1| hypothetical protein BSNT_01607 [Bacillus subtilis subsp. natto BEST195] Length = 215 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 9/118 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ----VITDFLELFKKRSSAAR----NLT 175 L Y + +E L + + HG Y+ ++ L K + + LT Sbjct: 93 LQAGAKAYQLKDTEPEELVKTLR-QVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L +G +++EIA L +S TV ++ + KL+ +R QA A+++ Sbjct: 152 RREKDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNL 209 >gi|320010051|gb|ADW04901.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 224 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELF-----KKRSSAA 171 L +G+++ L + + + A +++ F + + + Sbjct: 95 LKAGASGFMLKDVPPGELLSAIRSVHSGDAVVAPSTTRRLLDRFSPMLPSGRKEPQDKHV 154 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 EKLTGREREVMMLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|188534209|ref|YP_001908006.1| Regulatory protein [Erwinia tasmaniensis Et1/99] gi|188029251|emb|CAO97128.1| Regulatory protein [Erwinia tasmaniensis Et1/99] Length = 240 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 17/192 (8%) Query: 55 HNYDLDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVR 107 + P +E Y D L + +W SSGQ Sbjct: 54 RPKTFLYSNYPQNWLEHYWREDFYQLDPVLKICSVPGKVWLWDDED-----LSSGQRVFD 108 Query: 108 LEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLM----LANEVIIEAHGACYQVITDFLEL 163 + GI+ V G + ++ + L E+ ++ + +++ Sbjct: 109 DARIHGIYHGISCSVMASNRSVGILSMSTANALKNIVLTPEIELKIQYISELTMAALIDI 168 Query: 164 FK-KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 ++ +L+ERE L+ +G TS EI+ L +S +TVN + + +A N+ Sbjct: 169 NDISMATTKLDLSERELEVLKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKT 228 Query: 223 QAIAKAIRFGYI 234 Q + A G I Sbjct: 229 QIASYAAAIGLI 240 >gi|317492747|ref|ZP_07951172.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919270|gb|EFV40604.1| response regulator receiver domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 210 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE +L +++ A G I+++L + + +LTERE L Sbjct: 99 DAGADGYLLKDSEPEILLSQIHQAASGKNVFSDTISEYLSSRTELTDPFADLTERELDVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G ++++IA +L +S TV ++ + KLD +R+ A Sbjct: 159 QEVARGLSNKQIASQLHISEETVKVHIRNLLRKLDVRSRVAATV 202 >gi|294630526|ref|ZP_06709086.1| response regulator, two-component system [Streptomyces sp. e14] gi|292833859|gb|EFF92208.1| response regulator, two-component system [Streptomyces sp. e14] Length = 224 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G+++ + LA+ V + A G ++IT+F +L A Sbjct: 98 LRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTRRLITEFAKLSGPARPPAAAQAA 157 Query: 173 --NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LTERET L L G ++ EI+E+L ++ TV ++ VKL +R QA A Sbjct: 158 YGDLTERETEVLVLIAQGLSNGEISERLVVAESTVKTHVSRVLVKLGLRDRTQAAVFAYE 217 Query: 231 FGYIC 235 + Sbjct: 218 ARLVT 222 >gi|290955190|ref|YP_003486372.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260644716|emb|CBG67801.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFK-KRSSAARNLT 175 L +GYV+ + L GA ++ ++L+ + + +T Sbjct: 101 LKAGASGYVLKSVADRDLVAACRAAMRDEPFLYPGAVTALVRNYLDRVRHGEEPPDQVVT 160 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G++S+EIAE L +S+ TV+ + + KL +R++ AIR G I Sbjct: 161 PREEEVLKLVAEGHSSKEIAEMLFISIKTVHRHRANLLHKLGLRDRLELTRYAIRAGLI 219 >gi|302559284|ref|ZP_07311626.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302476902|gb|EFL39995.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 223 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 44/123 (35%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS------------AA 171 L +G+++ L + G + L + + Sbjct: 95 LKAGASGFMLKDVPPGELLAAIRAVHSGDAVVAPSTTRRLLDRFAPMLPGTGKQDGHQEL 154 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + L G ++ EIA +L LS TV ++G KL +R+Q + A Sbjct: 155 ERLTGREREVMVLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLGLRDRVQVVVLAYET 214 Query: 232 GYI 234 G + Sbjct: 215 GLV 217 >gi|221065714|ref|ZP_03541819.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220710737|gb|EED66105.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 254 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 12/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR-----NL 174 GY++ S F + V+ A+G +++ + + L Sbjct: 135 GVLGYLLKNSWFGSYSQAVLEVANGGASISPIVAKKILPKIFQTSITEENPLEYKNYEPL 194 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+L G + EI L +S TV+ ++ + K+ R QA+ A+ G I Sbjct: 195 TEREKEVLRLIAQGKRTHEIGSYLKISTLTVSTHVKNIYRKMQVRTRAQAVRYAVLKGII 254 >gi|256789340|ref|ZP_05527771.1| two component system response regulator [Streptomyces lividans TK24] gi|289773226|ref|ZP_06532604.1| two component system response regulator [Streptomyces lividans TK24] gi|289703425|gb|EFD70854.1| two component system response regulator [Streptomyces lividans TK24] Length = 221 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NLTER 177 +G+++ +E L V G ++I +F K+ ++ LTER Sbjct: 99 GASGFLVKDTEPEELLRAVRAVVDGDALLSPGVTRRLIAEFAARSKEPAAPGEMARLTER 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L G G ++EEIA +L +S T ++ VKL A +R Q + A G + Sbjct: 159 EREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|224552969|gb|ACN54732.1| PagR [Pantoea agglomerans] gi|224552972|gb|ACN54734.1| PagR [Pantoea agglomerans] Length = 210 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 61/185 (32%), Gaps = 10/185 (5%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG---QLSVRLEGGL 112 N + + DI + D + + W E VI S G Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFW----ENNVILSGGYNLTRIFNESFQY 83 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSA 170 F G FP+ + + S+ + + + ++ L L+ + + Sbjct: 84 NIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLIKLHQKTLNLYSQHNQK 143 Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ G G T E+A L ++ TV ++G+ KL N A+ Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGT 203 Query: 230 RFGYI 234 + Sbjct: 204 ELRLL 208 >gi|307709859|ref|ZP_07646308.1| DNA-binding response regulator [Streptococcus mitis SK564] gi|307619408|gb|EFN98535.1| DNA-binding response regulator [Streptococcus mitis SK564] Length = 199 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMHTLHTVLEGGKEY----SPELMEVVMTHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++++EIA+KL LS TV Y+ + KLDA NR +A A G++ Sbjct: 151 AQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|321314657|ref|YP_004206944.1| two-component response regulator YhcY [Bacillus subtilis BSn5] gi|320020931|gb|ADV95917.1| two-component response regulator (YhcY) [Bacillus subtilis BSn5] Length = 215 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 47/117 (40%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR----NLTE 176 L Y + +E L + G ++ L+ K + + LT Sbjct: 93 LQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLKHMKNQHDPEKEKYYQLTR 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L +G +++EIA L +S TV ++ + KL+ +R QA A+++ Sbjct: 153 REKDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNL 209 >gi|322434206|ref|YP_004216418.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321161933|gb|ADW67638.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 208 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ F L ++ H ++ + E R S + LT RE S L+ Sbjct: 97 LQAGAKGYLLKGMPFDELLKAILAV-HAGKSRIPSPIAEKLADRLSG-QQLTARELSVLE 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++IA L +S TV ++ + KL +R QA A++ G++ Sbjct: 155 RIVAGRANKDIAADLFISEATVKTHVNNLLSKLGVADRTQAATIALQRGFV 205 >gi|51894355|ref|YP_077046.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51858044|dbj|BAD42202.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 203 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 3/111 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCL 182 +GYV+ + + L + + G Y + +E + L+ RE L Sbjct: 92 AGGSGYVLKEAADVELFSAIRAVLSGQTYIYPTLAAKLVEEKAGGERKSVPLSPRELEVL 151 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +L G+T++EIA +L +SV TV Y KL R + + A+ Sbjct: 152 RLVALGHTNQEIALQLNVSVRTVETYKTRICEKLGVYTRSEMVRYALEHKL 202 >gi|330891428|gb|EGH24089.1| LuxR family DNA-binding response regulator [Pseudomonas syringae pv. mori str. 301020] Length = 222 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 7/118 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTER 177 GY++ + + A G +++ E ++ +LT R Sbjct: 98 SAGAVGYLLKDPSRDEVIAGLQRVARGEEALNSTVSARLLRRMTERNTSGAALPESLTPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L L G G+++ EI EKLG++ T A++ KL A +R QA + + G + Sbjct: 158 ERQVLGLVGGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLVS 215 >gi|254776539|ref|ZP_05218055.1| response regulator receiver domain-containing protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 167 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA--RNLTE 176 GY++ ++ LA V A G V+ ++ + + + LT+ Sbjct: 47 AGAAGYLVKSASKAELAQAVTDTAAGRAVFTPSLAGLVLGEYRRIAQSKDDGPTRPRLTD 106 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+ G ++++IAEKL LS TV ++ + KL NR++ AI G Sbjct: 107 RETEVLRYVAKGLSAKQIAEKLSLSHRTVENHVQATFRKLQVANRVELARYAIEHGL 163 >gi|150377494|ref|YP_001314089.1| autoinducer-binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150032041|gb|ABR64156.1| Autoinducer-binding domain protein [Sinorhizobium medicae WSM419] Length = 320 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 72/235 (30%), Gaps = 18/235 (7%) Query: 17 LSPRLHLIQNRIKARN------FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + L L+ + +A N A+ + +A F R + + P + Sbjct: 87 MQTELRLLIDMTEAANDERMIKSAVLSFANAHGF-ERFAYLQTQGDDVQTFNSYPEEWQD 145 Query: 71 TY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 Y D + + W S + +G+ PV Sbjct: 146 IYLGSRYSIIDPVITEAKRRMNVFSWTVDDWPARGRSELRRFKDQAVAHGIRSGVTVPVE 205 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS----SAARNLTERET 179 F + F S + +A A V+ L + S L+ RE Sbjct: 206 GSFGSKMMLTFASSERKADVSKLQDAQDAIQAVLVIHYRLKILAAVTIVSPKTMLSPREA 265 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL A G E A+ G+ TV YL +A KL A + +A A G + Sbjct: 266 MCLMWAMKGKNGPETAKITGIKPRTVQHYLDNARRKLGAQSVPHLVAIARDHGLV 320 >gi|146307690|ref|YP_001188155.1| two component LuxR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145575891|gb|ABP85423.1| two component transcriptional regulator, LuxR family [Pseudomonas mendocina ymp] Length = 213 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 Y++ +S L + + A G + I + + L+ RE LQ A Sbjct: 101 AGAQAYLLKSSLRKELVETIRLVAAGKRH--IPAEIAAELAEHIGQQCLSPREVEVLQAA 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY++ +IA +L ++ TV ++ KL A NR A+A A++ G + Sbjct: 159 ALGYSNRDIALQLRITEDTVKGHMRLIMDKLGANNRTHAVAIAVQRGVL 207 >gi|50954584|ref|YP_061872.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951066|gb|AAT88767.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 225 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 46/125 (36%), Gaps = 14/125 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------- 173 L +G+++ + L + A G +V LELF R Sbjct: 99 LRAGASGFLLKDARPDDLTAAIRAVAAGDAAVSGRVTRAMLELFADRLPTTTESAAPGGD 158 Query: 174 ----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L DG T+ EI L+ TV ++G KL +R+ A+ A Sbjct: 159 PAAALTPREREILLAIADGLTNGEIGATFHLTESTVKTHVGRVLSKLHLRDRVHAVIFAY 218 Query: 230 RFGYI 234 G I Sbjct: 219 DNGLI 223 >gi|260220323|emb|CBA27745.1| hypothetical protein Csp_A03820 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 267 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 42/169 (24%), Positives = 59/169 (34%), Gaps = 29/169 (17%) Query: 88 IWQSIQEETVIESSGQLSV-RLEGGLLPFAGIAF------PVRLGFHKNG-----YVIFT 135 W ++ ++GQ + GL G A V + G YV+F+ Sbjct: 91 RWAEFGKKPFSLNAGQSGFSMEDAGLKSALGGALLKMRSATVHGITDERGSHDCLYVVFS 150 Query: 136 SEFLMLANEVIIEA-----------------HGACYQVITDFLELFKKRSSAARNLTERE 178 ++ E A H A QVI + A LTERE Sbjct: 151 TQEHFTEKERSAMAMVLPYIDTALRQVEHLPHQAPGQVIAPVTYTNGNLPTEADVLTERE 210 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ G T+ EI L +S TV ++ KLD NR QA+ K Sbjct: 211 AEILKWVALGKTNPEIGSILEISAFTVKNHMQRVFKKLDVSNRAQAVGK 259 >gi|229070683|ref|ZP_04203919.1| Two-component protein Kinase [Bacillus cereus F65185] gi|228712450|gb|EEL64389.1| Two-component protein Kinase [Bacillus cereus F65185] Length = 581 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAAR--NL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 461 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETPQSKAAVYEL 520 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 521 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKEEAVQKALEIGII 580 >gi|182435087|ref|YP_001822806.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178463603|dbj|BAG18123.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 213 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 49/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + LA V A G + L + + A LT RE LQL Sbjct: 103 AGASGYLLKDAPPQELAAAVRTAAAGRSALAPSVAHRLMDRMRTPAEALTRRELEVLQLV 162 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+G ++ I+++L LS TV ++L KL +R A+A A I Sbjct: 163 GEGLSNLRISKRLFLSQATVKSHLVHIYAKLGVDSRTSAVAAATARRLI 211 >gi|284030413|ref|YP_003380344.1| LuxR family transcriptional regulator [Kribbella flavida DSM 17836] gi|283809706|gb|ADB31545.1| transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 208 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 3/105 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G + + L + V A G + + D + LTERE L+L G G Sbjct: 107 GVMTTDASPDDLVDAVREVADG---RPVFDVSLALAALRAGDNPLTERECEVLRLIGTGA 163 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T++E+A+ L LS TV YL K A +RI+AI KA G+I Sbjct: 164 TAQEVAQILCLSPGTVRNYLSRILSKTGARSRIEAIRKAQDAGWI 208 >gi|290958798|ref|YP_003489980.1| two component response regulator [Streptomyces scabiei 87.22] gi|260648324|emb|CBG71435.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 256 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G+++ L + V + A G +++ + R+ Sbjct: 106 LHAGASGFLLKDVRRDDLVHAVRVVARGDSLLAPSVARRLVEQYTRPPAARAPRPDPRLG 165 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++ EIA +L +S HTV ++G+ KL +R+QA+ A G Sbjct: 166 LLTGRERETLLLLARGLSNAEIAAELVVSDHTVKTHVGNVLAKLGLRDRVQAVICAYETG 225 Query: 233 YIC 235 I Sbjct: 226 LIA 228 >gi|206969319|ref|ZP_03230274.1| Two-component protein Kinase [Bacillus cereus AH1134] gi|206736360|gb|EDZ53518.1| Two-component protein Kinase [Bacillus cereus AH1134] Length = 595 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S AA L Sbjct: 475 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETPESKAAAYEL 534 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 535 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKEEAVQKALEIGII 594 >gi|92109679|ref|YP_571965.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91802761|gb|ABE65133.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 234 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 74/211 (35%), Gaps = 16/211 (7%) Query: 36 YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY-------GDDFLFHFNSGLLPII 88 +T+ S D R I + D P Y D + + Sbjct: 28 FTVASGFD---RYAYIHVHAGDGVGFTDYPVEWQNIYLEKRYTVIDPVVTTAKRTMKMFA 84 Query: 89 WQSIQEETVIESSGQLSV--RLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLML---AN 143 W + ++ TV S ++ +G++ P+R + + + S+ + Sbjct: 85 WSA-EDPTVWRGSREIKQFYSEATDFGIRSGVSVPIRTSYGRTAMITLASDRRQVELPPW 143 Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + + A Y I L +L+ +E + L + G + IA+ LG+ Sbjct: 144 DPMQAALALAYIHIHLSLASASSLKVGEVSLSAQEATSLSWSSHGKSMNVIADLLGIKPR 203 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV YL +A KL A N QA+ A+ I Sbjct: 204 TVQFYLDNARDKLGASNLQQAVRIAMEKKLI 234 >gi|282863211|ref|ZP_06272271.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562193|gb|EFB67735.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 216 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 57/119 (47%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L +G+++ + + + V + A G A Q+ ++ + + LTE Sbjct: 96 LRAGADGFLLKRARPAEIVHAVRLVASGESLLFPAAVRQLAAEYGTSEARAAMDRAALTE 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE++ L+L G ++ EIA +L + V TV ++ + KL A +R QA+ A G++ Sbjct: 156 RESAVLRLMARGLSNAEIAAELVVGVQTVKTHVSAVLAKLGARDRTQAVIAAYESGFVA 214 >gi|254819425|ref|ZP_05224426.1| two-component system response regulator [Mycobacterium intracellulare ATCC 13950] Length = 218 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-----NLT 175 L G+V+ S L V A G Y V + L ++K + R LT Sbjct: 97 LRAGAAGFVLKDSSAEELIRAVRAVARGDSYLDPAVTSRVLTTYRKAAPGPRGAAIAELT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L L G G ++ EIA KL +S TV +++G KLD +R AI A G + Sbjct: 157 TRELDVLTLIGQGLSNTEIAGKLCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA 216 >gi|289768678|ref|ZP_06528056.1| two-component system response regulator [Streptomyces lividans TK24] gi|289698877|gb|EFD66306.1| two-component system response regulator [Streptomyces lividans TK24] Length = 220 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSS-AARNLT 175 L GYV+ + L GA ++ +L+ + R +T Sbjct: 100 LKAGACGYVLKSVADRDLVEACRAAVRDEPFIYPGAERALVRSYLDRVQGGGGLPERPIT 159 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L +G+TS+EI E L +S TV + + KL +R++ AIR G I Sbjct: 160 EREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGVRDRLELTRYAIRAGLI 218 >gi|238920760|ref|YP_002934275.1| AHL-dependent transcriptional regulator [Edwardsiella ictaluri 93-146] gi|238870330|gb|ACR70041.1| AHL-dependent transcriptional regulator [Edwardsiella ictaluri 93-146] Length = 239 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 27/195 (13%) Query: 62 GDIPNILIETYGDDFLFHFN-------SGLLPIIWQSIQEETVIESSGQLS--VRLEGGL 112 + P+ + Y + H + + P +W E+ + S LS L Sbjct: 45 SNYPDEWVTLYKEHHYQHIDPVVISALRRVSPFLW---DEKITVNSQLNLSKIFNLSKKY 101 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------- 164 G F + ++ + + LA G ++ D E F Sbjct: 102 QVSRGYTFVLHDADNQLAMLSLMVDDRGLAEIERN--RGVLQMLLIDAHERFINGQRQIT 159 Query: 165 -----KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + RE L A G T +EIA LG+ TV ++G+ KL + Sbjct: 160 AQRHCSNKEPIENIFSTRENEILYWASMGKTYQEIALILGIKTGTVKFHIGNVVKKLGVL 219 Query: 220 NRIQAIAKAIRFGYI 234 N AI + I Sbjct: 220 NAKHAIRLGVELQLI 234 >gi|229490268|ref|ZP_04384110.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229322800|gb|EEN88579.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 224 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 10/120 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR---NLT 175 +G++ L + V A G A +IT FL + + S + LT Sbjct: 99 AGASGFIGKGIRAEDLLDAVRTVASGNSLLSPIATSALITRFLSIPSRADSTSGIFGQLT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE + L G +++EIA +L +S T ++ A KLD +R Q + A + G + Sbjct: 159 PRELEVVTLVAMGMSNDEIAAELVISAVTAKTHVNRAMTKLDVRDRAQLVVLAYQCGLVV 218 >gi|56479027|ref|YP_160616.1| nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1] gi|56315070|emb|CAI09715.1| Nitrate/nitrite response regulator [Aromatoleum aromaticum EbN1] Length = 226 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 51/126 (40%), Gaps = 14/126 (11%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR-----------S 168 L GY++ E L + A G Q++ L+ + + Sbjct: 96 TLRAGACGYLLKNIEADALIAAINRAAEGESVISPQMMGKLLKGVRGELPVKTAAQTAVA 155 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S L+ RE L G +++EIA KL L+ TV ++ + KL+ +R+QA A Sbjct: 156 SELNKLSPREREILAFLARGQSNKEIARKLELAESTVKIHVQNVLRKLNLTSRVQAAVFA 215 Query: 229 IRFGYI 234 + G + Sbjct: 216 VEQGIV 221 >gi|21224130|ref|NP_629909.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|256784790|ref|ZP_05523221.1| two-component regulator [Streptomyces lividans TK24] gi|2995293|emb|CAA18322.1| putative two-component regulator [Streptomyces coelicolor A3(2)] Length = 219 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSS-AARNLT 175 L GYV+ + L GA ++ +L+ + R +T Sbjct: 99 LKAGACGYVLKSVADRDLVEACRAAVRDEPFIYPGAERALVRSYLDRVQGGGGLPERPIT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L +G+TS+EI E L +S TV + + KL +R++ AIR G I Sbjct: 159 EREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGVRDRLELTRYAIRAGLI 217 >gi|167753032|ref|ZP_02425159.1| hypothetical protein ALIPUT_01296 [Alistipes putredinis DSM 17216] gi|167659346|gb|EDS03476.1| hypothetical protein ALIPUT_01296 [Alistipes putredinis DSM 17216] Length = 216 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-------RNLTERE 178 G+++ S + + A G Y L + +A L+ RE Sbjct: 98 AGAKGFLMKDSPMDEVLRAIETVAAGGTYFCEEVLRSLASRMQTAVSGYEGSDERLSTRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EIA++L +S TV+ + + K N + A+R G + Sbjct: 158 IEILVCVCRGLSNQEIADELFISKRTVDKHRANILEKTGCKNTASLVVYAVRHGLV 213 >gi|120403820|ref|YP_953649.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119956638|gb|ABM13643.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 207 Score = 98.5 bits (244), Expect = 6e-19, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 6/114 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ------VITDFLELFKKRSSAARNLTERET 179 GY++ ++ L + V A G ++ ++ S A LTERET Sbjct: 92 AGATGYLVKSASKQELGDAVRATAQGRAVFTPGLAGLVLGEFRRIERDSPAGPTLTERET 151 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ G T+++IA +L LS TV ++ + KL NR++ AI G Sbjct: 152 EILRHVAKGLTAKQIASRLSLSHRTVENHVQATFRKLQIGNRVELARYAIEHGL 205 >gi|297579900|ref|ZP_06941827.1| predicted protein [Vibrio cholerae RC385] gi|297535546|gb|EFH74380.1| predicted protein [Vibrio cholerae RC385] Length = 224 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 32/59 (54%) Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L G ++ EI+ L +S TV +L + KL+ NR AIAKAI G+ Sbjct: 163 TDRECELLPWLKLGKSNWEISRLLNISERTVKYHLQNIYRKLETHNRTHAIAKAIELGW 221 >gi|302544547|ref|ZP_07296889.1| putative two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462165|gb|EFL25258.1| putative two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 222 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSA--ARNL 174 L G+++ ++ L V A G VI +L + ++A L Sbjct: 93 LRAGAAGFLLKDTDPEQLVRAVRTLAQGGSVLDPGVTGAVIGGYLAAEAEATAASAVDAL 152 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G+G + +IAE++GL+ TV ++ + KL +NR+QA A R G I Sbjct: 153 TPREREVLALLGEGLANPQIAERMGLAPSTVKDHVRAVLGKLGGLNRVQAAIVADRAGLI 212 Query: 235 C 235 Sbjct: 213 T 213 >gi|238756079|ref|ZP_04617401.1| Two component transcriptional regulator, LuxR family [Yersinia ruckeri ATCC 29473] gi|238705685|gb|EEP98080.1| Two component transcriptional regulator, LuxR family [Yersinia ruckeri ATCC 29473] Length = 209 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE +L + + A G + +TD+L ++ + LTERE L Sbjct: 98 DAGADGYLLKDSEPEVLLEHLCLAAQGESVFSREVTDYLASRHEQINPFAELTERELDVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 Q G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 158 QEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 199 >gi|229818737|ref|YP_002880263.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564650|gb|ACQ78501.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 224 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173 L +G+++ + + + + A G L + A Sbjct: 97 LRAGASGFLLKRAHPDRIVEAIRVVARGDAVLFPEAVRRLVAASPAGATPSPADGPHGAA 156 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L+L G T+ EIA +L L V TV ++G+ KL A +R+QA A Sbjct: 157 IGRLTEREEEVLRLVAAGMTNAEIAAQLWLGVETVKTHVGNVLAKLGARDRLQAAIVAYE 216 Query: 231 FGYIC 235 G++ Sbjct: 217 SGFVV 221 >gi|224552951|gb|ACN54720.1| PagR [Pantoea agglomerans] gi|224552954|gb|ACN54722.1| PagR [Pantoea agglomerans] gi|224552957|gb|ACN54724.1| PagR [Pantoea agglomerans] gi|224552960|gb|ACN54726.1| PagR [Pantoea agglomerans] Length = 210 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 10/185 (5%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG---QLSVRLEGGL 112 N + + DI + D + + W E VI S G Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFW----ENNVILSGGYNLTRIFNESFQY 83 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKR-SS 169 F G FP+ + + S+ + + + ++ L L+ + Sbjct: 84 NIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSEIVSFLTKLHQKTLNLYSQHHQK 143 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ G G T E+A L ++ TV ++G+ KL N A+ Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGT 203 Query: 230 RFGYI 234 + Sbjct: 204 ELRLL 208 >gi|224552948|gb|ACN54718.1| PagR [Pantoea agglomerans] Length = 210 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 10/185 (5%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG---QLSVRLEGGL 112 N + + DI + D + + W E VI S G Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFW----ENNVILSGGYNLTRIFNESFQY 83 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKR-SS 169 F G FP+ + + S+ + + + ++ L L+ + Sbjct: 84 NIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSEIVSFLIKLHQKTLNLYSQHHQK 143 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ G G T E+A L ++ TV ++G+ KL N A+ Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGT 203 Query: 230 RFGYI 234 + Sbjct: 204 ELRLL 208 >gi|94968718|ref|YP_590766.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94550768|gb|ABF40692.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 208 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 4/116 (3%) Query: 122 VRLG--FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 VRL NGY++ ++ L L V A+G V+ +E + + + LT RE Sbjct: 93 VRLALEAGANGYILKSAIDLDLIQAVRRVANGET--VLDPKVEKPTLKGNKSMGLTNREL 150 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 LQL G +++EIA L LSV+TV+ + + L N + + AI+ G + Sbjct: 151 EILQLIVSGKSNKEIASDLSLSVNTVSVHRANIMEGLGIHNTAELVVYAIKNGLVT 206 >gi|312131027|ref|YP_003998367.1| two component transcriptional regulator, luxr family [Leadbetterella byssophila DSM 17132] gi|311907573|gb|ADQ18014.1| two component transcriptional regulator, LuxR family [Leadbetterella byssophila DSM 17132] Length = 210 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 5/117 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLE--LFKKRSSAARNLTERE 178 L GY++ ++ L + G + QV L+ L +++S LT+RE Sbjct: 94 LRAGALGYLLKGTDKGNLLQAISTVFEGQQFLDPQVQNAILQQTLSGRKNSIEVKLTKRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 T L L + Y+++EIA+KL LS+ TV A+ S KLD N + +A+ G I Sbjct: 154 TEILALIANEYSNQEIADKLFLSIRTVEAHRNSLNQKLDIKNTAGLVKEALLRGLIS 210 >gi|308178660|ref|YP_003918066.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307746123|emb|CBT77095.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 201 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +G+++ S L + G + D + + A LTERE L LA Sbjct: 97 GAHGFLVKDSPPAELIAAIRRVHSGDK---VVDPQRAMRSVGAEANPLTEREREILGLAA 153 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +IA + LS TV +L +A K + NRI+A +A G+I Sbjct: 154 AGAPVSQIASGVHLSAGTVRNHLSNAIGKTNTANRIEAARRAREMGWI 201 >gi|299822491|ref|ZP_07054377.1| DNA-binding response regulator [Listeria grayi DSM 20601] gi|299816020|gb|EFI83258.1| DNA-binding response regulator [Listeria grayi DSM 20601] Length = 212 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERE 178 L + Y++ TS +A+ + G +V ++ + LT RE Sbjct: 94 LEAGASSYMLKTSTASEIADAIRATYAGDTVLEPEVTGKMMQRLTAKPEKNLHDELTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G ++EIA++L +++ TV ++ + KLD +R QA A + + Sbjct: 154 NEILLLIAEGKANQEIADELYITLKTVKTHVSNILSKLDVQDRTQAAIYAFQHDLV 209 >gi|104781277|ref|YP_607775.1| response regulator [Pseudomonas entomophila L48] gi|95110264|emb|CAK14971.1| putative response regulator, LuxR family [Pseudomonas entomophila L48] Length = 130 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 5/110 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GYV+ + + HG I+D + S A LT R+ LQL Sbjct: 15 AMGLLGYVVKAANLEDFTQAMQHILHGQKTFPISD-----DRAPSEAVRLTRRQQEILQL 69 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G S+E+A +LGLS+ TVN ++ L NR A+++A+ GY+ Sbjct: 70 LHRGLASKEVAAELGLSLGTVNNHVTGLMRVLGVTNRTHAVSRAMDLGYL 119 >gi|86741939|ref|YP_482339.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86568801|gb|ABD12610.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 213 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 6/112 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTERET 179 GYV+ L + + A G + + D + + +L+ RE Sbjct: 98 AGAAGYVLKEIRGNDLVSAIRTVAAGGSLLSPSVTRRVLDRMRQGPREDPTLASLSARER 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LQ +G T+ +I ++ LS TV Y+ S KL +R QA A++ Sbjct: 158 EILQHIAEGLTNRQIGTRIHLSEKTVKNYVSSILEKLGMTSRTQAAVYALKK 209 >gi|307710890|ref|ZP_07647317.1| transcriptional regulatory protein degU [Streptococcus mitis SK321] gi|307617335|gb|EFN96508.1| transcriptional regulatory protein degU [Streptococcus mitis SK321] Length = 199 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 4/108 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + YV+ L + G EL + + LTE+E + L+ Sbjct: 96 GVDAYVLKERNIADLMQTLHTVLEGRKEY----SPELMEVVMTHPNPLTEQEIAVLKGIA 151 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++++EIA+KL LS TV Y+ + KLDA NR +A A G++ Sbjct: 152 QGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|298717240|ref|YP_003729882.1| transcriptional activator protein PagR [Pantoea vagans C9-1] gi|298361429|gb|ADI78210.1| Transcriptional activator protein PagR [Pantoea vagans C9-1] Length = 230 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 55/182 (30%), Gaps = 17/182 (9%) Query: 66 NILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSG---QLSVRLEGGLLPF 115 + Y D + + W E VI S G + Sbjct: 51 PAWFDVYLERKYQFIDPVIIRGLRCVEDYFW----ENEVILSEGYNLTRIFNESFQYNIY 106 Query: 116 AGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 G FP+ + + EF ++ + + L L+ + Sbjct: 107 RGQTFPLHDYLNNLVVLSVIGKKEFDFDIDKHRAKFMSFLIHLHQKTLNLYSQHQQKKNA 166 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+ DG T EIA L ++ TV ++G+ KL N AI Sbjct: 167 FLSPRERQILKWVSDGKTYAEIAIILSIAERTVKFHMGNVMKKLGVNNARHAIKLGAELR 226 Query: 233 YI 234 + Sbjct: 227 LL 228 >gi|258516412|ref|YP_003192634.1| transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257780117|gb|ACV64011.1| transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 224 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 36/73 (49%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K + LT RE LQL ++ EIA++L +S TV ++ + KL NR Sbjct: 149 VMKGNLANGNTLTRREMEILQLIAISLSNREIAKRLFISEPTVKTHVSNILRKLGQQNRS 208 Query: 223 QAIAKAIRFGYIC 235 QAI + + G I Sbjct: 209 QAIVYSYKNGLIT 221 >gi|256378301|ref|YP_003101961.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922604|gb|ACU38115.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 217 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE---LFKKRSSAARN 173 L +G+V+ + L + + A G +VI +F L + Sbjct: 95 LEAGASGFVLKDCDPEDLVSAIRRLAAGQGLLDQAVTRRVIGEFARRAPLPAVDPAVEDL 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE + L +G ++ EIAE L + TV ++LG A K+ A +R+Q + A + G Sbjct: 155 LTAREKEVVVLLAEGRSNVEIAEALFIEPSTVKSHLGRAMTKIGARDRLQTVVWAYQNGL 214 >gi|224552996|gb|ACN54750.1| PagR [Pantoea sp. C9-1] Length = 210 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 34/182 (18%), Positives = 55/182 (30%), Gaps = 17/182 (9%) Query: 66 NILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSG---QLSVRLEGGLLPF 115 + Y D + + W E VI S G + Sbjct: 31 PAWFDVYLERKYQFIDPVIIRGLRCVEDYFW----ENEVILSEGYNLTRIFNESFQYNIY 86 Query: 116 AGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 G FP+ + + EF ++ + + L L+ + Sbjct: 87 RGQTFPLHDYLNNLVVLSVIGKKEFDFDIDKHRAKFMSFLIHLHQKTLNLYSQHQQKKNA 146 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+ DG T EIA L ++ TV ++G+ KL N AI Sbjct: 147 FLSPRERQILKWVSDGKTYAEIAIILSIAERTVKFHMGNVMKKLGVNNARHAIKLGAELR 206 Query: 233 YI 234 + Sbjct: 207 LL 208 >gi|224552936|gb|ACN54710.1| PagR [Pantoea agglomerans] Length = 210 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 10/204 (4%) Query: 37 TINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEET 96 I + ++ + N + + DI + D + + W E Sbjct: 9 IIYAYAIMNKKDPSQMRIINNNPEWFDIYLERKYQFIDPVIIQSLRCIEDFYW----ENN 64 Query: 97 VIESSG---QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153 VI S G F G FP+ + + S+ + + Sbjct: 65 VILSGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVS 124 Query: 154 Y--QVITDFLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + ++ L L+ + L+ RE L+ G G T E+A L ++ TV ++G Sbjct: 125 FLTKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|224552933|gb|ACN54708.1| PagR [Pantoea agglomerans] Length = 210 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 59/185 (31%), Gaps = 10/185 (5%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG---QLSVRLEGGL 112 N + + DI + D + + W E VI S G Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFW----ENNVILSGGYNLTRIFNESFQY 83 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKR-SS 169 F G FP+ + + S+ + + ++ L L+ + Sbjct: 84 NIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRLKIVSFLIKLHQKTLNLYSQHHQK 143 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ G G T E+A L ++ TV ++G+ KL N A+ Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGT 203 Query: 230 RFGYI 234 + Sbjct: 204 ELRLL 208 >gi|219683473|ref|YP_002469856.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|219621123|gb|ACL29280.1| response regulator of two-component system [Bifidobacterium animalis subsp. lactis AD011] gi|289178826|gb|ADC86072.1| Two-component response regulator [Bifidobacterium animalis subsp. lactis BB-12] Length = 234 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 22/131 (16%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARN----- 173 +G+++ +E L N + A A ++I +E + R Sbjct: 104 AGASGFLLKDTEPETLLNSIRTVHQGNAIIAPTATKRLIEKMMETGVTQEGPGRQQSEVA 163 Query: 174 ----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE L G +++EIA+KL +S+ TV ++ K++A +R+Q Sbjct: 164 AEYTDPELATLTEREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILQKINARDRVQ 223 Query: 224 AIAKAIRFGYI 234 A+ A + Sbjct: 224 AVVFAYENHLV 234 >gi|297197233|ref|ZP_06914630.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197717281|gb|EDY61315.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 223 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA----R 172 L +G+++ L + + A G ++I FL A Sbjct: 97 LRAGASGFLVKDIRPAELLDAIRTVAAGESLLSPGPTSRLIARFLLAPNTAPKPALGGPS 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L L G + EIA+ LGLS T ++ KL A +R Q + A G Sbjct: 157 ELSERERQVLALVARGLNNAEIADALGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|220909912|ref|YP_002485223.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219866523|gb|ACL46862.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 245 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 39/66 (59%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +A LT+RE L+L G+++ EIA KL ++V TV ++ + KL A +R QA A+ Sbjct: 180 SADPLTQRELEVLELIVKGHSNAEIASKLYITVGTVKTHVRNILNKLCADDRTQAAVLAL 239 Query: 230 RFGYIC 235 R G + Sbjct: 240 RSGLVT 245 >gi|182413103|ref|YP_001818169.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840317|gb|ACB74569.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 209 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GYV+ +S L + A G + D RSS LT RE LQ Sbjct: 99 LRAGARGYVLKSSTGEGLIPAIRAVAAGE-PWIPNDVATRLAMRSS-YEELTSREIQVLQ 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++EIA L +S +TV +L + KL R +A+ A++ G I Sbjct: 157 EIAKGKANKEIAAVLAISEYTVKDHLKNIMGKLHVAVRTEAVTAAVQRGII 207 >gi|75906884|ref|YP_321180.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75700609|gb|ABA20285.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 239 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE LQL +G ++ IAE+L ++V TV ++ + KL A +R QA +A+R G Sbjct: 177 TLTERELEVLQLIVEGCSNAVIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 236 Query: 233 YI 234 + Sbjct: 237 LV 238 >gi|309792037|ref|ZP_07686513.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308225930|gb|EFO79682.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 234 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 4/98 (4%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSCLQLAGDGYTSEEIAE 196 L N+ ++ +V+ F EL LT RE L G +++EIA Sbjct: 121 LINDSVLAKPNVATRVLHQFRELAATEDEQTSVLFAPLTSREIEILDCIARGLSNKEIAN 180 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S TV ++ S KL +R A+ AI+ G++ Sbjct: 181 ELSISGQTVKNHITSILSKLQVNDRTMAVIYAIKRGWV 218 >gi|312195087|ref|YP_004015148.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311226423|gb|ADP79278.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 257 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 8/115 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA-ARNLTERE 178 +GY++ ++ L + V A G V+ D ++ + +LT RE Sbjct: 130 GASGYLVKSARPEELVDAVRRTADGVPVFGAGLAALVLGDLSRAARRPAEPGTPSLTARE 189 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G ++++ A +LG+S TV ++ + KL NR++ A+R GY Sbjct: 190 IEVLRLVAKGLSAKDAAARLGVSPRTVQNHVHNVLSKLRLRNRVELTRFAVRAGY 244 >gi|226305629|ref|YP_002765589.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184746|dbj|BAH32850.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 226 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 10/119 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE----------AHGACYQVITDFLELFKKRSSAARNLT 175 +G+++ L + + A Q + LE S LT Sbjct: 98 AGASGFLLKDVPPEQLLDAIRTVHRGDAVIEARATRRLLQHVGPLLEGSAPESQLPEELT 157 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G ++ EIA K +S TV ++G K + +R+QA+ A + G + Sbjct: 158 PREVEVLEAMAYGLSNSEIAAKFHVSETTVKTHVGRVLSKTHSRDRVQAVVFAFQIGLV 216 >gi|325919524|ref|ZP_08181543.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325923815|ref|ZP_08185429.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325545709|gb|EGD16949.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325550000|gb|EGD20835.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 200 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L Y++ + L + + G +VI L + A L+ERE + L+ Sbjct: 94 LDAGVAAYLLKDAPAEQLVSALRQVQRGG--RVIDPQLAV--DAWVEADPLSERERTVLR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG+G ++ EIA++L LS TV +L KL NRI+A A + G++ Sbjct: 150 LAGEGRSASEIAQQLQLSHGTVRNHLSECIGKLGVANRIEAYRLARQKGWL 200 >gi|325003494|ref|ZP_08124606.1| two component system response regulator [Pseudonocardia sp. P1] Length = 222 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 10/118 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARNL---TE 176 +G+++ SE L + + I A +I +F + + + L TE Sbjct: 99 GASGFLVKDSEPADLIHAIRIVHGGEALLAPAVTRTLIAEFAARSRGGPAVSPRLDALTE 158 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G +++EIA +L +S T ++ KL A +R Q + A G + Sbjct: 159 REREVLAEVAAGLSNDEIAGRLHMSPTTAKTHVSRTMTKLGARDRAQLVVVAYESGLV 216 >gi|320333696|ref|YP_004170407.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754985|gb|ADV66742.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 214 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSA-ARNLTER 177 GYV+ ++ L + + A G V+ DF + + S +L ER Sbjct: 95 AGARGYVLKDADASTLLDAIQRVAGGEALLDADMAQNVLDDFRDKREVLPSEKHADLNER 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ET+ L+L GY++++IA +L +S TV L KL NR QA AIR G Sbjct: 155 ETTILKLLAQGYSNQDIALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210 >gi|238792074|ref|ZP_04635710.1| Two component transcriptional regulator, LuxR family [Yersinia intermedia ATCC 29909] gi|238728705|gb|EEQ20223.1| Two component transcriptional regulator, LuxR family [Yersinia intermedia ATCC 29909] Length = 202 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE +L + AHG + +L + + LTERE L Sbjct: 91 DAGADGYLLKDSEPEILLENIRRAAHGENVFSNEVAQYLSSRHEEINPFAELTERELDVL 150 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 Q G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 151 QEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 192 >gi|224552918|gb|ACN54698.1| PagR [Pantoea agglomerans] gi|224552921|gb|ACN54700.1| PagR [Pantoea agglomerans] gi|224552924|gb|ACN54702.1| PagR [Pantoea agglomerans] Length = 210 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 10/204 (4%) Query: 37 TINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEET 96 I + ++ + N + + DI + D + + W E Sbjct: 9 IIYAYAIMNKKDPSQMRIINNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFW----ENN 64 Query: 97 VIESSG---QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153 VI S G F G FP+ + + S+ + + Sbjct: 65 VILSGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVS 124 Query: 154 YQV--ITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + L L+ + + L+ RE L+ G G T E+A L ++ TV ++G Sbjct: 125 FLINLHQKTLNLYSQHNQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|94969470|ref|YP_591518.1| two component LuxR family transcriptional regulator [Candidatus Koribacter versatilis Ellin345] gi|94551520|gb|ABF41444.1| two component transcriptional regulator, LuxR family [Candidatus Koribacter versatilis Ellin345] Length = 215 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L Y++ L + + H ++ + + +LTERE L+ Sbjct: 100 LKAGARAYILKGHVHKDLLDTIRAV-HAGQKRIPAEIAAELADH-AVDDHLTERELDVLR 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G+G +++ IA++L + TV +++ + KL A +R A+ +R G I Sbjct: 158 LIGEGNSNKLIADQLSIGEATVKSHVTNILSKLGASDRAHAVTIGLRRGII 208 >gi|94984423|ref|YP_603787.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554704|gb|ABF44618.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 214 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSA-ARNLTER 177 GYV+ ++ L + + A G V+ DF + ++ S +L ER Sbjct: 95 AGARGYVLKDADAATLLDAIRRVASGEALLDADLAQNVLDDFRDKREELPSEKHADLNER 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ET L+L G+++++IA +L +S TV L KL NR QA AIR G Sbjct: 155 ETMILKLLAQGFSNQDIALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210 >gi|187928756|ref|YP_001899243.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187930011|ref|YP_001900498.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12J] gi|187725646|gb|ACD26811.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|187726901|gb|ACD28066.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] Length = 201 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L+ERE L + G TS EIA LGLS TV+ ++ +A KL RI+A+ + Sbjct: 133 AHPPVQLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHMDNAREKLGVATRIEAVVR 192 Query: 228 AIRFGYI 234 A G I Sbjct: 193 ASSSGII 199 >gi|311899662|dbj|BAJ32070.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 228 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 12/121 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA-----RN 173 G+++ + L + + A G +V+ +F S A Sbjct: 97 AGAAGFLLKRTPPEQLLDGIRTVASGEALLSPSVTRRVLAEFARAAPPPPSPAVRAVLDR 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G G ++ EIA L L TV ++ KL NR+ A+ A G Sbjct: 157 LTPREHQVLRLLGRGRSNPEIAAALYLGEATVKTHVRRVLDKLGVRNRVHAVVFAFDHGL 216 Query: 234 I 234 + Sbjct: 217 V 217 >gi|219848256|ref|YP_002462689.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219542515|gb|ACL24253.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 236 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Query: 141 LANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 L N+ ++ +V+ F EL + +S LT RE L G +++EIA Sbjct: 129 LINDAVLARPNVAARVLHQFRELAATEEEDSASLFAPLTSREIEILDCIARGLSNKEIAN 188 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S TV ++ S KL +R A+ AI+ G+I Sbjct: 189 ELSISGQTVKNHITSILSKLQVNDRTMAVIVAIKKGWI 226 >gi|323489447|ref|ZP_08094676.1| two-component response regulator-like protein [Planococcus donghaensis MPA1U2] gi|323396941|gb|EGA89758.1| two-component response regulator-like protein [Planococcus donghaensis MPA1U2] Length = 213 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 43/112 (38%), Gaps = 4/112 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERETSC 181 GY + E L + G EL K + A + LT RE Sbjct: 96 AGAAGYQLKDIEPDELVASLRSLMRGENTLHPKASSELLKAPAEPAPHTINQLTPREQEV 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G ++ EIA L ++ TV ++ + +KL +R QA A++ G Sbjct: 156 LAELTKGKSNREIASALFVTEKTVKTHISNIFIKLAVQDRTQAALYAVKHGL 207 >gi|306834744|ref|ZP_07467810.1| LuxR family DNA-binding response regulator [Corynebacterium accolens ATCC 49726] gi|304569381|gb|EFM44880.1| LuxR family DNA-binding response regulator [Corynebacterium accolens ATCC 49726] Length = 205 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 42/109 (38%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L V+ A L ++ ++L+ RE L+ Sbjct: 97 AGAMGYLLKDSPEEELHEAVLNTAARQRTLAPEVVNLLAQRVGQPEQSLSTRELEILRAL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A +L +S TV +L KL R A+ A I Sbjct: 157 ATGSSNKELANQLFISEATVKTHLIHIYQKLGVDTRTAAVTVARERKLI 205 >gi|229820935|ref|YP_002882461.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566848|gb|ACQ80699.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 220 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL----ELFKKRSSAAR 172 L G+++ + L + + + A G ++I + + + + R Sbjct: 95 LRAGAGGFLLKDALATDLLSAIRVVAAGDAIVAPPITRRLIERHIGSPHDPLPRTEAELR 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++ EIA +L ++ TV ++ + KL +R+QA+ + G Sbjct: 155 VLTSREREVLSLIARGLSNAEIAGRLFVTEGTVKGHVSAILAKLGLRDRVQAVIFSYECG 214 Query: 233 YI 234 + Sbjct: 215 LV 216 >gi|220906489|ref|YP_002481800.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863100|gb|ACL43439.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 236 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 28/65 (43%), Positives = 39/65 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LTERE LQL +G ++ IAEKL ++V TV ++ + KL A +R QA +A+ Sbjct: 171 EASPLTERELEVLQLIVEGDSNALIAEKLFITVGTVKTHVRNILNKLCADDRTQAAVRAL 230 Query: 230 RFGYI 234 R G I Sbjct: 231 RSGLI 235 >gi|170782617|ref|YP_001710951.1| putative two component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169157187|emb|CAQ02370.1| putative two component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 232 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRS--SAARNL 174 L G+V+ +E V A G +V+ +F + L Sbjct: 112 LEAGARGFVLKDAEPEEFIQAVRALAEGRAALDGVTTRRVMDEFTRRRVASAVHPGVEVL 171 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE ++L GDG +++EI +L + TV ++L KL +R+Q + R G + Sbjct: 172 TPREQDIVRLLGDGLSNDEIGGRLVIETSTVKSHLTRIMTKLGTRDRLQTVVWGYRSGLL 231 >gi|331696706|ref|YP_004332945.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951395|gb|AEA25092.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 238 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 51/114 (44%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRS---SAARNLTERETS 180 Y++ ++ ++ + V G Y + L + + R L+ RE Sbjct: 124 AGAQAYLLKSASPAVVTDGVKRVLDGGVYADPTVAPLLATGTRVPGTDNTPRELSAREVE 183 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQL DG +++EI E L LS TV ++L KL +R Q +A A+R G I Sbjct: 184 VLQLVADGQSNKEIGEALSLSALTVKSHLSRIGRKLGTGDRAQMVALAMRAGVI 237 >gi|300866500|ref|ZP_07111190.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300335457|emb|CBN56350.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 241 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L GY++ IAEKL ++V TV ++ + KL A +R QA A+R G Sbjct: 179 PLTERELEVLELIVQGYSNAAIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVLALRSG 238 Query: 233 YI 234 + Sbjct: 239 LV 240 >gi|224552945|gb|ACN54716.1| PagR [Pantoea agglomerans] Length = 210 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 10/185 (5%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG---QLSVRLEGGL 112 N + + DI + D + + W E VI S G Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRCIEDFYW----ENNVILSGGYNLTRIFNESFQY 83 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKR-SS 169 F G FP+ + + S+ + + + ++ L L+ + Sbjct: 84 NIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLIKLHQKTLNLYSQHHQK 143 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ G G T E+A L ++ TV ++G+ KL N A+ Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGT 203 Query: 230 RFGYI 234 + Sbjct: 204 ELRLL 208 >gi|239979006|ref|ZP_04701530.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291450884|ref|ZP_06590274.1| two-component system regulator [Streptomyces albus J1074] gi|291353833|gb|EFE80735.1| two-component system regulator [Streptomyces albus J1074] Length = 237 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 12/120 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA-----ARN 173 GY++ ++ L + V A G V+ ++ L + A Sbjct: 104 AGATGYLVKSAGTEELIDAVHRTARGDAVFTPGLAGLVLGEYRRLAAGPAPTRGKPDAPR 163 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L+L G + ++IAE+L +S TV ++ + KL NR++ + AI G Sbjct: 164 LTARETEVLRLVAKGLSYKQIAERLVISHRTVQNHVQNTLGKLQLHNRVELVRYAIEAGL 223 >gi|224552915|gb|ACN54696.1| PagR [Pantoea agglomerans] Length = 210 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 10/204 (4%) Query: 37 TINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEET 96 I + ++ + N + + DI + D + + W E Sbjct: 9 IIYAYAIMNKKDPSQMRIINNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFW----ENN 64 Query: 97 VIESSG---QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153 VI S G F G FP+ + + S+ + + Sbjct: 65 VILSGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIFS 124 Query: 154 YQV--ITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + + L L+ + + L+ RE L+ G G T E+A L ++ TV ++G Sbjct: 125 FLINLHQKTLNLYSQHNQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|119964172|ref|YP_949850.1| two-component system response regulator [Arthrobacter aurescens TC1] gi|119951031|gb|ABM09942.1| two-component system response regulator [Arthrobacter aurescens TC1] Length = 218 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + + V+ A G L + + + L+ RE L+L Sbjct: 107 AGASGYMLKDAPPEQIRQAVLSAAAGQTALAPEVAARLMGRIRNPSPALSGREVQLLELL 166 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +A++L +S TV +L KL NR AIA A + I Sbjct: 167 ATGMSNRAMAKQLFISEATVKTHLVHIYSKLGVDNRTAAIAVATQRRII 215 >gi|37523666|ref|NP_927043.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214671|dbj|BAC92038.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 225 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK------KRSSAARNLTER 177 +GYV T L + Y +V T F LF +S + +LTER Sbjct: 107 GASGYVFKTHLAAQLCAAITTVLRDEIYLPPEVATQFFRLFHYYAGHTVQSRSRIHLTER 166 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G +++EIA L +++ TV A+L + KL +R QAI A++ G + Sbjct: 167 EQEVLHWLVRGASNDEIARNLYITIATVKAHLSAIFEKLQVTSRTQAIVAALKLGLV 223 >gi|302872826|ref|YP_003841462.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor obsidiansis OB47] gi|302575685|gb|ADL43476.1| two component transcriptional regulator, LuxR family [Caldicellulosiruptor obsidiansis OB47] Length = 216 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 50/110 (45%), Gaps = 10/110 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG----------ACYQVITDFLELFKKRSSAARN 173 L F +GY++ +S+ + + + G + L+ + +N Sbjct: 95 LSFGADGYILKSSDAQHIIDTIYAVLDGKVVIDKEIALFVANIFKKDLQNVNTTENKLKN 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L+ERE +L GY++++I++ L +S TV Y+ + KL+ NR Q Sbjct: 155 LSERELEIARLIAQGYSNKDISKMLFISEGTVRNYISTILEKLELKNRTQ 204 >gi|224552927|gb|ACN54704.1| PagR [Pantoea agglomerans] Length = 210 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 10/185 (5%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG---QLSVRLEGGL 112 N + + DI + D + + W E VI S G Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFW----ENNVILSGGYNLTRIFNESFQY 83 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--ITDFLELFKKRSSA 170 F G FP+ + + S+ + + + + L L+ + + Sbjct: 84 NIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLINLHQKTLNLYSQHNQK 143 Query: 171 ARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ G G T E+A L ++ TV ++G+ KL N A+ Sbjct: 144 KNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGT 203 Query: 230 RFGYI 234 + Sbjct: 204 ELRLL 208 >gi|111022138|ref|YP_705110.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821668|gb|ABG96952.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 222 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 11/119 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS----AARNL 174 +GY++ ++ + L + V A G V+ ++ + + A L Sbjct: 103 AGASGYLVKSASVVELLDAVRATAAGQAVFTPGLAGLVLGEYRRMSSAPADEQGLAVPRL 162 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERET L+ G ++++IA KL LS TV ++ + KL NR++ AI G Sbjct: 163 TERETEVLRFVAKGLSAKQIATKLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221 >gi|291483274|dbj|BAI84349.1| hypothetical protein BSNT_01381 [Bacillus subtilis subsp. natto BEST195] Length = 220 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 14/123 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK-----------RSS 169 L +GY++ + V+ G ++ L +K+ + Sbjct: 94 LEEGASGYLLKDMSADTIVKAVMTVHSGGMVLPPELTAQMLNEWKREKQLKGINEIEKPK 153 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LTERE L G G ++EIAEKL ++ TV ++ + KL +R QA ++ Sbjct: 154 ELLDLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSV 213 Query: 230 RFG 232 R+G Sbjct: 214 RYG 216 >gi|256822428|ref|YP_003146391.1| two component LuxR family transcriptional regulator [Kangiella koreensis DSM 16069] gi|256795967|gb|ACV26623.1| two component transcriptional regulator, LuxR family [Kangiella koreensis DSM 16069] Length = 212 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 8/122 (6%) Query: 122 VRL-GFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN 173 + + +GY++ S L + V A G Y + T + + K+ +N Sbjct: 91 IHMVRAGASGYLLKDSASEELIDAVKALATGKTYYSQYAASVLATQYSQPDKEWQDPYKN 150 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L DG T+++IA L +SV T + G KL N + + A + Sbjct: 151 LTQREREVFHLVVDGKTTKDIARTLDISVKTAENHRGKVLDKLGVSNTAELVRYAAKHNL 210 Query: 234 IC 235 + Sbjct: 211 LV 212 >gi|226312803|ref|YP_002772697.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095751|dbj|BAH44193.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 228 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 15/124 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA------- 171 GY++ ++ + + + G + + + L+ ++ + Sbjct: 104 AGAVGYMLKDADSQEMLDLIRRAHQGEALFHTVTAAKALAEALQGQRETPDSTTTSQSVL 163 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE LQ DGY +++IA+ L +S TV ++ K+ +R QA+AKA+R Sbjct: 164 LDELTDRELDVLQQIADGYRNDQIAQNLFISEGTVKTHVHRILQKMGVEDRTQAVAKALR 223 Query: 231 FGYI 234 + Sbjct: 224 HKIV 227 >gi|54027465|ref|YP_121707.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54018973|dbj|BAD60343.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 222 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 11/119 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN----L 174 +GY++ ++ L V A G V+ ++ + + L Sbjct: 103 AGASGYLVKSASAAELIEAVRATAAGQPVFTPGLAGLVLGEYRRMASAPARPDEPHRPAL 162 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERET L++ G ++++IA +LGLS TV ++ + KL NR++ AI G Sbjct: 163 TERETEVLRMVAKGLSAKQIAARLGLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221 >gi|269956411|ref|YP_003326200.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305092|gb|ACZ30642.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 220 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKR--SSAARNL 174 L +G++ SE + + G A +I ++ A +L Sbjct: 96 LRAGASGFLGKGSEPGEIIAAIRAVHGGEALLSPTATRALIDRYVRPSPSDVVPQALEHL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L L G G ++ EIA++L +S HT ++ KL A +R Q + A G + Sbjct: 156 TEREVEILTLVGSGLSNAEIADRLVISPHTAKTHVNRVMTKLHAHDRAQLVIAAYENGLV 215 >gi|41410415|ref|NP_963251.1| hypothetical protein MAP4317c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41399249|gb|AAS06867.1| hypothetical protein MAP_4317c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 218 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-----NLT 175 L G+V+ S L V A G Y V + L ++K + R LT Sbjct: 97 LRAGAAGFVLKDSSAEELIRAVRAVARGEGYLDPAVTSRVLTTYRKAAPGPRGAAIAELT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L L G G ++ EIA++L +S TV +++G KLD +R AI A G + Sbjct: 157 TRERDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA 216 >gi|311067076|ref|YP_003971999.1| two-component hybrid sensor and regulator [Bacillus atrophaeus 1942] gi|310867593|gb|ADP31068.1| two-component hybrid sensor and regulator [Bacillus atrophaeus 1942] Length = 596 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 47/120 (39%), Gaps = 12/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----------LT 175 +GY++ + E LA + + GA + D + A LT Sbjct: 478 GADGYLLKSIESRELAESIRLVYRGAT-MIDQDLFHRMWDGTDEAEPSGLKFDGKEYGLT 536 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +RE L L G + IA +L LS TV Y + KL NR +A+ KA G + Sbjct: 537 KRELEVLNLLSQGIRYKTIASELYLSNGTVRNYASTLYDKLGVKNREEAVQKARDTGLLS 596 >gi|290958642|ref|YP_003489824.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260648168|emb|CBG71276.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L +G+++ + LA+ V + A G ++IT+F +L + +A Sbjct: 95 LRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSKLVQAPRPSAATQLA 154 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RET L L G ++ EIAE+L ++ T+ ++ VKL +R QA A Sbjct: 155 YGELTDRETEVLVLIAQGLSNSEIAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYE 214 Query: 231 FGYIC 235 + Sbjct: 215 ARLVT 219 >gi|182440060|ref|YP_001827779.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326780729|ref|ZP_08239994.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178468576|dbj|BAG23096.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326661062|gb|EGE45908.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 216 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L +G+++ + + + V + A G A Q+ ++ + + LTE Sbjct: 96 LRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPAAVRQLAAEYGTDKARAALDRAALTE 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE + L+L G ++ EIA L + TV ++ S KL A +R QA+ A G++ Sbjct: 156 REAAVLRLMARGLSNAEIAAALVVGTETVKTHVSSVLAKLGARDRTQAVIAAYESGFVA 214 >gi|307705686|ref|ZP_07642533.1| DNA-binding response regulator [Streptococcus mitis SK597] gi|307620766|gb|EFN99855.1| DNA-binding response regulator [Streptococcus mitis SK597] Length = 199 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSVADLMKTLYTVLEGRKEY----SPELMEVVMTHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS TV Y+ + KLDA NR A A G++ Sbjct: 151 AQGLSNQEIADQLYLSNGTVRNYVTNILSKLDASNRTDAANIAKESGWL 199 >gi|257484466|ref|ZP_05638507.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013268|gb|EGH93324.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 240 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 14/181 (7%) Query: 63 DIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 ++ + + Y D + + + L + WQ + + + V L Sbjct: 64 NVDDAWGKAYRQREFITQDPVIRCYRNQLGFVNWQDAFRHYPVSACYEEIVDTCELLP-- 121 Query: 116 AGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 A H G TS + + E ++ + + +R Sbjct: 122 ---AISYGYMNHCRGADSVTSVCTLGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSRG 178 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ G Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 234 I 234 I Sbjct: 239 I 239 >gi|256396087|ref|YP_003117651.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362313|gb|ACU75810.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 213 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 5/112 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCL 182 GY++ + L + A G ++ + + R A LT RE L Sbjct: 100 AGAIGYLLKDTTREQLVEAIRGAARGETVLAPRIAAKLVA--RMRQPAPVVLTTREVDVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ +I ++L ++ TV +L KLD +R A+ A+ G + Sbjct: 158 NGVADGLSNADIGKRLVIAEATVKTHLLRVFAKLDVSDRTHAVVTALERGLL 209 >gi|37523973|ref|NP_927350.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35214979|dbj|BAC92345.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 229 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 40/65 (61%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LTERE LQL +G ++++IA++L ++V TV ++ + KL A +R QA A+ Sbjct: 164 EASPLTERELEVLQLIVEGRSNQDIADQLYITVGTVKTHVRNILSKLCADDRTQAAVTAL 223 Query: 230 RFGYI 234 R G + Sbjct: 224 RAGLV 228 >gi|23006062|ref|ZP_00048562.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 195 Score = 98.5 bits (244), Expect = 7e-19, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---------NLTER 177 +G+++ +E + L V + A G T L + + A R LT R Sbjct: 73 GASGFLVKDTEPVDLVRAVRVAARGDALLSPTVTRRLLSRVADATRAVGPVRGVEELTPR 132 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G ++EEIA L LS TV ++ KL A +R Q + A G + Sbjct: 133 EREVLVEVAGGLSNEEIAGSLFLSESTVKTHVSRVMAKLGARDRAQLVVAAYESGVV 189 >gi|330684760|gb|EGG96455.1| putative response regulator protein VraR [Staphylococcus epidermidis VCU121] Length = 207 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 44/113 (38%), Gaps = 2/113 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSC 181 L +GY + E L + G + L+ + L++RET Sbjct: 95 LEKGADGYEMKDVEPQKLIETIHNVLDGKRIIHPDAKHVLDSMSSKPHFTNKLSKRETEV 154 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G T++EIA L +S T+ ++ KL +R QA A+ I Sbjct: 155 LKEMVKGKTNKEIANTLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207 >gi|325576790|ref|ZP_08147405.1| nitrate/nitrite response regulator protein NarL [Haemophilus parainfluenzae ATCC 33392] gi|325160996|gb|EGC73114.1| nitrate/nitrite response regulator protein NarL [Haemophilus parainfluenzae ATCC 33392] Length = 209 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E +L ++ A G I + L K +LT+RE L Sbjct: 98 DAGADGYLLKDTEPDVLLEQIKRIAQGEVILSDSIKNLLLERKHTVDPMDSLTDREMDVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +L G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 158 RLIATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|311032377|ref|ZP_07710467.1| two-component response regulator LiaR [Bacillus sp. m3-13] Length = 210 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 54/116 (46%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSS--AARNLTERE 178 L Y++ TS+ +AN V G +V ++ ++++ LT RE Sbjct: 94 LEAGATSYMLKTSKASEIANAVRSTYKGQSILEPEVAGKMMQKMRRKTEILPHEELTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T++EIA++L +++ TV ++ + KL +R QA+ A + + Sbjct: 154 MEILLLMTQGKTNQEIADELFIALKTVKVHVSNILAKLQVQDRTQAVIYAFKHSLV 209 >gi|223934727|ref|ZP_03626647.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896682|gb|EEF63123.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 210 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 6/110 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFL---ELFKKRSSAARNLTER 177 L NGY++ +S L + G + + + L A NL+ R Sbjct: 95 LKAGANGYLVKSSPPEQLLEAIRDVYKGGAPMSSHIASKVVKHFHLIGSSPREAENLSPR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 E L+L G+ +EI +KL + TV Y+ + K+ +R++A+AK Sbjct: 155 EQEVLELLALGFIYKEIGDKLNIGTETVRTYVKNICQKMHVRSRLEAVAK 204 >gi|325510834|gb|ADZ22470.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 217 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--ITDFLELFKKRSSAAR-----NLTE 176 L GY++ + L V G ++ L KK+ S ++TE Sbjct: 96 LSLGAKGYLLKDTTREELIRTVESAFRGELLLQPEVSKVLFNVKKKESTINTSFNASITE 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQ G S+EIA +G+S TV A+L + KL +R +A+AKAI G I Sbjct: 156 RELFILQSIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIEKGII 213 >gi|282863714|ref|ZP_06272772.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282561415|gb|EFB66959.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 222 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G+++ + LA+ V + A G ++IT+F ++ A Sbjct: 98 LRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTRRLITEFSKIATAPRPPAMARIG 157 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERET L L G +++EIA L ++ T+ ++ VKL +R QA A Sbjct: 158 DLTERETEVLVLIAQGLSNQEIASHLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 217 Query: 233 YIC 235 + Sbjct: 218 LVT 220 >gi|229818603|ref|YP_002880129.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564516|gb|ACQ78367.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 221 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK--KRSSAARNLTE 176 +G+++ +E L V + A G +++ E + K +LT+ Sbjct: 98 AGASGFLVKDTEPAELVRAVRVAAAGDALLSPTVTRRLLAQVAESTRAVKAVPGLDHLTD 157 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L +G +++EIA KL LS TV ++ KL A +R Q + A G + Sbjct: 158 REREVLVTVAEGLSNDEIAAKLFLSPSTVKTHVSRTMTKLAARDRAQLVVAAYESGLV 215 >gi|182415183|ref|YP_001820249.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842397|gb|ACB76649.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 212 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G+V+ L + H V + +R A L+ RE L+ Sbjct: 102 LKAGASGFVVKEMALERLLEAIRKV-HAGEQYVPPEIAMRMGERLMA--QLSPRELDVLK 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++EIA +L + T ++ + KL +R QAI A+R G I Sbjct: 159 LVAKGRSNKEIAAELHVVEGTAKIHVANILTKLGVSDRTQAIVVAVRRGII 209 >gi|148655092|ref|YP_001275297.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148567202|gb|ABQ89347.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 242 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 4/98 (4%) Query: 141 LANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 L N+ +I +V+ F EL ++ S+ LT RE L G +++EIA Sbjct: 127 LINDSVIAKPHVATRVLHQFRELAATEDERTSALFAPLTSREIEILDCIARGLSNKEIAS 186 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S TV ++ S KL +R A+ AI+ G+I Sbjct: 187 QLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRGWI 224 >gi|307707707|ref|ZP_07644186.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] gi|307616205|gb|EFN95399.1| DNA-binding response regulator [Streptococcus mitis NCTC 12261] Length = 199 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERNIADLMQTLHTVLEGRKEY----SPELMEVVMTHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++++EIA+KL LS TV Y+ + KLDA NR +A A G++ Sbjct: 151 AQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|307327124|ref|ZP_07606313.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887205|gb|EFN18202.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 216 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 8/117 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSS-AARNLT 175 L +G+++ + +L V G +++ F + ++ +S A LT Sbjct: 97 LSNGASGFLLKDAGPALLTEAVRAAVRGDAMVAPQITLRLLQHFTKARRRGASEPAEPLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +RE +Q G T+ EIA +L ++ TV +LGS KL NR++ A A R G Sbjct: 157 DREEEVIQGIARGLTNPEIAAELYIAPSTVKTHLGSVQAKLGLRNRVEVAAWAFRSG 213 >gi|299533898|ref|ZP_07047264.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|298718125|gb|EFI59116.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 223 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 12/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSS---------AARNL 174 GY++ S F A V+ A+G + L L + + L Sbjct: 104 GAVGYLLKNSWFGDYAQAVLQVANGGASITPSLAKKILSLVSRSQTYVVPASSLTKEEKL 163 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +ERE L+L GY+S EI+ +L +S TV+ ++ + KL A R A+ A G I Sbjct: 164 SEREIEILKLIACGYSSPEISTQLKISTLTVSTHVKNMYRKLQAKTRAHAVKAASLRGLI 223 >gi|310767240|gb|ADP12190.1| DNA-binding transcriptional activator SdiA [Erwinia sp. Ejp617] Length = 240 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 76/225 (33%), Gaps = 24/225 (10%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-------D 74 +I+ +++ Y++ P + + P +E Y D Sbjct: 28 RIIEQQLRELELDFYSLFIRHPVPFTR-------PKTFLYSNYPEDWLEHYFREDFYQLD 80 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L +S +W SSG F G++ V G Sbjct: 81 PVLKMCSSPGKIWLWDD-----EAMSSGVRVFENARNYGIFHGLSCSVMASNRSVGIFSV 135 Query: 135 TSEFLMLANEVIIEAHGACYQV----ITDFLELFK-KRSSAARNLTERETSCLQLAGDGY 189 ++ + E+ + + +++ ++ +L++RE L+ +G Sbjct: 136 STAKSLKTIELTPVMELKIQYISELSMASLIKINDISMATTKLDLSQRELEILKWTAEGK 195 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EI+ L +S +TVN + + +A N+ Q + A G I Sbjct: 196 TSAEISLILSISENTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240 >gi|298241311|ref|ZP_06965118.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554365|gb|EFH88229.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 214 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS-AARNLT 175 + GY++ ++ L V + G ++I F L + S+ A +LT Sbjct: 96 MRAGARGYLLKDADQDELLRAVKAVSRGEAIFSPAIAQRMIHYFSALPQTASAIAFPDLT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ERE L L G ++ IA+ LS+ TV ++ + KL +R QAI +A G Sbjct: 156 EREREILLLIAQGESNAAIAKHFTLSLKTVQNHVSNIFSKLQVADRAQAIVRARDAGL 213 >gi|237650688|ref|ZP_04524940.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974] gi|237821211|ref|ZP_04597056.1| DNA-binding response regulator [Streptococcus pneumoniae CCRI 1974M2] Length = 199 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + LTE+E + L+ Sbjct: 95 AGVDAYVLKERNIADLMQTLHTVLEGGKEY----SPELMEVVMMHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++++EIA+KL LS TV Y+ + KLDA NR +A A G++ Sbjct: 151 AQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|284033634|ref|YP_003383565.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283812927|gb|ADB34766.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 212 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA-ARNLT 175 L G++ + L + + A G A VIT L +LT Sbjct: 94 LRAGACGFLPKDTRPDALLDAIRTVAAGEALLSPGATRAVITRALSRPDAPPPERLASLT 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G +++EIA+ L +S T ++ KL A +R+ + A G + Sbjct: 154 AREREVLRLVAAGRSNQEIADDLVVSPLTAKTHVARILAKLGARDRVHLVIAAYEAGLL 212 >gi|261497168|gb|ACX83628.1| putative two-component response regulator [uncultured soil bacterium V167] Length = 191 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 43/111 (38%), Positives = 58/111 (52%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + LA + A G Q I L L SSA LT+RE L+ Sbjct: 83 LDAQVGGYLLKDAPPGQLAVAIRKVAEG--RQAIDPSLALA-AWSSAENPLTQREIDTLR 139 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA +G S EIA++L L+V T+ YL SA +KL A NR+ AI A G++ Sbjct: 140 LAAEGAGSSEIADQLHLAVGTIRNYLTSAVLKLHARNRLDAILIAQDAGWL 190 >gi|290960962|ref|YP_003492144.1| response regulator [Streptomyces scabiei 87.22] gi|260650488|emb|CBG73604.1| putative response regulator [Streptomyces scabiei 87.22] Length = 225 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ +L + + A G A +IT FL S Sbjct: 97 LRSGASGFLGKDVTADLLLDGIRTVAAGDTLLSPAATRTLITRFLAAPAPGSRLTTPERL 156 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + LA +G +++EIAEKL +S TV ++ A KL A +R Q + A + Sbjct: 157 TTLTSREREVMSLAAEGSSNDEIAEKLYVSPLTVRTHVHRAMTKLGARDRAQLVVMAYQS 216 Query: 232 GYI 234 G + Sbjct: 217 GLV 219 >gi|302530526|ref|ZP_07282868.1| two-component system response regulator [Streptomyces sp. AA4] gi|302439421|gb|EFL11237.1| two-component system response regulator [Streptomyces sp. AA4] Length = 207 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 4/112 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCL 182 GY++ + LA + G V + + L+ RE L Sbjct: 96 AGAAGYLLKDASRTELAGAIRAAHRGETVLAPSVAGKLVHRM-RNPEPVSPLSAREVEVL 154 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G T+ EI +L + TV +L KL +R A+ A+ + Sbjct: 155 RLVAKGRTNAEIGRELHIGEATVKTHLLRVFSKLGVSDRTAAVTTALDRHLL 206 >gi|259908860|ref|YP_002649216.1| Regulatory protein [Erwinia pyrifoliae Ep1/96] gi|224964482|emb|CAX55992.1| Regulatory protein [Erwinia pyrifoliae Ep1/96] Length = 240 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 75/225 (33%), Gaps = 24/225 (10%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-------D 74 +I+ +++ Y++ P + + P +E Y D Sbjct: 28 RIIEQQLRELELDFYSLFIRHPVPFTR-------PKTFLYSNYPEDWLEHYFREDFYQLD 80 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L S +W SSG F G++ V G Sbjct: 81 PVLKMCGSPGKIWLWDD-----EAISSGVRVFENARNYGIFHGLSCSVMASNRSVGIFSM 135 Query: 135 TSEFLMLANEVIIEAHGACYQV----ITDFLELFK-KRSSAARNLTERETSCLQLAGDGY 189 ++ + E+ + + +++ ++ +L++RE L+ +G Sbjct: 136 STANSLKTIELTPVMELKIQYISELSMASLIKINDISMATTKLDLSQRELEILKWTAEGK 195 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EI+ L +S +TVN + + +A N+ Q + A G I Sbjct: 196 TSAEISLILSISENTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240 >gi|312196401|ref|YP_004016462.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311227737|gb|ADP80592.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 251 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 1/105 (0%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGY 189 Y++ + LA V A G L + R+ LT RET L G Sbjct: 141 YLLKDAPLETLAEAVRAVARGETVLAPPVAARLASRLRAPDPVTLTRRETEVLAAVARGR 200 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ EI +L + TV +L KL +R A+ A+ G + Sbjct: 201 TNAEIGRELFIGEATVKTHLLRVFAKLQVDDRTHAVTAALERGLL 245 >gi|167584589|ref|ZP_02376977.1| LuxR family transcriptional regulatory protein [Burkholderia ubonensis Bu] Length = 222 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN-----LT 175 L + + + + A G C +++ L K A LT Sbjct: 102 LAGGATALLPRGATPGEITAAIEAVAAGLCVLSPEILARLLAEHKAPRQTASAALVEMLT 161 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L + +G ++EIA +L +S +TV +L S KL A +R +A+ + +R G + Sbjct: 162 PREIEVLTMLAEGLGNKEIARQLDISDNTVKFHLSSIFGKLGASSRTEAVMQGMRHGLV 220 >gi|149004513|ref|ZP_01829227.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] gi|147757571|gb|EDK64593.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS69] Length = 189 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + LTE+E + L+ Sbjct: 85 AGVDAYVLKERNIADLMQTLHTVLEGGKEY----SPELMEVVMMHPNPLTEQEIAVLKGI 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++++EIA+KL LS TV Y+ + KLDA NR +A A G++ Sbjct: 141 AQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 189 >gi|121606516|ref|YP_983845.1| two component LuxR family transcriptional regulator [Polaromonas naphthalenivorans CJ2] gi|120595485|gb|ABM38924.1| two component transcriptional regulator, LuxR family [Polaromonas naphthalenivorans CJ2] Length = 292 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 13/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDF------LELFKKRSSAARN 173 GY++ S F ++ +G ++++ F +E Sbjct: 172 GATGYLVKNSWFGNFPQAILQVVNGGASITPNLARRLLSKFEPPQANVEPLPVNQGKDNK 231 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L G++S EI +L +S T N ++ + KL+ NR QA++ A G Sbjct: 232 LSEREQQVLKLVASGHSSTEIGARLVISWQTANTHIKNIYRKLNVRNRAQAVSFAANHGL 291 >gi|302532515|ref|ZP_07284857.1| two-component system regulator [Streptomyces sp. C] gi|302441410|gb|EFL13226.1| two-component system regulator [Streptomyces sp. C] Length = 259 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA-------RN 173 L +G+++ + L + V A G V +E + R+ Sbjct: 129 LRAGASGFLLKDTPPERLISAVTTIAGGDMLFAPAVTRRLIEAYSARTEGPGGDDRTLSR 188 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++EIA +L ++ TV +L KL +R QA+A A G Sbjct: 189 LTNREQDVLRLVARGLGNDEIAAELVVTEATVKTHLHRTMTKLGLRSRAQAVAVAYEAGL 248 Query: 234 IC 235 + Sbjct: 249 VV 250 >gi|156741214|ref|YP_001431343.1| LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232542|gb|ABU57325.1| transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 204 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 H G + +A +I+ A +++ LT RE L+L Sbjct: 97 HDVGAAELAAALHAVAQGLIVLAPNLAARLLQ--ARQSPVEEPTGEPLTARERDVLELVS 154 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G ++++IA+KL +S HTV +L S KL +R +A+ + R G I Sbjct: 155 QGLSNKQIAQKLHISEHTVKFHLSSLFAKLGVSSRTEAVNRGARQGIIT 203 >gi|207722648|ref|YP_002253084.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum MolK2] gi|206587830|emb|CAQ18412.1| nitrate/nitrite response regulator protein [Ralstonia solanacearum MolK2] Length = 201 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L + G TS EIA LGLS TV+ ++ +A KL RI+A+ KA G Sbjct: 138 PLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSAG 197 Query: 233 YI 234 I Sbjct: 198 II 199 >gi|159897239|ref|YP_001543486.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159890278|gb|ABX03358.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 240 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 48/121 (39%), Gaps = 19/121 (15%) Query: 133 IFTSEFLMLANEVIIEAHGA-------------CYQVITDFLELF------KKRSSAARN 173 + L + AHG +V+ F EL + SS Sbjct: 105 SKEIDPTQLVGMIRDVAHGRYVINESVMSKPHVATRVLNQFRELSNVANNSEDTSSMFAP 164 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G +++EIA +L +S TV ++ S KL +R A+ AI+ G+ Sbjct: 165 LTSREIEILDCIARGLSNKEIANQLSISGQTVKNHITSILSKLQVNDRTMAVIHAIQQGW 224 Query: 234 I 234 I Sbjct: 225 I 225 >gi|284050625|ref|ZP_06380835.1| two component transcriptional regulator, LuxR family protein [Arthrospira platensis str. Paraca] gi|291567571|dbj|BAI89843.1| two-component response regulator [Arthrospira platensis NIES-39] Length = 208 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR--NLTERE 178 L + Y + + L + GA Y QV +E K + L+ RE Sbjct: 93 LSSGADAYCVKGASVDSLIVAIQAAYEGATYLDPQVARVVMEHLKPPTPQTNLGTLSPRE 152 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G ++ EIAE L LS +T+ ++ KL +R+ A+R G + Sbjct: 153 LEVLKLMVEGKSNPEIAEALYLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSGLV 208 >gi|284031285|ref|YP_003381216.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810578|gb|ADB32417.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 220 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 15/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDF--------LELFKKRS 168 LG +G+++ + + L + A GA Y +VI + + Sbjct: 94 LGDGASGFLLKSGDPRELIAGLKAVAEGAAYLSPKVAQRVIAELGAGTGGGRMARAAAAK 153 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE L L G G ++ EIA +L L TV AY+ + +L NR+QA A Sbjct: 154 DQVDVLSPRELEVLSLVGAGLSNAEIAARLFLVEGTVKAYVSAVLTRLGVKNRVQAAIIA 213 Query: 229 IRFGYI 234 G + Sbjct: 214 YEAGLV 219 >gi|283478850|emb|CAY74766.1| DNA-binding transcriptional activator SdiA [Erwinia pyrifoliae DSM 12163] Length = 242 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 75/225 (33%), Gaps = 24/225 (10%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYG-------D 74 +I+ +++ Y++ P + + P +E Y D Sbjct: 30 RIIEQQLRELELDFYSLFIRHPVPFTR-------PKTFLYSNYPEDWLEHYFREDFYQLD 82 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L S +W SSG F G++ V G Sbjct: 83 PVLKMCGSPGKIWLWDD-----EAISSGVRVFENARNYGIFHGLSCSVMASNRSVGIFSM 137 Query: 135 TSEFLMLANEVIIEAHGACYQV----ITDFLELFK-KRSSAARNLTERETSCLQLAGDGY 189 ++ + E+ + + +++ ++ +L++RE L+ +G Sbjct: 138 STANSLKTIELTPVMELKIQYISELSMASLIKINDISMATTKLDLSQRELEILKWTAEGK 197 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS EI+ L +S +TVN + + +A N+ Q + A G I Sbjct: 198 TSAEISLILSISENTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 242 >gi|228475909|ref|ZP_04060619.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis SK119] gi|314936099|ref|ZP_07843446.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] gi|228270064|gb|EEK11534.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis SK119] gi|313654718|gb|EFS18463.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] Length = 207 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY I E L + + + + ++ ++ L++RE L+ Sbjct: 98 GADGYEIKDVEPQKLIATITKVLNNEKIIHPKAKNVIDAMHEKPHFNNKLSKREMEVLKE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+++IA+ L +S TV ++ KL +R QA AI I Sbjct: 158 MVKGKTNKDIAKSLFVSEKTVKTHVSHIFNKLQVSDRTQAAIYAIENKLI 207 >gi|118465118|ref|YP_884392.1| two-component system response regulator [Mycobacterium avium 104] gi|118166405|gb|ABK67302.1| two-component system response regulator [Mycobacterium avium 104] Length = 218 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 36/120 (30%), Positives = 52/120 (43%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-----NLT 175 L G+V+ S L V A G Y V + L ++K + LT Sbjct: 97 LRAGAAGFVLKDSSAEELIRAVRAVARGEGYLDPAVTSRVLTTYRKAAPGPHGAAIAELT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L L G G ++ EIA++L +S TV +++G KLD +R AI A G + Sbjct: 157 TRERDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA 216 >gi|15807682|ref|NP_285334.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6460582|gb|AAF12288.1|AE001862_114 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 211 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + LA+ + H + E + A LTERE L+ Sbjct: 105 LDAGARGYLLKDAPSHELADAIRRV-HAGGRAIDAGLAE---EIWDAQSPLTEREIQVLR 160 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G ++ IA +LG+ V TV YL A KL A NR +A KA G++ Sbjct: 161 AAETGRSTAAIAAELGIGVGTVRNYLSEAIGKLGAENRAEAARKARERGWL 211 >gi|324997378|ref|ZP_08118490.1| putative two-component system response regulator [Pseudonocardia sp. P1] Length = 239 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS-AARNLT 175 L +G+V+ E L V A +++ F+ + + A LT Sbjct: 114 LRAGASGFVLKDVEPEDLQVAVRTVHAGHELFAPSVTRRLVGSFVPADPEPGAGPAGALT 173 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L L G ++ EIA +L L TV ++ + KLD +R+Q + A G + Sbjct: 174 ERERQVLGLVAAGLSNAEIAARLVLGGTTVKTHVSNLLTKLDLRDRVQLVVFAYEHGLV 232 >gi|297159648|gb|ADI09360.1| putative response regulator [Streptomyces bingchenggensis BCW-1] Length = 221 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ L + A G A +IT FL + A Sbjct: 97 LRAGASGFLGKDVTADALLTAIRTVASGDALLSPLATRALITRFLATPAPGNHLAPPERL 156 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + LA +G ++ EIAE+L +S TV +++ A KL A +R Q + A + Sbjct: 157 AVLTAREREVMALAAEGMSNHEIAERLVVSPLTVRSHIHRAMTKLHARDRAQLVVVAYQS 216 Query: 232 GYIC 235 G + Sbjct: 217 GLVT 220 >gi|124516028|gb|EAY57537.1| putative two component transcriptional regulator, LuxR family [Leptospirillum rubarum] Length = 211 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 7/116 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTERE 178 +GY + + L + G+ Y + L R + L+ RE Sbjct: 97 SAGADGYCLKDTTVDSLLLAIRAAGMGSVY-LDPAIAHLALNRIRVLDYPANDNPLSPRE 155 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T L+L G ++ EI + G+S+ TV A++ S KL A R A KAI+ G I Sbjct: 156 TEILKLLSKGLSNREIGDIAGISLSTVKAHIQSILEKLSASTRADAAVKAIKKGLI 211 >gi|83749508|ref|ZP_00946497.1| Transcriptional regulator [Ralstonia solanacearum UW551] gi|207738514|ref|YP_002256907.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] gi|83723820|gb|EAP71009.1| Transcriptional regulator [Ralstonia solanacearum UW551] gi|206591882|emb|CAQ58788.1| two-component response regulator protein [Ralstonia solanacearum IPO1609] Length = 201 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L + G TS EIA LGLS TV+ ++ +A KL RI+A+ KA G Sbjct: 138 PLSEREVEVLAWSARGKTSGEIATILGLSKRTVDFHIDNARQKLGVATRIEAVVKASSAG 197 Query: 233 YI 234 I Sbjct: 198 II 199 >gi|330879892|gb|EGH14041.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. race 4] Length = 240 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 65/181 (35%), Gaps = 14/181 (7%) Query: 63 DIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 ++ + + Y D + + + L + WQ + + + + V L Sbjct: 64 NVDDAWGKAYRQREFIPQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLP-- 121 Query: 116 AGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 A H G TS + E ++ + + +R Sbjct: 122 ---AISYGYMNHCRGADSVTSVCTLGEGGRAISAEQKYLMSSLMPVLHSVARGLKFCSRG 178 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ +A+ G Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGL 238 Query: 234 I 234 I Sbjct: 239 I 239 >gi|85708110|ref|ZP_01039176.1| two-component response regulator [Erythrobacter sp. NAP1] gi|85689644|gb|EAQ29647.1| two-component response regulator [Erythrobacter sp. NAP1] Length = 217 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 6/114 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTER 177 L GYV+ +E L + G + + + LT R Sbjct: 96 LAAGAAGYVLKDTEIGDLRAAINQVMAGQSALPLDLVSAAMRAENRPEPKGDLSQILTSR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E ++L +G T++EIA KL +S TV ++ KL +R QA A++ Sbjct: 156 EQEVVELVAEGLTNKEIARKLDISPATVKVHVERLIGKLGVADRTQAAVMAVKL 209 >gi|307277198|ref|ZP_07558302.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX2134] gi|306506128|gb|EFM75294.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX2134] Length = 197 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 36/103 (34%), Positives = 52/103 (50%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 I + + +L V IE Q I +L K S L++RE L+ A +G+ Sbjct: 90 AIKSGAWGLLNKNVTIEELYDDLQKIHHGTDLLPKCQSTLDVLSKREKEILKCAAEGFKQ 149 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EIAE+L +S TVN +L S KL+ + I AI +AI G I Sbjct: 150 QEIAEQLHISRRTVNNHLVSINNKLEVNSTISAIIQAIELGII 192 >gi|320011831|gb|ADW06681.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 520 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAAR---N 173 L +G+++ LA+ V A +++ F + R + Sbjct: 388 LSAGASGFLLKDVTPEHLASAVRTVRTGDALLAPAITRRLVQRFARHGGDTADLHRDLAS 447 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ E+A +L L+ TV ++ KL +R+QA+ A G Sbjct: 448 LTPRELEVLGLLARGLSNAELAARLHLAETTVKTHVARVLAKLGLRDRVQAVIVAYETGL 507 Query: 234 I 234 + Sbjct: 508 V 508 >gi|256617156|ref|ZP_05474002.1| salavaricin two-component system response regulator [Enterococcus faecalis ATCC 4200] gi|257087415|ref|ZP_05581776.1| salavaricin two-component system response regulator [Enterococcus faecalis D6] gi|312899812|ref|ZP_07759131.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0470] gi|256596683|gb|EEU15859.1| salavaricin two-component system response regulator [Enterococcus faecalis ATCC 4200] gi|256995445|gb|EEU82747.1| salavaricin two-component system response regulator [Enterococcus faecalis D6] gi|295113419|emb|CBL32056.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Enterococcus sp. 7L76] gi|311293062|gb|EFQ71618.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX0470] gi|315025432|gb|EFT37364.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX2137] gi|315166424|gb|EFU10441.1| transcriptional regulator, LuxR family [Enterococcus faecalis TX1341] Length = 197 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 36/103 (34%), Positives = 52/103 (50%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 I + + +L V IE Q I +L K S L++RE L+ A +G+ Sbjct: 90 AIKSGAWGLLNKNVTIEELYDDLQKIHHGTDLLPKCQSTLDVLSKREKEILKCAAEGFKQ 149 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EIAE+L +S TVN +L S KL+ + I AI +AI G I Sbjct: 150 QEIAEQLHISRRTVNNHLVSINNKLEVNSTISAIIQAIELGII 192 >gi|302873825|ref|YP_003842458.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] gi|307689930|ref|ZP_07632376.1| two component transcriptional regulator, LuxR family protein [Clostridium cellulovorans 743B] gi|302576682|gb|ADL50694.1| two component transcriptional regulator, LuxR family [Clostridium cellulovorans 743B] Length = 220 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--ITDFLELFKKRSSAARN-----LTE 176 L GY++ S L V G I+ + KK S + N +TE Sbjct: 99 LALGARGYLLKDSTREELIRTVEAAIRGELLLQPEISGIIFGAKKESKESNNTFNAGITE 158 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQ G TS+EIA +G++ TV A+L + KL +R QA+A AI G I Sbjct: 159 RELFVLQAVARGCTSKEIAVDMGIAERTVKAHLTNIYSKLKVESRPQAVAVAIEQGII 216 >gi|156741561|ref|YP_001431690.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156232889|gb|ABU57672.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 242 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 4/98 (4%) Query: 141 LANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 L N+ +I +V+ F EL ++ S+ LT RE L G +++EIA Sbjct: 127 LINDSVIAKPHVATRVLHQFRELAATEDERTSALFAPLTSREIEILDCIARGLSNKEIAT 186 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S TV ++ S KL +R A+ AI+ G+I Sbjct: 187 QLSISGQTVKNHITSILSKLQVNDRTMAVIYAIQRGWI 224 >gi|305673633|ref|YP_003865305.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|305411877|gb|ADM36996.1| two-component response regulator (paired with YhcY) [Bacillus subtilis subsp. spizizenii str. W23] Length = 215 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 43/117 (36%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARNLTE 176 L Y + +E L + + V+T LT Sbjct: 93 LQAGAKAYQLKDTEPEELVKTLRQVHDGQYKLSSAIMPHVLTHMRNQHDPEKEKIYQLTR 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L +G +++EIA L +S TV ++ + KL+ +R QA A+++ Sbjct: 153 REKDVLNEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNL 209 >gi|239985867|ref|ZP_04706531.1| two component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 221 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSAARN--L 174 L +G+++ +E L V G ++I +F K+ ++AA L Sbjct: 96 LRNGASGFLVKDTEPEELLRAVRAVVGGDALLSPGVTRRLIAEFAARSKEPTAAASLALL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE + L G G ++EEIA +L +S T ++ VKL A +R Q + A G + Sbjct: 156 TEREREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|229161240|ref|ZP_04289227.1| DNA-binding response regulator [Bacillus cereus R309803] gi|228622336|gb|EEK79175.1| DNA-binding response regulator [Bacillus cereus R309803] Length = 211 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 6/114 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFL---ELFKKRSSAARNLTER 177 L +GY + + L +I G +V L + K++ + LT+R Sbjct: 95 LEAGADGYQLKEVQPEQLVASIIAVHEGNANFHPKVTPALLGRPAVKKEKENPFAMLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L+ G +++EIA L ++ TV ++ + KL+ +R QA A++ Sbjct: 155 EQEVLREIAKGRSNKEIAAALHITEQTVKTHVSNVLAKLEVDDRTQAALYAVKH 208 >gi|225021584|ref|ZP_03710776.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii ATCC 33806] gi|305681229|ref|ZP_07404036.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|224945575|gb|EEG26784.1| hypothetical protein CORMATOL_01606 [Corynebacterium matruchotii ATCC 33806] gi|305659434|gb|EFM48934.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 215 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L G ++ S L V A G +VI +F +S++ LT Sbjct: 97 LEAGACGILLKDSSMTDLVEGVRRAALGEGLVDASLTRRVIAEFTRRKSIFTSSSEVLTP 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE C+ G ++ EIA L L TV +L SA K NR+Q + A R G + Sbjct: 157 RELDCVAQLCQGMSNNEIATTLFLEPSTVKTHLSSAMAKTGTHNRVQLVIWAFRNGVV 214 >gi|224552912|gb|ACN54694.1| PagR [Pantoea agglomerans] gi|224552930|gb|ACN54706.1| PagR [Pantoea agglomerans] gi|224552963|gb|ACN54728.1| PagR [Pantoea agglomerans] gi|224552966|gb|ACN54730.1| PagR [Pantoea agglomerans] Length = 210 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 10/204 (4%) Query: 37 TINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEET 96 I + ++ + N + + DI + D + + W E Sbjct: 9 IIYAYAIMNKKDPSQMRIINNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFW----ENN 64 Query: 97 VIESSG---QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153 VI S G F G FP+ + + S+ + + Sbjct: 65 VILSGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVS 124 Query: 154 Y--QVITDFLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + ++ L L+ + L+ RE L+ G G T E+A L ++ TV ++G Sbjct: 125 FLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|224552903|gb|ACN54688.1| PagR [Pantoea agglomerans] gi|224552906|gb|ACN54690.1| PagR [Pantoea agglomerans] Length = 210 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 10/204 (4%) Query: 37 TINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEET 96 I + ++ + N + + DI + D + + W E Sbjct: 9 IIYAYAIMNKKDPSQMRIINNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFW----ENN 64 Query: 97 VIESSG---QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153 VI S G F G FP+ + + S+ + + Sbjct: 65 VILSGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVS 124 Query: 154 Y--QVITDFLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + ++ L L+ + L+ RE L+ G G T E+A L ++ TV ++G Sbjct: 125 FLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEVAVILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNATHAVKLGTELRLL 208 >gi|21219585|ref|NP_625364.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|8744963|emb|CAB95289.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] Length = 221 Score = 98.1 bits (243), Expect = 8e-19, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NLTER 177 +G+++ +E L V G ++I +F K+ ++ LTER Sbjct: 99 GASGFLVKDTEPEELLRAVRAVVDGDALLSPGVTRRLIAEFAVRSKEPAAPGEMARLTER 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L G G ++EEIA +L +S T ++ VKL A +R Q + A G + Sbjct: 159 EREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|302532622|ref|ZP_07284964.1| two-component system response regulator [Streptomyces sp. C] gi|302441517|gb|EFL13333.1| two-component system response regulator [Streptomyces sp. C] Length = 226 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173 L +G+++ +E LA V A G L + A Sbjct: 93 LRSGASGFLLKDTEPEQLAQLVRTLAAGGVVMSPKASRALLRGHPGAGAPQDADVARVGL 152 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L L DG ++ +I ++ LS TV ++ S KL +R+QA A R G Sbjct: 153 LSDRERDVLVLIADGLSNADIGTRIHLSQGTVKDHVSSILTKLRVTSRVQAALLAERAGL 212 Query: 234 IC 235 + Sbjct: 213 LS 214 >gi|254476925|ref|ZP_05090311.1| two component transcriptional regulator, LuxR family [Ruegeria sp. R11] gi|214031168|gb|EEB72003.1| two component transcriptional regulator, LuxR family [Ruegeria sp. R11] Length = 203 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 42/110 (38%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T + N V A G Y I + L+ RE L+ Sbjct: 93 LDAGAAGFVPKTLPAKSMINAVRFMAMGEQYAPIDFMTAVEDTPCPLTSTLSPREIEMLR 152 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G ++EIA L ++ TV ++ S K+ NR QA A G Sbjct: 153 GLSEGKANKEIARDLNIAEPTVKLHMKSLYRKMKVSNRTQAALVARDKGL 202 >gi|206601912|gb|EDZ38394.1| Putative two component transcriptional regulator, LuxR family [Leptospirillum sp. Group II '5-way CG'] Length = 211 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 7/116 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTERE 178 +GY + + L + A + L R L+ RE Sbjct: 97 SAGADGYCLKDTTVDSLLLAIRA-ADMGSVYLDPAIAHLALNRIRLPGHPENDNPLSPRE 155 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T L+L G ++ EI + G+S+ TV A++ S KL A R A KAI+ G I Sbjct: 156 TEILKLLSKGLSNREIGDIAGISLSTVKAHIQSILEKLSASTRADAAVKAIKKGLI 211 >gi|156744138|ref|YP_001434267.1| ATP-dependent transcription regulator LuxR [Roseiflexus castenholzii DSM 13941] gi|156235466|gb|ABU60249.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 309 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 9/144 (6%) Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 ++ E+ SS + + + AG V L + + ++ A Sbjct: 174 ALLEQAAGNSSNAIRMLARALEIGRAGGYVRVFLDEGEEMRTLLAQLRRDDFAASLLAAF 233 Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 G + +S+ LTERE L+L +G ++ EIAEKL LSV TV ++ Sbjct: 234 GKPAHI---------DQSALIEPLTEREMDVLKLVAEGLSNPEIAEKLYLSVGTVKTHVK 284 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 KL +R+ A KA G I Sbjct: 285 HIYGKLGVDDRVTAAGKARELGLI 308 >gi|23100277|ref|NP_693744.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22778509|dbj|BAC14778.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 210 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA--RNLTERE 178 L Y++ TS+ +A + G +V + + + A LTERE Sbjct: 94 LEAGATSYMLKTSKASEIAKAIRSTYEGQSILEPEVTGKIMNRMRTGQNTALHEQLTERE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G +++EIA +L +++ TV ++ + KL+ +R QA+ A + + Sbjct: 154 KEILLLMAKGKSNQEIANELFIALKTVKVHVSNILGKLEVHDRTQAVIYAFQNKLV 209 >gi|328883448|emb|CCA56687.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 220 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR---- 172 L +G+++ + LA+ V + A G ++IT+F + Sbjct: 94 LRAGASGFLLKDASARQLADGVRVVAAGEALLAPTVTKRLITEFAKAPGSSPRPPAMAQI 153 Query: 173 -NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERET L L G ++ EIA+ L ++ T+ ++ VKL +R QA A Sbjct: 154 GELTERETEVLVLIAQGLSNAEIADHLVVAESTIKTHVSRILVKLALRDRTQAAVFAYEA 213 Query: 232 GYI 234 G + Sbjct: 214 GLV 216 >gi|169631593|ref|YP_001705242.1| two-component LuxR family response regulator [Mycobacterium abscessus ATCC 19977] gi|169243560|emb|CAM64588.1| Putative two-component system response regulator, LuxR family [Mycobacterium abscessus] Length = 222 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 10/118 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA---RNLT 175 GY++ ++ L + V A G V+ +F + ++ A L+ Sbjct: 103 AGATGYLVKSASAAELIDAVRATAKGQAVFTPGLAGLVLGEFRRMSSAPAADADETPRLS 162 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +RET L+L G ++++IA +L LS TV ++ S KL NR++ AI G Sbjct: 163 DRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQSTLRKLQLGNRVELTRYAIEHGL 220 >gi|282899743|ref|ZP_06307706.1| orrA (Two Component Transcriptional Regulator, LuxR family) [Cylindrospermopsis raciborskii CS-505] gi|281195358|gb|EFA70292.1| orrA (Two Component Transcriptional Regulator, LuxR family) [Cylindrospermopsis raciborskii CS-505] Length = 238 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 40/65 (61%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + LT+RE L+L DG ++ +IAEKL ++V TV ++ + KL A +R QA +A+ Sbjct: 173 ESSPLTQRELEILELIVDGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 232 Query: 230 RFGYI 234 R G + Sbjct: 233 RSGLV 237 >gi|299137407|ref|ZP_07030589.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298600812|gb|EFI56968.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 206 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + + G ++I + A L+ERE L+ Sbjct: 98 AGAAGYLLKNMLRKDLLDTIRAVHAGK--RIIPPVIAADLVEHLADDALSEREIEVLRSV 155 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++ +AE+L +S TV ++ S KL A +R A+ A++ G+I Sbjct: 156 ASGNSNKLVAEQLAVSEATVKGHMKSILSKLGAQDRTHAVTIALKRGFI 204 >gi|17229196|ref|NP_485744.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17135524|dbj|BAB78070.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 239 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE LQL +G ++ IAE+L ++V TV ++ + KL A +R QA +A+R G Sbjct: 177 TLTERELEVLQLIVEGCSNAVIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 236 Query: 233 YI 234 + Sbjct: 237 LV 238 >gi|331696989|ref|YP_004333228.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326951678|gb|AEA25375.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 237 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL----ELFKKRSSAAR 172 L GY+ + + + + ++ E Sbjct: 103 LRAGARGYLTKDAGGPEIREALRRVLDDRAAIDPAVQHHLLEALAGGRPEPVPVAPQRPA 162 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G ++ EIA +L +S TV +++ K+DA +R QA+A A R G Sbjct: 163 GLTAREAEVLTLVAEGLSNAEIARRLVVSEGTVKSHMNHLLAKIDARDRAQAVAFAYRNG 222 Query: 233 YIC 235 + Sbjct: 223 LVA 225 >gi|298243907|ref|ZP_06967714.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556961|gb|EFH90825.1| transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 514 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L +G T+ IA +L +S+ TV ++ KL A +R QA+A A+++G Sbjct: 453 ELTEREREVLRLMSEGLTNRAIASRLLISIETVKTHIHHIMQKLQARDRTQAVALAMKYG 512 Query: 233 YI 234 I Sbjct: 513 LI 514 >gi|294628934|ref|ZP_06707494.1| two-component system response regulator [Streptomyces sp. e14] gi|292832267|gb|EFF90616.1| two-component system response regulator [Streptomyces sp. e14] Length = 226 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 14/125 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLE-------LFKKRSS 169 L +G++ SE L + + I A G +I FL RS Sbjct: 97 LRAGASGFLGKGSEPEELLSAIRIAAQGEALLSPVATKGLIARFLAQGDADDGRDPARSG 156 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L G++++EIAE+L +S TV ++ A KL A +R Q + A Sbjct: 157 RLEALTVREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAY 216 Query: 230 RFGYI 234 G + Sbjct: 217 ESGLV 221 >gi|271961858|ref|YP_003336054.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505033|gb|ACZ83311.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 216 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA-RNLTER 177 +GY++ ++ + V A G V+ ++ L +R + LT+R Sbjct: 98 AGASGYLVKSASREEFLDAVRRTAEGEPVFTPGLAGLVLGEYRRLATQRPADDGPRLTDR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ET L+L G + ++AE+L LS TV ++ + KL NR + + AI G Sbjct: 158 ETEVLRLVAKGLSYRQVAERLVLSHRTVQNHVQNTLNKLQLHNRAELVRYAIERGL 213 >gi|226312583|ref|YP_002772477.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226095531|dbj|BAH43973.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 215 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSAARNLTE 176 L GY++ + + A ++++ +F + + LT Sbjct: 96 LKKGAQGYLLKNMKPEAWHEYLRAIAVDETPMTRELAFRILKEFAPIGS-DVAQPSKLTS 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L L G ++ +I+ KL +S HTV +L + KL NR+Q A ++ Sbjct: 155 REREILGLVAKGLSNRDISSKLVISEHTVKNHLKNILQKLHLENRVQLARYAFEQSWMS 213 >gi|254390047|ref|ZP_05005268.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197703755|gb|EDY49567.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 723 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN-----LT 175 L +G++ L + + G +++T + F LT Sbjct: 597 LRAGASGFLPKDVSPEELTAALRTVSAGDAVVAPRLLTRLIGTFVAPQRTTEEVRLDGLT 656 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RET L+L G + IAE+LG+ V TV ++ S KL +R QA+ A G + Sbjct: 657 PRETEVLRLIATGLDNTGIAEELGIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGLVS 716 >gi|254412403|ref|ZP_05026177.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] gi|196180713|gb|EDX75703.1| response regulator receiver domain protein [Microcoleus chthonoplastes PCC 7420] Length = 271 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 36/66 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LTERE L+L G ++ IAEKL ++V TV ++ + KL +R QA A+ Sbjct: 206 EAYPLTERELEVLELIVAGASNAAIAEKLYITVGTVKTHVRNILNKLCVDDRTQAAVHAL 265 Query: 230 RFGYIC 235 R G I Sbjct: 266 RSGLIT 271 >gi|15599074|ref|NP_252568.1| transcriptional regulator NarL [Pseudomonas aeruginosa PAO1] gi|107103394|ref|ZP_01367312.1| hypothetical protein PaerPA_01004464 [Pseudomonas aeruginosa PACS2] gi|116051915|ref|YP_789242.1| transcriptional regulator NarL [Pseudomonas aeruginosa UCBPP-PA14] gi|218889841|ref|YP_002438705.1| transcriptional regulator NarL [Pseudomonas aeruginosa LESB58] gi|254236778|ref|ZP_04930101.1| two-component response regulator NarL [Pseudomonas aeruginosa C3719] gi|254242570|ref|ZP_04935892.1| two-component response regulator NarL [Pseudomonas aeruginosa 2192] gi|296387604|ref|ZP_06877079.1| transcriptional regulator NarL [Pseudomonas aeruginosa PAb1] gi|313109299|ref|ZP_07795267.1| two-component response regulator NarL [Pseudomonas aeruginosa 39016] gi|9950059|gb|AAG07266.1|AE004805_4 two-component response regulator NarL [Pseudomonas aeruginosa PAO1] gi|115587136|gb|ABJ13151.1| putative nitrate/nitrite response regulator; NarL [Pseudomonas aeruginosa UCBPP-PA14] gi|126168709|gb|EAZ54220.1| two-component response regulator NarL [Pseudomonas aeruginosa C3719] gi|126195948|gb|EAZ60011.1| two-component response regulator NarL [Pseudomonas aeruginosa 2192] gi|218770064|emb|CAW25826.1| two-component response regulator NarL [Pseudomonas aeruginosa LESB58] gi|310881769|gb|EFQ40363.1| two-component response regulator NarL [Pseudomonas aeruginosa 39016] Length = 219 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--KRSSAARNLTERE 178 L +GY++ E L + A G Q+ + + RS + LTERE Sbjct: 104 LRAGADGYLLKDMEPERLLEHIRQAATGQMTLSPQLTQILAQALRGDDRSKSLDELTERE 163 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ GY+++ IA KL ++ TV ++ KL +R++A A+ + Sbjct: 164 RQILRQIAHGYSNKMIARKLDITEGTVKVHVKRVLHKLGMRSRVEAAVWAVENDLV 219 >gi|226363539|ref|YP_002781321.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226242028|dbj|BAH52376.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 224 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 GY++ ++ + V A+G + ++ + + LT+RE Sbjct: 106 AGARGYLVKGADPGEVERAVRAVANGEMILGAAVAARAMSFMAASRRMEPAVFPELTDRE 165 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L GY + I+ +L LS TV ++ + KL +R AI +A G Sbjct: 166 REVLDLVARGYDNASISRRLVLSPKTVRNHVSNVLAKLGVPDRPAAIVRARDAGL 220 >gi|254390623|ref|ZP_05005837.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294812218|ref|ZP_06770861.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326440627|ref|ZP_08215361.1| two component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197704324|gb|EDY50136.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324817|gb|EFG06460.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 228 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L +G++ +E L N + I A G +I FL + R Sbjct: 97 LRAGASGFLGKGAEPEELLNAIRIVAAGEALLSPTATKGLIARFLAQGGDGADEQRAAAY 156 Query: 174 ------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L L G +++EI E+L +S TV ++ A KL A +R Q + Sbjct: 157 GERLNALTGREREVLVLVAGGLSNDEIGERLDVSPLTVKTHVNRAMAKLGARDRAQLVVT 216 Query: 228 AIRFGYI 234 A G + Sbjct: 217 AYESGLV 223 >gi|282861577|ref|ZP_06270641.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563393|gb|EFB68931.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 190 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L H +G+++ +E LA + G +V+ L L + L+ RET L+ Sbjct: 83 LAAHASGFLLKDTEPARLAAAIREVVAGG--RVVDPELAL-SALQTGESPLSARETEVLR 139 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G EIA L LS TV YL +A +LDA NR+ A+ A G++ Sbjct: 140 LAAAGEEVPEIARALFLSAGTVRNYLTAAVTRLDARNRMDAVRIARNAGWL 190 >gi|330823094|ref|YP_004386397.1| two component LuxR family transcriptional regulator [Alicycliphilus denitrificans K601] gi|329308466|gb|AEB82881.1| two component transcriptional regulator, LuxR family [Alicycliphilus denitrificans K601] Length = 224 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 15/120 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK------------KRS 168 L GY++ T + +LA + A G +++ + F+ + Sbjct: 98 LRHGAQGYLLKTIDGDLLAQAIRRAARGEPVVSPEMMGKLVAAFQSQGAPEPDPGPMPQE 157 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A L+ RE L+ G +++EIA +L ++ TV ++ KL +R+QA A Sbjct: 158 DPAPQLSPREQEVLREIARGASNKEIARQLSIAETTVKIHVQHILRKLGLTSRVQAAVYA 217 >gi|284045440|ref|YP_003395780.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949661|gb|ADB52405.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 228 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLE---LFKKRSSAARN 173 L +G+++ S L + A G +VI +E L + Sbjct: 101 LRAGASGFLLKRSSPEDLRRAIHTVAAGDALLSPSVTRRVIDRLVEQPVLRPSSDARLSE 160 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ EI + L + TV +++ KL +R+ A+ A G Sbjct: 161 LTPREQEVLLLMAQGLSNREIVDALAVEETTVKSHVRRVLSKLGVRDRVHAVILAYESGL 220 Query: 234 IC 235 + Sbjct: 221 VS 222 >gi|330954455|gb|EGH54715.1| regulatory protein, LuxR [Pseudomonas syringae Cit 7] Length = 240 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 64/182 (35%), Gaps = 14/182 (7%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + + E Y D + + + L + WQ + + + L Sbjct: 63 SSVDDAWGEAYRQHDLITQDPVIRCYRNQLGFLNWQDAFRQYPVSA---FYDELVDACEL 119 Query: 115 FAGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 I++ H G TS + + E ++ + + +R Sbjct: 120 LPAISYG--YTNHCRGADSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSR 177 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQ A DG T+ EI+ +S TV +L + KL NR QA+ A+ G Sbjct: 178 GLTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGGALCRG 237 Query: 233 YI 234 I Sbjct: 238 LI 239 >gi|321314554|ref|YP_004206841.1| two-component response regulator YfiJ [Bacillus subtilis BSn5] gi|320020828|gb|ADV95814.1| two-component response regulator (YfiJ) [Bacillus subtilis BSn5] Length = 220 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 14/123 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK-----------RSS 169 L +GY++ + V+ G ++ L +K+ + + Sbjct: 94 LEEGASGYLLKDMSADTIVKAVMTVHSGGMVLPPELTAQMLNEWKREKQLKGINEIEKPN 153 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LTERE L G G ++EIAEKL ++ TV ++ + KL +R QA ++ Sbjct: 154 ELLDLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSV 213 Query: 230 RFG 232 R+G Sbjct: 214 RYG 216 >gi|225869438|ref|YP_002745386.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] gi|225702714|emb|CAX00841.1| response regulator protein [Streptococcus equi subsp. zooepidemicus] Length = 199 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 10/127 (7%) Query: 112 LLPFAGIAFPV-R---LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 ++ +G P+ L ++ + L + V A G QVI D +L +K+ Sbjct: 79 MILISGFYEPLLHKRALDLGIKAFLPKECSYDELISTVYNVAKGN--QVIPD--DLLQKQ 134 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LTE E L+L D Y++E+I++KL +S TV+ ++ + KL+ +R+ A+ + Sbjct: 135 ENHL--LTESEIEILKLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVRE 192 Query: 228 AIRFGYI 234 AIR I Sbjct: 193 AIRLKLI 199 >gi|258652230|ref|YP_003201386.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258555455|gb|ACV78397.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 212 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCL 182 + +G+V + V G L R +LT RE+ L Sbjct: 89 MDAGCDGFVTKRQHIGEVLAAVTAVLRGDTPISPDMVGALIASRPRPPGGDLTPRESEVL 148 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QL G G ++++ A +LG+SVHTV ++ KL A ++++A+A A R G + Sbjct: 149 QLVGAGRSNQQTARELGISVHTVRNHVQHILDKLGAHSQLEAVAIASRLGLL 200 >gi|15896670|ref|NP_350019.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15026518|gb|AAK81359.1|AE007840_3 Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] Length = 217 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--ITDFLELFKKRSSAAR-----NLTE 176 L GY++ + L V G ++ L KK+ S ++TE Sbjct: 96 LSLGAKGYLLKDTTREELIRTVESAFRGELLLQPEVSKVLFNVKKKESTINTSFNASITE 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQ G S+EIA +G+S TV A+L + KL +R +A+AKAI G I Sbjct: 156 RELFILQSIARGCKSKEIAFDMGISERTVKAHLTNIYSKLQVSSRSEAVAKAIEKGII 213 >gi|302545491|ref|ZP_07297833.1| putative two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302463109|gb|EFL26202.1| putative two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 237 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLEL------FKKRSSA 170 L +G+++ + L + + A G ++I L L +A Sbjct: 109 LRAGASGFLVKDTRPTELLDAIRTVAAGESLLSPGPTARLIARVLRLPATPPPGTPSPAA 168 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ERE L L G + E A+ LGLS T ++ KL A +R Q + A Sbjct: 169 LSALSERERQVLALVARGLNNTEAAQALGLSPLTTKTHVSRIMGKLGARDRAQLVITAYE 228 Query: 231 FGYIC 235 G I Sbjct: 229 SGLIT 233 >gi|37521252|ref|NP_924629.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212248|dbj|BAC89624.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 210 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +++ + L + H ++ R S LT RE L Sbjct: 99 LRAGAMAFLLKEAPTEELVEAIRAV-HAGHKRIPQQVAAKLANRLSNPE-LTARELEVLH 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T++EIA L + TV A++ + K+ A +R QA AIR G + Sbjct: 157 LVVKGQTNKEIAASLFIGEGTVRAHMNNILAKMGAHDRTQAATLAIRRGLV 207 >gi|297195878|ref|ZP_06913276.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152976|gb|EFH32075.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 221 Score = 98.1 bits (243), Expect = 9e-19, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA--ARNLTER 177 +G+++ +E L V G ++I +F K + A LTER Sbjct: 99 GASGFLVKDTEPEELLRAVRAVVEGDALLSPGVTRRLIAEFAARSKGPAEAQGLGELTER 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L G G ++EEIA +L +S T ++ VKL A +R Q + A G + Sbjct: 159 EREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|332712354|ref|ZP_08432281.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] gi|332348828|gb|EGJ28441.1| two component transcriptional regulator, LuxR family [Lyngbya majuscula 3L] Length = 243 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 39/65 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LTERE L+L +G ++ IAE+L ++V TV ++ + KL A +R QA +A+ Sbjct: 178 EAYPLTERELEVLRLIVEGCSNALIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 237 Query: 230 RFGYI 234 R G + Sbjct: 238 RSGLV 242 >gi|322377555|ref|ZP_08052045.1| DNA-binding response regulator [Streptococcus sp. M334] gi|321281320|gb|EFX58330.1| DNA-binding response regulator [Streptococcus sp. M334] Length = 199 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERNIADLMKTLHTVLEGRKEY----SPELMEVVMTHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++++EIA+KL LS TV Y+ + KLDA NR +A A G++ Sbjct: 151 AQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|229489605|ref|ZP_04383468.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229323702|gb|EEN89460.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 230 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 10/119 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE----------AHGACYQVITDFLELFKKRSSAARNLT 175 +G+++ L + + A Q + LE + LT Sbjct: 102 AGASGFLLKDVPPEQLLDAIRTVHRGDAVIEARATRRLLQHVGPLLEGSAPEAQLPEELT 161 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G ++ EIA K +S TV ++G K + +R+QA+ A + G + Sbjct: 162 PREVEVLEAMAYGLSNSEIAAKFHVSETTVKTHVGRVLSKTHSRDRVQAVVFAFQIGLV 220 >gi|196228529|ref|ZP_03127396.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196227932|gb|EDY22435.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 209 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 4/115 (3%) Query: 122 VRLG--FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 + L GYV+ ++E + + G Y + LE + ++ RE Sbjct: 94 IHLAVRAGAAGYVLKSAERGEIIQAIRAVHGGKSY--FSPGLEALLHDRARKVEISPRER 151 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G ++EI + LG+S TV ++ KLDA +R A+ AI+ G I Sbjct: 152 EVLVRAAAGERNKEIGDHLGISEATVKVFMARIFQKLDARDRAHAVVIAIKRGII 206 >gi|116626901|ref|YP_829057.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116230063|gb|ABJ88772.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 224 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 10/120 (8%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK-------KRSSAARNL 174 NGY++ S L + G Y ++++ ++ F+ RS L Sbjct: 97 DMGANGYILKDSPADQLITAIREVQRGGSYLSPRLLSRLVDDFRLQGRGGGTRSPRFGTL 156 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L++ +G + +EIA LSV TV A+ + KLD N+ Q + AI+ I Sbjct: 157 TKREREILKMLAEGKSVKEIAAFFELSVKTVEAHKFNLMRKLDIHNKAQLVQYAIQKKII 216 >gi|302560744|ref|ZP_07313086.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302478362|gb|EFL41455.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 220 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN-LT 175 L +G+++ + L + + A G ++I FL +A L+ Sbjct: 97 LRAGASGFLVKDTRPAELLDAIRTVAAGDALLSPGPTARLIERFLRTPPAPVTAGPECLS 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +RE L L G + EIA+ LGLS T ++ +L A +R Q + A G + Sbjct: 157 DREREVLALVARGLNNTEIADSLGLSPLTAKTHVSRIMGRLGARDRAQLVIVAYESGLVA 216 >gi|149922133|ref|ZP_01910573.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] gi|149817070|gb|EDM76552.1| two component transcriptional regulator, LuxR family protein [Plesiocystis pacifica SIR-1] Length = 247 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 23/173 (13%) Query: 85 LPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN--------------- 129 LP + + E +V L L G+ P +A VR ++ Sbjct: 72 LPRLPAAADEASVQGEPPALVALLPDGVDPLPLLAVGVRALVARDAGTQRLRASVLAAEL 131 Query: 130 GYVIFTSEFLML------ANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSC 181 G V+ + E + + K +SA N LT RE Sbjct: 132 GLVVLDEDPSDALVASWSPGEEPEASPAPTPAPAKPEPRVANKPASAPENNLLTPREREV 191 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L DG ++ I E+LG+S HTV ++ + KLDA +R QA+ +AIR G + Sbjct: 192 LELLADGLSNRNIGERLGISAHTVKFHVDALLDKLDARSRTQAVVQAIRRGLL 244 >gi|15901823|ref|NP_346427.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|111656996|ref|ZP_01407802.1| hypothetical protein SpneT_02001776 [Streptococcus pneumoniae TIGR4] gi|148995258|ref|ZP_01824066.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|168490006|ref|ZP_02714205.1| DNA-binding response regulator [Streptococcus pneumoniae SP195] gi|5830548|emb|CAB54585.1| response regulator [Streptococcus pneumoniae] gi|14973509|gb|AAK76067.1| DNA-binding response regulator [Streptococcus pneumoniae TIGR4] gi|147926803|gb|EDK77860.1| DNA-binding response regulator [Streptococcus pneumoniae SP9-BS68] gi|183571627|gb|EDT92155.1| DNA-binding response regulator [Streptococcus pneumoniae SP195] gi|332072085|gb|EGI82572.1| response regulator [Streptococcus pneumoniae GA17570] Length = 199 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + LTE+E + L+ Sbjct: 95 AGVDAYVLKERNIADLMQTLHTVLEGRKEY----SPELMEVVMMHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++++EIA+KL LS TV Y+ + KLDA NR +A A G++ Sbjct: 151 AQGFSNQEIADKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|298243906|ref|ZP_06967713.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297556960|gb|EFH90824.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 266 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 9/118 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNLTER 177 GY++ ++ +A + ++ +F L SS LTE+ Sbjct: 136 GARGYILKSASAHEVAETIRTVYNEGLSIQPEMTRAIVGEFRRLADTTSSNQGTDLLTEK 195 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E ++ G +++EIAE+L S TV YL KL +R Q A+R G + Sbjct: 196 ELEIIRYVAAGLSNKEIAERLSYSEKTVKNYLSIIFQKLHLRDRTQVAIFALRQGLLT 253 >gi|256396944|ref|YP_003118508.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363170|gb|ACU76667.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 231 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 24/135 (17%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK----------- 165 L +G+++ S L + + G A ++IT+F+ + Sbjct: 94 LLAGASGFLLKDSPPADLVTAIEVIRSGEALLTPAATRRLITEFVRSRRTPNRATATAAT 153 Query: 166 ------KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 A LT RE L L G ++ EI+ +L +S+ TV ++ + KL A Sbjct: 154 TANAIAPPDPALDGLTAREREVLTLVARGKSNTEISTELFVSMSTVKTHMSALLAKLGAR 213 Query: 220 NRIQAIAKAIRFGYI 234 +R Q + +A G + Sbjct: 214 DRAQLVIRAYEGGLV 228 >gi|116672689|ref|YP_833622.1| two component LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116612798|gb|ABK05522.1| two component transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 218 Score = 98.1 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 43/109 (39%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + + V+ A G L + + L+ RE LQL Sbjct: 107 AGASGYMLKDAPPEHIRQAVLSAAAGGTALAPEVAARLVGRIRNPEPALSAREIQLLQLL 166 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + IA +L +S TV +L KL NR AI+ A + I Sbjct: 167 ATGLPNRAIARRLFISEATVKTHLVHIYGKLGVDNRTAAISVATQRRII 215 >gi|317490641|ref|ZP_07949111.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325831510|ref|ZP_08164764.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1] gi|316910265|gb|EFV31904.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325486764|gb|EGC89212.1| oxygen regulatory protein NreC [Eggerthella sp. HGA1] Length = 214 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 7/119 (5%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLT 175 L GYV+ S L V A G Y + + ++ + + L+ Sbjct: 94 TLRGGAAGYVLKNSTSEELIAAVHAVAEGGSYIHPKMTAMLTKQLVAGGEEEDRSYQQLS 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQL G+T++EI+E++ LSV TV A+ KL R + A+R + Sbjct: 154 NRELEILQLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKTRADLVDYALRHKLL 212 >gi|325677563|ref|ZP_08157226.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] gi|325551634|gb|EGD21333.1| DNA-binding response regulator [Rhodococcus equi ATCC 33707] Length = 206 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 44/108 (40%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ S + + G + + + LT RE L Sbjct: 95 LDAGAIGYLLKDSAPQDIFGAIRDAVAGRSVLSPPVASRVLDRMRRPDQALTAREAELLS 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L +G T++E+ ++L +S TV +L KL +R A++ A+R Sbjct: 155 LLAEGLTNKELGKRLFISEATVKTHLAHIYAKLGVDSRAAAVSIALRR 202 >gi|302536696|ref|ZP_07289038.1| two-component system response regulator [Streptomyces sp. C] gi|302445591|gb|EFL17407.1| two-component system response regulator [Streptomyces sp. C] Length = 208 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + +++ + LA+ V G Q + D + A LT+RE L+ A Sbjct: 103 AGASAFLVKDAPAAQLADAVRKVLAG---QRVIDPTLAAAALAEGANPLTDREREVLRAA 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ E+A +LGLS TV YL +A KL A NR +A+ A G++ Sbjct: 160 EFGATNAELASRLGLSQGTVRNYLSTAIQKLAARNRAEAVRVAREKGWL 208 >gi|71068215|gb|AAZ23070.1| possible response regulator [Streptomyces fradiae] Length = 241 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 16/128 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----------- 172 L +G+++ LA V + G + L ++ +S AR Sbjct: 100 LAAGASGFLLKDVTPAHLAAAVRLVGTGDALLAPSITRRLVERFTSGARGTGTGAATPAV 159 Query: 173 -----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L L G G ++ E+A +L LS TV ++ KL +R QA+ Sbjct: 160 HRDLAALTPREREVLTLMGRGLSNAELARELTLSEATVKTHVSRIFAKLALRDRAQAVVL 219 Query: 228 AIRFGYIC 235 A G + Sbjct: 220 AYETGLVS 227 >gi|312137639|ref|YP_004004975.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311886978|emb|CBH46287.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 206 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 44/108 (40%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ S + + G + + + LT RE L Sbjct: 95 LDAGAIGYLLKDSAPPDIFGAIRDAVAGRSVLSPPVASRVLDRMRRPDQALTAREAELLS 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L +G T++E+ ++L +S TV +L KL +R A++ A+R Sbjct: 155 LLAEGLTNKELGKRLFISEATVKTHLAHIYAKLGVDSRAAAVSIALRR 202 >gi|256421144|ref|YP_003121797.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256036052|gb|ACU59596.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 210 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTER 177 L GYV+ + L + + Y + D+ S + L+ER Sbjct: 94 LEKGAQGYVLKDASKAELVQAINNASERKNYFHPKINDQVFDYFRGKSVGKSGLQELSER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E ++ +G ++ I+ L +S HTV + + KL+ + I AI G I Sbjct: 154 EKEIIKCLAEGMNTKAISSSLYISEHTVKTHRRNIMHKLNVKTSAELIRLAIDKGII 210 >gi|329928337|ref|ZP_08282208.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328937894|gb|EGG34299.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 599 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDF------LELFKKRSSA 170 + +GY++ + + L LA + G +++ + + S+ Sbjct: 475 MRSGVDGYLLKSMQPLELAETIRTVHRGGTLIDQGMSHKLFAQLEADNGGDDPSSIKVSS 534 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A +LT RE LQ +G + IA KL LS TV Y S +KL NR +A+ KA Sbjct: 535 AYDLTPRELEILQFVSEGLRYKSIASKLYLSDGTVRNYASSVYMKLGVRNREEAVQKARE 594 Query: 231 FGYI 234 G + Sbjct: 595 AGLL 598 >gi|317125624|ref|YP_004099736.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315589712|gb|ADU49009.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 237 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 15/124 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA----------- 171 NGY++ +A + HG + + L+ F + S Sbjct: 110 AGANGYLLKDVPPEEVAAGIRGVFHGQSLISPMMASKLLQEFAQMSRHEGTVPAATPELE 169 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L+L G + EIA +L +S +TV ++ + KL +R++A A+R Sbjct: 170 LPRLTERELGILRLVARGRLNREIARELFISENTVRNHIRNILDKLQMHSRMEAAMYAVR 229 Query: 231 FGYI 234 I Sbjct: 230 KRLI 233 >gi|299135525|ref|ZP_07028709.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298601649|gb|EFI57803.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 207 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ LA + H V + S+ L+ERE LQ Sbjct: 100 LDAGARGYLLKERPASELAEAIRRV-HAGLRAVDPALAA--EAWSADEDPLSERERRILQ 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AGDG +S EIA +L LS TV YL A KL A NR+ A A G++ Sbjct: 157 RAGDGRSSAEIAAELRLSEGTVRNYLSEAIAKLGAANRVDAARIARARGWL 207 >gi|16077897|ref|NP_388711.1| two-component response regulator YfiJ [Bacillus subtilis subsp. subtilis str. 168] gi|221308666|ref|ZP_03590513.1| hypothetical protein Bsubs1_04608 [Bacillus subtilis subsp. subtilis str. 168] gi|221312990|ref|ZP_03594795.1| hypothetical protein BsubsN3_04559 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317916|ref|ZP_03599210.1| hypothetical protein BsubsJ_04503 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322189|ref|ZP_03603483.1| hypothetical protein BsubsS_04599 [Bacillus subtilis subsp. subtilis str. SMY] gi|81818210|sp|P94439|YFIK_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yfiK gi|1817535|dbj|BAA11401.1| YfiK [Bacillus subtilis] gi|2633154|emb|CAB12659.1| two-component response regulator [YfiJ] [Bacillus subtilis subsp. subtilis str. 168] Length = 220 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 14/123 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK-----------RSS 169 L +GY++ + V+ G ++ L +K+ + + Sbjct: 94 LEEGASGYLLKDMSADTIVKAVMTVHSGGMVLPPELTAQMLNEWKREKQLKGINEIEKPN 153 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LTERE L G G ++EIAEKL ++ TV ++ + KL +R QA ++ Sbjct: 154 ELLDLTEREIEVLAELGYGLNNKEIAEKLYITEGTVKNHVSNIISKLAVRDRTQAAIYSV 213 Query: 230 RFG 232 R+G Sbjct: 214 RYG 216 >gi|152984552|ref|YP_001346614.1| transcriptional regulator NarL [Pseudomonas aeruginosa PA7] gi|150959710|gb|ABR81735.1| two-component response regulator NarL [Pseudomonas aeruginosa PA7] Length = 219 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--KRSSAARNLTERE 178 L +GY++ E L + A G Q+ + + RS + LTERE Sbjct: 104 LRAGADGYLLKDMEPERLLEHIRQAATGQMTLSPQLTQILAQALRGDDRSKSLDELTERE 163 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ GY+++ IA KL ++ TV ++ KL +R++A A+ + Sbjct: 164 RQILRQIAHGYSNKMIARKLDITEGTVKVHVKRVLHKLGMRSRVEAAVWAVENDLV 219 >gi|228477748|ref|ZP_04062377.1| DNA-binding response regulator [Streptococcus salivarius SK126] gi|228250637|gb|EEK09848.1| DNA-binding response regulator [Streptococcus salivarius SK126] Length = 200 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L H + YV+ L + G EL + + L++RE L Sbjct: 93 LAAHVDAYVLKERSISDLMATIHTVLAGQKEY----SPELVEGVAFDNNPLSQREQEVLA 148 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T++EIAE L LS TV Y+ + KLDA NR +A+ A ++ Sbjct: 149 MVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIAKEKDWL 199 >gi|297191605|ref|ZP_06909003.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719345|gb|EDY63253.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 224 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 45/122 (36%), Gaps = 9/122 (7%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN--- 173 FP L GY+ ++ + + G V LE Sbjct: 95 FPA-LRAGARGYLTKDADGDEIVRAIQDVVAGRAGLSPVVQRRLLEQVTAEPPPTGPRLP 153 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L L +G + +IA +LG+S TV ++ + K +R QA+ A R Sbjct: 154 DGLTAREGEVLTLIAEGLGNTDIAARLGISTATVKTHINNLFAKAGLHDRAQAVRYAYRE 213 Query: 232 GY 233 G Sbjct: 214 GL 215 >gi|159898124|ref|YP_001544371.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891163|gb|ABX04243.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 207 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 2/113 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS--SAARNLTERETSC 181 L GY++ + + + G + K+ + A L++RE Sbjct: 94 LNAGAAGYLLKDASPEEVFRAIRSIYEGGAALQSGIAARVLKRLATEPAEDELSQRELDV 153 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQL G +++ IA L +S +T+ +++ KLD +R +A+A A++ G + Sbjct: 154 LQLLVRGESNKAIALSLNISENTIKSHVSHIFSKLDVRSRAEAVAVALQRGLV 206 >gi|2765450|emb|CAA75536.1| nitrate/nitrite regulatory protein [Pseudomonas aeruginosa PAO1] Length = 216 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--KRSSAARNLTERE 178 L +GY++ E L + A G Q+ + + RS + LTERE Sbjct: 101 LRAGADGYLLKDMEPERLLEHIRQAATGQMTLSPQLTQILAQALRGDDRSKSLDELTERE 160 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ GY+++ IA KL ++ TV ++ KL +R++A A+ + Sbjct: 161 RQILRQIAHGYSNKMIARKLDITEGTVKVHVKRVLHKLGMRSRVEAAVWAVENDLV 216 >gi|325965270|ref|YP_004243176.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] gi|323471357|gb|ADX75042.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein [Arthrobacter phenanthrenivorans Sphe3] Length = 230 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 14/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKK------RSSAARN- 173 L + +++ L V + A G +V LE + + R + A + Sbjct: 99 LQAGASAFLLKDVAPSELIQAVRVVASGDAVVAPRVTQRLLETYVRGAELPVRPAPAPDP 158 Query: 174 ----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RET L+ +G ++ EIA + LS TV ++ KL +R+QA+ A Sbjct: 159 LLADLTPRETEMLEAMAEGLSNAEIAHRYFLSEATVKTHVRRILTKLHLRDRVQAVVYAY 218 Query: 230 RFGYIC 235 G + Sbjct: 219 ETGLVV 224 >gi|301155137|emb|CBW14601.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Haemophilus parainfluenzae T3T1] Length = 219 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E +L ++ A G I + L K +LT+RE L Sbjct: 108 DSGADGYLLKDTEPDVLLEQIKRIAQGEVILSDSIKNLLLERKHTVDPMDSLTDREMDVL 167 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +L G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 168 RLIATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATV 211 >gi|255598987|ref|XP_002537125.1| conserved hypothetical protein [Ricinus communis] gi|223517394|gb|EEF25258.1| conserved hypothetical protein [Ricinus communis] Length = 277 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 37/70 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R+ + L++RE L+ G T+ EI + +S T+ ++ + KLD NR QA Sbjct: 205 ARNGRIKPLSKRELEVLEWLQAGKTNWEIGNIMQVSPLTIKNHVQNILRKLDVENRSQAA 264 Query: 226 AKAIRFGYIC 235 +KA++ G I Sbjct: 265 SKALKLGLIT 274 >gi|94972309|ref|YP_594349.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554360|gb|ABF44275.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 209 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 2/113 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTERETSC 181 L + Y + ++ +L V A G+ Y + + + A LT RE Sbjct: 97 LASGADAYCLKSARPDLLLLAVRAAAAGSAYLDPQVAHHVLGGVRAPDAGAPLTPRELDV 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L DG ++EIA L +SV TV ++ VKL A +R QA KA+R G + Sbjct: 157 LRLIADGLANKEIAAALEISVSTVKLHVQEILVKLQAADRTQAAVKALRAGLL 209 >gi|311896597|dbj|BAJ29005.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 224 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 15/125 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA------- 171 +G+++ L + V + G +VI + ++A Sbjct: 93 AGASGFLLKDVRRDDLVHAVRVVDSGEALLAPSVTRRVIGEVTARKAAGAAAVPRPLGRL 152 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L+L G ++ EIA +L +S HTV ++ + KL +R+ A+ A Sbjct: 153 LESLTGREAETLKLVARGMSNAEIAAELVVSEHTVKTHVSNLLQKLGLRDRVHAVVFAYE 212 Query: 231 FGYIC 235 G + Sbjct: 213 AGAVT 217 >gi|271965453|ref|YP_003339649.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508628|gb|ACZ86906.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 233 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--------LT 175 L G+++ E + + V A G + + ++ +A LT Sbjct: 94 LRAGAIGFLVKDDEPERMVDAVRRAAAGEPLLAPSVLRRVVERALAAEEQAAVQVPAGLT 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L L G G ++ EIA+ L + V TV ++ +A KL NR QA A R G + Sbjct: 154 DRELEVLALVGVGLSNAEIADALHVGVTTVKTHVSTAMDKLGLRNRTQAAVVAHRIGLV 212 >gi|319653424|ref|ZP_08007524.1| response regulator [Bacillus sp. 2_A_57_CT2] gi|317394908|gb|EFV75646.1| response regulator [Bacillus sp. 2_A_57_CT2] Length = 210 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSS--AARNLTERE 178 L Y++ TS+ +A V HG +V + ++++ LT RE Sbjct: 94 LEAGATSYMLKTSKASEIAEAVRSTYHGQSVLEPEVTGKMMVKMRQKNHQLPHEELTSRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T+++IA++L +++ TV ++ + KL +R QA+ A + + Sbjct: 154 MEILLLMTQGKTNQDIADELFIALKTVKTHVSNILSKLQVQDRTQAVIYAFKHSLV 209 >gi|257069626|ref|YP_003155881.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256560444|gb|ACU86291.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 222 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLEL----FKKRSSAAR 172 L +G+++ + LA V + A G ++++ F E + R Sbjct: 94 LEAGASGFLLKDTPPQELARAVHVVAGGDAMLSPTITRRMLSHFSEANPGSRQDRHPGLE 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RET L G G ++ +I +L +S TV A++ KLD NR+Q A G Sbjct: 154 QLTDRETEVLGAVGAGLSNAQIGMRLFMSEATVKAHVSKIFAKLDCTNRVQIAIIAHEAG 213 Query: 233 Y 233 Sbjct: 214 L 214 >gi|297197789|ref|ZP_06915186.1| two component system response regulator [Streptomyces sviceus ATCC 29083] gi|197716622|gb|EDY60656.1| two component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSS--AARNLTER 177 +G+++ +E L V G ++I +F K+ + A LTER Sbjct: 99 GASGFLVKDTEPEELLRAVRAVVDGDALLSPGVTRRLIAEFAARSKEPEAEGALAGLTER 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L G G ++EEIA +L +S T ++ VKL A +R Q + A G + Sbjct: 159 EREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|108762123|ref|YP_628591.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108466003|gb|ABF91188.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK 1622] Length = 209 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 6/107 (5%) Query: 135 TSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +E L ++ A G A ++ +++A LT RE L L +G Sbjct: 102 DAEPSALVAALLSVARGLTVFDPALAELRATPRASLPAQATAPDALTPREREVLGLLAEG 161 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +++ IA++L +S HT ++ + KL R +A+ +A + G + Sbjct: 162 LSNKAIADRLDISEHTAKFHVNAVLAKLGVQRRTEAVVRAAKLGLVT 208 >gi|326317305|ref|YP_004234977.1| LuxR family transcriptional regulator [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374141|gb|ADX46410.1| transcriptional regulator, LuxR family [Acidovorax avenae subsp. avenae ATCC 19860] Length = 264 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 84/198 (42%), Gaps = 22/198 (11%) Query: 59 LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQE-----ETVIESSGQLSV 106 L+ ++P + + + D G W Q+ + +++ + Sbjct: 59 LEYRNMPGPMRKLWVEQGMYQVDPVQALALRGSGAFFWSYHQDEESVLQPMLDGGARSVS 118 Query: 107 RLEGGLLPFAGIAFPVRLGFHKNGYVI-------FTSEFLMLANEVIIEAHGACYQVITD 159 + G+ P+ + ++ + F + + L + V+ A+ A + + Sbjct: 119 SVLTEWRMTRGVTVPLHMPGNRFATLTAMWQDDNFAQKKMSLVDSVMRLAYMA-HILNDH 177 Query: 160 FLELFKKRSSAARN--LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 L++F K R+ L++RE C+ LA +G S++IA +L + T+ +L SA KL Sbjct: 178 LLKVFTKIQLTPRDVALSDREHECVLLAAEGMPSKQIAARLNRAESTIVFHLQSAARKLG 237 Query: 218 AVNRIQAIAKAIRFGYIC 235 NR Q IA+A FGY+ Sbjct: 238 GRNRAQMIARAAHFGYLS 255 >gi|157151124|ref|YP_001451003.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] gi|157075918|gb|ABV10601.1| DNA-binding response regulator [Streptococcus gordonii str. Challis substr. CH1] Length = 199 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + ++ L+++E LQ A Sbjct: 95 ADVDAYVLKERSIADLMKTIHTVLDGQKEY----SPELMEVLMTSRNPLSQQERLVLQAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +++EIAEKL LS TV Y+ + KLDA NR +A+ G++ Sbjct: 151 ADGLSNKEIAEKLFLSNGTVRNYMSAILTKLDAENRTEAVRIGQEKGWL 199 >gi|315647681|ref|ZP_07900782.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315276327|gb|EFU39670.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 201 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + G LF K L+ERE L+L Sbjct: 96 AQVEGYLLKDEPIDFLIEAIRRIMKGERVVSTDLAAALFMK---GENPLSEREIEMLRLT 152 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI++ L L+ TV YL SA KL+A +R QA A A G++ Sbjct: 153 KEGMTTGEISKALFLTTGTVRNYLSSAIQKLEADSRQQAAAIAEDKGWL 201 >gi|311898779|dbj|BAJ31187.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 234 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 51/133 (38%), Gaps = 23/133 (17%) Query: 124 LGFHKNGYVIFTSEFLMLAN---EVIIEAHGACYQVITDFLELFK--------------- 165 L G++ + +A +V A G QV LE Sbjct: 98 LQAGARGFLTKDAGAEEIARAVADVRSGAAGLSPQVQLRLLERLAGPAAAPEPAPVATEA 157 Query: 166 -----KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 +R S LT+RE L L G ++ EIAE+L +S TV ++ + K + Sbjct: 158 APEAVRRPSLPDGLTQREAEVLALIAAGLSNAEIAERLFVSPATVKTHINNLFAKTAVRD 217 Query: 221 RIQAIAKAIRFGY 233 R QA+A A R G Sbjct: 218 RAQAVAYAFRHGI 230 >gi|302532669|ref|ZP_07285011.1| two component system response regulator [Streptomyces sp. C] gi|302441564|gb|EFL13380.1| two component system response regulator [Streptomyces sp. C] Length = 191 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA--RNLTE 176 +G+++ +E L V G ++I +F ++ + A LT+ Sbjct: 68 AGASGFLVKDTEPEELLRAVRAVVEGDALLSPGVTRRLIAEFAARSRRPAPAEGLERLTD 127 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + L G G ++EEIA +L +S T ++ VKL A +R Q + A G + Sbjct: 128 REREVMALVGTGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYETGLV 185 >gi|190890349|ref|YP_001976891.1| transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] gi|190695628|gb|ACE89713.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CIAT 652] Length = 248 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 55/230 (23%), Positives = 86/230 (37%), Gaps = 26/230 (11%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTIN----SALDFPRRQQLICELHNYDLDS-GDIP 65 +S L L + + A ++ L + S LDF ++ D DI Sbjct: 39 VASTGRLQSGLRALTEYVGASHYLLARCDLIQESGLDF-------VVSSDWPFDLVKDIA 91 Query: 66 NILIETYGDDF-LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL 124 N L+ Y L P + E + EG + + F + Sbjct: 92 NDLVSGYARSTELEKCMQVFQPNF-ALLPESAAVP---------EGASRQYCSLTF--NV 139 Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G + + E +L+ E + + G + FL R LT+RE CL Sbjct: 140 GRSRLALMFLFGEGFILSPERLRDV-GLLAGYVASFLRCGGARVDRDFELTDRELECLFW 198 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 199 IAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248 >gi|218246750|ref|YP_002372121.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257059792|ref|YP_003137680.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218167228|gb|ACK65965.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256589958|gb|ACV00845.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 221 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 11/118 (9%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSA--------ARN 173 NGY + E L + A GA + T+ F K+ + Sbjct: 100 AIGVNGYCLKGIEAEHLILALRSVAVGASWWDQTGTTEIQAAFSKKPTINCDIIEGIDNP 159 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L G T++EIA+ L ++ TV ++ + KLD +R QA A++ Sbjct: 160 LTQREQEILALIALGKTNQEIAQTLSIATGTVRVHVHAILQKLDVRDRTQAAIIALQH 217 >gi|251795142|ref|YP_003009873.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247542768|gb|ACS99786.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 230 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-----NLTER 177 Y++ T+ +A+ + A G QV + +K + +LTER Sbjct: 113 AGAFSYLLKTARATEIADAIRAAARGQSVLESQVAAKMMNRLRKPKQPVQAALHDDLTER 172 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L+ G +++EIA++L + V TV ++ + KLD +R QA A + G Sbjct: 173 EMDVLKRVAQGMSNQEIADELFIGVKTVKFHITNIFNKLDVEDRTQAAIYAHKQGI 228 >gi|330876121|gb|EGH10270.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 240 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 76/228 (33%), Gaps = 15/228 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + L ++ + Y + L N D G Sbjct: 24 ELDGQTAIEKALQWLRRECDSERAMFYQFKGPM------LLTFITSNVDDAWGQAYRQHE 77 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHK 128 D + + + L + WQ ++ + + +V L + G H Sbjct: 78 LITQDPVIRCYRNQLGFLNWQDAFKQYPASACYEEAVDACELLPAISYGYT------SHC 131 Query: 129 NGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G TS + + E ++ + + ++R LT RE LQ A Sbjct: 132 RGTESVTSVCTLSEVERTISAEQKYLVSSLMPVLHSVARGLKFSSRGLTLRELEVLQWAR 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 192 DGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|302549505|ref|ZP_07301847.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467123|gb|EFL30216.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 219 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK-RSSAARNLT 175 LG +GYV+ + L G A ++ DFL+ ++ R+ +R +T Sbjct: 99 LGAGASGYVLKSVADRDLVEACRATMRGEPFLYPGAVNALVRDFLDRAREGRALPSRAIT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L +G+TS++IA+ L +S TV + + KL +R++ AIR G I Sbjct: 159 DREEEILKLVAEGHTSQQIADLLVISPKTVERHRANLLQKLGLKDRLELTRYAIRVGLI 217 >gi|291298070|ref|YP_003509348.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290567290|gb|ADD40255.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 221 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNL-- 174 L +G+++ S L V A G A ++++ F L + + L Sbjct: 97 LRAGASGFLLKDSHAATLIAAVHTVASGNAVLSPWATSRLVSTFAPLLPEPLATPPRLKA 156 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L L G G ++ EIA +LG+ TV ++L S KL +R+ A+ A G Sbjct: 157 LTARERDVLSLTGRGLSNNEIATELGIGYETVKSHLRSVMTKLRLRDRVHAVIVAYETGL 216 Query: 234 I 234 + Sbjct: 217 L 217 >gi|226357105|ref|YP_002786845.1| response regulator NarL [Deinococcus deserti VCD115] Length = 216 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSA-ARNLTER 177 GY++ ++ L + + A G V+ DF + ++ S +L ER Sbjct: 97 AGARGYILKDADAATLIDAITRVAAGEALLDADMAQNVLDDFRDKREELPSEKHADLNER 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ET L+L G+++++IA +L +S TV L KL NR QA AIR G Sbjct: 157 ETMILKLLAQGFSNQDIALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 212 >gi|333025294|ref|ZP_08453358.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332745146|gb|EGJ75587.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 205 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L +G+++ L + G +++ F + A Sbjct: 76 LRAGASGFMLKDVPPSELVAAIRAVHSGDAVVAPSTTRRLLDRFAPMLPGTGPATHPELD 135 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE ++L G ++ EIA +L LS TV ++G KL +R+Q + A G Sbjct: 136 RLTGREQEVMRLVAQGLSNGEIAARLVLSEATVKTHVGRVLTKLGLRDRVQVVVLAYETG 195 Query: 233 YI 234 + Sbjct: 196 IV 197 >gi|304398340|ref|ZP_07380214.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] gi|304354206|gb|EFM18579.1| two component transcriptional regulator, LuxR family [Pantoea sp. aB] Length = 209 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE +L ++ + G + + +L+ + + R LT+RE L Sbjct: 99 DAGADGYLLKDSEPEILLGHILQASRGEKVFSEGVASYLDNRQHSADPLRLLTDRECDVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G +++EIA L +S TV ++ + KLD +R+ A Sbjct: 159 QEVARGLSNKEIAAILHISEETVKVHIRNLLRKLDVRSRVAATV 202 >gi|209527179|ref|ZP_03275692.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] gi|209492428|gb|EDZ92770.1| two component transcriptional regulator, LuxR family [Arthrospira maxima CS-328] Length = 208 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKR--SSAARNLTERE 178 L + Y + L + GA Y QV +E K S L+ RE Sbjct: 93 LSSGADAYCVKGGSVDSLIVAIQAAYEGATYLDPQVARLVMEHLKPPLPQSNLGTLSPRE 152 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G ++ EIAE L LS +T+ ++ KL +R+ A+R G + Sbjct: 153 LEVLKLMVEGKSNPEIAEALYLSPNTIKTHVRGIMNKLAVDDRVMVAVVALRSGLV 208 >gi|209547914|ref|YP_002279831.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533670|gb|ACI53605.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 248 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 50/232 (21%), Positives = 86/232 (37%), Gaps = 21/232 (9%) Query: 16 ELSPRLHLIQNRIKARNFALY---------TINSALDFPRRQQLICELHNYDLDSGDIPN 66 +L PR L+Q N + ++ R L+ E + S D P Sbjct: 25 DLLPRDQLLQRLHGVANTGRLQSGLRALTEYVGASHYLLARCDLLQESGLDFIVSSDWPF 84 Query: 67 ILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGI----AFPV 122 L+ +D + + E+ + ++ + +P + Sbjct: 85 DLVRDIANDLVRGYARSTE-------LEKCMQVFQPNFALMPDSADVPDGASRQYCSVTF 137 Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 +G + + E +L+ E + + G + FL R LT+RE CL Sbjct: 138 NVGRSRLALMFLFGEGFILSPERLRDV-GLLAGYVASFLRCGGTRVDRDFELTDRELECL 196 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 197 FWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248 >gi|158338160|ref|YP_001519337.1| two component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158308401|gb|ABW30018.1| two component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 238 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 37/66 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE L+L G ++ IA+KL +SV TV ++ S KL A +R QA +A+ Sbjct: 173 ETEPLTDRELEVLELIVAGCSNAVIADKLYISVGTVKTHVRSILNKLCADDRTQAAVRAL 232 Query: 230 RFGYIC 235 R G + Sbjct: 233 RSGLVT 238 >gi|288924067|ref|ZP_06418126.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288344590|gb|EFC79060.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 171 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 6/108 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKK---RSSAARNLTERET 179 GYV+ L + A G V LE + A L +RE Sbjct: 57 AGAAGYVLKEIRGNDLVGAIRTVASGQSLLAPSVTRRVLERLRDGPHEDPAMATLNQRER 116 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LQL DG T+ +I +LGLS TV Y+ S KL +R QA Sbjct: 117 EILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVY 164 >gi|269217647|ref|ZP_06161501.1| nitrate/nitrite response regulator protein NarL [Actinomyces sp. oral taxon 848 str. F0332] gi|269212582|gb|EEZ78922.1| nitrate/nitrite response regulator protein NarL [Actinomyces sp. oral taxon 848 str. F0332] Length = 212 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA------CYQVITDFLELFKKRSSAARNLTERET 179 +GYV+ E LA + A G + +T + L+E+E Sbjct: 96 AGASGYVLKDIEPFRLAEAIRATASGRTVLDERAARAVTQSVRGGSSADGGVEELSEQEK 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LA +G T+ +IA LG+ TV Y A KLD V+R A+ +A+R G I Sbjct: 156 RVLALAAEGMTNRQIATALGVGAATVKTYFSRAFAKLDVVDRTSAVVEAMRRGEI 210 >gi|85858979|ref|YP_461181.1| two-component response regulator [Syntrophus aciditrophicus SB] gi|85722070|gb|ABC77013.1| two-component response regulator [Syntrophus aciditrophicus SB] Length = 217 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN-LT 175 L +GY++ F L N + Y V+ +++ S + LT Sbjct: 95 LEAGASGYLLKDCAFEELVNAIQTVLSNHTYLSPTIADIVVKNYVHKAAGTSVVVSSELT 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE LQL +G ++++IA L +SV TV + + T KL + + I AIR G Sbjct: 155 PRERELLQLLAEGLSAKQIAANLHVSVKTVETHRRNITQKLGVGSVAELIKYAIREGL 212 >gi|21220639|ref|NP_626418.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|256788218|ref|ZP_05526649.1| two component system response regulator [Streptomyces lividans TK24] gi|289772111|ref|ZP_06531489.1| two component system response regulator [Streptomyces lividans TK24] gi|5578847|emb|CAB51249.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] gi|289702310|gb|EFD69739.1| two component system response regulator [Streptomyces lividans TK24] Length = 227 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 15/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFL--------ELFKKRS 168 L +G++ SE L + + + A G +I FL + R+ Sbjct: 97 LRAGASGFLGKGSEPEELLSAIRVAAGGEALLSPTATKGLIARFLAQQDTTDEDRDPARA 156 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE L G++++EIAE+L +S TV ++ A KL A +R Q + A Sbjct: 157 ERLESLTVREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVIA 216 Query: 229 IRFGYI 234 G + Sbjct: 217 YESGLV 222 >gi|301059676|ref|ZP_07200584.1| putative Oxygen regulatory protein NreC [delta proteobacterium NaphS2] gi|300446242|gb|EFK10099.1| putative Oxygen regulatory protein NreC [delta proteobacterium NaphS2] Length = 219 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 9/119 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFK--KRSSAARNLTE 176 +GY + +S L + V G + +V+ +LE + K S +LT+ Sbjct: 100 AGVDGYCLKSSGQDELMSAVNAVLSGKRFISPEISDKVLEGYLEANRTLKEQSDWDSLTQ 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L +GY ++EIAE L +S TV + + K D + A AI G + Sbjct: 160 REREVLKLVAEGYQNKEIAEYLFISPKTVEKHRANIMRKTDLHSASSLTAYAIEKGLLT 218 >gi|269957384|ref|YP_003327173.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306065|gb|ACZ31615.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 234 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 16/124 (12%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----------------KRSSA 170 +G+++ + + + G + L + +A Sbjct: 107 GASGFMLKDAPPEEMLGAIRTVHAGDAVIAPSSTRRLLEHLVTALPTPAPDTPPSPAHAA 166 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE L+L G ++ EIA L ++ TV ++G KLDA +R+QA+ A Sbjct: 167 LATLTDREREVLELMARGRSNTEIAADLFVAEATVKTHVGRILAKLDARDRVQAVVLAYE 226 Query: 231 FGYI 234 G + Sbjct: 227 TGVV 230 >gi|326381697|ref|ZP_08203391.1| putative two component system response regulator [Gordonia neofelifaecis NRRL B-59395] gi|326199944|gb|EGD57124.1| putative two component system response regulator [Gordonia neofelifaecis NRRL B-59395] Length = 213 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 7/113 (6%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-------AARNLTERETSC 181 +G+V+ ++ L V A G+ + +LF++ S LT RE Sbjct: 101 SGFVLKDAQPEFLLASVRAVADGSQVVAASATRQLFERHGSRNADPGPEYDTLTAREREI 160 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L A G ++ EIA LS TV ++ KL +R+Q + A G + Sbjct: 161 LVRAASGLSNAEIASAEFLSEATVKTHVSRILAKLSLRDRVQLVVYAYEHGLV 213 >gi|300716150|ref|YP_003740953.1| regulatory protein [Erwinia billingiae Eb661] gi|299061986|emb|CAX59102.1| Regulatory protein [Erwinia billingiae Eb661] Length = 240 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 78/234 (33%), Gaps = 24/234 (10%) Query: 13 SLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY 72 ++ ++S LI+ + A F Y + P + I P + Y Sbjct: 19 NVSDISEITALIEQQTLALGFDFYALYIRHPVPFTRPKI-------FIYSSYPKKWVSAY 71 Query: 73 G-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 D + + ++W + GQ +G + Sbjct: 72 QKGNFAAIDPVIENCQVPGKIVLWDE-----PLSRRGQKVFDAAKEYGIHSGFSACAMAK 126 Query: 126 FHKNGYVIFTS----EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETS 180 G + S E +ML E ++ ++ ++ S L++RE Sbjct: 127 NRSIGILSMASGKTFEKIMLTPEKQLKLQYLSVLIMEALQQVKDISMSVMNMELSQRELE 186 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G TS EI+ L +S +TVN + + +A N+ Q + A G + Sbjct: 187 ILKWTAEGKTSAEISLILSISENTVNFHQKKMQKRFNAPNKTQVASYAAAIGLL 240 >gi|306825879|ref|ZP_07459218.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432240|gb|EFM35217.1| DNA-binding response regulator [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 199 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEVVMTHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS TV Y+ + KL+A NR +A A G++ Sbjct: 151 AQGLSNQEIADQLYLSNGTVRNYVTNILSKLNAGNRTEAANIAKESGWL 199 >gi|228908960|ref|ZP_04072790.1| Two-component protein Kinase [Bacillus thuringiensis IBL 200] gi|228850682|gb|EEM95506.1| Two-component protein Kinase [Bacillus thuringiensis IBL 200] Length = 451 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSS--AARNL 174 L +G+++ + E L LAN + + G +++ F E + S A L Sbjct: 331 LRNGADGFLLKSIETLELANTIRLIHKGGTLIDQGMSHKIFEKFDEQKETPQSKATAYEL 390 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LQL G IA +L LS TV Y +A KL N+ +A+ KA+ G I Sbjct: 391 TAREIEILQLVAKGLRYTTIASRLYLSNGTVRNYASTAYTKLGVCNKEEAVQKALEIGII 450 >gi|300791111|ref|YP_003771402.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800625|gb|ADJ51000.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 222 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 12/120 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRS-----SAARN 173 +GY++ ++ + L + V A G V+ ++ + S + Sbjct: 100 AGASGYLVKSASAVELVDAVHRTAAGDPVFTAGLAGLVLGEYRRMADASSEDAAGAEPPR 159 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L+L G T+ +IAE+L LS TV ++ S KL NR++ AI G Sbjct: 160 LTERETDVLRLVAKGLTARQIAERLVLSHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 219 >gi|296134303|ref|YP_003641550.1| two component transcriptional regulator, LuxR family [Thermincola sp. JR] gi|296032881|gb|ADG83649.1| two component transcriptional regulator, LuxR family [Thermincola potens JR] Length = 214 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 9/116 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR------SSAARNLTER 177 +GY++ L + + G ++ L S LT R Sbjct: 99 GVSGYLLKDVSVDALISTIKAVYAGETVIAPRITQMLLREVNNPVSGGPASGGLAELTAR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E ++L +G + EIA +L +S TV ++ S K+ +R QA AI+ Sbjct: 159 EREIIRLIAEGKNNREIAAELFISEKTVKNHISSIFRKIKVHDRTQAALYAIKTNL 214 >gi|226364726|ref|YP_002782508.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226243215|dbj|BAH53563.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 230 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-------N 173 L G+++ S L V A G V L ++ + + Sbjct: 98 LRAGAAGFILKDSPAEDLIRAVRTVAEGGACLDPAVTGRVLATYRTVAPSTDGERNRLTE 157 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G G+++ EI +LG+S TV +++G +KLD +R AI A G Sbjct: 158 LTARELDVLALIGRGHSNSEIGRELGISGVTVKSHVGHIFLKLDLRDRAAAIVYAFDHGI 217 Query: 234 IC 235 + Sbjct: 218 VS 219 >gi|567886|gb|AAD15247.1| regulatory protein [Streptomyces peucetius] Length = 202 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G V+ +S L++ + G + + D + LTERE LQ Sbjct: 95 LASGLGGLVLKSSPPAHLSDAIRSVHEG---RRVFDTELTLAAWGNTGCPLTEREMEILQ 151 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G EIA KL LS TV YL + K+DA NR+ A+ A G+I Sbjct: 152 LAAAGDDINEIAVKLSLSPGTVRNYLATTVRKMDARNRLDAVRIASMSGWI 202 >gi|315271311|gb|ACO47091.2| putative response regulator, NarL [Deinococcus deserti VCD115] Length = 214 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSA-ARNLTER 177 GY++ ++ L + + A G V+ DF + ++ S +L ER Sbjct: 95 AGARGYILKDADAATLIDAITRVAAGEALLDADMAQNVLDDFRDKREELPSEKHADLNER 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ET L+L G+++++IA +L +S TV L KL NR QA AIR G Sbjct: 155 ETMILKLLAQGFSNQDIALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210 >gi|309779188|ref|ZP_07673951.1| DNA-binding response regulator, LuxR family [Ralstonia sp. 5_7_47FAA] gi|308921992|gb|EFP67626.1| DNA-binding response regulator, LuxR family [Ralstonia sp. 5_7_47FAA] Length = 201 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L+ERE L + G TS EIA LGLS TV+ ++ +A KL RI+A+ + Sbjct: 133 AHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMDNAREKLGVATRIEAVVR 192 Query: 228 AIRFGYI 234 A G I Sbjct: 193 ASSSGII 199 >gi|269793732|ref|YP_003313187.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269095917|gb|ACZ20353.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 204 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ T+ L++A+ V H V + + +S LT RE L Sbjct: 97 LAVGVRGFLPKTASALVVADVVRSV-HAGGRYVDPELAA--EAIASGDSPLTAREADVLA 153 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG +EIA+++ LS TV YL +A +KL NR +A A A R G+I Sbjct: 154 LAADGSPVDEIAQRVSLSAGTVRNYLSTAVMKLGVSNRHEAAATARRHGWI 204 >gi|171914768|ref|ZP_02930238.1| DNA-binding response regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 212 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 5/113 (4%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSS--AARNLTERETSC 181 GY++ S + + + G + LELF + + A L+ RE Sbjct: 100 GAQGYLLKNSSIEEIISGIQQSLKGGVPMTPCIAHQVLELFSRFAPRHADYGLSTRERET 159 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G+ +EIA++L LS+HTV+ YL KL+ R A+AKA++ G + Sbjct: 160 LELMVQGFIRKEIADRLNLSLHTVDTYLRGVYRKLEVNTRTGAVAKALKEGLV 212 >gi|302558086|ref|ZP_07310428.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302475704|gb|EFL38797.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 211 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA V A G L + + LT RET L L Sbjct: 101 AGATGYLLKDAPPEELAAAVRTAAAGRTTLAPAVADRLMNRLRAPHAALTRRETEVLSLV 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++ I+ +L L+ TV ++L KL +R A+A A+ G I Sbjct: 161 AEGLSNQGISARLQLTRATVKSHLAHVYAKLGVDSRTSAVAAALELGVI 209 >gi|172038808|ref|YP_001805309.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700262|gb|ACB53243.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 218 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 11/118 (9%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSA----ARN 173 +GY + E L + A GA + ++ +F + + A Sbjct: 100 AIGVSGYCLKGIEAEHLVLALRSVAAGASWWDKLGTTEIYAEFSQKNPINTDETKLIANL 159 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L G T+ EIA+ L ++ TV ++ + KLD +R QA A+R Sbjct: 160 LTQREQEILALIAAGKTNSEIAQVLHIATGTVRVHVHAILQKLDVRDRTQAAILALRM 217 >gi|167646083|ref|YP_001683746.1| LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167348513|gb|ABZ71248.1| transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 244 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 14/155 (9%) Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 P W + E+ S + G+A PV+ G V + L Sbjct: 99 SHRPFAWTNTDEDMPGLSGRHV------------GLAIPVQDHAAGPGLVALIGQDLDRV 146 Query: 143 NEVIIEAHGACYQVITDFLE--LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + E A + + L R +A LT RE CL+ A G T + + LG+ Sbjct: 147 RRLAREEAAALAFAAAELHQSILASVRPAATAALTAREIECLRFAAVGRTVADTGQALGI 206 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + TV +L + KLDA N++ A+A A+ G + Sbjct: 207 TSRTVEFHLKNVAEKLDATNKVHAVAIAVSQGLVS 241 >gi|257791491|ref|YP_003182097.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|257475388|gb|ACV55708.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] Length = 214 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 7/119 (5%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLT 175 L GYV+ S L V A G Y + + ++ + + L+ Sbjct: 94 TLRGGAAGYVLKNSTSEELIAAVHAVAEGGSYIHPKMTAMLTKQLVAGGEEEDRSYQQLS 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQL G+T++EI+E++ LSV TV A+ KL R + A+R + Sbjct: 154 NRELEILQLLAKGFTNKEISEQIFLSVKTVEAHRSKIYQKLGLKTRADLVDYALRHKLL 212 >gi|21225370|ref|NP_631149.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256783610|ref|ZP_05522041.1| two-component system response regulator [Streptomyces lividans TK24] gi|289767492|ref|ZP_06526870.1| two-component system response regulator [Streptomyces lividans TK24] gi|7688304|emb|CAB89760.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289697691|gb|EFD65120.1| two-component system response regulator [Streptomyces lividans TK24] Length = 225 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ +L + A G A +IT FL A Sbjct: 97 LRSGASGFLGKDVGPDVLLAGIRTVAAGDSLLSPTATRALITRFLASPTDDVPLAAPERL 156 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE + LA G +++EIA+ L +S TV +++ A KL+A +R Q + A + Sbjct: 157 ALLTEREREVMALAALGKSNQEIADHLVVSPLTVRSHVSRAMTKLNARDRAQLVVIAYQS 216 Query: 232 GYI 234 G + Sbjct: 217 GLV 219 >gi|298250780|ref|ZP_06974584.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548784|gb|EFH82651.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 223 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 47/120 (39%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKK--------RSSAARNL 174 GY++ L + G ++ + L F + R + L Sbjct: 104 AGAMGYLLKDVPANELMATIRQVYSGVPSIQPKIASKLLVEFGRKERSATPARPAQEETL 163 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE L+L +G ++ +IAE+L L+ TV ++ + KL NR QA A + Sbjct: 164 SPREIEILKLLAEGASNRKIAEQLVLAEGTVKNHVSNILSKLHTGNRTQAAHLARERKLL 223 >gi|297198108|ref|ZP_06915505.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714199|gb|EDY58233.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK------------RSSAA 171 L +G+++ + + + V + A G +L + + Sbjct: 96 LRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAQYGGDEDGNRAARAAMER 155 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L+L G ++ EIA +L + TV +++ KL A +R QA+ A Sbjct: 156 AQLTEREAEVLRLMTRGLSNAEIAARLVVGTETVKSHVSGVLAKLGARDRTQAVIAAYES 215 Query: 232 GYIC 235 G++ Sbjct: 216 GFVA 219 >gi|54026217|ref|YP_120459.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54017725|dbj|BAD59095.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 230 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFK---KRSSAARN 173 L G+++ S L V A G + +V++ + + +R Sbjct: 103 LRAGAAGFLLKDSPAEDLIRAVRTVAGGGAWLDPAVTGRVLSAYRTVRPAPARRDDRLAE 162 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G G + EIA +LG+S TV +++G KLD +R AI A G Sbjct: 163 LTAREYEVLELIGRGRVNAEIATELGISEVTVKSHVGHIFGKLDLRDRAAAIVFAFDHGV 222 Query: 234 IC 235 + Sbjct: 223 VS 224 >gi|298242112|ref|ZP_06965919.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297555166|gb|EFH89030.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 273 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA-RNLT 175 + GY++ + + G ++++ F L + S L+ Sbjct: 154 MRAGARGYLLKGVRHEDMVRAIRAVGSGDAIFSPAIATRLVSYFSALQPEHPSQIFPELS 213 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L G + EIAE+L +S TV Y+ + KL +R QAI +A G Sbjct: 214 HRERDILALLAQGCKNAEIAERLVVSPKTVRNYVSNIISKLQVADRAQAILRAKDAGL 271 >gi|298244504|ref|ZP_06968310.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551985|gb|EFH85850.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 232 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 54/126 (42%), Gaps = 14/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFL------ELFKKRSSAARN- 173 L GY++ L N + A G ++ L F+ R+S + Sbjct: 98 LQAGACGYLLKDIRLDTLLNAIRAAARGEILMQSDIMARLLSYTTKSAPFEPRASNQSHQ 157 Query: 174 ----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LTERE L G S++IA LG++ TV AYL S KL+ +R AI AI Sbjct: 158 SSIDLTEREREVLIAVARGDRSKDIARHLGIAERTVRAYLTSIYTKLNVTSRASAITVAI 217 Query: 230 RFGYIC 235 R+G + Sbjct: 218 RYGILS 223 >gi|326774525|ref|ZP_08233790.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326654858|gb|EGE39704.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 225 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184 GY++ + L V A G L + R A LT RE L Sbjct: 105 AGAIGYLLKDATRDQLVEAVHSAARGETVLAPRVAARLVARMRRPAPVTLTPREVDVLGA 164 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ EI +L ++ TV +L KLD +R A+ +A+ + Sbjct: 165 VADGLSNVEIGRRLVIAEATVKTHLLRVFAKLDVADRTHAVVRALELNLL 214 >gi|254777627|ref|ZP_05219143.1| hypothetical protein MaviaA2_23561 [Mycobacterium avium subsp. avium ATCC 25291] Length = 218 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-----NLT 175 L G+V+ S L V A G Y V + L ++K + R LT Sbjct: 97 LRAGAAGFVLKDSSAEELIRAVRAVARGEGYLDPAVTSRVLTTYRKAAPGPRGAAIAELT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L L G G ++ EIA++L +S TV +++G KLD +R AI A G + Sbjct: 157 TRELDVLTLIGKGLSNSEIADELCISGVTVKSHIGRIFGKLDLRDRAAAIVYAYDNGIVA 216 >gi|168492022|ref|ZP_02716165.1| response regulator [Streptococcus pneumoniae CDC0288-04] gi|183573661|gb|EDT94189.1| response regulator [Streptococcus pneumoniae CDC0288-04] Length = 199 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLYTVLEGRKEY----SPELMEVMMTHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS T+ Y+ + KLDA NR +A A G++ Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|116628047|ref|YP_820666.1| DNA-binding response regulator [Streptococcus thermophilus LMD-9] gi|116101324|gb|ABJ66470.1| DNA-binding response regulator (Rec-wHTH domains) [Streptococcus thermophilus LMD-9] Length = 200 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L H + YV+ L + G EL + + L++RE L Sbjct: 93 LAAHVDAYVLKERSISDLMATIHTVLAGQKEY----SPELVEGVAFDNNPLSQREQEVLA 148 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T++EIAE L LS TV Y+ + KLDA NR +A+ A ++ Sbjct: 149 MVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIAKEKDWL 199 >gi|315093205|gb|EFT65181.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] Length = 218 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARNLT 175 L +G+++ +E L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNAEAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGSTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ +IAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLVARGLSNAQIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|284041733|ref|YP_003392073.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945954|gb|ADB48698.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 225 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173 L +G+V+ +E L V I A G V RS Sbjct: 101 LRAGASGFVLKRAEPEELVQAVRIVAGGESL-VFPQLTRALIARSVQPGAGDGGARLLTV 159 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L+L G ++ ++A++L L+VHTV ++ KL +R QA+ A G+ Sbjct: 160 LTEREAEILRLVARGMSNADVADELVLAVHTVKTHVARILAKLAVRDRTQAVVVAYESGF 219 Query: 234 I 234 + Sbjct: 220 V 220 >gi|271967312|ref|YP_003341508.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510487|gb|ACZ88765.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 218 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN-LT 175 L +GYV+ + L G A +I D+L+ ++ + LT Sbjct: 98 LKAGASGYVLKSVADRDLLEACRAAMRGEPFLYPGAITALIRDYLQRVRQGERVPESILT 157 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++L +G +++EIAE L +SV TV+ + + KL +R+ AIR G + Sbjct: 158 PREEEVVKLIAEGNSAKEIAETLVISVKTVDRHRANILQKLGMRDRLDLTRYAIRAGLV 216 >gi|27802474|gb|AAO21112.1| TraR [Rhizobium leguminosarum bv. viciae] Length = 234 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 41/216 (18%), Positives = 68/216 (31%), Gaps = 9/216 (4%) Query: 23 LIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNS 82 +++ F + R ++Y + DI + D + Sbjct: 24 ALKSFANTYGFERFAYLQTEGAEVRA-----FNSYPEEWQDIYLGNQYSRIDPVVTEAKR 78 Query: 83 GLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA 142 + W + S + +G+ PV F + F S Sbjct: 79 RMEMFSWTANDWPARGTSELRRFRDQAIEHGIRSGLTIPVEGSFGSTMMLTFASSRQTAD 138 Query: 143 NEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 + +A A V+ L + R L+ RE CL A G ++ E A Sbjct: 139 GSKLRDAQKAIQAVLAIHYRLKIIAATTIVAPKRLLSPREAMCLMWAARGKSAPETAMLT 198 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++ TV YL A KL+A Q +A A G + Sbjct: 199 GINPRTVQHYLDKAREKLEAATVPQLVAIAKDHGLV 234 >gi|322373180|ref|ZP_08047716.1| DNA-binding response regulator [Streptococcus sp. C150] gi|321278222|gb|EFX55291.1| DNA-binding response regulator [Streptococcus sp. C150] Length = 200 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L H + YV+ L + G EL + + L++RE L Sbjct: 93 LAAHVDAYVLKERSISDLMATIHTVLAGQKEY----SPELVEGVAFDNNPLSQREQEVLA 148 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T++EIAE L LS TV Y+ + KLDA NR +A+ A ++ Sbjct: 149 MVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIAKEKDWL 199 >gi|239980938|ref|ZP_04703462.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291452801|ref|ZP_06592191.1| luxR family two component system response regulator [Streptomyces albus J1074] gi|291355750|gb|EFE82652.1| luxR family two component system response regulator [Streptomyces albus J1074] Length = 221 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E++ H + + ++ LT RE L+ Sbjct: 114 LAAGVRGFVPKTVSAQRLA-ELVRSVHAGNRYIDPELAA--DAIAAGDSPLTAREAEVLE 170 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG EIAE+ LS TV YL SA KL A NR A+ A G++ Sbjct: 171 LAADGAPVAEIAERAALSPGTVRNYLSSAVTKLGAENRHSAVRLARERGWV 221 >gi|256396690|ref|YP_003118254.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362916|gb|ACU76413.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 57/123 (46%), Gaps = 15/123 (12%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRS--------SAA 171 +GY++ + + + + G +++T F L + S+A Sbjct: 100 GASGYLLKSVLPHTIPDALRAVQRGESQVSPSMAAKLMTGFAALARGADAAPAPGPVSSA 159 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L+L G + EIA++L ++ +TV ++ + KL+ +R++A+ A+R Sbjct: 160 PKLTDREMEVLKLVATGRNNREIAKELFITENTVKNHVRNILEKLNLHSRMEAVVYAVRE 219 Query: 232 GYI 234 + Sbjct: 220 KLL 222 >gi|111220014|ref|YP_710808.1| putative protein-glutamate methylesterase [Frankia alni ACN14a] gi|111147546|emb|CAJ59199.1| putative Protein-glutamate methylesterase [Frankia alni ACN14a] Length = 211 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 9/118 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKK--RSSAARNL 174 L +G+V+ + L + I A G ++I +F + ++ R L Sbjct: 78 LRGGASGFVLKDTRPEDLLAAIRIVAAGDALLTPSVTRRLIAEFAQRPQRPVRGEELTRL 137 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 TERE L G ++ EIA +L + V TV ++ KL A +R Q + A G Sbjct: 138 TEREREVLVQVAAGLSNSEIARRLFVGVTTVKTHVSRLLTKLGARDRAQLVVAAYESG 195 >gi|302542030|ref|ZP_07294372.1| two-component system, regulatory protein [Streptomyces hygroscopicus ATCC 53653] gi|302459648|gb|EFL22741.1| two-component system, regulatory protein [Streptomyces himastatinicus ATCC 53653] Length = 229 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 18/131 (13%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN--- 173 FP L GY+ ++ + V G QV LE +R + R+ Sbjct: 87 FPA-LRAGARGYLTKDADADEILRAVEGVMSGDAGLSPQVQRRLLEWLAERGGSDRDEPE 145 Query: 174 -----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LT RE L L G ++ EIA +L ++ TV ++ + K +R Sbjct: 146 RETAAGPLPDGLTPREAEVLALVAGGLSNPEIARRLMIAPATVKTHINNLFAKTAVRDRA 205 Query: 223 QAIAKAIRFGY 233 QA+ A R G Sbjct: 206 QAVRYAYRHGI 216 >gi|163848177|ref|YP_001636221.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222526082|ref|YP_002570553.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163669466|gb|ABY35832.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222449961|gb|ACM54227.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 236 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 4/98 (4%) Query: 141 LANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCLQLAGDGYTSEEIAE 196 L N+ ++ +V+ F EL + +S LT RE L G +++EIA Sbjct: 129 LINDAVLAHPNVAARVLHQFRELAATDEEDGASLFAPLTSREIEILDCIARGLSNKEIAS 188 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +S TV ++ S KL +R A+ AI+ G+I Sbjct: 189 ELSISSQTVKNHITSILAKLQVNDRTMAVIVAIKKGWI 226 >gi|89894389|ref|YP_517876.1| hypothetical protein DSY1643 [Desulfitobacterium hafniense Y51] gi|89333837|dbj|BAE83432.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 214 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 9/118 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTE 176 L GY++ + L + + I + +++ + + R + L++ Sbjct: 96 LQLGVAGYLLKDVDPKTLIDSIRKVHSGQPILSPAVTGKLLGQLVHPTQNRDT--CGLSD 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G ++ EI + L +S TV +L S KL +R QA KA++ + Sbjct: 154 RELQILTYVVKGSSNREIGQALFISEKTVKNHLSSIFRKLAVEDRTQAALKAVKLKLV 211 >gi|282862559|ref|ZP_06271620.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562245|gb|EFB67786.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 225 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSS-AARNLT 175 L +G+V+ + L GA +I ++L+ ++ AR +T Sbjct: 105 LKAGASGFVLKSVADRDLVEACRAAMRDEPFLYPGAVTALIRNYLDRVREGGDVPARAIT 164 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L +G++S+EIA L +SV TV + + KL +R++ AIR G I Sbjct: 165 EREEEILKLVAEGHSSKEIAGMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 223 >gi|302548323|ref|ZP_07300665.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302465941|gb|EFL29034.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ L + A G A +IT+FL + A Sbjct: 97 LRAGASGFLGKDVTADTLLAGLRTVASGEALLSPAATRTLITNFLMTPAPGTHLAPPQSL 156 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE + LA +G ++ EIAE L LS TV ++ A KL A +R Q + A + Sbjct: 157 SELTDREREVMGLAAEGKSNTEIAEILVLSPLTVRTHIHRAMTKLGARDRAQLVVIAYQT 216 Query: 232 GY 233 G Sbjct: 217 GL 218 >gi|239930346|ref|ZP_04687299.1| putative two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438691|ref|ZP_06578081.1| two-component regulator [Streptomyces ghanaensis ATCC 14672] gi|291341586|gb|EFE68542.1| two-component regulator [Streptomyces ghanaensis ATCC 14672] Length = 219 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK-RSSAARNLT 175 LG +GYV+ + L G A +I ++L+L + R+ + +T Sbjct: 99 LGAGASGYVLKSVADRDLVEACRATMRGEPFLYPGAVNALIRNYLDLARDGRNLPPKAIT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L +G TS++IA+ L +S TV + + KL +R++ AIR G I Sbjct: 159 DREEEILKLVAEGNTSQQIADLLVISPKTVERHRANLLSKLGLKDRLELTRYAIRVGLI 217 >gi|269955047|ref|YP_003324836.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269303728|gb|ACZ29278.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 230 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------- 173 L +G+++ +S L + V A G + +E +R A Sbjct: 95 LVAGASGFMLKSSPRAHLLHAVRTAASGEALLDPSLTRRLVESHVRRPRAVEPGQTPAQL 154 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE LQ G ++ EIA L L+ TV ++ + KL +R QA+ Sbjct: 155 AGLSPRERDVLQALARGESNAEIAGTLFLAETTVKTHVAAVLRKLGLRDRTQAVILGYEI 214 Query: 232 GYIC 235 G + Sbjct: 215 GLVV 218 >gi|73748496|ref|YP_307735.1| LuxR family DNA-binding response regulator [Dehalococcoides sp. CBDB1] gi|147669277|ref|YP_001214095.1| two component LuxR family transcriptional regulator [Dehalococcoides sp. BAV1] gi|289432544|ref|YP_003462417.1| LuxR family transcriptional regulator [Dehalococcoides sp. GT] gi|73660212|emb|CAI82819.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. CBDB1] gi|146270225|gb|ABQ17217.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. BAV1] gi|288946264|gb|ADC73961.1| two component transcriptional regulator, LuxR family [Dehalococcoides sp. GT] Length = 224 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL--ELFKKRSSAARNL 174 L G+++ + L + G +VI + + SA L Sbjct: 99 LEAGAAGFLLKNVKGTQLLEAIRSVYAGESVLQPSTTRRVIDQLINKAAKTEELSAVNPL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE L++A G ++++IA++L LS T+ +L + KL +R +AI ++ G+ Sbjct: 159 TEREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNIFKKLSVGSRTEAILYGLKRGW 217 >gi|269128686|ref|YP_003302056.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313644|gb|ACZ00019.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 225 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 44/121 (36%), Gaps = 12/121 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQV---ITDFLELFKKRSSAARNLTE------ 176 +G+++ + L + G L+ F A + Sbjct: 98 AGASGFLLKDAGPAQLIEAIRAVHSGDAVVAPSTTRRLLDRFAVHLPDAEQQSAAGALAA 157 Query: 177 ---RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L G ++ EIA +L +S TV ++G KL +R+QA+ A G Sbjct: 158 LTAREREVLHLVARGLSNAEIAGRLHVSEATVKTHMGRILTKLGLRDRVQAVVFAYETGL 217 Query: 234 I 234 + Sbjct: 218 V 218 >gi|326331827|ref|ZP_08198114.1| regulatory protein, LuxR:Response regulator receiver [Nocardioidaceae bacterium Broad-1] gi|325950324|gb|EGD42377.1| regulatory protein, LuxR:Response regulator receiver [Nocardioidaceae bacterium Broad-1] Length = 224 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK------RSSA 170 L +G++ +E + V+ G A +I+ +L++ ++ + Sbjct: 97 LRAGADGFIGKGAEPDEIVRGVLAVRDGKSLLSPAATRSLISRYLKVDRRATGGRFDARR 156 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L G +++EIA++L +S T ++ + KLDA R Q + A Sbjct: 157 LEELTPREREILVLVAGGLSNQEIADELVISPFTAKTHVNNMMTKLDAPGRAQLVIWAYE 216 Query: 231 FGYIC 235 G + Sbjct: 217 SGLVT 221 >gi|271961856|ref|YP_003336052.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505031|gb|ACZ83309.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 214 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 48/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ ++ L V A G + L + + A L+ RE L+L Sbjct: 100 AGATGYLLKDTQRDDLIRAVRTAARGEAVLSPSVATRLLGQVRAPADPLSARELEVLELI 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ E+A +L +S TV ++L KL +R A+A A R G + Sbjct: 160 AQGTTNREVAARLFISEATVKSHLLHIYTKLGVNDRAAAVAVAFRRGLL 208 >gi|149012406|ref|ZP_01833437.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] gi|147763462|gb|EDK70398.1| DNA-binding response regulator [Streptococcus pneumoniae SP19-BS75] Length = 199 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + LTE+E + L+ Sbjct: 95 AGVDAYVLKERNIADLMQTLHTVLEGGKEY----SPELMEVVMMHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS TV Y+ + KLDA NR +A A G++ Sbjct: 151 AQGLSNQEIADQLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|28869252|ref|NP_791871.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. tomato str. DC3000] gi|28852493|gb|AAO55566.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000] gi|330964604|gb|EGH64864.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016917|gb|EGH96973.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 240 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 76/228 (33%), Gaps = 15/228 (6%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + L ++ + Y + L N D G Sbjct: 24 ELDGQTAIEKALQWLRRECDSERAMFYQFKGPM------LLTFITSNVDDAWGQAYRQHE 77 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHK 128 D + + + L + WQ ++ + + +V L + G H Sbjct: 78 LITQDPVIRCYRNQLGFLNWQDAFKQYPASACYEEAVDACELLPAISYGYT------SHC 131 Query: 129 NGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G TS + + E ++ + + ++R LT RE LQ A Sbjct: 132 RGTESVTSVCTLSEVERTISAEQKYLVSSLMPVLHSVARGLKFSSRGLTLRELEVLQWAR 191 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 192 DGKTAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|284989608|ref|YP_003408162.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284062853|gb|ADB73791.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 212 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 1/111 (0%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQ 183 GY++ + LA+ V A G L + R+ AA T RE L Sbjct: 96 AAGATGYLLKDAPLPQLADAVRAAARGETVLAPPVAARLVSRLRAPAAEAPTARELEVLA 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EI +L + TV +L KL +R +A+ A+ G + Sbjct: 156 GVARGLTNAEIGRELFIGEATVKTHLLRVFAKLGVDDRTRAVMVAVERGLL 206 >gi|271963218|ref|YP_003337414.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506393|gb|ACZ84671.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 197 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ + LA + + G Y D + LTERE L Sbjct: 90 LAAGVRGFIPKDASADELATAIRKVSSGGRYL---DPEMAASAMMAGESPLTERERDALA 146 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + EIA L L+ TV YL SA KL A NRI AI A G++ Sbjct: 147 LASRGASVGEIAVSLHLTEGTVRNYLSSAITKLGASNRITAIHAAQEKGWL 197 >gi|251793298|ref|YP_003008026.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter aphrophilus NJ8700] gi|247534693|gb|ACS97939.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter aphrophilus NJ8700] Length = 209 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L +++ A G I + L + +LT+RE L Sbjct: 98 DAGADGYLLKDTEPDTLLSQLKRIAQGEVILSDSIKNLLIERQSSQEPIYSLTDREMDVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +L G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 158 RLIATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|288940789|ref|YP_003443029.1| two component LuxR family transcriptional regulator [Allochromatium vinosum DSM 180] gi|288896161|gb|ADC61997.1| two component transcriptional regulator, LuxR family [Allochromatium vinosum DSM 180] Length = 238 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANE----------VIIEAHGACYQVITDFLELFKKRSSAARN 173 L GY++ E L V E G + + S A + Sbjct: 92 LQSGAQGYLLKDMEPDALIAALGEIVQGRTVVASELTGVLARAVRGESTPVPVVSGGAAD 151 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L +G +++ IA +LG+S TV ++ + KLD +R++A A+ G Sbjct: 152 LTPREQEILCHLAEGQSNKTIARELGISEGTVKLHVKAILRKLDVHSRVEAAVIAVERGL 211 >gi|182433997|ref|YP_001821716.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178462513|dbj|BAG17033.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 225 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-FKKRSSAARNLTERETSCLQL 184 GY++ + L V A G L + R A LT RE L Sbjct: 105 AGAIGYLLKDATRDQLVEAVHSAARGETVLAPRVAARLVARMRRPAPVTLTPREVDVLGA 164 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ EI +L ++ TV +L KLD +R A+ +A+ + Sbjct: 165 VADGLSNVEIGRRLVIAEATVKTHLLRVFAKLDVADRTHAVVRALELNLL 214 >gi|108798589|ref|YP_638786.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119867689|ref|YP_937641.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|108769008|gb|ABG07730.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119693778|gb|ABL90851.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] Length = 163 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-----NLT 175 L G+V+ S L V A G Y V L +++ R +LT Sbjct: 42 LRAGVAGFVLKDSSAEELIRAVRAVARGDSYLDPAVTARVLNTYRRAPDMPRALTSVDLT 101 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L G GY++ EIA +L +S TV +++G +KL+ +R AI + G + Sbjct: 102 TRELDVLRLIGRGYSNAEIATELHISEVTVKSHIGHIFLKLELRDRAAAIVYSYDHGIVA 161 >gi|219668814|ref|YP_002459249.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219539074|gb|ACL20813.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 212 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 9/118 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTE 176 L GY++ + L + + I + +++ + + R + L++ Sbjct: 94 LQLGVAGYLLKDVDPKTLIDSIRKVHSGQPILSPAVTGKLLGQLVHPTQNRDT--CGLSD 151 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G ++ EI + L +S TV +L S KL +R QA KA++ + Sbjct: 152 RELQILTYVVKGSSNREIGQALFISEKTVKNHLSSIFRKLAVEDRTQAALKAVKLKLV 209 >gi|260428797|ref|ZP_05782774.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] gi|260419420|gb|EEX12673.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] Length = 206 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCL 182 L G+V T L N V A G Y I ++ A LT+RE L Sbjct: 95 LALGAAGFVPKTLPAKSLVNAVRFMAMGEQYAPIAFMTAAEEEEKHPLAERLTKRELEVL 154 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + +G +++EIA L L+ T+ ++ + KL+ NR QA A G Sbjct: 155 RGLSEGKSNKEIARDLDLTEPTIKLHMKTLYRKLEVNNRTQAAIVARDEGL 205 >gi|261410000|ref|YP_003246241.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261286463|gb|ACX68434.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 201 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + G LF K L+ERE L+L Sbjct: 96 AQVEGYLLKDEPIDFLIEAIRRVMKGERVVSTDLAAALFMKEE---NPLSEREIEMLRLT 152 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ +I++ L L+ TV YL SA KL+A +R QA+ A G++ Sbjct: 153 KEGMTTGDISKALFLTRGTVRNYLSSAIQKLEADSRQQAVTIAEDKGWL 201 >gi|163790348|ref|ZP_02184780.1| DNA-binding response regulator, LuxR family protein [Carnobacterium sp. AT7] gi|159874419|gb|EDP68491.1| DNA-binding response regulator, LuxR family protein [Carnobacterium sp. AT7] Length = 210 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--ARNLTERE 178 L Y++ TS +AN + G +V + K+ +LT RE Sbjct: 94 LEAGAASYILKTSTASTIANAIRSTYKGEIILEPEVTGKMMARLTKKQVHQLHDDLTNRE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G +++EIA+ L +++ TV ++ + KL+ +R QA A + I Sbjct: 154 QEILMLISQGNSNQEIADALFITLKTVKTHVSNILAKLEVEDRTQAAIYAFKHHLI 209 >gi|311743852|ref|ZP_07717658.1| two component system response regulator [Aeromicrobium marinum DSM 15272] gi|311312982|gb|EFQ82893.1| two component system response regulator [Aeromicrobium marinum DSM 15272] Length = 218 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Query: 122 VRLG--FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDF--LELFKKRSSA 170 V G+++ + +L + A+G +++T LE + Sbjct: 93 VHGALKAGARGFLLKDAGPELLVQAIHAAANGDALISPDITRRLLTTLAGLERATPPAQP 152 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L G T+ EIA++L +++ TV ++ + KL A NR++ A Sbjct: 153 IEPLTEREEEVLLTVARGRTNAEIADELHITLSTVKTHVAALMNKLGARNRVEVAMWAYE 212 Query: 231 FG 232 G Sbjct: 213 TG 214 >gi|297154023|gb|ADI03735.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 50/121 (41%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L G++ L + V A G A ++ FL S Sbjct: 93 LRAGAGGFIGKGIGAEDLLDAVRTIADGDTLLSPAATRSLVARFLATPDDTPSHHPEQLA 152 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G +++EIAE++ LS TV A++ A KL+A +R Q + A R G Sbjct: 153 VLTPREREMVALVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTG 212 Query: 233 Y 233 Sbjct: 213 L 213 >gi|257057812|ref|YP_003135644.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587684|gb|ACU98817.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 250 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIE-----------AHGACYQVITDFLELFKKRSSAARN 173 +G + +E L + + A Q D +L Sbjct: 114 AAGAHGALPRWAEPRQLTDGIRRAYVERRYTDPTLAALVPSQRTIDATDLTSGPHRLDMP 173 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL +G + +A+KL LSV TV ++ S KL A +R A++KA R G Sbjct: 174 LSRREYQVLQLIAEGLENAAVADKLYLSVETVRTHVKSILRKLGARDRTHAVSKAFRSGL 233 Query: 234 IC 235 + Sbjct: 234 LV 235 >gi|298491629|ref|YP_003721806.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298233547|gb|ADI64683.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 238 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 42/69 (60%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ +LTERE LQL +GY++ IA++L +++ TV ++ + KL A +R QA Sbjct: 169 EQPIEPYSLTERELEVLQLIVEGYSNAVIAQRLFITIGTVKTHVRNILNKLCADDRTQAA 228 Query: 226 AKAIRFGYI 234 +A+R G + Sbjct: 229 VRALRSGIV 237 >gi|320009929|gb|ADW04779.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 222 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G+++ + LA+ V + A G ++IT+F ++ + A Sbjct: 98 LRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTRRLITEFSKIAEAPRPPAMARIG 157 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERET L L G ++ EIA L ++ T+ ++ VKL +R QA A Sbjct: 158 DLTERETEVLVLIAQGLSNLEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 217 Query: 233 YIC 235 + Sbjct: 218 LVT 220 >gi|269925647|ref|YP_003322270.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789307|gb|ACZ41448.1| transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 217 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 40/69 (57%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + L+ERE L L G+T+ EIA +L ++V TV +++ + KL A NR++A+ Sbjct: 148 QNQDLLEPLSERELEILSLMASGHTNSEIARELYVAVGTVKSHVNNIYRKLGAKNRVEAL 207 Query: 226 AKAIRFGYI 234 ++A G I Sbjct: 208 SRARELGLI 216 >gi|126434190|ref|YP_001069881.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|126233990|gb|ABN97390.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 162 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-----NLT 175 L G+V+ S L V A G Y V L +++ R +LT Sbjct: 41 LRAGVAGFVLKDSSAEELIRAVRAVARGDSYLDPAVTARVLNTYRRAPDMPRALTSVDLT 100 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L G GY++ EIA +L +S TV +++G +KL+ +R AI + G + Sbjct: 101 TRELDVLRLIGRGYSNAEIATELHISEVTVKSHIGHIFLKLELRDRAAAIVYSYDHGIVA 160 >gi|291539797|emb|CBL12908.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Roseburia intestinalis XB6B4] Length = 215 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 6/102 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTERETS 180 NGY++ SE L ++ +G Y V+ + SS +LT RE Sbjct: 98 GVNGYLLKDSESAELKKAILAVVNGEDYIQPSLIPVLNSKMLDRDSDSSKIESLTRRELE 157 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L++ G ++EIAE L +S TV ++ + K+ +R Sbjct: 158 VLKMLSYGTYNKEIAEHLNISERTVKNHVSNIFKKIGVTDRT 199 >gi|229528208|ref|ZP_04417599.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)] gi|229334570|gb|EEO00056.1| transcriptional regulator LuxR family [Vibrio cholerae 12129(1)] Length = 250 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 52/161 (32%), Gaps = 5/161 (3%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 H P W + Q V + G+ P+ G V Sbjct: 89 PITRHIIETDRPFFWTKKPDVNR----EQYRVVAKPKGSGIHGLQIPIFGHLGLEGAVSL 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCLQLAGDGYTSEE 193 + + + E L + + + L++RE L L G + Sbjct: 145 GGKAIDSSPRARCELSLLSTYAFFAARRLLEYSDPNRSALLSKREKEVLSLTALGRRQAD 204 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA LG+S T+ +L +A +KL + I AI+ G I Sbjct: 205 IAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRGDI 245 >gi|126348327|emb|CAJ90048.1| putative two component system response regulator [Streptomyces ambofaciens ATCC 23877] Length = 221 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NLTER 177 +G+++ +E L V G ++I +F K+ ++A LTER Sbjct: 99 GASGFLVKDTEPEELLRAVRAVVAGDALLSPSVTRRLIAEFAARSKEPAAAGELARLTER 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L G G ++EEIA +L +S T ++ VKL A +R Q + A G + Sbjct: 159 EREVMALVGIGLSNEEIARRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|333026039|ref|ZP_08454103.1| putative two-component system response regulator [Streptomyces sp. Tu6071] gi|332745891|gb|EGJ76332.1| putative two-component system response regulator [Streptomyces sp. Tu6071] Length = 220 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK---KRSSAARN 173 L +G+++ + LA V + A G ++IT+F + + + ++ Sbjct: 91 LRAGASGFLLKDASARQLAEAVEVVARGEALLAPSVTRRLITEFARVPETVLRGPASPHP 150 Query: 174 ------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERET L G +++EIAEKL ++ TV ++ VKL +R QA Sbjct: 151 GGAYGELTERETEVLVHVARGLSNQEIAEKLYVAESTVKTHVSRVLVKLGLRDRTQAAVF 210 Query: 228 AIRFGYI 234 A + Sbjct: 211 AYENRLV 217 >gi|297626956|ref|YP_003688719.1| Two-component system response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922721|emb|CBL57298.1| Two-component system response regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 221 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L GYV + L + G A +I ++++ + R LT Sbjct: 103 LKAGAAGYVHKSMADRDLLHACRAAVRGEPFLYPGAMSTIIREYVQRGQANE-GDRLLTP 161 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G++ +EIAE L +S TV + + KL +R++ AIR G I Sbjct: 162 REEEILKLIAEGHSGKEIAEMLFISPKTVERHRANLLEKLGMKDRLELTRYAIRVGLI 219 >gi|312137865|ref|YP_004005201.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|325673369|ref|ZP_08153061.1| response regulator [Rhodococcus equi ATCC 33707] gi|311887204|emb|CBH46513.1| LuxR family two component system response regulator [Rhodococcus equi 103S] gi|325555959|gb|EGD25629.1| response regulator [Rhodococcus equi ATCC 33707] Length = 212 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTER 177 L GY++ ++ + + A+G A + + RSS R LTER Sbjct: 95 LRAGARGYLVKGADPAEVERAIRAVANGDMIVGAAVAAKAMTAVAAPRARSSVFRELTER 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L G+ + I+ +L LS TV ++ + KL +R AI +A G Sbjct: 155 EHEVLDLIARGHDNATISRRLVLSPKTVRNHVSNVLTKLGVPDRSTAIVRAREAGM 210 >gi|325675648|ref|ZP_08155332.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|325553619|gb|EGD23297.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 222 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 9/119 (7%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA--ARNLT 175 +G+++ L + + G +++ + ++ ++T Sbjct: 95 SAGASGFLLKDVPPEELLDAIRTVHRGDAVIEARSTRKLLQHVGPMLSDSAAPSLPEDMT 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G ++ EIA+K +S TV ++G K + +R+QA+ A + G + Sbjct: 155 PREIEVLEAMAHGLSNSEIAQKFVVSEATVKTHVGRVLSKTGSRDRVQAVVYAFQVGLV 213 >gi|257068341|ref|YP_003154596.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256559159|gb|ACU85006.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 225 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNL-- 174 L +G+++ S L + V + A G +I DF+ ++ + A +L Sbjct: 101 LRAGASGFLLKDSTPEELVHAVRVVADGQSLLAPPVTRALIADFVARPERSAGADASLAV 160 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE L+ G + EIA +L ++ TV ++ KL +R Q + A G Sbjct: 161 LTERELEVLRGVARGLANREIAAELVMAEQTVKTHVSRILGKLMLRDRTQLVVAAYESGL 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|308235176|ref|ZP_07665913.1| response regulator receiver domain protein [Gardnerella vaginalis ATCC 14018] Length = 240 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 29/137 (21%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------------- 173 +G+++ +E L N + G T L + S N Sbjct: 104 GASGFLLKDTEPETLLNSIRTVYQGNAIIAPTATKRLIESMISKPSNESIASEEENTENA 163 Query: 174 ----------------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LT+RE L G +++EIA+KL +S+ TV ++ K+D Sbjct: 164 SRSKQNANAYNSYLNDLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILGKID 223 Query: 218 AVNRIQAIAKAIRFGYI 234 A +R+QA+ A G + Sbjct: 224 ARDRVQAVVFAYENGLV 240 >gi|298249976|ref|ZP_06973780.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547980|gb|EFH81847.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 224 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L GY++ + L + + A G +++ S A + Sbjct: 101 LQAGACGYLLKETSAETLFHAIRTAARGEFLLQPEIMARILAQTHRSVPNSSPGAPSGNS 160 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE + L G S+EIA+ LG+S TV A+L + KL+ +R A+A A+ Sbjct: 161 TVELTERERAILIAVAHGERSKEIAQHLGVSERTVKAHLTNIYTKLNVDSRASAVASALE 220 Query: 231 FGYI 234 G + Sbjct: 221 RGLL 224 >gi|298249219|ref|ZP_06973023.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547223|gb|EFH81090.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1032 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 32/90 (35%), Positives = 46/90 (51%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 I A + D RS+ L+ RE S LQL +GY++++IAE L LS+HTV Sbjct: 941 IQAAIAPAWHTQPDPSTQAGPRSTPYEPLSARERSVLQLMAEGYSNQQIAEHLILSLHTV 1000 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ++ KL A NR QA+A+A + Sbjct: 1001 KLHVKHLLAKLGATNRTQAVARARALHILS 1030 >gi|288919771|ref|ZP_06414097.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288348871|gb|EFC83122.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 135 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 6/108 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKK---RSSAARNLTERET 179 GYV+ L + A G V LE + A L +RE Sbjct: 21 AGAAGYVLKEIRGNDLVGAIRTVASGQSLLAPSVTRRVLERLRDGPHEDPAMATLNQRER 80 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LQL DG T+ +I +LGLS TV Y+ S KL +R QA Sbjct: 81 EILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVY 128 >gi|239992911|ref|ZP_04713435.1| two-component system regulatory protein [Alteromonas macleodii ATCC 27126] Length = 214 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK------KRSSAARNL 174 + GY++ L + + +G V L+ K + L Sbjct: 95 MRAGAKGYLLKDVSLETLVDTITQIKNGKTLIQPAVTEKVLQGLKGLNVEFESFENPEPL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TE+E L+L GY+++EIA+ + S T+ + S KL +R +A+ KA+ G I Sbjct: 155 TEKEVEILRLIAAGYSNKEIADAMFKSTGTIKNQVSSIMAKLGVRDRTRAVLKALEQGVI 214 >gi|311114585|ref|YP_003985806.1| two component system response regulator [Gardnerella vaginalis ATCC 14019] gi|310946079|gb|ADP38783.1| two component system response regulator [Gardnerella vaginalis ATCC 14019] Length = 243 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 29/137 (21%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------------- 173 +G+++ +E L N + G T L + S N Sbjct: 107 GASGFLLKDTEPETLLNSIRTVYQGNAIIAPTATKRLIESMISKPSNESIASEEENTENA 166 Query: 174 ----------------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LT+RE L G +++EIA+KL +S+ TV ++ K+D Sbjct: 167 SRSKQNANAYNSYLNDLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILGKID 226 Query: 218 AVNRIQAIAKAIRFGYI 234 A +R+QA+ A G + Sbjct: 227 ARDRVQAVVFAYENGLV 243 >gi|289167132|ref|YP_003445399.1| response regulator [Streptococcus mitis B6] gi|288906697|emb|CBJ21531.1| response regulator [Streptococcus mitis B6] Length = 199 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERNIADLMQTLHTVLEGRKEY----SPELMEVVMTHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++++EIA+KL LS TV Y+ + KL A NR +A A G++ Sbjct: 151 AQGFSNQEIADKLYLSNGTVRNYVTNILSKLHAGNRTEAANIAKESGWL 199 >gi|229526554|ref|ZP_04415958.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis VL426] gi|229336712|gb|EEO01730.1| transcriptional regulator LuxR family [Vibrio cholerae bv. albensis VL426] Length = 250 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 5/161 (3%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 H P W + Q V + G+ P+ G V Sbjct: 89 PITRHIIETDRPFFWTKKPDVNR----EQYRVVAKPKGSGIHGLQIPIFGHLGLEGAVSL 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEE 193 + + + E L + L ++RE L L G + Sbjct: 145 GGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTALGRRQAD 204 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA LG+S T+ +L +A +KL + I AI+ G I Sbjct: 205 IAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRGDI 245 >gi|284034471|ref|YP_003384402.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283813764|gb|ADB35603.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 242 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 53/121 (43%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFL----ELFKKRSSAAR 172 L +G++ + L + V A G A ++ FL + + Sbjct: 110 LRAGASGFIGKGIDADGLIDAVRTIADGDALLSPAATRSLVARFLATPVDTAPRDVERLV 169 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G ++ EIA+++ +S TV A++ A KL+A +R Q +A A R G Sbjct: 170 ALTPREREMVALVATGLSNLEIADRMYVSPFTVRAHVQRAMTKLEARDRAQLVAIAYRTG 229 Query: 233 Y 233 Sbjct: 230 L 230 >gi|271963284|ref|YP_003337480.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270506459|gb|ACZ84737.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 217 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----------RSSAAR 172 L +G+++ L + + G + L ++ +A Sbjct: 90 LKAGASGFLLKDVPPSDLISAIHSVHSGDAVVAPSTTRRLLERFAVHLPSPGVVEQAALG 149 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++ EIA++L L+ TV +LG KL +R Q + A G Sbjct: 150 GLTAREREVLVLVARGLSNMEIADRLDLAEATVKTHLGRVLAKLGLRDRAQVVVYAYESG 209 Query: 233 YIC 235 + Sbjct: 210 LVT 212 >gi|239931733|ref|ZP_04688686.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440102|ref|ZP_06579492.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291342997|gb|EFE69953.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 228 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFL---------ELFKKR 167 L +G++ SE L N + I A G +I FL + R Sbjct: 97 LRAGASGFLGKGSEPDELLNAIRIAAEGEALLSPAATKGLIARFLAQEVAAGEADRDPAR 156 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + +LT RE L G++++EIAE+L +S TV ++ A KL A +R Q + Sbjct: 157 AERLESLTVREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVT 216 Query: 228 AIRFGYI 234 A G + Sbjct: 217 AYESGLV 223 >gi|238764730|ref|ZP_04625673.1| Two component transcriptional regulator, LuxR family [Yersinia kristensenii ATCC 33638] gi|238697021|gb|EEP89795.1| Two component transcriptional regulator, LuxR family [Yersinia kristensenii ATCC 33638] Length = 219 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE +L + + A G + +L ++ + LTERE L Sbjct: 108 DAGADGYLLKDSEPEILLENIRLAAKGEPVFSDEVAQYLSSRHEQVNPFSELTERELDVL 167 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 Q G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 168 QEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 209 >gi|238059874|ref|ZP_04604583.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237881685|gb|EEP70513.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 217 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTE 176 L G+++ + LA V A GA V+ +E + +SA LT+ Sbjct: 93 LRIGAAGFILKDTHPEHLAQLVRALAAGAVVLSPKVSRTVVDWRVENGEDAASAIARLTD 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L DG ++ EI ++ LS TV ++ + KL +R+QA A R G + Sbjct: 153 REREILVHVADGLSNAEIGTRMYLSGGTVKDHVSAILTKLKVTSRVQAALIAQRAGLLT 211 >gi|255038247|ref|YP_003088868.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254951003|gb|ACT95703.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 205 Score = 97.3 bits (241), Expect = 1e-18, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 45/108 (41%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +GY+I +S + + G + + LT RE L L Sbjct: 98 GASGYLIKSSGKEDILEAIAQVQAGGYFMNVQFDQVTPATAPKTVPFLTRREKEVLVLIA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ +IAE+L +SV TVN++ + +K + N I A G I Sbjct: 158 EGLTNPQIAEQLFISVTTVNSHRQNLLIKFEVSNTASLIKLAAGLGLI 205 >gi|331699140|ref|YP_004335379.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953829|gb|AEA27526.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 224 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 11/119 (9%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN--------LT 175 +G+++ +E L + V + A G V +E F RS A LT Sbjct: 100 GASGFLVKDTEPAELVHAVRVVADGDALLSPGVTRRLIEEFAVRSGPAGAVAASALTVLT 159 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE + L G T+++IAE+L +S T ++ A KL +R Q + A G + Sbjct: 160 DREREVVALVAGGLTNDDIAERLVVSPATAKTHVSRAMGKLGCRDRAQLVVLAYESGLV 218 >gi|318061580|ref|ZP_07980301.1| two component system response regulator [Streptomyces sp. SA3_actG] gi|318080493|ref|ZP_07987825.1| two component system response regulator [Streptomyces sp. SA3_actF] Length = 167 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L +G+++ L + G +++ F + A Sbjct: 38 LRAGASGFMLKDVPPSELVAAIRAVHSGDAVVAPSTTRRLLDRFAPMLPGTGPATHPELD 97 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE ++L G ++ EIA +L LS TV ++G KL +R+Q + A G Sbjct: 98 RLTGREQEVMRLVAQGLSNGEIAARLVLSEATVKTHVGRVLTKLGLRDRVQVVVLAYETG 157 Query: 233 YI 234 + Sbjct: 158 IV 159 >gi|258510658|ref|YP_003184092.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477384|gb|ACV57703.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 200 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ + LA + G +V L + + L+ RE L+ Sbjct: 94 LQAGVHGYLLKDGKVEQLAAHLRSIMTGQ--RVFDPALMMAAMETD--NPLSAREIDVLR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G T+ ++A++L LS TV YL A KL R +AI KA G++ Sbjct: 150 LAKRGLTTRQMAKELFLSEGTVRNYLSGALAKLGCATRQEAIRKADDMGWL 200 >gi|256381033|ref|YP_003104693.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255925336|gb|ACU40847.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 219 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSAARN-LTER 177 +GY++ ++ L V A G V+ ++ + R LT+R Sbjct: 98 AGASGYLVKSASAEELVEAVNRTAAGDAVFTSGLAGLVLGEYRRMAAAPDEVDRPQLTDR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ET L+L G T+ +IA +L +S TV ++ S KL NR++ AI G Sbjct: 158 ETEVLRLVAKGLTARQIATRLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 213 >gi|223934665|ref|ZP_03626585.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896620|gb|EEF63061.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 209 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GYV+ +S L + A G + I + ++ L+ RE L Sbjct: 99 LQAGAQGYVLKSSTGEKLIPALRAVAAGQRW--IPKEVANRLALRNSFEQLSPREVQVLS 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++EIA+ L ++ HT +L S KL +R +A+ A++ G I Sbjct: 157 ELARGLANKEIADVLNITEHTTKDHLKSILAKLRVADRTEAVTVALQRGII 207 >gi|126653823|ref|ZP_01725686.1| hypothetical protein BB14905_21773 [Bacillus sp. B14905] gi|126589660|gb|EAZ83797.1| hypothetical protein BB14905_21773 [Bacillus sp. B14905] Length = 229 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 97/231 (41%), Gaps = 11/231 (4%) Query: 12 SSLQELSPRLHLIQNRIKARNFALYTINSALD-FPRRQQLICELHNYDLDSGDIPNILIE 70 S+L + R +QN ++ + LD FP + + + I I + Sbjct: 2 SNLYTIQKRFDTVQNYSNHEELLIHILQVYLDSFPIKDAYLLRYSPIGFVAEGI--IFLN 59 Query: 71 TYGDDFLFHFNSGLL--PIIWQSIQEE-----TVIESSGQLSVRLEGGLLPFAGIAFPVR 123 G + + PII+ +I E+ T ++ +S++ A + P+ Sbjct: 60 EEGGSHIGEIREEIRSFPIIYSAIVEKKAKFCTGMDYLKNISIKYSISSQNNAFLIVPIF 119 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +G + GY+ T + E +++ A VI + + + L++RE ++ Sbjct: 120 IGHYVFGYICSTQIDMDKITEKLLDDFTAFGNVIGQLI-IQARDHKKGSILSKRELEVMR 178 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A+ + LS T+N Y+ SA KL A NR AI+ + G I Sbjct: 179 QIALGDSTKEMADFMNLSELTINQYVKSAIKKLQAKNRTHAISILYQEGVI 229 >gi|329924379|ref|ZP_08279496.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328940730|gb|EGG37047.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 201 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + GY++ L + G LF K L+ERE L+ Sbjct: 94 MDAQVEGYLLKDEPIDFLIEAIRRVMKGERVVSTDLAAALFMKEE---NPLSEREIEMLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T+ +I++ L L+ TV YL SA KL+A +R QA+ A G++ Sbjct: 151 LTKRGMTTGDISKALFLTRGTVRNYLSSAIQKLEADSRQQAVTIAEDKGWL 201 >gi|294813520|ref|ZP_06772163.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] gi|326442073|ref|ZP_08216807.1| response regulator receiver protein [Streptomyces clavuligerus ATCC 27064] gi|294326119|gb|EFG07762.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] Length = 252 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN-----LT 175 L +G++ L + + G +++T + F LT Sbjct: 126 LRAGASGFLPKDVSPEELTAALRTVSAGDAVVAPRLLTRLIGTFVAPQRTTEEVRLDGLT 185 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RET L+L G + IAE+LG+ V TV ++ S KL +R QA+ A G + Sbjct: 186 PRETEVLRLIATGLDNTGIAEELGIGVQTVKNHITSVFAKLGLRDRAQAVISAYESGLVS 245 >gi|282895907|ref|ZP_06303947.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] gi|281199152|gb|EFA74021.1| Two Component Transcriptional Regulator, LuxR family [Raphidiopsis brookii D9] Length = 240 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 40/65 (61%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + LT+RE L+L DG ++ +IAEKL ++V TV ++ + KL A +R QA +A+ Sbjct: 175 ESSPLTQRELEILELIVDGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRAL 234 Query: 230 RFGYI 234 R G + Sbjct: 235 RSGLV 239 >gi|284031067|ref|YP_003380998.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283810360|gb|ADB32199.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 220 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAAR-------NL 174 L +G+++ + + + A + L L + +L Sbjct: 98 LRAGASGFLLKRTPPDDIIAAIRTVAGSESLLFPEAIRGLALAHAEQQPRQFTGLARYDL 157 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L+L G ++ EIA +L L V T+ ++ + KL A +R QA+ A G++ Sbjct: 158 TEREQEVLRLMAKGLSNAEIATELVLGVQTIKTHVANLLGKLGARDRTQAVILAYESGFV 217 >gi|270308020|ref|YP_003330078.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] gi|270153912|gb|ACZ61750.1| DNA-binding response regulator, LuxR family [Dehalococcoides sp. VS] Length = 224 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRS--SAARNL 174 L G+++ + L + G +VI + K SA L Sbjct: 99 LEAGAAGFLLKNVKGTQLLEAIRAVYAGESVLQPSTTRRVIDQLINKATKTEEVSAVNPL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L++A G ++++IA++L LS T+ +L + KL +R +AI ++ G+ Sbjct: 159 TDREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNICKKLSVGSRTEAILYGLKRGW 217 >gi|167034704|ref|YP_001669935.1| LuxR family transcriptional regulator [Pseudomonas putida GB-1] gi|166861192|gb|ABY99599.1| transcriptional regulator, LuxR family [Pseudomonas putida GB-1] Length = 82 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 33/71 (46%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + + A LT RE L G +S EI L TVN ++ + K D R+ A Sbjct: 10 QPPADAPVRLTPRERQVLLWCAYGKSSWEIGRILDCKESTVNFHVSNILRKFDVPTRVVA 69 Query: 225 IAKAIRFGYIC 235 + KAIR+G + Sbjct: 70 VIKAIRYGLLA 80 >gi|111022239|ref|YP_705211.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110821769|gb|ABG97053.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 226 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 70/186 (37%), Gaps = 15/186 (8%) Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 D ++P ++E D L + I + + + L + +G Sbjct: 39 DGAEVPGAVVEHTPDVVLMDLRMKKVDGIRATRDLRSGAQPPPVLVLTTFDDDELLSG-- 96 Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR 172 L G+++ S L V A G +V+ + + Sbjct: 97 ---SLRAGAAGFILEDSPAEDLIRAVRTVAEGGACLDPAVTGRVLATYRTVAPSSDGGRN 153 Query: 173 NLTE---RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LTE RE L L G G+++ EI +LG+S TV +++G +KLD +R AI A Sbjct: 154 HLTELTARELDVLALIGRGHSNSEIGRELGISGVTVKSHVGHIFLKLDLRDRAAAIVYAF 213 Query: 230 RFGYIC 235 G + Sbjct: 214 DHGIVS 219 >gi|329939256|ref|ZP_08288592.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329301485|gb|EGG45379.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 238 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L G+V LA V A G A ++ FL + + Sbjct: 111 LRAGAGGFVGKGIGAEELAEAVRTIAGGETLLSPAATRSLVARFLATPDESTPHDSARLA 170 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G +++EIAE++ LS TV A++ A KL+A +R Q + A R G Sbjct: 171 VLTPREREMVSLVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTG 230 Query: 233 YI 234 + Sbjct: 231 LV 232 >gi|311067417|ref|YP_003972340.1| two-component response regulator [Bacillus atrophaeus 1942] gi|310867934|gb|ADP31409.1| two-component response regulator [Bacillus atrophaeus 1942] Length = 215 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 8/122 (6%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAA 171 A P L Y + +E L + + V+T + Sbjct: 89 AIPA-LQAGAKAYQLKDTEPEELVKTLRQVHSGEYKLSSAIMPHVLTHMRTQHEPEKEKY 147 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G +++EIA L +S TV ++ + KLD +R QA A++ Sbjct: 148 YQLTRREKDVLMEIASGKSNKEIAASLFISEKTVKTHVSNLLAKLDVADRTQAALFAVKH 207 Query: 232 GY 233 Sbjct: 208 HL 209 >gi|302553937|ref|ZP_07306279.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302471555|gb|EFL34648.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 204 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + +++ + LA V G + + D + A LT+RE L+ A Sbjct: 100 GADAFLVKDAPAAQLAEAVRKVLTG---ERVIDPTLAAAALAEGANPLTDREREVLRAAS 156 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ E+A L LS TV YL +A KL NR +A+ A G++ Sbjct: 157 DGSTNAELATALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVAREKGWL 204 >gi|302520212|ref|ZP_07272554.1| two-component system response regulator [Streptomyces sp. SPB78] gi|318062155|ref|ZP_07980876.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|302429107|gb|EFL00923.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 224 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK---KRSSAARN 173 L +G+++ + LA V + A G ++IT+F + + + ++ Sbjct: 95 LRAGASGFLLKDASARQLAEAVEVVARGEALLAPSVTRRLITEFARVPETVLRGPASPHP 154 Query: 174 ------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERET L G +++EIAEKL ++ TV ++ VKL +R QA Sbjct: 155 GGAYGELTERETEVLVHVARGLSNQEIAEKLYVAESTVKTHVSRVLVKLGLRDRTQAAVF 214 Query: 228 AIRFGYI 234 A + Sbjct: 215 AYENRLV 221 >gi|297195058|ref|ZP_06912456.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197721552|gb|EDY65460.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 223 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSS--------AAR 172 L +G+++ + + V + A G V +E F R A Sbjct: 98 LRAGASGFLVKDMDLDDILAAVRVVAAGDALIAPSVTRRLIEEFAARPKPPATPPHPAID 157 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T+RE L L G G ++ EIA++L +S T A++G KL A +R+Q + A G Sbjct: 158 GVTDREREVLTLIGRGLSNGEIADRLCISPATAKAHVGRLFTKLAARDRVQLVIIAYELG 217 Query: 233 YIC 235 + Sbjct: 218 LVS 220 >gi|87306600|ref|ZP_01088747.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] gi|87290779|gb|EAQ82666.1| nitrate/nitrite regulatory protein narP [Blastopirellula marina DSM 3645] Length = 210 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 6/116 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEA---HGACYQVITDFLELFKKRSSAAR---NLTERE 178 + YV+ S + + A A ++ KR A LT RE Sbjct: 95 ALGAHDYVLKGSSRETIVTAIENAATDSPIAEDSLMNRVRGAMAKRQEAKHSDIPLTNRE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G ++ EI L +S+ TV ++ + K+D +R QA A+R G + Sbjct: 155 MQVLRHLALGLSNREIGRSLTISIETVKEHVQNILRKIDVTDRTQAAVWAVRRGLV 210 >gi|326381846|ref|ZP_08203539.1| hypothetical protein SCNU_02832 [Gordonia neofelifaecis NRRL B-59395] gi|326199272|gb|EGD56453.1| hypothetical protein SCNU_02832 [Gordonia neofelifaecis NRRL B-59395] Length = 210 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 48/110 (43%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ + L + A G +L + + +LT RE + L Sbjct: 100 SAGAIGYLLKDAAPETLIAAIRSAAAGETVLGPAVAAKLLTRVTDTRPSLTARELEVVVL 159 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EIA++L +S TV ++L KLD +R + +A A + G I Sbjct: 160 LDAGLTNREIAKRLFISEATVKSHLVHIFDKLDVTSRSKVVATARQRGLI 209 >gi|324997346|ref|ZP_08118458.1| two component transcriptional regulator, LuxR family protein [Pseudonocardia sp. P1] Length = 222 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFKKRSSAA------RNL 174 L GY++ L V A G + L + + L Sbjct: 95 LRAGARGYLLKDVTLEQLVGAVRTLAAGGTLISPAITERLLRAVHGVPAPPDDGAPLQEL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE L+L GY + EIA+ L L+ TV ++ + +KL +R +A+ +A+ G + Sbjct: 155 SGRELEVLRLLAAGYANREIAQVLVLAEGTVKNHVSNVLLKLGTRDRTRAVLRALHHGLL 214 >gi|308172920|ref|YP_003919625.1| two-component response regulator [Bacillus amyloliquefaciens DSM 7] gi|307605784|emb|CBI42155.1| two-component response regulator [YhcY] [Bacillus amyloliquefaciens DSM 7] Length = 214 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 8/115 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L Y + ++ L + G V+ ++ + + LT Sbjct: 93 LKAGAKAYQLKDAQPDDLVKTLREVYSGRYRLSADIVPHVLNHMVQDDQNKEK-YYQLTP 151 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE LQ G +++EIA L +S TV ++ + KL+ +R QA A+++ Sbjct: 152 REKDVLQEIAKGKSNKEIAASLFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKY 206 >gi|304406993|ref|ZP_07388647.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304343980|gb|EFM09820.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 200 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 4/112 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G+++ S L + G + ++ EL A LTERE L+ Sbjct: 93 MRSGVCGFLLKDSPIDELGAALRKVNAGG--RAVS--AELAVSLWEAGNPLTEREQEVLR 148 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 A +G ++ EIA ++ L+ TV Y+ + KL+A NRI AI+ A G++ Sbjct: 149 YASEGLSAREIAARVHLTAGTVRNYMSESIRKLEAKNRIDAISIATHKGWLT 200 >gi|297162250|gb|ADI11962.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 217 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 50/120 (41%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELF-----KKRSSAARNLT 175 L +G+++ + + + V + A G + F + + LT Sbjct: 96 LRAGADGFLLKRARPAEIVHAVRLAAEGESLLFPAAVRSFAAARGGNKRAREAMDRAALT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ERE L+L G T+ EIA L + TV ++ + KL A +R QA+ A G++ Sbjct: 156 EREAEVLRLMARGLTNAEIAGHLVIGAETVKTHVSAVLAKLGARDRTQAVIAAYESGFVV 215 >gi|119716860|ref|YP_923825.1| response regulator receiver [Nocardioides sp. JS614] gi|119537521|gb|ABL82138.1| response regulator receiver [Nocardioides sp. JS614] Length = 207 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS-SAARNLTERETSCL 182 L GY++ ++ + + + G L R+ S LT RET L Sbjct: 97 LDAGAVGYLLKDADPEDVLQGIRAVSRGESPIHPKAARALLGVRAGSPQVQLTSRETEVL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L +G +++IA +L +S TV A+L SA ++ +R QA A R G Sbjct: 157 TLVREGLANKQIARRLDISERTVKAHLTSAFARIGVADRTQAALWAERNGL 207 >gi|332672006|ref|YP_004455014.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332341044|gb|AEE47627.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 212 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L +G+++ L + V + A G +++ DF + S+ LT Sbjct: 94 LRAGASGFLLKDVTAERLVDAVRLVADGSMLLGANVTRRLVEDFARRGRVPSTTLDALTP 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE G ++ EIA +L + TV ++ KL +R+Q + G + Sbjct: 154 REHDVALAVARGLSNGEIAAELFIGEATVKTHVSECLRKLGCRDRVQLVVTVHEAGLL 211 >gi|326798146|ref|YP_004315965.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326548910|gb|ADZ77295.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 211 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETS 180 L NGYV+ + + N + + Y +V E LT RE Sbjct: 98 LQNGANGYVLKNASAEEIINAIQSVVNKKLYFSPEVQQSLFEAALHDPMNLPKLTRREQE 157 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+ EI E L +S HTV + + K + N I A ++ I Sbjct: 158 VLRCIAEGKTTVEIGETLFISPHTVETHRRNLMQKFEVSNAAALIRVATQYQLI 211 >gi|296132074|ref|YP_003639321.1| transcriptional regulator, LuxR family [Thermincola sp. JR] gi|296030652|gb|ADG81420.1| transcriptional regulator, LuxR family [Thermincola potens JR] Length = 232 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 42/86 (48%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + A ++ + + LT RE L+L GYT+ +IA+KL +SV+TV Sbjct: 125 VIADSLIPDMMNRLSASLQVKPEKEILLTPREQEILELLAQGYTNGQIAKKLIISVNTVK 184 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ + KL NR + ++ A+ G Sbjct: 185 NHVHNILEKLGVSNRAKLVSYAMSRG 210 >gi|229505968|ref|ZP_04395477.1| transcriptional regulator LuxR family [Vibrio cholerae BX 330286] gi|229605500|ref|YP_002876204.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236] gi|229356319|gb|EEO21237.1| transcriptional regulator LuxR family [Vibrio cholerae BX 330286] gi|229371986|gb|ACQ62408.1| transcriptional regulator LuxR family [Vibrio cholerae MJ-1236] Length = 250 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 5/161 (3%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 H P W + Q V + G+ P+ G V Sbjct: 89 PITRHIIETDRPFFWTKKPDVNR----EQYRVVAKPKGSGIHGLQIPIFGHLGLEGAVSL 144 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEE 193 + + + E L + L ++RE L L G + Sbjct: 145 GGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTALGRRQAD 204 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA LG+S T+ +L +A +KL + I AI+ G I Sbjct: 205 IAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRGDI 245 >gi|297580055|ref|ZP_06941982.1| transcriptional regulator [Vibrio cholerae RC385] gi|297535701|gb|EFH74535.1| transcriptional regulator [Vibrio cholerae RC385] Length = 253 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 5/161 (3%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 H P W + Q V + G+ P+ G V Sbjct: 92 PITRHIIETDRPFFWTKKPDVNR----EQYRVVAKPKGSGIHGLQIPIFGHLGLEGAVSL 147 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEE 193 + + + E L + L ++RE L L G + Sbjct: 148 GGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTALGRRQAD 207 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA LG+S T+ +L +A +KL + I AI+ G I Sbjct: 208 IAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRGDI 248 >gi|116625514|ref|YP_827670.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228676|gb|ABJ87385.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 191 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKR-SSAARNLTERET 179 L GY++ S L + A G Y V L+ ++K ++ L+ RE Sbjct: 76 LRAGARGYLLKDSGAGELVTAIRAVAGGESYLTPAVSNAVLDDYRKHVTNPIDLLSSRER 135 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ+ +G T++EIA L LSV+TV+A+ G KL+ + + + A+R G + Sbjct: 136 EVLQMLAEGKTNKEIAVVLNLSVYTVDAHRGRIMEKLNLHSINELVRFAVRNGLV 190 >gi|94496793|ref|ZP_01303368.1| hypothetical protein SKA58_16678 [Sphingomonas sp. SKA58] gi|94423806|gb|EAT08832.1| hypothetical protein SKA58_16678 [Sphingomonas sp. SKA58] Length = 256 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 55/238 (23%), Positives = 89/238 (37%), Gaps = 24/238 (10%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALD-FPRRQQLICELHNYDLDSGDIPNI 67 +K +S +EL+ + + + I R+FAL + P R +D D P Sbjct: 20 RKVASREELAALMTCLASEIGFRHFALIHHDPLAGERPDR-----------VDIRDYPAA 68 Query: 68 LIETYGD-------DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 +++ D + +W + + + S+ G GI Sbjct: 69 IVDRLFDQGQLRRDPVIRGCLFSDGAFLWSDLDKIITFTRQDRHSLEFGAGHGLNEGITV 128 Query: 121 PVRLGFHKNGYVIFTSEFL-MLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTE 176 P L G F LA+ + A +Q L L A L Sbjct: 129 PHVLLGECIGSCTFAGATDPQLASRYLGFAQITGIFAFQAARRML-LASPLIGPAPRLHP 187 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 R C+ LAG G++++EIA +LGL+ TV+ YL A DA +R + + A+ G I Sbjct: 188 RPRDCVVLAGRGFSNKEIARELGLTPRTVDGYLTEARRLFDAHDRAELVVSAVLAGEI 245 >gi|295837969|ref|ZP_06824902.1| two-component system response regulator [Streptomyces sp. SPB74] gi|295826775|gb|EFG65041.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 224 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK---------KR 167 L +G+++ + LA V + A G ++IT+F + + + Sbjct: 95 LRAGASGFLLKDASARQLAEAVEVVARGEALLAPSVTRRLITEFARVPETVLRGPAPPRT 154 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A LTERET L G +++EIA KL ++ TV ++ VKL +R QA Sbjct: 155 GGAYGELTERETEVLVHVACGLSNQEIAAKLYVAESTVKTHVSRILVKLGLRDRTQAAVF 214 Query: 228 AIRFGYI 234 A + Sbjct: 215 AYENRLV 221 >gi|254382064|ref|ZP_04997426.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194340971|gb|EDX21937.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 222 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 14/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA----- 171 L +G+++ L + V + A G ++I ++ + + Sbjct: 94 LHAGASGFLLKDVRRDDLVHAVRVVAAGDSLLAPSVARRLIEEYTAATARPAGGPALSAE 153 Query: 172 --RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L G G ++ EIA +L +S HTV +++G+ KL +RIQA+ A Sbjct: 154 RLEVLTARERETLLHLGRGRSNAEIAAELTVSEHTVKSHVGNVLAKLGLRDRIQAVICAY 213 Query: 230 RFGYIC 235 G I Sbjct: 214 ETGLIS 219 >gi|15601642|ref|NP_233273.1| LuxR family transcriptional regulator [Vibrio cholerae O1 biovar eltor str. N16961] gi|121726448|ref|ZP_01679712.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|147671672|ref|YP_001215191.1| LuxR family transcriptional regulator [Vibrio cholerae O395] gi|153802474|ref|ZP_01957060.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|153819712|ref|ZP_01972379.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|153822367|ref|ZP_01975034.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|227812454|ref|YP_002812464.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|229510178|ref|ZP_04399658.1| transcriptional regulator LuxR family [Vibrio cholerae B33] gi|229517693|ref|ZP_04407138.1| transcriptional regulator LuxR family [Vibrio cholerae RC9] gi|254850052|ref|ZP_05239402.1| transcriptional regulator [Vibrio cholerae MO10] gi|298499668|ref|ZP_07009474.1| LuxR family transcriptional regulatory, chaperone HchA-associated [Vibrio cholerae MAK 757] gi|9658321|gb|AAF96785.1| transcriptional regulator, LuxR family [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121631043|gb|EAX63420.1| transcriptional regulator, LuxR family [Vibrio cholerae V52] gi|124121993|gb|EAY40736.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-3] gi|126509730|gb|EAZ72324.1| transcriptional regulator, LuxR family [Vibrio cholerae NCTC 8457] gi|126520130|gb|EAZ77353.1| transcriptional regulator, LuxR family [Vibrio cholerae B33] gi|146314055|gb|ABQ18595.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|227011596|gb|ACP07807.1| transcriptional regulator, LuxR family [Vibrio cholerae M66-2] gi|227015536|gb|ACP11745.1| transcriptional regulator, LuxR family [Vibrio cholerae O395] gi|229345729|gb|EEO10702.1| transcriptional regulator LuxR family [Vibrio cholerae RC9] gi|229352623|gb|EEO17563.1| transcriptional regulator LuxR family [Vibrio cholerae B33] gi|254845757|gb|EET24171.1| transcriptional regulator [Vibrio cholerae MO10] gi|297541649|gb|EFH77700.1| LuxR family transcriptional regulatory, chaperone HchA-associated [Vibrio cholerae MAK 757] Length = 253 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 5/161 (3%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 H P W + Q V + G+ P+ G V Sbjct: 92 PITRHIIETDRPFFWTKKPDVNR----EQYRVVAKPKGSGIHGLQIPIFGHLGLEGAVSL 147 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEE 193 + + + E L + L ++RE L L G + Sbjct: 148 GGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTALGRRQAD 207 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA LG+S T+ +L +A +KL + I AI+ G I Sbjct: 208 IAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRGDI 248 >gi|84495477|ref|ZP_00994596.1| putative two-component response regulator [Janibacter sp. HTCC2649] gi|84384970|gb|EAQ00850.1| putative two-component response regulator [Janibacter sp. HTCC2649] Length = 234 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 23/134 (17%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR------------- 167 L +G+++ S+ L + + A G +V T + Sbjct: 90 LRAGASGFLLKNSDPEQLVDAIRSVAGGHALLAPEVTTRVIAAMVGTGAGAAAATATPGT 149 Query: 168 -------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + LT+RE L L G G ++ EIA L L T+ ++ + KL + Sbjct: 150 GSTSPGSADQISRLTDRELEVLILMGRGRSNAEIAADLFLGEATIKTHVSNCLAKLHLRD 209 Query: 221 RIQAIAKAIRFGYI 234 R+QA+ A G I Sbjct: 210 RVQAVVFAYEVGLI 223 >gi|332280465|ref|ZP_08392878.1| transcriptional regulator [Shigella sp. D9] gi|332102817|gb|EGJ06163.1| transcriptional regulator [Shigella sp. D9] Length = 158 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT RE+ Sbjct: 45 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNRESEI 103 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS TV + + KLD + I+ I A+R G Sbjct: 104 LQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMG 154 >gi|302341508|ref|YP_003806037.1| LuxR family transcriptional regulator [Desulfarculus baarsii DSM 2075] gi|301638121|gb|ADK83443.1| two component transcriptional regulator, LuxR family [Desulfarculus baarsii DSM 2075] Length = 225 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA----R 172 L GYV+ S L + G CY ++ +F+++ + A Sbjct: 97 LKAGARGYVLKDSAGEKLVDAAKAVLRGECYLDSPVAGHIVDEFVKMPDMTPAPAQDSQE 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L +G + EIA+KL LS TV + + KL + I + AI G Sbjct: 157 RLTDRERQLLRLVVEGLPNREIADKLCLSQKTVENHRANIMRKLGRHDVIGLVKYAIATG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|300936213|ref|ZP_07151149.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] gi|300458670|gb|EFK22163.1| transcriptional regulator, LuxR family [Escherichia coli MS 21-1] Length = 221 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT RE+ Sbjct: 108 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNRESEI 166 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS TV + + KLD + I+ I A+R G Sbjct: 167 LQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMG 217 >gi|300898079|ref|ZP_07116447.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|301027468|ref|ZP_07190805.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|331674332|ref|ZP_08375092.1| putative 2-component transcriptional regulator [Escherichia coli TA280] gi|300358217|gb|EFJ74087.1| transcriptional regulator, LuxR family [Escherichia coli MS 198-1] gi|300394976|gb|EFJ78514.1| transcriptional regulator, LuxR family [Escherichia coli MS 69-1] gi|323966643|gb|EGB62075.1| luxR family protein regulatory protein [Escherichia coli M863] gi|331068426|gb|EGI39821.1| putative 2-component transcriptional regulator [Escherichia coli TA280] Length = 221 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT RE+ Sbjct: 108 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNRESEI 166 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS TV + + KLD + I+ I A+R G Sbjct: 167 LQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMG 217 >gi|293412200|ref|ZP_06654923.1| predicted protein [Escherichia coli B354] gi|291468971|gb|EFF11462.1| predicted protein [Escherichia coli B354] Length = 210 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT RE+ Sbjct: 97 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNRESEI 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS TV + + KLD + I+ I A+R G Sbjct: 156 LQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMG 206 >gi|293416096|ref|ZP_06658736.1| response regulatory protein ygeK [Escherichia coli B185] gi|331654339|ref|ZP_08355339.1| putative 2-component transcriptional regulator [Escherichia coli M718] gi|291432285|gb|EFF05267.1| response regulatory protein ygeK [Escherichia coli B185] gi|331047721|gb|EGI19798.1| putative 2-component transcriptional regulator [Escherichia coli M718] Length = 210 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT RE+ Sbjct: 97 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNRESEI 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS TV + + KLD + I+ I A+R G Sbjct: 156 LQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMG 206 >gi|218706350|ref|YP_002413869.1| hypothetical protein ECUMN_3185 [Escherichia coli UMN026] gi|293406343|ref|ZP_06650269.1| predicted protein [Escherichia coli FVEC1412] gi|298382079|ref|ZP_06991676.1| response regulatory protein ygeK [Escherichia coli FVEC1302] gi|331664414|ref|ZP_08365320.1| putative 2-component transcriptional regulator [Escherichia coli TA143] gi|218433447|emb|CAR14349.1| conserved hypothetical protein, putative Bacterial regulatory protein LuxR family [Escherichia coli UMN026] gi|284922792|emb|CBG35880.1| putative two-component response regulator [Escherichia coli 042] gi|291426349|gb|EFE99381.1| predicted protein [Escherichia coli FVEC1412] gi|298277219|gb|EFI18735.1| response regulatory protein ygeK [Escherichia coli FVEC1302] gi|323978530|gb|EGB73612.1| luxR family protein regulatory protein [Escherichia coli TW10509] gi|331058345|gb|EGI30326.1| putative 2-component transcriptional regulator [Escherichia coli TA143] Length = 210 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT RE+ Sbjct: 97 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNRESEI 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS TV + + KLD + I+ I A+R G Sbjct: 156 LQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMG 206 >gi|157162307|ref|YP_001459625.1| LuxR family transcriptional regulator [Escherichia coli HS] gi|170018901|ref|YP_001723855.1| two component LuxR family transcriptional regulator [Escherichia coli ATCC 8739] gi|157067987|gb|ABV07242.1| transcriptional regulator, LuxR family [Escherichia coli HS] gi|169753829|gb|ACA76528.1| two component transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|323941628|gb|EGB37808.1| luxR family protein regulatory protein [Escherichia coli E482] gi|332344746|gb|AEE58080.1| response regulator protein [Escherichia coli UMNK88] Length = 210 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT RE+ Sbjct: 97 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNRESEI 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS TV + + KLD + I+ I A+R G Sbjct: 156 LQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMG 206 >gi|20141967|sp|Q46791|YGEK_ECOLI RecName: Full=Putative uncharacterized response regulatory protein ygeK Length = 210 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT RE+ Sbjct: 97 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNRESEI 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS TV + + KLD + I+ I A+R G Sbjct: 156 LQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMG 206 >gi|15832966|ref|NP_311739.1| hypothetical protein ECs3712 [Escherichia coli O157:H7 str. Sakai] gi|168747683|ref|ZP_02772705.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4113] gi|168753777|ref|ZP_02778784.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4401] gi|168759967|ref|ZP_02784974.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4501] gi|168766832|ref|ZP_02791839.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4486] gi|168775716|ref|ZP_02800723.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4196] gi|168778853|ref|ZP_02803860.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4076] gi|168799972|ref|ZP_02824979.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC508] gi|195936460|ref|ZP_03081842.1| hypothetical protein EscherichcoliO157_08342 [Escherichia coli O157:H7 str. EC4024] gi|208808850|ref|ZP_03251187.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4206] gi|208813228|ref|ZP_03254557.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4045] gi|208818554|ref|ZP_03258874.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4042] gi|209398226|ref|YP_002272320.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4115] gi|217327388|ref|ZP_03443471.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. TW14588] gi|254794795|ref|YP_003079632.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|20140955|sp|P58664|YGEK_ECO57 RecName: Full=Uncharacterized response regulatory protein ygeK gi|13363184|dbj|BAB37135.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|187768739|gb|EDU32583.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4196] gi|188017817|gb|EDU55939.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4113] gi|189003396|gb|EDU72382.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4076] gi|189358682|gb|EDU77101.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4401] gi|189363784|gb|EDU82203.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4486] gi|189369373|gb|EDU87789.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4501] gi|189377667|gb|EDU96083.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC508] gi|208728651|gb|EDZ78252.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4206] gi|208734505|gb|EDZ83192.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4045] gi|208738677|gb|EDZ86359.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4042] gi|209159626|gb|ACI37059.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. EC4115] gi|209747612|gb|ACI72113.1| hypothetical protein ECs3712 [Escherichia coli] gi|209747614|gb|ACI72114.1| hypothetical protein ECs3712 [Escherichia coli] gi|209747616|gb|ACI72115.1| hypothetical protein ECs3712 [Escherichia coli] gi|217319755|gb|EEC28180.1| transcriptional regulator, LuxR family [Escherichia coli O157:H7 str. TW14588] gi|254594195|gb|ACT73556.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. TW14359] gi|320189186|gb|EFW63845.1| Hypothetical response regulatory protein ygeK [Escherichia coli O157:H7 str. EC1212] Length = 210 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT RE+ Sbjct: 97 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNRESEI 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS TV + + KLD + I+ I A+R G Sbjct: 156 LQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMG 206 >gi|291302711|ref|YP_003513989.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571931|gb|ADD44896.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 219 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 15/127 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRS------------ 168 LG +G+++ + + L + A GA + QV + + S Sbjct: 89 LGDGASGFLLKSGDPRELIAGIHAVAAGAAFLSPQVAQRVIAELARGSGGGKLSRAATAR 148 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT+RE L L G G ++ EIA++L + TV AY+ + +L+ NR+QA A Sbjct: 149 TKIDKLTDREREVLALVGAGCSNAEIAKRLHVVEGTVKAYVSAILTRLEVRNRVQAAIIA 208 Query: 229 IRFGYIC 235 G + Sbjct: 209 YEAGLVT 215 >gi|256395183|ref|YP_003116747.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361409|gb|ACU74906.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 224 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 12/120 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA-----RN 173 +G+++ +E L + A G ++I +F K+ + Sbjct: 98 AGASGFLLKDTEPADLLRGLRAVAAGEALLAPSVTRRLIAEFAVRSKRTGPNPAAEQIKA 157 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L L G ++EEIA++L LS T ++ + VKL A +R Q + A G Sbjct: 158 LTEREREVLALVAAGLSNEEIADRLVLSPLTAKTHVSRSMVKLGARDRAQLVVLAYESGL 217 >gi|159037407|ref|YP_001536660.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916242|gb|ABV97669.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 230 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA---RN 173 L +G+++ L + + A G +VI F + ++ A Sbjct: 106 LRAGASGFLLKNGTPEALVAAIRVVARGDGLIAPELTRRVIAAFAGPGGEPTTTAVALPE 165 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G + EIA L L TV ++ KL +R+QA+ A G Sbjct: 166 LTPREHEVLVLVASGANNAEIAAALRLGEATVKTHVSRVLAKLGLRDRVQAVVFAYEHGV 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|308187897|ref|YP_003932028.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1] gi|308058407|gb|ADO10579.1| Nitrate/nitrite response regulator protein [Pantoea vagans C9-1] Length = 215 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARNLTE 176 L +GY++ E L + A G ++ E ++ LT Sbjct: 98 LKRGADGYLLKDMEPEALLKALHQAAAGQIVLSEALTPILVARLRESQPAQTRDISQLTR 157 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE LQL DG T++ IA KL +S TV ++ K++ +R++A A++ G Sbjct: 158 RERDILQLISDGMTNKAIARKLDISESTVKVHVKYLLKKINLKSRLEAAVWALQNGL 214 >gi|315505839|ref|YP_004084726.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315412458|gb|ADU10575.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 222 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN------- 173 L + +++ + LA V + A G V L+ + R A Sbjct: 95 LRAGASAFLLKDTRPADLAEAVRVVARGEALLAPTVTRRLLDRYADRLPAPAPAGDVLAV 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L ++ EIA +L LS TV ++ + KL +RIQA+ A G Sbjct: 155 LTAREREVLTLTARALSNAEIAARLHLSTATVKTHVSAILTKLSLRDRIQAVVLAYDTGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|223935483|ref|ZP_03627400.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895893|gb|EEF62337.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 233 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 8/111 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L +GY++ ++ L ++ G +V+ F + + R R L+ Sbjct: 110 LEAGADGYLLKRTKPTDLRAALLDVLSGGAPMTSEIARRVVESFRRVSRNRQDTIR-LSA 168 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RE L + GY+++EIA+K+ LSV TV ++L K+ +R +A+A+ Sbjct: 169 REEEVLVMLSKGYSNKEIADKIDLSVETVRSHLKHIYEKMHVRSRTEAVAR 219 >gi|158318878|ref|YP_001511386.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158114283|gb|ABW16480.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 225 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L + +V+ LA V A G ++I F E S+ +R Sbjct: 96 LRAGASAFVLKDIPADQLAGAVRTVADGGALLAPSITRRLIGRFTERRAVGSAPSRRVER 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE + G ++ EIA++L + TV +++ S KL +R Q + A G Sbjct: 156 LTDRERDVVVAVARGSSNSEIAQELFIGPATVKSHVSSILTKLGLRDRTQVVVFAYESGL 215 Query: 234 I 234 + Sbjct: 216 V 216 >gi|328552560|gb|AEB23052.1| two-component response regulator (YhcY) [Bacillus amyloliquefaciens TA208] gi|328910960|gb|AEB62556.1| two-component response regulator [Bacillus amyloliquefaciens LL3] Length = 214 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 8/115 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L Y + ++ L + G V+ ++ + + LT Sbjct: 93 LKAGAKAYQLKDAQPDDLVKTLREVYSGRYRLSADIVPHVLNHMVQDDQNKEK-YYQLTP 151 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE LQ G +++EIA L +S TV ++ + KL+ +R QA A+++ Sbjct: 152 REKDVLQEIAKGKSNKEIAASLFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKY 206 >gi|289679671|ref|ZP_06500561.1| regulatory protein, LuxR [Pseudomonas syringae pv. syringae FF5] Length = 160 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 61/165 (36%), Gaps = 9/165 (5%) Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA-GIAFPVRLGFHKNGY 131 D + + + L + WQ + + + V L + G H G Sbjct: 1 QDPVIRCYRNQLGFLNWQDAFRQYPVSAFYDALVDTCELLPAISYGYT------NHCRGA 54 Query: 132 VIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 TS + + E ++ + + +R LT RE LQ A DG Sbjct: 55 DSVTSVCTLGEVERPISAEQKYLMSSLMPVLHSVARGLKFCSRGLTHRELEVLQWARDGK 114 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 115 TAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 159 >gi|312198290|ref|YP_004018351.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311229626|gb|ADP82481.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 248 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA----AR 172 L G+++ ++ L + A G ++I F+ + +S A Sbjct: 120 LRAGAAGFILKDTQPENLLAAIRTVAAGDALLAPGVTRRLIAAFVRVPAPPASPLTGLAS 179 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE + L +GY++ EIA+ L +SV TV ++G KL A +R Q + A G Sbjct: 180 TLTDRERAVLTQIANGYSNAEIAQALYVSVSTVKTHVGHLLAKLAARDRAQLVIAAYESG 239 Query: 233 YIC 235 + Sbjct: 240 LVA 242 >gi|269796958|ref|YP_003316413.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269099143|gb|ACZ23579.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 222 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ + L + V A G A +I ++ + A + Sbjct: 97 LRAGASGFLGKGVDPAALIDAVRTVAEGEQLLSPAATRSLIERVVQEPEPEPPAVVHGMS 156 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G ++ EI + L +S TV ++ A +K A +R Q + A G Sbjct: 157 DLTEREREITSLVAGGLSNTEIGQHLFISPATVKTHVNRAMMKTGARDRAQLVVFAYDAG 216 Query: 233 Y 233 Sbjct: 217 L 217 >gi|225175953|ref|ZP_03729945.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225168541|gb|EEG77343.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 225 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSS-----AARNLT 175 L GY++ L + G C V ++ F++ A +LT Sbjct: 96 LEAGATGYLLKDVNCQELIRSIYSVDKGEPVLCPSVAAKVMQRFRRGEDSETNNAVDSLT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L + +G+ ++EIA +L +S TV A+L S KL +R +AI A++ G I Sbjct: 156 GREVEVLTMVANGHRNQEIASRLYVSKRTVEAHLASIFSKLKVGSRTEAILFALKEGMIS 215 >gi|114565755|ref|YP_752909.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336690|gb|ABI67538.1| response regulator receiver protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 213 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 5/115 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRS--SAARNLTERETS 180 + Y++ L + + +G +V + ++ + LT+RE Sbjct: 97 AGASAYILKDVAGSELVDTIHRVMNGEVVIYPRVANRLVRELRQSENRKSEIRLTKREKD 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L G T++E+AE + +S TV +L S KL +R A A++ + Sbjct: 157 VLTLLVKGNTNKEMAEVMFISEKTVKNHLTSIFRKLGVKDRTHAAIYALKNRIVS 211 >gi|271967702|ref|YP_003341898.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510877|gb|ACZ89155.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 227 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V+ + LA V G +VI L + + LT RE L+ Sbjct: 94 LDAGARGFVVKDTPAGQLAECVRRVVAGE--RVIDPELAVAALNARQ-NPLTTRELEVLK 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G EIA++L LS TV YL K+ A R++A+ A G++ Sbjct: 151 AAAEGAPVREIADRLFLSGGTVRNYLSRILAKIGARTRVEAVTIAREAGWL 201 >gi|75812491|ref|YP_320110.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705247|gb|ABA24921.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 223 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 12/121 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------------KKRSSAARN 173 GY + L + A GA + T E+ + R+ + Sbjct: 100 AGAQGYCLKGIAAEKLVLALRSVASGASWWDATATQEIRSSLSYETPQLEPENRAKLSNP 159 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G T++EIA +L ++ TV ++ + KL+ +R QA+ A++ Sbjct: 160 LTGREQEILSLLAAGKTNQEIAHQLCIAPGTVRVHIHAILQKLEVSDRTQAVLVALQKQL 219 Query: 234 I 234 I Sbjct: 220 I 220 >gi|312972929|ref|ZP_07787102.1| bacterial regulatory s, luxR family protein [Escherichia coli 1827-70] gi|310332871|gb|EFQ00085.1| bacterial regulatory s, luxR family protein [Escherichia coli 1827-70] Length = 123 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT RE+ Sbjct: 10 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNRESEI 68 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS TV + + KLD + I+ I A+R G Sbjct: 69 LQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMG 119 >gi|297199555|ref|ZP_06916952.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197713519|gb|EDY57553.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--L 174 L +G+++ + L + + A G ++I FL + L Sbjct: 97 LRAGASGFLVKDTRPADLLDAIRTVAAGEALLSPGPTARLIERFLRSPSVPVAGGGPECL 156 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++RE L L G + EIAE LGLS T ++ KL A +R Q + A G + Sbjct: 157 SDREREVLALVARGLNNTEIAETLGLSPLTAKTHVSRIMGKLGARDRAQLVIVAYESGTV 216 Query: 235 C 235 Sbjct: 217 T 217 >gi|16077998|ref|NP_388814.1| two-component response regulator YhcY [Bacillus subtilis subsp. subtilis str. 168] gi|221308771|ref|ZP_03590618.1| hypothetical protein Bsubs1_05153 [Bacillus subtilis subsp. subtilis str. 168] gi|221313094|ref|ZP_03594899.1| hypothetical protein BsubsN3_05089 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318020|ref|ZP_03599314.1| hypothetical protein BsubsJ_05033 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322294|ref|ZP_03603588.1| hypothetical protein BsubsS_05134 [Bacillus subtilis subsp. subtilis str. SMY] gi|81814998|sp|O07528|YHCZ_BACSU RecName: Full=Uncharacterized transcriptional regulatory protein yhcZ gi|2226141|emb|CAA74433.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168] gi|2633256|emb|CAB12761.1| two-component response regulator [YhcY] [Bacillus subtilis subsp. subtilis str. 168] Length = 214 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 10/118 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ----VITDFLELFKKRSSAAR----NLT 175 L Y + +E L + HG Y+ ++ L K + + LT Sbjct: 93 LQAGAKAYQLKDTEPEELVKT--RQVHGGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLT 150 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L +G +++EIA L +S TV ++ + KL+ +R QA A+++ Sbjct: 151 RREKDVLTEIANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNL 208 >gi|319940792|ref|ZP_08015131.1| NarL protein [Sutterella wadsworthensis 3_1_45B] gi|319805674|gb|EFW02455.1| NarL protein [Sutterella wadsworthensis 3_1_45B] Length = 220 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 13/121 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L GY++ + L + +G Q++T F+ + AAR Sbjct: 94 LKLGARGYLLKKIDQDFLLRSIRAAYNGDSVISPQMMTKFVNRLSEPPEAARTRQAQGTD 153 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G +++EIA L L+ TV ++ S KL+ +R+QA AI Sbjct: 154 PTVLTRRERQTLAWLARGVSNKEIARALNLAESTVKVHVQSILRKLNLSSRVQAAIYAIE 213 Query: 231 F 231 Sbjct: 214 H 214 >gi|285808415|gb|ADC35942.1| two component transcriptional regulator LuxR family [uncultured bacterium 70] Length = 210 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L LA V A G V + + LT RE LQ Sbjct: 98 LDNGARGYILKNALDLDLAGAVKRVAAGETV-VDPSVDKPPSLKGERTHGLTPRELEVLQ 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G +++EIAE+LGLSV+TV + + L + + AI G + Sbjct: 157 LICSGMSNKEIAEELGLSVNTVAVHRANIMNALGLHKTAELVVYAISNGLVT 208 >gi|300088311|ref|YP_003758833.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528044|gb|ADJ26512.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 231 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%) Query: 152 ACYQVITDFLELFKKRS--SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +V+ +F EL + LT+RE L DG T+++IA +L +S T+ ++ Sbjct: 135 IAQRVLRNFQELAEDDDGLDVVTPLTQRERQILIRVTDGLTNKQIATELKISEQTIKNHI 194 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL+A +R A AIR GYI Sbjct: 195 SAILRKLNANDRAHAAVLAIRRGYI 219 >gi|256394564|ref|YP_003116128.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360790|gb|ACU74287.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 201 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L GY+ S +A + A G +T L A+ +LT RE Sbjct: 89 LRAGATGYLTKESGRAEIARAIEAAASGQSVLDDGVTAILLAAAVEVPASADLTPREAEV 148 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G ++ EIA +L +S TV ++ + K+ +R QA+ A+R G Sbjct: 149 LTLIARGKSNTEIAGELFVSAATVKTHINNLFAKIGVRDRAQAVRYALRRGL 200 >gi|254390102|ref|ZP_05005323.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294813469|ref|ZP_06772112.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326441818|ref|ZP_08216552.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197703810|gb|EDY49622.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326068|gb|EFG07711.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 219 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G+++ + LA V + A G ++I +F +L + A+ Sbjct: 95 LRAGASGFLLKDASARQLAEGVRVVASGEALLAPTVTRRLINEFSKLAQAPRIASVAQLG 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERET L L G ++ EIA L ++ T+ ++ VKL +R QA A Sbjct: 155 ELTERETEVLALIAQGLSNAEIASHLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEAR 214 Query: 233 YIC 235 + Sbjct: 215 LVT 217 >gi|82940562|emb|CAJ44291.1| putative transcription regulator protein MotR, LuxR family [Rhizobium leguminosarum bv. viciae] Length = 248 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 91/229 (39%), Gaps = 24/229 (10%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTIN----SALDFPRRQQLICELHNYDLDSGDIPN 66 +S L L + + + A ++ L + S LDF ++ +DL DI N Sbjct: 39 VTSSGRLQSGLRALTDYVGASHYLLARCDLLQESGLDF-----IVSSDWPFDLVR-DIAN 92 Query: 67 ILIETYGDDF-LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 L+ Y L P ++ S ++ +G + + F +G Sbjct: 93 DLVRGYARSTELERCMQVFQP-------NFALLPDSAEVP---DGASRQYCSVTF--NVG 140 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + + E +L+ E + + G + FL R LT+RE CL Sbjct: 141 RSRLALMFLFGEGFILSPERLRDV-GLLAGYVASFLRCGGTRVDRDFELTDRELECLFWI 199 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 200 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248 >gi|317127430|ref|YP_004093712.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315472378|gb|ADU28981.1| two component transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 211 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTE 176 L GY++ +E L + G +V+ ++ + +LT Sbjct: 94 LKSGACGYMLKDAEPEELIRSIRSCLAGGLSLQDHVAAKVMPRLIKQSTEEVKVDPSLTP 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE ++ G+G +++EIA +L LSV TV ++ KL+ +R Q AI+ Sbjct: 154 RELDIIRKIGEGRSNKEIAMQLSLSVGTVKNHISIILDKLELRDRTQIAIYAIKH 208 >gi|218658162|ref|ZP_03514092.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli IE4771] Length = 144 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 3/126 (2%) Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 EG + + F +G + + E +L+ E + + G + FL R Sbjct: 22 EGASRQYCSLTF--NVGRSRLALMFLFGEGFILSPERLRDV-GLLAGYVASFLRCGGARV 78 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A Sbjct: 79 DRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFA 138 Query: 229 IRFGYI 234 +R + Sbjct: 139 VRNNLV 144 >gi|260906661|ref|ZP_05914983.1| putative two-component system response regulator [Brevibacterium linens BL2] Length = 216 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L +G+++ T+E L + V A G +V +E + + Sbjct: 94 LAAGASGFLLKTAEAEQLIDAVTALAGGDGLLSPEVTRRVIERSVRSPESTTPAAPELEL 153 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ EIA +L + TV ++ + KLD +RI + A + G Sbjct: 154 LTGRELEVLHLVAGGLSNSEIAGRLFVGEATVKTHVSNLLTKLDIRDRIHVVIFAYQNGV 213 Query: 234 I 234 + Sbjct: 214 V 214 >gi|84495104|ref|ZP_00994223.1| putative two component system response regulator [Janibacter sp. HTCC2649] gi|84384597|gb|EAQ00477.1| putative two component system response regulator [Janibacter sp. HTCC2649] Length = 224 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 11/120 (9%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN----LT 175 +G+++ +E L V A G ++I +F + S A LT Sbjct: 99 GASGFLVKDTEPTELLRGVRAVAGGDALLSPRVTRRLIGEFASRSRDTSMPAARELALLT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +RE + L G+G +++EIA +L +S T ++ A VKL A +R Q + A G + Sbjct: 159 DREREIVGLVGEGLSNDEIATRLVVSPATAKTHVSRAMVKLHARDRAQLVVLAYESGLVT 218 >gi|271967487|ref|YP_003341683.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270510662|gb|ACZ88940.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 239 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L G++ S L+ + G +++T + + + R Sbjct: 103 LRAGAYGFLPKDSSPEDLSAAIRTVHAGEAAVAPRLLTRLISTYVRAPHGTRPTPTGLGE 162 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +L G + I+ L +S+ TV Y+ S KL +R QA+ A G Sbjct: 163 LTPREVEVWRLMATGLDNTGISRTLDISLSTVKNYITSIFDKLAVRDRAQAVIVAYESGL 222 Query: 234 IC 235 + Sbjct: 223 VT 224 >gi|291612623|ref|YP_003522780.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291582735|gb|ADE10393.1| two component transcriptional regulator, LuxR family [Sideroxydans lithotrophicus ES-1] Length = 215 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 6/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANE---VIIEAHGACYQVITDFLELFKKRSSAA---RNLTER 177 L +GY++ L + ++ A V ++L K+ + + LT R Sbjct: 97 LNAGADGYLLKDQTDEQLIRDLHGILNGAPPLSPPVARRIMQLAKQTPATSLLLVPLTAR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L G + EIA+ L +S HT+ A++ S KLD +R +A +AIR G I Sbjct: 157 EEEVLTYIAKGLSRTEIAQLLSVSAHTIIAHVRSIYSKLDISSRAEATVEAIRRGLIS 214 >gi|167644589|ref|YP_001682252.1| two component LuxR family transcriptional regulator [Caulobacter sp. K31] gi|167347019|gb|ABZ69754.1| two component transcriptional regulator, LuxR family [Caulobacter sp. K31] Length = 212 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ ++ L + + H + ++ + L+ERE L+ Sbjct: 102 LKAGATGYLLKSTLRRELLDTIRNV-HAGRRHLQSEVAHEIAIH-AIDEALSEREAHVLR 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++IA +L LS TV A+L S KLD +R A+ A R G I Sbjct: 160 LVAAGRANKQIAWELSLSEDTVKAHLKSIFAKLDVADRTHAVTIAARRGII 210 >gi|37523311|ref|NP_926688.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] gi|35214315|dbj|BAC91683.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 221 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + + LT RE L + +G ++ IA +L +S HTV ++GS KL+A +R Sbjct: 147 QPRPPTEAPEQPLTPREVEVLSMLAEGLGNKTIARRLQISEHTVKFHIGSIFGKLEATSR 206 Query: 222 IQAIAKAIRFGYI 234 +A+ +R G I Sbjct: 207 TEAVTLGVRRGLI 219 >gi|317054416|ref|YP_004118441.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] gi|316952411|gb|ADU71885.1| transcriptional regulator, LuxR family [Pantoea sp. At-9b] Length = 243 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 60/180 (33%), Gaps = 12/180 (6%) Query: 68 LIETYG--DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 L Y D + + + + P+IW + +++ L +G F + Sbjct: 59 LKNRYQSIDPIIINALNRVSPVIWDETLIVNSQWTIRKITDSLRPDYNIVSGHTFVLHDQ 118 Query: 126 FHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLT 175 + + E + + G L L+ + S L+ Sbjct: 119 NNYLAVLSLYVNKFLEPEIDDKVKKHRNDLQGVLIDTHEMLLHLYHEENVRTSRHDDTLS 178 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L + G T EIA L ++V TV ++G KL N AI+ AI I Sbjct: 179 ARENEILYWSSTGKTYPEIARMLDITVSTVKFHMGKIVKKLGVNNAKHAISLAIELNIIS 238 >gi|319441256|ref|ZP_07990412.1| two-component system transcriptional regulatory protein [Corynebacterium variabile DSM 44702] Length = 205 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 43/111 (38%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L V+ A G L ++ L+ RET L+ Sbjct: 95 LAAGARGYLLKDAPETDLHRAVMSTARGDPTFSPEVGAALARRVGRPDLALSRRETEILR 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ E+A L +S TV +L KL NR A+ +A I Sbjct: 155 ALATGASNREVASSLFISPATVKTHLIHIYRKLGVDNRTAAVTEAQVRKLI 205 >gi|298253881|ref|ZP_06977468.1| response regulator of two-component system [Gardnerella vaginalis 5-1] gi|297532024|gb|EFH70999.1| response regulator of two-component system [Gardnerella vaginalis 5-1] Length = 257 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 41/150 (27%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARN----- 173 +G+++ +E L N + A A ++I + ++ K ++ N Sbjct: 106 AGASGFLLKDTEPETLLNSIRTVYQGNAIIAPTATKRLIENMIQQGKVATNTTENSAANY 165 Query: 174 -----------------------------LTERETSCLQLAGDGYTSEEIAEKLGLSVHT 204 LT+RE L G +++EIA+KL +S+ T Sbjct: 166 TAQVSYDVQANPAAQETQSCAYTNSAITELTDREREVLVEIAHGLSNQEIADKLFISLPT 225 Query: 205 VNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 V ++ K+ A +R+QA+ A G + Sbjct: 226 VKTHVAHILGKIGARDRVQAVVFAYENGLV 255 >gi|291006472|ref|ZP_06564445.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 210 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 2/114 (1%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETS 180 L +G ++ + L + V AHG + + + LT+RE Sbjct: 97 TLDAGVDGCLLKDAGATDLVSAVHQAAHGIPIFDPRVGERAAPRMRSRLHDTGLTQREYD 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ A G T+ EIA++LGL+ HTV YL +A KL+A NRI+ IAKA + G + Sbjct: 157 VLRHAAAGRTNPEIADQLGLTRHTVTGYLRNAMRKLNARNRIELIAKAAQSGLL 210 >gi|223936027|ref|ZP_03627941.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895249|gb|EEF61696.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 209 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTE 176 L +GY++ + L + G +V+ F NL+ Sbjct: 95 LAAGASGYLLKRTPRTELLEAIREVKRGGSPMSTHIARKVVQSFRAPTAATPPPEHNLST 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RE L G+ +EIAEKLG+S TV+ Y+ KL R +A+AK Sbjct: 155 REQEVLDCLSQGFLYKEIAEKLGISYETVHTYIRRIYEKLQVRTRTEAVAK 205 >gi|306832945|ref|ZP_07466077.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|325977686|ref|YP_004287402.1| nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304424844|gb|EFM27978.1| DNA-binding response regulator [Streptococcus bovis ATCC 700338] gi|325177614|emb|CBZ47658.1| Nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 198 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + L+++E LQL Sbjct: 94 AGVDAYVLKDRSTSELMTTIHTVLAGKKEY----SPELMETMMTQDNPLSQQEKRILQLI 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIA+ L LS TV Y+ S KL A NR++A A G++ Sbjct: 150 SLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNRVEAARIAEEHGWV 198 >gi|239637871|ref|ZP_04678832.1| DNA-binding response regulator, LuxR family [Staphylococcus warneri L37603] gi|239596434|gb|EEQ78970.1| DNA-binding response regulator, LuxR family [Staphylococcus warneri L37603] Length = 207 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + +G + ++ + L++RET L+ Sbjct: 98 GADGYEMKDVEPQKLIETIHNVLNGKRIIHPDAKHVIDSMSSKPHFTNKLSKRETEVLKE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIA L +S T+ ++ KL +R QA A+ I Sbjct: 158 MVKGKTNKEIANTLFVSEKTIKTHVSHIFSKLQVSDRTQAAIYAMENKLI 207 >gi|297567226|ref|YP_003686198.1| LuxR family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296851675|gb|ADH64690.1| two component transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 212 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQ 183 GY++ ++ L+ + + G L + + +LT RET L+ Sbjct: 101 AGAMGYLLKDTDAAALSEAIHAASRGEVRLHPEAAKRLMREVRTPEMRESLTPRETEILK 160 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G++++ IA + + TV A++ S KL +R QA A++ G + Sbjct: 161 LLAQGHSNKHIARETKVEERTVKAHVSSILAKLGLSSRTQAALFALKEGLV 211 >gi|294085444|ref|YP_003552204.1| LuxR family two component transcriptional regulator [Candidatus Puniceispirillum marinum IMCC1322] gi|292665019|gb|ADE40120.1| two component transcriptional regulator, LuxR family [Candidatus Puniceispirillum marinum IMCC1322] Length = 207 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 56/112 (50%), Gaps = 2/112 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G++ ++ L + + + A G + + + +++ K ++ L++RE Sbjct: 95 LRLGAAGFLPYSMTSDALLSALRLMASGEIFIPVSVAEHVQIAKPSTAKDTFLSKREREV 154 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G+++++IAE++GLS T+ +L S KL A NR A +AI G Sbjct: 155 LDGLLSGHSNKQIAERIGLSEVTIKYHLKSLRSKLGARNRTHAALRAIELGI 206 >gi|298249444|ref|ZP_06973248.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547448|gb|EFH81315.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 236 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 22/132 (16%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-------------------- 163 L GY++ LA + + G YQ+ +E Sbjct: 106 LRTGARGYLLKDMPVADLAKAIFAASRG-VYQLDAAVIERIVAPVGATIKPTTEQPLAPS 164 Query: 164 -FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + S LT RE L+L G T+ E+AE+L +S TV +L + +L +R Sbjct: 165 PTRTGSVTEARLTRREQEILRLVATGATNREVAERLVISEGTVKNHLANLFSRLGLRDRT 224 Query: 223 QAIAKAIRFGYI 234 QA+ G + Sbjct: 225 QAVLYTREQGLL 236 >gi|163848683|ref|YP_001636727.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|163669972|gb|ABY36338.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] Length = 890 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 6/112 (5%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQ-VITDFLELFKK-----RSSAARNLTERETSCL 182 NGYV E ++ + H + + L F K +SS LTERE L Sbjct: 778 NGYVRIFLEEGEEMRHLLTQIHRLRRDDFVAELLAAFGKPAQVVQSSLIEPLTEREIEVL 837 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +G ++ EIAEKL LSV TV ++ KL+ +R++A A G + Sbjct: 838 RLIAEGLSNPEIAEKLVLSVGTVKTHVKHIYGKLNVDDRVKAAGMARELGLL 889 >gi|307310532|ref|ZP_07590180.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|306909427|gb|EFN39922.1| transcriptional regulator, LuxR family [Escherichia coli W] gi|323183401|gb|EFZ68798.1| transcriptional regulator, LuxR family protein [Escherichia coli 1357] Length = 147 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT RE+ Sbjct: 34 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNRESEI 92 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS TV + + KLD + I+ I A+R G Sbjct: 93 LQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMG 143 >gi|157157590|ref|YP_001464190.1| LuxR family transcriptional regulator [Escherichia coli E24377A] gi|209920305|ref|YP_002294389.1| hypothetical protein ECSE_3114 [Escherichia coli SE11] gi|300815723|ref|ZP_07095947.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300820647|ref|ZP_07100798.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300906614|ref|ZP_07124305.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|301302994|ref|ZP_07209121.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|309793907|ref|ZP_07688332.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|331678834|ref|ZP_08379508.1| putative 2-component transcriptional regulator [Escherichia coli H591] gi|157079620|gb|ABV19328.1| transcriptional regulator, LuxR family [Escherichia coli E24377A] gi|209913564|dbj|BAG78638.1| conserved hypothetical protein [Escherichia coli SE11] gi|300401653|gb|EFJ85191.1| transcriptional regulator, LuxR family [Escherichia coli MS 84-1] gi|300526911|gb|EFK47980.1| transcriptional regulator, LuxR family [Escherichia coli MS 119-7] gi|300531652|gb|EFK52714.1| transcriptional regulator, LuxR family [Escherichia coli MS 107-1] gi|300841658|gb|EFK69418.1| transcriptional regulator, LuxR family [Escherichia coli MS 124-1] gi|308122314|gb|EFO59576.1| transcriptional regulator, LuxR family [Escherichia coli MS 145-7] gi|315256718|gb|EFU36686.1| transcriptional regulator, LuxR family [Escherichia coli MS 85-1] gi|323160002|gb|EFZ45966.1| transcriptional regulator, LuxR family protein [Escherichia coli E128010] gi|323162555|gb|EFZ48405.1| transcriptional regulator, LuxR family protein [Escherichia coli E128010] gi|323163404|gb|EFZ49231.1| transcriptional regulator, LuxR family protein [Escherichia coli E128010] gi|324021194|gb|EGB90413.1| transcriptional regulator, LuxR family [Escherichia coli MS 117-3] gi|331073664|gb|EGI44985.1| putative 2-component transcriptional regulator [Escherichia coli H591] Length = 148 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT RE+ Sbjct: 35 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNRESEI 93 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS TV + + KLD + I+ I A+R G Sbjct: 94 LQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMG 144 >gi|134103787|ref|YP_001109448.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005755|ref|ZP_06563728.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916410|emb|CAM06523.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 224 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA--ARNLTE 176 +GY++ ++ L + V A G V+ ++ + S A LT+ Sbjct: 99 AGASGYLVKSASVDELVDAVQRTAAGDAVFTAGLAGLVLGEYRRMAVTPDSGDRAPQLTD 158 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L+ G T+ +IA KL +S TV ++ S KL NR++ AI G Sbjct: 159 RETEVLRQVAKGLTARQIANKLVISHRTVENHVQSTLRKLQLHNRVELARYAIEHGL 215 >gi|320007212|gb|ADW02062.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 223 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSS-AARNLT 175 L +G+V+ + L GA +I ++L+ + R +T Sbjct: 103 LKAGASGFVLKSVADRDLVEACRAAMRDEPFLYPGAVTALIRNYLDRVRDGGDVPDRAIT 162 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L +G++S+EIA L +SV TV + + KL +R++ AIR G I Sbjct: 163 EREEEILKLVAEGHSSKEIAGMLVISVKTVERHRANLLQKLGLRDRLELTRYAIRAGLI 221 >gi|229145112|ref|ZP_04273504.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24] gi|228638310|gb|EEK94748.1| Two-component protein Kinase [Bacillus cereus BDRD-ST24] Length = 304 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 10/119 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLE------LFKKRSSAAR-NLTE 176 +GYV+ + + LA + + G + + E LF+ RS L++ Sbjct: 186 GADGYVLKSIDSRELAESIRLVYRGGAMITHDLFHRMWEENKETGLFESRSDGIEYGLSK 245 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L G + IA L LS TV Y + KL NR +A+ KA G + Sbjct: 246 RELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDIGLLS 304 >gi|15805459|ref|NP_294155.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6458112|gb|AAF10009.1|AE001902_9 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 214 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSA-ARNLTER 177 GY++ ++ L + + A G V+ DF + ++ S +L ER Sbjct: 95 AGARGYILKDADAGTLIDAITRVAAGEALLDADMAQNVLDDFRDKREELPSEKHADLNER 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ET L+L G+++++IA +L +S TV L KL NR QA AIR G Sbjct: 155 ETMILKLLAQGFSNQDIALRLDISEKTVRNRLSEIFTKLQLNNRTQAALYAIREGI 210 >gi|88807485|ref|ZP_01122997.1| transcriptional regulator, LuxR family protein [Synechococcus sp. WH 7805] gi|88788699|gb|EAR19854.1| transcriptional regulator, LuxR family protein [Synechococcus sp. WH 7805] Length = 227 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 42/98 (42%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 + A G Y +R L+ERE L++ G T++EIA Sbjct: 130 GIDGDFIRSLSAIAEGGNYYPQDVQTAAGYERIEVLPELSEREIEVLKVLSCGMTNKEIA 189 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + L +S TV ++ S K+ +R QA+ KAI+ G Sbjct: 190 DTLFVSAETVKTHVSSIIGKMGVKDRTQAVIKAIKAGI 227 >gi|327251604|gb|EGE63290.1| transcriptional regulator, LuxR family protein [Escherichia coli STEC_7v] Length = 148 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT RE+ Sbjct: 35 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNRESEI 93 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS TV + + KLD + I+ I A+R G Sbjct: 94 LQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMG 144 >gi|315222040|ref|ZP_07863951.1| response regulator receiver domain protein [Streptococcus anginosus F0211] gi|315189006|gb|EFU22710.1| response regulator receiver domain protein [Streptococcus anginosus F0211] Length = 199 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + ++ L+ +E LQ A Sbjct: 95 ADVDAYVLKERSIADLMKTIHTVLDGKKEY----SPELMEVMMTSKNPLSNQEILVLQAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S+EIA+KL LS TV Y+ S KL A NR++A+ A G+I Sbjct: 151 ARGLSSKEIAQKLYLSNGTVRNYMSSILTKLAAENRLEAVRIAQENGWI 199 >gi|108797570|ref|YP_637767.1| two component LuxR family transcriptional regulator [Mycobacterium sp. MCS] gi|119866657|ref|YP_936609.1| two component LuxR family transcriptional regulator [Mycobacterium sp. KMS] gi|126433193|ref|YP_001068884.1| two component LuxR family transcriptional regulator [Mycobacterium sp. JLS] gi|108767989|gb|ABG06711.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. MCS] gi|119692746|gb|ABL89819.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. KMS] gi|126232993|gb|ABN96393.1| two component transcriptional regulator, LuxR family [Mycobacterium sp. JLS] Length = 215 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN-LT 175 L +GYV+ + L G A +I D+L + LT Sbjct: 95 LKAGASGYVLKSVADRDLLAACRATLRGEPFLYAGAVTALIRDYLHRARSGDELPDTILT 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +GY++ EIA L +S TV+ + + KL +R+ AIR G I Sbjct: 155 PREEEVLKLVAEGYSTREIAATLSISAKTVDRHRANILAKLGLRDRLALTRYAIRAGLI 213 >gi|330897589|gb|EGH29008.1| LuxR response regulator receiver [Pseudomonas syringae pv. japonica str. M301072PT] Length = 222 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 7/118 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTER 177 GY++ + + + + A G +++ E ++ L R Sbjct: 98 SAGAVGYLLKDASRDEVIDGLQRVARGEEALNSAVSARLLRRMTERNTSGAALPETLPPR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L L G+++ EI EKLG++ T A++ KL A +R QA + + G + Sbjct: 158 ERQVLGLVAGGFSNREIGEKLGITTGTAKAHVEKVIGKLGASDRTQAAVRGVALGLVS 215 >gi|266631096|emb|CBH32096.1| putative two-component response regulator [Streptomyces albaduncus] Length = 201 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ S L + + A G + + D + LT+RE L+ Sbjct: 94 LNIGVAGFLHKDSPPEKLVSAIRDLAAG---RRVIDADLAMSAWQTPLPPLTDRELEVLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G IA +L LS TV YL + KL+A R+ A+ A G++ Sbjct: 151 LTATGEAVPAIATRLHLSPGTVRNYLTTVESKLNARTRVDAVRIATDAGWL 201 >gi|256389903|ref|YP_003111467.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356129|gb|ACU69626.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 190 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 3/106 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +G+++ T+ L + A G +V+ L + A LT RE L+ G Sbjct: 88 DGFLLKTAPPEELTAAIRTVAAGG--RVLDPTLAV-TAWDLAENPLTPRERDVLRELAGG 144 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA L LS TV L + KL+A NR A+ A G++ Sbjct: 145 AEPPEIAATLHLSTGTVRNVLTAIVGKLNARNRTDAVRIARDAGWV 190 >gi|256833092|ref|YP_003161819.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] gi|256686623|gb|ACV09516.1| two component transcriptional regulator, LuxR family [Jonesia denitrificans DSM 20603] Length = 233 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 49/123 (39%), Gaps = 14/123 (11%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--------------RSSAA 171 +G+++ + + N + G + L + ++S Sbjct: 107 AGASGFLLKDAPPEEMLNAIRTVYSGDAVIAPSTTKRLLGRMITPLPTETLESSPQASTI 166 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT+RE + L G ++ EIA +L ++ TV ++G K A +R+Q + A Sbjct: 167 ASLTDRERDVMLLIAKGKSNTEIARELFVAEATVKTHVGRILQKFGARDRVQIVVAAYEN 226 Query: 232 GYI 234 G + Sbjct: 227 GLV 229 >gi|223935686|ref|ZP_03627602.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895694|gb|EEF62139.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 207 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 5/109 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR--NLTERE 178 L GY++ + L+ + G + ++ F + + +L++RE Sbjct: 95 LAAGACGYLLKRTSRGELSQAIKQVYDGGSPMSSHIARKVVQYFHQVPAPNEIASLSKRE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L GY +EIA++L +S+ TV +L S KL +R A+ K Sbjct: 155 EEVLHHLAQGYLYKEIADRLSISIDTVRKHLNSIYNKLHVHSRTDAVVK 203 >gi|21654819|gb|AAK76734.1| quorum sensing regulator SprR [Serratia proteamaculans] Length = 249 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 59/220 (26%), Gaps = 25/220 (11%) Query: 40 SALDFPRRQQLICELHNYD--LDSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQ 90 ++L P + N L P+ ++ Y D + P W Sbjct: 24 ASLGSPAYAYTVVRKKNPSDVLIISSYPDEWVDLYRVNNFQLTDPVILTAFKRTSPFTWD 83 Query: 91 SIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI------FTSEFLMLANE 144 + + L G F + + + + Sbjct: 84 E-NITLMSDLKFTKIFSLSKRYNIVNGFTFVLHDHMNNLALLSVIIDNNKQGALEERLSS 142 Query: 145 VIIEAHGACYQVITDFLELFKKRSSAARN---------LTERETSCLQLAGDGYTSEEIA 195 + L SS+ + T RE L A G T EIA Sbjct: 143 ERGTMQMLLIDINEQMYRLAGSVSSSRQRHHADEDKPIFTPRENEVLYWASMGKTYGEIA 202 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +S+ TV ++G+ VKL N QAI + I Sbjct: 203 TIASISLSTVKFHMGNIVVKLGVSNARQAIRLGVELELIT 242 >gi|256785392|ref|ZP_05523823.1| two-component system response regulator [Streptomyces lividans TK24] gi|289769288|ref|ZP_06528666.1| two-component system response regulator [Streptomyces lividans TK24] gi|289699487|gb|EFD66916.1| two-component system response regulator [Streptomyces lividans TK24] Length = 204 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + +++ + LA V G + + D + A LT+RE L+ A Sbjct: 100 GADAFLVKDAPAAQLAEAVRRVLAG---ERVIDPTLAAAALAEGANPLTDREREILRAAA 156 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ E+A L LS TV YL +A KL NR +A+ A G++ Sbjct: 157 DGSTNAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVARNKGWL 204 >gi|134100725|ref|YP_001106386.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] gi|133913348|emb|CAM03461.1| response regulator, two-component system [Saccharopolyspora erythraea NRRL 2338] Length = 202 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 38/114 (33%), Positives = 57/114 (50%), Gaps = 2/114 (1%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETS 180 L +G ++ + L + V AHG + + + LT+RE Sbjct: 89 TLDAGVDGCLLKDAGATDLVSAVHQAAHGIPIFDPRVGERAAPRMRSRLHDTGLTQREYD 148 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ A G T+ EIA++LGL+ HTV YL +A KL+A NRI+ IAKA + G + Sbjct: 149 VLRHAAAGRTNPEIADQLGLTRHTVTGYLRNAMRKLNARNRIELIAKAAQSGLL 202 >gi|89897364|ref|YP_520851.1| hypothetical protein DSY4618 [Desulfitobacterium hafniense Y51] gi|89336812|dbj|BAE86407.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 212 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK-RSSAARNLTERET 179 L GYV+ + + N + G + ++ + +++ A LTERE Sbjct: 96 LKIGAAGYVLKRAAADEVVNAIRATYQGRSFLDPEIADIVVNAYRQGNEDAYETLTERER 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G+T+ EIA L +S TV+ + + KL ++++ A++ G I Sbjct: 156 EILILLAKGHTNNEIAPILNISSKTVDYHRSNLMKKLSLHSKVELTKYALKRGLI 210 >gi|309791785|ref|ZP_07686273.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] gi|308226191|gb|EFO79931.1| two component transcriptional regulator, LuxR family [Oscillochloris trichoides DG6] Length = 205 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE------AHGACYQVITDFLELFKKRSSAARNLTER 177 L N Y++ ++ L + + G+ + D L + +AA LT R Sbjct: 83 LRAGANAYLLKDADASELIEAIRVVHRGDATLAGSAAARVLDLLRRGEGAVAAADLLTPR 142 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L L G + IA KL LS TV L KL NR QA A++ G + Sbjct: 143 ERDILALLAQGDDNRAIALKLSLSEKTVGNRLSEIFQKLGVSNRTQAAIVAVQRGLV 199 >gi|290960916|ref|YP_003492098.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260650442|emb|CBG73558.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 210 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G+++ LA + G + D S+ LT+RE L Sbjct: 103 MDAGAAGFLVKDGPVEELAQAIRRVLTGET---VVDPALAAAALSAGPNPLTDRERDTLN 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + DG T +IA +L LS TV +L SA K NR++A+ +A + G++ Sbjct: 160 ASADGATVADIAARLHLSESTVRNHLSSAIGKTGTRNRMEAMREARQQGWL 210 >gi|302524582|ref|ZP_07276924.1| two component system response regulator [Streptomyces sp. AA4] gi|302433477|gb|EFL05293.1| two component system response regulator [Streptomyces sp. AA4] Length = 215 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 LG +G+++ + L V A GA + +VIT R++ AR Sbjct: 94 LGLGASGFLLKAGDPRELLAGVHAVADGAAFLSPKVAHRVITRLSGNRFSRAATARERVS 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G ++ +IA ++ + TV A++ + +LD NR+QA A G Sbjct: 154 VLTNREREVLVLLAEGLSNADIAARMFVVEGTVKAHVSTILTRLDVRNRVQAAITAFEAG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|257057243|ref|YP_003135075.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587115|gb|ACU98248.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 216 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC------YQVITDFLELFKKRSSAAR----N 173 L F NG+++ E +ML + A G + + ++ S+ AR + Sbjct: 95 LRFGANGFLLKDIEPIMLVRAIRDLARGGAVLDPGVAARMVNAHRDGQRASAPARELLAS 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + L G G ++ EI +L LS TV Y+ + K+ A NR+QA A R G Sbjct: 155 LSDREREVVTLIGQGLSNAEIGGRLHLSEATVKGYVSAVLSKIGAANRVQAALLAYRGGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|21220978|ref|NP_626757.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|6752360|emb|CAB69738.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 227 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLE---LFKKRSSAARN 173 L +G+++ + L + G ++I FL S Sbjct: 93 LRAGASGFLVKDTRPAELLEAIRTVTAGDALLSPGPTARLIERFLRSPSALHPPGSGPDC 152 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L L G + EIAE LGLS T ++ KL+A +R Q + A G Sbjct: 153 LSERERQVLTLVARGLNNTEIAEALGLSPLTAKTHVSRIMGKLEARDRAQLVIVAYESGL 212 Query: 234 IC 235 + Sbjct: 213 VT 214 >gi|311695311|gb|ADP98184.1| regulatory protein, LuxR [marine bacterium HP15] Length = 900 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 4/102 (3%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + T F L EA G +++ E+ + A ++ERE L+L G +++ Sbjct: 803 LMTKGFGQLPEGAFKEALGEVFEL----REVAGTLDTLAEPISEREQGVLELIAKGLSNQ 858 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA+KL +S+HTV + KL+ +R QAI +A G + Sbjct: 859 EIADKLHISLHTVKTHARRINAKLEVKSRTQAIVRARELGLL 900 >gi|256787861|ref|ZP_05526292.1| two-component system response regulator [Streptomyces lividans TK24] gi|289771746|ref|ZP_06531124.1| two-component system response regulator [Streptomyces lividans TK24] gi|289701945|gb|EFD69374.1| two-component system response regulator [Streptomyces lividans TK24] Length = 231 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLE---LFKKRSSAARN 173 L +G+++ + L + G ++I FL S Sbjct: 97 LRAGASGFLVKDTRPAELLEAIRTVTAGDALLSPGPTARLIERFLRSPSALHPPGSGPDC 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L L G + EIAE LGLS T ++ KL+A +R Q + A G Sbjct: 157 LSERERQVLTLVARGLNNTEIAEALGLSPLTAKTHVSRIMGKLEARDRAQLVIVAYESGL 216 Query: 234 IC 235 + Sbjct: 217 VT 218 >gi|326383391|ref|ZP_08205078.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] gi|326197797|gb|EGD54984.1| response regulator receiver [Gordonia neofelifaecis NRRL B-59395] Length = 219 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 10/118 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFK---KRSSAARNLT 175 GY++ +++ L V G V+ ++ + + + +A LT Sbjct: 99 AGATGYLVKSAQRSELVAAVRATGDGQAVFTPGLAGLVLGEYRRIARSPGEADAAVPTLT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +RET L+ G +S +IA +L +S TV ++G+A KL NR++ AI G Sbjct: 159 QRETEVLRHVAKGLSSRQIATRLEISPRTVENHVGAALRKLQLGNRVELTRYAIEHGL 216 >gi|239820082|ref|YP_002947267.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] gi|239804935|gb|ACS22001.1| transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 208 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 2/110 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ L+ V A G Y +L SSA T RE L+L Sbjct: 96 DAGVRGYLLHDCSAEELSEAVRCVAEGRRYLSCPVADQLLDNLSSAVP--TARELEVLRL 153 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++I +LG+ TV A++ + KL R+ AI +A R G + Sbjct: 154 MAQGLANKDIGRRLGIGEGTVKAHVKAILRKLRKPTRVAAIGEAFRCGLL 203 >gi|158315847|ref|YP_001508355.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111252|gb|ABW13449.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 216 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 43/108 (39%), Gaps = 6/108 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSS---AARNLTERET 179 GYV+ L + A G V LE + S A L +RE Sbjct: 102 AGAAGYVLKEIRGNDLVGAIRTVASGQSLLAPSVTRRVLERLRDGPSEDPAMATLNQRER 161 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LQL DG T+ +I +LGLS TV Y+ S KL +R QA Sbjct: 162 EILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVY 209 >gi|56964906|ref|YP_176637.1| two-component response regulator of extracellular proteinase [Bacillus clausii KSM-K16] gi|56911149|dbj|BAD65676.1| two-component response regulator of extracellular proteinase [Bacillus clausii KSM-K16] Length = 219 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L GY + E +L + G V+T + LT+ Sbjct: 93 LQAGACGYQLKDVEPDVLIYTIQAANSGELPLDPRIMKHVLTHVARSANSVADKVNRLTD 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+ G +++EIA L +S TV ++ + KL+ +R QA AI+ G Sbjct: 153 REVDVLKEISTGKSNKEIAAALFISEKTVKTHVSNLLGKLELQDRTQAALFAIQAGI 209 >gi|317124103|ref|YP_004098215.1| LuxR transcriptional regulator [Intrasporangium calvum DSM 43043] gi|315588191|gb|ADU47488.1| two component transcriptional regulator, LuxR family [Intrasporangium calvum DSM 43043] Length = 238 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 54/121 (44%), Gaps = 12/121 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLEL--FKKRSSAAR---N 173 +G+++ T+ + + + A G Q+ T + +R AAR Sbjct: 118 AGADGFLLKTASPEEIRSGIRNVAAGLGAVSPKTAAQLFTRLRDDAGSAQRLDAARLVGT 177 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G ++ E+A +L +S TV +LGSA KL NR QA A R G Sbjct: 178 LTERERDVLAGLARGLSNAELARELFVSETTVKTHLGSAFAKLGVDNRAQAAVLADRAGL 237 Query: 234 I 234 + Sbjct: 238 L 238 >gi|313801796|gb|EFS43030.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|314962915|gb|EFT07015.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] Length = 218 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARNLT 175 L +G+++ ++ L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGSTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A A G I Sbjct: 152 AREIEVAKLGARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALAYESGLI 210 >gi|283786604|ref|YP_003366469.1| quorum sensing transcriptional regulator CroR [Citrobacter rodentium ICC168] gi|282950058|emb|CBG89690.1| quorum sensing transcriptional regulator CroR [Citrobacter rodentium ICC168] Length = 230 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 72/220 (32%), Gaps = 13/220 (5%) Query: 23 LIQNRIKARNFALY--TINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 LIQN + + F +Y T + ++ + N + DI + D + Sbjct: 14 LIQNELN-KVFEVYKDTTYAYAIVNKKDPSQMRIINNNPQWFDIYLERKYQFIDPVIIRA 72 Query: 81 NSGLLPIIWQSIQEETVIESSG---QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS- 136 S + W E V+ S G + G FP+ + + S Sbjct: 73 LSSVEDFYW----ENKVLLSGGYNLTRIFNESSEHNIYQGHTFPLHDYLNNLVVLSIISH 128 Query: 137 -EFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEI 194 + + Q+ L L+ K L+ RE L+ G T E+ Sbjct: 129 KDSGIDMTANRSYFMHFLVQLHQKTLNLYSKVHQKKNVFLSPRERQILKWVSAGKTYAEV 188 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L ++ TV ++ +A KL N A+ + + Sbjct: 189 SLILSITERTVKFHMSNAMKKLGVNNARHAVKLGMELRLL 228 >gi|254381845|ref|ZP_04997208.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194340753|gb|EDX21719.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 205 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + +++ + LA+ V G + + D + A LT+RE L+ A Sbjct: 100 AGASAFLVKDAPAAQLADAVRKVLAG---ERVIDPTLAAAALAEGANPLTDREREVLRAA 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ E+AE+L LS TV YL +A KL + NR +A+ A G++ Sbjct: 157 EFGATNAELAERLHLSPGTVRNYLSTAIQKLASRNRAEAVRVAREKGWL 205 >gi|261821119|ref|YP_003259225.1| LuxR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|84620008|gb|ABC59302.1| quorum-sensing transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum] gi|261605132|gb|ACX87618.1| transcriptional regulator, LuxR family [Pectobacterium wasabiae WPP163] Length = 245 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 67/196 (34%), Gaps = 26/196 (13%) Query: 62 GDIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSGQLS--VRLEGGL 112 + P + TY ++ H + +L P W ++ VI S + S L Sbjct: 48 SNYPQEWVNTYKENNYQHIDPVILTAINKVSPFSW---EDNIVINSKLKFSKIFNLSKEY 104 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-------------EVIIEAHGACYQVITD 159 G F + + + E L + ++I H + + Sbjct: 105 DIVNGYTFVLHDNNNNLAALSIMFEENALTDMENIVEKNKDKLQMLLIVIHEKITTLYKE 164 Query: 160 FLEL-FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + K+ S ++RE L A G T EIA L + + TV ++G+ KL Sbjct: 165 ITQTPQSKKQSDKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKLGV 224 Query: 219 VNRIQAIAKAIRFGYI 234 +N AI + I Sbjct: 225 LNAKHAIRLGVELQLI 240 >gi|2873371|gb|AAC38168.1| CarR [Serratia marcescens] Length = 244 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 68/192 (35%), Gaps = 21/192 (10%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 + P I+TY D + + + P W + + +++ L + Sbjct: 38 SNYPQKCIDTYIDNKLFINDPVIHYSLKRVTPFSWDDNDLAVLRSENEDVAMYLREHDIT 97 Query: 115 FAGIAFPVRLGFHKNGYVIFTS-----EFLMLANEVIIEAHGA---CYQVITDFLELFKK 166 G F + + + + +F + ++ K Sbjct: 98 V-GYTFVLHDHDNNLAILTIANNDEKNDFEDFIKNRENDLQMLLVTTHEKAMKHKHFVKG 156 Query: 167 RSSAARNL-----TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +++ L T RET L L G T +E++ LG+S TV ++ ++ KL+ +N Sbjct: 157 KTAPLDCLQSALITPRETEVLFLVSRGNTYKEVSRTLGISEATVKFHINNSVRKLNVINS 216 Query: 222 IQAIAKAIRFGY 233 AI+KA+ Sbjct: 217 RHAISKALELNL 228 >gi|288924538|ref|ZP_06418483.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288344115|gb|EFC78699.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 214 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 6/108 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKK---RSSAARNLTERET 179 GYV+ L + A G V LE + A L +RE Sbjct: 101 AGAAGYVLKEIRGNDLVGAIRTVASGQSLLAPSVTRRVLERLRDGPHEDPAMATLNQRER 160 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LQL DG T+ +I +LGLS TV Y+ S KL +R QA Sbjct: 161 EILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVY 208 >gi|256394338|ref|YP_003115902.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256360564|gb|ACU74061.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 GYV + LA V G ++ + A LT RE Sbjct: 102 AGARGYVYKDVDPAALAAAVRSVHAGHVLLEPEVATALLDSGSNGAADQGPQAPALTARE 161 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G + EIA L L+ TV ++ + +KL +R QA A+R G Sbjct: 162 REVLVLIAQGRANREIARALVLAEKTVKTHVSNILMKLGVADRTQAALWAVRHGI 216 >gi|153825393|ref|ZP_01978060.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|255746365|ref|ZP_05420312.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101] gi|262158280|ref|ZP_06029397.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1] gi|262169155|ref|ZP_06036848.1| transcriptional regulator LuxR family [Vibrio cholerae RC27] gi|262192074|ref|ZP_06050237.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93] gi|149740939|gb|EDM55016.1| transcriptional regulator, LuxR family [Vibrio cholerae MZO-2] gi|255736119|gb|EET91517.1| transcriptional regulator LuxR family [Vibrio cholera CIRS 101] gi|262022436|gb|EEY41144.1| transcriptional regulator LuxR family [Vibrio cholerae RC27] gi|262029962|gb|EEY48609.1| transcriptional regulator LuxR family [Vibrio cholerae INDRE 91/1] gi|262032056|gb|EEY50631.1| transcriptional regulator LuxR family [Vibrio cholerae CT 5369-93] gi|327485870|gb|AEA80276.1| transcriptional regulator, LuxR family [Vibrio cholerae LMA3894-4] Length = 239 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 50/161 (31%), Gaps = 5/161 (3%) Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 H P W + Q V + G+ P+ G V Sbjct: 78 PITRHIIETDRPFFWTKKPDVNR----EQYRVVAKPKGSGIHGLQIPIFGHLGLEGAVSL 133 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEE 193 + + + E L + L ++RE L L G + Sbjct: 134 GGKAIDSSPRARCELSLLSTYAFFAARRLLESSDPNRSALLSKREKEVLSLTALGRRQAD 193 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 IA LG+S T+ +L +A +KL + I AI+ G I Sbjct: 194 IAIALGVSPRTIENHLRNARLKLGGATTAETIRIAIQRGDI 234 >gi|329941768|ref|ZP_08291033.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329299485|gb|EGG43385.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 221 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NLTER 177 +G+++ +E L V G ++I +F K+ ++AA LTER Sbjct: 99 GASGFLVKDTEPAELLRAVRAVVEGDALLSPGVTRRLIAEFAARSKEPAAAASLARLTER 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L G G ++EEIA +L +S T ++ VKL A +R Q + A G + Sbjct: 159 EREVMALVGLGLSNEEIARRLVVSPLTAKIHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|300782878|ref|YP_003763169.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792392|gb|ADJ42767.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 216 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L +G+++ + L + + A G +++ +F L + +T Sbjct: 93 LRAGASGFLLKDTRPADLLAAIEVVASGDALLAPSVTRRLVAEFARLPSGPVTRLDGVTA 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L G +++EIA +L L + TV ++G KL A +R Q + A G + Sbjct: 153 REQEVLTLIARGLSNDEIAARLHLGIATVKTHIGRLLHKLAARDRAQLVIAAYESGLV 210 >gi|317154890|ref|YP_004122938.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316945141|gb|ADU64192.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 220 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 10/119 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN---LT 175 +GY+I S L + A G + +V+ ++ + S LT Sbjct: 95 AGASGYMIKESAAGNLIRGLDAVARGELFLDDALSQEVVYKLMQAKDGQGSGRDPYTTLT 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L++ +G T+ E+A KL +S TV + + KL + ++ I A R G I Sbjct: 155 AREQEVLRMLAEGMTAREVAAKLFISPKTVENHRTNLMKKLGLHSTVELIRYAARLGLI 213 >gi|269797048|ref|YP_003316503.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269099233|gb|ACZ23669.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 221 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAAR---- 172 L +G++ +E + V + A ++ ++ R+ A Sbjct: 95 LRAGASGFIGKGAEPDDIVRAVRTVHLGESLLSSAATRALVERYVHQQAPRADAWEGDGL 154 Query: 173 -NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L G T+++IA +L +S HT ++ K+D +R + A Sbjct: 155 GRLTEREREVFLLVAAGRTNQDIAAELVISTHTAKTHVNRIMTKVDVRDRAHLVILAYES 214 Query: 232 GYIC 235 G + Sbjct: 215 GLVT 218 >gi|111021179|ref|YP_704151.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|110820709|gb|ABG95993.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 223 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 GY++ ++ + V A+G + ++ + + LT+RE Sbjct: 105 AGARGYLVKGADPGEVERAVRAVANGEVILGAAVAARAMSFMAASRRVGPTVFPELTDRE 164 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L GY + I+ +L LS TV ++ + KL +R AI +A G Sbjct: 165 REVLDLVARGYDNASISRRLVLSPKTVRNHVSNVLAKLGVPDRPAAIVRARDAGL 219 >gi|260904160|ref|ZP_05912482.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brevibacterium linens BL2] Length = 207 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFK--KRSSAARNL 174 L +G+++ + + V + A G ++I++++ K K ++ L Sbjct: 84 LRAGASGFLLKDATAEDMITAVRVVAEGQSLLAPSVTRRLISEYVSGPKIAKDTAVLGQL 143 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE + L G+ + E+AE L L+ TV ++ KL +R Q + A G + Sbjct: 144 TDREIDVMTLVAKGHANAEVAEHLFLAEQTVKTHVSRILSKLGLRDRTQIVVAAYESGLV 203 Query: 235 C 235 Sbjct: 204 V 204 >gi|302540485|ref|ZP_07292827.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458103|gb|EFL21196.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 215 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 4/116 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFL-ELFKKRSSAARNLTERET 179 L NG ++ + L + + G +V E+ K R+ LT+RE Sbjct: 94 LVAGANGCLLKDASELDVGAALRALLAGQFVLDPRVAKQLAPEIIKPRTGGTVRLTDREQ 153 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L G ++ +IA++L LS TV Y+ KLDA +R++A+ + G + Sbjct: 154 EVLTLLAHGCSNRKIAQQLCLSETTVKGYVTDLLQKLDASSRLEAVVRGCELGLVA 209 >gi|29831080|ref|NP_825714.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29608194|dbj|BAC72249.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 224 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRS------SA 170 L +G+++ + LA+ V + A G ++IT+F L + +A Sbjct: 98 LRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSRLAETPRLSASVHAA 157 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERET L L G ++ EIA +L ++ T+ ++ VKL +R QA A Sbjct: 158 YGELTERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYE 217 Query: 231 FGYIC 235 + Sbjct: 218 ARLVT 222 >gi|223940658|ref|ZP_03632499.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223890670|gb|EEF57190.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 217 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 7/120 (5%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLT 175 L GY++ + L + + G Y +VI D+L + S LT Sbjct: 95 TLRAGAAGYLLKDAATAELELAIQAVSRGDTYLSPAISKRVIEDYLGRINGQKSPMEQLT 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 R+ LQL +G +++E+A L LSV TV + +L + + A+R G I Sbjct: 155 PRQREILQLIAEGKSTKEMAFLLNLSVKTVETHRTQLMDRLGIHDVPGLVRYAMRMGLIS 214 >gi|196233056|ref|ZP_03131904.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196222863|gb|EDY17385.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 209 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GYV ++E + + G Y +L +R+ A LT RE L Sbjct: 99 AGAMGYVSKSAEVEEVLEAIRCVVGGETYFPAPIASKLASRRTRDA--LTPREHQVLHHI 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA L +S TV ++ + KL +R QA A++ G I Sbjct: 157 VAGLSNKEIAAALHMSEATVKLHISNTLAKLHVADRTQAAIVAVQRGII 205 >gi|228918188|ref|ZP_04081692.1| Response regulator receiver [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841468|gb|EEM86607.1| Response regulator receiver [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 592 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 10/119 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA----------ARNLTE 176 +GY++ + + LA + + G F +++ + LT+ Sbjct: 474 GADGYLLKSIDSRELAESIRLVYRGGTMINHDLFHRMWEDKEETGLVESRLDGIEYGLTK 533 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L G + IA L LS TV Y + KL NR +A+ KA G + Sbjct: 534 RELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDKGLLS 592 >gi|21223502|ref|NP_629281.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|9967644|emb|CAC05762.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 204 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + +++ + LA V G + + D + A LT+RE L+ A Sbjct: 100 GADAFLVKDAPAAQLAEAVRRVLAG---ERVIDPTLAAAALAEGANPLTDREREILRAAA 156 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ E+A L LS TV YL +A KL NR +A+ A G++ Sbjct: 157 DGSTNAELASALHLSQGTVRNYLSTAIQKLAVRNRAEAVRVARNKGWL 204 >gi|299537605|ref|ZP_07050898.1| two-component response regulator-like protein [Lysinibacillus fusiformis ZC1] gi|298726974|gb|EFI67556.1| two-component response regulator-like protein [Lysinibacillus fusiformis ZC1] Length = 215 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 6/114 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLELFKKRSSAAR----NLTERET 179 GY + E L + G + T LE+ ++ S A LT RE Sbjct: 96 AGAAGYQLKDIEPDELVLSIRRIMRGENTLHPEATTTLEMDRQESQNAPHLLNPLTPREQ 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G ++ EIA L ++ TV ++ + KL +R QA A++ G Sbjct: 156 DVLAELTKGKSNREIASSLFVTEKTVKTHISNIFTKLQVQDRTQAALYAVKHGL 209 >gi|291003093|ref|ZP_06561066.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 233 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 9/116 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA------RNL 174 L NG+++ ++ +L VI A G ++ L F+ +A R L Sbjct: 108 LRLGANGFLLKDADPAVLVRAVIDLAAGGAVLDPRITARLLPRFRNLGDSADEVRLVRTL 167 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + RE L L DG ++ +I ++LGL+ TV +Y+ + KL A NR+QA A R Sbjct: 168 SARERQVLFLLADGRSNADIGDRLGLTEATVKSYVSTVLGKLGAENRVQAALIAQR 223 >gi|238794186|ref|ZP_04637801.1| Transcriptional activator protein echR [Yersinia intermedia ATCC 29909] gi|238726476|gb|EEQ18015.1| Transcriptional activator protein echR [Yersinia intermedia ATCC 29909] Length = 214 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 58/195 (29%), Gaps = 24/195 (12%) Query: 63 DIPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 PN + Y D + P W + E L Sbjct: 16 SYPNEWADIYTTHNYQLIDPVVLTAFRRFSPFSWDE-NITVLSELKLSKIFALSKKYNIV 74 Query: 116 AGIAFPVRLGFHKNGYVIFTSEFL-------------MLANEVIIEAHGACYQVITD--- 159 G F + + + + V+IE H + + Sbjct: 75 NGFTFVLHDTMNNLAMLSLIMDDDVQKEVEGRVVNDRDRLQMVLIETHEKMLTLSQNKIN 134 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 L L S+ L+ RE L A G T +EIA G++ TV ++G+ KL + Sbjct: 135 VLGLKGTGISSKTLLSPRENEVLHWASMGKTYQEIALITGITSRTVKYHIGNVVKKLGVI 194 Query: 220 NRIQAIAKAIRFGYI 234 N QAI + I Sbjct: 195 NAKQAIRLGVELELI 209 >gi|297243640|ref|ZP_06927571.1| response regulator of two-component system [Gardnerella vaginalis AMD] gi|296888391|gb|EFH27132.1| response regulator of two-component system [Gardnerella vaginalis AMD] Length = 260 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 39/68 (57%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +SA LT+RE L G +++EIA+KL +S+ TV ++ K+DA +R+QA+ Sbjct: 191 ENSAIPELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIDARDRVQAVV 250 Query: 227 KAIRFGYI 234 A G + Sbjct: 251 FAYENGLV 258 >gi|302549529|ref|ZP_07301871.1| two component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302467147|gb|EFL30240.1| two component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 221 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NLTER 177 +G+++ +E L V G ++I +F K+ ++A +LTER Sbjct: 99 GASGFLVKDTEPDELLRAVRAVVAGDALLSPGVTRRLIGEFAARSKEPAAADALASLTER 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L G G ++ EIA +L +S T ++ VKL+A +R Q + A G + Sbjct: 159 EREVMALVGIGLSNGEIARRLVVSPLTAKTHVSRTMVKLNARDRAQLVVLAYESGLV 215 >gi|238759424|ref|ZP_04620588.1| Two component transcriptional regulator, LuxR family [Yersinia aldovae ATCC 35236] gi|238702321|gb|EEP94874.1| Two component transcriptional regulator, LuxR family [Yersinia aldovae ATCC 35236] Length = 202 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE +L + A G + +L ++ + LTERE L Sbjct: 91 DAGADGYLLKDSEPEILLENIRQAAAGENVFSNEVAQYLSSRHEQVNPFSELTERELDVL 150 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 Q G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 151 QEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 192 >gi|119717710|ref|YP_924675.1| response regulator receiver [Nocardioides sp. JS614] gi|119538371|gb|ABL82988.1| response regulator receiver [Nocardioides sp. JS614] Length = 229 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-------SSAARNLTERE 178 +G+++ + +MLA+ + G TD L R A LT++E Sbjct: 110 HGASGFLLKGTTPVMLADAIRTVHAGNAVLAPTDLTTLLDGRLRSQAPLPPAYLTLTDKE 169 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA + LS TV ++G+ KL +R+Q + A G + Sbjct: 170 REVFTAVARGLSNTEIAGLVFLSESTVKTHVGAILRKLGLRDRVQIVVFAYEHGLV 225 >gi|89893086|ref|YP_516573.1| hypothetical protein DSY0340 [Desulfitobacterium hafniense Y51] gi|89332534|dbj|BAE82129.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 234 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARNLTE 176 L +GY++ ++ L N + HG Y +I +F + + + +LT Sbjct: 114 LQAGASGYILKSAYDNDLINAIRTIYHGNAYLGPSITKTLIHEFAQRSLHGNESGTDLTV 173 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE + L L GY+++EIAE+L +SV TV +Y KL+ R + + A++ G Sbjct: 174 REQNFLSLMAMGYSNKEIAEELSVSVKTVESYRSKIKDKLNLKTRHELVRYALKKGL 230 >gi|68536744|ref|YP_251449.1| two-component system response regulator TcsR7 [Corynebacterium jeikeium K411] gi|68264343|emb|CAI37831.1| two-component system response regulator TcsR7 [Corynebacterium jeikeium K411] Length = 227 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 49/122 (40%), Gaps = 13/122 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSA----------AR 172 +G+++ ++ L + V A + L + + Sbjct: 96 AGASGFLLKDTDPEDLISAVRTVGDSAAVISPKATARLLRSIRMEQTPQRREPVELDLPD 155 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE LQL G +++EIA+KL +S+ TV ++G K + +R+ + A + Sbjct: 156 PLTPRELEILQLIALGLSNQEIADKLYISLPTVKTHVGRVLTKTQSRDRVHVVLFAFKHH 215 Query: 233 YI 234 + Sbjct: 216 LV 217 >gi|261404151|ref|YP_003240392.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|261280614|gb|ACX62585.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] Length = 201 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA+ + G +VI EL L+ RE ++LA Sbjct: 96 AGVYGYLLKDTGSEELADAIRRVYDGK--RVINS--ELSLAIWDDPCPLSPREREVMKLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++I +L LS TV Y+ A KL A RI+AI A G++ Sbjct: 152 AQGLVLQDIGAQLFLSYGTVRNYMSEAIGKLGANTRIEAIDIARSKGWL 200 >gi|170721041|ref|YP_001748729.1| LuxR family transcriptional regulator [Pseudomonas putida W619] gi|169759044|gb|ACA72360.1| transcriptional regulator, LuxR family [Pseudomonas putida W619] Length = 82 Score = 97.0 bits (240), Expect = 2e-18, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 36/74 (48%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ ++ LT RE L G +S EI + L TVN ++G+ K D R Sbjct: 7 QIEDSQADTPIRLTPREQQVLLWCAYGKSSWEIGQILQCQESTVNFHVGNILRKFDVSTR 66 Query: 222 IQAIAKAIRFGYIC 235 + A+ KAIR+G + Sbjct: 67 VAAVIKAIRYGMLA 80 >gi|196230226|ref|ZP_03129089.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196225823|gb|EDY20330.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 211 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 8/111 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L +GY++ +S L + G QV+ F E + + + +L+ Sbjct: 95 LRAGASGYLLKSSPPQRLFAAIRDVQEGGAPLSSHIARQVVQHFHE-EGRLARESHHLSP 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RE L+L GY +EIA++L + + TV ++ + K+ +R++A+A+ Sbjct: 154 REAEVLELLAAGYIYKEIADRLQIGLETVRTHVKNICAKMHVRSRVEAVAR 204 >gi|331699447|ref|YP_004335686.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954136|gb|AEA27833.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 211 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 6/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK------KRSSAARNLTER 177 L G+++ + +L V A G + + L + R + L+ R Sbjct: 94 LRAGACGFLLKDAGPRLLVEAVRAAAAGDALVSPSVTVRLLRHLTTPAPRPTLPEPLSPR 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E ++ G T+ EIA L +S+ TV +L + KL A NR++ A A G + Sbjct: 154 EIDVVRAVARGRTNAEIAADLFVSLSTVKTHLTNVQAKLGARNRVEVAAWAWEHGLVS 211 >gi|315283654|ref|ZP_07871783.1| transcriptional regulatory protein DegU [Listeria marthii FSL S4-120] gi|313612706|gb|EFR86719.1| transcriptional regulatory protein DegU [Listeria marthii FSL S4-120] Length = 69 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI+ G+ Sbjct: 6 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGW 65 Query: 234 I 234 + Sbjct: 66 V 66 >gi|21902157|gb|AAM78432.1|AF425991_3 putative two-component response regulator [Streptomyces coelicolor A3(2)] Length = 217 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLE---LFKKRSSAARN 173 L +G+++ + L + G ++I FL S Sbjct: 93 LRAGASGFLVKDTRPAELLEAIRTVTAGDALLSPGPTARLIERFLRSPSALHPPGSGPDC 152 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L L G + EIAE LGLS T ++ KL+A +R Q + A G Sbjct: 153 LSERERQVLTLVARGLNNTEIAEALGLSPLTAKTHVSRIMGKLEARDRAQLVIVAYESGL 212 Query: 234 IC 235 + Sbjct: 213 VT 214 >gi|186685215|ref|YP_001868411.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186467667|gb|ACC83468.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 239 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 38/64 (59%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE LQL +G ++ IAE+L ++V TV ++ + KL A +R QA +A+R Sbjct: 175 PYTLTERELEVLQLIVEGCSNALIAERLYITVGTVKTHVRNILNKLCADDRTQAAVRALR 234 Query: 231 FGYI 234 G + Sbjct: 235 SGLV 238 >gi|307311542|ref|ZP_07591183.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307318897|ref|ZP_07598328.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306895311|gb|EFN26066.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306899559|gb|EFN30188.1| transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 210 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 G + + F V G + ++ E ++L+ E + + V + ++ R Sbjct: 88 RGVSRSYCAVTFSV--GRTRFSLMLLFPEDVILSQEALRDIAVLAGYVASHKIK-ADVRH 144 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A Sbjct: 145 DRECELTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHA 204 Query: 229 IRFGYI 234 +R + Sbjct: 205 VRNNLV 210 >gi|296503059|ref|YP_003664759.1| two-component protein kinase [Bacillus thuringiensis BMB171] gi|296324111|gb|ADH07039.1| two-component protein kinase [Bacillus thuringiensis BMB171] Length = 319 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 10/119 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLE------LFKKRSSAAR-NLTE 176 +GYV+ + + LA + + G + + E LF+ RS L++ Sbjct: 201 GADGYVLKSIDSRELAESIRLVYRGGAMITHDLFHRMWEENKETGLFESRSDGIEYGLSK 260 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L G + IA L LS TV Y + KL NR +A+ KA G + Sbjct: 261 RELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDIGLLS 319 >gi|328881870|emb|CCA55109.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 229 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 52/128 (40%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFL----------ELFKK 166 L +G++ +E L + I G +I FL E + Sbjct: 97 LRAGASGFLGKGAEPEELLGAIRIAHAGEALLSPAATKGLIATFLAQGPGAEAVGEAGRA 156 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RS LT RE L L G +++EIAE+L +S TV ++ A KL A +R Q + Sbjct: 157 RSERLAALTAREREVLVLVAGGLSNDEIAERLDVSPLTVKTHVNRAMAKLGARDRAQLVV 216 Query: 227 KAIRFGYI 234 A G + Sbjct: 217 TAYESGLV 224 >gi|311029481|ref|ZP_07707571.1| two-component response regulator [Bacillus sp. m3-13] Length = 214 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 5/120 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSS-AARNL 174 FP + Y++ T+ + + +V + + F+ S +L Sbjct: 92 VFPA-IEAGAYSYLLKTARAEDIIKAIEKAVQNEPVIEPKVASKMMNRFRSPSKLPHDDL 150 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L GDG T++EI+E+L + + TV ++ + KL +R QA A R G + Sbjct: 151 TDRELEVLMCLGDGLTNQEISEELFIGIKTVKTHVSNILGKLQVADRTQAAIYANRHGVL 210 >gi|300788715|ref|YP_003769006.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299798229|gb|ADJ48604.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ + LA+ V G + + D + LT RE L+ Sbjct: 94 LDAKVGGFLLKDAPPDKLASAVRGVLAG---RRMVDGDLALAAWDTVDCPLTARELDVLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + GY + E+A +L LS TV YL + KL+A NR+ AI A G++ Sbjct: 151 MVAQGYGTVEVAARLYLSAGTVRNYLTTVVAKLNARNRVDAIRIAEESGWL 201 >gi|255025548|ref|ZP_05297534.1| two-component response regulator DegU [Listeria monocytogenes FSL J2-003] Length = 117 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 23/61 (37%), Positives = 34/61 (55%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL DG ++ I E L +S TV ++ S K+ +R QA+ AI+ G+ Sbjct: 54 LTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGW 113 Query: 234 I 234 + Sbjct: 114 V 114 >gi|260430667|ref|ZP_05784639.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157] gi|260418108|gb|EEX11366.1| positive regulator AgmR [Silicibacter lacuscaerulensis ITI-1157] Length = 204 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCL 182 L G+V T L N + A G Y + + A+ LTERE L Sbjct: 93 LELGAAGFVPKTLPAKSLVNAIRFMAMGEQYLPVGFMSAEQPNDTHPMAKKLTERERQVL 152 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + +G +++EIA L LS T+ ++ + K+ NR QA A G Sbjct: 153 KGLTEGKSNKEIARDLDLSEPTIKLHVKTLYRKVGVSNRTQAAMAAREAGL 203 >gi|50120496|ref|YP_049663.1| quorum-sensing transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49611022|emb|CAG74467.1| quorum-sensing transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 245 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 68/196 (34%), Gaps = 26/196 (13%) Query: 62 GDIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSGQLS--VRLEGGL 112 + P ++TY ++ H + +L P W ++ VI S + S L Sbjct: 48 SNYPQEWVDTYKENNYQHIDPVILTAINTVSPFSW---EDNIVINSKLKFSKIFNLSKEY 104 Query: 113 LPFAGIAFPVRLGFHKNGYVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFKK 166 G F + + + ++ + E + L+K+ Sbjct: 105 DIVNGYTFVLHDNNNHLAALSIMFEEHAPTDMESIVEENKDKLQMLLIATHEKITTLYKE 164 Query: 167 RSSAARN--------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + ++ ++RE L A G T EIA L + + TV ++G+ KL Sbjct: 165 MTQSPQSKKQGDKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKLGV 224 Query: 219 VNRIQAIAKAIRFGYI 234 +N AI + I Sbjct: 225 LNAKHAIRLGVELQLI 240 >gi|15803376|ref|NP_289409.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 EDL933] gi|261226155|ref|ZP_05940436.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261256590|ref|ZP_05949123.1| putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. FRIK966] gi|300950599|ref|ZP_07164501.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|300958180|ref|ZP_07170334.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|301026137|ref|ZP_07189611.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|301643812|ref|ZP_07243849.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|331643538|ref|ZP_08344669.1| DNA-binding response regulator, LuxR family [Escherichia coli H736] gi|12517351|gb|AAG57968.1|AE005514_5 putative 2-component transcriptional regulator [Escherichia coli O157:H7 str. EDL933] gi|887806|gb|AAA83037.1| ORF_f148 [Escherichia coli] gi|299879832|gb|EFI88043.1| transcriptional regulator, LuxR family [Escherichia coli MS 196-1] gi|300315132|gb|EFJ64916.1| transcriptional regulator, LuxR family [Escherichia coli MS 175-1] gi|300450079|gb|EFK13699.1| transcriptional regulator, LuxR family [Escherichia coli MS 116-1] gi|301077845|gb|EFK92651.1| transcriptional regulator, LuxR family [Escherichia coli MS 146-1] gi|315137458|dbj|BAJ44617.1| putative 2-component transcriptional regulator [Escherichia coli DH1] gi|323935789|gb|EGB32092.1| luxR family protein Bacterial regulatory protein [Escherichia coli E1520] gi|331037009|gb|EGI09233.1| DNA-binding response regulator, LuxR family [Escherichia coli H736] Length = 148 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT RE+ Sbjct: 35 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNRESEI 93 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS TV + + KLD + I+ I A+R G Sbjct: 94 LQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMG 144 >gi|318060318|ref|ZP_07979041.1| LuxR family two component transcriptional regulator [Streptomyces sp. SA3_actG] gi|318079909|ref|ZP_07987241.1| LuxR family two component transcriptional regulator [Streptomyces sp. SA3_actF] Length = 222 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR---- 172 L +G+++ ++ + V + A G A ++I + R++ A+ Sbjct: 94 LAAGADGFLLKDADPAEILRAVHLVAAGSAMLHPAAARRLIDRYHHANGPRATHAQARTA 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G T+ +IA +LG+ TV A++ L+ NR+QA A G Sbjct: 154 PLTPRERDVLALLAEGETNADIARRLGMRESTVKAHVSRILTALEVTNRVQAALVARDAG 213 Query: 233 Y 233 Sbjct: 214 L 214 >gi|309792191|ref|ZP_07686663.1| two-component transcriptional regulator, LuxR family protein [Oscillochloris trichoides DG6] gi|308225732|gb|EFO79488.1| two-component transcriptional regulator, LuxR family protein [Oscillochloris trichoides DG6] Length = 204 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 55/118 (46%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA-RNLT 175 L +GY++ ++ L + I A Y V++ +++ ++ L+ Sbjct: 84 LAAGASGYILKSTAANALIQAIRIVAANGFYLDPLLTPHVVSQYVQRSPATTNLLGSELS 143 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ERE +Q +GY++++IA +L LS+ TV Y A KL R + + AI G+ Sbjct: 144 EREREVVQRVVEGYSNKDIALQLNLSIKTVETYRARALDKLGLSGRAELVRYAIEQGW 201 >gi|222526625|ref|YP_002571096.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|222450504|gb|ACM54770.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Chloroflexus sp. Y-400-fl] Length = 878 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 6/112 (5%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQ-VITDFLELFKK-----RSSAARNLTERETSCL 182 NGYV E ++ + H + + L F K +SS LTERE L Sbjct: 766 NGYVRIFLEEGEEMRHLLTQIHRLRRDDFVAELLAAFGKPAQVVQSSLIEPLTEREIEVL 825 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L +G ++ EIAEKL LSV TV ++ KL+ +R++A A G + Sbjct: 826 RLIAEGLSNPEIAEKLVLSVGTVKTHVKHIYGKLNVDDRVKAAGMARELGLL 877 >gi|219667264|ref|YP_002457699.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537524|gb|ACL19263.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 212 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAAR--NLTERET 179 L GYV+ + + N + G + I+D + + S LTERE Sbjct: 96 LKIGAAGYVLKRAAADEVVNAIRTTYQGRSFLDPEISDIVVNAYRHGSEDEYETLTERER 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G+T+ EIA L +S TV+ + + KL+ ++++ A++ G I Sbjct: 156 EILILLAKGHTNNEIAPILNISAKTVDYHRSNLMKKLNLHSKVELTKYALKRGLI 210 >gi|298245529|ref|ZP_06969335.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553010|gb|EFH86875.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 237 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 48/118 (40%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L +GY++ S + + G +++ + + ++ LT Sbjct: 115 LSAGASGYLLKDSSAEGVVAAIRAVYAGEQVITSRISRRMMQLYEQGLVEKEPIGEGLTS 174 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G +EIA+ + ++ TV ++ + KL+ +R Q + AI+ G I Sbjct: 175 REIEVLLRIARGMVPKEIAQAIAVTEKTVRNHISNIYRKLNIYDRSQIVIYAIKKGLI 232 >gi|261405834|ref|YP_003242075.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329926559|ref|ZP_08280972.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5] gi|261282297|gb|ACX64268.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328939100|gb|EGG35463.1| oxygen regulatory protein NreC [Paenibacillus sp. HGF5] Length = 215 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 57/120 (47%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA------RNL 174 L +GYV+ + L + + + G Y Q+ T + F K+ S + +L Sbjct: 94 LKNGASGYVLKNAPDDELISAIRMVHKGGTYIHPQMATSLVREFIKKDSESAEQDPFNSL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++RE L L GY ++EIAEKL +SV TV A+ KL +R + + A++ + Sbjct: 154 SQREIEILPLIAKGYGNKEIAEKLFVSVKTVEAHKAKIMEKLKLKSRPELVEYALKKKLL 213 >gi|120406420|ref|YP_956249.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119959238|gb|ABM16243.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 212 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCL 182 GYV+ + L + + G + + RS + LT+RE L Sbjct: 101 AGARGYVVKDVDTTELVRAIRAISAGDSAFDSRSAAAVVRSMSGRSESRAQLTDREVEVL 160 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G ++ +I E+L +S T ++ + KL+ R +A+ A + G I Sbjct: 161 RLLAAGLSNNKIGERLYISATTAKFHVSNIMRKLEVSRRAEAVYAASKRGLI 212 >gi|89109637|ref|AP_003417.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. W3110] gi|170082422|ref|YP_001731742.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|256024645|ref|ZP_05438510.1| DNA-binding transcriptional regulator [Escherichia sp. 4_1_40B] gi|307139537|ref|ZP_07498893.1| DNA-binding transcriptional regulator [Escherichia coli H736] gi|85675670|dbj|BAE76923.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K12 substr. W3110] gi|169890257|gb|ACB03964.1| predicted DNA-binding transcriptional regulator [Escherichia coli str. K-12 substr. DH10B] gi|326339074|gb|EGD62889.1| Hypothetical response regulatory protein ygeK [Escherichia coli O157:H7 str. 1044] gi|326343044|gb|EGD66812.1| Hypothetical response regulatory protein ygeK [Escherichia coli O157:H7 str. 1125] Length = 147 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT RE+ Sbjct: 34 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNRESEI 92 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS TV + + KLD + I+ I A+R G Sbjct: 93 LQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMG 143 >gi|253573801|ref|ZP_04851144.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251847329|gb|EES75334.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 215 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------L 174 L GYV+ S L + + + G Y ++ + + F + A L Sbjct: 94 LKKGARGYVLKNSPDEQLVSAIRMVHQGGVYIHPKLASSLVREFVSQDQQADENNPYQLL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE L L GY ++EIAE L +SV TV A+ KL+ +R + + AI+ + Sbjct: 154 STREVEILPLVAKGYGNKEIAEMLHISVKTVEAHKAKIMEKLNLKSRPELVEYAIKKKLL 213 >gi|17231260|ref|NP_487808.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75907780|ref|YP_322076.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|3603297|gb|AAC82626.1| two-component response regulator OrrA [Nostoc sp. PCC 7120] gi|17132902|dbj|BAB75467.1| two-component response regulator [Nostoc sp. PCC 7120] gi|75701505|gb|ABA21181.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 240 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 38/63 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ +IAEKL ++V TV ++ + KL A +R QA +A+R G Sbjct: 178 PLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 237 Query: 233 YIC 235 + Sbjct: 238 LVA 240 >gi|329939332|ref|ZP_08288668.1| two-component system regulator [Streptomyces griseoaurantiacus M045] gi|329301561|gb|EGG45455.1| two-component system regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKR------SSA 170 L +G+++ + LA V + A G ++IT+F L + A Sbjct: 104 LRAGASGFLLKDASARQLAEGVRVVASGEALLAPSVTRRLITEFSRLAEAPRLPAAAPGA 163 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERET L L G ++ EIA +L ++ T+ ++ VKL +R QA A Sbjct: 164 YGELTERETEVLILIAQGLSNAEIAGRLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYE 223 Query: 231 FGYIC 235 + Sbjct: 224 ARLVT 228 >gi|29833613|ref|NP_828247.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29610737|dbj|BAC74782.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 220 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173 L +G+++ + + + V + A G +L + N Sbjct: 96 LRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRQLAAEHGDGGGNRAARAVMERA 155 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ EIA +L + TV +++ + KL A +R QA+ A G Sbjct: 156 ALTDREGEVLRLMARGLSNAEIAGQLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESG 215 Query: 233 YIC 235 ++ Sbjct: 216 FVA 218 >gi|325002947|ref|ZP_08124059.1| NarL family two-component response regulator [Pseudonocardia sp. P1] Length = 236 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCL 182 GYV+ + L + + G + + + LT+RE L Sbjct: 125 AGARGYVVKDVDTTELVRAIRAVSRGESAFDARSASAMVRSLSGGMPDRERLTDRELDVL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G ++ I +L +S TV ++G+ KL R +A+ A + G + Sbjct: 185 RLLARGLSNRAIGAELFISETTVKFHVGNLMRKLMVSRRAEAVYAATKLGLL 236 >gi|253687834|ref|YP_003017024.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251754412|gb|ACT12488.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 245 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 68/196 (34%), Gaps = 26/196 (13%) Query: 62 GDIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSGQLS--VRLEGGL 112 + P + TY ++ H + +L P W ++ VI S + S L Sbjct: 48 SNYPQEWVNTYKENNYQHIDPVILTAINKVSPFSW---EDNIVINSKLKFSKIFNLSKEY 104 Query: 113 LPFAGIAFPVRLGFHKNGYVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFKK 166 G F + + + ++ + E + V L+K+ Sbjct: 105 DIVNGYTFVLHDNNNNLAALSIMFEEHSPTDIESIVEENKDKLQMLLITVHEKITTLYKE 164 Query: 167 RSSAARN--------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + ++ ++RE L A G T EIA L + + TV ++G+ KL Sbjct: 165 MTQSTQSRKQGDKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKLGV 224 Query: 219 VNRIQAIAKAIRFGYI 234 +N AI + I Sbjct: 225 LNAKHAIRLGVELQLI 240 >gi|227115411|ref|ZP_03829067.1| quorum-sensing transcriptional regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 245 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 68/196 (34%), Gaps = 26/196 (13%) Query: 62 GDIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSGQLS--VRLEGGL 112 + P + TY ++ H + +L P W ++ VI S + S L Sbjct: 48 SNYPQEWVNTYKENNYQHIDPVILTAINKVSPFSW---EDNIVINSKLKFSKIFNLSKEY 104 Query: 113 LPFAGIAFPVRLGFHKNGYVIFT------SEFLMLANEVIIEAHGACYQVITDFLELFKK 166 G F + + + ++ + E + V L+K+ Sbjct: 105 DIVNGYTFVLHDNNNHLAALSIMFEEHAPTDMENIVEENKDKLQMLLIAVHEKITTLYKE 164 Query: 167 RSSAARN--------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 + + ++ ++RE L A G T EIA L + + TV ++G+ KL Sbjct: 165 MTQSTQSKKQGEKEIFSQRENEILYWASMGKTYPEIALILDIKISTVKFHIGNVVKKLGV 224 Query: 219 VNRIQAIAKAIRFGYI 234 +N AI + I Sbjct: 225 LNAKHAIRLGVELQLI 240 >gi|91788405|ref|YP_549357.1| two component LuxR family transcriptional regulator [Polaromonas sp. JS666] gi|91697630|gb|ABE44459.1| two component transcriptional regulator, LuxR family [Polaromonas sp. JS666] Length = 230 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 47/119 (39%), Gaps = 11/119 (9%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN--------LT 175 GY++ S F V+ +G + L + A L+ Sbjct: 112 GATGYLVKNSWFGNFPQAVLQVVNGGASITPNLARRLLHRLEHTQEAPHPHTAEKRDKLS 171 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+ GYTS EI +L +S TVN ++ + KL +R QA+ A G + Sbjct: 172 DREKEVLKAVAAGYTSGEIGSRLMISCQTVNTHIKNIYRKLQVRSRAQAVNFAAHRGLL 230 >gi|120553107|ref|YP_957458.1| response regulator receiver protein [Marinobacter aquaeolei VT8] gi|120322956|gb|ABM17271.1| response regulator receiver protein [Marinobacter aquaeolei VT8] Length = 128 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 50/98 (51%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 + + I+ A + + + + L++RE L L +G +++ I+++ Sbjct: 31 WSEVEASRILALRQARMEPDAETCARTPEVAGPDEPLSDREQGVLDLLAEGLSNKAISKQ 90 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 LG+SV TV ++L + KL A NR+QA+A+A G + Sbjct: 91 LGISVATVKSHLSNIYGKLQAENRMQAVARARELGLMS 128 >gi|307328329|ref|ZP_07607506.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886033|gb|EFN17042.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 211 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA-----ARNLT 175 L GY+ + + + A G V + L +++ +A LT Sbjct: 93 LTAGALGYLTKEAGREDVDRALRAAARGQALLDPAVHARLVALARQQPAAGSGELPAGLT 152 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L G ++ EIA L +S TV ++ K + +R QAIA A R+G Sbjct: 153 AREAEVLICMAKGLSNREIARSLFVSEATVKTHVNRVFAKTGSRDRGQAIAYAHRYGL 210 >gi|134101735|ref|YP_001107396.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133914358|emb|CAM04471.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 230 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 9/116 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA------RNL 174 L NG+++ ++ +L VI A G ++ L F+ +A R L Sbjct: 105 LRLGANGFLLKDADPAVLVRAVIDLAAGGAVLDPRITARLLPRFRNLGDSADEVRLVRTL 164 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + RE L L DG ++ +I ++LGL+ TV +Y+ + KL A NR+QA A R Sbjct: 165 SARERQVLFLLADGRSNADIGDRLGLTEATVKSYVSTVLGKLGAENRVQAALIAQR 220 >gi|29828913|ref|NP_823547.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|15824126|dbj|BAB69292.1| two-compnent system regulatory protein [Streptomyces avermitilis] gi|29606018|dbj|BAC70082.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 218 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 3/115 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETS 180 L GY+ ++ L + + V+ +E ++ A LT RE Sbjct: 101 LDCGVRGYLNKSASRNDLVSSIRAVCADNIRIVLHISVEALTHIATTANCQDKLTRREIE 160 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L ++ +I+ +L ++ TV +LG+ KL A +R++A+ KA+ G I Sbjct: 161 ILTLVSKAMSNRQISRRLTIAEGTVKRHLGTIFTKLGARSRLEAVNKAVSIGLIA 215 >gi|291446355|ref|ZP_06585745.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349302|gb|EFE76206.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 225 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--L 174 L G ++ + L + V + A G A VI +L + +A R L Sbjct: 102 LRSGAVGLLMKNTAPEQLVHAVRVLAAGGRILAPEAVGPVIEGYLAAGRDSGAADRTGAL 161 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L L G G ++ EIA +L LS TV ++ S KL VNR+QA A R G I Sbjct: 162 TDREGQVLALVGAGLSNREIARELRLSHGTVKDHVSSVLAKLGGVNRVQAAVLADRAGLI 221 >gi|32967994|gb|AAP92509.1| transcriptional regulator [Streptomyces vinaceus] Length = 236 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKK--RSSAARNL 174 L +GYV +S + A G + +++ +F + ++ R + L Sbjct: 109 LAAGVHGYVPLSSPREDFDAAIQAVAAGGGFLPTHVTRRLVRNFHLVPRRTDRPAELELL 168 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +ERE L L GDG ++ EIA L +S TV +++ KL+ +R+ A R G Sbjct: 169 SEREQQVLLLVGDGRSNREIARTLRVSEATVKSHVSRVLAKLELRDRVHAAQLVWRLGL 227 >gi|256390216|ref|YP_003111780.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356442|gb|ACU69939.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 203 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 4/120 (3%) Query: 115 FAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 G+A V GY+ + L V +++ L A L Sbjct: 87 LDGVALAV--ATGARGYLHKDASRAELRATVSQALADPTWRLAPR--RLRPAEIGAVPTL 142 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+ G ++ EI L LS TV + KL A +R A+A R+G + Sbjct: 143 TAREIQVLEGMSHGRSNAEIGRDLFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLV 202 >gi|300790034|ref|YP_003770325.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799548|gb|ADJ49923.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 218 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L +G+++ + + + G +++ +L + AR L Sbjct: 95 LRGGASGFLVKDAPSEEMLVAIRGVLRGDSMVSPSVTRRLLDRYLADERDPMDIARLGVL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L L G ++ EIA KL + TV ++G KL +R+ A+ A G + Sbjct: 155 TEREKDVLGLIARGLSNSEIAAKLYIGETTVKTHVGRVLGKLRLRDRVHAVVFAYESGLV 214 >gi|51893866|ref|YP_076557.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857555|dbj|BAD41713.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 210 Score = 96.6 bits (239), Expect = 2e-18, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 43/115 (37%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE------AHGACYQVITDFLELFKKRSSAARNLTERET 179 YV+ LA + H Q + L K S+ +T RE Sbjct: 96 AGALSYVLKDIAADELAETIRKAVSGQPTLHPVAAQRMMQELTAPPKASAGVEEITPREL 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G +++EI E+L + TV ++ KL +R Q A++ + Sbjct: 156 EVLKLIAQGLSNKEIGERLFIGERTVKTHVSHLLEKLQLQDRTQLAIYALQNKLV 210 >gi|302530377|ref|ZP_07282719.1| two-component system response regulator [Streptomyces sp. AA4] gi|302439272|gb|EFL11088.1| two-component system response regulator [Streptomyces sp. AA4] Length = 217 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN------- 173 L NG+++ + L V A G V ++ + AA+ Sbjct: 95 LRLGANGFLLKDIDPAALLRAVRDLAKGGAVLDPGVAVRMVQSHRDEQRAAQPARKLLAS 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + L G G ++ EI +L LS TV Y+ + K+ A NR+QA A R G Sbjct: 155 LSEREREVVALIGQGLSNAEIGGRLHLSEATVKGYVSAVLSKIGAANRVQAALLAYRGGL 214 Query: 234 I 234 + Sbjct: 215 L 215 >gi|295131556|ref|YP_003582219.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|291375244|gb|ADD99098.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|313771696|gb|EFS37662.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313810519|gb|EFS48233.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313831559|gb|EFS69273.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313832545|gb|EFS70259.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|314974910|gb|EFT19005.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977995|gb|EFT22089.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314984592|gb|EFT28684.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|315095475|gb|EFT67451.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|327332792|gb|EGE74524.1| two-component system response regulator [Propionibacterium acnes HL096PA2] gi|327448413|gb|EGE95067.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448489|gb|EGE95143.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|328762067|gb|EGF75572.1| two-component system response regulator [Propionibacterium acnes HL099PA1] Length = 224 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA------ 170 L +G+++ + L + G A ++I F+ +R++ Sbjct: 97 LRAGASGFMLKDAGPTELLAAIRAVRDGDSVVAPSATRRLIERFIPRQGERAATITDPKL 156 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A Sbjct: 157 VETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYD 216 Query: 231 FGYI 234 G + Sbjct: 217 AGLV 220 >gi|300786703|ref|YP_003766994.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796217|gb|ADJ46592.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 216 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTER 177 + GY++ + + V + G A + L R + LT R Sbjct: 97 MRAGARGYLLKGARNEQIIRAVRVIGDGEAIFSPAIATRVLSLLGTATPRDESFPRLTLR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L+L G + IAE+L LS TV ++ KL +R QAIAKA G Sbjct: 157 EQEILRLVARGMGNASIAEELVLSQKTVRNHVSHIFRKLRVTDRSQAIAKAKEAGI 212 >gi|148271887|ref|YP_001221448.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829817|emb|CAN00738.1| putative two-component system response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 226 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRS--SAARNL 174 L G+V+ +E + A G +V+ +F + L Sbjct: 106 LEAGARGFVLKDAEPEEFIQAMRALAEGRAALDGVTTRRVMAEFTRRRAASAVHPGTEVL 165 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE ++L GDG +++EI +L + TV ++L KL +R+Q + R G + Sbjct: 166 TPREQDIVRLLGDGLSNDEIGGRLVIETSTVKSHLTRIMTKLGTRDRLQTVVWGYRSGLL 225 >gi|302538423|ref|ZP_07290765.1| response regulator [Streptomyces sp. C] gi|302447318|gb|EFL19134.1| response regulator [Streptomyces sp. C] Length = 223 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC------YQVITDFLELFKKRSSAA--RNLT 175 L GYV+ + + + + A G +++ L ++R + +LT Sbjct: 101 LQAGARGYVVKGAGSEEVLHALRTVAAGGAVIGSEIAARLSELLAGGRRRDAGQLFPSLT 160 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+L G+ + IA +L LS TV ++ KL +R +A+A+A G Sbjct: 161 SREVEVLELIARGHDNRRIARELVLSEKTVRNHITHVFEKLQVTSRAEAVARARDAGL 218 >gi|288904765|ref|YP_003429986.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|288731490|emb|CBI13044.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] Length = 198 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + L+++E LQL Sbjct: 94 AGVDAYVLKDRSTSELMTTIHTVLAGKKEY----SPELMETMMTQDNPLSQQEKRILQLI 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIA+ L LS TV Y+ S KL A NR++A A G++ Sbjct: 150 SLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNRVEATRIAEEHGWV 198 >gi|284045613|ref|YP_003395953.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949834|gb|ADB52578.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 208 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 47/110 (42%), Gaps = 8/110 (7%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +G+V +A V + G + + L+ERE L L Sbjct: 106 AAGASGFVSKDWGAHDVAMAVRMVGLG--------MTMFPPQADQPSTLLSEREQEVLTL 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EIAE+L LS HTV + + KL A NR +A+ +A R G + Sbjct: 158 IAGGSTNREIAEELYLSPHTVKEHTSALYRKLKARNRAEAVQRAQRIGLL 207 >gi|260461786|ref|ZP_05810032.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|319785327|ref|YP_004144803.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|259032427|gb|EEW33692.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|317171215|gb|ADV14753.1| Autoinducer-binding domain protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 245 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 62/179 (34%), Gaps = 6/179 (3%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + NY D + +G P W S + + Q Sbjct: 57 ISNYPPRWAMQYLENQYEKLDPVILRARNGGRPFQWGSDLWGGKMSPAQQQLFDEAARFS 116 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI-TDFLELFKKRSSAAR 172 G+ P+ + V F ++ +IE + Q++ T F +++ R Sbjct: 117 IRCGLTIPIVDLRGRTAAVTFAADEPRPVFLRVIERYEQALQLMATCFHRCVRRKLPGDR 176 Query: 173 N-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE CL+ A G ++ LG+ T+ +L +A KL + QAIA Sbjct: 177 TVDGILLTSREYMCLRSAARGNSAWVTGRILGIKPRTIAFHLENAKKKLGVRTQNQAIA 235 >gi|302559481|ref|ZP_07311823.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] gi|302477099|gb|EFL40192.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] Length = 221 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL------ELFKKRSSA 170 L +G+++ + LA V + A G ++IT+F L +A Sbjct: 95 LRAGASGFLLKDASARRLAEGVRVVASGEALLAPTVTRRLITEFSKLSEAPRLMPAAHAA 154 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LTERET L L G ++ EIA +L ++ T+ ++ VKL +R QA A Sbjct: 155 YGDLTERETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYE 214 Query: 231 FGYIC 235 + Sbjct: 215 ARLVT 219 >gi|269837395|ref|YP_003319623.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786658|gb|ACZ38801.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 249 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 53/129 (41%), Gaps = 20/129 (15%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------------ACYQVITDFLELFKKRSSAAR 172 + ++ E L + + G ++V+++F +L A Sbjct: 105 AGASAFLTKDIEAQELISSLDRVVQGEQLINLEVMSRPELAWRVLSEFRQLTGDDGEAGP 164 Query: 173 -------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L+ RE L G +++EIAE L ++ TV ++ S KL +R+QA+ Sbjct: 165 ASDPKRLPLSVREVEVLDCVAQGLSNKEIAEALFITEQTVKNHMTSVLRKLQVNDRVQAV 224 Query: 226 AKAIRFGYI 234 A+R G++ Sbjct: 225 LCAVRNGWV 233 >gi|256395226|ref|YP_003116790.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361452|gb|ACU74949.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 235 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 24/135 (17%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSA---------- 170 L +G+++ + L + + A G V LE F ++A Sbjct: 95 LRAGASGFLLKDTLAADLLSAIRTVAAGDAVVAPSVTRRLLERFVGTNTAGASPTGTTGT 154 Query: 171 -----------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 A LT+RE L G ++ EIA + + TV ++ KLD Sbjct: 155 TGTASLASALAADTLTDREREVLAHLARGLSNSEIAAHIYIGEGTVKTHVSRILAKLDLR 214 Query: 220 NRIQAIAKAIRFGYI 234 +R+QA+ A G + Sbjct: 215 DRVQAVVYAYESGLV 229 >gi|251798752|ref|YP_003013483.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546378|gb|ACT03397.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 221 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 49/115 (42%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEV------IIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 YV+ T L + + Q +T L + S LTERE Sbjct: 105 AGAVSYVLKTVSAEELIYALHGAVKGMPVMTADVSQALTRGLR-QRTAQSGDEELTEREK 163 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EI E+L +SV TV ++ + +K + +R Q A R G++ Sbjct: 164 EVLLLIAEGRSNKEIGEELHISVKTVKTHVSNLLMKCELEDRTQLAVLAHRKGWV 218 >gi|150249482|gb|ABR67760.1| CmnR [Saccharothrix mutabilis subsp. capreolus] Length = 237 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 9/120 (7%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK------KRSSAARNLT 175 +GY+ S + A G Y V E F+ + A +LT Sbjct: 103 AAGVSGYLPLGSPGEEFPRAIRAVAEGGAYLPAHVTKRVFESFQIIPLPDPSAPALLSLT 162 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ERE L+ G G ++ EIA + +S TV +++ KL+ +R+QA A R G + Sbjct: 163 EREGQVLRAIGQGRSNREIAREFEVSETTVKSHVSRVLAKLELRDRVQAALLAWRLGLVT 222 >gi|56963198|ref|YP_174929.1| two-component response regulator [Bacillus clausii KSM-K16] gi|56909441|dbj|BAD63968.1| two-component response regulator [Bacillus clausii KSM-K16] Length = 210 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTE 176 L NGY++ + L + +G +V+ L+ ++ S +LT Sbjct: 94 LKLGVNGYMLKNGDTESLIRSIKSTINGGLSLEDQVAAKVVPTLLQ-NQEEPSIDPSLTP 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + L G+G ++EIAE+LGLSV TV KL +R Q AIR + Sbjct: 153 RERAILTCIGEGLNNKEIAERLGLSVGTVKNQTSHIFDKLALRDRTQLAIYAIRHRLV 210 >gi|315644623|ref|ZP_07897755.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315280130|gb|EFU43427.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 201 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA+ + G +VI EL L+ RE ++LA Sbjct: 96 AGVYGYLLKDTGSEELADAIRRVYDGK--RVINS--ELSLAVWDDPCPLSPREREVMKLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++I +L LS TV Y+ A KL A RI+AI A G++ Sbjct: 152 AQGLVLQDIGAQLFLSYGTVRNYMSEAIGKLGANTRIEAIDIARSKGWL 200 >gi|306830765|ref|ZP_07463929.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304427112|gb|EFM30220.1| DNA-binding response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 198 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 47/109 (43%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + L+++E LQL Sbjct: 94 AGVDAYVLKDRSTSELMTTIHTVLAGKKEY----SPELMETMMTQDNPLSQQEKRILQLI 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIA+ L LS TV Y+ S KL A NR++A A G++ Sbjct: 150 SLGKTNQEIADTLYLSNGTVRNYISSILNKLSANNRVEATRIAEEHGWV 198 >gi|213967475|ref|ZP_03395623.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] gi|301386436|ref|ZP_07234854.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato Max13] gi|302058672|ref|ZP_07250213.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato K40] gi|302131192|ref|ZP_07257182.1| transcriptional regulator, LuxR family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927776|gb|EEB61323.1| transcriptional regulator, LuxR family [Pseudomonas syringae pv. tomato T1] Length = 240 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 73/225 (32%), Gaps = 9/225 (4%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 + + L ++ + Y + L N D G Sbjct: 24 ELDGQTAIEKALQWLRRECDSERAMFYQFKGPM------LLTFITSNVDDAWGQAYRQHE 77 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + + + L + WQ ++ + + +V I++ Sbjct: 78 LITQDPVIRCYRNQLGFLNWQDAFKQYPASACYEEAV---DACELLPAISYGYTSHCRGT 134 Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 V + + E ++ + + ++R LT RE LQ A DG Sbjct: 135 DSVTSVCTLSEVERTISAEQKYLVSSLMPVLHSVARGLKFSSRCLTLRELEVLQWARDGK 194 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+ EI+ +S TV +L + KL NR QA+ +A+ G I Sbjct: 195 TAWEISIIRDVSESTVKYHLKTIYSKLGVANRAQAVGEALCRGLI 239 >gi|52079413|ref|YP_078204.1| putative transcriptional regulator YhcZ [Bacillus licheniformis ATCC 14580] gi|52784773|ref|YP_090602.1| YhcZ [Bacillus licheniformis ATCC 14580] gi|52002624|gb|AAU22566.1| putative transcriptional regulator YhcZ [Bacillus licheniformis ATCC 14580] gi|52347275|gb|AAU39909.1| YhcZ [Bacillus licheniformis ATCC 14580] Length = 217 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 7/114 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD-----FLELFKKRSSAA-RNLTERET 179 Y + +E L + +G Y + + F + + LT RE Sbjct: 98 AGACAYQLKDAEPDELVETIRAV-YGGRYSLDPNIMSHVFHHVSQADEKEKIHQLTNREK 156 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G +++EIA L +S TV ++ + KL +R QA A++ G Sbjct: 157 DVLLEITKGKSNKEIAASLFISEKTVKTHVSNLLSKLGLSDRTQAALFAVKHGL 210 >gi|228949758|ref|ZP_04111975.1| Response regulator receiver [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809915|gb|EEM56319.1| Response regulator receiver [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 503 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 10/119 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA----------ARNLTE 176 +GYV+ + + LA + + G+ F ++++ LT+ Sbjct: 385 GADGYVLKSIDSRELAESIRLVYRGSTMITHDLFHRMWEENEETGLFESQSDGIEYGLTK 444 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L G + IA L LS TV Y + KL NR +A+ KA G + Sbjct: 445 RELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDIGLLS 503 >gi|187930859|ref|YP_001901345.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|241664112|ref|YP_002982472.1| two component LuxR family transcriptional regulator [Ralstonia pickettii 12D] gi|187728903|gb|ACD30066.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|240866139|gb|ACS63800.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] Length = 201 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L+ERE L + G TS EIA LGLS TV+ ++ +A KL RI+A+ + Sbjct: 133 AHPPVQLSEREAEVLAWSARGKTSGEIATILGLSKRTVDFHMDNAREKLGVATRIEAVVR 192 Query: 228 AIRFGYI 234 A G I Sbjct: 193 ASSAGII 199 >gi|325002788|ref|ZP_08123900.1| two component transcriptional regulator, LuxR family protein [Pseudonocardia sp. P1] Length = 225 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARNL-- 174 L +G+++ ++ + L + + A ++IT+F L Sbjct: 101 LRSGASGFLLKDTDPVALLRAIDLVHAGEALLAPSVTRRLITEFARHGPAAPPGTDRLAV 160 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L L G G+T+ EIA +L +S T ++G KL A +R+Q + A G Sbjct: 161 LTGREREVLALVGRGHTNGEIAAQLVISPATARTHVGRLLTKLGARDRVQLVVIAHETGL 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|302554590|ref|ZP_07306932.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472208|gb|EFL35301.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 217 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSS-AARNLT 175 L +GYV+ + L GA ++ +LE R +T Sbjct: 97 LRAGASGYVLKSVADRDLVEACRAAVRDEPFIYPGAERALVRSYLERLHAGGGLPERPIT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L +G+TS+EI E L +S TV + + KL +R++ AIR G I Sbjct: 157 EREEEILKLVAEGHTSKEIGELLFISAKTVERHRANLLQKLGMRDRLELTRYAIRAGLI 215 >gi|219849447|ref|YP_002463880.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543706|gb|ACL25444.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Chloroflexus aggregans DSM 9485] Length = 917 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + L++RE L+L +G ++ EIA L ++V TV +++ + KL +R Sbjct: 845 VTSAPPTLPEPLSQREIEVLRLMAEGRSNHEIATSLVIAVSTVKSHINNIFNKLGVASRT 904 Query: 223 QAIAKAIRFGYI 234 QA+A+ R G I Sbjct: 905 QAVARGRRLGLI 916 >gi|84498640|ref|ZP_00997397.1| two-component system, regulatory protein [Janibacter sp. HTCC2649] gi|84381037|gb|EAP96923.1| two-component system, regulatory protein [Janibacter sp. HTCC2649] Length = 215 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA-----RNLTER 177 +G+V+ + L + A G E F++R++A LT R Sbjct: 99 AGASGFVLKETRPEFLLAAIRAVADGTQVVAAGATRAVFERFRERATATPGADYERLTPR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L A G ++ EIA LS TV ++ KL +R+Q + A G + Sbjct: 159 EREILLRAAQGLSNAEIAAAEFLSEATVKTHVSRILGKLALRDRVQLVVYAYEHGLL 215 >gi|298244409|ref|ZP_06968215.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551890|gb|EFH85755.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 220 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------------YQVITDFLELFKKRSSA 170 L GY++ + + + + G + ++ L + A Sbjct: 96 LQAGARGYLLKGALKAEILRAIRGVSQGEAIFGPTIAKRLMSYFAMLKPSAPLPAPPAQA 155 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L L T+ EI E+L LS TV ++ + KL R QAI +A Sbjct: 156 FPELTEREQEILALIAQHLTNSEITERLVLSPKTVRNHVSNIFSKLQVATRAQAIIRARE 215 Query: 231 FGY 233 G+ Sbjct: 216 AGW 218 >gi|271968827|ref|YP_003343023.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270512002|gb|ACZ90280.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 214 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L +G+++ S L + G V + + + +T RE Sbjct: 95 LRAGVSGFLLKVSPPEQLFAAIRTAVSGLATLDPAVTARVMAGYVGAPAIPGTVTPRERE 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G G T+ EI L ++ TV ++ KL +R +A+ A G + Sbjct: 155 VLTLIGRGLTNREITAALSVTESTVGTHINRLLAKLHLRDRAEAVRYAYEHGLV 208 >gi|323357435|ref|YP_004223831.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323273806|dbj|BAJ73951.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 216 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAAR--NLTE 176 +G+++ SE L + + A A ++ E A LTE Sbjct: 99 RGASGFLLKDSEPEFLLSAIRTVHAGSAVIAAEATRELFAHIAENGSAEPVPASFGELTE 158 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LA G ++ EIA + LS TV ++ KL +R+Q + A R G + Sbjct: 159 REREIFLLAAAGLSNSEIAAREFLSEATVKTHISRILAKLSLRDRVQLVVFAYRHGLV 216 >gi|319646806|ref|ZP_08001035.1| YhcZ protein [Bacillus sp. BT1B_CT2] gi|317391394|gb|EFV72192.1| YhcZ protein [Bacillus sp. BT1B_CT2] Length = 216 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 7/114 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD-----FLELFKKRSSAA-RNLTERET 179 Y + +E L + +G Y + + F + + LT RE Sbjct: 98 AGACAYQLKDAEPDELVETIRAV-YGGRYSLDPNIMSHVFHHVSQADEKEKIHQLTNREK 156 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G +++EIA L +S TV ++ + KL +R QA A++ G Sbjct: 157 DVLLEITKGKSNKEIAASLFISEKTVKTHVSNLLSKLGLSDRTQAALFAVKHGL 210 >gi|326792257|ref|YP_004310078.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium lentocellum DSM 5427] gi|326543021|gb|ADZ84880.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Clostridium lentocellum DSM 5427] Length = 519 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 37/62 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT +E L L +G ++ EI ++L L++ TV ++ KL+ NRIQA+++A + G Sbjct: 458 LTPKEREILSLVAEGRSNAEIGDQLYLTIGTVKWHMNHILGKLEVKNRIQAVSEARKLGE 517 Query: 234 IC 235 I Sbjct: 518 IT 519 >gi|226308907|ref|YP_002768867.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226188024|dbj|BAH36128.1| probable NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 209 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 43/107 (40%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ S + V G T L ++ LT RE+ L L Sbjct: 99 DAGAIGYLLKDSTPDEIFGAVRGAVAGRSVLSPTVASRLVQQMQRPQEALTARESELLSL 158 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +G T+ E+ + L +S TV +LG KL R A++ A+R Sbjct: 159 LAEGMTNRELGKALFISEATVKTHLGHIYAKLGVETRSAAVSVALRR 205 >gi|269794993|ref|YP_003314448.1| CheY-like receiver domain/HTH DNA-binding domain-containing response regulator [Sanguibacter keddieii DSM 10542] gi|269097178|gb|ACZ21614.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Sanguibacter keddieii DSM 10542] Length = 258 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 55/152 (36%), Gaps = 9/152 (5%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 Q +G + V + A +R G +G+++ + ML + + Sbjct: 100 QIFAPARAASRAGPVRVIVLTTFDLDDRAAAAIRYGA--SGFLLKDATPAMLRDAIRTVH 157 Query: 150 HGACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKLGLSV 202 G D L R A R LT +E L G + EIA + +S Sbjct: 158 AGNAVLAPDDLSTLLDGRFRARRPSPPGLEDLTPKEREVLAAVAAGLNNAEIARRAFVSE 217 Query: 203 HTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TV ++G+ KL +R+Q + A G + Sbjct: 218 STVKTHVGAVLRKLGLRDRVQVVVLAHEHGLV 249 >gi|226363249|ref|YP_002781031.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226241738|dbj|BAH52086.1| NarL family two-component response regulator [Rhodococcus opacus B4] Length = 276 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 42/108 (38%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ + L V + G +L + A +L+ RE L L Sbjct: 96 AAGAAGYLLKDTPPPELLAAVRAASAGDSVLSPAVASKLMTRVRRPATSLSPREIQVLTL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G ++ EI ++L LS TV ++L KL +R A R G Sbjct: 156 VAAGRSNREIGKELFLSETTVKSHLVHIFGKLGVKSRTSANRAGPRAG 203 >gi|38233071|ref|NP_938838.1| response regulator [Corynebacterium diphtheriae NCTC 13129] gi|5639947|gb|AAD45905.1|AF161328_2 response regulator CstA [Corynebacterium diphtheriae] gi|38199330|emb|CAE48963.1| Response regulator [Corynebacterium diphtheriae] Length = 233 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 18/128 (14%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR------------- 172 +G+++ + L V + LFK A Sbjct: 96 HGASGFLLKDTAPEDLIAAVRTVGEQSAVISPAATAVLFKSMRGHAPQTDLVATPGGDIN 155 Query: 173 -----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L L G ++ EIAE+L +S+ TV ++ K + +R+ A+ Sbjct: 156 AGLIDPLTPREQEILLLIALGKSNTEIAEELFISLPTVKTHVSKVLSKTGSRDRVHAVLF 215 Query: 228 AIRFGYIC 235 A G + Sbjct: 216 AFSRGLVA 223 >gi|329927577|ref|ZP_08281740.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] gi|328938366|gb|EGG34756.1| response regulator receiver domain protein [Paenibacillus sp. HGF5] Length = 201 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA+ + G +VI EL L+ RE ++LA Sbjct: 96 AGVYGYLLKDTGSEELADAIRRVYDGK--RVINS--ELSLAVWDDPCPLSPREREVMKLA 151 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++I +L LS TV Y+ A KL A RI+AI A G++ Sbjct: 152 AQGLVLQDIGAQLFLSYGTVRNYMSEAIGKLGANTRIEAIDIARSKGWL 200 >gi|320323453|gb|EFW79538.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. glycinea str. B076] Length = 240 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 14/181 (7%) Query: 63 DIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPF 115 ++ + + Y D + + + L + WQ + + + + V L Sbjct: 64 NVDDAWGKAYRQREFITQDPVIRCYRNQLGFVNWQDAFRQYPVSACYEEIVDTCELLP-- 121 Query: 116 AGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 A H G TS + + E ++ + + +R Sbjct: 122 ---AISYGYMNHCRGADSVTSVCTLGEVGRAISAEQKYLMSSLMPVLHSVARGLKFCSRG 178 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQ A DG T+ EI+ +S TV +L + KL NR Q + +A+ G Sbjct: 179 LTHRELEVLQWARDGKTAWEISMIRDVSESTVKYHLKTIYSKLGVANRAQTVGEALCRGL 238 Query: 234 I 234 I Sbjct: 239 I 239 >gi|283783120|ref|YP_003373874.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] gi|283441895|gb|ADB14361.1| response regulator receiver domain protein [Gardnerella vaginalis 409-05] Length = 261 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 38/67 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +SA LT+RE L G +++EIA+KL +S+ TV ++ K+ A +R+QA+ Sbjct: 193 NSAITELTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILGKIGARDRVQAVVF 252 Query: 228 AIRFGYI 234 A G + Sbjct: 253 AYENGLV 259 >gi|159898087|ref|YP_001544334.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891126|gb|ABX04206.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 257 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 50/131 (38%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------------ACYQVITDFLELFKKRSSA 170 L Y LA + A G +++T F L + Sbjct: 97 LRAGAAAYYSKEISPKTLATVLRRVARGEYVINDVMFEDPRVADRILTQFRGLQTGIVAE 156 Query: 171 A-------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 L++RE L+ G T+++IA+ L +S TV ++ S KL +R Q Sbjct: 157 PDLDISLFSPLSDREIEVLEHIASGATNKDIADALKISTQTVKNHISSILRKLSLNDRTQ 216 Query: 224 AIAKAIRFGYI 234 A+ A+R G+I Sbjct: 217 AVLYALRRGWI 227 >gi|17230648|ref|NP_487196.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17132251|dbj|BAB74855.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 228 Score = 96.6 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 12/121 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSS------AARN 173 GY + L + A GA + + I +E + + + Sbjct: 100 AGAQGYCLKGIIAEKLVLALRSVAAGASWWDETATREIRSSIESSQSQPPEQNFPKSDHP 159 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G T++EIA L ++ TV ++ + KL+ +R QA+ A++ Sbjct: 160 LTGRELEILALLAKGKTNQEIATVLYITPGTVRVHVHAILHKLEVSDRHQAVVVALQKRL 219 Query: 234 I 234 I Sbjct: 220 I 220 >gi|302381790|ref|YP_003817613.1| LuxR family transcriptional regulator [Brevundimonas subvibrioides ATCC 15264] gi|302192418|gb|ADK99989.1| two component transcriptional regulator, LuxR family [Brevundimonas subvibrioides ATCC 15264] Length = 208 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 4/112 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ----VITDFLELFKKRSSAARNLTERET 179 L GYV+ + L + + G + R LT RE Sbjct: 95 LAAGATGYVLKDAGREELLHAIRAVGAGRSALPGDLLRKAMAPTVGPRPDDLDRLTPRER 154 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ G T++EIA LG+ TV A++ KL +R QA A R Sbjct: 155 EVLESVARGLTNKEIARDLGIGPGTVKAHVEKLIAKLGVADRTQAAVFAARA 206 >gi|196040971|ref|ZP_03108268.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] gi|196028139|gb|EDX66749.1| DNA-binding response regulator [Bacillus cereus NVH0597-99] Length = 71 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 37/63 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L LA +G T+ EIA+ L LS TV Y+ KLDA NRI+AI A Sbjct: 9 NPLSDREKEVLLLAKEGKTANEIAKALYLSPGTVRNYISEVLTKLDAKNRIEAITIAEEK 68 Query: 232 GYI 234 G+I Sbjct: 69 GWI 71 >gi|116621801|ref|YP_823957.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224963|gb|ABJ83672.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 225 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 2/112 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L Y++ L L + G Y + L+ RE L+ Sbjct: 115 LAAGAQSYLLKGMSHLKLLEAIRSVRTGHTY--FPRAIRNSVPGKLNRAALSPREMDILR 172 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G +++EIA+ L ++ TV ++ +LD +R QA+ A++ G + Sbjct: 173 LIVRGLSNQEIADALNITRGTVKWHVNIILRRLDVNDRTQAVVVAVQRGIVV 224 >gi|271966802|ref|YP_003340998.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509977|gb|ACZ88255.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 213 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 5/117 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-----QVITDFLELFKKRSSAARNLTERE 178 L +G+++ + L + A G + LT RE Sbjct: 95 LRAGASGFLLKRTRPAELVQAIRTVAAGDSLLFPAAIRALAARREAVRAVPGIDRLTSRE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+L G ++ EIA +L +S+ TV ++G+ KL+A +R +A+ A G++ Sbjct: 155 ADVLRLMTRGLSNGEIAGELVISMETVKTHVGNVLAKLEARDRTRAVITAYESGFVS 211 >gi|239942882|ref|ZP_04694819.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239989342|ref|ZP_04710006.1| two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 216 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--L 174 L G ++ + L + V + A G A VI +L + +A R L Sbjct: 93 LRSGAVGLLMKNTAPEQLVHAVRVLAAGGRILAPEAVGPVIEGYLAAGRDSGAADRTGAL 152 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L L G G ++ EIA +L LS TV ++ S KL VNR+QA A R G I Sbjct: 153 TDREGQVLALVGAGLSNREIARELRLSHGTVKDHVSSVLAKLGGVNRVQAAVLADRAGLI 212 >gi|262202778|ref|YP_003273986.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262086125|gb|ACY22093.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 220 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 +GY++ + L + V A G L + R+ LT RE + Sbjct: 110 AGASGYLLKDTPPEELVSAVRGAAAGESALSPAVASRLLSRMRTPPDTVLTPREIEIIAE 169 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IA +L LS TV ++L A KL +R A+A+A R G I Sbjct: 170 VATGRSNRQIARELMLSEMTVKSHLVHAFTKLGVGSRTAAVAEARRRGVI 219 >gi|37519813|ref|NP_923190.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35210804|dbj|BAC88185.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 232 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 45/88 (51%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 + A Q + + + A LTERE LQL G+++E IA++L ++V TV Sbjct: 144 VHAAPGTRQTVIQAADPELAQILEASPLTERELEVLQLIVQGHSNEGIAQQLYITVGTVK 203 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL A +R QA A+R G + Sbjct: 204 THVRNILSKLCADDRTQAAVLALRSGLV 231 >gi|328885800|emb|CCA59039.1| two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 197 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173 L +G+++ +E LA V A G L + A Sbjct: 64 LRSGASGFLLKDTEPEQLAQLVRTLAAGGVVMSPKASRALLRSHPGAGAPQDADVSRVGL 123 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L L +G ++ +I ++ LS TV ++ S KL +R+QA A R G Sbjct: 124 LSDRERDVLVLVAEGLSNADIGTRIHLSAGTVKDHVSSILTKLRVSSRVQAALLAERAGL 183 Query: 234 IC 235 + Sbjct: 184 LT 185 >gi|21222068|ref|NP_627847.1| two-component system regulator [Streptomyces coelicolor A3(2)] gi|4753877|emb|CAB42040.1| putative two-component system regulator [Streptomyces coelicolor A3(2)] Length = 248 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 50/130 (38%), Gaps = 19/130 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA----CYQVITDFLELFKKRSSAAR------- 172 L +G+++ + L V HG V +E F + + R Sbjct: 113 LRAGASGFLLKDAGPERLLAAV-TAVHGGDALFAPAVTRRLVEAFTRMTDTGRADPPDAG 171 Query: 173 -------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE LQL G G ++ E A++L +S TV +L KL +R QA+ Sbjct: 172 PPPPALTTLTGREAEVLQLVGRGLSNAEAADRLFISEATVKTHLNRTMTKLGLTSRAQAV 231 Query: 226 AKAIRFGYIC 235 A G + Sbjct: 232 VVAYETGLVT 241 >gi|290454885|emb|CBI67623.1| sR protein [Pseudomonas fuscovaginae] Length = 237 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 65/216 (30%), Gaps = 13/216 (6%) Query: 26 NRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLL 85 I++ F Y++ P NY D + H + Sbjct: 27 KIIRSFEFEQYSLGLRFPLPISSPKFHLSSNYSPAWESAYIDNNYFSIDQTVKHGLTEHR 86 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF-------TSEF 138 P+ W + + G P R G + TS Sbjct: 87 PLCWSADAFTEHLH-----FWEDAKYYQLVHGWCTPSRAKHDTMGMLSLVRSASPITSLE 141 Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 ++ + + +F+ AA LT RE L+ + G T E L Sbjct: 142 FNEKETKLLWISHIAHSTMLNFIAPNYIPEIAA-TLTVREVETLKWSATGKTYTETGLIL 200 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + TV +L +A KL + N+++A KA G + Sbjct: 201 SIDERTVKFHLVNAMRKLHSSNKVEAAMKAYALGML 236 >gi|302543707|ref|ZP_07296049.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461325|gb|EFL24418.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 206 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 52/111 (46%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T+ LA E+I HG V D S+ LT RET L Sbjct: 99 LEAGARGFVPKTASAQQLA-EIIRAVHGGSRYVDPDLAA--DAISAGDSPLTARETELLD 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG + EIA + LS TV YL +A KL A NR A+ +A G++ Sbjct: 156 LAADGASVAEIARRAALSPGTVRNYLSAAAAKLHAENRHAAVRRARERGWL 206 >gi|302533152|ref|ZP_07285494.1| two-component system response regulator [Streptomyces sp. C] gi|302442047|gb|EFL13863.1| two-component system response regulator [Streptomyces sp. C] Length = 216 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L +G+++ + + + V + A G A + ++ + LTE Sbjct: 96 LRAGADGFLLKRARPSEIVHAVRLVAEGETLLFPAAVRALAAEYGNREARAVLERAALTE 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE + L+L G T+ EI+ +L + TV +++ + KL A +R QA+ A G++ Sbjct: 156 REEAVLRLMARGLTNVEISRELIVGTETVKSHVSAVLGKLGARDRTQAVIAAYESGFVS 214 >gi|168700566|ref|ZP_02732843.1| two-component transcriptional regulator, LuxR family protein [Gemmata obscuriglobus UQM 2246] Length = 216 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARNLTE 176 L GYV+ + L + A G Y +++ + + +L+E Sbjct: 96 LEAGAAGYVLKRAAPSELVQAIRAVAGGGTYLDPALATGELSEVNDPARDAGGTGADLSE 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RET ++L GY+++EIA +L LSV TV Y + KL R+ + A R G++ Sbjct: 156 RETEVVRLIALGYSNKEIAGRLKLSVKTVETYKTRSMEKLGVRTRVDIVQYAARRGWLV 214 >gi|186681901|ref|YP_001865097.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464353|gb|ACC80154.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 240 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 38/63 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ +IAEKL ++V TV ++ + KL A +R QA +A+R G Sbjct: 178 PLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 237 Query: 233 YIC 235 + Sbjct: 238 LVA 240 >gi|258653548|ref|YP_003202704.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556773|gb|ACV79715.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 223 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L +G++ + L + + + A G + +E AA Sbjct: 97 LQAGASGFLGKGASPTQLLDAIRVIARGESLLSPRATRVVIERALAAPGAATPDEAAGPD 156 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE + L G +++EIA +L LS T ++ A KL A +R Q + A R Sbjct: 157 LSVLTEREREIVGLVAQGLSNDEIAARLYLSPLTAKTHVNRAMTKLGARDRAQLVVLAYR 216 Query: 231 FGYI 234 G + Sbjct: 217 AGLV 220 >gi|270489958|ref|ZP_06207032.1| putative nitrate/nitrite response regulator protein NarL [Yersinia pestis KIM D27] gi|270338462|gb|EFA49239.1| putative nitrate/nitrite response regulator protein NarL [Yersinia pestis KIM D27] Length = 240 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ E +L + A G + +L ++ + LTERE L Sbjct: 98 DAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSRHEQVNPFSELTERELDVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 Q G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 158 QEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 199 >gi|262204133|ref|YP_003275341.1| response regulator receiver [Gordonia bronchialis DSM 43247] gi|262087480|gb|ACY23448.1| response regulator receiver [Gordonia bronchialis DSM 43247] Length = 216 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 GY++ +++ L V A G V+ ++ + + LTERE Sbjct: 99 AGATGYLVKSAQRSELVAAVHATADGQAVFTPGLAGLVLGEYRRIARSPGPETPVLTERE 158 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T L+ G +S +IA +L +S TV ++G+ KL NR++ AI G Sbjct: 159 TQVLREVAKGLSSRQIANRLAISPRTVENHVGATLRKLQLANRVELTRYAIEHGL 213 >gi|325917865|ref|ZP_08180041.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] gi|325535911|gb|EGD07731.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas vesicatoria ATCC 35937] Length = 210 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLEL---FKKRSSAARNLTERETS 180 G+++ + L + + A G V TD + F+ + + +ERE + Sbjct: 97 AGAQGFLLKDAAPEDLRDAIARVAAGETLLQPVSTDPVRARYQFRDQQPPSETFSEREVA 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY+++EIA L L+ TV Y+ + KL +R +A+ KAI I Sbjct: 157 ILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210 >gi|238060047|ref|ZP_04604756.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|237881858|gb|EEP70686.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] Length = 264 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 46/117 (39%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L GYV+ ++ ++ + + A G QV+T + LT Sbjct: 146 LRAGARGYVLKDTDPDVIIDALRTVAGGGLVLGPRVGPQVLTTLQRQPVELPPPFDRLTP 205 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+ G T+ IA + GLS TV L + KL +R+QA A G Sbjct: 206 RERDILRHLATGETNARIARRFGLSEKTVRNQLSAVFAKLGVTDRVQAALLARDAGL 262 >gi|256395191|ref|YP_003116755.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361417|gb|ACU74914.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 217 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 14/122 (11%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSA-------A 171 GY++ ++ L V A G V+ +F +L A Sbjct: 91 AGAIGYLVKSASREELLAAVERIAVGDPVFTPGLAGLVLGEFRKLAMVPPGAGAGTAADT 150 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RET L+L G + ++IA++L LS TV ++ + KL NR++ + AI Sbjct: 151 PRLTDRETEVLRLVAKGLSYKQIADRLVLSHRTVQNHVQNTLNKLQLHNRVELVRYAIAQ 210 Query: 232 GY 233 G Sbjct: 211 GL 212 >gi|218506954|ref|ZP_03504832.1| transcriptional activator protein [Rhizobium etli Brasil 5] Length = 179 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 35/167 (20%), Positives = 63/167 (37%), Gaps = 8/167 (4%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + G LP+ W + ++ + + G+ PVR + Sbjct: 15 DPVVRLGRRGFLPVEWSASGWDS--GRAYGFFKEAMAFGVGRQGVTLPVRGPQGERSLFT 72 Query: 134 FTSE-----FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGD 187 TS + + + + + + + L R A L+ RE CL++ + Sbjct: 73 VTSNHPDAYWRQFRMDSMRDLQFLAHHLHDRAMVLSGMRKVADLPRLSRRELQCLEMTAN 132 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++I +L +SV V YL SA KL +A+A+A I Sbjct: 133 GLLAKQICARLSISVSAVQLYLASARRKLTVATTSEAVARATALELI 179 >gi|288962256|ref|YP_003452551.1| two-component response regulator [Azospirillum sp. B510] gi|288914522|dbj|BAI76007.1| two-component response regulator [Azospirillum sp. B510] Length = 240 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 20/129 (15%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK----------------- 166 ++ T+ +LA + + A G + V D + + + Sbjct: 104 GAEAFLPKTTPRRVLAQALRLVAEGGSFVPKDVALDLMHMTEMSLDIDEAEESEAPALEG 163 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + A LT+RE L + G T++EI L L TV + KL A NR A+ Sbjct: 164 EGAPASPLTDREQQVLSMLATGATNKEIGRNLSLQEVTVKLHTRRILRKLGARNRTDAVR 223 Query: 227 KAIRFGYIC 235 +A + G + Sbjct: 224 RAQQAGLLS 232 >gi|302561047|ref|ZP_07313389.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302478665|gb|EFL41758.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 227 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 15/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFL--------ELFKKRS 168 L +G++ SE + N + I A G +I FL + R+ Sbjct: 97 LRAGASGFLGKGSEPGEMLNAIRIAAGGEALLSPVATKGLIARFLAQEGTSEADRDPARA 156 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE L G++++EIAE+L +S TV ++ A KL A +R Q + A Sbjct: 157 ERLDSLTVREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMAKLGARDRAQLVVTA 216 Query: 229 IRFGYI 234 G + Sbjct: 217 YESGLV 222 >gi|126649458|ref|ZP_01721699.1| YhcZ [Bacillus sp. B14905] gi|169825964|ref|YP_001696122.1| two-component response regulator-like protein [Lysinibacillus sphaericus C3-41] gi|126593783|gb|EAZ87706.1| YhcZ [Bacillus sp. B14905] gi|168990452|gb|ACA37992.1| two-component response regulator-like protein [Lysinibacillus sphaericus C3-41] Length = 215 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 6/114 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLELFKKRSSAAR----NLTERET 179 GY + E L + G + T LE+ ++ + A LT RE Sbjct: 96 AGAAGYQLKDIEPDELVLSIRRIMRGENTLHPEATTTLEMDRQEAQNAPHSLNPLTPREQ 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G ++ EIA L ++ TV ++ + KL +R QA A++ G Sbjct: 156 DVLAELTKGKSNREIASSLFVTEKTVKTHISNIFTKLQVQDRTQAALYAVKHGL 209 >gi|121998744|ref|YP_001003531.1| two component LuxR family transcriptional regulator [Halorhodospira halophila SL1] gi|121590149|gb|ABM62729.1| two component transcriptional regulator, LuxR family [Halorhodospira halophila SL1] Length = 217 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L GY++ ++ L + + G Q+ + Sbjct: 91 LRAGAQGYLLKHNDPEYLISALHQATDGKIAVAPQLTDTLARALGQPPDRTEPGPPDPFA 150 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ G +++ IA LG+S TV ++ S KL +R++A KA+ FG Sbjct: 151 GLTPRERDILERLAAGESNKVIARHLGISDGTVKLHVKSVLRKLGVHSRVEAAIKAVDFG 210 Query: 233 Y 233 Sbjct: 211 L 211 >gi|260466634|ref|ZP_05812822.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259029640|gb|EEW30928.1| transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 236 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 5/144 (3%) Query: 95 ETVIESSGQLSVRLEGGLLPFAG----IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 + L E LL G + + +G + + + + +++A Sbjct: 94 AAQAPDADGLVSGEEARLLDVLGHAEIYSLRLNVGRQRLFALFSAASAGKIDQPALMKAQ 153 Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 C ++ +L ++ L++RE CL +G T++E+A LG+S +TVN+Y+ Sbjct: 154 LKCCYALSHIPQLIAA-AAMQDPLSDRERECLFWVSEGKTTDEVAVILGVSSNTVNSYIT 212 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 A K A NR AIA AIR G I Sbjct: 213 HAIQKFAASNRAMAIATAIRSGII 236 >gi|300779182|ref|ZP_07089040.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] gi|300504692|gb|EFK35832.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] Length = 212 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC--YQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY++ + L + G + + LT+RE LQL Sbjct: 101 GASGYLLKNTSIDELVICIRGALSGDIVFCNETKQIISRPSQNDLPVARLTKREKQILQL 160 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS IAE+L LS TV+ + + K A N + I +A++ G I Sbjct: 161 VAQGKTSNMIAEELFLSPLTVDTHRKNLLQKFHAKNSTELINRAMQQGMI 210 >gi|269925757|ref|YP_003322380.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] gi|269789417|gb|ACZ41558.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 1648 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 6/114 (5%) Query: 126 FHKNGYVIF---TSEFLMLANEVIIEAHGACYQVITDFLELFKK--RSSAARNLTERETS 180 G++ + EF L VI ++ ++ F + RSS+ + LT+RE Sbjct: 1532 AGAQGFIPKNLESEEFFQLLRNVIRGEPAITPRLAGKLIDEFSRPVRSSSLQMLTDREQE 1591 Query: 181 CLQLAGDGYTS-EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LQL +G TS ++++ +LG+S HTV +L + KL +R Q +A A++ G Sbjct: 1592 ILQLLVNGVTSTKDLSRQLGVSEHTVKYHLRNILSKLHLQSRAQVVAWAVQHGL 1645 >gi|297623722|ref|YP_003705156.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164902|gb|ADI14613.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 226 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 2/112 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTERETSCLQ 183 GY++ ++ L + A G L + + S LT RET L+ Sbjct: 113 AGATGYLLKDTDAEGLVEAIYAAARGEVRLHPEAAKRLLRSVRTSDMREALTARETDILR 172 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G G +++EIA LGLS TV ++ KL +R QA A++ G + Sbjct: 173 HIGRGESNKEIAAALGLSELTVKTHVSRLLSKLGLASRTQAALFALKEGLVS 224 >gi|22125339|ref|NP_668762.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis KIM 10] gi|45442440|ref|NP_993979.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Microtus str. 91001] gi|167399199|ref|ZP_02304723.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. UG05-0454] gi|21958219|gb|AAM85013.1|AE013747_3 nitrate/nitrite response regulator [Yersinia pestis KIM 10] gi|45437305|gb|AAS62856.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Microtus str. 91001] gi|167051703|gb|EDR63111.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 220 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ E +L + A G + +L ++ + LTERE L Sbjct: 109 DAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSRHEQVNPFSELTERELDVL 168 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 Q G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 169 QEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 210 >gi|153948784|ref|YP_001400250.1| nitrate/nitrite response regulator protein NarP [Yersinia pseudotuberculosis IP 31758] gi|152960279|gb|ABS47740.1| nitrate/nitrite response regulator protein NarP [Yersinia pseudotuberculosis IP 31758] Length = 209 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ E +L + A G + +L ++ + LTERE L Sbjct: 98 DAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSRHEQVNPFSELTERELDVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 Q G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 158 QEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 199 >gi|158318665|ref|YP_001511173.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158114070|gb|ABW16267.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 244 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 43/108 (39%), Gaps = 6/108 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSS---AARNLTERET 179 GYV+ L + A G V LE + S A L +RE Sbjct: 130 AGAAGYVLKEIRGNDLVGAIRTVASGQSLLAPSVTRRVLERLRDGPSEDPAMATLNQRER 189 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LQL DG T+ +I +LGLS TV Y+ S KL +R QA Sbjct: 190 EILQLIADGLTNRQIGTRLGLSEKTVKNYVSSILEKLGLASRTQAAVY 237 >gi|226304567|ref|YP_002764525.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183682|dbj|BAH31786.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 222 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 11/119 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELF----KKRSSAARNL 174 +GY++ ++ L V G V+ ++ + R+ L Sbjct: 103 AGASGYLVKSASVAELLEAVRATFDGQAVFTPGLAGLVLGEYRRMSTAPADDRAPELPRL 162 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RET L+L G ++++IA +L LS TV ++ + KL NR++ AI G Sbjct: 163 TDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221 >gi|145599420|ref|YP_001163496.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Pestoides F] gi|145211116|gb|ABP40523.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Pestoides F] Length = 209 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ E +L + A G + +L ++ + LTERE L Sbjct: 98 DAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSRHEQVNPFSELTERELDVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 Q G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 158 QEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 199 >gi|221067422|ref|ZP_03543527.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220712445|gb|EED67813.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 254 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 12/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN-----L 174 GY++ S F + V+ A+G +++ + + L Sbjct: 135 GVVGYLLKNSWFGSYSQAVLEVANGGASISPIVAKKILPKIFQYSAPNEIPLEHKKFEKL 194 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + EI + + +S TV+ ++ + K+ R QA+ A+ G I Sbjct: 195 TDREKEVLRLIAQGKRTHEIGDYMEISALTVSTHVKNIYRKMQVRTRAQAVRYAVLKGII 254 >gi|159898692|ref|YP_001544939.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159891731|gb|ABX04811.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 218 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAAR---NLTE 176 GY++ L + + G Y + + + + A++ LTE Sbjct: 96 AGAAGYLLKDMAHSDLVSAIRGTVSGKAYVDPNVTARLLSQVATSRNQPPASQLTGRLTE 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE + L L G+T+ IAE+L LS TV ++ + KLD +R QA A+ G Sbjct: 156 RELAVLNLIATGHTNASIAEQLRLSEGTVRNHVSTILSKLDVADRTQAALLAVEHGL 212 >gi|228995222|ref|ZP_04154940.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442] gi|228764519|gb|EEM13350.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442] Length = 570 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 12/119 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----------NLT 175 +GY++ + + LA + + G + D + + LT Sbjct: 452 GADGYLLKSIDSRELAESIRLVYRGGT-MINHDLFHRMWEENEETGLVESKSDGKEFGLT 510 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L L G + IA KL LS TV Y + KL NR +A+ KA G + Sbjct: 511 KRELEVLNLLSQGSRYKTIASKLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDTGLL 569 >gi|223934123|ref|ZP_03626068.1| two component transcriptional regulator, LuxR family [Streptococcus suis 89/1591] gi|302024316|ref|ZP_07249527.1| response regulator protein [Streptococcus suis 05HAS68] gi|330833306|ref|YP_004402131.1| two component LuxR family transcriptional regulator [Streptococcus suis ST3] gi|223897209|gb|EEF63625.1| two component transcriptional regulator, LuxR family [Streptococcus suis 89/1591] gi|329307529|gb|AEB81945.1| two component transcriptional regulator, LuxR family [Streptococcus suis ST3] Length = 200 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 4/110 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + LT E+ L+L Sbjct: 95 ADVDAYVLKERSIADLMRTIETVLAGRKEY----SPELMDILLTQRSPLTNLESQLLKLV 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G +++EIA +L LS TV Y+ S KL A NR A+ A G++ Sbjct: 151 AEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENRTAAVRIAQEKGWLV 200 >gi|146309197|ref|YP_001189662.1| two component LuxR family transcriptional regulator [Pseudomonas mendocina ymp] gi|145577398|gb|ABP86930.1| two component transcriptional regulator, LuxR family [Pseudomonas mendocina ymp] Length = 220 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERE 178 GY++ + + + + A G C Q++ ++ + + LT RE Sbjct: 99 AGAVGYLLKDASRQEVIDGLRQVAAGQCALNGMVSAQLLRRVVQ-RNQGGAPGSALTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+L G+T+ EI E+LG++ T A++ KL +R QA + I G + Sbjct: 158 HQVLELIAAGFTNREIGEELGIATGTAKAHVERVIGKLGVADRTQAAVQGIALGLVA 214 >gi|226311708|ref|YP_002771602.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226094656|dbj|BAH43098.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 215 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLAN---EVIIEAHGACYQVITDFLELFKKRSSAARN----LTERE 178 F GY++ E N ++ E ++ T + F++ + LT RE Sbjct: 98 FGAQGYLLKNLEPDDWINYLHALLGEDSELTREMATRLMYRFRQEEATDEMVPAVLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G G T+ EI+E L ++ +TV +L + KL NR+Q A A+R + Sbjct: 158 REIVMYVGAGKTNREISEALIIAENTVKNHLKNILEKLQLANRVQLAAYAVRHHLV 213 >gi|13472561|ref|NP_104128.1| transcriptional regulator [Mesorhizobium loti MAFF303099] gi|14023307|dbj|BAB49914.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 265 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 5/144 (3%) Query: 95 ETVIESSGQLSVRLEGGLLPFAG----IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 + L E LL G + + +G + + + + +++A Sbjct: 123 AARAPDADGLVSGEEARLLDVLGHAEIYSLRLNVGRQRLFALFSAATSGQIDQPALMKAQ 182 Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 C ++ +L ++ L++RE CL +G T++E+A LG+S +TVN+Y+ Sbjct: 183 LKCCYALSHIPQLIAA-AAMQDPLSDRERECLFWVSEGKTTDEVAVILGVSSNTVNSYIT 241 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 A K A NR AIA AIR G I Sbjct: 242 HAIQKFAASNRAMAIATAIRSGII 265 >gi|318061656|ref|ZP_07980377.1| two-component system response regulator [Streptomyces sp. SA3_actG] gi|318076898|ref|ZP_07984230.1| two-component system response regulator [Streptomyces sp. SA3_actF] Length = 214 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I H V + ++ L+ RE L+ Sbjct: 107 LEVGVRGFVPKTVSAQRLA-EIIRTVHAGSRYVDPELAA--DAIAAGDSPLSAREAEVLE 163 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG EIA++ GLS TV YL SA KL A NR A+ A G++ Sbjct: 164 YAADGAPVAEIAQRAGLSPGTVRNYLSSAVTKLGAENRHAAVRTARSRGWV 214 >gi|302559828|ref|ZP_07312170.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477446|gb|EFL40539.1| DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 200 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I H V + ++ LT RE L+ Sbjct: 93 LAAGVRGFVPKTVSAQRLA-EIIRTVHAGNRYVDPELAA--DAIAAGDSPLTAREAEVLE 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG EIAE+ LS TV YL SA KL A NR A+ A G++ Sbjct: 150 LAADGAPVAEIAERAALSQGTVRNYLSSAVTKLGAENRHAAVRLARERGWV 200 >gi|299531690|ref|ZP_07045095.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] gi|298720406|gb|EFI61358.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] Length = 228 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS-----AA 171 L GY++ S F V+ A+G ++I + Sbjct: 106 LKRGAVGYLVKNSWFGSYLQAVLEVANGGAAISPRVAKKIIPKIFNAAMQGEKIFTHKKF 165 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LTERE L+L G T++EI+ L +S TV ++ + K+ R QA+ A+ Sbjct: 166 ESLTEREIDILKLIAQGKTTQEISSYLEISPLTVATHVKNIYGKMQVRTRAQAVRYAMLT 225 Query: 232 GYI 234 G I Sbjct: 226 GII 228 >gi|256377110|ref|YP_003100770.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255921413|gb|ACU36924.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 223 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------------ACYQVITDFLELFKKRSSAA 171 L G+++ +L V A G + E ++ ++ Sbjct: 97 LRHGACGFLLKDMSPALLVEAVRAAAAGTSMISPNVTVRLLAHLAPERGAERAEESAALV 156 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE ++L G T++E+A +L L V TV +LG+A KL A NR++ A A R Sbjct: 157 EPLTERELEVVRLVALGRTNDEVAGELHLGVATVKTHLGNAQRKLAARNRVEVAAWAWRT 216 Query: 232 GYI 234 G + Sbjct: 217 GLV 219 >gi|332366199|gb|EGJ43954.1| DNA-binding response regulator [Streptococcus sanguinis SK355] Length = 199 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + ++ L+++E LQ A Sbjct: 95 ADVDAYVLKERSIADLMKTIHTVLDGQKEY----SPELMEVLMTSRNPLSQQERLVLQAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +++EIAEKL LS TV Y+ + KLDA NR +A+ G++ Sbjct: 151 ADGLSNKEIAEKLFLSNGTVRNYMSAILTKLDAENRTEAVRIGQDKGWL 199 >gi|260459597|ref|ZP_05807851.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] gi|259034399|gb|EEW35656.1| two component transcriptional regulator, LuxR family [Mesorhizobium opportunistum WSM2075] Length = 222 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 5/105 (4%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 VRLG GY + ++ ++ AHG ++ ++++ K + LT RE Sbjct: 109 VRLGAQ--GYCFQFDDPHIIFETILAVAHG---RICIPYIDINKVNDTPLAQLTVREREL 163 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L + DG+T+ +IA + G+S +TV +L + KLD NR A+A Sbjct: 164 LAVLSDGWTNLQIATRTGISENTVKYHLKNLYDKLDVRNRAMAVA 208 >gi|256389895|ref|YP_003111459.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356121|gb|ACU69618.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 234 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 12/121 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN--------- 173 +G+++ L V + G + +E F + R Sbjct: 109 AGASGFLLKDVSPEHLVAAVHMVRAGDAMLAPAITRRLVERFAVPTVNPRTEALHKDLAT 168 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G G ++ E+A + LS TV ++ KL+ +R QA+ A G Sbjct: 169 LTPREREVLGLLGRGLSNAELAARFHLSEATVKTHVARILAKLNLRDRAQAVVVAYETGL 228 Query: 234 I 234 I Sbjct: 229 I 229 >gi|307323931|ref|ZP_07603140.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306890380|gb|EFN21357.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 241 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 39/109 (35%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + S L+ERE L+ Sbjct: 132 AGATGYLLKAERPEELFAAIRNAASGRTALSAPVADRVLARMRSPRPGLSERERDILRQL 191 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +LG KL R A+A A + Sbjct: 192 ARGLGNREIARALFISEATVKTHLGRIYGKLGVETRAGAVAVATERRLL 240 >gi|284030307|ref|YP_003380238.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809600|gb|ADB31439.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 213 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 4/114 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN-LTERET 179 L GY+ + + + + A G +V + + +++ LT RET Sbjct: 97 LRAGARGYLTKDAGRVEIGAALRATAAGQSTFDPEVARRLVAGLSPAPAGSKDGLTARET 156 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G ++ EIA L + TV ++ + K+ A +R +A+ A R G Sbjct: 157 EVLRLIAQGLSNGEIAGLLFIGEATVKTHINNTFAKIGARHRAEAVRYAYRHGI 210 >gi|271961795|ref|YP_003335991.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504970|gb|ACZ83248.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 213 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARN-LT 175 L +G+++ + + + I A ++I + A LT Sbjct: 90 LRAGASGFMLKDAPGEEIIAAIRHVHRGDSIIAPATTRRLIGRLVAKADTDPDAVLKVLT 149 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ERE G ++ EI +L LS TV ++G KL +R+QA+ A G + Sbjct: 150 EREREVFLSLARGASNAEIGVELFLSETTVKTHVGRILTKLGLRDRVQAVVLAYESGVVT 209 >gi|218514697|ref|ZP_03511537.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli 8C-3] Length = 124 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 3/126 (2%) Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 EG + + F +G + + E +L+ E + + G + FL R Sbjct: 2 EGASRQYCSLTF--NVGRSRLALMFLFGEGFILSPERLRDV-GLLAGYVASFLRCGGARV 58 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT+RE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A Sbjct: 59 DRDFELTDRELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFA 118 Query: 229 IRFGYI 234 +R + Sbjct: 119 VRNNLV 124 >gi|328885811|emb|CCA59050.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 260 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKK-RSSAARNLT 175 L +GYV+ + L GA +I +L+ ++ R + +T Sbjct: 140 LKAGASGYVLKSVADRDLVEACRAAVRDEPFIYPGAETALIRTYLDRAEQGRPLPDKAVT 199 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L +G++S+EI + L +S TV + + KL +R++ AIR G I Sbjct: 200 EREEEILKLVAEGHSSKEIGDLLVISPKTVERHRANLLQKLGMRDRLELTRYAIRVGLI 258 >gi|163759735|ref|ZP_02166820.1| putative two-component response regulator protein [Hoeflea phototrophica DFL-43] gi|162283332|gb|EDQ33618.1| putative two-component response regulator protein [Hoeflea phototrophica DFL-43] Length = 217 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--------KKRSSAARNLT 175 L +GY++ L + A G Y + L KK NLT Sbjct: 96 LEAGASGYILKGIGAAQLVEALSSVASGQSYISPDLAVRLLTVATNNTTKKPEHPIDNLT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE LQL +G +++E+ L L T+ Y+ + KL NR++A A G Sbjct: 156 RREEQILQLVANGLSNKEVGAALDLQEKTIKHYMTNILQKLHVRNRVEAALLARDRGL 213 >gi|149007477|ref|ZP_01831120.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] gi|147761049|gb|EDK68018.1| DNA-binding response regulator [Streptococcus pneumoniae SP18-BS74] Length = 199 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEMVMTRPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS T+ Y+ + KLDA NR +A A G++ Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|295839171|ref|ZP_06826104.1| DNA-binding response regulator [Streptomyces sp. SPB74] gi|197695622|gb|EDY42555.1| DNA-binding response regulator [Streptomyces sp. SPB74] Length = 201 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L H G++ + L + A G + I L + + A+ L RE L+ Sbjct: 94 LAAHVTGFMRKDAHPAQLLEAIRTVAAGE--RAIDPHLAVA-ALEATAQPLAPRELEVLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G IA +L LS TV YL SA VKL A NR+ A+ A G+I Sbjct: 151 LAAVGEDVAAIACRLFLSRGTVRNYLSSAVVKLGARNRMDAVRIAREEGWI 201 >gi|157059906|dbj|BAF79713.1| putative two-component system response regulator [Streptomyces kasugaensis] Length = 215 Score = 96.2 bits (238), Expect = 3e-18, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 40/109 (36%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + + A G + + S +LT+RE L Sbjct: 106 AGATGYLLKAERPEELFSAIQAAAQGRTTLSAPVASRVMARMRSPRPSLTDRERDILAQL 165 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +IA L +S TV +LG KL R A+A A + Sbjct: 166 AQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLL 214 >gi|224552975|gb|ACN54736.1| PagR [Pantoea agglomerans] Length = 210 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 60/185 (32%), Gaps = 10/185 (5%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG---QLSVRLEGGL 112 N + + DI + D + + W E VI S G Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFW----ENNVILSGGYNLTRIFNESFQY 83 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKR-SS 169 F G FP+ + + S+ + + + ++ L L+ + Sbjct: 84 NIFQGQTFPLHDYLNNLALLSIISQKDSGIDMEKNRSKIVSFLVKLHQKTLNLYSQHHQK 143 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ G G T E+A L ++ TV ++G+ KL N A+ Sbjct: 144 KNVFLSPRECQILKWVGAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGT 203 Query: 230 RFGYI 234 + Sbjct: 204 ELRLL 208 >gi|302337621|ref|YP_003802827.1| LuxR family transcriptional regulator [Spirochaeta smaragdinae DSM 11293] gi|301634806|gb|ADK80233.1| two component transcriptional regulator, LuxR family [Spirochaeta smaragdinae DSM 11293] Length = 214 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERET 179 + +GY++ + L +I V L L + +LT RE Sbjct: 99 MAAGADGYLLKCVDIDALVQ-IIGSLCKGIPAVSPYLLNLTIDDLSDAKDSGSSLTTREK 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G ++EIA++L +S TV +++ KL+ NR+QA+ A + Sbjct: 158 DVLRCMLEGKENKEIADELFISCETVKSHIKHIFRKLEVTNRVQAVQVAAEKKIL 212 >gi|229494528|ref|ZP_04388291.1| DNA-binding response regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229318890|gb|EEN84748.1| DNA-binding response regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 222 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 11/119 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELF----KKRSSAARNL 174 +GY++ ++ L V G V+ ++ + R+ L Sbjct: 103 AGASGYLVKSASVAELLEAVRATFDGQAVFTPGLAGLVLGEYRRMSTAPADDRAPELPRL 162 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RET L+L G ++++IA +L LS TV ++ + KL NR++ AI G Sbjct: 163 TDRETEVLRLVAKGLSAKQIATRLSLSHRTVENHVQATLRKLQLANRVELTRYAIEQGL 221 >gi|329934362|ref|ZP_08284441.1| two-component response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|329305958|gb|EGG49813.1| two-component response regulator, LuxR family [Streptomyces griseoaurantiacus M045] Length = 221 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRS---SAARN 173 L +G++ L + A G A +IT FL + + A Sbjct: 97 LRVGASGFLGKDVSAEALLEGIRTVAAGDALLSPAATRALITRFLATPEAEAVTGPDAGV 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +L +G + EIAE+L LS TV ++ A KLDA +R Q +A A R G Sbjct: 157 LTAREREVTELVAEGKSDAEIAEQLFLSPLTVRTHVQRAKTKLDARSRAQLVAIAYRSGL 216 >gi|264680819|ref|YP_003280729.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|262211335|gb|ACY35433.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] Length = 214 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLE----LFKKRSSAAR 172 L NGYV+ + L + + G ++I + K Sbjct: 92 LRAGANGYVLKERDDLEVTLSIRSVLRGGAPIDPFIARRIIAELQPSQPTEAHKEMPPEA 151 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L DG T+ EIAE L LS +TV ++ + KL +R +A+++A G Sbjct: 152 LLSAREIQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARARG 211 Query: 233 YIC 235 + Sbjct: 212 LLS 214 >gi|159900604|ref|YP_001546851.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159893643|gb|ABX06723.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 191 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 2/107 (1%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGD 187 G V + + + G C + ++ L+ERE LQL + Sbjct: 83 GVVSTDAYPQEIWASLQALQLGLCVLSPSILAQIHSPPQPEPLDNQLSEREHEVLQLLAE 142 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ +IA++L +S HTV ++ + KLD +R +AI + G I Sbjct: 143 GLTNRQIAQRLIISEHTVKFHVSALLGKLDVSSRTEAIRVGAQRGLI 189 >gi|313835533|gb|EFS73247.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928592|gb|EFS92423.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314970359|gb|EFT14457.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|314982460|gb|EFT26553.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315090549|gb|EFT62525.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315094064|gb|EFT66040.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|328908207|gb|EGG27966.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 206 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G+++ + LA V+ E H + + L+ERE L+ Sbjct: 99 MDAGVAGFLVKDTPAEDLAR-VVREVHAGGRVIDPALAA--ESLIEGHNPLSEREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A + G++ Sbjct: 156 LAESGASISLIASQLYLSVGTVRNHVSSAIGKTGAANRTEAAVTARQRGWL 206 >gi|308177129|ref|YP_003916535.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307744592|emb|CBT75564.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 222 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA--------AR 172 L G+++ +S L + V+ A GA ++ +E + S+ R Sbjct: 99 LSGGAAGFMLKSSGPDELISAVLAVAEGAAALSPRIAQRVIEKVRNLDSSGQSDAQTLVR 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G T+ EIA +L L+ TV ++ S +K++A NR+ A A R G Sbjct: 159 KLTAREHDVLALVGASLTNSEIAGRLFLTEATVKGHMTSIMLKINARNRVDAALIAYRAG 218 Query: 233 YI 234 + Sbjct: 219 IV 220 >gi|225857575|ref|YP_002739086.1| response regulator [Streptococcus pneumoniae P1031] gi|225725289|gb|ACO21141.1| response regulator [Streptococcus pneumoniae P1031] Length = 199 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEVVMTHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS T+ Y+ + KLDA NR +A A G++ Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|311894159|dbj|BAJ26567.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 233 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 49/125 (39%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE------LFKKRSSA 170 LG G+++ S +L V G +++ D + SA Sbjct: 106 LGSGACGFLLKRSGPNLLIEAVRAAMAGDTLISPQITVRLLRDLGHGPAAPRPPQPAESA 165 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE ++L G T+ EI L +S TV +L + KL NR+ A A R Sbjct: 166 VEPLTEREWEIVELVAQGRTNAEIGAGLFISAGTVKTHLANVQGKLGTRNRVAIAAWAWR 225 Query: 231 FGYIC 235 G I Sbjct: 226 TGRIS 230 >gi|282862235|ref|ZP_06271298.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563260|gb|EFB68799.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 230 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLE----------LFKK 166 L G++ +E L N + I A G +I FL Sbjct: 98 LRAGAAGFLGKGAEPDELLNAIRIAAAGEALLSPAATKGLIATFLAQAPDADGDLGRSTA 157 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 S LT RE L L G+++++IAE+L +S TV ++ A KL A +R Q + Sbjct: 158 YSELLDALTGREREVLVLVAGGHSNDQIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVV 217 Query: 227 KAIRFGYI 234 A G + Sbjct: 218 IAYESGLV 225 >gi|238059115|ref|ZP_04603824.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237880926|gb|EEP69754.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 220 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 8/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA-RNLTER 177 +G+++ +E + L V + A G ++I++ + +LT R Sbjct: 98 AGASGFLLKDAEPVDLIRGVRVVAAGDALLAPSVTRRLISEVAARRTPPPAPDLASLTNR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E + L G ++EEIA +L +S T ++ KL +R Q + A G Sbjct: 158 EVEIMDLVAQGLSNEEIAGRLEISHATTKTHVSRILTKLGLRDRAQLVVWAYESG 212 >gi|111220151|ref|YP_710945.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111147683|emb|CAJ59339.1| Putative two-component system response regulator [Frankia alni ACN14a] Length = 213 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L +G+V+ +E L + + A G VI F + LT Sbjct: 96 LRAGASGFVLKDTEPADLLRAIRVVAAGESLLSPTVTRLVIDTFARRPAVTAPDLSGLTV 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + L G G +++EIA +L +S T ++ VKL A +R Q A + G + Sbjct: 156 REREVMSLVGRGMSNDEIAARLVISPATARTHVSRVMVKLAARDRAQLAVLANQAGLV 213 >gi|108757533|ref|YP_632250.1| LuxR family DNA-binding response regulator [Myxococcus xanthus DK 1622] gi|108461413|gb|ABF86598.1| DNA-binding response regulator, LuxR family [Myxococcus xanthus DK 1622] Length = 246 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 50/135 (37%), Gaps = 25/135 (18%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA----------- 171 +GY++ + + + G + L F+ A+ Sbjct: 111 AGASGYLLKGAPVDKIIEAIKEVRAGGTVIQPNLARRLLRHFRVEPDASPLISPPAAPEP 170 Query: 172 -----------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + L++RE LQL G ++ E A L LS T+ +L KL+ N Sbjct: 171 SASDLPQEPLLKPLSDREREILQLIAKGVSNSEAARLLDLSKATIRTHLEHIYRKLEVTN 230 Query: 221 RIQAIAKAIRFGYIC 235 R++A+ + IR G I Sbjct: 231 RVEAVTEGIRKGLIS 245 >gi|81428980|ref|YP_395980.1| two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] gi|78610622|emb|CAI55673.1| Two-component system, response regulator [Lactobacillus sakei subsp. sakei 23K] Length = 199 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETS 180 Y++ TS +AN + G ++ + + A LT RE Sbjct: 85 AGAASYILKTSTAGEIANTIRKTTAGQSVLEPEVTNKMMNRMTHQAETKLYEDLTNRERE 144 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L G +++EIA++L +++ TV ++ + KL +R QA AI+ Sbjct: 145 VLGLVAKGRSNQEIADELFITLKTVKTHVSNILAKLQVDDRTQAAIYAIKH 195 >gi|311899603|dbj|BAJ32011.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 238 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 18/128 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKR--------- 167 L G+++ + L + V A G ++ L + Sbjct: 97 LRAGAAGFLLKRASPERLIDAVHAVAAGEAVLDPAVTRDLLGRLLAAPEPPPGPSAPPPG 156 Query: 168 --SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L+LA +G+ +EEIA L L+ TV ++ KL A +R QA+ Sbjct: 157 SVPGPLAALTVREREVLRLAAEGHPNEEIAALLHLAESTVKTHVKRILGKLGARDRSQAV 216 Query: 226 AKAIRFGY 233 A A R G Sbjct: 217 AAAYRHGL 224 >gi|299531936|ref|ZP_07045336.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] gi|298720111|gb|EFI61068.1| two component transcriptional regulator, LuxR [Comamonas testosteroni S44] Length = 214 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLE----LFKKRSSAAR 172 L NGYV+ + L + + G ++I + K Sbjct: 92 LRAGANGYVLKERDDLEVTLSIRSVLRGGAPIDPFIARRIIAELQPSQPTEAHKEMPPEA 151 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L DG T+ EIAE L LS +TV ++ + KL +R +A+++A G Sbjct: 152 ILSAREIQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARARG 211 Query: 233 YIC 235 + Sbjct: 212 LLS 214 >gi|315501316|ref|YP_004080203.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315407935|gb|ADU06052.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 225 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA------RNLTE 176 GYV T L + + A G ++ L+ F R A LT Sbjct: 108 AGARGYVTKTISPEELTDAIRRVADGDAVFSPRLAGFVLDAFASRPDAPVADPELDQLTN 167 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L GY +EIA++L +S+ TV ++ + KL NR + A + Sbjct: 168 REREVLRLLARGYAYKEIAKELYISIKTVETHVSNVLRKLQMSNRYELSRWAADRRLV 225 >gi|87118413|ref|ZP_01074312.1| putative two component system response regulator [Marinomonas sp. MED121] gi|86166047|gb|EAQ67313.1| putative two component system response regulator [Marinomonas sp. MED121] Length = 226 Score = 96.2 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA---RN 173 L +G+++ + L V + A G ++I F EL ++ Sbjct: 96 LREGASGFILKDTPPDELVAAVHVVAQGGALLTPSITKKLIGAFAELKPSHTNVTGHIDR 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ G+ + EIA +L + TV ++ S KL+ +R QA+ A G Sbjct: 156 LTTREKEILKNLALGFNNSEIASRLFIGESTVKTHVSSLLSKLELRDRAQAVIFAYENGV 215 Query: 234 I 234 I Sbjct: 216 I 216 >gi|297194468|ref|ZP_06911866.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718721|gb|EDY62629.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 227 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS----AAR 172 L +G+++ + L + A G ++I L + ++ Sbjct: 101 LRAGASGFLVKDTRPADLLAAIRTVAAGESLLSPGPTSRLIARVLSAPQVPAANGAGGPD 160 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G + EIAE LGLS T ++ KL A +R Q + A G Sbjct: 161 VLTDRERQVLTLVARGLNNTEIAESLGLSPLTAKTHVSRIMSKLCARDRAQLVIVAYESG 220 Query: 233 YIC 235 + Sbjct: 221 LVT 223 >gi|72162981|ref|YP_290638.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71916713|gb|AAZ56615.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 233 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTER 177 GYV T LA+ ++ A G ++ L+ F + LT+R Sbjct: 117 AGARGYVTKTISGTELADAIVRVADGDAVFSPRLAGFVLDAFAATDAPPVDPELDRLTQR 176 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L GY +E+A +L +SV TV ++ S KL NR + A + Sbjct: 177 EREVLRLIARGYAYKEVARELFISVKTVETHVSSVLRKLQLSNRHELSRWATARKLV 233 >gi|116621307|ref|YP_823463.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116224469|gb|ABJ83178.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 207 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L Y+ L + G Y + + +L+ RE L Sbjct: 97 LAAGVQAYLTKDVLHDELIKAIRAVHAGQTY--LPAAVAASLAAQLPRPDLSAREVQVLG 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +++IA L ++ HTV ++ + KL +R QA AI+ G I Sbjct: 155 LIVRGLANKQIAFTLSIAEHTVKNHVKNILSKLGVQDRTQAATAAIQRGII 205 >gi|264679733|ref|YP_003279642.1| LuxR family transcriptional regulator [Comamonas testosteroni CNB-2] gi|262210248|gb|ACY34346.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni CNB-2] Length = 274 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITD-----FLELFKKRSSAA 171 L GY++ S F + V+ A+G ++I F E + + Sbjct: 152 LKRGAVGYLVKNSWFGSYSQAVLEVANGGAAISPVVAKKIIPKIFKANFHEESIFKHKSF 211 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LTERE L+L G +S E+A L +S TV+ ++ + K+ R QA+ AI Sbjct: 212 ESLTEREVEILKLIAQGKSSLEVASYLQISPLTVSTHIKNIYGKMQVRTRAQAVRCAILI 271 Query: 232 GYI 234 G I Sbjct: 272 GII 274 >gi|159898419|ref|YP_001544666.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus ATCC 23779] gi|159891458|gb|ABX04538.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 867 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 7/96 (7%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARN-------LTERETSCLQLAGDGYTSEEIAEKL 198 + HG +I L F KR + + L+ERE LQ G T EI E+L Sbjct: 769 LASDHGFNSPLIKHALIEFAKRQPSVQPQTHTLERLSERELEVLQQIATGLTDREIGERL 828 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LS++TV + + KL+ NR QA+A+A G + Sbjct: 829 YLSMYTVKVHARNIYAKLEVSNRTQAVARARTLGLL 864 >gi|21220239|ref|NP_626018.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256788647|ref|ZP_05527078.1| two-component system response regulator [Streptomyces lividans TK24] gi|289772542|ref|ZP_06531920.1| two-component system response regulator [Streptomyces lividans TK24] gi|5531455|emb|CAB50960.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289702741|gb|EFD70170.1| two-component system response regulator [Streptomyces lividans TK24] Length = 221 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------- 173 L +G+++ + L + + G + +E + R++ R Sbjct: 95 LRAGASGFLLKDASRDRLLEAIRVVHAGEALLSPSITRRLIEDYATRAAPVRPREAVLAG 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ EIA +L ++ TV +++GS KL +R QA+ A Sbjct: 155 LTPREREILLLVARGLSNPEIAARLVVTEATVKSHVGSMFAKLHLRDRAQAVVFAYENAI 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|313901723|ref|ZP_07835152.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] gi|313468011|gb|EFR63496.1| two component transcriptional regulator, LuxR family [Thermaerobacter subterraneus DSM 13965] Length = 222 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLE--------LFKKRSSAARNL 174 GY++ E L+ + G +++++ + AR L Sbjct: 96 AGLGGYLLANREAAGLSEAIRACTAGIFVIDAEIMSELASDSPLYRYVPAPEEVERARLL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++RE L G T+ ++A +L +S TV +L KL +R QA+ A+R G I Sbjct: 156 SQRELEVLSRIARGKTTAQVARELFISPKTVRNHLSHIMQKLGVRDRTQAVLFALRVGLI 215 >gi|300856053|ref|YP_003781037.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] gi|300436168|gb|ADK15935.1| two-component response regulator [Clostridium ljungdahlii DSM 13528] Length = 224 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 7/113 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTER 177 +GY++ S +A + G Y + +D KK S+ NL++R Sbjct: 99 SIGADGYMLKDSAGTDIAEAIRRVYKGEKYIDKSLVSTLFSDIKIKAKKASNILDNLSKR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E L GY+++EI ++L +S TV Y + K++ +R+ A AI Sbjct: 159 EIEVLSKISKGYSNKEIGKQLYISEKTVKNYATNLFKKINVDDRVHAAIVAIE 211 >gi|282857278|ref|ZP_06266517.1| DNA-binding response regulator, LuxR family [Pyramidobacter piscolens W5455] gi|282584883|gb|EFB90212.1| DNA-binding response regulator, LuxR family [Pyramidobacter piscolens W5455] Length = 216 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAAR-NLT 175 L GYV+ L + A+G Y +I D+L L + + L+ Sbjct: 95 LKAGARGYVLKECSSQELCLAIQTVANGQYYLTPAILSTLIGDYLRLTENEEQGSDCPLS 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L G +++IAE+L +S +TV+ + KL + + AIR GY+ Sbjct: 155 ERELDVLKLLVKGCNAKQIAEQLSISKNTVDTHRRHILDKLGCNSMAELTRYAIREGYL 213 >gi|307332571|ref|ZP_07611620.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306881779|gb|EFN12916.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 231 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 16/128 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLEL---------FKKR 167 L +G+++ + L V + A G ++IT F + Sbjct: 101 LRSGASGFLLKDASARQLGEAVRVVAAGEALLAPTVTKRLITTFSRIGEAAGLGGPLPSP 160 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE L L G ++ EIAE+L ++ TV ++ VKL +R QA Sbjct: 161 QGRLAELTERENEVLVLVAQGCSNAEIAERLIVAESTVKTHVSRILVKLGLRDRTQAAVF 220 Query: 228 AIRFGYIC 235 A + Sbjct: 221 AYEARLVT 228 >gi|229489109|ref|ZP_04382975.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis SK121] gi|229324613|gb|EEN90368.1| transcriptional regulatory protein DegU [Rhodococcus erythropolis SK121] Length = 209 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 42/107 (39%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ S + V G L ++ LT RE+ L L Sbjct: 99 DAGAIGYLLKDSTPDEIFGAVRGAVAGRSVLSPAVASRLVQQMQRPQEALTARESELLSL 158 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +G T+ E+ + L +S TV +LG KL R A++ A+R Sbjct: 159 LAEGMTNRELGKALFISEATVKTHLGHIYAKLGVDTRSAAVSVALRR 205 >gi|195978994|ref|YP_002124238.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195975699|gb|ACG63225.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 199 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 10/127 (7%) Query: 112 LLPFAGIAFPV-R---LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR 167 ++ +G P+ L ++ + L + V + G QVI D +L +K+ Sbjct: 79 MILISGFYEPLLHKRALDLGIKAFLPKECSYDELISTVYNVSKGN--QVIPD--DLLQKQ 134 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S LTE E L+L D Y++E+I++KL +S TV+ ++ + KL+ +R+ A+ + Sbjct: 135 ESHL--LTESEIEILRLISDEYSNEKISKKLYISRRTVDTHVSNICAKLNVTSRVGAVRE 192 Query: 228 AIRFGYI 234 AI+ I Sbjct: 193 AIKLKLI 199 >gi|51597079|ref|YP_071270.1| nitrate/nitrite response regulator protein NarP [Yersinia pseudotuberculosis IP 32953] gi|108808226|ref|YP_652142.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Antiqua] gi|108811507|ref|YP_647274.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Nepal516] gi|149365098|ref|ZP_01887133.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis CA88-4125] gi|162418673|ref|YP_001607184.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Angola] gi|165926835|ref|ZP_02222667.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. F1991016] gi|165935928|ref|ZP_02224498.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. IP275] gi|166011211|ref|ZP_02232109.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. E1979001] gi|166212574|ref|ZP_02238609.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. B42003004] gi|167422709|ref|ZP_02314462.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424621|ref|ZP_02316374.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467011|ref|ZP_02331715.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis FV-1] gi|170023626|ref|YP_001720131.1| two component LuxR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186896169|ref|YP_001873281.1| two component LuxR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218930086|ref|YP_002347961.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis CO92] gi|229838637|ref|ZP_04458796.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895703|ref|ZP_04510874.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Pestoides A] gi|229899203|ref|ZP_04514346.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. India 195] gi|229901771|ref|ZP_04516893.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Nepal516] gi|294504789|ref|YP_003568851.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Z176003] gi|51590361|emb|CAH22001.1| nitrate/nitrite response regulator protein NarP [Yersinia pseudotuberculosis IP 32953] gi|108775155|gb|ABG17674.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Nepal516] gi|108780139|gb|ABG14197.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Antiqua] gi|115348697|emb|CAL21643.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis CO92] gi|149291511|gb|EDM41585.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis CA88-4125] gi|162351488|gb|ABX85436.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Angola] gi|165916073|gb|EDR34680.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. IP275] gi|165921186|gb|EDR38410.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. F1991016] gi|165989889|gb|EDR42190.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. E1979001] gi|166206505|gb|EDR50985.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Antiqua str. B42003004] gi|166958416|gb|EDR55437.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167056503|gb|EDR66272.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750160|gb|ACA67678.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186699195|gb|ACC89824.1| two component transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229681700|gb|EEO77794.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Nepal516] gi|229687605|gb|EEO79678.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. India 195] gi|229695003|gb|EEO85050.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701509|gb|EEO89537.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Pestoides A] gi|262362851|gb|ACY59572.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis D106004] gi|262366775|gb|ACY63332.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis D182038] gi|294355248|gb|ADE65589.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis Z176003] gi|320014400|gb|ADV97971.1| nitrate/nitrite response regulator protein NarP [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 209 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 47/102 (46%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ E +L + A G + +L ++ + LTERE L Sbjct: 98 DAGADGYLLKDCEPEILLENIRQAARGENVFSDEVIQYLSSRHEQVNPFSELTERELDVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 Q G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 158 QEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 199 >gi|332199316|gb|EGJ13394.1| response regulator [Streptococcus pneumoniae GA41317] Length = 199 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEVVMTRPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS T+ Y+ + KLDA NR +A A G++ Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|332304832|ref|YP_004432683.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172161|gb|AEE21415.1| two component transcriptional regulator, LuxR family [Glaciecola agarilytica 4H-3-7+YE-5] Length = 209 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + GY++ S L + G EL LT++E L+ Sbjct: 103 MDSGVKGYLLKDSPSHELIAAIHKVHQGGAAIA----PELMVGSWMEKDPLTDKERRALR 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG ++E+IA KL LS TV YL SA+ KL+A NRI+A A + G++ Sbjct: 159 LAKDGLSTEDIASKLFLSTGTVRNYLSSASNKLNAKNRIEAARIAHQNGWL 209 >gi|300785055|ref|YP_003765346.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794569|gb|ADJ44944.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 219 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 50/114 (43%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAARNLTERETS 180 L + Y++ + L + + + +E +++ L++RE Sbjct: 101 LDYGAAAYLVKSIARDELITAIRSVSRTRDNVLLSIPRATMESLERQQEQRTLLSDRELE 160 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L ++ +IA +L +S TV +L + KL AV+R+ AI KA + I Sbjct: 161 VLRLVAAAMSNAQIASRLFISEGTVKRHLTNIYGKLGAVSRVDAIKKAAKARLI 214 >gi|150395470|ref|YP_001325937.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] gi|150026985|gb|ABR59102.1| regulatory protein LuxR [Sinorhizobium medicae WSM419] Length = 245 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 3/126 (2%) Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 G + + F + + ++F + ++ + + A A Y R Sbjct: 123 RGVSRSYCAVTFSI-GPTRFSLMLLFPEDVILSQDALRDVAVLAGYVASHKIKA--DVRH 179 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A Sbjct: 180 DRECELTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHA 239 Query: 229 IRFGYI 234 +R + Sbjct: 240 VRNNLV 245 >gi|15903856|ref|NP_359406.1| DNA-binding response regulator [Streptococcus pneumoniae R6] gi|116516134|ref|YP_817220.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|168495059|ref|ZP_02719202.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|221232724|ref|YP_002511878.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|15459500|gb|AAL00617.1| Response regulator [Streptococcus pneumoniae R6] gi|116076710|gb|ABJ54430.1| DNA-binding response regulator [Streptococcus pneumoniae D39] gi|183575076|gb|EDT95604.1| response regulator [Streptococcus pneumoniae CDC3059-06] gi|220675186|emb|CAR69771.1| response regulator protein [Streptococcus pneumoniae ATCC 700669] gi|332071979|gb|EGI82467.1| response regulator [Streptococcus pneumoniae GA17545] Length = 199 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEMVMTRPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS T+ Y+ + KLDA NR +A A G++ Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|288923247|ref|ZP_06417387.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288345421|gb|EFC79810.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 227 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN-----LT 175 + GY++ ++ L + A+G + L+L + +A N LT Sbjct: 107 MRAGARGYLLKGADQDELRRAINAVANGEAIFGPGIAARVLDLLGRPPTARVNVAFPELT 166 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L G ++ IA L LS TV ++ + KL +R +A +A G+ Sbjct: 167 AREREILDHLAAGRSNSTIARSLALSPRTVANHVSNIFAKLQVADRTEAAIRAREAGF 224 >gi|312138083|ref|YP_004005419.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|325675013|ref|ZP_08154700.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|311887422|emb|CBH46734.1| LuxR family two component system response regulator [Rhodococcus equi 103S] gi|325554599|gb|EGD24274.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 220 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 10/121 (8%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA----------RNL 174 + ++ L V + A G + + A L Sbjct: 100 AAGAHSFLSKDEAPLTFHQSVRVVASGNTLFSPEALRRIVSESEGTAGSTPVVRPDLSRL 159 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TERE L + +G ++ +I +L L TV +++ + KL NR++A +A R G + Sbjct: 160 TEREREVLTVLAEGESNADIGRRLFLGETTVKSHVSAIFEKLGVRNRVEAALQAYRAGLV 219 Query: 235 C 235 Sbjct: 220 V 220 >gi|38234861|ref|NP_940628.1| two-component response regulator ChrA [Corynebacterium diphtheriae NCTC 13129] gi|38201125|emb|CAE50849.1| two-component response regulator ChrA [Corynebacterium diphtheriae] Length = 199 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + VI G L ++ S + L+ RE LQ Sbjct: 91 AGAMGYLLKDAPESALHDAVIATFEGRRTLAPKVANALMQRVSKPRQALSAREIEILQNL 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ ++A KL +S TV +L KL NR AI A + I Sbjct: 151 EQGLSNRQLAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI 199 >gi|15964400|ref|NP_384753.1| putative transcription regulator protein [Sinorhizobium meliloti 1021] gi|15073577|emb|CAC45219.1| Transcriptional regulator of motility genes, LuxR family [Sinorhizobium meliloti 1021] Length = 245 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 G + + F V G + ++ E ++L+ E + + V + ++ R Sbjct: 123 RGVSRSYCAVTFSV--GRTRFSLMLLFPEDVILSQEALRDIAVLAGYVASHKIK-ADVRH 179 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A Sbjct: 180 DRECELTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHA 239 Query: 229 IRFGYI 234 +R + Sbjct: 240 VRNNLV 245 >gi|238783876|ref|ZP_04627894.1| Two component transcriptional regulator, LuxR family [Yersinia bercovieri ATCC 43970] gi|238715263|gb|EEQ07257.1| Two component transcriptional regulator, LuxR family [Yersinia bercovieri ATCC 43970] Length = 209 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 6/104 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD----FLELFKKRSSAARNLTERETS 180 +GY++ SE +L + A G +V +D +L ++ + LTERE Sbjct: 98 DAGADGYLLKDSEPEILLENIRQAAQGE--KVFSDEVALYLSSRHEQVNPFGELTERELD 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LQ G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 156 VLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 199 >gi|291299247|ref|YP_003510525.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568467|gb|ADD41432.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 188 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 47/115 (40%), Gaps = 6/115 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF---KKRSSAARNLTER 177 L GY++ S +L + G Q+ L + +S+ L+ER Sbjct: 68 LRDGACGYLLKRSGPTLLVEAIRAAMTGDTLISPQITVRLLREMMRPEPKSADTSVLSER 127 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E + L G T+ EIAEKL +S T +L + KL NR+ A A G Sbjct: 128 ELEVVALVAQGLTNAEIAEKLFISAGTAKNHLANVQAKLGVGNRVGIAAWAWETG 182 >gi|254381144|ref|ZP_04996509.1| two-component system response regulator [Streptomyces sp. Mg1] gi|194340054|gb|EDX21020.1| two-component system response regulator [Streptomyces sp. Mg1] Length = 219 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L +G+++ + + + I A G V ++ F R +A+ Sbjct: 95 LHAGASGFLVKDMALEDILSAIRIVAAGDALIAPAVTRRLIKEFTARPAASPPRRAELGA 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +T RE L L G G ++ EIA +L +S+ T YL KLDA +R+Q + A G Sbjct: 155 ITAREREVLTLVGRGLSNTEIAGELCISIATAKTYLTRLLAKLDARDRVQLVILAYEAGL 214 Query: 234 IC 235 + Sbjct: 215 VA 216 >gi|297197337|ref|ZP_06914734.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714865|gb|EDY58899.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 227 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLEL-----FKKRSSAA 171 L +G++ L + A G A +IT FL + Sbjct: 97 LRSGASGFLGKDVTADALLAGIRTVAAGDSLLSPGATRTLITRFLAAPGLGTRLAAADDL 156 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + +G+++E+IAEKL +S TV ++ A KL A +R Q + A + Sbjct: 157 TGLTGREREVMAWVAEGHSNEKIAEKLFVSPLTVRTHVHRAMTKLGARDRAQLVVMAYQS 216 Query: 232 GYI 234 G + Sbjct: 217 GLV 219 >gi|308187717|ref|YP_003931848.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans C9-1] gi|308058227|gb|ADO10399.1| Nitrate/nitrite response regulator protein narP [Pantoea vagans C9-1] Length = 209 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE +L ++ + G + + +L + + R LT RE L Sbjct: 99 DAGADGYLLKDSEPEILLGHILQASQGEKVFSEGVARYLANRQHSADPLRQLTGRECDVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G +++EIA L +S TV ++ + KLD +R+ A Sbjct: 159 QEVARGLSNKEIAANLHISEETVKVHIRNLLRKLDVRSRVAATV 202 >gi|262283291|ref|ZP_06061057.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA] gi|262260782|gb|EEY79482.1| DNA-binding response regulator [Streptococcus sp. 2_1_36FAA] Length = 199 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + ++ L+++E LQ A Sbjct: 95 ADVDAYVLKERSIADLMKTIHTVLDGQKEY----SPELMEVLMTSRNPLSQQERLVLQAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIAEKL LS TV Y+ + KLDA NR +A+ G++ Sbjct: 151 ATGLSNKEIAEKLFLSNGTVRNYMSAILTKLDAENRTEAVRIGQEKGWL 199 >gi|5639944|gb|AAD45903.1|AF161327_2 response regulator ChrA [Corynebacterium diphtheriae] Length = 199 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + V+ G L ++ S + L+ RE LQ Sbjct: 91 AGAMGYLLKDAPESALHDAVVATFEGRRTLAPEVANALMQRVSKPRQALSAREIEILQNL 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ ++A KL +S TV +L KL NR AI A + I Sbjct: 151 EQGLSNRQLAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI 199 >gi|325686801|gb|EGD28826.1| DNA-binding response regulator [Streptococcus sanguinis SK72] Length = 199 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + ++ L+++E LQ A Sbjct: 95 ADVDAYVLKERSIADLMKTIQTVLDGQKEY----SPELMEVLMTSRNPLSQQERLVLQAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIAEKL LS TV Y+ + KL+A NR +A+ G++ Sbjct: 151 ATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENRTEAVRIGQEKGWL 199 >gi|298251534|ref|ZP_06975337.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546126|gb|EFH79994.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 201 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G+++ + LA+ + HG +V+ L L S LT RE L A Sbjct: 97 GAVGFLLKDAPASELASALRRVMHGE--RVVDPELALL-ALSEGNNPLTHREREVLVAAL 153 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA +L LS TV +L +A KL A NR++A A + G++ Sbjct: 154 PGLSHAEIATRLALSEGTVRNHLSAAMQKLGAHNRMEAARLAEQKGWL 201 >gi|295840294|ref|ZP_06827227.1| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74] gi|295827900|gb|EFG65696.1| LuxR family DNA-binding response regulator [Streptomyces sp. SPB74] Length = 231 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRS--SAARNL 174 LG GYV+ + L GA +I ++L+ ++ S L Sbjct: 110 LGSGAGGYVLKSLADRDLIEACRAAMRDEPFLYPGATGALIRNYLDRARRGEDLSGGSPL 169 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L +G++S++IA L +SV TV + + KL +R++ AIR G + Sbjct: 170 TPREEEILKLVAEGHSSKDIAALLVISVKTVERHRANTLHKLGLKDRLELTRYAIRAGLV 229 >gi|297199299|ref|ZP_06916696.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197717164|gb|EDY61198.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 210 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ LA + G + D S+ LT RE L+ + Sbjct: 105 AGAAGFLVKDGPVEELAASIRRVLTGET---VIDPALAAAALSAGPSPLTGRECDVLRAS 161 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T +IA++L LS TV YL SA K NR++A+ A + G++ Sbjct: 162 TDGATVADIADRLHLSESTVRNYLSSAIGKTGTRNRMEAVRAARQQGWL 210 >gi|307128200|ref|YP_003880231.1| response regulator [Streptococcus pneumoniae 670-6B] gi|306485262|gb|ADM92131.1| response regulator [Streptococcus pneumoniae 670-6B] Length = 199 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEVVMTRPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS T+ Y+ + KLDA NR +A A G++ Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|300863456|ref|ZP_07108411.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300338519|emb|CBN53553.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 244 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 39/64 (60%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 A LTERE ++L +G ++EEI ++L +S+ TV ++ + KL +R QA +A+R Sbjct: 180 ANPLTEREKEVIELIVEGCSNEEICKQLYISLGTVKTHVRNILNKLSCDDRTQAAVRALR 239 Query: 231 FGYI 234 G + Sbjct: 240 AGLV 243 >gi|282856726|ref|ZP_06265990.1| two component transcriptional regulator, LuxR family [Pyramidobacter piscolens W5455] gi|282585422|gb|EFB90726.1| two component transcriptional regulator, LuxR family [Pyramidobacter piscolens W5455] Length = 215 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ TS + L + G Y + + S+ L+ RE L Sbjct: 94 LSAGARGFIVKTSAVMELTQALQSVIGGGIY-LDSAIANSVDSASNELEQLSPREREVLL 152 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G+ +E+A KL ++ TV A+L S K A N+ +A+ A++ G I Sbjct: 153 LSSQGFPVKEVAAKLFITERTVQAHLSSVYAKFGAKNKTEALIIALKNGII 203 >gi|284030392|ref|YP_003380323.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809685|gb|ADB31524.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 217 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL----TERETSC 181 GY++ + L + + + G L + + A + RE Sbjct: 99 AGAAGYLLKDTPHAELLDGIRAASRGETVLAPPVAARLMSRLRTPAAPAAVQPSPRELEV 158 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EI +L + TV +L KLD +R +A+ AI G + Sbjct: 159 LAAVARGLSNAEIGRELFIGEATVKTHLQRLFSKLDVDDRTRAVTVAIERGLL 211 >gi|21219768|ref|NP_625547.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289773037|ref|ZP_06532415.1| two-component system response regulator [Streptomyces lividans TK24] gi|9368908|emb|CAB99140.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] gi|289703236|gb|EFD70665.1| two-component system response regulator [Streptomyces lividans TK24] Length = 220 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----------RSSAAR 172 L +G+++ + + + V + A G +L + A Sbjct: 96 LRAGADGFLLKRARPAEIVHAVRLIAEGESLLFPASVRQLAAEYGDGGGNRAARAELARA 155 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L + TV +++ + KL A +R QA+ A G Sbjct: 156 RLTEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESG 215 Query: 233 YIC 235 ++ Sbjct: 216 FVA 218 >gi|158313488|ref|YP_001505996.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158108893|gb|ABW11090.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 217 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----------N 173 L +G+++ L V + G T L ++ +S R Sbjct: 91 LTAGASGFLLKDVSPEQLVAAVRLVRAGDALLAPTITRRLVERFASPERVAAATHRDLAT 150 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+ G ++ E+A + LS TV ++ KL +R+QA+ A G Sbjct: 151 LTPRELEVLRFLARGLSNAELAARFQLSEATVKTHVARILGKLRLRDRVQAVVVAYETGL 210 Query: 234 IC 235 + Sbjct: 211 VT 212 >gi|314924490|gb|EFS88321.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|315094740|gb|EFT66716.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315102902|gb|EFT74878.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327328589|gb|EGE70349.1| two-component system response regulator [Propionibacterium acnes HL103PA1] Length = 242 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFL------ELFKKRSSA 170 L +G+++ + L + G A ++I F+ Sbjct: 115 LRAGASGFMLKDAGPTELLAAIRAVRDGDSVVAPSATRRLIERFIPRQGEGAATTTDPKL 174 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A Sbjct: 175 VETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYD 234 Query: 231 FGYI 234 G + Sbjct: 235 AGLV 238 >gi|225181065|ref|ZP_03734512.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225168262|gb|EEG77066.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 207 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 6/106 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA------CYQVITDFLELFKKRSSAARNLTERETS 180 GY++ + + + + G + L+ KK+ A+ LT+RE Sbjct: 96 GAEGYLLKNQSLDSIVDSLRVVGEGNTVFQKEVAGTLHAILKGEKKKDPASFQLTKREFE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L+L G+G +++EIA+KL L+ TV Y+ + VKL+ +R Q Sbjct: 156 VLKLVGEGLSNDEIAQKLFLTPGTVRNYISNLLVKLNLRDRTQLAI 201 >gi|126739386|ref|ZP_01755079.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. SK209-2-6] gi|126719486|gb|EBA16195.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. SK209-2-6] Length = 203 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 45/110 (40%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ T L N V + G Y + E A L+ RE L+ Sbjct: 93 LEAGAIGFIPKTMGAQSLLNAVRFMSSGEVYMPVELMREEEATDHPLAEKLSPRELEVLE 152 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G +++EIA +L L T+ ++ + KLDA NR QA A G Sbjct: 153 SLCKGLSNKEIARELDLQEVTIKLHVRTLCRKLDAKNRTQAALTAKEAGL 202 >gi|325927834|ref|ZP_08189059.1| two component transcriptional regulator, LuxR family [Xanthomonas perforans 91-118] gi|325541824|gb|EGD13341.1| two component transcriptional regulator, LuxR family [Xanthomonas perforans 91-118] Length = 200 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ L + + G +V+ + + + + +L+ RE L+ Sbjct: 90 LKSGARGFMLKGMMRKELRDTIRAVHAG--RRVVPAEIAMELAQHAGEDDLSPREMEVLR 147 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIAE L ++ TV A++ KL A +R A+ A++ G + Sbjct: 148 ELARGNANREIAESLSVTEGTVKAHMKRILSKLGAKDRTHAVLLALKRGIL 198 >gi|260914572|ref|ZP_05921040.1| nitrate/nitrite response regulator protein NarL [Pasteurella dagmatis ATCC 43325] gi|260631363|gb|EEX49546.1| nitrate/nitrite response regulator protein NarL [Pasteurella dagmatis ATCC 43325] Length = 209 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L ++ + G I + L + + +LT+RE L Sbjct: 98 DAGADGYLLKDTEPDTLLGQIKRISQGEVILSDSIKNALIERQSATDPIYSLTDREMDVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +L G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 158 RLIATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|256392927|ref|YP_003114491.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359153|gb|ACU72650.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 236 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNL-- 174 L +G++ + L + + A G A +I FL L L Sbjct: 108 LRSGASGFLGKGARPDALIDAIRTVARGDALLSPSATRGLIARFLSLQDTEPVHPSPLLT 167 Query: 175 --TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T+RE L DG ++ +IA +L LS TV ++ A KL A +R Q + A + G Sbjct: 168 TLTDRERELTALVADGMSNTDIARQLTLSPLTVKTHVNHAMTKLGARDRAQLVVLAYQTG 227 Query: 233 Y 233 Sbjct: 228 L 228 >gi|298241134|ref|ZP_06964941.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554188|gb|EFH88052.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 220 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERE 178 +GY++ + + + V + A G +++ +L + S A LTERE Sbjct: 98 AGAHGYLLKGAGLDEVLHAVRVVAAGGSLLEPAVTERLLGSMEQLL-RSGSIAEMLTERE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G++++ I ++L L+ TV + KL A NR QA+AKA++ I Sbjct: 157 RMILTYMAQGFSNKMIGQELHLAERTVKFHTTILFQKLQASNRAQAVAKALQERLI 212 >gi|295680777|ref|YP_003609351.1| LuxR family transcriptional regulator [Burkholderia sp. CCGE1002] gi|295440672|gb|ADG19840.1| two component transcriptional regulator, LuxR family [Burkholderia sp. CCGE1002] Length = 222 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLE-----LFKKRSSAARNLT 175 L + + + + A G C ++ L K + LT Sbjct: 102 LPADAMAILPRNAMPAEIVASIEAVAAGLCVLTPDILARLLAETRPSRQKAPAEPFEALT 161 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L + DG ++EIA +L +S +TV +L S KL A NR +A+ +R G+I Sbjct: 162 LREIEVLAMLADGLGNKEIARQLDISDNTVKFHLSSIFGKLGATNRTEAVMLGMRHGFI 220 >gi|158313806|ref|YP_001506314.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158109211|gb|ABW11408.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 216 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 45/112 (40%), Gaps = 6/112 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSS---AARNLTERET 179 GY++ L + A G V L ++ + A+ L+ RE Sbjct: 103 AGAAGYLLKQIRGTDLVGAIRTIAAGGSLLDPAVTARVLARLREGTDVGRASAVLSTRER 162 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G T+ +IA +L LS TV Y+ S KL +R QA A R Sbjct: 163 EILVLIAEGLTNRQIAGRLHLSEKTVKNYVSSILDKLGLSSRTQAAVYAARR 214 >gi|312863667|ref|ZP_07723905.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] gi|311101203|gb|EFQ59408.1| response regulator receiver domain protein [Streptococcus vestibularis F0396] Length = 200 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + YV+ L + G EL + + L++RE L Sbjct: 93 LAAQVDAYVLKERSISDLMATIHTVLAGQKEY----SPELVEGVAFDNNPLSQREQEVLA 148 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T++EIAE L LS TV Y+ + KLDA NR +A+ A ++ Sbjct: 149 MVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTEAVRIAKEKDWL 199 >gi|192359370|ref|YP_001983632.1| response regulator [Cellvibrio japonicus Ueda107] gi|190685535|gb|ACE83213.1| response regulator [Cellvibrio japonicus Ueda107] Length = 225 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTERET 179 GY++ ++ L L E I E + + + +R ++ LT RET Sbjct: 110 AGAVGYLLKDADSLELV-EAIQELRAGRSPISSSIARILVRRMGGSTPATPTPELTPRET 168 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G+T E+AE LG+S HTV ++ + KL A NR +A+ +A + G I Sbjct: 169 EILRGIAKGFTYTELAEWLGISRHTVPVHIKNIYRKLAANNRSEAVYEASKRGLI 223 >gi|149376825|ref|ZP_01894582.1| putative transcriptional regulator [Marinobacter algicola DG893] gi|149358946|gb|EDM47413.1| putative transcriptional regulator [Marinobacter algicola DG893] Length = 898 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 54/102 (52%), Gaps = 5/102 (4%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + L + + ++A G Y + K+++S A +++RE L+L G +++ Sbjct: 802 LLEKTWPQLPDTLFVDAIGRLYGLTD-----MKEQASLAEPISDREQGVLELIAQGLSNQ 856 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +IA++L +S+HTV + KL+ +R QAI +A G + Sbjct: 857 DIADRLHISLHTVKTHARRINAKLEVKSRTQAIVRARELGLL 898 >gi|295697536|ref|YP_003590774.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] gi|295413138|gb|ADG07630.1| two component transcriptional regulator, LuxR family [Bacillus tusciae DSM 2912] Length = 278 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 38/71 (53%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K LT+RE LQL +G ++ +IA+ L LS TV ++ S KL +R QA Sbjct: 206 DKAPGIVAPLTKREFEVLQLLAEGRSNRDIAKALVLSEKTVKNHVASILDKLVVRDRTQA 265 Query: 225 IAKAIRFGYIC 235 + A+R G++ Sbjct: 266 VLVALRRGWVT 276 >gi|269217550|ref|ZP_06161404.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] gi|269212485|gb|EEZ78825.1| DNA-binding response regulator [Actinomyces sp. oral taxon 848 str. F0332] Length = 202 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +G+V+ + LA+ V G Q + D + ++++ LTERE L+ Sbjct: 97 AGASGFVVKDAPSDSLASAVRKVMAG---QRVVDPDLAAESLAASSNPLTEREQDVLRAT 153 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ +++ L LS TV YL SA K A R +A+ A G++ Sbjct: 154 SDGGTTADVSRSLFLSQGTVRNYLSSAIHKTGARTRAEAVVIARDNGWL 202 >gi|226228720|ref|YP_002762826.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226091911|dbj|BAH40356.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 210 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 46/111 (41%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + G + I + + LT RE L+ Sbjct: 99 LSAGARGYLLKDTLRTELLQVIRNVYRG--LRGIPAPVAARLAEYTPRVALTARELEVLE 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ +IA +LG + T+ ++ + KL +R A+ A+R G I Sbjct: 157 LMAQGLSNPDIAIRLGRAESTMKVHVRNILQKLGTDDRTAAVTTALRRGII 207 >gi|221069868|ref|ZP_03545973.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] gi|220714891|gb|EED70259.1| two component transcriptional regulator, LuxR family [Comamonas testosteroni KF-1] Length = 230 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L NGYV+ + L + + G ++I + + A Sbjct: 108 LRAGANGYVLKERDDLEVTLSIRSVLRGGAPIDPFIARRIIAELQPAQPTEAHKAMPPEA 167 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE L+L DG T+ EIAE L LS +TV ++ + KL +R +A+++A G Sbjct: 168 VLSTRELQILKLVADGMTNREIAESLFLSRYTVECHVKNIYRKLAVPSRTKAVSEARARG 227 Query: 233 YI 234 + Sbjct: 228 LL 229 >gi|86356298|ref|YP_468190.1| LuxR family transcriptional regulator [Rhizobium etli CFN 42] gi|86280400|gb|ABC89463.1| probable transcriptional regulator protein, LuxR family [Rhizobium etli CFN 42] Length = 234 Score = 95.8 bits (237), Expect = 4e-18, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 89/229 (38%), Gaps = 24/229 (10%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTIN----SALDFPRRQQLICELHNYDLDSGDIPN 66 + L L + + + A ++ L + S LDF ++ +DL DI N Sbjct: 25 VADTGRLQSGLRALTDYVGASHYLLARCDLIQESGLDF-----IVSSDWPFDLVR-DIAN 78 Query: 67 ILIETYGDDF-LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 L+ TY L P ++ + EG + + F +G Sbjct: 79 DLVSTYARSTELEKCMQVFQP-------NFALLPEGADVP---EGASRQYCSLTF--NVG 126 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + + E +L+ E + + G I FL + LT+RE CL Sbjct: 127 RSRLALMFLFGEGFILSPERLRDV-GLLAGYIASFLRCGGAKVDRDFELTDRELECLFWI 185 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 186 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 234 >gi|306841639|ref|ZP_07474330.1| two component LuxR family transcriptional regulator [Brucella sp. BO2] gi|306288280|gb|EFM59656.1| two component LuxR family transcriptional regulator [Brucella sp. BO2] Length = 234 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L GYV+ + L + + G ++I + K + L+ Sbjct: 116 LRAGATGYVLKERDDLEVMLALRSVLRGGAPIDPFVARRIIEELPLQSAKEKADNAGLSP 175 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +G + +IAE+L LS HT+ A++ + KL +R QA A + G + Sbjct: 176 RENEILRLVSEGLGNRDIAEQLFLSRHTIEAHIKNIYRKLAVSSRTQAAQAARQRGLL 233 >gi|284990521|ref|YP_003409075.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063766|gb|ADB74704.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 232 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKR--------- 167 L +G++ + E L + + + A G A +I FL + Sbjct: 97 LRSGASGFLGKSVEPDELLDAIRVVARGDALLSPRATRSLIARFLAQPGRSGPDPDGPAP 156 Query: 168 -SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +A LTERE + L G ++E+IA +L LS TV ++ A KL A +R Q + Sbjct: 157 VDAALDVLTEREREMVALVAHGLSNEDIAARLHLSPLTVKTHVNRAMSKLRARDRAQLVV 216 Query: 227 KAIRFGYI 234 A + G + Sbjct: 217 LAYQTGLV 224 >gi|256378465|ref|YP_003102125.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922768|gb|ACU38279.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 215 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 8/118 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK-----RSSAARNLTE 176 G+ + ++ L V A G + ++ L +++ ++A LT Sbjct: 94 DAGAAGFELKSATPENLIEAVRTVAGGGTWIDGTMLGPVLASYRRFGRPAPANAPGELTG 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G ++ EIA +L L+ TV ++G+ KL A +R AI A G + Sbjct: 154 RELDVLRLMARGASNREIAGRLCLAETTVKTHVGAIFGKLGARDRAAAIVFAYDSGIV 211 >gi|83643206|ref|YP_431641.1| response regulator [Hahella chejuensis KCTC 2396] gi|83631249|gb|ABC27216.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Hahella chejuensis KCTC 2396] Length = 207 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 3/110 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQL 184 GYV +S ++A+ + + G Y + + L + LT R+ L L Sbjct: 99 GALGYVPKSSSNAVIASAIQLMLSGGVY-IPHELLRTGHDEGMPTGDICLTPRQHEVLGL 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++++I KL ++ T+ A++ + +L+A NR QA+ +A + Sbjct: 158 LAEGMSNKQIGTKLSIAPGTIKAHIAAIFRELNAANRTQAVHRARELKLL 207 >gi|255324053|ref|ZP_05365178.1| transcriptional regulatory protein DegU [Corynebacterium tuberculostearicum SK141] gi|255298910|gb|EET78202.1| transcriptional regulatory protein DegU [Corynebacterium tuberculostearicum SK141] Length = 205 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 42/109 (38%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L V+ A L ++ +L+ RE L+ Sbjct: 97 AGAMGYLLKDSPEQALHEAVLNTAAHRRTLAPEVVDLLAQRVGRPQESLSARELEILRAL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A++L +S TV +L KL R A+ A I Sbjct: 157 SSGSSNKELAKQLFISEATVKTHLIHIFQKLGVETRTAAVTVARERKLI 205 >gi|315295459|gb|EFU54787.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 153-1] Length = 230 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 5/115 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTEREL 169 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++++IA L +S TV ++ + KL+ +R+ A ++ I Sbjct: 170 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQQRII 224 >gi|150376486|ref|YP_001313082.1| two component LuxR family transcriptional regulator [Sinorhizobium medicae WSM419] gi|150031033|gb|ABR63149.1| two component transcriptional regulator, LuxR family [Sinorhizobium medicae WSM419] Length = 219 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 8/110 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--------QVITDFLELFKKRSSAARNLT 175 L GY++ LA+ + A G Y + L +S+ LT Sbjct: 96 LKEGAKGYILKGIGARALADVIRTVASGESYVAPTLSAKLLTGQLLNPAPAKSNLVAELT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RE L L G ++++IA KL L TV ++ KL+ NR +A Sbjct: 156 RREQEVLHLVASGMSNKQIARKLDLHEKTVKHHMTQIMAKLNVANRTEAA 205 >gi|114571288|ref|YP_757968.1| two component LuxR family transcriptional regulator [Maricaulis maris MCS10] gi|114341750|gb|ABI67030.1| two component transcriptional regulator, LuxR family [Maricaulis maris MCS10] Length = 201 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 8/136 (5%) Query: 104 LSVRLEGGLLPFAGIAFPVR----LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD 159 + + + +G+A P+ L G++ T L V + G + I Sbjct: 70 MKRHADQPVAILSGMASPMEVQMLLENGARGFIPKTMPADGLVAAVRLILAGQVFSPIHH 129 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 + + +LT RE L G ++EIA L + TV +L S ++KLDA Sbjct: 130 TTD----PENEPASLTPREREVLFCLQRGEANKEIARSLEIQETTVKLHLRSLSLKLDAR 185 Query: 220 NRIQAIAKAIRFGYIC 235 NR + + KAI+ G++ Sbjct: 186 NRTEVVVKAIQAGFLA 201 >gi|324989912|gb|EGC21854.1| DNA-binding response regulator [Streptococcus sanguinis SK353] Length = 199 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + ++ L+++E LQ A Sbjct: 95 ADVDAYVLKERSIADLMKTIQTVLDGQKEY----SPELMEVLMTSRNPLSQQERLVLQAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIAEKL LS TV Y+ + KL+A NR +A+ G++ Sbjct: 151 ATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENRTEAVRIGQEKGWL 199 >gi|300790143|ref|YP_003770434.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299799657|gb|ADJ50032.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 217 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN------- 173 L NG+++ + L V + G V ++ + AA+ Sbjct: 95 LRLGANGFLLKDIDPAALLRAVRDLSRGGAVLDPGVAARMVQSHRDEQRAAQPARKLLAS 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE + L G G ++ EI +L LS TV Y+ + K+ A NR+QA A R G Sbjct: 155 LSEREREVVALIGQGLSNAEIGGRLHLSEATVKGYVSAVLSKIGAANRVQAALLAYRGGL 214 Query: 234 I 234 + Sbjct: 215 L 215 >gi|238062942|ref|ZP_04607651.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237884753|gb|EEP73581.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 217 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 52/123 (42%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR---- 172 L G+++ + + L + A G Y QVI R++ AR Sbjct: 94 LDSGARGFLLKSGDPRELLTGIHAIADGGAYLSPDITAQVIGRLRATGLGRAAEARAKVQ 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G G ++ +IA +L L TV ++ + +L NR+QA A G Sbjct: 154 QLTDRERDVLALVGAGLSNAQIARRLHLVEGTVKGHVSTILARLGLANRVQAAVLAHEAG 213 Query: 233 YIC 235 + Sbjct: 214 LVT 216 >gi|125718762|ref|YP_001035895.1| two-component response transcriptional regulator [Streptococcus sanguinis SK36] gi|323350426|ref|ZP_08086089.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|125498679|gb|ABN45345.1| Two-component system transcriptional regulator (CheY domain and HTH-like DNA-binding domain), putative [Streptococcus sanguinis SK36] gi|322123363|gb|EFX95041.1| DNA-binding response regulator [Streptococcus sanguinis VMC66] gi|327462857|gb|EGF09179.1| DNA-binding response regulator [Streptococcus sanguinis SK1057] Length = 199 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + ++ L+++E LQ A Sbjct: 95 ADVDAYVLKERSIADLMKTIQTVLDGQKEY----SPELMEVLMTSRNPLSQQERLVLQAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIAEKL LS TV Y+ + KL+A NR +A+ G++ Sbjct: 151 ATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENRTEAVRIGQEKGWL 199 >gi|158315190|ref|YP_001507698.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158110595|gb|ABW12792.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 226 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ L + + A G A +I+ FL + ++A N Sbjct: 97 LRVGASGFLGKDVGTDELLSAIRTVAGGDALLSPAATRVLISRFLATPEPAATATVNPVA 156 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE + L +GY++ EIA++L +S T ++ A KL+A +R Q + A + Sbjct: 157 LAALTAREREVMALVAEGYSNHEIADRLVISPLTARTHVHRAMAKLNARDRAQLVVIAYQ 216 Query: 231 FGYI 234 G + Sbjct: 217 SGLL 220 >gi|300918841|ref|ZP_07135409.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 115-1] gi|300414022|gb|EFJ97332.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 115-1] Length = 225 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F + LTERE Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAKEDPFSVLTEREL 169 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 170 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|256789144|ref|ZP_05527575.1| two-component system response regulator [Streptomyces lividans TK24] Length = 216 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-----------RSSAAR 172 L +G+++ + + + V + A G +L + A Sbjct: 92 LRAGADGFLLKRARPAEIVHAVRLIAEGESLLFPASVRQLAAEYGDGGGNRAARAELARA 151 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L + TV +++ + KL A +R QA+ A G Sbjct: 152 RLTEREGEVLRLMARGLSNAEIAARLVVGTETVKSHVSAVLAKLGARDRTQAVITAYESG 211 Query: 233 YIC 235 ++ Sbjct: 212 FVA 214 >gi|331698232|ref|YP_004334471.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326952921|gb|AEA26618.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 204 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 35/104 (33%), Positives = 48/104 (46%), Gaps = 3/104 (2%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 +V+ S L + V G +V+ L + S LTERE L A DG T Sbjct: 104 FVVKDSPPEQLVDAVRRVHAG--LRVVDPALA-AESLSQGTSPLTERERDVLVAAADGAT 160 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +IA +L LS TV +L SA K DA R +A+ A G++ Sbjct: 161 VADIARRLHLSEGTVRNHLSSAIGKTDARTRAEAVRIADGNGWL 204 >gi|300787038|ref|YP_003767329.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796552|gb|ADJ46927.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 215 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 4/112 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY----QVITDFLELFKKRSSAARNLTERETSCL 182 G ++ +++ +L + V A G + F L + S LT RE L Sbjct: 103 GGAGLLLKSAQLGVLESAVRDVAAGGVVFDPELLPGVFDRLTGRGSGGGAALTARERETL 162 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G T++EI +LG+S +T ++ KL A ++++A+A A R G I Sbjct: 163 DLLAEGATTDEIGARLGVSRNTTRNHVQRVLEKLGARSKLEAVAVARREGLI 214 >gi|116622583|ref|YP_824739.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225745|gb|ABJ84454.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 210 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + V A G + L +A LT RE LQ Sbjct: 98 LEAGVRGYLLKNALDLEMVAAVKQVAAGKQV-LDRRLGALDLPSGAAPAGLTTRELEVLQ 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G +++EIA L LS +TV + + L N + + AIR G + Sbjct: 157 LIVHGKSNKEIAAVLSLSANTVAVHRANIMQTLGIHNTAELVVYAIRQGLVS 208 >gi|325924567|ref|ZP_08186081.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] gi|325544945|gb|EGD16285.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas gardneri ATCC 19865] Length = 210 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLEL---FKKRSSAARNLTERETS 180 G+++ + L + A G V TD + F+ + +ERE + Sbjct: 97 AGAQGFLLKDAAPEDLREAIERVASGETLLQPVSTDPVRARYQFRDQQPPRETFSEREVA 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY+++EIA L L+ TV Y+ + KL +R +A+ KAI I Sbjct: 157 ILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210 >gi|182413518|ref|YP_001818584.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177840732|gb|ACB74984.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 213 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 7/120 (5%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARNLT 175 L Y++ SE + + + G + I + S +++T Sbjct: 93 TLRAGAMAYILKGSESQEIVHALKEVLAGRRFLSAPLSEWAINALVTKPADNSDPLQSIT 152 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE LQLA +G ++ EIAEKL +S T + + KL + + AIR G I Sbjct: 153 PRERMVLQLAAEGASNSEIAEKLFISPRTAETHRTNLLRKLGLQTQTDLVRFAIRKGLIS 212 >gi|222082720|ref|YP_002542085.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221727399|gb|ACM30488.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 217 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 6/114 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA---RNLTERETS 180 +GY++ L + I G + ++ L + S A LT RE Sbjct: 99 GASGYLLKDVSRESLLRTIDIVLDGQAFFDADLMCKMLARIDRESPAEMVIERLTNRERE 158 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G T++ IA L +S TV ++ KL +R QA AI+ G + Sbjct: 159 ILCSLTTGETNKGIARALSISPGTVKVHVERILSKLGVNDRTQAAVLAIQAGLL 212 >gi|57233907|ref|YP_182061.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224355|gb|AAW39412.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] Length = 225 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query: 143 NEVIIEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 NE ++ + QV+ F + L K S+ LT R+ L L +G T+++IA L Sbjct: 129 NESLMTSPNLAKQVLAQFQDVSLLGKDASNFVTPLTNRKKQILTLIANGNTNKQIANNLE 188 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S T+ ++ + KL+A +R A+ AIR G I Sbjct: 189 ISEQTIKNHVSAILRKLNANDRAHAVVVAIRCGLI 223 >gi|260578669|ref|ZP_05846577.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] gi|258603166|gb|EEW16435.1| DNA-binding response regulator [Corynebacterium jeikeium ATCC 43734] Length = 200 Score = 95.8 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +G+++ + LA+ + H + + + + L+ERET Q Sbjct: 96 GVDGFIVKDTPPEELADAIRRV-HAGLRVIDPTLAQ--ESLLTPDNPLSERETEVCQQLF 152 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +S IA+ L LS TV ++ S K A NR +A A G+I Sbjct: 153 EGKSSPAIAKALHLSPGTVRNHISSIMTKTGAGNRYEAAHVAKTNGWI 200 >gi|302533866|ref|ZP_07286208.1| two component transcriptional regulator [Streptomyces sp. C] gi|302442761|gb|EFL14577.1| two component transcriptional regulator [Streptomyces sp. C] Length = 218 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 12/124 (9%) Query: 122 VRLGFHK--NGYVIFTSEFLMLANEVIIEAH---GACYQVITDFLELFKKRSSAAR---- 172 V H +G+++ + ML V A + L R+ AAR Sbjct: 90 VHAALHGGASGFLLKDASPAMLVEAVRAAAAGDALVSPAITVRLLRDMAPRTPAARTARR 149 Query: 173 ---NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LTERE ++ G T+ EIA +L +S+ TV +L + KLDA NR++ A A Sbjct: 150 PAEPLTERERDVVRCLARGLTNAEIAAELYVSLSTVKTHLANVQAKLDARNRVEIAAWAW 209 Query: 230 RFGY 233 G Sbjct: 210 ESGL 213 >gi|288916739|ref|ZP_06411113.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288351813|gb|EFC86016.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 225 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L + +V+ LA V A G ++I F E S+ AR Sbjct: 96 LRAGASAFVLKDIPADQLAVAVRTVADGGALIAPSITRRLIGRFTERRPVSSTVARRVER 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE + G ++ EIA++L + TV +++ S KL +R Q + A G Sbjct: 156 LTDRERDVVVAVARGSSNSEIAKELFIGPATVKSHVSSILTKLGLRDRAQVVVFAYESGL 215 Query: 234 I 234 + Sbjct: 216 V 216 >gi|256786843|ref|ZP_05525274.1| two-component system regulator [Streptomyces lividans TK24] gi|289770738|ref|ZP_06530116.1| two component system response regulator [Streptomyces lividans TK24] gi|289700937|gb|EFD68366.1| two component system response regulator [Streptomyces lividans TK24] Length = 248 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 19/130 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA----CYQVITDFLELFKKRSSAAR------- 172 L +G+++ + L V HG V +E F + + R Sbjct: 113 LRAGASGFLLKDAGPERLLAAV-TAVHGGDALFAPAVTRRLVEAFTRMTDTGRADPPDAG 171 Query: 173 -------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LT RE L+L G G ++ E A++L +S TV +L KL +R QA+ Sbjct: 172 PPPPALTTLTGREAEVLRLVGRGLSNAEAADRLFISEATVKTHLNRTMSKLGLTSRAQAV 231 Query: 226 AKAIRFGYIC 235 A G + Sbjct: 232 VVAYETGLVT 241 >gi|269837299|ref|YP_003319527.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269786562|gb|ACZ38705.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 219 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----------KRSSAARNL 174 G + + + + V G + + +E + + A L Sbjct: 97 ASGAAGILHKSVPVGDVVDAVRRLNAGEQLLTVAEVVEALRFVDQERRREREARQAFEPL 156 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE LQ DG + +EIAE+L +S TV ++ + KLDA +R+QA+ A R + Sbjct: 157 TDREREVLQALADGLSDKEIAERLYISPATVRTHITAILGKLDANSRLQAVVVAARHNLV 216 Query: 235 C 235 Sbjct: 217 T 217 >gi|297564548|ref|YP_003683520.1| LuxR family two component transcriptional regulator [Meiothermus silvanus DSM 9946] gi|296848997|gb|ADH62012.1| two component transcriptional regulator, LuxR family [Meiothermus silvanus DSM 9946] Length = 204 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 44/110 (40%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ + + L + G L + + +LT +E L Sbjct: 95 LSLGASGYLVKHAGPVALLEGIRAAGRGEVPLDPAAVRLLARPARNPLASLTPKEREVLT 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G +++ IA+ LG+S T+ ++ S KL+ R QA A G Sbjct: 155 HLARGMSNKAIAQALGVSEKTIKTHVSSLLAKLNLKGRTQAALLAREQGL 204 >gi|158315625|ref|YP_001508133.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111030|gb|ABW13227.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 217 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 11/144 (7%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 + +++ + +E FA + GY++ ++ L + AHG Sbjct: 74 AELPDTAVLVVTMVEDDASVFAAMC------AGARGYLLKGADQDELRRAITAVAHGEAI 127 Query: 155 ---QVITDFLELF--KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 +V L L R LT+RE L G + IA L +S TV ++ Sbjct: 128 FGSRVAARVLALLAHPPREVPFPQLTDRERQVLDELARGRNNASIARVLNVSTRTVANHV 187 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 + KL +R +AI +A G Sbjct: 188 STIFAKLQLADRAEAIVRAREAGL 211 >gi|312140713|ref|YP_004008049.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311890052|emb|CBH49370.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 222 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 48/119 (40%), Gaps = 9/119 (7%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA--ARNLT 175 +G+++ L + G +++ + ++ ++T Sbjct: 95 SAGASGFLLKDVPPEELLAAIRTVHRGDAVIEARSTRKLLQHVGPMLSDSAAPSLPEDMT 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ G ++ EIA+K +S TV ++G K + +R+QA+ A + G + Sbjct: 155 PREIEVLEAMAHGLSNSEIAQKFVVSEATVKTHVGRVLSKTGSRDRVQAVVYAFQVGLV 213 >gi|293415492|ref|ZP_06658135.1| two-component system [Escherichia coli B185] gi|291433140|gb|EFF06119.1| two-component system [Escherichia coli B185] Length = 225 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLHEREMFGAEEDPFSVLTEREL 169 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 170 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|2916781|emb|CAA11948.1| unnamed protein product [Sinorhizobium meliloti] Length = 245 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 3/126 (2%) Query: 109 EGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 G + + F V G + ++ E ++L+ E + + V + ++ R Sbjct: 123 RGVSRSYCAVTFSV--GRTRFSLMLLFPEDVILSQESLRDIAVLAGYVASHKIK-ADVRH 179 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A Sbjct: 180 DRECELTERELECLFWIAEGKTSDEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHA 239 Query: 229 IRFGYI 234 +R + Sbjct: 240 VRNNLV 245 >gi|78047709|ref|YP_363884.1| two-component response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036139|emb|CAJ23830.1| two-component response regulator [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 214 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ L + + G +V+ + + + + +L+ RE L+ Sbjct: 104 LKSGARGFMLKGMMRKELRDTIRAVHAG--RRVVPAEIAMELAQHAGEDDLSPREMEVLR 161 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIAE L ++ TV A++ KL A +R A+ A++ G + Sbjct: 162 ELARGNANREIAESLSVTEGTVKAHMKRILSKLGAKDRTHAVLLALKRGIL 212 >gi|329947896|ref|ZP_08294828.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523520|gb|EGF50618.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 203 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 45/109 (41%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ + LA + H + + + + LT+RE LQ A Sbjct: 98 AGAAGFIVKDTPPEELAEAIRKV-HAGLRVIDPELAQ--ESVLLGPNPLTDREKEVLQAA 154 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA +L L TV YL SA K A NR +A A G++ Sbjct: 155 ATGADAREIAARLHLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGWL 203 >gi|319781696|ref|YP_004141172.1| LuxR family transcription regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167584|gb|ADV11122.1| regulatory protein LuxR [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 236 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 5/144 (3%) Query: 95 ETVIESSGQLSVRLEGGLLPFAG----IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAH 150 + + L E LL G + + +G + + + + ++ A Sbjct: 94 ASRAPEADGLVTGEEARLLDVLGHAEIYSLRLNVGRQRLFALFSAATAGSIDQPALMRAQ 153 Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 C ++ +L ++ L++RE CL +G T++E+A LG+S +TVN+Y+ Sbjct: 154 LKCCYALSHIPQLIAA-AAMQDPLSDRERECLFWVSEGKTTDEVAVILGVSSNTVNSYIT 212 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 A K A NR AIA AIR G I Sbjct: 213 HAIQKFAASNRAMAIATAIRSGII 236 >gi|290959189|ref|YP_003490371.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260648715|emb|CBG71828.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 200 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I H V + SS LT RE L+ Sbjct: 93 LAAGVRGFVPKTVSAQRLA-EIIRTVHAGNRYVDPELAA--DAISSGDSPLTAREAEVLE 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG EIAE+ LS TV YL SA KL NR A+ A G++ Sbjct: 150 LAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGVENRHAAVRLARERGWV 200 >gi|298490276|ref|YP_003720453.1| LuxR family two component transcriptional regulator ['Nostoc azollae' 0708] gi|298232194|gb|ADI63330.1| two component transcriptional regulator, LuxR family ['Nostoc azollae' 0708] Length = 240 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ +IAEKL ++V TV ++ + KL A +R QA +A+R G Sbjct: 178 PLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 237 Query: 233 YI 234 + Sbjct: 238 LV 239 >gi|68535964|ref|YP_250669.1| two-component system response regulator TcsR2 [Corynebacterium jeikeium K411] gi|68263563|emb|CAI37051.1| two-component system response regulator TcsR2 [Corynebacterium jeikeium K411] Length = 200 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +G+++ + LA+ + H + + + + L+ERET Q Sbjct: 96 GVDGFIVKDTPPEELADAIRRV-HAGLRVIDPTLAQ--ESLLTPDNPLSERETEVCQQLF 152 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +S IA+ L LS TV ++ S K A NR +A A G+I Sbjct: 153 EGKSSPAIAKALHLSPGTVRNHISSIMTKTGAGNRYEAAHVAKTNGWI 200 >gi|70726115|ref|YP_253029.1| hypothetical protein SH1114 [Staphylococcus haemolyticus JCSC1435] gi|68446839|dbj|BAE04423.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 207 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 2/110 (1%) Query: 127 HKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GY + E L + ++ + +E + L++RE L Sbjct: 98 GADGYEMKDVEPQKLIQTIHDVLNNKRIIHPEAQSVIETVSSKPHNTNKLSKREIEVLAE 157 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T++EIA L +S T+ ++ KL +R QA AI + Sbjct: 158 MVKGKTNKEIANTLFVSEKTIKTHVSHIFNKLSVTDRTQAAIYAIENKLV 207 >gi|315502130|ref|YP_004081017.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315408749|gb|ADU06866.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 220 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTERE 178 G+++ + L + V A G +V+ LT RE Sbjct: 100 AGAAGFLLKDTPPDALRDAVRTVAGGDALLSPAVTRRVLAAAARSPVADPGRLAGLTARE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G G ++ EI + L LS T Y+ KL+A +R Q + A G + Sbjct: 160 RDVLAQVGAGRSNAEIGQALFLSPDTARTYVSRLLQKLNARDRAQLVVIAYESGLV 215 >gi|302867924|ref|YP_003836561.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315505671|ref|YP_004084558.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302570783|gb|ADL46985.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315412290|gb|ADU10407.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 222 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173 L +G+++ L V + G L ++ + Sbjct: 95 LAAGASGFLLKDVTPEHLVAAVRMVQDGDALLAPAITRRLVRRFARRDPQTATVHRDLAT 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L+L G ++ E+AE L LS TV ++ KL +R+QA+ A G Sbjct: 155 LTRRETEVLRLLAGGLSNAELAEALHLSEATVKTHVARILAKLRLRDRVQAVVVAYETGL 214 Query: 234 IC 235 + Sbjct: 215 VS 216 >gi|270261276|ref|ZP_06189549.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] gi|270044760|gb|EFA17851.1| transcriptional regulatory protein [Serratia odorifera 4Rx13] Length = 238 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 68/220 (30%), Gaps = 12/220 (5%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L S+ + L ++ +A F Y+ +P + + NY + + Sbjct: 8 LMDALLDSVHDRELFLRRLEPCAQALGFEYYSYIVFSCYPASRPKMLIEGNYPAEYLEDY 67 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 L D + + L W G + ++ Sbjct: 68 RKLRVYLQDPVIDQAHHSTLQFHWDE-----EFYQDRPELWWRMAQFGIREGWSQSIKDC 122 Query: 126 FHKNGYVIFT-------SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 + + G + F S NE + + LT RE Sbjct: 123 YGRLGILTFAGKKIPEQSPEAGARNETFFLWLAQIAHKTLREALISVNDEAIKDVLTLRE 182 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 L+ +G TSEEIA +GLS TVN ++G++ KL Sbjct: 183 KDILRWCSEGKTSEEIAMLMGLSERTVNFHIGNSIKKLSV 222 >gi|54298259|ref|YP_124628.1| hypothetical protein lpp2317 [Legionella pneumophila str. Paris] gi|53752044|emb|CAH13470.1| hypothetical protein lpp2317 [Legionella pneumophila str. Paris] Length = 267 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 2/116 (1%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERET 179 VR F + + F + + + + A + + + K LT RE Sbjct: 152 VRDNFEQFICLFFDAMLPEIVTAIPNQKWLAIFNDSEFRKNVIMRKAVKKPLAQLTPREL 211 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 CL L G T ++I+E L LS TVN + S K+ VN +A++KA R G + Sbjct: 212 QCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFRLGLLS 267 >gi|229820223|ref|YP_002881749.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566136|gb|ACQ79987.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 224 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L +G+++ + +L + + G VI +F + + Sbjct: 104 LRAGASGFLLKNTPPPVLLDGIRTVVDGGALLSPTVTRTVIAEFTSRSPRPLDPHPHIDQ 163 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE + L G ++EEI ++L +S T ++ A +KL A +R Q + A + G Sbjct: 164 LTNREHEVVSLVAQGLSNEEIGKRLYVSPATARTHVSHAMLKLSARDRAQLVVFAFQSGL 223 >gi|297625366|ref|YP_003687129.1| LuxR family transcriptional regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921131|emb|CBL55678.1| two-component response regulator LuxR [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 236 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA------ 170 L +G+++ + L + A G A +++ F+ S Sbjct: 109 LQAGASGFLLKDAGPTELLAAIRAVASGDSVVAPSATRRLLERFVPTLPIAQSGGDTKKR 168 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE L L G G + EIAE L L TV ++G KL +R+ + A Sbjct: 169 LEALTDREREVLTLVGQGLNNTEIAETLFLGSATVKTHIGHILAKLQLRDRVHMVVFAYD 228 Query: 231 FGYI 234 G + Sbjct: 229 AGLV 232 >gi|295394806|ref|ZP_06805021.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972402|gb|EFG48262.1| DNA-binding response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 202 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V+ + LA + G Q + L + + S LTERE L Sbjct: 95 LAAGAKGFVVKDAPAEELAEAIRKVHRGE--QAVDPSLAI-ESISLGPSPLTEREREVLA 151 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A G + IA+ L LS TV +L SA KL NR A +A + G++ Sbjct: 152 VAHTGASVRTIADSLFLSEGTVRNHLSSAISKLGVDNRSTAAIEAAKRGWL 202 >gi|291295044|ref|YP_003506442.1| two component LuxR family transcriptional regulator [Meiothermus ruber DSM 1279] gi|290470003|gb|ADD27422.1| two component transcriptional regulator, LuxR family [Meiothermus ruber DSM 1279] Length = 194 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 10/110 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + Y LA + G ++ R+ LT RE LQ Sbjct: 94 AGADAYWSKELPPEALAERLRRLGLGLEPRL----------RAPELPRLTAREQEVLQWM 143 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G +++EIA ++ +S TV +L KL+A NR++A+ +A G + Sbjct: 144 AQGLSTKEIARQMHISPETVKDHLLRLYEKLEARNRVEALERARSLGLLS 193 >gi|221635975|ref|YP_002523851.1| two-component response regulator [Thermomicrobium roseum DSM 5159] gi|221157551|gb|ACM06669.1| two-component response regulator [Thermomicrobium roseum DSM 5159] Length = 213 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSS-AARNLTERETSC 181 GYV+ L + + A G +V + +E + R + L+ + S Sbjct: 100 AGAQGYVLKDIVHFDLKKTLKMIARGEAVLDPRVASVVVERLRNRKAITDIPLSPHQLSV 159 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ EIA++L LS +TV Y+ +L A NR++A+ A G++ Sbjct: 160 LRLIAQGLSNREIADRLFLSENTVKGYVQEVLRRLGARNRLEAVMIANERGWL 212 >gi|254449548|ref|ZP_05062985.1| two component transcriptional regulator, LuxR family [Octadecabacter antarcticus 238] gi|198263954|gb|EDY88224.1| two component transcriptional regulator, LuxR family [Octadecabacter antarcticus 238] Length = 204 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCL 182 L G++ + L N + A G Y I + K ++ A LTERE L Sbjct: 93 LKAGAAGFIPKSLPAKSLINAIKFMAMGEQYAPIDFMTAIEKTPANPLADKLTERELQVL 152 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + +G ++++IA L + TV ++ + K+ A NR QA A G Sbjct: 153 KGLTEGKSNKQIARDLEIQEPTVKLHMKTLYRKVGAANRTQAAMIAREAGL 203 >gi|159027236|emb|CAO89331.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 234 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 42/80 (52%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 VI ++ ++ LTERE L L G+++ +IA++L +++ TV ++ + K Sbjct: 155 VIIQGVDPEHRQLLENVPLTERELEILALIVGGFSNAQIADRLYITIGTVKTHVRNILNK 214 Query: 216 LDAVNRIQAIAKAIRFGYIC 235 L +R QA A+R G + Sbjct: 215 LSVDDRTQAAVLALRSGLVA 234 >gi|154685055|ref|YP_001420216.1| YdfI [Bacillus amyloliquefaciens FZB42] gi|154350906|gb|ABS72985.1| YdfI [Bacillus amyloliquefaciens FZB42] Length = 211 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 4/112 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-NLTERETSCL 182 NGY++ + L + + G ++ F E+ +R++A LT++E L Sbjct: 96 GANGYLLKDTSSETLFHTMDAAVRGEVLLQPDILRRFREMKMERANANETQLTDKEIIVL 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G+ S+ IA LG+S TV A L S KL A +R +A+ A++ G + Sbjct: 156 EAVAQGHKSKAIAFDLGISERTVKARLTSIYNKLGADSRTEAVTIAMQKGIL 207 >gi|115372616|ref|ZP_01459923.1| two-component system regulatory protein [Stigmatella aurantiaca DW4/3-1] gi|310823849|ref|YP_003956207.1| two-component system, regulatory protein [Stigmatella aurantiaca DW4/3-1] gi|115370337|gb|EAU69265.1| two-component system regulatory protein [Stigmatella aurantiaca DW4/3-1] gi|309396921|gb|ADO74380.1| Two-component system, regulatory protein [Stigmatella aurantiaca DW4/3-1] Length = 213 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 9/118 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA--ARNL 174 L G+++ LA+ + A+G +V F E+ ++ A L Sbjct: 94 LRAGVKGFLLKDVTRDQLADAIRRVANGETLLPPGVAERVQRGFTEVPQEFPHAELPEGL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T RE ++L G ++ EIA LG + TV + KL +R +A+ +A+ G Sbjct: 154 TRRELEVMRLIARGLSNREIATVLGTAEGTVKNQTSNILAKLGVRDRTRAVLRAMELG 211 >gi|10954765|ref|NP_066700.1| hypothetical protein pRi1724_p120 [Agrobacterium rhizogenes] gi|10567429|dbj|BAB16238.1| riorf119 [Agrobacterium rhizogenes] Length = 224 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 38/186 (20%), Positives = 58/186 (31%), Gaps = 11/186 (5%) Query: 60 DSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112 P + Y D + + W + S + Sbjct: 39 TFNSYPEEWQDIYLGSHYSRIDPVITEAKRRMETFSWTADDWPARGSSELRRFRDQAIEH 98 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRS 168 +G+ PV F + F S N +++ A V+ L Sbjct: 99 GIRSGLTIPVEGSFGSTMMLTFASSEKKAENGKVLDGQKATRAVLAIHYRLKIIAATTIV 158 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + R L+ RE CL A G ++ E A G++ TV YL A KLDA +A A Sbjct: 159 APKRLLSPREAMCLMWAAKGKSAPETAMLTGINARTVQHYLDKAREKLDAATVPHLVAIA 218 Query: 229 IRFGYI 234 G + Sbjct: 219 KDHGLV 224 >gi|150391892|ref|YP_001321941.1| two component LuxR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149951754|gb|ABR50282.1| two component transcriptional regulator, LuxR family [Alkaliphilus metalliredigens QYMF] Length = 208 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 6/109 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC------YQVITDFLELFKKRSSAARNLTER 177 L GY++ + + + + G V+T L+ K++ LTER Sbjct: 93 LKNGAQGYILKSQSADSIIESLRTVSKGNVVFETEIASVLTSMLKEEKEKHHLDLQLTER 152 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 E ++ G+G ++ EI+ L LS TV Y+ KL+ +R Q Sbjct: 153 EHEIIKWVGEGLSNREISAALYLSEGTVRNYVTQLLEKLNVRDRTQLAI 201 >gi|271963970|ref|YP_003338166.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270507145|gb|ACZ85423.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 218 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L G+++ T + V A G Y +VI + R SAAR Sbjct: 94 LADGAAGFLLKTGDPREFLLAVRAAAEGGAYLSPRVAARVIGELAGDRLARGSAARERID 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G G ++ EIA +L L +V Y+ + +L NR+QA A G Sbjct: 154 VLTRREREVLGLVGAGLSNAEIARRLHLVEGSVKTYVSTILGRLGVRNRVQAAVLAHEAG 213 Query: 233 Y 233 Sbjct: 214 L 214 >gi|256396070|ref|YP_003117634.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362296|gb|ACU75793.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 225 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 50/127 (39%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNL-- 174 L +G+++ + + + + + A G ++I DF L Sbjct: 95 LRAGASGFLLKSMALDAILDAIRVVAAGDALIAPSVTRRLIADFTATPTTPKPHPEPLEH 154 Query: 175 -------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T+RE L L G G ++ EIAE+L +S T ++ KL+A +R+ Sbjct: 155 PHQIAQITDREREVLALVGQGLSNAEIAERLIISAATAKTHVARLFAKLEARDRVHLAII 214 Query: 228 AIRFGYI 234 A G + Sbjct: 215 AFESGLV 221 >gi|254445671|ref|ZP_05059147.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198259979|gb|EDY84287.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 213 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 6/110 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA------CYQVITDFLELFKKRSSAARNLTER 177 L GY++ S + + G + + + + SS +L+ R Sbjct: 98 LRAGACGYLLKRSTPEQVTTAIRDAKRGGMPMSVEVARRVISYFRQEAQVSSDVDSLSNR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 E L+ G+T++EIA KL ++ TV+ +L + KL R +A K Sbjct: 158 EREVLEFVAQGFTNKEIAAKLSVTPETVHWHLKNCYKKLHVRTRTEAAMK 207 >gi|148359909|ref|YP_001251116.1| transcriptional regulator [Legionella pneumophila str. Corby] gi|148281682|gb|ABQ55770.1| transcription regulator protein, response regulator containing CheY-like receiver domain and HTH DNA-binding domain [Legionella pneumophila str. Corby] Length = 267 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 2/116 (1%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERET 179 VR F + + F + + + + A + + + K LT RE Sbjct: 152 VRDNFEQFICLFFDAMLPEIVTAIPNQKWLAIFNDSEFRKNVIMRKAVKKPLTQLTPREL 211 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 CL L G T ++I+E L LS TVN + S K+ VN +A++KA R G + Sbjct: 212 QCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFRLGLLS 267 >gi|117928181|ref|YP_872732.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648644|gb|ABK52746.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 216 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-IEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 L + +V + + + + + ++ + + LT RE L Sbjct: 99 LEAGASAFVAKDAPAEDVVSAARHALVSPRSFSAADLAGAMRRRMNPSGPQLTPREREVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 QL DG IA +L +S T ++ KL A NR QA+ AIR G + Sbjct: 159 QLMADGLGVSAIARQLFISESTTKTHVSKLYEKLGAANRAQALMAAIRLGLL 210 >gi|326331931|ref|ZP_08198217.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325950244|gb|EGD42298.1| two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 219 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN-LTER 177 GY++ ++ L + V A G V+ +F + LT+R Sbjct: 100 AGATGYLVKSASREELLDAVERVAAGDPVFTPGLAGLVLGEFQHSAATEVRGDKPTLTDR 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ET L+L G + +IA++L LS TV ++ + KL NR++ AI G Sbjct: 160 ETEILKLVAKGLSYRQIADRLVLSHRTVQNHVQNTLRKLQMHNRVELTRYAIEQGL 215 >gi|324992362|gb|EGC24283.1| DNA-binding response regulator [Streptococcus sanguinis SK405] Length = 199 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + ++ L+++E LQ A Sbjct: 95 ADVDAYVLKERSIADLMKTIQTVLDGQKEY----SPELMEVLMTSRNPLSQQERLVLQAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIAEKL LS TV Y+ + KL+A NR +A+ G++ Sbjct: 151 ATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENRTEAVRIGQEQGWL 199 >gi|308272248|emb|CBX28854.1| hypothetical protein N47_B20000 [uncultured Desulfobacterium sp.] Length = 225 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR----NL 174 GYV+ S L + I A G +V+ +E K++ A L Sbjct: 99 AGALGYVVKESAVDGLIKGLDIIAKGEYFLDSSLSCEVVNRLMETPTKKTKAKDLAYGAL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L +G + I EKL +S TV + + KLD + + + A + G I Sbjct: 159 TPREQEVLRLLAEGMAPKAIGEKLFISPKTVENHRANIMSKLDLHSILDLVRYAAKVGLI 218 >gi|282801760|gb|ADB02863.1| AzicR5 [Kibdelosporangium sp. MJ126-NF4] Length = 214 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L G+V+ S ++L V HG +++ + + A LT Sbjct: 96 LHAGACGFVLKRSGPVLLVEAVRAAFHGDTLISPSVTTRLLRHLTGRDDEPDALAEPLTA 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L DG T+ EI +L +S T ++ + KL NR+ A G Sbjct: 156 REREVAGLVADGLTNAEIGTRLFISAGTAKTHVANVQRKLGVRNRVGIAIWAQARGL 212 >gi|241203092|ref|YP_002974188.1| LuxR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856982|gb|ACS54649.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 248 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 83/226 (36%), Gaps = 18/226 (7%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDS-GDIPNILI 69 +S L L + + + A Y + ++ D DI N L+ Sbjct: 39 VASTGRLQSGLRALTDYVGAS---YYLLARCDLLQESGLDFIVSSDWPFDLVRDIANDLV 95 Query: 70 ETYGDDF-LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 Y L P ++ S ++ +G + + F +G + Sbjct: 96 RGYARSTELEKCMQVFQP-------NFALLPDSAEVP---DGASRQYCSVTF--NVGRSR 143 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 + E +L+ E + + G + FL + LT+RE CL +G Sbjct: 144 LALMFLFGEGFILSPERLRDV-GLLAGYVASFLRCGGTKVDRDFELTDRELECLFWIAEG 202 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 TS+EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 203 KTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 248 >gi|148998533|ref|ZP_01825974.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|168576597|ref|ZP_02722463.1| response regulator [Streptococcus pneumoniae MLV-016] gi|307068610|ref|YP_003877576.1| CheY-like receiver/HTH DNA-binding domain-containing response regulator [Streptococcus pneumoniae AP200] gi|147755726|gb|EDK62772.1| DNA-binding response regulator [Streptococcus pneumoniae SP11-BS70] gi|183577636|gb|EDT98164.1| response regulator [Streptococcus pneumoniae MLV-016] gi|306410147|gb|ADM85574.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Streptococcus pneumoniae AP200] Length = 199 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEVVMTRPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS T+ Y+ + KLDA NR +A A G++ Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|291459358|ref|ZP_06598748.1| putative nitrate/nitrite response regulator protein NarL [Oribacterium sp. oral taxon 078 str. F0262] gi|291417957|gb|EFE91676.1| putative nitrate/nitrite response regulator protein NarL [Oribacterium sp. oral taxon 078 str. F0262] Length = 220 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 47/111 (42%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 + Y++ + + + G + + LTERE +L Sbjct: 93 ALGVDAYLLKDAFIDEIVFCLKSVERGGKFYSAALVDPRLSEEEKKLGTLTEREREVYEL 152 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 GYT+ EI+ +L ++ T ++ + KL + NR++A+ ++ + GY+ Sbjct: 153 MCQGYTNLEISARLFITEGTAKRHVSNILSKLGSKNRVEAVIQSGQKGYLT 203 >gi|94314242|ref|YP_587451.1| transcriptional regulator two component heavy metal regulatory response ZniR [Cupriavidus metallidurans CH34] gi|93358094|gb|ABF12182.1| transcriptional regulator two component heavy metal regulatory response ZniR [Cupriavidus metallidurans CH34] Length = 206 Score = 95.4 bits (236), Expect = 5e-18, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 9/108 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + YV +F +L + + A ++R+ L+ERE L + Sbjct: 106 GADDYVAKPVDFDILESIIEARLSRAVKP---------QQRTPQNVTLSEREIEALSWSA 156 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EIA LGLS TV+ ++ A KL R++A+ +A G+I Sbjct: 157 RGKTSGEIATILGLSKRTVDFHIDRAREKLGVATRVEAVVRAATEGFI 204 >gi|283786004|ref|YP_003365869.1| nitrate/nitrite response regulator protein [Citrobacter rodentium ICC168] gi|282949458|emb|CBG89071.1| nitrate/nitrite response regulator protein [Citrobacter rodentium ICC168] Length = 215 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 51/105 (48%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A+G + + ++L ELF ++ LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSERVNEYLRERELFGEQDDPFSILTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|258650793|ref|YP_003199949.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554018|gb|ACV76960.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 215 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 10/123 (8%) Query: 122 VRLG--FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA----- 171 V G+++ + +L + A G V L F + ++ Sbjct: 93 VHGALKAGARGFLLKDAGPALLTQAIHAAADGDALIAPSVTVRLLAAFAQAPTSPPRQPL 152 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G T+ EIA +L ++ TV A++ S KL A NR++ A Sbjct: 153 EPLTAREEEVLVTVAQGRTNSEIASQLFITSSTVKAHVASLMRKLGARNRVEVAMWAHET 212 Query: 232 GYI 234 G I Sbjct: 213 GRI 215 >gi|78062461|ref|YP_372369.1| two component LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77970346|gb|ABB11725.1| two component transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 215 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 10/112 (8%) Query: 131 YVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +++ + L + HG ++I L K S LT RE L+ Sbjct: 104 FLLKSMRGERLLQAIHAAVHGEPTLHPGIAQRMIG---ALRKPPLSPFAALTARELEVLR 160 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G ++ IA LG++ TV +LG+ KL +R QA+A A R G + Sbjct: 161 CLAEGGSNARIAATLGITEKTVKTHLGNVMSKLHLSDRTQAVALAWREGLMA 212 >gi|84496167|ref|ZP_00995021.1| putative two-component system regulator [Janibacter sp. HTCC2649] gi|84382935|gb|EAP98816.1| putative two-component system regulator [Janibacter sp. HTCC2649] Length = 232 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC--------------YQVITDFLELFKKRSSAA 171 GY++ ++ + V+ A G ++ D E +A Sbjct: 99 AGATGYLVKSASSEDIVAAVLATARGEAVFTSGLAGLVLGEFRRMAADDGEAVAAPQTAD 158 Query: 172 RN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT+RET L+L G + +EIA +L LS TV ++ + KL NR++ + A Sbjct: 159 RPIPELTDRETEVLRLVATGMSYKEIAAELFLSHRTVQNHVQNTLGKLHLHNRVELVRFA 218 Query: 229 IRFGY 233 + G Sbjct: 219 LARGL 223 >gi|300865100|ref|ZP_07109925.1| two-component response regulator [Oscillatoria sp. PCC 6506] gi|300336871|emb|CBN55075.1| two-component response regulator [Oscillatoria sp. PCC 6506] Length = 210 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR----NLTE 176 L + Y I + L + A GA Y Q+ +E K + + L++ Sbjct: 93 LSSGADAYCIKGASVERLLAAIAAAAEGATYLDPQIARTVIENLKPPTPVSTASIGQLSQ 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE+ L+L +GY++ EIA L LS +T+ ++ KL +R+QA A+R G + Sbjct: 153 RESEVLKLMVEGYSNPEIAAALYLSPNTIKTHVRGIMNKLAVDDRVQAAVVALRAGLV 210 >gi|292487894|ref|YP_003530769.1| transcriptional activator protein expR [Erwinia amylovora CFBP1430] gi|292899116|ref|YP_003538485.1| LuxR family transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291198964|emb|CBJ46075.1| LuxR-family transcriptional regulator [Erwinia amylovora ATCC 49946] gi|291553316|emb|CBA20361.1| Transcriptional activator protein ExpR [Erwinia amylovora CFBP1430] Length = 240 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 81/230 (35%), Gaps = 34/230 (14%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY-------GD 74 LI+ +++A Y++ P + + P ++ Y D Sbjct: 28 RLIEQQLRALELDFYSLFIRHPVPFTR-------PKTFLYSNYPQDWLDHYWREGFYQLD 80 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L +S +W ++T+ S+G F G++ V G + Sbjct: 81 PVLEMCSSPGKIWLW---DDKTI--SAGLCVFEHARNYGIFHGLSCSVMASNRSVGILSM 135 Query: 135 TSE----------FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 ++ L + ++E A I D ++ + +ERE L+ Sbjct: 136 STANSQKLIKLTTETELKIQYVLELSMAALININDI-----SMATTKLDFSERELEILKW 190 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EI+ L +S +TVN + + +A N+ Q + A G I Sbjct: 191 TAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240 >gi|332991886|gb|AEF01941.1| two-component system regulatory protein [Alteromonas sp. SN2] Length = 214 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDF--LELFKKRSSAARNLTER 177 GY++ L + + +G +V+ LE+ + L+ + Sbjct: 98 GAKGYLLKDVSLETLIDAIKSVVNGETLIQPSVTEKVLKGLQGLEVSFESFEQPETLSPK 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L GY+++EI+E + S TV + + K+ +R +A+ KA+ G++ Sbjct: 158 EIEILRLVAAGYSNKEISEAMFKSTGTVKNQVSAIMAKMGVRDRTRAVLKALELGWL 214 >gi|333025578|ref|ZP_08453642.1| putative two-component system response regulator TcsR2 [Streptomyces sp. Tu6071] gi|332745430|gb|EGJ75871.1| putative two-component system response regulator TcsR2 [Streptomyces sp. Tu6071] Length = 198 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I H V + ++ L+ RE L+ Sbjct: 91 LEVGVRGFVPKTVSAQRLA-EIIRTVHAGSRYVDPELAA--DAIAAGDSPLSAREAEVLE 147 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG EIA++ GLS TV YL SA KL A NR A+ A G++ Sbjct: 148 YAADGAPVAEIAQRAGLSPGTVRNYLSSAVTKLGAENRHAAVRTARSRGWV 198 >gi|311894021|dbj|BAJ26429.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 224 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 14/124 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L +G+++ + L V A G +++ + R + Sbjct: 94 LRAGASGFLLKDAHPEELLAGVRAVAGGDAVVAPAITRRLLDAYAHHLPARPPGPVDDDP 153 Query: 174 ----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L G+T+ EIA +L LS TV ++G K+ A +R+QA+ A Sbjct: 154 RLAALTGREREILLAVARGWTNGEIAARLVLSESTVKTHVGRVLAKIGARDRVQAVILAY 213 Query: 230 RFGY 233 G Sbjct: 214 DLGL 217 >gi|330470066|ref|YP_004407809.1| regulatory protein LuxR [Verrucosispora maris AB-18-032] gi|328813037|gb|AEB47209.1| regulatory protein LuxR [Verrucosispora maris AB-18-032] Length = 228 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA------RNLTE 176 GYV T LA + A G ++ L+ F R A LT Sbjct: 111 AGARGYVTKTISPDELAAAIRRVADGDAVFSPRLAGFVLDAFAARPDAPVADPELDQLTN 170 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L GY +EIA +L +S+ TV ++ + KL NR + A + Sbjct: 171 REREVLRLLARGYAYKEIARELYISIKTVETHVSNVLRKLQMSNRYELSRWAADRRLV 228 >gi|297201229|ref|ZP_06918626.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197712908|gb|EDY56942.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 221 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 56/125 (44%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL------ELFKKRSSA 170 L +G+++ + LA V + A G ++IT+F L +A Sbjct: 95 LRAGASGFLLKDASARQLAEGVRVVASGEALLAPSVTRRLITEFSKLSESPRLMAAAHTA 154 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT+RET L L G +++E+AE+L ++ T+ ++ VKL +R QA A Sbjct: 155 YGDLTDRETEVLILIAQGLSNQEMAERLLVAESTIKTHVSRILVKLGLRDRTQAAVFAYE 214 Query: 231 FGYIC 235 + Sbjct: 215 ARLVT 219 >gi|324997340|ref|ZP_08118452.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 232 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 8/117 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--------AARNLTE 176 +G++ ++ + + A G L R + LT Sbjct: 112 AAGASGWLSKDADAEAIGRALRSAADGVSTVDAAVLARLVASRPAGAPVAEREPPDGLTP 171 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L +G ++ EIA +L + TV ++ K +R QA+ A R G Sbjct: 172 REVEVLALIAEGLSNTEIARRLVVGEATVKTHVNHLFAKAGLRDRAQAVGYAYRHGL 228 >gi|229822282|ref|YP_002883808.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229568195|gb|ACQ82046.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 216 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 11/117 (9%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLE--------LFKKRSSAARNLTER 177 GY++ L + V A G + L L + + LT R Sbjct: 99 RGYLLKDVTLDSLVDAVRTLAGGGTLVQPAITERVLRAVRAGSVPLDDAAAGDVQELTSR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L GY++ EIAE L L+ TV ++ + +KL +R +A+ +A+ G + Sbjct: 159 ELEILRLLAAGYSNREIAEALHLAEGTVKNHVSTVLLKLGTRDRTRAVLRALHHGLL 215 >gi|182415045|ref|YP_001820111.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842259|gb|ACB76511.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 209 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+V+ L + + G Y + +R A L+ RE L+L Sbjct: 101 AGAAGFVVKEMALDRLLEAIRVVNSGGQY-IPEQVAARIAERLLA--GLSPREMEVLKLL 157 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA +LGL V T+ Y+ + KL +R QA+ A++ G I Sbjct: 158 AKGLSNKEIATQLGLVVGTIKIYVANIFNKLGVSDRTQALVTAVKRGII 206 >gi|271968610|ref|YP_003342806.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270511785|gb|ACZ90063.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 216 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSA-ARNLT 175 L G+++ S +L + + + +++ + LT Sbjct: 97 LRAGATGFLLKDSGPTLLIEAIRAAAAGDALVSPSVTVRLLEHLAHPRSGGARPLTEPLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ERE ++L G T++E+A +L +S+ TV +LGS KL A NR++ A A G + Sbjct: 157 ERELDVVRLVARGRTNQEVAAELFVSLSTVKTHLGSIQAKLGARNRVEIAAWAWESGVVS 216 >gi|119485367|ref|ZP_01619695.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119457123|gb|EAW38249.1| Two Component Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 250 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 37/63 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EI+EKL ++V TV ++ S KL +R QA +A+R G Sbjct: 188 PLTERELEVLELIVGGCSNAEISEKLYVTVGTVKTHVRSILNKLCVEDRTQAAVRALRSG 247 Query: 233 YIC 235 + Sbjct: 248 LVS 250 >gi|114765847|ref|ZP_01444940.1| DNA-binding response regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114541846|gb|EAU44883.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 204 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCL 182 L G++ T L N V A G Y + + + A L+ RE L Sbjct: 93 LEAGAAGFLPKTLSAKSLVNAVRFMAMGEQYAPLDFMRAEEETEVNPLAEKLSPRELEVL 152 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + G +++EIA L + TV ++ S K++A NR A A G Sbjct: 153 EGLTQGKSNKEIARDLDIREPTVKLHVKSLYRKINASNRTHAAMIAKEAGL 203 >gi|311894385|dbj|BAJ26793.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR-------- 172 L +G+++ + L + A G ++ LE + AA Sbjct: 96 LAAGASGFLLKNTRPEQLLAAIRDVAAGDAVLSPRITRRLLEDVRPHLPAAPDHRDHRDL 155 Query: 173 -----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ RE L G G ++ EIA L L+ TV ++LG KL +R+QA+ Sbjct: 156 PDPSARLSAREHEVLVQVGRGLSNAEIAAALHLAEATVKSHLGRILPKLGLRDRVQAVVL 215 Query: 228 AIRFGYI 234 A R G + Sbjct: 216 AHRAGLV 222 >gi|209515006|ref|ZP_03263875.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] gi|209504632|gb|EEA04619.1| two component transcriptional regulator, LuxR family [Burkholderia sp. H160] Length = 222 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 8/105 (7%) Query: 138 FLMLANEVIIEAHGAC---YQVITDFLE-----LFKKRSSAARNLTERETSCLQLAGDGY 189 + + A G C ++ L K LT RE L + DG Sbjct: 116 PAEIVASIEAVAAGLCVLTPDILARLLAGTRQPRQKASGEPFEALTSREIEVLAMLADGL 175 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++EIA L +S +TV +L + KL A NR +A+ +R G+I Sbjct: 176 GNKEIARHLDISDNTVKFHLSAIFGKLGATNRTEAVMLGMRHGFI 220 >gi|42525668|ref|NP_970766.1| DNA-binding response regulator [Treponema denticola ATCC 35405] gi|41815679|gb|AAS10647.1| DNA-binding response regulator [Treponema denticola ATCC 35405] gi|325475224|gb|EGC78409.1| DNA-binding response regulator [Treponema denticola F0402] Length = 201 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQ 183 F GY++ + ++ + A + ++I+ + RS +L +RET L+ Sbjct: 94 FGCKGYILKQNIDSLVPALNAVGAGSIVFDSEIISKIPQTKPARSQFKEDLNDRETDILE 153 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L DG ++EIA +L LS TV Y+ S KL+ +R Q + Sbjct: 154 LVADGLNNKEIANRLSLSEGTVRNYVSSILEKLNLRDRTQLVVY 197 >gi|326330563|ref|ZP_08196870.1| two-component system, regulatory protein [Nocardioidaceae bacterium Broad-1] gi|325951638|gb|EGD43671.1| two-component system, regulatory protein [Nocardioidaceae bacterium Broad-1] Length = 219 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G+++ ++ + V A G +V+ + + + + A Sbjct: 96 LEAGASGFLLKDADPDAIVAAVRSVAAGHGTLDTSLTRRVLREVVTRRRTQPVTAARGSE 155 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L +G ++EEIA+ L L V TV ++L KL +R+QA A + G Sbjct: 156 LLTTRELDILLHLAEGMSNEEIAQALVLEVSTVKSHLARMMPKLGVKSRLQAAVWAYQSG 215 Query: 233 YI 234 I Sbjct: 216 LI 217 >gi|72161807|ref|YP_289464.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71915539|gb|AAZ55441.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 214 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 48/122 (39%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L G+++ E L V A G ++I +F + A Sbjct: 92 LRAGAAGFLLKDVEAADLLKAVHTVARGEGMIAPAVTRRLINEFAATRPREQEKADPAIL 151 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G+G ++++IA +L ++ T ++ KLD +R+QA A Sbjct: 152 ERLTPREREVLACIGEGLSNQQIARRLYITETTAKTHVSRILTKLDLRSRVQAAIVAREV 211 Query: 232 GY 233 G Sbjct: 212 GL 213 >gi|326330233|ref|ZP_08196544.1| response regulator, two-component system [Nocardioidaceae bacterium Broad-1] gi|325952046|gb|EGD44075.1| response regulator, two-component system [Nocardioidaceae bacterium Broad-1] Length = 218 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR-----NLT 175 L G+++ + +L + A G V L F ++ A LT Sbjct: 97 LRAGARGFLLKDAGPELLVQAIHAAADGDALIAPNVTRRLLATFADQAPAVPVQPVDPLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 ERE L L G T+ EI+ +L +S+ TV ++ S KL NR++ A Sbjct: 157 EREEQVLALVARGRTNAEISTELFVSLSTVKTHVASLMTKLGTRNRVEIAMWAY 210 >gi|293405659|ref|ZP_06649651.1| transcriptional regulator NarP [Escherichia coli FVEC1412] gi|298381341|ref|ZP_06990940.1| two-component system [Escherichia coli FVEC1302] gi|300819110|ref|ZP_07099312.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 107-1] gi|300822646|ref|ZP_07102784.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 119-7] gi|300897746|ref|ZP_07116140.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 198-1] gi|300902154|ref|ZP_07120155.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 84-1] gi|300926301|ref|ZP_07142103.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 182-1] gi|300930429|ref|ZP_07145837.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 187-1] gi|300935141|ref|ZP_07150171.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 21-1] gi|300950044|ref|ZP_07163991.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 116-1] gi|300956848|ref|ZP_07169109.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 175-1] gi|301022495|ref|ZP_07186371.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 69-1] gi|301307196|ref|ZP_07213220.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 124-1] gi|301647050|ref|ZP_07246881.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 146-1] gi|309793076|ref|ZP_07687504.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 145-7] gi|331642822|ref|ZP_08343957.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H736] gi|331673712|ref|ZP_08374475.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA280] gi|331678147|ref|ZP_08378822.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H591] gi|332278650|ref|ZP_08391063.1| transcriptional regulator NarP [Shigella sp. D9] gi|291427867|gb|EFF00894.1| transcriptional regulator NarP [Escherichia coli FVEC1412] gi|298278783|gb|EFI20297.1| two-component system [Escherichia coli FVEC1302] gi|300316358|gb|EFJ66142.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 175-1] gi|300358520|gb|EFJ74390.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 198-1] gi|300397493|gb|EFJ81031.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 69-1] gi|300405747|gb|EFJ89285.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 84-1] gi|300417670|gb|EFK00981.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 182-1] gi|300450534|gb|EFK14154.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 116-1] gi|300459636|gb|EFK23129.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 21-1] gi|300461682|gb|EFK25175.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 187-1] gi|300524846|gb|EFK45915.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 119-7] gi|300528263|gb|EFK49325.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 107-1] gi|300837606|gb|EFK65366.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 124-1] gi|301074782|gb|EFK89588.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 146-1] gi|308123362|gb|EFO60624.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 145-7] gi|315252918|gb|EFU32886.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 85-1] gi|324020961|gb|EGB90180.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 117-3] gi|331039620|gb|EGI11840.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H736] gi|331068985|gb|EGI40377.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA280] gi|331074607|gb|EGI45927.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H591] gi|332101002|gb|EGJ04348.1| transcriptional regulator NarP [Shigella sp. D9] Length = 225 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTEREL 169 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 170 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|196229129|ref|ZP_03127994.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196226361|gb|EDY20866.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 213 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 9/113 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN------L 174 L GY++ + + + G + + F+K+ L Sbjct: 95 LKAGACGYLLKETPPHEIVAAIEEAKAGGSPMTPLIARRVVSFFQKQPVPPPAAQSGEGL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 T+RE L L GY +EI E +G+S HTVN++ KL +R QA+AK Sbjct: 155 TDREREVLDLLAQGYLYKEIGEIMGISTHTVNSHNRHIYEKLQVRSRGQAVAK 207 >gi|55821328|ref|YP_139770.1| response regulator [Streptococcus thermophilus LMG 18311] gi|55823240|ref|YP_141681.1| response regulator [Streptococcus thermophilus CNRZ1066] gi|55737313|gb|AAV60955.1| response regulator (homolog to RR11 Spn) [Streptococcus thermophilus LMG 18311] gi|55739225|gb|AAV62866.1| response regulator (homolog to RR11 Spn) [Streptococcus thermophilus CNRZ1066] Length = 200 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + YV+ L + G EL + + L++RE L Sbjct: 93 LAAQVDAYVLKERSISDLMATIHTVLAGQKEY----SPELVEGVAFDNNPLSQREQEVLA 148 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T++EIAE L LS TV Y+ + KLDA NR A+ A ++ Sbjct: 149 MVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLDAGNRTDAVRIAKEKDWL 199 >gi|77460927|ref|YP_350434.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens Pf0-1] gi|77384930|gb|ABA76443.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 911 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 3/108 (2%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLE---LFKKRSSAARNLTERETSCLQLAGD 187 ++ + + A C Q++ F + + S L+ RE + L+L Sbjct: 804 ILLKEHSEWLRGQLQLNAATAFCQQLLEHFPQASVRSQAESVTTEQLSSRELAVLRLIAQ 863 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G +++EI+++L +S+HTV + KL R QA+A+A G + Sbjct: 864 GCSNQEISDQLFISLHTVKTHASHINSKLGVERRTQAVARAKELGVLS 911 >gi|294630195|ref|ZP_06708755.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292833528|gb|EFF91877.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 207 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I H V + S+ LT RE L+ Sbjct: 100 LAAGVRGFVPKTVSAQRLA-EIIRTVHAGNRYVDPELAA--DAISAGDSPLTAREAEVLE 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG EIAE+ LS TV YL SA KL A NR A+ A G++ Sbjct: 157 LAADGAPVTEIAERAALSAGTVRNYLSSAVTKLGAENRHAAVRLARERGWV 207 >gi|218886123|ref|YP_002435444.1| LuxR family transcriptional regulator [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757077|gb|ACL07976.1| two component transcriptional regulator, LuxR family [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 216 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 8/119 (6%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNL- 174 L +GYV+ +L + G Y +I DFL ++ S + +L Sbjct: 94 TLSAGADGYVLKNVSSDILVQAMETVLSGRRYISPEISELLIEDFLRHGRRESGSLLDLL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++RE L+L +G+ ++ IA+KL +S TV + + KL A + + ++ AI G Sbjct: 154 SDREKQVLKLVAEGHGNKMIADKLCISHKTVEKHKANLKRKLGADSTAELVSFAIEHGL 212 >gi|149914006|ref|ZP_01902538.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] gi|149812290|gb|EDM72121.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] Length = 214 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKR-----SSAARNLTER 177 GY++ ++ + +++ G + L + K LTER Sbjct: 98 AGAKGYLLKGADLGQIGTDILSVLDGGSPISPGIARHLLAVVKDGGTGSVEPGLSPLTER 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E LQ GY EIA+ LG+S TV ++ S KL+ ++A+A+A + G++ Sbjct: 158 EAEILQAVARGYKRHEIAQHLGISAGTVGNHITSIYRKLEVSTNMEAVARASKKGFL 214 >gi|313836389|gb|EFS74103.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314928854|gb|EFS92685.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314971268|gb|EFT15366.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328906399|gb|EGG26174.1| putative two-component response regulator [Propionibacterium sp. P08] Length = 224 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA------ 170 L +G+++ + L + G A ++I F+ + + A Sbjct: 97 LRAGASGFMLKDAGPTELLAAIRAVRDGDSVVAPSATRRLIERFIPRQCEGAPAMTDLKL 156 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A Sbjct: 157 VETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYD 216 Query: 231 FGYI 234 G + Sbjct: 217 AGLV 220 >gi|307944862|ref|ZP_07660200.1| ATP-dependent transcription regulator LuxR [Roseibium sp. TrichSKD4] gi|307772076|gb|EFO31299.1| ATP-dependent transcription regulator LuxR [Roseibium sp. TrichSKD4] Length = 240 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 73/186 (39%), Gaps = 17/186 (9%) Query: 65 PNILIETYG-------DDFLFHFNSGLLPIIWQS--IQEETVIESSGQLSVRLEGGLLPF 115 P IE Y D F + + + S + ++ + + Sbjct: 56 PTQWIEHYEASGYASCDPFFKYCCNTYGSLRTGSAYLSRYKYLQPKERQLILDASEAGLT 115 Query: 116 AGIA--FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-----S 168 AG + F G+ I + ++V+ + + + +FL L K Sbjct: 116 AGFSSVFRTNGTNGCGGWNILSDAGSEHVDQVLQDREAE-FHFLANFLHLRMKDVALHAH 174 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S+A LT RE CL+ G + E+A+KL +S TV ++ +A KL A R QA+A+A Sbjct: 175 SSAPVLTRRELECLKWLSAGLRTAELADKLAISGPTVEFHIKNAREKLSAKTREQAVARA 234 Query: 229 IRFGYI 234 + + Sbjct: 235 VSLKLL 240 >gi|311740276|ref|ZP_07714107.1| LuxR family DNA-binding response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|311304659|gb|EFQ80731.1| LuxR family DNA-binding response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 205 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 42/109 (38%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ S L V+ A L ++ +L+ RE L+ Sbjct: 97 AGAMGYLLKDSPEQALHEAVLNTAAHRRTLAPEVVDLLAQRVGRPQESLSTRELEILRAL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A++L +S TV +L KL R A+ A I Sbjct: 157 STGSSNKELAKQLFISEATVKTHLIHIFQKLGVETRTAAVTVARERKLI 205 >gi|126727388|ref|ZP_01743223.1| DNA-binding response regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] gi|126703383|gb|EBA02481.1| DNA-binding response regulator, LuxR family protein [Rhodobacterales bacterium HTCC2150] Length = 204 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCL 182 L +G+V + L N V G Y I L ++ LT+RE L Sbjct: 93 LEAGASGFVPKSLPAKSLVNAVKFMVLGEQYAPIDFMTALDEEAKHPLVEKLTKRECEVL 152 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + G +++EIA L + TV ++ + K+ A NR QA A G Sbjct: 153 KGLTKGKSNKEIARDLNIQEPTVKLHMKTLYRKIGAANRTQAALMAYEAGI 203 >gi|145595794|ref|YP_001160091.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305131|gb|ABP55713.1| response regulator receiver [Salinispora tropica CNB-440] Length = 221 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCL 182 L + +V T+ + A D E K+R + + L+ RE L Sbjct: 102 LEAGASAFVPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVL 161 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L DG + IA++L +S T ++ KL A NR QA+ A+R G + Sbjct: 162 RLLADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 213 >gi|301328679|ref|ZP_07221739.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 78-1] gi|300844929|gb|EFK72689.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 78-1] Length = 216 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTEREL 169 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 170 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|238064361|ref|ZP_04609070.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237886172|gb|EEP75000.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 229 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L +G++ E L + + I A G +I +L K + A Sbjct: 97 LRSGASGFLGKGVEPADLLDAIRIVAGGEALLSPKATQALIARYLASLKPATGAVPTELA 156 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L G ++ IAE+L +S T ++ KL A +R Q + A + G Sbjct: 157 ALTEREREVLTLVAAGLSNNAIAERLYVSPLTAKTHVNRIMAKLGARDRAQLVVVAYQTG 216 Query: 233 Y 233 + Sbjct: 217 F 217 >gi|256391148|ref|YP_003112712.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256357374|gb|ACU70871.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFL----ELFKKRSSAAR 172 L G++ + L + I A G A +I FL + S+ Sbjct: 99 LRAGAGGFLGKGVDPEELLRAIRIVAGGNSLLSPAATRALIARFLAQPSDTAPTVSAPLD 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G ++EEIA +L ++ T ++ A KL A +R Q + A G Sbjct: 159 ALTARELEVVTLVATGLSNEEIAGQLFVTPLTAKTHVNRAMTKLGARDRAQVVVIAYESG 218 Query: 233 YI 234 + Sbjct: 219 LV 220 >gi|325689072|gb|EGD31080.1| DNA-binding response regulator [Streptococcus sanguinis SK115] Length = 199 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + ++ L+++E LQ A Sbjct: 95 ADVDAYVLKERSIADLMKTIHTVLDGQKEY----SPELMEVLMTSRNPLSQQERLVLQAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIAEKL LS TV Y+ + KLDA NR +A+ G++ Sbjct: 151 ATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENRTEAVRIGQEKGWL 199 >gi|292558970|gb|ADE31971.1| Response regulator [Streptococcus suis GZ1] Length = 190 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 4/110 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + LT E+ L+L Sbjct: 85 ADVDAYVLKERSIADLMRTIETVLAGRKEY----SPELMDILLTQRSPLTNLESQLLKLV 140 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G +++EIA +L LS TV Y+ S KL A NR A+ A G++ Sbjct: 141 AEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENRTAAVKVAQEKGWLV 190 >gi|312114265|ref|YP_004011861.1| LuxR family transcriptional regulator [Rhodomicrobium vannielii ATCC 17100] gi|311219394|gb|ADP70762.1| two component transcriptional regulator, LuxR family [Rhodomicrobium vannielii ATCC 17100] Length = 219 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 7/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERET 179 GYV+ S L + A G Y + L+ + ++A +L+ERE Sbjct: 102 GAAGYVLKRSVTDDLLRAIHAVASGGMYLDPSIAAHAVDRTLDSPSENATAGADLSEREV 161 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+ A G++++ IA L +SV +V Y A KL NR+ + AI G++ Sbjct: 162 EVLRFASVGHSNKAIANILTISVRSVETYKARAMDKLGLDNRVGLVGYAIEKGWLA 217 >gi|291301282|ref|YP_003512560.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570502|gb|ADD43467.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 206 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 41/109 (37%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + LT RE L+ Sbjct: 96 AGARGYLLKAGPPEELFTAIRAAARGEPVLSPAVADSMMRHLRQPRTTLTSREVEILRAL 155 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ IA++L ++ TV +L KLD +R A+A A+ I Sbjct: 156 ARGDSNRAIAKRLFITEATVKTHLVHIYAKLDVDSRTAAVAAALERRLI 204 >gi|114765164|ref|ZP_01444308.1| DNA-binding response regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114542439|gb|EAU45466.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 204 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCL 182 L G+V T L N V A G Y I + A++LT+RE L Sbjct: 93 LELGAAGFVPKTLPAKSLVNAVRFMAMGEQYAPIAFMTAAEEVEEHPLAKSLTKREMEVL 152 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + +G +++EIA L ++ T+ ++ + KLD NR QA A G Sbjct: 153 KGLTEGKSNKEIARDLEITEPTIKLHVKTLYRKLDVNNRTQAAIVARDAGI 203 >gi|94497063|ref|ZP_01303636.1| transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] gi|94423435|gb|EAT08463.1| transcriptional regulator, LuxR family protein [Sphingomonas sp. SKA58] Length = 248 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 82/239 (34%), Gaps = 26/239 (10%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + ++++ + L+ KA F Y + +D + + + D P +E Sbjct: 15 AGAIKDATALSDLMAEITKAMGFRHYALVHHVDLKPAVRSVHIV--------DYPQDWVE 66 Query: 71 TY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + D + + W ++Q + ++ + + G P Sbjct: 67 RFQARRLYASDPIHRASHRTNVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTVPAH 126 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-------LELFKKRSSAARNLTE 176 + NG F M A E++ Q++ F + S +LTE Sbjct: 127 IPGELNGSCSFA----MAAGEMLDHRQLPFVQLVGSFAFEAARKISRIHAPQSECPSLTE 182 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 R+ C+ L G T EI++ LG+ TV ++ A + R +A+ G I Sbjct: 183 RQAECVALVARGKTDWEISQILGIGQETVIQHVKDARDRYGVTKRTLLAIRALFEGQIS 241 >gi|322436726|ref|YP_004218938.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] gi|321164453|gb|ADW70158.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX9] Length = 209 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 2/108 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + YV+ + L + G V +F +R LT+RE L+L Sbjct: 102 GASAYVLKSLPMQELVVTIRSVYSG-TKHVPHEFAARMAERF-GDEKLTDRELDVLKLIR 159 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +++IA L ++ TVN ++ + + KL A +R A+ A+R G + Sbjct: 160 DGRRNKQIASDLKIAEATVNFHIKNISQKLQANDRTHAVMIALRRGLL 207 >gi|312200374|ref|YP_004020435.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311231710|gb|ADP84565.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 219 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 46/120 (38%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRS-------SAARN 173 L +G+++ + L V A G V ++ ++ A + Sbjct: 94 LRAGASGFLLKRTRPEDLIAAVHTVAAGDALLSPSVTRRVIDRLTRQPVPDLAGTRALAD 153 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L G ++ EIA L + TV + KL +RIQA+ A G Sbjct: 154 LTPREREVLELMAQGLSNREIARHLVVEESTVRTHAKRVLAKLGLRDRIQAVIFAYENGI 213 >gi|297563772|ref|YP_003682746.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848220|gb|ADH70240.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 234 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L +G+++ + L + V A G +VI + SA+R L Sbjct: 111 LRLGASGFLLKDAGPRQLRDAVRTVAAGDALLSPGVTRRVIERLADTAVAPGSASRLDVL 170 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G G +++EI L LS T ++G KL +R+ + A G + Sbjct: 171 TGRERDVLALVGRGMSNQEIGAALHLSPATARTHVGRLLAKLGVRDRVGLVVVAYETGLV 230 >gi|119513102|ref|ZP_01632155.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] gi|119462236|gb|EAW43220.1| Two Component Transcriptional Regulator, LuxR family protein [Nodularia spumigena CCY9414] Length = 240 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G ++ +IAEKL ++V TV ++ + KL A +R QA +A+R G Sbjct: 178 PLTQRELEILELIVAGCSNGQIAEKLYITVGTVKTHVRNILNKLCADDRTQAAVRALRSG 237 Query: 233 YI 234 + Sbjct: 238 LV 239 >gi|264677605|ref|YP_003277511.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] gi|262208117|gb|ACY32215.1| two component transcriptional regulator, LuxR [Comamonas testosteroni CNB-2] Length = 195 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 50/120 (41%), Gaps = 12/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDF-----LELFKKRSSAARNL 174 GY++ S F + V+ A+G +++ LE + L Sbjct: 76 GVVGYLLKNSWFGSYSQAVLEVANGGASISPIVAKKILPKIFKYSALEEAPFENKKLEKL 135 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L+L G + EI + + +S TV+ ++ + K+ R QA+ A+ G I Sbjct: 136 TDREKEVLRLIAQGKRTHEIGDYMEISALTVSTHVKNIYRKMQVRTRAQAVRYAVLKGII 195 >gi|256787147|ref|ZP_05525578.1| two component system response regulator [Streptomyces lividans TK24] gi|289771044|ref|ZP_06530422.1| two-component system response regulator [Streptomyces lividans TK24] gi|289701243|gb|EFD68672.1| two-component system response regulator [Streptomyces lividans TK24] Length = 222 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARN--- 173 L G+++ S+ L + V A G +++T+ RS + Sbjct: 94 LDQGVAGFLLKASDPRDLISGVRAVASGGSCLSPLVARRLMTELRRAPSPRSEVSGERTT 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L + G G ++ EIA++L L T+ Y+ + +L+ NR+QA A G Sbjct: 154 LLTKREQEVLGMLGAGLSNAEIAQRLHLVEGTIKTYVSAIFTQLEVRNRVQAAIIAYEAG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|34496978|ref|NP_901193.1| nitrate/nitrite response regulator protein [Chromobacterium violaceum ATCC 12472] gi|34102834|gb|AAQ59198.1| nitrate/nitrite response regulator protein [Chromobacterium violaceum ATCC 12472] Length = 212 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFK-----KRSSAARNLTERE 178 G+++ LA+ V A G + L+ + + LT RE Sbjct: 97 GARGFLLKDISLERLADAVRRAAAGETLFRPGLTERVLDGVRGCGDFPKLDLPERLTGRE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G+ + EIA+ LG S T+ ++ S KL +R++A+ + + GYI Sbjct: 157 VEVLALMAGGFNNREIADALGPSEGTIKNHVSSILSKLGVRDRVRAVLRGLELGYI 212 >gi|328887358|emb|CCA60597.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 226 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 54/123 (43%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L +G+++ + V + A G ++I +F + + + R Sbjct: 102 LHAGASGFLVKDMALDDILAAVRVVAAGDALIAPGVTRRLIKEFTDRPRTAPAVPRRRAE 161 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T+RE L L G G ++ E+A +L +SV T Y+ KL+A +R+Q + A G Sbjct: 162 GITDREREVLTLVGRGLSNTEVAAELHISVATAKTYVTRLLAKLNARDRVQLVIIAYEAG 221 Query: 233 YIC 235 + Sbjct: 222 LVS 224 >gi|307329198|ref|ZP_07608364.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306885228|gb|EFN16248.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 190 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + +++ + LA+ + G + + D A LT RE L + Sbjct: 86 GADAFLVKDAPAAQLADAIRRVLRG---ERVIDPTLAAAALVDGASPLTAREREVLHASA 142 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ E+A L LS TV YL +A K A NR +A+ A G++ Sbjct: 143 DGSTNAELARALHLSPGTVRNYLSTAIQKTAARNRAEAVRIAREKGWL 190 >gi|238060903|ref|ZP_04605612.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237882714|gb|EEP71542.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 223 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 23/131 (17%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK------------ 166 GY++ ++ + V A G V+ +F L Sbjct: 91 AGATGYLVKSAAPAEFLDAVRRTAAGEPVFTPGLAGLVLGEFRRLAAGADESAGGRGPVA 150 Query: 167 ----RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 R + A LT+RET L+L G + ++IAE+LGLS TV ++ + KL NR+ Sbjct: 151 ATAGRDTDAPRLTDRETEVLRLVAKGMSYKQIAERLGLSHRTVQNHVQNTLGKLQLHNRV 210 Query: 223 QAIAKAIRFGY 233 + AI G Sbjct: 211 ELTRYAIERGL 221 >gi|148990003|ref|ZP_01821278.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|182684936|ref|YP_001836683.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|225855491|ref|YP_002737003.1| response regulator [Streptococcus pneumoniae JJA] gi|303254075|ref|ZP_07340190.1| DNA-binding response regulator [Streptococcus pneumoniae BS455] gi|303260376|ref|ZP_07346346.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|303262524|ref|ZP_07348466.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|303265155|ref|ZP_07351068.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] gi|303265983|ref|ZP_07351878.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|303268085|ref|ZP_07353886.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|147924663|gb|EDK75749.1| DNA-binding response regulator [Streptococcus pneumoniae SP6-BS73] gi|182630270|gb|ACB91218.1| DNA-binding response regulator [Streptococcus pneumoniae CGSP14] gi|225723110|gb|ACO18963.1| response regulator [Streptococcus pneumoniae JJA] gi|301802678|emb|CBW35444.1| response regulator protein [Streptococcus pneumoniae INV200] gi|302598908|gb|EFL65939.1| DNA-binding response regulator [Streptococcus pneumoniae BS455] gi|302636424|gb|EFL66917.1| DNA-binding response regulator [Streptococcus pneumoniae SP14-BS292] gi|302638542|gb|EFL69007.1| DNA-binding response regulator [Streptococcus pneumoniae SP-BS293] gi|302642445|gb|EFL72791.1| DNA-binding response regulator [Streptococcus pneumoniae BS458] gi|302644424|gb|EFL74676.1| DNA-binding response regulator [Streptococcus pneumoniae BS457] gi|302645372|gb|EFL75606.1| DNA-binding response regulator [Streptococcus pneumoniae BS397] Length = 199 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEVVMTRPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS T+ Y+ + KLDA NR +A A G++ Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|228991572|ref|ZP_04151516.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] gi|228768141|gb|EEM16760.1| Two-component response regulator [Bacillus pseudomycoides DSM 12442] Length = 201 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + Y++ L + + +G LF K LT RE L+ Sbjct: 94 MDAKVEAYLLKDEPIEFLIDAIHKVMNGERVVSTDLAATLFLKED---NPLTAREMEILR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A +G T+ EI + L L+ TV YL S+ KL+A +R QAI A G+I Sbjct: 151 MAKNGMTTREIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIADEKGWI 201 >gi|152965963|ref|YP_001361747.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151360480|gb|ABS03483.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 95.4 bits (236), Expect = 6e-18, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 16/128 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA--------- 171 L +G+++ + L V A G ++ LELF R + Sbjct: 94 LRAGASGFLLKDVAPVDLIGAVRTVAGGEAVVSPRITRRMLELFAHRLPESGEVPRSDAV 153 Query: 172 ----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +LT RE L+ ++ EIA L LS TV ++ KL +R+ A+ Sbjct: 154 HPRLADLTPRELEVLRHIAGARSNAEIAAHLFLSEATVKTHVARVLAKLGVRDRVHAVVL 213 Query: 228 AIRFGYIC 235 A G C Sbjct: 214 AYETGLAC 221 >gi|319793774|ref|YP_004155414.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315596237|gb|ADU37303.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 264 Score = 95.0 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 12/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN-----L 174 +G+++ + F A V+ +G +++ +S L Sbjct: 145 GASGFLVKNAWFQSYAQAVLQVVNGGAAITPRLARRLLVHLDHQRSNQSPVRPPETKAAL 204 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE L+L GY +EEIA +L +S TVNA++ + KL A R QA++ A G + Sbjct: 205 SAREREVLRLVATGYVTEEIALQLTISAQTVNAHVKNIYRKLHAHTRAQAVSFASHRGLL 264 >gi|284042145|ref|YP_003392485.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946366|gb|ADB49110.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 215 Score = 95.0 bits (235), Expect = 6e-18, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 8/114 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSS-----AARNLT 175 L G+++ + +L + A+G V L F ++ LT Sbjct: 97 LRAGARGFLLKDAGPELLVQAIHAAANGDALIAPNVTRRLLATFADQAPVVPVQPIDPLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +RE L L G T+ EIA +L + + TV ++ S KL A NR++ A Sbjct: 157 KREEEVLALVARGRTNAEIATELFVGLSTVKTHVASLMTKLGARNRVEIAIWAY 210 >gi|325697545|gb|EGD39431.1| DNA-binding response regulator [Streptococcus sanguinis SK160] gi|328944949|gb|EGG39107.1| DNA-binding response regulator [Streptococcus sanguinis SK1087] Length = 199 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + ++ L+++E LQ A Sbjct: 95 ADVDAYVLKERSIADLMKTIHTVLDGQKEY----SPELMEVLMTSRNPLSQQERLVLQAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIAEKL LS TV Y+ + KLDA NR +A+ G++ Sbjct: 151 ATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENRTEAVRIGQEKGWL 199 >gi|238060304|ref|ZP_04605013.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|330469356|ref|YP_004407099.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|237882115|gb|EEP70943.1| two-component system response regulator receiver [Micromonospora sp. ATCC 39149] gi|328812327|gb|AEB46499.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 222 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCL 182 L + +V T+ + A D E K+R + + L+ RE L Sbjct: 103 LEAGASAFVPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVL 162 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L DG + IA++L +S T ++ KL A NR QA+ A+R G + Sbjct: 163 RLLADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 214 >gi|170767404|ref|ZP_02901857.1| nitrate/nitrite response regulator NarP [Escherichia albertii TW07627] gi|170123738|gb|EDS92669.1| nitrate/nitrite response regulator NarP [Escherichia albertii TW07627] Length = 215 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + ++ +L E+F LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVSQYLHEREMFGAEEDPFSVLTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|329938503|ref|ZP_08287928.1| two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329302476|gb|EGG46367.1| two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L G+++ + + + + A G ++ L+ R + A Sbjct: 106 LRAGAGGFLLKNAPAAEVVGAIRVVAAGESVVAPRITRLLLDQVADRLAPANGQSERLNV 165 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G ++ E+A +L ++ TV +LG+ KL +R QA+A A G Sbjct: 166 LTARERDVLSQVARGLSNAEVAAELYVAEATVKTHLGNLMAKLHLRDRAQAVAFAYESGL 225 Query: 234 I 234 + Sbjct: 226 V 226 >gi|284008488|emb|CBA74985.1| two-component system, NarL family, nitrate/nitrite response regulator [Arsenophonus nasoniae] Length = 206 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 NGY++ E ML N + A+G I +L + +LT+RE L Sbjct: 97 DAGANGYLLKNCELDMLVNSLKSAANGLPVFSNQIHQYLNNRHQYQDPLSSLTKREFEVL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + +G + EI++ L +S TV ++ + KL+ +R++A Sbjct: 157 REIANGLKNREISKYLFISEETVKVHIRNLLKKLNVRSRLEA 198 >gi|290962712|ref|YP_003493894.1| two component response regulator [Streptomyces scabiei 87.22] gi|260652238|emb|CBG75371.1| putative two component response regulator [Streptomyces scabiei 87.22] Length = 216 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 9/120 (7%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAA------R 172 + L G+++ + +L V A G V L L ++R+SAA Sbjct: 91 IALRNGACGFLLKDAAPALLIEAVRSAARGDALVSPGVTVRLLRLLEERTSAAAGGVPGS 150 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ RE +L G T++EI+++L LS+ TV +LG KL NR++ A A G Sbjct: 151 ALSARELEVARLVAVGRTNQEISDELCLSLSTVKTHLGHIHHKLGVRNRVEVAAWAWANG 210 >gi|152981487|ref|YP_001352450.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] gi|151281564|gb|ABR89974.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 213 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----KRSSAARNLTERET 179 L +G++ +++ L + G Y T L+ +S LT R+ Sbjct: 95 LASGAHGFIHKSADSKTLFAALSSVMQGRGYLPPTFKLDTHDGGSNDDASLLSRLTPRQM 154 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L DG + EIA++LG++ TV A++ + L +NR QA A R G + Sbjct: 155 EVLRLMCDGLRNGEIADQLGMTEKTVKAHVSAVLSGLGVLNRTQATVVARRAGLL 209 >gi|88800203|ref|ZP_01115771.1| probable two component response regulator transcription regulator protein [Reinekea sp. MED297] gi|88777049|gb|EAR08256.1| probable two component response regulator transcription regulator protein [Reinekea sp. MED297] Length = 217 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTER 177 L GY++ + + +G +++ LTER Sbjct: 99 LQAGAKGYLLKHDPEQNILEAINTMLNGGAPISPIIARLMLQKFHRNTPTPKTPETLTER 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L G++S+EIAEKL LS HTV ++ + KL +R +A+ +A + G + Sbjct: 159 QVKILTYVSQGFSSKEIAEKLSLSYHTVTTHIKNIYAKLQVNSRTEALHEAAKLGIL 215 >gi|94984291|ref|YP_603655.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94554572|gb|ABF44486.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 200 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + LA + + H + L + LTERE L+ Sbjct: 94 LEVGARGYLLKDAPASDLAGAIR-QVHAGGRAIDP---GLAAEAWGERDPLTERERQVLR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G ++ IA +L LS TV YL A KL NRI+A KA G++ Sbjct: 150 AAEGGASTAVIAARLNLSEGTVRNYLSEAISKLGCENRIEAARKAREQGWL 200 >gi|300791071|ref|YP_003771362.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800585|gb|ADJ50960.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 217 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELF-------KKRSSAARN 173 L +G+++ + +L V G Q+ L+ F ++ + Sbjct: 96 LRNGASGFLLKDAGPALLIEAVRAADRGDALVSPQITVRLLKHFDGSGSAKRQVKPPSEP 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE ++ A G T+ EI +L +S+ TV +L S K+ A NR++ A A R G Sbjct: 156 LTARELDVVKAAARGLTNTEIGAELFMSLSTVKTHLASVQSKIGARNRVETAAWAWRSGV 215 Query: 234 IC 235 + Sbjct: 216 VS 217 >gi|297158227|gb|ADI07939.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 249 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--L 174 L G+++ ++ L V A G VI +L + +++A L Sbjct: 93 LRAGAAGFLLKDTDPEQLVGAVRTLAQGGSVLDPGVTRAVIGGYLAAEAEATASAAVEAL 152 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G+G + +IAE++GL+ TV ++ + KL VNR+QA A R G + Sbjct: 153 TPREREVLALLGEGLANPQIAERMGLAPSTVKDHVRALLAKLGGVNRVQAAIVADRAGLL 212 >gi|146281277|ref|YP_001171430.1| two-component response regulator NarL [Pseudomonas stutzeri A1501] gi|145569482|gb|ABP78588.1| two-component response regulator NarL [Pseudomonas stutzeri A1501] gi|327479436|gb|AEA82746.1| two-component response regulator NarL [Pseudomonas stutzeri DSM 4166] Length = 202 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 8/112 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAAR--NLT 175 L +GY++ + L ++ I A G QV+ + + + K + + +LT Sbjct: 83 LRNGADGYLLKDMDAEELIEQIRIAATGRMALSPELTQVLAEAIRVRPKPTGQVQFSSLT 142 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +RE L+ G +++ IA KLG++ TV ++ + KL +R++A Sbjct: 143 KREKEVLRQIAKGQSNKMIARKLGITEGTVKVHVKNLLHKLGLRSRVEAAVW 194 >gi|327334996|gb|EGE76707.1| DNA-binding response regulator [Propionibacterium acnes HL097PA1] Length = 179 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G+++ + LA V+ + H + + L+ RE L+ Sbjct: 72 MDAGVAGFLVKDTPAEDLAQ-VVRKVHAGGRAIDPALAA--ESLIEGHNPLSGREREILR 128 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A R G++ Sbjct: 129 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 179 >gi|238919142|ref|YP_002932656.1| nitrate/nitrite response regulator protein NarP [Edwardsiella ictaluri 93-146] gi|238868710|gb|ACR68421.1| nitrate/nitrite response regulator protein NarP [Edwardsiella ictaluri 93-146] Length = 215 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 + Y++ SE L ++ A G + ++ +L + + +LTERE L Sbjct: 104 DAGADSYLLKDSEPEALLAQIRQAAEGRSVFSESVSAYLSTRSEIADPLADLTERELDVL 163 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 164 QEVVRGMSNKQIAAQLHISEETVKVHIRNLLRKLNVRSRVAATV 207 >gi|297203494|ref|ZP_06920891.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197714467|gb|EDY58501.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 236 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 18/129 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRS-------- 168 L +G+++ + L + + A G ++I +F + R Sbjct: 101 LRAGASGFLLKDTPPADLLTAIRVIAGGDALLAPAVTRRLIAEFCRRPEARPEGRLDGLA 160 Query: 169 SAARNL---TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 SA R L T+RE L L G ++ EI+ +L LS TV ++G KL+A +R Q + Sbjct: 161 SAPRGLDGVTDREREVLLLIAGGLSNTEISNRLHLSHGTVKTHVGRLLAKLEARDRAQLV 220 Query: 226 AKAIRFGYI 234 A G + Sbjct: 221 IAAYESGLV 229 >gi|297161023|gb|ADI10735.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 201 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 48/109 (44%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +G+++ LA V G + + D S+ LT RE L A Sbjct: 96 AGASGFLVKDGPVEELAVAVRRVLAG---ERVIDPGLAAAALSAGPNPLTPRERDVLTAA 152 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T +IA K+ LS TV YL SA K NR++A+ A + G++ Sbjct: 153 VDGATVADIAAKVHLSPATVRNYLSSAIGKTQTRNRMEAVRAARQNGWL 201 >gi|229009028|ref|ZP_04166367.1| Two-component response regulator [Bacillus mycoides Rock1-4] gi|228752198|gb|EEM01887.1| Two-component response regulator [Bacillus mycoides Rock1-4] Length = 201 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + Y++ L + +G + LF K LT RE L+ Sbjct: 94 MDAKVEAYLLKDEPIEFLIEAIHKVMNGERVVSVDLTATLFLKED---NPLTAREVEILR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +G T+ EI + L L+ TV YL S+ KL+A +R QAI A G+I Sbjct: 151 MVKNGMTTGEIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIADEKGWI 201 >gi|225181500|ref|ZP_03734942.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225167748|gb|EEG76557.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 212 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 6/110 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----KKRSSAARNLTERETS 180 +GY++ E L N + H + E+ ++ NLT +E Sbjct: 99 AGADGYLLKNVESEELINTIQAV-HKGQSVLDPSVTEILFDNIKSQQPKKEHNLTPKEVQ 157 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L + G ++EIAE + +S TV Y+ + KL+ NR +A + +R Sbjct: 158 ILDMISVGKANKEIAEIMKISDKTVRNYVSNILQKLNVSNRTEAASYWMR 207 >gi|163847483|ref|YP_001635527.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222525334|ref|YP_002569805.1| LuxR family ATP-dependent transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668772|gb|ABY35138.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222449213|gb|ACM53479.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Chloroflexus sp. Y-400-fl] Length = 916 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 39/67 (58%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L++RE L+L +G +++EIA L +++ TV +++ + KL +R QA+A+ Sbjct: 849 DALPEPLSQREIEVLRLMAEGRSNQEIAGHLIIAISTVKSHVNNIFSKLGVASRTQAVAR 908 Query: 228 AIRFGYI 234 R G I Sbjct: 909 GRRLGLI 915 >gi|302869001|ref|YP_003837638.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315504528|ref|YP_004083415.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302571860|gb|ADL48062.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315411147|gb|ADU09264.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 222 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCL 182 L + +V T+ + A D E K+R + + L+ RE L Sbjct: 103 LEAGASAFVPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVL 162 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L DG + IA++L +S T ++ KL A NR QA+ A+R G + Sbjct: 163 RLLADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 214 >gi|160873477|ref|YP_001552793.1| two component LuxR family transcriptional regulator [Shewanella baltica OS195] gi|304411702|ref|ZP_07393314.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|307306246|ref|ZP_07585991.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|160858999|gb|ABX47533.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS195] gi|304349890|gb|EFM14296.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS183] gi|306911119|gb|EFN41546.1| two component transcriptional regulator, LuxR family [Shewanella baltica BA175] gi|315265706|gb|ADT92559.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS678] Length = 198 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ + L N + G +VI L + L ++E L+LA Sbjct: 94 AGVGGFLLKDAPSETLVNAIQQVMAGK--RVIDPELAMMAIGD--VDPLNDKERRALRLA 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ +IAE L ++ TV YL A KL+A NRI A A + G++ Sbjct: 150 SEGKSTADIAETLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGWL 198 >gi|290961078|ref|YP_003492260.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260650604|emb|CBG73720.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 228 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFL---------ELFKKR 167 L +G++ +E L N + + A G +I FL + R Sbjct: 97 LRAGASGFLGKGAEPEELLNAIRVAAGGDALLSPTATKGLIARFLAQPDDSADGDRGAAR 156 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S LT RE L G +++EIAE+L +S TV ++ KL A +R Q + Sbjct: 157 SERLATLTGREREVLVQVAGGLSNDEIAERLEVSPLTVKTHVNRGMAKLGARDRAQLVVF 216 Query: 228 AIRFGYI 234 A G + Sbjct: 217 AYESGLV 223 >gi|229494594|ref|ZP_04388357.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] gi|229318956|gb|EEN84814.1| two component transcriptional regulator, LuxR family [Rhodococcus erythropolis SK121] Length = 220 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLE-----LFKKRSSAA 171 L G+++ ++ L++ V+ A G ++I +F + RS + Sbjct: 94 LDSGAAGFLLKDADPEELSSAVLTVAEGGSVLSPRLTSRLIVEFARRKPAPMSTARSGSD 153 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE +QL G + +IA+ L L TV +++ + KL R+Q + A R Sbjct: 154 HGLSAREMDVVQLLSQGLGNNDIADSLSLEQSTVKSHISNICKKLQVRTRVQIVIWAYRN 213 Query: 232 GYIC 235 I Sbjct: 214 NVIA 217 >gi|255035483|ref|YP_003086104.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254948239|gb|ACT92939.1| two component transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 207 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 3/113 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNLTERETS 180 L +GYV+ + + + G Y E LT RE Sbjct: 93 LQSGASGYVLKNAIGDDIVAALQAAMEGQIYLCAETQKALNEAPGTEPKEIPRLTRREKE 152 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G GYT+++IA +L +S HTV ++ + K N + A G Sbjct: 153 ILELIGQGYTTQQIAAELFISTHTVESHRKNLKEKFGVPNTATVVRMAAELGL 205 >gi|153010196|ref|YP_001371410.1| two component LuxR family transcriptional regulator [Ochrobactrum anthropi ATCC 49188] gi|151562084|gb|ABS15581.1| two component transcriptional regulator, LuxR family [Ochrobactrum anthropi ATCC 49188] Length = 216 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 50/109 (45%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + Y+ +F +L + + + +L+ RET L+ Sbjct: 105 AGADDYLTKPIDFDVLILTIRARLNLVARVKAISAHPAAMELEGEFIHLSRRETEVLKEI 164 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GDG+ + EIA KLGLS HTV+ Y+ + KL +R +A +AIR G + Sbjct: 165 GDGHKNGEIARKLGLSEHTVSDYVKAIYQKLSVSSRAEATREAIRRGLV 213 >gi|331653626|ref|ZP_08354627.1| nitrate/nitrite response regulator protein NarP [Escherichia coli M718] gi|331048475|gb|EGI20551.1| nitrate/nitrite response regulator protein NarP [Escherichia coli M718] Length = 225 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLHEREMFGAEEDPFSVLTEREL 169 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 170 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|324006555|gb|EGB75774.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 57-2] Length = 223 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTEREL 169 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 170 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|314915868|gb|EFS79699.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] Length = 206 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G+++ + LA V+ + H + + L+ RE L+ Sbjct: 99 MDAGVAGFLVKDTPAEDLAQ-VVRKVHAGGRAIDPALAA--ESLIEGHNPLSGREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A R G++ Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206 >gi|295839793|ref|ZP_06826726.1| two-component system response regulator [Streptomyces sp. SPB74] gi|295827655|gb|EDY44664.2| two-component system response regulator [Streptomyces sp. SPB74] Length = 206 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 11/110 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF--------KKRSSAAR 172 L +G+++ + L + + A G V L+ + +++ S+ + Sbjct: 97 LRAGASGFLLKDAPAHELVQAIRVVASGEAMLAPSVTRRLLDKYAGHLPSGEEQQPSSLQ 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LTERE L+L G ++ EIA L +S TV ++G KL +R+ Sbjct: 157 TLTEREVEVLKLVARGLSNAEIAADLFVSETTVKTHVGHVLTKLGLRDRV 206 >gi|288556565|ref|YP_003428500.1| two-component response regulator [Bacillus pseudofirmus OF4] gi|288547725|gb|ADC51608.1| two-component response regulator [Bacillus pseudofirmus OF4] Length = 210 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 55/117 (47%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC----YQVITDFLELFKKRSSAA--RNLTER 177 L GY++ ++ + L + G + L KK + AA +T R Sbjct: 94 LRNGARGYMLKDADAVELIRAIRSCLSGGLSIEEHVAAKVMPRLMKKTNDAAVDPAITPR 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + ++L G+G +++EI+E+L LSV T+ ++ + KL +R Q AIR + Sbjct: 154 ELAIMKLVGEGLSNKEISEELSLSVGTIKNHISAILDKLSLRDRTQLAIYAIRHNVV 210 >gi|288921284|ref|ZP_06415567.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288347315|gb|EFC81609.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 217 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKK-RSSAARNLT 175 L +GYV+ + L G + +I D LE R +T Sbjct: 97 LRAGASGYVLKSVADRDLVEACRAAVRGEAFLYPGAVNALIRDHLERAAAGDPGTGRVIT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L +G++S +IA+ L +SV TV + + KL +R++ AIR G I Sbjct: 157 DREEEVLKLVAEGHSSRQIADILFISVKTVERHRSNLLQKLGLRDRLELTRYAIRAGLI 215 >gi|26248576|ref|NP_754616.1| transcriptional regulator NarP [Escherichia coli CFT073] gi|91211483|ref|YP_541469.1| transcriptional regulator NarP [Escherichia coli UTI89] gi|117624388|ref|YP_853301.1| transcriptional regulator NarP [Escherichia coli APEC O1] gi|227887250|ref|ZP_04005055.1| transcriptional regulator NarP [Escherichia coli 83972] gi|237704666|ref|ZP_04535147.1| transcriptional regulator NarP [Escherichia sp. 3_2_53FAA] gi|300981378|ref|ZP_07175493.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 200-1] gi|300982960|ref|ZP_07176392.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 45-1] gi|301048933|ref|ZP_07195926.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 185-1] gi|331647847|ref|ZP_08348939.1| nitrate/nitrite response regulator protein NarP [Escherichia coli M605] gi|26108981|gb|AAN81184.1|AE016763_143 Nitrate/nitrite response regulator protein narP [Escherichia coli CFT073] gi|91073057|gb|ABE07938.1| nitrate/nitrite response regulator protein NarP [Escherichia coli UTI89] gi|115513512|gb|ABJ01587.1| nitrate/nitrite response regulator protein NarP [Escherichia coli APEC O1] gi|222033954|emb|CAP76695.1| Nitrate/nitrite response regulator protein narP [Escherichia coli LF82] gi|226901032|gb|EEH87291.1| transcriptional regulator NarP [Escherichia sp. 3_2_53FAA] gi|227835600|gb|EEJ46066.1| transcriptional regulator NarP [Escherichia coli 83972] gi|300299309|gb|EFJ55694.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 185-1] gi|300307590|gb|EFJ62110.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 200-1] gi|300408653|gb|EFJ92191.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 45-1] gi|315285806|gb|EFU45246.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 110-3] gi|315298006|gb|EFU57275.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 16-3] gi|324013986|gb|EGB83205.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 60-1] gi|331043571|gb|EGI15709.1| nitrate/nitrite response regulator protein NarP [Escherichia coli M605] Length = 225 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTEREL 169 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 170 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|293410555|ref|ZP_06654131.1| transcriptional regulator NarP [Escherichia coli B354] gi|293446543|ref|ZP_06662965.1| two-component system [Escherichia coli B088] gi|291323373|gb|EFE62801.1| two-component system [Escherichia coli B088] gi|291471023|gb|EFF13507.1| transcriptional regulator NarP [Escherichia coli B354] Length = 236 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 121 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTEREL 180 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 181 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 225 >gi|254444034|ref|ZP_05057510.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] gi|198258342|gb|EDY82650.1| response regulator receiver domain protein [Verrucomicrobiae bacterium DG1235] Length = 209 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 4/115 (3%) Query: 122 VRLGF--HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 + L F Y++ S + + EA A +VI ++ + LT +E Sbjct: 93 IHLAFKAGARAYLLKDSSRSEIIQAI--EAVYAGERVIPPAIKQRLLEQRSRPALTAKEL 150 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++EIA LG++ TV +L + +KL +R +A KA+ G + Sbjct: 151 EILELVVQGRRNKEIAADLGITEFTVKGHLKTVFLKLQVSDRTEAAIKAVSEGLV 205 >gi|149024961|ref|ZP_01836341.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|225859757|ref|YP_002741267.1| response regulator [Streptococcus pneumoniae 70585] gi|147929454|gb|EDK80449.1| DNA-binding response regulator [Streptococcus pneumoniae SP23-BS72] gi|225720998|gb|ACO16852.1| response regulator [Streptococcus pneumoniae 70585] gi|301794941|emb|CBW37404.1| response regulator protein [Streptococcus pneumoniae INV104] gi|332200013|gb|EGJ14087.1| response regulator [Streptococcus pneumoniae GA47901] Length = 199 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEVVMTRPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS T+ Y+ + KLDA NR +A A G++ Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|405947|gb|AAA16411.1| narP [Escherichia coli] Length = 225 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTEREL 169 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 170 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|315106440|gb|EFT78416.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] Length = 206 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G+++ + LA V+ + H + + L+ RE L+ Sbjct: 99 MDAGVAGFLVKDTPAEDLAQ-VVRKVHAGGRAIDPALAA--ESLIEGHNPLSGREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A R G++ Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206 >gi|228925153|ref|ZP_04088263.1| Response regulator receiver [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834492|gb|EEM80021.1| Response regulator receiver [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 537 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 10/118 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----------NLTE 176 +GY++ + + LA + + G F ++++ LT+ Sbjct: 419 GADGYLLKSIDSRELAESIRLVYRGGTMINHGLFHRMWEENEEKGSFESRSDGKEYGLTK 478 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G + IA L LS TV Y + KL NR +A+ KA G + Sbjct: 479 RELEILELLSQGSRYKTIASTLYLSNGTVRNYASNLYEKLGVKNREEAVQKAKDKGLL 536 >gi|226225820|ref|YP_002759926.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226089011|dbj|BAH37456.1| NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 213 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 46/112 (41%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ S L + G Y ++ +LT RE LQ Sbjct: 97 LSAGADGYLLKDSMDDELFFAIESVLRGQRYLAAAIDRARLQESRMRPVSLTAREREVLQ 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L +G T+ +AE L +S HT + + KL+ N+++ + A G I Sbjct: 157 LIANGLTTSAVAEALNISPHTATRHRANLMQKLNVHNQVELVRIAASQGLIV 208 >gi|297197553|ref|ZP_06914950.1| luxR family two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197715575|gb|EDY59609.1| luxR family two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 233 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 10/116 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARN----LT 175 +GYV+ L + V A G A + L + A L+ Sbjct: 107 AGASGYVLKQIRGSDLVSAVRTVASGQSMLDPATTARLMRSLRADPAETPAMAPELASLS 166 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L L GDG T+ EI +KL LS TV ++ KL R+QA A Sbjct: 167 PRERDILALIGDGLTNREIGKKLYLSEKTVKNHISRLLAKLGVQRRVQAAVLASHL 222 >gi|194434215|ref|ZP_03066482.1| nitrate/nitrite response regulator NarP [Shigella dysenteriae 1012] gi|194417544|gb|EDX33646.1| nitrate/nitrite response regulator NarP [Shigella dysenteriae 1012] gi|320178834|gb|EFW53797.1| Nitrate/nitrite response regulator protein [Shigella boydii ATCC 9905] gi|332093180|gb|EGI98240.1| response regulator [Shigella boydii 5216-82] gi|332096195|gb|EGJ01198.1| response regulator [Shigella dysenteriae 155-74] Length = 215 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G A + + +L E+F LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKAFSERVNQYLREREMFGAEEDPFSVLTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|148242532|ref|YP_001227689.1| two component system response regulator [Synechococcus sp. RCC307] gi|147850842|emb|CAK28336.1| Possible two component system response regulator [Synechococcus sp. RCC307] Length = 235 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 35/67 (52%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A L+ RE LQ +GY + EIA++L +S TV ++ + KL +R QA A Sbjct: 167 EALDQLSSREQEVLQALSEGYCNREIAQRLFISQETVKTHVSTVISKLGVRDRTQAAVMA 226 Query: 229 IRFGYIC 235 +R G + Sbjct: 227 LRMGLLS 233 >gi|325695633|gb|EGD37533.1| DNA-binding response regulator [Streptococcus sanguinis SK150] Length = 199 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + ++ L+++E LQ A Sbjct: 95 ADVDAYVLKERSIADLMKTIHTVLDGQKEY----SPELMEVLMTSRNPLSQQERLVLQAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIAEKL LS TV Y+ + KLDA NR +A+ G++ Sbjct: 151 ATGLSNKEIAEKLFLSNGTVRNYMSAILTKLDAENRTEAVRIGQEKGWL 199 >gi|317121636|ref|YP_004101639.1| LuxR family transcriptional regulator [Thermaerobacter marianensis DSM 12885] gi|315591616|gb|ADU50912.1| two component transcriptional regulator, LuxR family [Thermaerobacter marianensis DSM 12885] Length = 222 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLE--------LFKKRSSAARNL 174 GY++ E LA + G +++++ + AR L Sbjct: 96 AGLGGYLLANREAAGLAEAIRACTAGIFVIDAEIMSELAHDSPLYRYVPAPEEVERARLL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++RE L G ++ ++A +L +S TV +L KL +R QA+ A+R G I Sbjct: 156 SQRELEVLSRIARGKSTAQVARELYISPKTVRNHLSHIMQKLGVRDRTQAVLFALRVGLI 215 >gi|70732431|ref|YP_262193.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68346730|gb|AAY94336.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 911 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 46/97 (47%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L V A + + ++ ++ +L+ RE S LQL G +++EI+E+ Sbjct: 814 REQLQQGVSTALTQALLERLPAASREPQEIAAHNESLSSRELSVLQLIAQGCSNQEISER 873 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S+HTV + KL R QA+A+A G + Sbjct: 874 LFISLHTVKTHASHINSKLGVERRTQAVARAQELGLL 910 >gi|332885458|gb|EGK05707.1| hypothetical protein HMPREF9456_02509 [Dysgonomonas mossii DSM 22836] Length = 245 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 1/109 (0%) Query: 128 KNGYVIFTSEFLMLANEVIIEAHGACYQVITD-FLELFKKRSSAARNLTERETSCLQLAG 186 N ++ + L G V + F + SS A +LT RE + LQL Sbjct: 137 GNAWLSLSVLDLSPDQSSFKTVRGHILNVKENTFFPIENLLSSKASDLTTREIAVLQLIK 196 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G S+EI+E+L +SVHTVN + KLD N ++A+ A G I Sbjct: 197 EGLLSKEISEQLFISVHTVNTHRQRILEKLDVNNSMEAVKYASALGLIS 245 >gi|217971562|ref|YP_002356313.1| LuxR family two component transcriptional regulator [Shewanella baltica OS223] gi|217496697|gb|ACK44890.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS223] Length = 198 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ + L N + G +VI L + L ++E L+LA Sbjct: 94 AGVGGFLLKDAPSETLVNAIQQVMAGK--RVIDPELAMMAIGD--VDPLNDKERRALRLA 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ +IAE L ++ TV YL A KL+A NRI A A + G++ Sbjct: 150 SEGKSTADIAETLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGWL 198 >gi|159039051|ref|YP_001538304.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157917886|gb|ABV99313.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 221 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCL 182 L + +V T+ + A D E K+R + + L+ RE L Sbjct: 102 LEAGASAFVPKTAPADEVVAAARHAASSPSAFTAADLAEAMKRRLAPSGPQLSPREGQVL 161 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L DG + IA++L +S T ++ KL A NR QA+ A+R G + Sbjct: 162 RLLADGMSVAGIAKQLFVSESTAKTHISKLYEKLGAANRAQALMTALRLGLL 213 >gi|23098524|ref|NP_691990.1| two-component response regulator [Oceanobacillus iheyensis HTE831] gi|22776750|dbj|BAC13025.1| two-component response regulator [Oceanobacillus iheyensis HTE831] Length = 215 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 9/117 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTE 176 L NG+++ T++ L + + G +V+ L K+ S L+E Sbjct: 98 LKEGANGFLLKTADGKKLIDAIHSCMRGGLVLHDEVAAKVMPKLLHTSKRELS--VQLSE 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L G G T++EIA++L L++ TV Y+ S K + +R Q A+R G Sbjct: 156 RERVITALIGSGLTNKEIADELFLTIGTVKNYITSILQKTEQRDRTQLAIFAVRHGI 212 >gi|282854807|ref|ZP_06264141.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282581953|gb|EFB87336.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314967298|gb|EFT11397.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314981731|gb|EFT25824.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315092496|gb|EFT64472.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] Length = 224 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFL------ELFKKRSSA 170 L +G+++ + L + G A ++I F+ Sbjct: 97 LRAGASGFMLKDAGPTELLAAIRAVRDGDSVVAPSATRRLIERFIPRQGEGAATTTDPKL 156 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A Sbjct: 157 VETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYD 216 Query: 231 FGYI 234 G + Sbjct: 217 AGLV 220 >gi|320162117|ref|YP_004175342.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319995971|dbj|BAJ64742.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 212 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 43/114 (37%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARNLTERETS 180 L GY+ + L + + G Y V + ++ LT RE Sbjct: 96 LQAGARGYLWKDAPDEELIRAIRVAMSGEIYLPPGVSMEHIQALIAAQPPVERLTAREKQ 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G T++ IA +LG+S TV + KLD + A+R G I Sbjct: 156 VLALLASGLTTQAIAVRLGVSPKTVETHRSHVMSKLDLYDIASLTRFALRHGLI 209 >gi|298245303|ref|ZP_06969109.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297552784|gb|EFH86649.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 221 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 2/111 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN--LTERETSCLQ 183 +GY++ L + A GA + ++ A +TERE L Sbjct: 98 AGASGYLLKNVSRAELLKAIRRVATGASLLDPKQRQQALTTATANAPKEAITEREREVLA 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L GYT+++IAE L +S T ++ KL R +A A+ + Sbjct: 158 LVARGYTNKQIAEGLSMSEKTARNHVSHILEKLGLTRRSEAAVYAVEHNLV 208 >gi|261867392|ref|YP_003255314.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412724|gb|ACX82095.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter actinomycetemcomitans D11S-1] Length = 209 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L +++ A G I + L + +LT+RE L Sbjct: 98 DAGADGYLLKDTEPDTLLSQLKRIARGEVILSDSIKNLLLERQSAQEPIYSLTDREMGVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +L G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 158 RLIATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|152966473|ref|YP_001362257.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151360990|gb|ABS03993.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 225 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN-----LT 175 L G+++ + +L V A G + L+ F + A + L+ Sbjct: 97 LRAGACGFLLKDAGPTLLVEAVRAAAAGESLISPAITVRLLQRFAAAAPAPDSRAGEMLS 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE ++L G T+ E+ +L +S+ TV A+L S KL A NR++ A A G + Sbjct: 157 ERELDVVRLVARGGTNAEVGAELFISLGTVKAHLSSVQTKLSARNRVEVAAWAWENGVV 215 >gi|332359210|gb|EGJ37031.1| DNA-binding response regulator [Streptococcus sanguinis SK49] gi|332359828|gb|EGJ37642.1| DNA-binding response regulator [Streptococcus sanguinis SK1056] Length = 199 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + ++ L+++E LQ A Sbjct: 95 ADVDAYVLKERSIADLMKTIHTVLDGQKEY----SPELMEVLMTSRNPLSQQERLVLQAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIAEKL LS TV Y+ + KLDA NR +A+ G++ Sbjct: 151 ATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENRTEAVRIGQEKGWL 199 >gi|330961312|gb|EGH61572.1| LuxR family transcriptional regulator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 240 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 16/183 (8%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 ++ +I + Y D + ++ + L + WQ + + +V L Sbjct: 63 SNVDDIWGKAYRHHELITQDPVIRYYRNHLGFMNWQDAFRLYPLSACYDEAVEASELLPA 122 Query: 115 FA-GIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 + G H G TS + + E ++ + + + Sbjct: 123 ISYGYT------SHCRGTESVTSVCTLAEVEKPINAEQKYLVSSLMPVMHSVARGLKFCS 176 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 R LT RE LQ A DG + EI+ +S TV +L + KL NR QA+ +A+ Sbjct: 177 RGLTHRELETLQWARDGKNAWEISVIRDISEATVKYHLKAIYAKLGVANRAQAVGEALCR 236 Query: 232 GYI 234 G I Sbjct: 237 GLI 239 >gi|297194807|ref|ZP_06912205.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197720731|gb|EDY64639.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 229 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L +G++ +E L N + + A G +I FL + Sbjct: 97 LRAGASGFLGKGAEPDELLNAIRVAAAGEALLSPAATKGLIATFLAQGGAADDDGLHAGD 156 Query: 174 -------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE L L G++++EIA +L +S TV ++ A KL A +R Q + Sbjct: 157 LSERLSALTVREREVLVLVAGGHSNDEIATRLEVSPLTVKTHVNRAMAKLGARDRAQLVV 216 Query: 227 KAIRFGYI 234 A G + Sbjct: 217 TAYESGLV 224 >gi|145597841|ref|YP_001161917.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides F] gi|145209537|gb|ABP38944.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides F] Length = 247 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 64/218 (29%), Gaps = 26/218 (11%) Query: 42 LDFPRRQQLICELHNYD--LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSI 92 D P+ ++ N PN E Y D + P W Sbjct: 26 YDSPKYTYMVINKKNPGDIFIVTSYPNEWAELYTNNNYQNIDPVVLIAFRRFSPFSWDE- 84 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA---------- 142 + E L G F + + + + L Sbjct: 85 NITVISELKLSKIFTLSKKYNIVNGFTFVLHDTMNNLAMLSLIMDDSALNGVESRVLNDR 144 Query: 143 ---NEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAE 196 ++IE H + + + +++ L+ RE L A G T +EIA Sbjct: 145 DRLQMLLIETHEKMLTLSQRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQEIAI 204 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ TV ++G+ KL +N QAI + I Sbjct: 205 ITNITPRTVKYHIGNVVKKLGVINAKQAIGLGVELEII 242 >gi|119471825|ref|ZP_01614158.1| response regulator receiver domain protein (CheY-like) [Alteromonadales bacterium TW-7] gi|119445315|gb|EAW26604.1| response regulator receiver domain protein (CheY-like) [Alteromonadales bacterium TW-7] Length = 201 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ + L N + G Q + D EL A LT++E L+ Sbjct: 95 LSAGVKGFILKEAPSDELINALKKVMQG---QKVID-PELAINALDDADPLTDKERKALK 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG + EIA +L +S T YL A KL+A NRI A A + G++ Sbjct: 151 LASDGLKTSEIATQLFISEGTTRNYLSDAIAKLNATNRIDAARIAKQKGWL 201 >gi|15802746|ref|NP_288773.1| transcriptional regulator NarP [Escherichia coli O157:H7 EDL933] gi|15832336|ref|NP_311109.1| transcriptional regulator NarP [Escherichia coli O157:H7 str. Sakai] gi|168749599|ref|ZP_02774621.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4113] gi|168754943|ref|ZP_02779950.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4401] gi|168764687|ref|ZP_02789694.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4501] gi|168767816|ref|ZP_02792823.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4486] gi|168773087|ref|ZP_02798094.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4196] gi|168780045|ref|ZP_02805052.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4076] gi|168789011|ref|ZP_02814018.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC869] gi|168802408|ref|ZP_02827415.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC508] gi|195935573|ref|ZP_03080955.1| transcriptional regulator NarP [Escherichia coli O157:H7 str. EC4024] gi|208807826|ref|ZP_03250163.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4206] gi|208812712|ref|ZP_03254041.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4045] gi|208820974|ref|ZP_03261294.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4042] gi|209398167|ref|YP_002271605.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4115] gi|217326666|ref|ZP_03442749.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. TW14588] gi|254794092|ref|YP_003078929.1| transcriptional regulator NarP [Escherichia coli O157:H7 str. TW14359] gi|261223349|ref|ZP_05937630.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli O157:H7 str. FRIK2000] gi|261259101|ref|ZP_05951634.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli O157:H7 str. FRIK966] gi|291283444|ref|YP_003500262.1| Nitrate/nitrite response regulator NarP [Escherichia coli O55:H7 str. CB9615] gi|12516525|gb|AAG57328.1|AE005452_1 nitrate/nitrite response regulator (sensor NarQ) [Escherichia coli O157:H7 str. EDL933] gi|13362551|dbj|BAB36505.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. Sakai] gi|187771336|gb|EDU35180.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4196] gi|188016073|gb|EDU54195.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4113] gi|189002090|gb|EDU71076.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4076] gi|189357613|gb|EDU76032.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4401] gi|189362901|gb|EDU81320.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4486] gi|189365348|gb|EDU83764.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4501] gi|189371341|gb|EDU89757.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC869] gi|189375588|gb|EDU94004.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC508] gi|208727627|gb|EDZ77228.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4206] gi|208733989|gb|EDZ82676.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4045] gi|208741097|gb|EDZ88779.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4042] gi|209159567|gb|ACI37000.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. EC4115] gi|209765848|gb|ACI81236.1| nitrate/nitrite response regulator NarP [Escherichia coli] gi|209765850|gb|ACI81237.1| nitrate/nitrite response regulator NarP [Escherichia coli] gi|209765852|gb|ACI81238.1| nitrate/nitrite response regulator NarP [Escherichia coli] gi|209765854|gb|ACI81239.1| nitrate/nitrite response regulator NarP [Escherichia coli] gi|209765856|gb|ACI81240.1| nitrate/nitrite response regulator NarP [Escherichia coli] gi|217319033|gb|EEC27458.1| nitrate/nitrite response regulator NarP [Escherichia coli O157:H7 str. TW14588] gi|254593492|gb|ACT72853.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli O157:H7 str. TW14359] gi|290763317|gb|ADD57278.1| Nitrate/nitrite response regulator NarP [Escherichia coli O55:H7 str. CB9615] gi|320192180|gb|EFW66825.1| Nitrate/nitrite response regulator protein [Escherichia coli O157:H7 str. EC1212] gi|320641261|gb|EFX10739.1| transcriptional regulator NarP [Escherichia coli O157:H7 str. G5101] gi|320646534|gb|EFX15450.1| transcriptional regulator NarP [Escherichia coli O157:H- str. 493-89] gi|320651905|gb|EFX20280.1| transcriptional regulator NarP [Escherichia coli O157:H- str. H 2687] gi|320657630|gb|EFX25428.1| transcriptional regulator NarP [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663086|gb|EFX30399.1| transcriptional regulator NarP [Escherichia coli O55:H7 str. USDA 5905] gi|320667986|gb|EFX34889.1| transcriptional regulator NarP [Escherichia coli O157:H7 str. LSU-61] gi|326339547|gb|EGD63358.1| Nitrate/nitrite response regulator protein [Escherichia coli O157:H7 str. 1125] gi|326344008|gb|EGD67769.1| Nitrate/nitrite response regulator protein [Escherichia coli O157:H7 str. 1044] Length = 215 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLHEREMFGAEEDPFSVLTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|193068201|ref|ZP_03049165.1| nitrate/nitrite response regulator NarP [Escherichia coli E110019] gi|192958480|gb|EDV88919.1| nitrate/nitrite response regulator NarP [Escherichia coli E110019] Length = 215 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|297624881|ref|YP_003706315.1| LuxR family two component transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297166061|gb|ADI15772.1| two component transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 227 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 11/119 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN--------L 174 GY++ + L + + G ++ L+ F + S L Sbjct: 102 AGARGYLLKDAGADDLISAIRRVDEGETLLRAELAASVLDEFSRAKSETPEHPEHRLSEL 161 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE + L+L G +++EIA LG+S TV L KL NR QA A+R G Sbjct: 162 TEREATILRLLAQGASNQEIAVSLGVSEKTVRNRLSEIFSKLRLNNRTQAALYALREGI 220 >gi|297159387|gb|ADI09099.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 38/123 (30%), Positives = 54/123 (43%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 LG G+++ + L V A GA + VIT+ R +AAR Sbjct: 99 LGGGATGFLLKAGDPHELIAGVRAVAGGAAFLSPKVARHVITELGGERLTRGAAARARTD 158 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G G ++ EIA +L L TV Y+ + +L+ NR+QA A G Sbjct: 159 VLTAREREVLALVGAGLSNAEIARRLHLVEGTVKGYVSAVLDRLEVGNRVQAAIVAYEAG 218 Query: 233 YIC 235 + Sbjct: 219 LVA 221 >gi|75910055|ref|YP_324351.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75703780|gb|ABA23456.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 227 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 12/121 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------------SSAARN 173 GY + L + A GA + T E+ + + Sbjct: 100 AGAQGYCLKGIIAEKLVLALRSVAAGASWWDETATREIRSSIESSQSQSPEQNFTKSDHP 159 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G T++EIA L ++ TV ++ + KL+ +R QA+ A++ Sbjct: 160 LTGRELEILSLLAKGKTNQEIATALYITPGTVRVHVHAILHKLEVSDRHQAVVVALQKRL 219 Query: 234 I 234 I Sbjct: 220 I 220 >gi|315125633|ref|YP_004067636.1| response regulator receiver domain protein (CheY-like) [Pseudoalteromonas sp. SM9913] gi|315014146|gb|ADT67484.1| response regulator receiver domain protein (CheY-like) [Pseudoalteromonas sp. SM9913] Length = 204 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ + L N + G +VI L + + LT++E L+ Sbjct: 98 LSAGVKGFILKEAPSEELINALKKVMQGQ--KVIDPELAINALDDT--DPLTDKERKALK 153 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG + EIA++L +S T YL A KL+A NRI A A + G++ Sbjct: 154 LASDGLKTSEIAKQLYISEGTTRNYLSDAIAKLNATNRIDAARIARQKGWL 204 >gi|302559849|ref|ZP_07312191.1| LuxR family DNA-binding response regulator [Streptomyces griseoflavus Tu4000] gi|302477467|gb|EFL40560.1| LuxR family DNA-binding response regulator [Streptomyces griseoflavus Tu4000] Length = 230 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK-RSSAARNLT 175 L +GYV+ + L G A +I ++L+L ++ R+ A+ +T Sbjct: 110 LAAGASGYVLKSVADRDLVEACHATMRGEPFLYPGAVNALIHNYLDLAREGRALPAKAIT 169 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L +G+TS++IA L +S TV + + KL +R++ AIR G I Sbjct: 170 DREEEILKLVAEGHTSQQIAGLLVISPKTVERHRANLLAKLGLRDRLELTRYAIRVGLI 228 >gi|302865580|ref|YP_003834217.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302568439|gb|ADL44641.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 220 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTERE 178 G+++ + L + V A G +V+ LT RE Sbjct: 100 AGAAGFLLKDTPPDALRDAVRTVAGGDALLSPAVTRRVLAAAARSPVADPGRLAGLTARE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G G ++ EI + L LS T Y+ KL+A +R Q + A G + Sbjct: 160 RDVLAQVGAGRSNAEIGQALFLSPDTARTYVSRLLQKLNARDRAQLVVIAYESGLV 215 >gi|300779699|ref|ZP_07089555.1| LuxR family DNA-binding response regulator [Corynebacterium genitalium ATCC 33030] gi|300533809|gb|EFK54868.1| LuxR family DNA-binding response regulator [Corynebacterium genitalium ATCC 33030] Length = 198 Score = 95.0 bits (235), Expect = 7e-18, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 42/109 (38%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + V+ A L ++ L+ RE L+ Sbjct: 90 AGAMGYLLKDAPEDELHDAVVAAAQRERTLSPQVANTLAERVLKPDEALSGREIELLKAL 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIAE L +S TV +L KL NR A+ KA I Sbjct: 150 QTGMSNREIAEALFISQATVKTHLIHIYAKLGVDNRTAAVDKARERRII 198 >gi|239979192|ref|ZP_04701716.1| two-component system response regulator [Streptomyces albus J1074] gi|291451071|ref|ZP_06590461.1| two-component system response regulator [Streptomyces albus J1074] gi|291354020|gb|EFE80922.1| two-component system response regulator [Streptomyces albus J1074] Length = 213 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G+V+ LA V G + D S+ LT RE L Sbjct: 106 MDAGAAGFVVKDGPVEELAEAVRRVLRGET---VIDPALAAAALSAGPNPLTGRERDALN 162 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + DG T +IA +L LS TV YL +A K NR++A+ +A R G++ Sbjct: 163 ASADGATVADIAVRLRLSESTVRNYLSAAIGKTSTRNRMEAVREARRQGWL 213 >gi|166007196|pdb|2RNJ|A Chain A, Nmr Structure Of The S. Aureus Vrar Dna Binding Domain Length = 91 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 38/71 (53%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 KKR+ LTERE L L GY+++EIA +++ TV ++ + KL+ +R Q Sbjct: 20 MKKRAELYEMLTEREMEILLLIAKGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQ 79 Query: 224 AIAKAIRFGYI 234 A+ A + I Sbjct: 80 AVIYAFQHNLI 90 >gi|157144856|ref|YP_001452175.1| transcriptional regulator NarP [Citrobacter koseri ATCC BAA-895] gi|157082061|gb|ABV11739.1| hypothetical protein CKO_00584 [Citrobacter koseri ATCC BAA-895] Length = 215 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A+G ++++L ELF LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGANGGKVFSDRVSEYLRERELFGAEEDPFSVLTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|218437802|ref|YP_002376131.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218170530|gb|ACK69263.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 228 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 9/115 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK------KRSSAARNLTE 176 GY+ + L V + Y +V T F F S +LT+ Sbjct: 106 AGAKGYIFKINLVQQLGEAVNTVMNDKVYLPPEVATHFFHYFNTYCDPLSNSDKELDLTK 165 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE LQ G ++E+IA++L ++V TV A+L + KL NR QAI A++ Sbjct: 166 REKEVLQYLIQGLSNEQIAKQLYITVATVKAHLTAIFNKLGVKNRTQAIVAALKM 220 >gi|21221661|ref|NP_627440.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|1293660|gb|AAB08053.1| AbsA2 [Streptomyces coelicolor] gi|4490635|emb|CAB38597.1| two component system response regulator [Streptomyces coelicolor A3(2)] Length = 222 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARN--- 173 L G+++ S+ L + V A G +++T+ RS + Sbjct: 94 LDQGVAGFLLKASDPRDLISGVRAVASGGSCLSPLVARRLMTELRRAPSPRSEVSGERTT 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L + G G ++ EIA++L L T+ Y+ + +L+ NR+QA A G Sbjct: 154 LLTKREQEVLGMLGAGLSNAEIAQRLHLVEGTIKTYVSAIFTQLEVRNRVQAAIIAYEAG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|126172600|ref|YP_001048749.1| two component LuxR family transcriptional regulator [Shewanella baltica OS155] gi|152998897|ref|YP_001364578.1| two component LuxR family transcriptional regulator [Shewanella baltica OS185] gi|125995805|gb|ABN59880.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS155] gi|151363515|gb|ABS06515.1| two component transcriptional regulator, LuxR family [Shewanella baltica OS185] Length = 198 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ + L N + G +VI L + L ++E L+LA Sbjct: 94 AGVGGFLLKDAPSETLVNAIQQVMAGK--RVIDPELAMMAIGD--VDPLNDKERRALRLA 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ +IAE L ++ TV YL A KL+A NRI A A + G++ Sbjct: 150 SEGKSTADIAETLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGWL 198 >gi|302869854|ref|YP_003838491.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] gi|302572713|gb|ADL48915.1| regulatory protein LuxR [Micromonospora aurantiaca ATCC 27029] Length = 225 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 46/118 (38%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA------RNLTE 176 GYV T L + A G ++ L+ F R A LT Sbjct: 108 AGARGYVTKTISPEELTGAIRRVADGDAVFSPRLAGFVLDAFASRPDAPVADPELDQLTN 167 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L GY +EIA++L +S+ TV ++ + KL NR + A + Sbjct: 168 REREVLRLLARGYAYKEIAKELYISIKTVETHVSNVLRKLQMSNRYELSRWAADRRLV 225 >gi|262283887|gb|ACY40751.1| VisN [Rhizobium leguminosarum bv. viciae] Length = 262 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 24/229 (10%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTIN----SALDFPRRQQLICELHNYDLDSGDIPN 66 +S L L + + + A ++ L + S LDF ++ +DL DI N Sbjct: 53 VASTGRLQSGLRALTDYVGASHYLLARCDLLQESGLDF-----IVSSDWPFDLVR-DIAN 106 Query: 67 ILIETYGDDF-LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 L+ Y L P ++ S ++ +G + + F +G Sbjct: 107 DLVRGYARSTELEKCMQVFQP-------NFALLPDSAEVP---DGASRQYCSVTF--NVG 154 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + + E +L+ E + + G + FL + LT+RE CL Sbjct: 155 RSRLALMFLFGEGFILSPERLRDV-GLLAGYVASFLRCGGTKVDRDFELTDRELECLFWI 213 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 214 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 262 >gi|257067834|ref|YP_003154089.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558652|gb|ACU84499.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 211 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 3/112 (2%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 + +G+++ + L + + H V + + + LT +ET L Sbjct: 103 TMEAGAHGFMVKDTPVERLVDAIRRV-HQGLRAVDPELAA--QSLAVGPSPLTAKETEVL 159 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Q G ++ +IA+ L LS TV +L + KL NR +A+ A G+I Sbjct: 160 QTVATGASTAQIAQTLFLSEGTVRNHLSAVIGKLGVTNRAEAVRAASDNGWI 211 >gi|225022240|ref|ZP_03711432.1| hypothetical protein CORMATOL_02274 [Corynebacterium matruchotii ATCC 33806] gi|224944963|gb|EEG26172.1| hypothetical protein CORMATOL_02274 [Corynebacterium matruchotii ATCC 33806] Length = 216 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173 L NG+++ ++ L V A G + + A + Sbjct: 95 LTAGANGFLLKDADPETLIESVRTVAAGQTVLAADVVGHILPGALTVAADTLPSHVQQGL 154 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G+G T+ EIA +L +S TV ++ + K+ A +R+ A + Sbjct: 155 SLLTPREMEVLHAIGEGKTNAEIAAELVISATTVKTHVSNLLAKVHARDRVALAIIARKV 214 Query: 232 GY 233 G Sbjct: 215 GL 216 >gi|290963130|ref|YP_003494312.1| two-component response regulator [Streptomyces scabiei 87.22] gi|260652656|emb|CBG75789.1| putative two-component response regulator [Streptomyces scabiei 87.22] Length = 219 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTER 177 L G+++ + +L V A G A + L + LTER Sbjct: 100 LRNGACGFLLKDAPPSLLIEAVRAAARGDALVSPAVTVRLLKHLSPTRPDPDVGSVLTER 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E +L G T++EI ++L +S+ TV +L + K+DA NR++ A A G + Sbjct: 160 ERDVARLVAVGRTNQEICDRLVVSLSTVKTHLANIQQKIDARNRVEIAAWAWEQGVV 216 >gi|297563838|ref|YP_003682811.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848287|gb|ADH70305.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 206 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L V G T L + R A ++L++RE L L Sbjct: 96 AGATGYLLKDASPDELLRGVRAVHRGESVLAPTAVRHLMGQVRRPAGQSLSDRELQVLGL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ A +L +S ++ +L KL +R A+A+A R G + Sbjct: 156 VADGASNRAAAARLFISEASIKTHLQHVYNKLGVRDRAAAVAEAYRRGLL 205 >gi|212633209|ref|YP_002309734.1| regulatory protein LuxR:response regulator receiver [Shewanella piezotolerans WP3] gi|212554693|gb|ACJ27147.1| Regulatory protein, LuxR:Response regulator receiver [Shewanella piezotolerans WP3] Length = 188 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 4/108 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G+++ + L + G ++I L + S L ++E LQLAG Sbjct: 85 GVGGFLLKDAPSETLIKAINQVMAGK--RIIDPELAIMAVGES--DPLNDKERKALQLAG 140 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ EIA L ++ TV YL A KL A NRI A A + G++ Sbjct: 141 EGKSTSEIAAMLFIAEGTVRNYLSEAISKLHATNRIDAARIAQQKGWL 188 >gi|323968034|gb|EGB63445.1| response regulator receiver domain-containing protein [Escherichia coli M863] gi|327252458|gb|EGE64117.1| response regulator [Escherichia coli STEC_7v] Length = 215 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIAAVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|305680225|ref|ZP_07403033.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|305659756|gb|EFM49255.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 216 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173 L NG+++ ++ L V A G + + A + Sbjct: 95 LTAGANGFLLKDADPETLIESVRTVAAGQTVLAADVVGHILPGALTVAADTLPSHVQQGL 154 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G+G T+ EIA +L +S TV ++ + K+ A +R+ A + Sbjct: 155 SLLTPREMEVLHAIGEGKTNAEIAAELVISATTVKTHVSNLLAKVHARDRVALAIIARKV 214 Query: 232 GY 233 G Sbjct: 215 GL 216 >gi|148657384|ref|YP_001277589.1| two component LuxR family transcriptional regulator [Roseiflexus sp. RS-1] gi|148569494|gb|ABQ91639.1| two component transcriptional regulator, LuxR family [Roseiflexus sp. RS-1] Length = 214 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 3/109 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC--YQVITDFLELFK-KRSSAARNLTERETSCLQ 183 +G+ + T + AHG +V+ + + + +S LT+RE L+ Sbjct: 103 QADGFALKTDPPRQTIATIRNVAHGQIVFPRVVRQAADPSQTQHTSLLARLTQRERDVLR 162 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L +G + +IAE+L + TV +L + KL NR +A R G Sbjct: 163 LLAEGMPNAQIAERLVVQESTVKYHLQNIFQKLGVTNRTEAAQVYYREG 211 >gi|238059474|ref|ZP_04604183.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237881285|gb|EEP70113.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 204 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 3/103 (2%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 V LAN V A G + + D S A LT RE L+ A +G Sbjct: 105 VSKDVALSELANAVRTTAAG---ERVIDPCAAVAVLSPPANPLTRREREVLREAAEGVPL 161 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EIA +L L+ TV +L + K A NR++A+ A G++ Sbjct: 162 KEIARRLFLAHGTVRNHLSAIMHKTGARNRMEAVRLAQHEGWL 204 >gi|256378541|ref|YP_003102201.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255922844|gb|ACU38355.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 226 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNL-- 174 L +G++ + L + + A G A +++ F+ + + AA L Sbjct: 97 LQAGASGFLGKNVDPAELVTAIRVVAEGNALLSPKATRGLVSAFVAQSRPPAVAAPGLDL 156 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE + L G +++ IA L LS TV ++ A KL A +R Q + A + Sbjct: 157 VTGREREVMVLVAHGMSNDAIARHLFLSPLTVRTHVNRAMAKLGARDRAQLVVIAYQNRL 216 Query: 234 IC 235 + Sbjct: 217 VA 218 >gi|315109607|gb|EFT81583.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] Length = 224 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA------ 170 L +G+++ + L + G A ++I F+ + ++ Sbjct: 97 LRAGASGFMLKDAGPTELLAAIRAVRDGDSVVAPSATRRLIERFVPRQGEGAATITDPKL 156 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A Sbjct: 157 VETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYD 216 Query: 231 FGYI 234 G + Sbjct: 217 AGLV 220 >gi|254496211|ref|ZP_05109106.1| lipolytic enzyme / transcription regulator protein [Legionella drancourtii LLAP12] gi|254354603|gb|EET13243.1| lipolytic enzyme / transcription regulator protein [Legionella drancourtii LLAP12] Length = 505 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 38/73 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K LT RE CL + G T ++I+E L LS TVN + S K++ VN Sbjct: 433 MRKAVKKPLTQLTPRELQCLSMISKGMTIKKISEYLHLSSETVNTHAKSIRTKMNCVNIT 492 Query: 223 QAIAKAIRFGYIC 235 +A++KA R G + Sbjct: 493 EAVSKAFRLGLLS 505 >gi|271966618|ref|YP_003340814.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509793|gb|ACZ88071.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 220 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---N 173 L + +++ L V + A G +++ F + + Sbjct: 95 LRAGASAFLLKDVRPAELVEAVRVVARGDALLAPSVTRRLLDRFASVLPDPAGPPADLGR 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L ++ EIAE+L L+ TV ++ + KL +R+QA+ A G Sbjct: 155 LSEREVEVLRLVALALSNAEIAERLVLTEATVKTHVSAVLRKLGLRDRVQAVVLAYDVGL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|284029283|ref|YP_003379214.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808576|gb|ADB30415.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 215 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L G+++ + +L V A G +++ F + R++ LTE Sbjct: 97 LRAGACGFLVKDAGPNLLVEAVRAAADGESMVSPSVTARLLEHFTQAAAPRTARPHPLTE 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++ G T+ EI E+L +S+ TV ++L SA KL NR + A + Sbjct: 157 READVVRAVARGRTNGEITEELVVSLSTVKSHLASAQRKLGLRNRTELAVWAWENRLV 214 >gi|126661670|ref|ZP_01732679.1| Two Component Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] gi|126617044|gb|EAZ87904.1| Two Component Transcriptional Regulator, LuxR family protein [Cyanothece sp. CCY0110] Length = 201 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 36/62 (58%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G + +IAEKL ++V TV ++ + KL +R QA +A+R G Sbjct: 139 PLTERELDVLELIVGGCNNADIAEKLCITVGTVKTHVRNILNKLCVDDRTQAAVRALRSG 198 Query: 233 YI 234 + Sbjct: 199 LV 200 >gi|50843473|ref|YP_056700.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|289425764|ref|ZP_06427519.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289427938|ref|ZP_06429642.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|50841075|gb|AAT83742.1| putative two-component response regulator [Propionibacterium acnes KPA171202] gi|289153870|gb|EFD02576.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289158821|gb|EFD07021.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|313763833|gb|EFS35197.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313793774|gb|EFS41805.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313803088|gb|EFS44296.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313808301|gb|EFS46772.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313813848|gb|EFS51562.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313817004|gb|EFS54718.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313818081|gb|EFS55795.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313820939|gb|EFS58653.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313823990|gb|EFS61704.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313827075|gb|EFS64789.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313829809|gb|EFS67523.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313839286|gb|EFS77000.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314916571|gb|EFS80402.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314918956|gb|EFS82787.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314920977|gb|EFS84808.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926967|gb|EFS90798.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314932382|gb|EFS96213.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314956691|gb|EFT00943.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314959601|gb|EFT03703.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961786|gb|EFT05887.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964770|gb|EFT08870.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314968723|gb|EFT12821.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314979700|gb|EFT23794.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314988252|gb|EFT32343.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314990339|gb|EFT34430.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315079262|gb|EFT51265.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082275|gb|EFT54251.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315083754|gb|EFT55730.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315087395|gb|EFT59371.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315089812|gb|EFT61788.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315100153|gb|EFT72129.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315102475|gb|EFT74451.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315107818|gb|EFT79794.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] gi|327326525|gb|EGE68313.1| two-component system response regulator [Propionibacterium acnes HL096PA3] gi|327335184|gb|EGE76894.1| two-component system response regulator [Propionibacterium acnes HL097PA1] gi|327449654|gb|EGE96308.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327455799|gb|EGF02454.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456107|gb|EGF02762.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|327457944|gb|EGF04599.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|328757114|gb|EGF70730.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328757308|gb|EGF70924.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328757492|gb|EGF71108.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|332676424|gb|AEE73240.1| putative two-component response regulator [Propionibacterium acnes 266] Length = 224 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 52/124 (41%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSA------ 170 L +G+++ + L + G A ++I F+ + ++ Sbjct: 97 LRAGASGFMLKDAGPTELLAAIRAVRDGDSVVAPSATRRLIERFIPRQGEGAATITDPKL 156 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L G+G T+ EIAE+L L+ TV ++G KL +R+ + A Sbjct: 157 VETLSDREREVLTCVGEGLTNAEIAERLYLAETTVKTHIGHILSKLGLRDRVSMVITAYD 216 Query: 231 FGYI 234 G + Sbjct: 217 AGLV 220 >gi|300784836|ref|YP_003765127.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794350|gb|ADJ44725.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 212 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKR-SSAARNLT 175 L G+++ + +L V AHG +++ + +R + LT Sbjct: 93 LRAGACGFLLKDAGPNLLVEAVHAAAHGEALVSPAITTRLLAHYARRAPRRVTPPESPLT 152 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++ G T++EI L +S+ TV ++G+A KL NR + A G + Sbjct: 153 PRELDVVKAVARGETNDEICRSLVVSMPTVKTHIGAAKRKLGVRNRTEIAIWAWESGLV 211 >gi|297564113|ref|YP_003683086.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848562|gb|ADH70580.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 223 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ + LA + G Y + TD LT+RET L+ Sbjct: 116 LSSGARGFLAKDAPVDQLAGAIRRVHEGGRY-IDTDLAA--AAMVGGESPLTDRETEVLR 172 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG T IA L L+ TV YL +A K A NR+ AI A G++ Sbjct: 173 AASDGATVARIAAALHLTEGTVRNYLSNAIGKTGADNRMSAIRTAQDMGWL 223 >gi|290956290|ref|YP_003487472.1| respose regulatory protein [Streptomyces scabiei 87.22] gi|260645816|emb|CBG68907.1| putative respose regulatory protein [Streptomyces scabiei 87.22] Length = 238 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 38/110 (34%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G L + S L+ERE L Sbjct: 129 AGATGYLLKAERPEELFAAIRDAASGRTTLSAPVADRLMAQLRSPRPALSEREHEILGQL 188 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G + EIA L +S TV +LG KL R A+A A + Sbjct: 189 ARGLGNREIARALFISEATVKTHLGRIYAKLGVETRAGAVAVAKERRLLS 238 >gi|150391445|ref|YP_001321494.1| two component LuxR family transcriptional regulator [Alkaliphilus metalliredigens QYMF] gi|149951307|gb|ABR49835.1| two component transcriptional regulator, LuxR family [Alkaliphilus metalliredigens QYMF] Length = 201 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 2/112 (1%) Query: 122 VRLG--FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 +RL GY+I ++E +A ++ + G L + + LT RE Sbjct: 89 IRLAISAGAEGYLIKSTEVSSMAQQLRVLFSGTSVLDADVLKRLMQPQRKGFEELTPRER 148 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++L G ++ EIAE+L +S TV L KL +R Q R Sbjct: 149 DIVELVVQGLSNREIAEQLYISEGTVRNTLSIILEKLQVRDRTQLAIYYWRR 200 >gi|311895803|dbj|BAJ28211.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 209 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 42/110 (38%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ + L + A G + + S LT+RE L Sbjct: 99 SAGATGYLLKAEKPEELFAAIRSAAAGRPALSPPIASRVMAQMRSPLPQLTDREQDILDQ 158 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G G ++EIA L +S TV +LG KL A R A+A A + Sbjct: 159 LGQGLGNKEIARALFISEATVKTHLGRIYAKLGADTRSGAVAIAKERRLL 208 >gi|300859475|ref|YP_003784458.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300686929|gb|ADK29851.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302207158|gb|ADL11500.1| Two-component response regulator ChrA [Corynebacterium pseudotuberculosis C231] gi|302331719|gb|ADL21913.1| Two-component response regulator ChrA [Corynebacterium pseudotuberculosis 1002] gi|308277411|gb|ADO27310.1| Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Corynebacterium pseudotuberculosis I19] Length = 199 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 44/109 (40%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + V+ G L ++ S + L+ RE LQ Sbjct: 91 AGAMGYLLKDAPEAALHDAVVATFEGRRTLAPEVANALMQRVSKPRQALSTREIEILQNL 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ ++A KL +S TV +L KL NR AI A + I Sbjct: 151 EQGLSNRQLAAKLFISEATVKTHLVHIYSKLGVDNRTAAITAARQQRLI 199 >gi|294629076|ref|ZP_06707636.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292832409|gb|EFF90758.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 213 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ LA+ + G + D S+ LT RE L + Sbjct: 108 AGAAGFLVKDGPVEELASAIRRVLAGET---VVDPALAAAALSAGPSPLTARECDVLNAS 164 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T +IA +L LS TV YL +A K NR +A+ +A + G++ Sbjct: 165 ADGATVADIASRLHLSESTVRNYLSAAIGKTGTRNRTEALREARQRGWL 213 >gi|271962774|ref|YP_003336970.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270505949|gb|ACZ84227.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 212 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + + A G ++ L+ F + +LT+RE Sbjct: 97 GARGYVTKTISGRELTDAIRRVADGDAVFSPRLAGFVLDAFASSEAPPIDPELDSLTQRE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV ++ S KL NR + A + Sbjct: 157 REVLRLIARGYAYKEIAKELFISVKTVETHVSSVLRKLQLSNRHELSRWATARRLV 212 >gi|295836038|ref|ZP_06822971.1| two-component system response regulator [Streptomyces sp. SPB74] gi|197695120|gb|EDY42053.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 223 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--L 174 L G+++ + + V + A G ++I++F + L Sbjct: 95 LRAGACGFLVKDMALDAILDAVRVVAAGDALIAPTVTRRLISEFAHRAEAEPPTPVPTGL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G G ++ E+A + +S T Y+ KL A +R+Q + A + Sbjct: 155 TNREREVLVLVGQGLSNTELAHHMHISTATAKTYVSRLLTKLGARDRVQLVITAYEMKLV 214 >gi|161520265|ref|YP_001583692.1| two component LuxR family transcriptional regulator [Burkholderia multivorans ATCC 17616] gi|189353558|ref|YP_001949185.1| two-component system nitrate/nitrite response regulator [Burkholderia multivorans ATCC 17616] gi|160344315|gb|ABX17400.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans ATCC 17616] gi|189337580|dbj|BAG46649.1| two-component system nitrate/nitrite response regulator [Burkholderia multivorans ATCC 17616] Length = 209 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 7/116 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE------LFKKRSSAARNLTERE 178 GYV ++ L + +++ +G Y V L+ + R +A LT R+ Sbjct: 95 AHGALGYVPKSASPHTLLSAIVMVLNGERY-VPPLLLDDGAPYTIEPPRHAAGAPLTPRQ 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G ++ IA++LGLS TV A++ + L +NR QA A + G I Sbjct: 154 IEVLRYLAEGVPNKVIADRLGLSEKTVKAHITAIFRTLHVLNRTQAAAAGRKAGLI 209 >gi|58039805|ref|YP_191769.1| two component response regulator [Gluconobacter oxydans 621H] gi|58002219|gb|AAW61113.1| Two component response regulator [Gluconobacter oxydans 621H] Length = 224 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 36/101 (35%), Positives = 48/101 (47%), Gaps = 3/101 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + LA + A G + D E + L+ERE + L+ Sbjct: 94 LQAGVRGYMLKDAPITQLAAAIRKVAAGG-RAIAPDLAE--AVWDALPDPLSERERAMLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LA G T+ EIAE+L LS TV Y KLDA NRI+A Sbjct: 151 LAEAGRTNREIAEELSLSSGTVRNYFSEIVQKLDARNRIEA 191 >gi|333001333|gb|EGK20901.1| response regulator [Shigella flexneri VA-6] Length = 215 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G + + +L E+F LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRTGAKGNKVFSERVNQYLREREMFGAEEDPFSVLTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|303256662|ref|ZP_07342676.1| nitrate/nitrite response regulator protein NarL [Burkholderiales bacterium 1_1_47] gi|330999299|ref|ZP_08323016.1| nitrate/nitrite response regulator protein NarL [Parasutterella excrementihominis YIT 11859] gi|302860153|gb|EFL83230.1| nitrate/nitrite response regulator protein NarL [Burkholderiales bacterium 1_1_47] gi|329575157|gb|EGG56708.1| nitrate/nitrite response regulator protein NarL [Parasutterella excrementihominis YIT 11859] Length = 214 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 7/111 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERET 179 +GY++ E + ++ A G + E + LTERE Sbjct: 100 GADGYLLKDQEPEQILEDIQKAAKGQTVLSASMNQALAECLREESFSKERRVSELTEREK 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 S L+L G T++EI + L +S TV ++ KL +R++A A Sbjct: 160 SVLKLIAQGKTNKEIGKALEISDGTVKVHVKHVLHKLSFRSRVEAAVWAKE 210 >gi|293390864|ref|ZP_06635198.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951398|gb|EFE01517.1| nitrate/nitrite response regulator protein NarP [Aggregatibacter actinomycetemcomitans D7S-1] Length = 209 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L +++ A G I + L + +LT+RE L Sbjct: 98 DAGADGYLLKDTEPDTLLSQLKRIARGEVILSDSIKNLLLERQSAQEPIYSLTDREMGVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +L G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 158 RLIATGLSNKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|295105926|emb|CBL03469.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Gordonibacter pamelaeae 7-10-1-b] Length = 214 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 7/119 (5%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLT 175 L GYV+ S L + V A G Y + + ++ + + L+ Sbjct: 94 TLRGGAAGYVLKNSTSEELLSAVHAVAGGGSYIHPKMAALLTKQLVGAGEEEDRSYQQLS 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQL GYT++EI+E++ LSV TV A+ KL R ++ A+ + Sbjct: 154 NRELEILQLLAKGYTNKEISEQVYLSVKTVEAHRSKIYKKLGFKTRADLVSYALEHKLL 212 >gi|302555046|ref|ZP_07307388.1| luxR family two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302472664|gb|EFL35757.1| luxR family two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 233 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 10/116 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR-------NLT 175 +GYV+ L + V A G + + + + +L+ Sbjct: 107 AGASGYVLKQIRGSDLVSAVRTVASGRSMLDPETTARLMRSLRADPAEEPGLAPELASLS 166 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L L GDG T+ EI +KL LS TV ++ KL R+QA A + Sbjct: 167 PREREILALIGDGLTNREIGKKLYLSEKTVKNHISRLLAKLGVQRRVQAAVLASQL 222 >gi|302547743|ref|ZP_07300085.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302465361|gb|EFL28454.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 227 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 39/109 (35%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G L + + L+ERE LQ Sbjct: 118 AGATGYLLKAERPEELFAAIRNAAAGRTALSAPVADRLMAQMRTPRPTLSERERDILQQL 177 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +LG KL R A+A A + Sbjct: 178 ARGLGNREIARALFISEATVKTHLGRIYGKLGVDTRAGAVAVATGRRLL 226 >gi|148255164|ref|YP_001239749.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146407337|gb|ABQ35843.1| putative transcriptional regulatory protein, LuxR family [Bradyrhizobium sp. BTAi1] Length = 140 Score = 95.0 bits (235), Expect = 8e-18, Method: Composition-based stats. Identities = 29/62 (46%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G +++EIA LG+SVHT ++GS KLDA R A+A A R G Sbjct: 77 QLTARERDVLALMAEGCSNKEIARSLGISVHTAKFHVGSLLDKLDATGRTDAVAHAARRG 136 Query: 233 YI 234 I Sbjct: 137 II 138 >gi|324996115|gb|EGC28026.1| DNA-binding response regulator [Streptococcus sanguinis SK678] gi|327460591|gb|EGF06926.1| DNA-binding response regulator [Streptococcus sanguinis SK1] gi|327488948|gb|EGF20745.1| DNA-binding response regulator [Streptococcus sanguinis SK1058] gi|332365506|gb|EGJ43266.1| DNA-binding response regulator [Streptococcus sanguinis SK1059] Length = 199 Score = 94.6 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + ++ L+++E LQ A Sbjct: 95 ADVDAYVLKERSIADLMKTIHTVLDGQKEY----SPELMEVLMTSRNPLSQQERLVLQAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIAEKL LS TV Y+ + KLDA NR +A+ G++ Sbjct: 151 ATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENRTEAVRIGQEQGWL 199 >gi|320162421|ref|YP_004175646.1| putative LysR family transcriptional regulator [Anaerolinea thermophila UNI-1] gi|319996275|dbj|BAJ65046.1| putative LysR family transcriptional regulator [Anaerolinea thermophila UNI-1] Length = 455 Score = 94.6 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 36/62 (58%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE L+L G +++EIA+ L +S +TV +L + K+ V+R +A AIR Sbjct: 7 EPLSEREIEILRLVATGASNKEIAQALSISPNTVKVHLRNIFAKIGVVSRTEATLYAIRN 66 Query: 232 GY 233 G Sbjct: 67 GI 68 >gi|284042733|ref|YP_003393073.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946954|gb|ADB49698.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 226 Score = 94.6 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFK--KRSSAARNL 174 L G+++ + +L + + A ++I F E+ +R++ L Sbjct: 97 LRAGAAGFLLKDAPPQVLIDAIRSVGAGHGLIAPEVTRRLIARFAEVSPAAERATELEEL 156 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE L G ++ EIA L + T+ +++ KL +R+QA+ A G + Sbjct: 157 SPREHEVLLQIARGRSNAEIAAALVVEESTIKSHVSRLLSKLGCSSRVQAVILAYEVGLV 216 Query: 235 C 235 Sbjct: 217 T 217 >gi|239930320|ref|ZP_04687273.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438665|ref|ZP_06578055.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291341560|gb|EFE68516.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 206 Score = 94.6 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I H V + ++ LT RE L+ Sbjct: 99 LAAGVRGFVPKTVSAQRLA-EIIRTVHAGNRYVDPELAA--DAIAAGDSPLTAREAEVLE 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG EIAE+ LS TV YL SA KL A NR A+ A G++ Sbjct: 156 LAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGAENRHTAVRLARERGWV 206 >gi|188585327|ref|YP_001916872.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350014|gb|ACB84284.1| two component transcriptional regulator, LuxR family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 213 Score = 94.6 bits (234), Expect = 8e-18, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 42/109 (38%), Gaps = 7/109 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTERE 178 +GY++ L VI A G +V+ R + LT RE Sbjct: 96 AGASGYLMKEVRIKSLVESVIKAAEGEQIMDAKTTEKVLEYMRNKNPNRENPTDILTNRE 155 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L L G T+ EI E+L LS TV L KLD NR QA A Sbjct: 156 MDILDLVAKGKTNSEIGEELHLSEKTVRNQLSRILNKLDLNNRTQAAAY 204 >gi|333002916|gb|EGK22472.1| response regulator [Shigella flexneri K-272] gi|333016922|gb|EGK36246.1| response regulator [Shigella flexneri K-227] Length = 215 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRTGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|146319339|ref|YP_001199051.1| response regulator [Streptococcus suis 05ZYH33] gi|146321541|ref|YP_001201252.1| response regulator [Streptococcus suis 98HAH33] gi|253752368|ref|YP_003025509.1| response regulator protein [Streptococcus suis SC84] gi|253754194|ref|YP_003027335.1| response regulator protein [Streptococcus suis P1/7] gi|253756128|ref|YP_003029268.1| response regulator protein [Streptococcus suis BM407] gi|145690145|gb|ABP90651.1| Response regulator [Streptococcus suis 05ZYH33] gi|145692347|gb|ABP92852.1| Response regulator [Streptococcus suis 98HAH33] gi|251816657|emb|CAZ52298.1| response regulator protein [Streptococcus suis SC84] gi|251818592|emb|CAZ56426.1| response regulator protein [Streptococcus suis BM407] gi|251820440|emb|CAR47123.1| response regulator protein [Streptococcus suis P1/7] gi|319758772|gb|ADV70714.1| response regulator [Streptococcus suis JS14] Length = 200 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 4/110 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + LT E+ L+L Sbjct: 95 ADVDAYVLKERSIADLMRTIETVLAGRKEY----SPELMDILLTQRSPLTNLESQLLKLV 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G +++EIA +L LS TV Y+ S KL A NR A+ A G++ Sbjct: 151 AEGLSNKEIACQLHLSDGTVRNYMTSILSKLGAENRTAAVKVAQEKGWLV 200 >gi|227820843|ref|YP_002824813.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] gi|227339842|gb|ACP24060.1| predicted LuxR family transcriptional regulator [Sinorhizobium fredii NGR234] Length = 245 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 1/116 (0%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 + +G + ++ E ++L+ E + + + F R LTERE Sbjct: 131 SVTFNVGRSRFSLMLLFPEDVILSQEGLRDIAVLASYL-ASFKAGAGVRHDRDFELTERE 189 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 CL +G TSEEIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 190 IECLFWIAEGKTSEEIAVILGISRNTINNYITSVMRKTATRTRSEAIAHAVRHNLV 245 >gi|226304519|ref|YP_002764477.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226183634|dbj|BAH31738.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 220 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLE-----LFKKRSSAA 171 L G+++ ++ L++ V+ A G ++I +F + RS + Sbjct: 94 LDSGAAGFLLKDADPEELSSAVLTVAEGGSVLSPRLTSRLIVEFARRKPAPMSTARSGSD 153 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE +QL G + +IA+ L L TV +++ + KL R+Q + A R Sbjct: 154 HGLSAREMDVVQLLSQGLGNNDIADSLSLEQSTVKSHISNICKKLQVRTRVQIVIWAYRN 213 Query: 232 GYIC 235 I Sbjct: 214 NVIA 217 >gi|74312714|ref|YP_311133.1| transcriptional regulator NarP [Shigella sonnei Ss046] gi|82776204|ref|YP_402553.1| transcriptional regulator NarP [Shigella dysenteriae Sd197] gi|157156289|ref|YP_001463544.1| transcriptional regulator NarP [Escherichia coli E24377A] gi|157161674|ref|YP_001458992.1| transcriptional regulator NarP [Escherichia coli HS] gi|170019493|ref|YP_001724447.1| transcriptional regulator NarP [Escherichia coli ATCC 8739] gi|170679777|ref|YP_001744386.1| transcriptional regulator NarP [Escherichia coli SMS-3-5] gi|187730582|ref|YP_001879462.1| transcriptional regulator NarP [Shigella boydii CDC 3083-94] gi|188495436|ref|ZP_03002706.1| nitrate/nitrite response regulator NarP [Escherichia coli 53638] gi|191165388|ref|ZP_03027230.1| nitrate/nitrite response regulator NarP [Escherichia coli B7A] gi|193062271|ref|ZP_03043366.1| nitrate/nitrite response regulator NarP [Escherichia coli E22] gi|194427123|ref|ZP_03059674.1| nitrate/nitrite response regulator NarP [Escherichia coli B171] gi|194436209|ref|ZP_03068311.1| nitrate/nitrite response regulator NarP [Escherichia coli 101-1] gi|209919652|ref|YP_002293736.1| transcriptional regulator NarP [Escherichia coli SE11] gi|218554761|ref|YP_002387674.1| transcriptional regulator NarP [Escherichia coli IAI1] gi|218695805|ref|YP_002403472.1| transcriptional regulator NarP [Escherichia coli 55989] gi|218700662|ref|YP_002408291.1| transcriptional regulator NarP [Escherichia coli IAI39] gi|218705722|ref|YP_002413241.1| transcriptional regulator NarP [Escherichia coli UMN026] gi|253772883|ref|YP_003035714.1| transcriptional regulator NarP [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162205|ref|YP_003045313.1| transcriptional regulator NarP [Escherichia coli B str. REL606] gi|256017639|ref|ZP_05431504.1| transcriptional regulator NarP [Shigella sp. D9] gi|256022125|ref|ZP_05435990.1| transcriptional regulator NarP [Escherichia sp. 4_1_40B] gi|260844795|ref|YP_003222573.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O103:H2 str. 12009] gi|260856180|ref|YP_003230071.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O26:H11 str. 11368] gi|260868909|ref|YP_003235311.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O111:H- str. 11128] gi|297520422|ref|ZP_06938808.1| transcriptional regulator NarP [Escherichia coli OP50] gi|301024278|ref|ZP_07187969.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 196-1] gi|307138849|ref|ZP_07498205.1| transcriptional regulator NarP [Escherichia coli H736] gi|307311230|ref|ZP_07590874.1| two component transcriptional regulator, LuxR family [Escherichia coli W] gi|309786632|ref|ZP_07681253.1| response regulator [Shigella dysenteriae 1617] gi|312973555|ref|ZP_07787727.1| response regulator [Escherichia coli 1827-70] gi|331663697|ref|ZP_08364607.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA143] gi|331668898|ref|ZP_08369746.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA271] gi|331683869|ref|ZP_08384465.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H299] gi|73856191|gb|AAZ88898.1| nitrate/nitrite response regulator [Shigella sonnei Ss046] gi|81240352|gb|ABB61062.1| nitrate/nitrite response regulator [Shigella dysenteriae Sd197] gi|157067354|gb|ABV06609.1| nitrate/nitrite response regulator NarP [Escherichia coli HS] gi|157078319|gb|ABV18027.1| nitrate/nitrite response regulator NarP [Escherichia coli E24377A] gi|169754421|gb|ACA77120.1| two component transcriptional regulator, LuxR family [Escherichia coli ATCC 8739] gi|170517495|gb|ACB15673.1| nitrate/nitrite response regulator NarP [Escherichia coli SMS-3-5] gi|187427574|gb|ACD06848.1| nitrate/nitrite response regulator NarP [Shigella boydii CDC 3083-94] gi|188490635|gb|EDU65738.1| nitrate/nitrite response regulator NarP [Escherichia coli 53638] gi|190904551|gb|EDV64258.1| nitrate/nitrite response regulator NarP [Escherichia coli B7A] gi|192931937|gb|EDV84536.1| nitrate/nitrite response regulator NarP [Escherichia coli E22] gi|194414744|gb|EDX31015.1| nitrate/nitrite response regulator NarP [Escherichia coli B171] gi|194424937|gb|EDX40922.1| nitrate/nitrite response regulator NarP [Escherichia coli 101-1] gi|209912911|dbj|BAG77985.1| nitrate/nitrite response regulator [Escherichia coli SE11] gi|218352537|emb|CAU98316.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli 55989] gi|218361529|emb|CAQ99120.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli IAI1] gi|218370648|emb|CAR18457.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli IAI39] gi|218432819|emb|CAR13713.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli UMN026] gi|242377829|emb|CAQ32596.1| narP [Escherichia coli BL21(DE3)] gi|253323927|gb|ACT28529.1| two component transcriptional regulator, LuxR family [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974106|gb|ACT39777.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli B str. REL606] gi|253978273|gb|ACT43943.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli BL21(DE3)] gi|257754829|dbj|BAI26331.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O26:H11 str. 11368] gi|257759942|dbj|BAI31439.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O103:H2 str. 12009] gi|257765265|dbj|BAI36760.1| DNA-binding response regulator NarP in two-component regulatory system with NarQ or NarX [Escherichia coli O111:H- str. 11128] gi|284922185|emb|CBG35267.1| nitrate/nitrite response regulator protein [Escherichia coli 042] gi|299880482|gb|EFI88693.1| putative nitrate/nitrite response regulator protein NarL [Escherichia coli MS 196-1] gi|306908736|gb|EFN39233.1| two component transcriptional regulator, LuxR family [Escherichia coli W] gi|308925541|gb|EFP71027.1| response regulator [Shigella dysenteriae 1617] gi|309702505|emb|CBJ01831.1| nitrate/nitrite response regulator protein [Escherichia coli ETEC H10407] gi|310332150|gb|EFP99385.1| response regulator [Escherichia coli 1827-70] gi|315061500|gb|ADT75827.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli W] gi|315615453|gb|EFU96085.1| response regulator [Escherichia coli 3431] gi|320177206|gb|EFW52214.1| Nitrate/nitrite response regulator protein [Shigella dysenteriae CDC 74-1112] gi|320199790|gb|EFW74379.1| Nitrate/nitrite response regulator protein [Escherichia coli EC4100B] gi|323152251|gb|EFZ38541.1| response regulator [Escherichia coli EPECa14] gi|323161744|gb|EFZ47626.1| response regulator [Escherichia coli E128010] gi|323168652|gb|EFZ54332.1| response regulator [Shigella sonnei 53G] gi|323171865|gb|EFZ57509.1| response regulator [Escherichia coli LT-68] gi|323184184|gb|EFZ69561.1| response regulator [Escherichia coli 1357] gi|323377920|gb|ADX50188.1| two component transcriptional regulator, LuxR family [Escherichia coli KO11] gi|323936807|gb|EGB33092.1| response regulator receiver domain-containing protein [Escherichia coli E1520] gi|323940739|gb|EGB36927.1| response regulator receiver domain-containing protein [Escherichia coli E482] gi|323945009|gb|EGB41074.1| response regulator receiver domain-containing protein [Escherichia coli H120] gi|323961585|gb|EGB57192.1| response regulator receiver domain-containing protein [Escherichia coli H489] gi|323972986|gb|EGB68182.1| response regulator receiver domain-containing protein [Escherichia coli TA007] gi|323977610|gb|EGB72696.1| response regulator receiver domain-containing protein [Escherichia coli TW10509] gi|324117918|gb|EGC11817.1| response regulator receiver domain-containing protein [Escherichia coli E1167] gi|331059496|gb|EGI31473.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA143] gi|331064092|gb|EGI36003.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA271] gi|331078821|gb|EGI50023.1| nitrate/nitrite response regulator protein NarP [Escherichia coli H299] gi|332343973|gb|AEE57307.1| response regulator protein [Escherichia coli UMNK88] Length = 215 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|311897240|dbj|BAJ29648.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 200 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ T LA + G Y D + S+ LT RET L+ Sbjct: 93 LEVGVRGFLPKTVSASDLAGIIRTVRAGGRY---VDPELAAEAISAGDSPLTPRETDVLE 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG EIAE+ LS TV YL SA KL A NR A+ A G++ Sbjct: 150 LAADGSPVAEIAERAALSPGTVRNYLSSAAGKLGAENRHAAVRIAREHGWL 200 >gi|330468305|ref|YP_004406048.1| NarL family two-component response regulator [Verrucosispora maris AB-18-032] gi|328811276|gb|AEB45448.1| NarL family two-component response regulator [Verrucosispora maris AB-18-032] Length = 219 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR--NLTERE 178 L +GY++ + + V A+G ++ + F + ++ LT+RE Sbjct: 102 LRAGASGYLLKGAAPQQVERGVRAVANGELLLGPEIGARAVGFFVRGAAPVPFPQLTDRE 161 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G + IA +L LS TV +L + VK+ +R QAI +A G Sbjct: 162 REILDHVAQGLDNATIAHRLALSPKTVRNHLSNILVKIGVGDRAQAIVRAREQGL 216 >gi|323356651|ref|YP_004223047.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323273022|dbj|BAJ73167.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 221 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G++ +E + V+ G +I ++ + Sbjct: 96 LRAGASGFIGKGAEPEDIVRAVLSVHEGGALLSPAATRALIEKYVRTTGAADVPSPVSLD 155 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G +++EIA L +S HT ++ + +KL A +R Q + A G Sbjct: 156 ALTDREREVLLHVARGRSNDEIAAHLYISPHTAKTHVKNTMLKLGAHDRAQLVIAAYESG 215 Query: 233 YIC 235 + Sbjct: 216 LLA 218 >gi|294633266|ref|ZP_06711825.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14] gi|292831047|gb|EFF89397.1| LuxR family DNA-binding response regulator [Streptomyces sp. e14] Length = 230 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 9/115 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK------KRSSAARNLTE 176 +GYV+ + L + V A G T + + ++ A LTE Sbjct: 107 AGASGYVLKQIQGSDLVSAVRTVARGQSLLDPSATTKLMARLRGGQQQEEQPDALPGLTE 166 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L L G+G T+ +I ++L L+ TV ++ KL RIQA A + Sbjct: 167 REREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQA 221 >gi|238786137|ref|ZP_04630091.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC 43970] gi|238712965|gb|EEQ05023.1| Transcriptional activator protein echR [Yersinia bercovieri ATCC 43970] Length = 245 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 74/229 (32%), Gaps = 19/229 (8%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICE--LHNYDLDSGDIPNILIETYGDDFLFHFN 81 I+N I+ R A + + ++ + + NY LD D + Sbjct: 15 IKNYIQRRIKAYGDLRYSYLVMNKKTPLHPAIISNYPLDWIKEYKKNSYHLIDPVILTAK 74 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS---EF 138 + P W + + L G F + H + ++ + Sbjct: 75 DKVAPFAWDDNSVINKKSTDSAV-FNLAREYNIINGYTFVLHDNNHNMATLNISNGNDDS 133 Query: 139 LMLANEVIIEAHGACYQVI---TDFLELFKKRSSAARNL----------TERETSCLQLA 185 + + I +I L L++K ++ + L + RE L A Sbjct: 134 IYFDESIEINKEKIQMLLILTHDKMLGLYQKNNNENKELGRSAAEREIFSPRENEILYWA 193 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EIA LG+ TV ++G+ KL +N AI I I Sbjct: 194 SVGKTYSEIAIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 242 >gi|224552978|gb|ACN54738.1| PagR [Pantoea agglomerans] Length = 210 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 10/185 (5%) Query: 56 NYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSG---QLSVRLEGGL 112 N + + DI + D + + W E VI S G Sbjct: 28 NNNPEWFDIYLERKYQFIDPVIIQSLRCVEDFFW----ENNVILSGGYNLTRIFNESFQY 83 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKR-SS 169 F G FP+ + + S + + + ++ L L+ + Sbjct: 84 NIFQGQTFPLHDYLNNLALLSIISHKDSGIDMEKNRSKIVSFLIKLHQKTLNLYSQHHQK 143 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ G T E+A L ++ TV ++G+ KL N A+ Sbjct: 144 KNVFLSPRERQILKWVXAGKTYAEVAVILSIAERTVKFHMGNVMKKLGVNNATHAVKLGT 203 Query: 230 RFGYI 234 + Sbjct: 204 ELRLL 208 >gi|27362891|gb|AAN86997.1| virulence regulator [Pectobacterium carotovorum subsp. carotovorum] Length = 204 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 37/159 (23%), Positives = 67/159 (42%), Gaps = 20/159 (12%) Query: 88 IWQSIQEETVI-------ESSGQLSVRLEGGLLPFAGIAFPVR------------LGFHK 128 +W + E + + + SG+ S+ LE + G++ + L H Sbjct: 38 VWSCLDEMSQVFILLNCNQESGEYSIFLETLHEKYIGVSVIIMVDTIERHILNNYLKHHV 97 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQLAGD 187 G V+ TS +A + + G + E + +S L+ER+ LQL Sbjct: 98 MGVVLKTSPVDSIAQALKTVSMGMVCLPDDGVIYEGWSVDNSVKGKLSERQHEVLQLIAS 157 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 G ++++I+ L +S TV ++L S +L+ NR QA Sbjct: 158 GASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196 >gi|30063633|ref|NP_837804.1| transcriptional regulator NarP [Shigella flexneri 2a str. 2457T] gi|56480063|ref|NP_708089.2| transcriptional regulator NarP [Shigella flexneri 2a str. 301] gi|110806169|ref|YP_689689.1| transcriptional regulator NarP [Shigella flexneri 5 str. 8401] gi|30041886|gb|AAP17613.1| nitrate/nitrite response regulator (sensor NarQ) [Shigella flexneri 2a str. 2457T] gi|56383614|gb|AAN43796.2| nitrate/nitrite response regulator (sensor NarQ) [Shigella flexneri 2a str. 301] gi|110615717|gb|ABF04384.1| nitrate/nitrite response regulator [Shigella flexneri 5 str. 8401] gi|281601644|gb|ADA74628.1| Nitrate/nitrite response regulator [Shigella flexneri 2002017] gi|313651305|gb|EFS15703.1| response regulator [Shigella flexneri 2a str. 2457T] gi|332754834|gb|EGJ85199.1| response regulator [Shigella flexneri 4343-70] gi|332755237|gb|EGJ85601.1| response regulator [Shigella flexneri K-671] gi|332756240|gb|EGJ86591.1| response regulator [Shigella flexneri 2747-71] gi|332766006|gb|EGJ96216.1| response regulator [Shigella flexneri 2930-71] gi|333001907|gb|EGK21473.1| response regulator [Shigella flexneri K-218] gi|333016648|gb|EGK35977.1| response regulator [Shigella flexneri K-304] Length = 215 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRTGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|239981000|ref|ZP_04703524.1| response regulatory protein [Streptomyces albus J1074] gi|291452866|ref|ZP_06592256.1| response regulatory protein [Streptomyces albus J1074] gi|291355815|gb|EFE82717.1| response regulatory protein [Streptomyces albus J1074] Length = 219 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 36/109 (33%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + LT RE L+ Sbjct: 110 AGATGYLLKAERPEELFTAIRAAASGRTALSPPVAQRVMTHLRNPQPELTPRERDILRHL 169 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +LG KL R A+A + Sbjct: 170 TQGLGNREIARALFISEATVKTHLGRIYQKLGVETRAGAVAVGKERRLL 218 >gi|226228812|ref|YP_002762918.1| putative NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] gi|226092003|dbj|BAH40448.1| putative NarL family two-component response regulator [Gemmatimonas aurantiaca T-27] Length = 207 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 Y + L + + G Y+ + + S LT RE L L Sbjct: 99 AGARAYTLKNHVRRDLLDTIRKVFAG--YKYVDPEVAGQMAEHSGEEGLTSRELQILHLV 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++ I L +S TV ++ + KLDA +R A+ AIR G I Sbjct: 157 AGGLSNKRITSSLAISEDTVKGHVSNILSKLDANDRTHAVTLAIRRGVI 205 >gi|300087957|ref|YP_003758479.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527690|gb|ADJ26158.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 229 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLE--LFKKRSSAARNL 174 L GY++ + L V A G Y + I +++ ++ +S L Sbjct: 95 LRAGARGYILKEASVDELVAAVREVAAGRHYLSTELSQRAIAYYIKQPSAEEETSPYEQL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE L L YT +IA+KL +S TV A+ + KL NR Q I ++ G + Sbjct: 155 SNREREVLHLVVRDYTGADIAKKLFISPRTVEAHRANLMRKLGMKNRTQLIKFCLQNGIL 214 >gi|158318837|ref|YP_001511345.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158114242|gb|ABW16439.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 214 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--------VITDFLELFKKRSSAARNLT 175 L G++ + L + + A G + +LT Sbjct: 96 LRAGACGFLPKDTRPDALLDAIRTIAAGEALLSPGATRAVITRALSHPDAPAPERLASLT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+L G +++EIA++L +S T ++G K+ A +R+ + A G Sbjct: 156 AREREVLRLIAAGRSNQEIADELVVSPLTAKTHVGRILAKMGARDRVHLVIAAYEAGL 213 >gi|313840174|gb|EFS77888.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] Length = 206 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G+++ + LA V+ + H + + L+ RE L+ Sbjct: 99 MDAGVAGFLVKDTPAEDLAQ-VVRKVHAGGRAIDPALAA--ESLIEGHNPLSGREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A R G++ Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206 >gi|253686983|ref|YP_003016173.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753561|gb|ACT11637.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 204 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 1/104 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCL 182 L H G V+ TS +A + + G + E + +S L+ER+ L Sbjct: 93 LKHHVMGVVLKTSPVDSIAQALKTVSMGMVCLPDDGVIYEGWSVDNSVKGKLSERQHEVL 152 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 QL G ++++I+ L +S TV ++L S +L+ NR QA Sbjct: 153 QLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196 >gi|258652817|ref|YP_003201973.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258556042|gb|ACV78984.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 217 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 8/118 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR-NLTE 176 GYV+ + G + ++ +L+ + R LT Sbjct: 98 SAGAAGYVLKRQADQDIVEACRAALRGESFIYPAALTSLMRTYLDRLARGERPGRGPLTP 157 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++L +G++++EIA+ L +S TV+ + + KLD +R+ AIR G I Sbjct: 158 READVVKLIAEGHSAQEIADCLSISPRTVDRHRANILEKLDLRDRVDLTRYAIRAGLI 215 >gi|311896508|dbj|BAJ28916.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 203 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 2/106 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 GY+ + L V +++ L AA LT RE L+ G Sbjct: 99 RGYLHKDASRAELRATVTQALADPTWRLAPR--RLRSPDMGAAPTLTAREIQVLEGMSHG 156 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EI +L LS TV + KL A +R A+A R+G + Sbjct: 157 RSNAEIGRELFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLV 202 >gi|308177612|ref|YP_003917018.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307745075|emb|CBT76047.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 205 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 41/109 (37%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + + + A G + + LT+RE L Sbjct: 97 AGAAGYLLKDVSAQTIVDSIRQAALGNVVLAPEMTQRVVEGMRRPKVELTKREKDVLVQL 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++IA+ L +S TV +L KL A R AI KA G + Sbjct: 157 ATGAANKQIAKALFVSEATVKTHLVHIFDKLQATTRTDAINKAQDLGLL 205 >gi|271965920|ref|YP_003340116.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509095|gb|ACZ87373.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 219 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN-LT 175 L G+++ +E L V + A G ++I +++ + + LT Sbjct: 96 LRAGACGFMVKDTEPADLLQGVRVAARGDALLSPAITRRLIAEYVARRPASAPEGLDVLT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L G +++EIA + +S T ++ A KL A +R Q + A G + Sbjct: 156 NREREVTALVARGLSNDEIAVHMVISPTTAKTHVSRAMTKLRARDRAQLVVFAYESGLVT 215 >gi|182437656|ref|YP_001825375.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778292|ref|ZP_08237557.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178466172|dbj|BAG20692.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658625|gb|EGE43471.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 206 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I H V + S+ LT RE L+ Sbjct: 99 LAAGVRGFVPKTVSARRLA-EIIRTVHAGNRYVDPELAA--DAISAGDSPLTAREAEVLE 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG EIAE+ LS TV YL SA K+ A NR A+ A G++ Sbjct: 156 LAADGAPVAEIAERASLSQGTVRNYLSSAATKIGAENRHTAVRLARERGWV 206 >gi|169833204|ref|YP_001695355.1| response regulator [Streptococcus pneumoniae Hungary19A-6] gi|168995706|gb|ACA36318.1| response regulator [Streptococcus pneumoniae Hungary19A-6] Length = 199 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSVADLMQTLHTVLEGRKEY----SPELMEVVMTRPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS T+ Y+ + KLDA NR +A A G++ Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|256380943|ref|YP_003104603.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255925246|gb|ACU40757.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 234 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-----KRSSAARNLTERE 178 L G V T+E + ++ AH + L S R L+ RE Sbjct: 114 LAAGVRGLVPRTAEPAEVVEAILR-AHRERVHLDPTLAPLAAGFSPGADSGTRRALSRRE 172 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 LQL DG ++ +A+ L +SV TV ++ + KL A +R A++ A + G + Sbjct: 173 YEVLQLIADGLENQSVADALYVSVETVRTHVKNILRKLRARDRTHAVSLAYQAGLLS 229 >gi|94500934|ref|ZP_01307459.1| probable transcriptional regulator [Oceanobacter sp. RED65] gi|94426874|gb|EAT11857.1| probable transcriptional regulator [Oceanobacter sp. RED65] Length = 897 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 25/61 (40%), Positives = 39/61 (63%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + L+L +G +++EIAE+L +S+HTV + KLD +R QAI KA G Sbjct: 837 LSQREMAVLKLIAEGLSNQEIAERLFISLHTVKTHARRINGKLDVKSRTQAILKAKEVGI 896 Query: 234 I 234 + Sbjct: 897 L 897 >gi|294631223|ref|ZP_06709783.1| DNA-binding response regulator [Streptomyces sp. e14] gi|292834556|gb|EFF92905.1| DNA-binding response regulator [Streptomyces sp. e14] Length = 204 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + +++ + LA V G + + D + A LT+RE L+ A Sbjct: 99 AGADAFLVKDAPAAQLAAAVRKVLAG---ERVIDPTLAAAALAEGANPLTDREREVLRAA 155 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ E+A L LS TV YL +A KL NR +A+ A G++ Sbjct: 156 ADGSTNAELAAALHLSQGTVRNYLSTAIQKLAVRNRAEAVRTAREKGWL 204 >gi|289770298|ref|ZP_06529676.1| two-component system response regulator [Streptomyces lividans TK24] gi|289700497|gb|EFD67926.1| two-component system response regulator [Streptomyces lividans TK24] Length = 235 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKK---------- 166 L +G+++ + L + + A G +++ ++ Sbjct: 107 LRAGASGFLVKDALPEELLSGIRAVATGDAVVAPSLTRRLLDAYVHHLPAAGTRDHTPGS 166 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTERET L++ G G+T+ EIAE+L L+ TV ++G K + +R+QA+ Sbjct: 167 PDPRLSPLTERETEILRVMGQGWTNTEIAERLHLAESTVKTHVGRILAKTGSRDRVQAVI 226 Query: 227 KAIRFGYI 234 A + Sbjct: 227 LAYETKLV 234 >gi|289424205|ref|ZP_06425988.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289426652|ref|ZP_06428381.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295129970|ref|YP_003580633.1| putative Two-component system response regulator [Propionibacterium acnes SK137] gi|289154902|gb|EFD03584.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289160147|gb|EFD08322.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291375832|gb|ADD99686.1| putative Two-component system response regulator [Propionibacterium acnes SK137] gi|313765489|gb|EFS36853.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313772962|gb|EFS38928.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313793016|gb|EFS41083.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313802535|gb|EFS43757.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313806550|gb|EFS45057.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313811098|gb|EFS48812.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313814401|gb|EFS52115.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313815108|gb|EFS52822.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313817418|gb|EFS55132.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313821840|gb|EFS59554.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313824266|gb|EFS61980.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313826630|gb|EFS64344.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313828631|gb|EFS66345.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313831864|gb|EFS69578.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] gi|313834594|gb|EFS72308.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|314917145|gb|EFS80976.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314921419|gb|EFS85250.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926746|gb|EFS90577.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314931258|gb|EFS95089.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] gi|314954919|gb|EFS99325.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314958851|gb|EFT02953.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961142|gb|EFT05243.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964432|gb|EFT08532.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314969529|gb|EFT13627.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314974595|gb|EFT18690.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977213|gb|EFT21308.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314980470|gb|EFT24564.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|314985689|gb|EFT29781.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314987215|gb|EFT31306.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] gi|314988893|gb|EFT32984.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315078555|gb|EFT50586.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315082523|gb|EFT54499.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315086234|gb|EFT58210.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315087817|gb|EFT59793.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] gi|315097430|gb|EFT69406.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315099881|gb|EFT71857.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315101810|gb|EFT73786.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315110233|gb|EFT82209.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327331484|gb|EGE73223.1| DNA-binding response regulator [Propionibacterium acnes HL096PA2] gi|327333470|gb|EGE75190.1| DNA-binding response regulator [Propionibacterium acnes HL096PA3] gi|327445507|gb|EGE92161.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327447125|gb|EGE93779.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327449840|gb|EGE96494.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327454686|gb|EGF01341.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456761|gb|EGF03416.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|327456969|gb|EGF03624.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|328756522|gb|EGF70138.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328758750|gb|EGF72366.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328761756|gb|EGF75270.1| DNA-binding response regulator [Propionibacterium acnes HL099PA1] gi|332674812|gb|AEE71628.1| two-component system response regulator [Propionibacterium acnes 266] Length = 206 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G+++ + LA V+ + H + + L+ RE L+ Sbjct: 99 MDAGVAGFLVKDTPAEDLAQ-VVRKVHAGGRAIDPALAA--ESLIEGHNPLSGREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A R G++ Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206 >gi|171909746|ref|ZP_02925216.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 215 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 54/116 (46%), Gaps = 12/116 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARN--- 173 L GY++ + + ++ G QV++ F + ++A + Sbjct: 95 LKAGACGYLLKRTPPREIVAGIVQAHAGGSPMSPQVARQVVSFFHRVTDTATTAPPDPEM 154 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L ERE L L G+ +EIA++LG+S HTVN+++ KL +R QA+AK Sbjct: 155 SALAEREREVLDLLSKGFLYKEIADQLGISTHTVNSHIRRIYEKLHVRSRAQAVAK 210 >gi|170781406|ref|YP_001709738.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155974|emb|CAQ01108.1| putative two-component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 224 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 45/116 (38%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 +GY++ + + V A G ++ + + L+ RE Sbjct: 100 AGASGYLLKAAPEEEILAGVRAVARGEVALAPGIAAALVRQVARPAAEPAGPTPTLSPRE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T L L G T+ IA +L ++ TV +L KL +R +A+ A+ G + Sbjct: 160 TQVLALVAGGRTNARIALELHVTPATVKTHLLHVFEKLGVGDRTRAVTLAMELGLL 215 >gi|85702824|ref|ZP_01033928.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. 217] gi|85671752|gb|EAQ26609.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. 217] Length = 202 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 1/104 (0%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G++ T + L V G Y + DFLE + +LT RET L DG Sbjct: 99 GFLPKTLDPQSLVAAVHHMLLGETYTPL-DFLESGDTEAEGKVHLTPRETDVLVGVLDGK 157 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++EIA L + TV +L + + KL A NR QA A G Sbjct: 158 SNKEIARDLDIQEVTVKLHLKTLSRKLGAKNRTQAAMIARDMGL 201 >gi|284042697|ref|YP_003393037.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946918|gb|ADB49662.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 220 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKK-RSSAARNLT 175 L +GYV+ T+ L G + ++ D+LE LT Sbjct: 100 LKAGASGYVLKTAADRDLVEAARAAMRGESFLYPAAITALVRDYLERASAGEDVPEDPLT 159 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L + +T+++IA +L ++ TV + + KL +R++ AIR G + Sbjct: 160 PREREVLKLIAEAHTNDQIALELQIARRTVERHRANILAKLHMRDRVELTRYAIRRGLV 218 >gi|154244941|ref|YP_001415899.1| two component LuxR family transcriptional regulator [Xanthobacter autotrophicus Py2] gi|154159026|gb|ABS66242.1| two component transcriptional regulator, LuxR family [Xanthobacter autotrophicus Py2] Length = 210 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY----QVITDF--LELFKKRSSAARNLTER 177 L GYV ++ L + + G Y ++ D + + A +LT R Sbjct: 94 LALGALGYVPKSASRQTLLDAMEFVLKGHVYVPPFTLLPDAAPVATSEAAEEPAPHLTTR 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L+L G +++EI L LS TV ++ S L +NR QA + A + I Sbjct: 154 QLEVLKLLSRGLSNKEIGNTLDLSEKTVKVHITSIFRSLHVINRTQAASAARQGNLI 210 >gi|120555604|ref|YP_959955.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8] gi|120325453|gb|ABM19768.1| regulatory protein, LuxR [Marinobacter aquaeolei VT8] Length = 891 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + A +++RE L+L G +++EIA+KL +S+HTV + KLD +R Sbjct: 820 VAPAADPLAEPISDREQGVLELIAQGLSNQEIADKLHISLHTVKTHARRINAKLDVKSRT 879 Query: 223 QAIAKAIRFGYI 234 QAI +A G + Sbjct: 880 QAIVRARELGLL 891 >gi|320162423|ref|YP_004175648.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319996277|dbj|BAJ65048.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 220 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 8/114 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKK-RSSAARNLTER 177 +GYV+ ++ +L + + A G +++ E+ +K +A R+L+ER Sbjct: 98 AGASGYVLKQADNDVLLDAIQTVARGESLLDPATTTRLLHFVREMERKAEQNAFRDLSER 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E S L G T+ EI L LS TV ++ KL NR++ A+ Sbjct: 158 ELSVLAELAKGKTNAEIGRTLHLSEKTVRNHVSVILEKLHLSNRVELATYAVEH 211 >gi|298241309|ref|ZP_06965116.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554363|gb|EFH88227.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 220 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLEL------FKKRSSA 170 L GY++ + + + + G ++++ F L + A Sbjct: 96 LQAGARGYLLKGALKAEILRAIRGVSQGEAIFGPTIAKRLMSYFATLKPSAPLPAPPAQA 155 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L L T+ EI E+L LS TV ++ + KL R QAI +A Sbjct: 156 FPELTEREQEILALIAQHLTNSEITERLALSPKTVRNHVSNIFSKLQVATRAQAIIRARE 215 Query: 231 FGY 233 G+ Sbjct: 216 AGW 218 >gi|21222522|ref|NP_628301.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|256786408|ref|ZP_05524839.1| two-component system response regulator [Streptomyces lividans TK24] gi|8052435|emb|CAB92376.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 222 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKK---------- 166 L +G+++ + L + + A G +++ ++ Sbjct: 94 LRAGASGFLVKDALPEELLSGIRAVATGDAVVAPSLTRRLLDAYVHHLPAAGTRDHTPGS 153 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LTERET L++ G G+T+ EIAE+L L+ TV ++G K + +R+QA+ Sbjct: 154 PDPRLSPLTERETEILRVMGQGWTNTEIAERLHLAESTVKTHVGRILAKTGSRDRVQAVI 213 Query: 227 KAIRFGYI 234 A + Sbjct: 214 LAYETKLV 221 >gi|311896469|dbj|BAJ28877.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 170 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--------QVITDFLELFKKRSSAARNLT 175 L +G+++ S + V + A G + A LT Sbjct: 46 LRAGADGFLLKRSRPAEVVQAVRLAATGETLLFPAAIRRLAAARAGHAADGGAVARAGLT 105 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L G ++ EI +L L V TV ++ + KL A +R QA+ A G++ Sbjct: 106 GREGEVLRLMARGLSNAEIGAQLHLGVQTVKTHVSAVLGKLGARDRTQAVIAAYESGFVT 165 >gi|307327290|ref|ZP_07606477.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886969|gb|EFN17968.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 94.6 bits (234), Expect = 9e-18, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ L + A G A +IT+FL + A Sbjct: 97 LRAGASGFLGKDVTADTLLAGLRTVASGEALLSPAATRTLITNFLMSPAPDAHLAPPERL 156 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + LA +G ++ EIAE L LS TV ++ A KL A +R Q + A + Sbjct: 157 SELTGREREVMGLAAEGRSNTEIAEILTLSPLTVRTHIHRAMTKLGARDRAQLVVIAYQT 216 Query: 232 GY 233 G Sbjct: 217 GL 218 >gi|327472321|gb|EGF17752.1| DNA-binding response regulator [Streptococcus sanguinis SK408] Length = 199 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + ++ L+++E LQ A Sbjct: 95 ADVDAYVLKERSIADLMKTIHTVLDGQKEY----SPELMEVLMTSRNPLSQQERLVLQAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIAEKL LS TV Y+ + KL+A NR +A+ G++ Sbjct: 151 ATGLSNKEIAEKLYLSNGTVRNYMSAILTKLNAENRTEAVRIGQEKGWL 199 >gi|327468268|gb|EGF13753.1| DNA-binding response regulator [Streptococcus sanguinis SK330] Length = 199 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + ++ L+++E LQ A Sbjct: 95 ADVDAYVLKERSIADLMKTIHTVLAGQKEY----SPELMEVLMTSRNPLSQQERLVLQAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIAEKL LS TV Y+ + KLDA NR +A+ G++ Sbjct: 151 ATGLSNKEIAEKLYLSNGTVRNYMSAILTKLDAENRTEAVRIGQEKGWL 199 >gi|300782900|ref|YP_003763191.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792414|gb|ADJ42789.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 218 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L G+++ + + V + A G ++I ++ + LT Sbjct: 96 LRAGAAGFLVKDIQPEDFLHAVRVAARGDALLAPSITRKLIDRYVTQPLVPGAGLAELTN 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE + L G ++EEIA ++ +S T ++ A +KL A +R Q + A G + Sbjct: 156 REREAVSLVARGLSNEEIAGRMVISPLTAKTHVNRAMMKLHARDRAQLVVFAYESGLVA 214 >gi|239933574|ref|ZP_04690527.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291441947|ref|ZP_06581337.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291344842|gb|EFE71798.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 231 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ + L V A G A +I FL + ++A Sbjct: 97 LRAGASGFLGKGARPEELLGAVRTVAAGDALLSPSATRGLIRRFLAQPEPCTAAVHERLE 156 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++EEIAE+L +S T ++ A KL +R Q + A + G Sbjct: 157 CLTRRERDVLGLVALGLSNEEIAERLFVSPLTAKTHVNRAMTKLAVRDRAQLVVVAYQCG 216 Query: 233 YIC 235 + Sbjct: 217 VVS 219 >gi|238788099|ref|ZP_04631894.1| Two component transcriptional regulator, LuxR family [Yersinia frederiksenii ATCC 33641] gi|238723686|gb|EEQ15331.1| Two component transcriptional regulator, LuxR family [Yersinia frederiksenii ATCC 33641] Length = 194 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE +L + A G + +L ++ + LTERE L Sbjct: 83 DAGADGYLLKDSEPEILLENIRHAAKGEKVFSNEVAQYLSSRHEQVNPFAELTERELDVL 142 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 Q G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 143 QEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 184 >gi|317482273|ref|ZP_07941294.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316916289|gb|EFV37690.1| response regulator receiver domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 248 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 27/136 (19%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARN----- 173 +G+++ +E L N + A A ++I +E ++ R Sbjct: 113 AGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMATNVGRPENSAT 172 Query: 174 ---------------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LT+RE L G +++EIA+KL +S+ TV ++ K++A Sbjct: 173 TSATDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINA 232 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA+ A + Sbjct: 233 RDRVQAVVFAYENHLV 248 >gi|227497679|ref|ZP_03927892.1| response regulator [Actinomyces urogenitalis DSM 15434] gi|226832874|gb|EEH65257.1| response regulator [Actinomyces urogenitalis DSM 15434] Length = 211 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +G+++ + LA V G +VI L LTERE L+LAG Sbjct: 107 GASGFLVKDTPPAELAEAVRKVHAG--LRVIDPMLAQESVLL-GPNPLTEREREVLRLAG 163 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + IA L L TV YL SA K + NR++A A G++ Sbjct: 164 KGLDAPHIAAHLSLGEGTVRNYLSSAIAKTGSRNRVEAARTAESNGWL 211 >gi|68249325|ref|YP_248437.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 86-028NP] gi|145628395|ref|ZP_01784196.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 22.1-21] gi|145638479|ref|ZP_01794089.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittII] gi|68057524|gb|AAX87777.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 86-028NP] gi|144980170|gb|EDJ89829.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 22.1-21] gi|145272808|gb|EDK12715.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittII] gi|309751610|gb|ADO81594.1| nitrate/nitrite response regulator protein [Haemophilus influenzae R2866] gi|309973777|gb|ADO96978.1| nitrate/nitrite response regulator protein [Haemophilus influenzae R2846] Length = 208 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L +++ A G I + L + +LT+RE L Sbjct: 98 DAGADGYLLKDTEPDTLLDQIKRIAQGEVILSDSIKNLLLERTHEDNPLDSLTDREMGVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 158 RQIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|307327036|ref|ZP_07606226.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306887334|gb|EFN18330.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 229 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 47/125 (37%), Gaps = 14/125 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK-------KRSS 169 L G+++ L + G +++ F + + Sbjct: 95 LKAGAGGFMLKDVPPAELLAAIRAVHSGDAVVAPSTTRRLLDRFAPMLPGGGGSGGRVRP 154 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE + L G ++ EIA +L LS TV ++G KL+ +R+Q + A Sbjct: 155 ELERLTDREREVVLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLELRDRVQVVVMAY 214 Query: 230 RFGYI 234 G + Sbjct: 215 ETGLV 219 >gi|85711562|ref|ZP_01042620.1| two-component system regulatory protein [Idiomarina baltica OS145] gi|85694714|gb|EAQ32654.1| two-component system regulatory protein [Idiomarina baltica OS145] Length = 212 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 8/118 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA-RNLTE 176 GY++ L + + G + +++ K + LT+ Sbjct: 95 AAGAKGYLLKDVSLETLVDAIRALVDGGTWLQPAITERIVNSLTHNTNKTAPVLIEPLTD 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +E + L+L G +++EIA+ L S T+ + S KL +R +A+ KAI G + Sbjct: 155 KELAVLRLMAAGLSNQEIADSLFKSTGTIKNQVSSIMAKLGVHDRTRAVLKAIDLGVL 212 >gi|152968206|ref|YP_001363990.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151362723|gb|ABS05726.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 230 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLE-----LFKKRSSAA 171 L G+++ + L V I A G +++ + ++ + Sbjct: 106 LQAGATGFLLKDTPPRELVAAVRIVAAGEAMLSPTVTRRLVGHYAADAVNPRRREAAERL 165 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L G G ++ E+ ++L +S TV ++ KL A NR+Q A Sbjct: 166 TTLTEREREVLACVGRGMSNAEVGKELFMSEATVKTHVSRLLTKLQAHNRVQVAIVAHDA 225 Query: 232 GYI 234 G + Sbjct: 226 GLL 228 >gi|332974494|gb|EGK11416.1| DNA-binding response regulator [Desmospora sp. 8437] Length = 224 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 5/119 (4%) Query: 119 AFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSS-AARNL 174 FP L Y++ T+ + + G +V L+ +K +L Sbjct: 91 VFPA-LEAGAFSYLLKTARAEEITAAIRSAHRGESTLEPKVSARLLKRVRKPQPLPHEDL 149 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+L G T+++IA+ L + + TV ++ + KL +R QA A++ G Sbjct: 150 TIREGEVLRLLGQAKTNQQIADILMIGIKTVKTHVSNILSKLGLEDRTQAAVYAVKHGL 208 >gi|326329284|ref|ZP_08195609.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] gi|325952859|gb|EGD44874.1| putative two-component system response regulator [Nocardioidaceae bacterium Broad-1] Length = 231 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK-------RSSAARN 173 L G+++ S L V A G + + L ++ R+ Sbjct: 107 LRAGAAGFILKDSPAEELVMAVRSVALGDAWLDPAITGRVLATYRSAVAPPASRAVEVSE 166 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+ G+T+ EIAE+L +S TV +++G KLD +R AI A G Sbjct: 167 LTDRELEVLRGLASGWTNSEIAERLVISELTVKSHIGRIFAKLDLRDRAAAIVFAYDHGI 226 Query: 234 I 234 + Sbjct: 227 V 227 >gi|254780694|ref|YP_003065107.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter asiaticus str. psy62] gi|254040371|gb|ACT57167.1| probable transcriptional regulator protein, LuxR family [Candidatus Liberibacter asiaticus str. psy62] Length = 246 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 2/104 (1%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 ++F ++L + + A YQ + + + LT RE CL +G T Sbjct: 145 MLLFPKGRIILRDRLWEIGLLAAYQA--NMFKSYDVHWGKDFELTGREVECLTWISEGKT 202 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S+EIA LG+S +TVN Y+ S K R AIA A+R + Sbjct: 203 SDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNIV 246 >gi|307154251|ref|YP_003889635.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306984479|gb|ADN16360.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 231 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 9/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------LTER 177 GY+ + L + + Y +V T F F S N LT R Sbjct: 107 GAKGYIFKMNIVQQLGEAINTVMNDKVYFPPEVATQFFHYFNTCSEPLVNAEKKIDLTRR 166 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E LQ G ++E+IA++L ++V TV A+L + KL NR QAI A++ Sbjct: 167 EKEVLQYLIKGLSNEQIAQQLYITVATVKAHLTAIFNKLGVKNRTQAIVAAMK 219 >gi|291300074|ref|YP_003511352.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569294|gb|ADD42259.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 213 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSA-ARNLTERETSC 181 GY++ + L V A G V ++ + A + L+ RE Sbjct: 97 AGAVGYLLKDTPRQDLYRAVRSAADGETALSPSVAARLVDRLRSPGPARSSALSAREIEV 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G +++ IA L +S TV +L KL +R A+A G + Sbjct: 157 LSLVAAGNSNKAIAAALFISEATVKTHLLHIYGKLGVNDRAAAVAAGYDSGLL 209 >gi|187922148|ref|YP_001893790.1| LuxR family transcriptional regulator [Burkholderia phytofirmans PsJN] gi|187713342|gb|ACD14566.1| transcriptional regulator, LuxR family [Burkholderia phytofirmans PsJN] Length = 206 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 12/180 (6%) Query: 64 IPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 P ++ Y D P W I + + + + Sbjct: 28 YPREWVQYYEGRDYAATDPVHRAAFIQSTPYRWHDI---AGLSKAERRLLDEAKEAGLPG 84 Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVI-IEAHGACYQVITDFLELFK-KRSSAARNL 174 G++ PV + + + + A Q + L R A+R L Sbjct: 85 GLSIPVHQADGSVVLFNLSGPLHSVNDAIKSRIACLISTQFHCELHRLSPISRCRASRLL 144 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T + CL G TS EIA+ LG S +TV+ ++G A L+ +R A A G I Sbjct: 145 TPCQIVCLTWVARGKTSAEIAKILGRSHYTVDYHIGKAMQALNMCSRTAAAVYASVQGII 204 >gi|300790735|ref|YP_003771026.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800249|gb|ADJ50624.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 221 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDF---LELFKKRSSAARN 173 L +G+++ + L + + A G +++ F LE Sbjct: 95 LRAGASGFLLKSLAPEELVAAMRVAARGDALIDPSVTRRLVAKFATVLEPAAAEPPELAR 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L ++ EIA KL + TV ++ KL +R+ A+ A R Sbjct: 155 LTSREREVLLLLAGACSNAEIARKLHVGEETVKTHVSRVLSKLGLPDRVHAVVYAYRHKL 214 Query: 234 I 234 + Sbjct: 215 V 215 >gi|298247238|ref|ZP_06971043.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297549897|gb|EFH83763.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 939 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 38/72 (52%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + L+ RE L+L G ++++IAE L ++ TV ++ + KL+A NR Q Sbjct: 863 SRLPQPLLDPLSAREQEVLRLLARGASNQDIAEALVVATSTVKHHISNILSKLEATNRTQ 922 Query: 224 AIAKAIRFGYIC 235 A+A+A G + Sbjct: 923 AVARARALGLLS 934 >gi|149203886|ref|ZP_01880855.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] gi|149143003|gb|EDM31045.1| two component transcriptional regulator, LuxR family protein [Roseovarius sp. TM1035] Length = 202 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 1/110 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ T + L V G Y + DFLE + + LT RET L Sbjct: 93 LRSGAAGFLPKTLDPQSLVAAVHHMLLGETYTPL-DFLETGESEAEGPVRLTPRETDVLV 151 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G +++EIA L + TV +L + + KL A NR A A G Sbjct: 152 GILHGKSNKEIARDLDIQEVTVKLHLKTLSRKLGAKNRTHAAMIARDMGL 201 >gi|134103671|ref|YP_001109332.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004794|ref|ZP_06562767.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916294|emb|CAM06407.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 220 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L +G+++ + +L + G +++ F + ++ SA Sbjct: 96 LANGASGFLLKDAGPALLIEAIQAAVRGDALVSPQITVRLLKHFSQSRERVRSAVAPPKE 155 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE ++ G T+ EI +L +S+ TV +L +A K+ A NR++ A A R G Sbjct: 156 ELTERELQVVRATAKGLTNTEIGRELFMSLSTVKTHLAAAQAKIGARNRVETAAWAWRSG 215 Query: 233 Y 233 Sbjct: 216 L 216 >gi|82544573|ref|YP_408520.1| transcriptional regulator NarP [Shigella boydii Sb227] gi|81245984|gb|ABB66692.1| nitrate/nitrite response regulator [Shigella boydii Sb227] gi|320185869|gb|EFW60619.1| Nitrate/nitrite response regulator protein [Shigella flexneri CDC 796-83] gi|332093584|gb|EGI98642.1| response regulator [Shigella boydii 3594-74] Length = 215 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|255263647|ref|ZP_05342989.1| positive regulator AgmR [Thalassiobium sp. R2A62] gi|255105982|gb|EET48656.1| positive regulator AgmR [Thalassiobium sp. R2A62] Length = 204 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 1/105 (0%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDG 188 G+V + L N V A G Y + + + A+NLT+RE L+ G Sbjct: 99 GFVPKSLPAKSLVNAVKFMAMGEQYAPLDFMTAEEEPETHELAKNLTQRELQVLEGLTQG 158 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +++EIA L + TV ++ + KL+A NR QA A G Sbjct: 159 KSNKEIARDLEIQEPTVKLHMKTLYRKLEASNRTQAALIAREAGL 203 >gi|258650899|ref|YP_003200055.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554124|gb|ACV77066.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 241 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 19/130 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLE---------LFKKRSSAA 171 L +G+++ + L + + + A G ++ L+ L R Sbjct: 95 LRGGASGFLLKDAPVAELVHAIRVIAQGHALVAPRITRLLLDAYAPQLPDPLAGDRPGPD 154 Query: 172 R-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 R +LT RE L L G ++ EIA L +S TV +++G+ KLD NR+ A Sbjct: 155 RAVVGPGGSLTGREHEVLLLLARGRSNAEIATDLVVSEVTVKSHVGAVLHKLDLRNRVAA 214 Query: 225 IAKAIRFGYI 234 + A G I Sbjct: 215 VIYAYEHGLI 224 >gi|302552511|ref|ZP_07304853.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470129|gb|EFL33222.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 203 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I H V + ++ LT RE L+ Sbjct: 96 LEAGVRGFVPKTVSAQRLA-EIIRTVHAGNRYVDPELAA--DAIAAGDSPLTVREAEVLE 152 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG EIAE+ LS TV YL SA KL A NR A+ A G++ Sbjct: 153 LAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGAENRHAAVRLARERGWV 203 >gi|271965002|ref|YP_003339198.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270508177|gb|ACZ86455.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 220 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 +GY+ LA V A G ++ ++ +R++A LT RE Sbjct: 98 AGASGYLTKDVRPAALAQAVCDVASGTSALTPGVAATILDLVRQVPIRRTAALDGLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EI +L LS +TV +++ + KLD +R+ A+ A G + Sbjct: 158 VEIFGLLARGRSNSEICAELVLSENTVKSHVRAVLQKLDLRDRVHAVIHAYENGLV 213 >gi|319441809|ref|ZP_07990965.1| putative NarL family two-component response regulator [Corynebacterium variabile DSM 44702] Length = 228 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 50/129 (38%), Gaps = 20/129 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELF------------ 164 L +G+++ + L V + G ++I D + Sbjct: 98 LQMGCSGFLLKDAPAGELVRAVRLAVTGEALLAPSVTKRLIEDAVAKRPAGRIRGGESAG 157 Query: 165 -KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 + A R+LT RE L+ G +++EIA L +S TV ++ KL +R+Q Sbjct: 158 EQAALKALRSLTPREHEILEQIATGRSNQEIAGTLFISEETVKTHVRKVLQKLSLRDRVQ 217 Query: 224 AIAKAIRFG 232 A+ A G Sbjct: 218 AVVFAYENG 226 >gi|307325965|ref|ZP_07605164.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306888457|gb|EFN19444.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 259 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 35/112 (31%), Positives = 46/112 (41%), Gaps = 7/112 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSAARNLTERE 178 GYV+ L + V A GA +V+ NL+ RE Sbjct: 140 AGAAGYVLKQINGSDLVSAVRTVAGGRSMLDPGATARVMARLRGPAPSGPVELENLSPRE 199 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LQL GDG T+ +IAE+L L+ TV + + KL RIQA A R Sbjct: 200 REILQLIGDGLTNRQIAERLFLAEKTVKNRISAILSKLGVGRRIQAAVIAER 251 >gi|166366585|ref|YP_001658858.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166088958|dbj|BAG03666.1| two component transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 237 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 46/112 (41%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 G H I + V + A VI ++ + LT RE L Sbjct: 125 HEGNHWLDPAIANIVLQQVRQNVPVGAAAGTKTVIIQGVDREYHQLLENAPLTAREREIL 184 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIA++L +++ TV ++ + KL +R QA A+R G + Sbjct: 185 DLIVAGCSNAEIAKRLYITIGTVKTHVRNVLNKLSVDDRTQAAVLALRSGLV 236 >gi|16130130|ref|NP_416697.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K-12 substr. MG1655] gi|89109009|ref|AP_002789.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K-12 substr. W3110] gi|170081813|ref|YP_001731133.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K-12 substr. DH10B] gi|238901367|ref|YP_002927163.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli BW2952] gi|400374|sp|P31802|NARP_ECOLI RecName: Full=Nitrate/nitrite response regulator protein narP gi|304917|gb|AAA24200.1| nitrate/nitrite response regulator [Escherichia coli] gi|1788521|gb|AAC75253.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K-12 substr. MG1655] gi|85675300|dbj|BAE76656.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K12 substr. W3110] gi|169889648|gb|ACB03355.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli str. K-12 substr. DH10B] gi|238860866|gb|ACR62864.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli BW2952] gi|260448714|gb|ACX39136.1| two component transcriptional regulator, LuxR family [Escherichia coli DH1] gi|315136825|dbj|BAJ43984.1| transcriptional regulator NarP [Escherichia coli DH1] Length = 215 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|110642402|ref|YP_670132.1| transcriptional regulator NarP [Escherichia coli 536] gi|191170199|ref|ZP_03031753.1| nitrate/nitrite response regulator NarP [Escherichia coli F11] gi|215487411|ref|YP_002329842.1| transcriptional regulator NarP [Escherichia coli O127:H6 str. E2348/69] gi|218559110|ref|YP_002392023.1| transcriptional regulator NarP [Escherichia coli S88] gi|218690355|ref|YP_002398567.1| transcriptional regulator NarP [Escherichia coli ED1a] gi|306814694|ref|ZP_07448856.1| transcriptional regulator NarP [Escherichia coli NC101] gi|312967493|ref|ZP_07781708.1| response regulator [Escherichia coli 2362-75] gi|331658272|ref|ZP_08359234.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA206] gi|110343994|gb|ABG70231.1| nitrate/nitrite response regulator protein NarP [Escherichia coli 536] gi|190909715|gb|EDV69300.1| nitrate/nitrite response regulator NarP [Escherichia coli F11] gi|215265483|emb|CAS09885.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli O127:H6 str. E2348/69] gi|218365879|emb|CAR03621.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli S88] gi|218427919|emb|CAR08839.2| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia coli ED1a] gi|281179284|dbj|BAI55614.1| nitrate/nitrite response regulator [Escherichia coli SE15] gi|294492603|gb|ADE91359.1| DNA-binding response regulator, LuxR family [Escherichia coli IHE3034] gi|305852088|gb|EFM52540.1| transcriptional regulator NarP [Escherichia coli NC101] gi|307554259|gb|ADN47034.1| nitrate/nitrite response regulator protein NarP [Escherichia coli ABU 83972] gi|307626269|gb|ADN70573.1| transcriptional regulator NarP [Escherichia coli UM146] gi|312287690|gb|EFR15595.1| response regulator [Escherichia coli 2362-75] gi|312946814|gb|ADR27641.1| transcriptional regulator NarP [Escherichia coli O83:H1 str. NRG 857C] gi|320196066|gb|EFW70690.1| Nitrate/nitrite response regulator protein [Escherichia coli WV_060327] gi|323188081|gb|EFZ73376.1| response regulator [Escherichia coli RN587/1] gi|323951986|gb|EGB47860.1| response regulator receiver domain-containing protein [Escherichia coli H252] gi|323955960|gb|EGB51713.1| response regulator receiver domain-containing protein [Escherichia coli H263] gi|330912024|gb|EGH40534.1| nitrate/nitrite response regulator protein [Escherichia coli AA86] gi|331056520|gb|EGI28529.1| nitrate/nitrite response regulator protein NarP [Escherichia coli TA206] Length = 215 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|197285412|ref|YP_002151284.1| nitrate/nitrite response regulator [Proteus mirabilis HI4320] gi|194682899|emb|CAR43257.1| nitrate/nitrite response regulator [Proteus mirabilis HI4320] Length = 207 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 2/103 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLELFKKRSSAARNLTERETSC 181 L NGY++ E ML + G + + +++L + S LT+RE Sbjct: 96 LDAGANGYLLKECELDMLLLSLRKAVVGRPVYSEKVWQYIQLRQNYSDPLSALTKRELDV 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LQ G +++IAE L +S TV ++ + KL +R+ A Sbjct: 156 LQEVAVGMKNKQIAENLFISEETVKVHIRNILKKLQVTSRLAA 198 >gi|311899923|dbj|BAJ32331.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 243 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 10/119 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNL---TE 176 +G+++ L + + A G ++I +F + AR L T Sbjct: 103 GASGFLLKDILPADLLTALRVVAAGDALLAPAVTRRLIGEFAGRHEPPPRLARELAGLTP 162 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L G + +A+ L LSV TV ++ KL A +R Q + A G + Sbjct: 163 REREVLRLVARGLPNPAVADHLELSVATVKTHVRRLLAKLHAHDRAQLVVIAYETGLVT 221 >gi|328883517|emb|CCA56756.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 219 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L +G++ E L V I A G +VI F + ++A LT Sbjct: 95 LRAGASGFLTKEVEPAELRRAVEIVAAGDSLLSPGVTRRVIERFAH-RPRPAAALHALTA 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE ++L +G +++EIA L +S T ++ A KL +R+Q + A G + Sbjct: 154 RENEVVRLVAEGRSNDEIAAALVISPLTAKTHISRAITKLGLRDRVQLVITAYEHGLVS 212 >gi|312194246|ref|YP_004014307.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311225582|gb|ADP78437.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 245 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 50/140 (35%), Gaps = 29/140 (20%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 L +G+++ L + A G +++ F ++A Sbjct: 95 LRAGASGFLLKDVPPADLLTAIRTVAAGDAVVAPNVTRRLLDAFAHHLPDPDASADGGPD 154 Query: 173 ------------------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 LT+RE L G ++ EIA +L LS TV ++G Sbjct: 155 RPAGRVANRRTAGTDRLDRLTDRERDVLGEVAAGLSNAEIAARLVLSEATVKTHVGRILA 214 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL+ +R+QA+ A G I Sbjct: 215 KLELRDRVQAVVFAYETGLI 234 >gi|195977721|ref|YP_002122965.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225868974|ref|YP_002744922.1| response regulatory protein [Streptococcus equi subsp. zooepidemicus] gi|195974426|gb|ACG61952.1| TCS response regulator [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225702250|emb|CAX00006.1| response regulatory protein [Streptococcus equi subsp. zooepidemicus] Length = 198 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 46/109 (42%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + L+++E + L L Sbjct: 94 AGADAYVLKDRSISELMTTIKTVLSGGKEY----SPELMENIVVNPNPLSKQEMNILYLI 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS+EI++ L LS T+ Y+ S K NR++AI+ A G++ Sbjct: 150 AQGKTSKEISQILFLSNGTIRNYISSIFNKFGVSNRMEAISLAKENGWL 198 >gi|219850206|ref|YP_002464639.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544465|gb|ACL26203.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 219 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTER 177 L N Y++ ++ L + + G + + D L + LT R Sbjct: 97 LRAGANAYLLKDADASELIEAIHVVYRGEAALAGSAAARVLDLLRRNDNAPALHEVLTPR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L L G + IA KL L+ TV L KL NR QA A++ G + Sbjct: 157 ERDILALVAQGDDNRAIALKLSLAEKTVGNRLSEIFQKLGVSNRTQAAIVAVQRGLV 213 >gi|27382386|ref|NP_773915.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] gi|27355557|dbj|BAC52540.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 123 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 30/80 (37%), Positives = 42/80 (52%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 Q + + LT+RE L L +G +++ IA +LG+SVHTV ++GS Sbjct: 42 QAAATIVARDPRSMPEDIALTQRELDVLALMAEGASNKMIARQLGISVHTVKFHVGSLLD 101 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KLDA R A+A A R G I Sbjct: 102 KLDATGRTDAVAHAARRGVI 121 >gi|333028632|ref|ZP_08456696.1| putative LuxR family DNA-binding response regulator [Streptomyces sp. Tu6071] gi|332748484|gb|EGJ78925.1| putative LuxR family DNA-binding response regulator [Streptomyces sp. Tu6071] Length = 212 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAA--RNL 174 L GYV+ + L GA +I ++L+ ++ A L Sbjct: 91 LKAGAGGYVLKSLADRDLIEACRAAMRDEPFLYPGATGALIRNYLDQARRGEEPAGGSTL 150 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L +G++S++IA L +SV TV + + KL +R++ AIR G + Sbjct: 151 TPREEEILKLVAEGHSSKDIAALLVISVKTVERHRANTLHKLGLKDRLELTRYAIRAGLV 210 >gi|326442335|ref|ZP_08217069.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 203 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I H V + S+ LT RE L Sbjct: 96 LEAGVRGFVPKTLSAQRLA-EIIRAVHAGSRYVDPELAA--DAISAGDSPLTAREAEVLA 152 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG EIAE+ LS TV YL SA KL A NR A+ A G++ Sbjct: 153 LAADGAPIAEIAERASLSQGTVRNYLSSAVSKLGAENRHTAVRLARHRGWV 203 >gi|168487139|ref|ZP_02711647.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|194398168|ref|YP_002038583.1| response regulator [Streptococcus pneumoniae G54] gi|225861819|ref|YP_002743328.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|298230314|ref|ZP_06963995.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255058|ref|ZP_06978644.1| response regulator [Streptococcus pneumoniae str. Canada MDR_19A] gi|298503771|ref|YP_003725711.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|183569979|gb|EDT90507.1| response regulator [Streptococcus pneumoniae CDC1087-00] gi|194357835|gb|ACF56283.1| response regulator TCS11 [Streptococcus pneumoniae G54] gi|225728123|gb|ACO23974.1| response regulator [Streptococcus pneumoniae Taiwan19F-14] gi|298239366|gb|ADI70497.1| response regulator [Streptococcus pneumoniae TCH8431/19A] gi|327389165|gb|EGE87511.1| response regulator [Streptococcus pneumoniae GA04375] Length = 199 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSVADLMQTLHTVLEGRKEY----SPELMEVVMTRPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS T+ Y+ + KLDA NR +A A G++ Sbjct: 151 ARGLSNQEIADQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|329941026|ref|ZP_08290306.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329300320|gb|EGG44218.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 227 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 15/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLE--------LFKKRS 168 L +G++ SE L N + + A G +I FL + + Sbjct: 97 LRAGASGFLGKGSEPEELLNAIRVAAGGEALLSPAATKGLIARFLAQGDADEDGRDRVHA 156 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G++++EIAE+L +S TV ++ A KL A +R Q + A Sbjct: 157 ERLAALTGREREVLVQVAGGHSNDEIAERLEVSPLTVKTHVNRAMSKLGARDRAQLVFIA 216 Query: 229 IRFGYI 234 G + Sbjct: 217 YESGLV 222 >gi|254393534|ref|ZP_05008669.1| luxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] gi|294811039|ref|ZP_06769682.1| LuxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] gi|326439619|ref|ZP_08214353.1| luxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] gi|197707156|gb|EDY52968.1| luxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] gi|294323638|gb|EFG05281.1| LuxR family two-component response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NLTE 176 +GYV+ + L V A G +++ A R LTE Sbjct: 107 AGASGYVLKQIKGSDLVAAVRTVASGQSMLDPATTARLMNSLRAPRTPDPEADRLGGLTE 166 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+L G+G T+ +I +L L+ TV ++ KL RIQA A +F Sbjct: 167 REREILELIGEGLTNRQIGARLYLAEKTVKNHISRLLAKLGVERRIQAAVLATQFRL 223 >gi|256395654|ref|YP_003117218.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361880|gb|ACU75377.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 224 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA----- 171 L +G+++ S LA + A G +++ + + F S Sbjct: 96 LRAGASGFLLKNSRPDDLAAAIRAVAAGDAVIAPSTTRRLLDAYADRFTAPSDPPAGASD 155 Query: 172 -----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +LT RE G T++EIA++L LS TV ++ KL +R+QA+ Sbjct: 156 PSAPLESLTRREREVFDQMVSGLTNKEIAQQLALSETTVKTHVVRILAKLAVRDRVQAVI 215 Query: 227 KAIRFGYI 234 A GYI Sbjct: 216 YAYETGYI 223 >gi|297191286|ref|ZP_06908684.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197718427|gb|EDY62335.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 218 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 49/121 (40%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------L 174 L GY++ + V + A G V + F R + A + Sbjct: 95 LRAGAAGYLVKDMALDDILAAVRVVAAGDGLISPAVTRRLIREFAGRPAGAGPKRELAGI 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE L L G G ++ EIAE L +SV T Y+ KL A +R++ + A G + Sbjct: 155 TDREREVLTLVGSGLSNSEIAEALFISVATAKTYVTRLLSKLGARDRVRLVIIAYETGLV 214 Query: 235 C 235 Sbjct: 215 S 215 >gi|116250468|ref|YP_766306.1| GerE/LuxR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] gi|115255116|emb|CAK06190.1| regulator of flagellar and motility genes, also regulates rem [Rhizobium leguminosarum bv. viciae 3841] Length = 262 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 50/229 (21%), Positives = 84/229 (36%), Gaps = 24/229 (10%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTIN----SALDFPRRQQLICELHNYDLDSGDIPN 66 +S L L + + + A ++ L + S LDF ++ +DL DI N Sbjct: 53 VASTGRLQSGLRALTDYVGASHYLLARCDLLQESGLDF-----IVSSDWPFDLVR-DIAN 106 Query: 67 ILIETYGDDF-LFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLG 125 L+ Y L P + + + + + ++ Sbjct: 107 DLVRGYARSTELEKCMQVFQPNF-ALLPDSAEVPDGASRQYCSVTFNVGRSRLSL----- 160 Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +F F++ + A Y + FL + LT+RE CL Sbjct: 161 -----MFLFGEGFILSPERLRDVGLLAGY--VASFLRCGGTKVDRDFELTDRELECLFWI 213 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 214 AEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 262 >gi|301305257|ref|ZP_07211354.1| autoinducer binding domain protein [Escherichia coli MS 124-1] gi|300839463|gb|EFK67223.1| autoinducer binding domain protein [Escherichia coli MS 124-1] Length = 226 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 66/192 (34%), Gaps = 10/192 (5%) Query: 33 FALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSI 92 + Y++ P + + NY D L N ++W Sbjct: 39 YDYYSLCVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDD 98 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS----EFLMLANEVIIE 148 + S Q G+ + L G++ F+ E +L++E+ ++ Sbjct: 99 -----LFSEAQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRSSAREIPILSDELQLK 153 Query: 149 AHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + + L + N ++RE L+ +G TS EIA L +S +TVN Sbjct: 154 MQLLVRESLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNF 213 Query: 208 YLGSATVKLDAV 219 + + K+ Sbjct: 214 HQKNMQKKIKCT 225 >gi|289522810|ref|ZP_06439664.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503834|gb|EFD24998.1| DNA-binding response regulator, LuxR family [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 222 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN-LT 175 L GY++ + + Y V+ D+L L + AA N L+ Sbjct: 98 LEAGARGYILKDCSIDEFVQGIKAVSQDLVYLTPKAAKIVLEDYLLLKRGDVLAAENKLS 157 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G ++ IA KL +S TV+ + + KL+ N AIR G + Sbjct: 158 PREMEVLRLLVKGEHTKSIASKLSISKSTVDTHRKNIMEKLNCANIADLTRYAIREGLV 216 >gi|114320822|ref|YP_742505.1| two component LuxR family transcriptional regulator [Alkalilimnicola ehrlichii MLHE-1] gi|114227216|gb|ABI57015.1| two component transcriptional regulator, LuxR family [Alkalilimnicola ehrlichii MLHE-1] Length = 221 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 15/125 (12%) Query: 124 LGFHKNGYVIFTSEFLMLAN---EVIIEAHGACYQVITDFLELF------------KKRS 168 L NGY++ +E L +V+ ++ +++ + Sbjct: 91 LQAGANGYLVKDAEPAELIQGLEKVLAGQTAVASRLTDTLVQMMAGGRSQREGAEASRPP 150 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L +++ IA +LG+S TV ++ S KL +R++A KA Sbjct: 151 DPFAALTPREREILMHVARAESNKVIARELGVSDGTVKLHIKSILRKLGVKSRVEAAVKA 210 Query: 229 IRFGY 233 + G Sbjct: 211 VDLGL 215 >gi|189439534|ref|YP_001954615.1| putative response regulator [Bifidobacterium longum DJO10A] gi|189427969|gb|ACD98117.1| Putative response regulator [Bifidobacterium longum DJO10A] Length = 248 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 27/136 (19%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARN----- 173 +G+++ +E L N + A A ++I +E ++ R Sbjct: 113 AGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMATNVGRPENSAT 172 Query: 174 ---------------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LT+RE L G +++EIA+KL +S+ TV ++ K++A Sbjct: 173 TSATDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINA 232 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA+ A + Sbjct: 233 RDRVQAVVFAYENHLV 248 >gi|170723583|ref|YP_001751271.1| ATP-dependent transcriptional regulator LuxR [Pseudomonas putida W619] gi|169761586|gb|ACA74902.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pseudomonas putida W619] Length = 905 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 44/87 (50%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 A +++ EL S +L+ RE + L+L G ++++I+E+L +S+HTV + Sbjct: 819 ACKVQVELLARLPELAAPGSGTCESLSGRELAVLELIAQGCSNQQISERLFISLHTVKTH 878 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYIC 235 KL R QA+A+A G + Sbjct: 879 ASHINSKLGVERRTQAVARAKSLGLLA 905 >gi|134298790|ref|YP_001112286.1| response regulator receiver protein [Desulfotomaculum reducens MI-1] gi|134051490|gb|ABO49461.1| response regulator receiver protein [Desulfotomaculum reducens MI-1] Length = 119 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 6/95 (6%) Query: 141 LANEVIIEAHGACYQVI------TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 +VI EA Y++I E K+R+S LT RE L+L G +++ I Sbjct: 20 FCKKVIEEALSQGYRLIVIDSKVEYVKENGKERTSNVNQLTNREFELLKLIAKGISNKAI 79 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A++L +S TV +L S KL NR +A A+ Sbjct: 80 AKQLFISEKTVKNHLTSIYSKLGVTNRTEATLYAV 114 >gi|317495606|ref|ZP_07953974.1| response regulator receiver domain-containing protein [Gemella moribillum M424] gi|316914420|gb|EFV35898.1| response regulator receiver domain-containing protein [Gemella moribillum M424] Length = 199 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 4/108 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + YV+ L N + G EL + L+++ET L+ Sbjct: 96 NVDAYVLKDRSIEELMNTIENILAGHKEY----SPELMENIFMNHNPLSKQETLLLKKVK 151 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA +L LS T Y+ + KLD NR +A+ KA G+I Sbjct: 152 HGLSNKEIAAELFLSEGTTRNYISNILTKLDCKNRTEAVKKATEKGWI 199 >gi|311894358|dbj|BAJ26766.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 226 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 44/112 (39%), Gaps = 7/112 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 GYV+ L + A G A +++ + LT+RE Sbjct: 102 AGAAGYVLKQISGTDLVTAIRTVASGQSMLDPGAATRLMARMRGESPAPAPEFPQLTDRE 161 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L L G+G T+ +I E++ L+ TV ++ KL R+QA A + Sbjct: 162 REILALIGEGLTNRQIGERVYLAEKTVKNHISRLLAKLGVERRVQAAVIATQ 213 >gi|257067250|ref|YP_003153505.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] gi|256558068|gb|ACU83915.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Brachybacterium faecium DSM 4810] Length = 213 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 44/111 (39%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GYV+ S L V A G L + +S A L+ RE L+ Sbjct: 102 LEAGATGYVLKDSPTEALIAAVGEAAAGRSVLSPEVQQRLVARMTSPATALSPREAEILE 161 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ E+A++L +S TV +L KL +R A+ A I Sbjct: 162 ALATGATNREVAKRLFISESTVKTHLVHLYEKLGVDSRTAALRVARERRLI 212 >gi|238061007|ref|ZP_04605716.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882818|gb|EEP71646.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 231 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA------RNLTE 176 GYV T LA + A G ++ L+ F R A LT Sbjct: 114 AGARGYVTKTISPDELAAAIRRVADGDAVFSPRLAGFVLDAFAARPDAPVADPELDQLTN 173 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L GY +EIA++L +S+ TV ++ + KL NR + A + Sbjct: 174 REREVLRLLARGYAYKEIAKELYISIKTVETHVSNVLRKLQMSNRYELSRWAADRRLV 231 >gi|297562533|ref|YP_003681507.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846981|gb|ADH69001.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 222 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 50/122 (40%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARNL-- 174 L +G+++ +E L V + + G ++I D+ + L Sbjct: 96 LRAGASGFLVKDTEPGDLLRAVRVVHGGEALLSPGITRRLIADYARRPPSAPDPSVRLNG 155 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE + L G G ++EEIA L LS T ++ A VKL +R Q + A Sbjct: 156 LTEREREVVALVGGGLSNEEIAAHLVLSPATAKTHVSRAMVKLGVRDRAQLVVIAYETAL 215 Query: 234 IC 235 + Sbjct: 216 VT 217 >gi|2367439|gb|AAB69646.1| LuxR homolog [Pectobacterium betavasculorum] Length = 242 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 69/195 (35%), Gaps = 26/195 (13%) Query: 62 GDIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSGQLS--VRLEGGL 112 P+ ++ Y ++ H + +L P W ++ VI + QL+ L Sbjct: 48 SSYPDEWVDLYKENKYQHIDPVVLASFNKISPFSW---EKSLVINTRLQLAKIFDLSKKY 104 Query: 113 LPFAGIAFPVRLGFHKNGYVI-------------FTSEFLMLANEVIIEAHGACYQVITD 159 G F + + F E ++IEA+ + + Sbjct: 105 NIINGYTFVLHDHGDNLAMLSIIVDSSYPDDVEKFIEEKKDTFQMLLIEAYEEIISLCRE 164 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +E KK+ ++RE L A G T E+A LG+ TV ++G+ KL + Sbjct: 165 MIE-SKKQLHNKDIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVL 223 Query: 220 NRIQAIAKAIRFGYI 234 N AI + I Sbjct: 224 NAKHAIRLGVELQLI 238 >gi|320106955|ref|YP_004182545.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319925476|gb|ADV82551.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 208 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ L + + G + I + +A L+ERE L+ Sbjct: 98 LKLGAVGYLLKGMLRTELVDTIRRVYAGQRH--IPPQIASEIANHYSADALSEREIQVLR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++ +A+KL +S TV ++ S KL A +R A+ A++ G+I Sbjct: 156 EVSAGSSNKSVADKLFISEDTVKGHMKSILAKLQANDRTHAVMIAVKRGFI 206 >gi|315081981|gb|EFT53957.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] Length = 206 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G+++ + LA V+ + H + + L+ RE L+ Sbjct: 99 MDAGVAGFLVKDTPAEDLAQ-VVRKVHAGGRAIDPALAA--ESLIEGHNPLSGREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A R G++ Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206 >gi|237732242|ref|ZP_04562723.1| transcriptional regulator NarP [Citrobacter sp. 30_2] gi|226907781|gb|EEH93699.1| transcriptional regulator NarP [Citrobacter sp. 30_2] Length = 225 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G A ++++L +LF + LTERE Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRNGAKGGKAFSARVSEYLRERDLFGAQEDPFSILTEREL 169 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 170 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|304404930|ref|ZP_07386590.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304345809|gb|EFM11643.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 237 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 36/68 (52%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 R +AA LT+RE L+ G +++EI KLG+S +TV +L + KL NR+Q Sbjct: 170 NRRTAATPLTDREKEILERVAYGDSNKEIGAKLGISENTVKNHLKNILQKLHLDNRVQLA 229 Query: 226 AKAIRFGY 233 A G Sbjct: 230 RYAHEQGI 237 >gi|300087810|ref|YP_003758332.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527543|gb|ADJ26011.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 228 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 50/121 (41%), Gaps = 13/121 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL------ELFKKRSSAAR 172 GY++ L + + G +VI + + A Sbjct: 101 AGAAGYMLKNVRGNQLIDAIRAVHSGESILQPSTTRRVINQLSKNNPIKREDTESDAPAH 160 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+LA G ++ + AE+L LS TV +L + KL+ +R +AI ++ G Sbjct: 161 ALTEREMEVLRLAAKGVSNRDTAEQLYLSSRTVQTHLSNIFKKLNVASRTEAILYGLKRG 220 Query: 233 Y 233 + Sbjct: 221 W 221 >gi|94500443|ref|ZP_01306975.1| regulatory protein CsgD [Oceanobacter sp. RED65] gi|94427478|gb|EAT12456.1| regulatory protein CsgD [Oceanobacter sp. RED65] Length = 216 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 7/113 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSA----ARNLTERE 178 + +G+ + ++ + G ++++ F+ ++ + A NLT RE Sbjct: 97 PNVSGFFYKGASQNHVSKGIRSILRGELWFSRRILSQFMANNRRPPAPEQKPAHNLTRRE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L L+ G + +IA L +S HTV ++ + KLD NRIQA+ A + Sbjct: 157 SQILSLSASGAKNADIAAALNVSTHTVKTHMYNLFKKLDVSNRIQAVNWAKEY 209 >gi|290955970|ref|YP_003487152.1| two component system response regulator [Streptomyces scabiei 87.22] gi|260645496|emb|CBG68584.1| putative two component system response regulator [Streptomyces scabiei 87.22] Length = 224 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFL----ELFKKRSSAARNL 174 G++ ++ L + A G A ++ F + K + L Sbjct: 99 AGARGFIGKGADPEDLLAAIETVAAGEPMLSAAATAALMGRFQAHAPRNWAKETERLAEL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G T+++I+E+L LS HTV ++ A K+ R Q + A G + Sbjct: 159 TPREREMLVLVASGLTNDDISERLQLSRHTVKTHVNRAMTKIGVSERAQLVTIAYESGLV 218 >gi|239941299|ref|ZP_04693236.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239987762|ref|ZP_04708426.1| two component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291444739|ref|ZP_06584129.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291347686|gb|EFE74590.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 222 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNL-- 174 L G+++ E L + + A G +VI +F L ++ A L Sbjct: 97 LRHGAAGFLLKDIEPDDLRSAIRTVAAGRSLLAPAVTRRVIEEFARLKAPEAAGAERLAV 156 Query: 175 -TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE + L G ++EEI L +S T ++ KL A +R Q + A G Sbjct: 157 LTGREREVMALVAAGLSNEEIGRALIMSPLTAKTHVSRTMTKLGARDRAQLVVMAYETGL 216 Query: 234 I 234 + Sbjct: 217 V 217 >gi|148272422|ref|YP_001221983.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830352|emb|CAN01286.1| putative two-component system, response regulator [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 224 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQV-------ITDFLELFKKRSSAARNLTERE 178 +GY++ + + V A G + ++ L+ RE Sbjct: 100 AGASGYLLKAAPEEEILAGVRAVARGEVALAPAIAAALVRQVGRPAAGPATPTPTLSPRE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T L L G T+ IA +L ++ TV +L KL +R +A+ A+ G + Sbjct: 160 TEVLALVAAGRTNARIARELHVTPATVKTHLLHVFEKLGVGDRTRAVTLAMELGLL 215 >gi|144228246|gb|ABO93630.1| PagR [Pantoea agglomerans pv. gypsophilae] gi|163676290|gb|ABY40374.1| PabR [Pantoea agglomerans pv. betae] Length = 230 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 72/220 (32%), Gaps = 13/220 (5%) Query: 23 LIQNRIKARNFALY--TINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHF 80 LIQN + A F Y I + ++ + N + + DI + D + Sbjct: 14 LIQNELNA-FFEDYKGIIYAYAIMNKKDPSQMRIINNNPEWFDIYLERKYQFIDPVIIQS 72 Query: 81 NSGLLPIIWQSIQEETVIESSG---QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE 137 + W E VI S G F G FP+ + + S+ Sbjct: 73 LRCVEDFFW----ENNVILSGGYNLTRIFNESFQYNIFQGQTFPLHDYLNNLALLSIISQ 128 Query: 138 FLMLANEVIIEAHGACY--QVITDFLELFKKR-SSAARNLTERETSCLQLAGDGYTSEEI 194 + + + ++ L L+ + L+ RE L+ G G T E+ Sbjct: 129 KDSGIDMEKNRSKIVSFLIKLHQKTLNLYSQHHQKKNVFLSPRERQILKWVGAGKTYAEV 188 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A L ++ TV +G+ KL N A+ + Sbjct: 189 AVILSIAERTVKFLMGNVMKKLGVNNATHAVKLGTELRLL 228 >gi|322516517|ref|ZP_08069435.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] gi|322124986|gb|EFX96400.1| DNA-binding response regulator [Streptococcus vestibularis ATCC 49124] Length = 200 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + YV+ L + G EL + + L++RE L Sbjct: 93 LAAQVDAYVLKERSISDLMATIHTVLVGHKEY----SPELVEGVAFDNNPLSQREQEVLA 148 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T++EIAE L LS TV Y+ + KL+A NR +A+ A ++ Sbjct: 149 MVAQGSTNQEIAESLFLSNGTVRNYMTAILTKLNAGNRTEAVRIAKEKDWL 199 >gi|282853097|ref|ZP_06262434.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282582550|gb|EFB87930.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314922742|gb|EFS86573.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314965826|gb|EFT09925.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|314982968|gb|EFT27060.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA3] gi|315091273|gb|EFT63249.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA4] gi|315094508|gb|EFT66484.1| response regulator receiver domain protein [Propionibacterium acnes HL060PA1] gi|315105228|gb|EFT77204.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327329003|gb|EGE70763.1| two-component system response regulator [Propionibacterium acnes HL103PA1] Length = 218 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G+++ + L + + A G A +++ + AA Sbjct: 97 LKAGASGFLLKDARPTELLSAIRNVADGDAVVAPSATRRLLDHVVPTLPNDPKAADKRLS 156 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G T+ EIA+ L ++ TV ++G KL+ +R+ + A G Sbjct: 157 VLTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVG 216 Query: 233 YI 234 I Sbjct: 217 LI 218 >gi|224542843|ref|ZP_03683382.1| hypothetical protein CATMIT_02035 [Catenibacterium mitsuokai DSM 15897] gi|224524239|gb|EEF93344.1| hypothetical protein CATMIT_02035 [Catenibacterium mitsuokai DSM 15897] Length = 224 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK----------RSSA 170 L + +GY++ L V+ G + T +F K Sbjct: 94 LRYGASGYLLKGVSMDELYKAVVTVNTGGAMINPDIATKVFSMFSKMQQNNYTIQVDEKD 153 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++ E +Q G G +++EIA+KL LS TV YL S KL+ +R Q A+ Sbjct: 154 VETLSKPEWKVIQHVGYGLSNKEIAQKLFLSEGTVRNYLSSILSKLNLRDRTQLAIWAVE 213 Query: 231 FGYIC 235 G + Sbjct: 214 SGLMT 218 >gi|83310446|ref|YP_420710.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945287|dbj|BAE50151.1| Response regulator [Magnetospirillum magneticum AMB-1] Length = 209 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 10/118 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L +GY + L + G Y ++ ++LE +LT Sbjct: 94 LAAGADGYALKKLGHGELMAAINAVCAGKTYLGPGLSEDLVKEYLEGSDM---GGGSLTA 150 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQL G+ + EIA++LG+++ TV + KLD N + A AIR G I Sbjct: 151 REREVLQLIARGHKNREIADELGIAIKTVETHRTKIMQKLDLHNSAELAAYAIRRGLI 208 >gi|294630515|ref|ZP_06709075.1| two-component system, regulatory protein [Streptomyces sp. e14] gi|292833848|gb|EFF92197.1| two-component system, regulatory protein [Streptomyces sp. e14] Length = 225 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 15/125 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA----CYQVITDFLELFKKRSSAA-------- 171 L G+++ + L V HG V +E F +R+ Sbjct: 96 LRAGAAGFLLKDAGPERLLAAV-TAVHGGDSLFAPVVTRRLVEAFTERADTPPAPADPPA 154 Query: 172 --RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R LT RE L+L G T+ E A++L +S TV +L KL+ +R QA+ A Sbjct: 155 DLRALTGREVEVLRLVARGLTNAEAADRLFISEATVKTHLNRTMTKLNLASRAQAVVVAY 214 Query: 230 RFGYI 234 G + Sbjct: 215 ESGLV 219 >gi|239940280|ref|ZP_04692217.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239986761|ref|ZP_04707425.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291443713|ref|ZP_06583103.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346660|gb|EFE73564.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 214 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 45/114 (39%), Gaps = 5/114 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT-----ERE 178 L +GYV + LA + G L + + ERE Sbjct: 98 LRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDTGTGTGRGSTLTERE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L DG ++ EIA L LS TV ++ + +KLD +R QA A+R G Sbjct: 158 REVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHG 211 >gi|29828005|ref|NP_822639.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29605107|dbj|BAC69174.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 221 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRS--SAARNLTER 177 +G+++ +E L V G ++I++F K + + LTER Sbjct: 99 GASGFLVKDTEPDELLRAVRAVVQGDALLSPGVTRRLISEFAARSKAPAAADSLAGLTER 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L G G +++EI +L +S T ++ VKL A +R Q + A G + Sbjct: 159 EREVMALVGFGLSNDEIGRRLVVSPLTAKTHVSRTMVKLGARDRAQLVVLAYESGLV 215 >gi|163845622|ref|YP_001633666.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222523324|ref|YP_002567794.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163666911|gb|ABY33277.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222447203|gb|ACM51469.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 213 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 47/118 (39%), Gaps = 6/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN---LTER 177 L NGYV+ + L + G Y + LE ++ A L+ER Sbjct: 94 LAAGANGYVLKRAADAELIAAIRAVLRGELYIHPALTRQLLEDLLPQTPALNPWESLSER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L L GYT+ EIAE+L LS TV Y KL +R + A+ + Sbjct: 154 EREVLLLVARGYTAAEIAEQLSLSPKTVETYRTRGMEKLGLRSRAALVQYALNHNLLT 211 >gi|300782698|ref|YP_003762989.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792212|gb|ADJ42587.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 198 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 18/174 (10%) Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 +GD+ L + P+ + + + + + + RL I F Sbjct: 34 AHGDELLARY--SRQPVDVVLVGTQRAVPTGVEATRRLVSANPQANVIVFGAPDDAGSIA 91 Query: 131 ---------YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 Y+ + + L + + + + + ++ S LTERE Sbjct: 92 AAIAGGARGYLRWDASRPELVAAL-------AHTLASTSVPAPRQPSDPGVQLTERELQV 144 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+ G ++ +I +L LS TV + KL +R QA+A R G + Sbjct: 145 LRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLVS 198 >gi|253699116|ref|YP_003020305.1| LuxR family transcriptional regulator [Geobacter sp. M21] gi|251773966|gb|ACT16547.1| two component transcriptional regulator, LuxR family [Geobacter sp. M21] Length = 216 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKR-SSAARNLT 175 L NGYV+ S F LA + A G Y +I ++L+ + NL+ Sbjct: 95 LKAGANGYVLKDSAFAELATAIRAVASGETYLPSRVTTLLIKEYLQRIPDEVPATYENLS 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE LQL DG ++EIA G+SV TV S KLD + + A+R G Sbjct: 155 LREREILQLIADGKNAKEIAFSFGVSVKTVENQRHSIMKKLDLFSIAELTKYAVRQGL 212 >gi|149184470|ref|ZP_01862788.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] gi|148831790|gb|EDL50223.1| transcriptional regulator, LuxR family protein [Erythrobacter sp. SD-21] Length = 140 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 4/112 (3%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 R F G F+SE LA V+ H + R++ +L++RE L Sbjct: 31 RDAFGSAG---FSSEPSELAEGVLTATHSILSSAHLQICRIMD-RANPEISLSQRERQVL 86 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L G G TS EI L +S TV Y KL+A +R+ A +A++ G + Sbjct: 87 ELMGSGKTSVEIGTILAISPETVKTYTKRLYEKLEANDRVTATVRALKLGLV 138 >gi|50841898|ref|YP_055125.1| two-component system response regulator [Propionibacterium acnes KPA171202] gi|50839500|gb|AAT82167.1| two-component system response regulator [Propionibacterium acnes KPA171202] Length = 206 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G+++ + +LA V+ + H + + L+ RE L+ Sbjct: 99 MDAGVAGFLVKDTPAEVLAQ-VVRKVHAGGRAIDPALAA--ESLIEGHNPLSGREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A R G++ Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRGWL 206 >gi|22127251|ref|NP_670674.1| transcriptional activator [Yersinia pestis KIM 10] gi|45443197|ref|NP_994736.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|51597561|ref|YP_071752.1| quorum-sensing transcriptional regulator [Yersinia pseudotuberculosis IP 32953] gi|108806277|ref|YP_650193.1| quorum-sensing transcriptional regulator [Yersinia pestis Antiqua] gi|108813343|ref|YP_649110.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516] gi|149367009|ref|ZP_01889042.1| quorum-sensing transcriptional regulator [Yersinia pestis CA88-4125] gi|153947986|ref|YP_001399708.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|162421668|ref|YP_001604810.1| LuxR family transcriptional regulator [Yersinia pestis Angola] gi|165927117|ref|ZP_02222949.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165939283|ref|ZP_02227832.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|166008826|ref|ZP_02229724.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166212673|ref|ZP_02238708.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|167402287|ref|ZP_02307757.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167419559|ref|ZP_02311312.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425196|ref|ZP_02316949.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167468622|ref|ZP_02333326.1| transcriptional regulator, LuxR family protein [Yersinia pestis FV-1] gi|170023040|ref|YP_001719545.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186896695|ref|YP_001873807.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218928157|ref|YP_002346032.1| quorum-sensing transcriptional regulator [Yersinia pestis CO92] gi|229836665|ref|ZP_04456830.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides A] gi|229840908|ref|ZP_04461067.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842531|ref|ZP_04462686.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229903808|ref|ZP_04518921.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516] gi|270487592|ref|ZP_06204666.1| autoinducer binding domain protein [Yersinia pestis KIM D27] gi|294502863|ref|YP_003566925.1| quorum-sensing transcriptional regulator [Yersinia pestis Z176003] gi|21960323|gb|AAM86925.1|AE013939_2 putative transcriptional activator [Yersinia pestis KIM 10] gi|30146756|gb|AAC28703.2| response regulator YtbR [Yersinia pseudotuberculosis] gi|45438065|gb|AAS63613.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Microtus str. 91001] gi|51590843|emb|CAH22497.1| Quorum-sensing transcriptional regulator [Yersinia pseudotuberculosis IP 32953] gi|108776991|gb|ABG19510.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516] gi|108778190|gb|ABG12248.1| quorum-sensing transcriptional regulator [Yersinia pestis Antiqua] gi|115346768|emb|CAL19652.1| quorum-sensing transcriptional regulator [Yersinia pestis CO92] gi|149290623|gb|EDM40699.1| quorum-sensing transcriptional regulator [Yersinia pestis CA88-4125] gi|152959481|gb|ABS46942.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis IP 31758] gi|162354483|gb|ABX88431.1| transcriptional regulator, LuxR family [Yersinia pestis Angola] gi|165912757|gb|EDR31385.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|165921013|gb|EDR38237.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165992165|gb|EDR44466.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166205965|gb|EDR50445.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|166962300|gb|EDR58321.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048324|gb|EDR59732.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055959|gb|EDR65740.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169749574|gb|ACA67092.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186699721|gb|ACC90350.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229679578|gb|EEO75681.1| quorum-sensing transcriptional regulator [Yersinia pestis Nepal516] gi|229690841|gb|EEO82895.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229697274|gb|EEO87321.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705608|gb|EEO91617.1| quorum-sensing transcriptional regulator [Yersinia pestis Pestoides A] gi|262360896|gb|ACY57617.1| quorum-sensing transcriptional regulator [Yersinia pestis D106004] gi|262364841|gb|ACY61398.1| quorum-sensing transcriptional regulator [Yersinia pestis D182038] gi|270336096|gb|EFA46873.1| autoinducer binding domain protein [Yersinia pestis KIM D27] gi|294353322|gb|ADE63663.1| quorum-sensing transcriptional regulator [Yersinia pestis Z176003] gi|320013931|gb|ADV97502.1| quorum-sensing transcriptional regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 247 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 64/218 (29%), Gaps = 26/218 (11%) Query: 42 LDFPRRQQLICELHNYD--LDSGDIPNILIETYG-------DDFLFHFNSGLLPIIWQSI 92 D P+ ++ N PN E Y D + P W Sbjct: 26 YDSPKYTYMVINKKNPGDIFIVTSYPNEWAELYTNNNYQNIDPVVLIAFRRFSPFSWDE- 84 Query: 93 QEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA---------- 142 + E L G F + + + + L Sbjct: 85 NITVLSELKLSKIFTLSKKYNIVNGFTFVLHDTMNNLAMLSLIMDDSALNGVESRVLNDR 144 Query: 143 ---NEVIIEAHGACYQVITDFLELFKKRSSAARN---LTERETSCLQLAGDGYTSEEIAE 196 ++IE H + + + +++ L+ RE L A G T +EIA Sbjct: 145 DRLQMLLIETHEKMLTLSQRNMNIQERQGKGMPGKAILSPRENEVLYWASMGKTYQEIAI 204 Query: 197 KLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ TV ++G+ KL +N QAI + I Sbjct: 205 ITNITPRTVKYHIGNVVKKLGVINAKQAIGLGVELEII 242 >gi|328885722|emb|CCA58961.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 221 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSS-AARNLT 175 L +GYV+ + L GA +I +L+ + R +T Sbjct: 101 LRAGASGYVLKSVADRDLVEACRAALRDEPFIYPGAETTLIRSYLDRARTGGPIPDRAIT 160 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L +G++S+EI + L +S TV + + KL +R++ AIR G I Sbjct: 161 EREEEILKLVAEGHSSKEIGDLLVISPKTVERHRANLLQKLGLRDRLELTRYAIRVGLI 219 >gi|116672676|ref|YP_833609.1| two component LuxR family transcriptional regulator [Arthrobacter sp. FB24] gi|116612785|gb|ABK05509.1| two component transcriptional regulator, LuxR family [Arthrobacter sp. FB24] Length = 250 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 50/146 (34%), Gaps = 34/146 (23%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF---------------- 164 L + +++ L + V + A G +V LE + Sbjct: 99 LQAGASAFLLKDVAPSELVSAVRVVASGDAVVAPRVTRRLLEAYVREGNPPAVNGQRAGT 158 Query: 165 ---------------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 ++R LT RE L+ +G ++ EIA + LS TV ++ Sbjct: 159 SAPAAGRGRHSLGEEQQRDPLLEALTPREMEMLEAMAEGLSNAEIAHRFFLSEATVKTHV 218 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYIC 235 KL +R+QA+ A G + Sbjct: 219 RRILAKLHLRDRVQAVVYAYETGLVV 244 >gi|332974286|gb|EGK11218.1| hypothetical protein HMPREF9374_2036 [Desmospora sp. 8437] Length = 438 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 28/71 (39%), Positives = 39/71 (54%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 R A++ LT RE LQ+ GY+++ I E L +S HT Y + KL+A NR + Sbjct: 367 LSPRPPASKLLTRREQELLQMIAYGYSTKHIGEILHISEHTAAEYAQTILRKLNAKNRPE 426 Query: 224 AIAKAIRFGYI 234 A+AK R G I Sbjct: 427 AVAKGFRLGMI 437 >gi|325277459|ref|ZP_08143066.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] gi|324097402|gb|EGB95641.1| LuxR family transcriptional regulator [Pseudomonas sp. TJI-51] Length = 82 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 33/68 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A LT RE L G +S EI + L TVN ++ + K D R+ A+ K Sbjct: 13 ADAPVRLTPREQQVLLWCAYGKSSWEIGQILACKESTVNFHVSNILRKFDVPTRVAAVIK 72 Query: 228 AIRFGYIC 235 AIR+G + Sbjct: 73 AIRYGMLA 80 >gi|317483987|ref|ZP_07942923.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924776|gb|EFV45926.1| response regulator receiver domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 218 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY--------QVITDFLELFKKRSSAARNLTER 177 +GY++ T++ + G Y + E ++ +S LT+R Sbjct: 97 AGAHGYLLKTADRQEFLFAIQSVLRGNRYVSTELTGTMIDWCVGEQTEEIASPLAQLTQR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L +G +++EIA +L ++ TV + + KL N + A+ G I Sbjct: 157 EREILKLVAEGCSNKEIAARLSVAEKTVVTHRTNFMRKLGLRNVREVTMFALECGLI 213 >gi|297617439|ref|YP_003702598.1| LuxR family transcriptional regulator [Syntrophothermus lipocalidus DSM 12680] gi|297145276|gb|ADI02033.1| transcriptional regulator, LuxR family [Syntrophothermus lipocalidus DSM 12680] Length = 218 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 33/61 (54%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE L + + +++EIA L LS TV +L + KL NR +A+A A + G Sbjct: 150 LSRREEEVLAMLANKLSTQEIAASLYLSESTVKTHLRNIFRKLGVRNRTEAVAAAYQLGL 209 Query: 234 I 234 + Sbjct: 210 V 210 >gi|289706045|ref|ZP_06502418.1| response regulator receiver domain protein [Micrococcus luteus SK58] gi|289557247|gb|EFD50565.1| response regulator receiver domain protein [Micrococcus luteus SK58] Length = 227 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 15/127 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR------------S 168 L GY++ +E + + G V T L ++ S Sbjct: 97 LRAGAGGYLLKDAEPPAILGAIQAVHRGESVLSPAVATKLLASIERDRPTVGPTSVQPGS 156 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LTERE L+L G ++ EIA L +S TV A L KL+ +R+Q I +A Sbjct: 157 PDGSDLTERELGVLRLLARGQSNPEIAANLFVSESTVKANLTRIMAKLEVRDRVQLIIRA 216 Query: 229 IRFGYIC 235 + G + Sbjct: 217 AQLGLVT 223 >gi|302543726|ref|ZP_07296068.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461344|gb|EFL24437.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 226 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 16/128 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L +G+++ + L V + A G ++I F + + A Sbjct: 96 LRAGASGFLLKDASAHQLGEAVRVVAAGEALLAPTVTKRLIATFSQAGWTALAGAARPGQ 155 Query: 174 ------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LTERE L L G ++ EIA+ L ++ TV ++ VKL +R QA Sbjct: 156 QARLDELTERENEVLVLVAQGRSNAEIAQHLVVAESTVKTHVSRILVKLGLRDRTQAAVF 215 Query: 228 AIRFGYIC 235 A + Sbjct: 216 AYEARLVT 223 >gi|309791797|ref|ZP_07686284.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308226119|gb|EFO79860.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 209 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 52/113 (46%), Gaps = 2/113 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--ITDFLELFKKRSSAARNLTERETSC 181 L GY++ LA + G T L +++ LTERE Sbjct: 97 LKAGAIGYLMKNVSARELAAAIKAAKAGKPTLAPEATQALVHASQQAQETEVLTERERDV 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +G + EIAE+L +S+ TV ++ + +KL NR+ A+ KAI+ + Sbjct: 157 LKLLVEGLNNAEIAERLVVSLSTVKYHISNILMKLGVDNRVAAVTKAIQKKMV 209 >gi|307610791|emb|CBX00405.1| hypothetical protein LPW_21241 [Legionella pneumophila 130b] Length = 267 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 2/116 (1%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERET 179 VR F + + F + + + + A + + K LT RE Sbjct: 152 VRDNFEQFICLFFDAMLPEIVTAIPNQKWLAIFNDSEFRKNVITRKAVKKPLAQLTPREL 211 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 CL L G T ++I+E L LS TVN + S K+ VN +A++KA R G + Sbjct: 212 QCLSLISKGMTIKKISEYLHLSSETVNTHAKSIRTKMSCVNITEAVSKAFRLGLLS 267 >gi|282853480|ref|ZP_06262817.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|282582933|gb|EFB88313.1| response regulator receiver domain protein [Propionibacterium acnes J139] gi|314922223|gb|EFS86054.1| response regulator receiver domain protein [Propionibacterium acnes HL001PA1] gi|314965305|gb|EFT09404.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA2] gi|315104424|gb|EFT76400.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] gi|327329402|gb|EGE71162.1| DNA-binding response regulator [Propionibacterium acnes HL103PA1] Length = 206 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G+++ + LA V+ + H + + L++RE L+ Sbjct: 99 MDAGVAGFLVKDTPAEDLAQ-VVRKVHAGGRAIDPALAA--ESLIEGHNPLSDREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G + IA +L LSV TV ++ SA K A NR +A A G++ Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARHRGWL 206 >gi|254485770|ref|ZP_05098975.1| two component transcriptional regulator, LuxR family [Roseobacter sp. GAI101] gi|214042639|gb|EEB83277.1| two component transcriptional regulator, LuxR family [Roseobacter sp. GAI101] Length = 204 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCL 182 L G+V T + N V A G Y + + + A L+ RE L Sbjct: 93 LDAGAAGFVPKTLPAKSMINAVKFMAMGEQYAPVDFMTAVDDTPTHPLAEKLSSRELQVL 152 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + +G ++EIA L +S TV ++ + K+ A NR QA A G Sbjct: 153 KGLTEGKANKEIARDLDISEPTVKLHMKTLYRKVGAANRTQAALIAREAGL 203 >gi|302544370|ref|ZP_07296712.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461988|gb|EFL25081.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 232 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 20/131 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRS-------- 168 L +G+++ L + G +++ F + + Sbjct: 95 LKAGASGFMLKDVPPGELLTAIRAVHSGDAVVAPSTTRRLLNRFAPMLPGTAGGGIGGRS 154 Query: 169 -----SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LTERE + L G ++ EIA +L LS TV ++G KL+ +R+Q Sbjct: 155 GAAGRPELERLTEREREVMMLVAQGLSNGEIAGRLVLSEATVKTHVGRILTKLELRDRVQ 214 Query: 224 AIAKAIRFGYI 234 + A G + Sbjct: 215 VVVMAYETGLV 225 >gi|312891076|ref|ZP_07750599.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] gi|311296384|gb|EFQ73530.1| two component transcriptional regulator, LuxR family [Mucilaginibacter paludis DSM 18603] Length = 214 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 48/120 (40%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS-----------AARNL 174 +GY++ + L + A G Y + +L K S A L Sbjct: 94 AGAHGYLLKSINKDELLFGLRHVADGGKYICMELTFKLLDKLSGYSPINEPHKTIIAIEL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +ERE L L +GYT+ EIA+KL S TV + + K N I A++ G I Sbjct: 154 SEREKEVLDLISEGYTNNEIADKLFTSRRTVEGHRQNLIEKTGVKNTPSLIRFALQNGLI 213 >gi|288959031|ref|YP_003449372.1| two-component response regulator [Azospirillum sp. B510] gi|288911339|dbj|BAI72828.1| two-component response regulator [Azospirillum sp. B510] Length = 244 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 6/113 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD------FLELFKKRSSAARNLTERET 179 GYV+ TS +L + + + G + + E + LT+R+ Sbjct: 126 MGARGYVLKTSPPEVLEHAISLALSGDIFLPLPRAVLNGALAEGPQGGDDILDRLTDRQR 185 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L G++++EIA LG+ TV ++ + KL NR Q A R G Sbjct: 186 DVFELLLAGHSNKEIARGLGVLEGTVKVHVRAIMQKLGVRNRTQVAVVAARNG 238 >gi|240080653|ref|ZP_04725196.1| NarL/NarP [Neisseria gonorrhoeae FA19] gi|240123586|ref|ZP_04736542.1| NarL/NarP [Neisseria gonorrhoeae PID332] gi|268596776|ref|ZP_06130943.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268682215|ref|ZP_06149077.1| two-component system response regulator [Neisseria gonorrhoeae PID332] gi|268550564|gb|EEZ45583.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268622499|gb|EEZ54899.1| two-component system response regulator [Neisseria gonorrhoeae PID332] Length = 218 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ L + A G ++ ++ +R+ A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQRTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 LEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|239932032|ref|ZP_04688985.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291440400|ref|ZP_06579790.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291343295|gb|EFE70251.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARNLTE 176 L G+++ ++ L V + A A + T+ + LT Sbjct: 100 LRAGAAGFLLKRTDADTLVGAVRLVARSDTLLFPAAVRTLATEHARTSPAPPAWVARLTG 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE+ L+ G T+ EIA ++ + TV ++ S K A +R QA+ A G++ Sbjct: 160 RESEVLRHVAAGLTNAEIARRMEVGPATVKTHVASVLAKTGARDRTQAVIAAYEAGFL 217 >gi|323699571|ref|ZP_08111483.1| two component transcriptional regulator, LuxR family [Desulfovibrio sp. ND132] gi|323459503|gb|EGB15368.1| two component transcriptional regulator, LuxR family [Desulfovibrio desulfuricans ND132] Length = 226 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLEL----FKKRSSAARNL 174 GY+I S L + A G + +V+ L+ + L Sbjct: 100 AGATGYIIKESAAGQLLKGLNTVAGGNLFLDSALSQEVVFKLLQTKTGEADGQDDPYATL 159 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE +++ +G T++ +AE+L +S TV + + KL + ++ + A R G I Sbjct: 160 TPREQEVMRMLAEGLTAKAVAEQLFISPKTVENHRTNLMKKLGLKSSVELVRYAARLGLI 219 >gi|117165074|emb|CAJ88627.1| putative two component response regulator-like [Streptomyces ambofaciens ATCC 23877] Length = 223 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 2/117 (1%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERE 178 PV GF + ++ L + E + + + D L + +LT RE Sbjct: 106 PVPDGFLVEDELTASAVEDALQRTLAGEVPMPTSVTRGLLDRLRESGQHRPREVSLTARE 165 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L +G ++++IA +LG+S H V + S +KL A NR A+ AI+ G I Sbjct: 166 NEVLLLLAEGMSNKQIARRLGISSHGVKRIVASLLLKLGAPNRTAAVVTAIQNGLIT 222 >gi|269125868|ref|YP_003299238.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268310826|gb|ACY97200.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 201 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G++ + LA + A GA Y D ++ LT RE L+ Sbjct: 94 MAAGVRGFLGKDAPGSRLAEVIRQVAGGARY---IDPQLAADALAAEECPLTPRELDALR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG +IA +GLS TV YL +A KL A NR A+ A G+I Sbjct: 151 AAADGSPISKIARSMGLSEGTVRNYLSAAVTKLGADNRHAAVRAARDRGWI 201 >gi|229820312|ref|YP_002881838.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566225|gb|ACQ80076.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 216 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 7/116 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTER 177 +G++ + +A + + + A +I ++ A +L+ R Sbjct: 100 AAGASGFLTKDTPGADVAGAIREVHSGRSVVSPRATRALIDRIARAAPDAAAVAADLSPR 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L G+++ EIA +L ++ TV ++ S T K+ +R+ + A R G Sbjct: 160 ERDVLALLARGFSNAEIARELFVAESTVKTHVSSLTRKVGVRDRLHVVVWAYRNGI 215 >gi|16330518|ref|NP_441246.1| NarL subfamily protein [Synechocystis sp. PCC 6803] gi|1653009|dbj|BAA17926.1| NarL subfamily [Synechocystis sp. PCC 6803] Length = 226 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 14/124 (11%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLE-------LFKKRSSAA 171 GY + L + A GA ++ T F L + Sbjct: 102 AQAQGYCVKGVAAETLVLAIRSVAAGAFWWDAIASQEIQTAFQHSSSTGAVLPLADADGE 161 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L L G +++EIA++L ++ TV ++ + KL+ +R QA AI Sbjct: 162 NPLTKRELEILSLVAKGKSNQEIADELYIAPGTVRVHVHTILRKLEVRDRTQAALLAIER 221 Query: 232 GYIC 235 + Sbjct: 222 RLVS 225 >gi|92116611|ref|YP_576340.1| LuxR family transcriptional regulator [Nitrobacter hamburgensis X14] gi|91799505|gb|ABE61880.1| transcriptional regulator, LuxR family [Nitrobacter hamburgensis X14] Length = 201 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 42/70 (60%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + +S +L+ RE L L +G ++ IA +LG+SVHTV ++ + VKL A NR A Sbjct: 130 ETAASLPIHLSPREAEVLALLAEGAPNKVIARRLGISVHTVKFHVAALLVKLGAANRTDA 189 Query: 225 IAKAIRFGYI 234 IA A+R G + Sbjct: 190 IATAMRQGLV 199 >gi|319939711|ref|ZP_08014069.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] gi|319811129|gb|EFW07438.1| DNA-binding response regulator [Streptococcus anginosus 1_2_62CV] Length = 199 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + ++ L+ +E LQ A Sbjct: 95 ADVDAYVLKERSIADLMKTIHTVLKGQKEY----SPELMEAMMTSKNPLSNQEILVLQAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S+EIA+KL LS T+ Y+ S KL A NR++A+ A G+I Sbjct: 151 ARGLSSKEIAQKLYLSNGTIRNYMSSILTKLTAENRLEAVRIAQENGWI 199 >gi|311900673|dbj|BAJ33081.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 194 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA--------R 172 L +G+++ + V + A G +V +E F R A R Sbjct: 68 LRAGASGFLVKDMALDDITTAVRVVADGDALLAPKVTRRLIEEFTARPRPAAARPPQDLR 127 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T+RE L L G G ++ EIAE L ++ TV AY+ KLDA +R+ + A G Sbjct: 128 GITDREREVLTLIGRGLSNAEIAEALFITAATVKAYVTRLLAKLDARDRVHLVITAYEHG 187 Query: 233 YIC 235 + Sbjct: 188 LVS 190 >gi|302550551|ref|ZP_07302893.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302468169|gb|EFL31262.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 220 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARNLTE 176 L G+++ S+ L V + A A + T + LT Sbjct: 100 LRVGAAGFLLKRSDADALVQAVRLVARSDSLLFPAAVRTLATAHARAHPAPPAWVAKLTG 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+ DG T+ EIA ++ + TV +++ + K +R QA+ A G++ Sbjct: 160 REREVLRRMADGLTNAEIARRMEVGPATVKSHVAAVLAKTGTRDRTQAVIAAYEAGFL 217 >gi|227355895|ref|ZP_03840287.1| nitrate/nitrite response regulator [Proteus mirabilis ATCC 29906] gi|227163883|gb|EEI48785.1| nitrate/nitrite response regulator [Proteus mirabilis ATCC 29906] Length = 201 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 2/103 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLELFKKRSSAARNLTERETSC 181 L NGY++ E ML + G + + +++L + S LT+RE Sbjct: 90 LDAGANGYLLKECELDMLLLSLRKAVVGRPVYSEKVWQYIQLRQNYSDPLSALTKRELDV 149 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LQ G +++IAE L +S TV ++ + KL +R+ A Sbjct: 150 LQEVAVGMKNKQIAENLFISEETVKVHIRNILKKLQVTSRLAA 192 >gi|254389987|ref|ZP_05005209.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294813922|ref|ZP_06772565.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197703696|gb|EDY49508.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294326521|gb|EFG08164.1| Putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 201 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I H V + S+ LT RE L Sbjct: 94 LEAGVRGFVPKTLSAQRLA-EIIRAVHAGSRYVDPELAA--DAISAGDSPLTAREAEVLA 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG EIAE+ LS TV YL SA KL A NR A+ A G++ Sbjct: 151 LAADGAPIAEIAERASLSQGTVRNYLSSAVSKLGAENRHTAVRLARHRGWV 201 >gi|184201279|ref|YP_001855486.1| NarL family two-component response regulator [Kocuria rhizophila DC2201] gi|183581509|dbj|BAG29980.1| NarL family two-component response regulator [Kocuria rhizophila DC2201] Length = 207 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 46/111 (41%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ ++ + V A G + L + + A +L+ RE L+ Sbjct: 97 LEAGATGYLLKDAQPETIGQAVHDAAAGRPVLSPSVTARLMTQVRTPAASLSPREIEILR 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +A+ L +S TV +L KL NR A+++A I Sbjct: 157 GLATGASNRALAKSLFISEATVKTHLVHIYDKLGVDNRTAAVSRAREEHVI 207 >gi|29827823|ref|NP_822457.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29604924|dbj|BAC68992.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 226 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR--NL 174 L G+++ ++ L V A G V+ +L + +A L Sbjct: 98 LRSGAAGFLLKDTDPEGLPFLVRTLADGGTVLASKVTRTVVDGYLNAGPQEPAARSLAAL 157 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE + L L +G ++ +I ++ LS TV ++ + KL R+QA A R G + Sbjct: 158 TDRERAVLVLIAEGLSNADIGTRMHLSTGTVKDHVSAILTKLKVDGRVQAALLAERAGLL 217 >gi|238799349|ref|ZP_04642788.1| Two component transcriptional regulator, LuxR family [Yersinia mollaretii ATCC 43969] gi|238716799|gb|EEQ08676.1| Two component transcriptional regulator, LuxR family [Yersinia mollaretii ATCC 43969] Length = 209 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 51/104 (49%), Gaps = 6/104 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD----FLELFKKRSSAARNLTERETS 180 +GY++ SE +L + A G +V +D +L ++ + LTERE Sbjct: 98 DAGADGYLLKDSEPEILLENIRQAALGE--KVFSDEVALYLSSRHEQVNPFGELTERELD 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LQ G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 156 VLQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 199 >gi|261408873|ref|YP_003245114.1| LuxR family two component transcriptional regulator [Paenibacillus sp. Y412MC10] gi|329928799|ref|ZP_08282638.1| response regulator protein VraR [Paenibacillus sp. HGF5] gi|261285336|gb|ACX67307.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. Y412MC10] gi|328937442|gb|EGG33863.1| response regulator protein VraR [Paenibacillus sp. HGF5] Length = 217 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTERET 179 YV+ T L + A + D E + + LTERE Sbjct: 102 AGAVSYVLKTVSADELIYA-LQGAFRGMPVMTKDVSEALTRGIRRHMVNGDESGLTEREK 160 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EI E+L +S+ TV ++ + +K + +R Q A R G++ Sbjct: 161 EVLLLIAEGKSNKEIGEELHISIKTVKTHVSNLLMKCELEDRTQLAIYAHRKGWV 215 >gi|184200360|ref|YP_001854567.1| NarL family two-component response regulator [Kocuria rhizophila DC2201] gi|183580590|dbj|BAG29061.1| putative NarL family two-component response regulator [Kocuria rhizophila DC2201] Length = 203 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 3/110 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +G+V+ + LA + H V E K + LT RE L+ Sbjct: 97 DAGASGFVVKDTPAAELAEAIRKV-HAGLRVVDPALAE--KSLLAGPNPLTPREQDVLRE 153 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G ++ +I L LS TV +L SA K NR +A A A R G++ Sbjct: 154 ASHGASAGQIGRALHLSAGTVRNHLSSAIGKTGTANRTEAAAVAARNGWL 203 >gi|146299747|ref|YP_001194338.1| two component LuxR family transcriptional regulator [Flavobacterium johnsoniae UW101] gi|146154165|gb|ABQ05019.1| two component transcriptional regulator, LuxR family [Flavobacterium johnsoniae UW101] Length = 213 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 6/114 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTE---RETS 180 NGY++ + L + A G Y ++ L K NLTE RE Sbjct: 99 GVNGYLLKNAAKEELLKAINTIASGENYFAEELEEKHLSNSSKIEKQVSNLTELSSREKE 158 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L Y + EIAEK +S++TVN + + KL+A N + A+ G + Sbjct: 159 ILVLIAHEYNTAEIAEKTFISLNTVNTHRRNLLSKLNAKNTAGLVKYAVENGLV 212 >gi|327450891|gb|EGE97545.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|328754312|gb|EGF67928.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] Length = 237 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 8/117 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARNLT 175 L +G+++ ++ L + A G + + S A LT Sbjct: 92 LDAGASGFMLKNADAESLVAGLRQVADGHALLAPEVTRRVIARSVHQGGTVTGSKAEQLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE +L G ++ EIAE+L +S TV ++ + +K D +R+Q +A +R G Sbjct: 152 AREIEVAKLVARGLSNAEIAEELVVSAATVKTHVSNCLMKCDLRDRVQLVALVLRVG 208 >gi|302540779|ref|ZP_07293121.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302458397|gb|EFL21490.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 239 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 7/112 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSAARNLTERE 178 GYV+ L + V A GA +V+ L+ RE Sbjct: 120 AGAAGYVLKQINGSDLVSAVRTVAGGRSMLDPGATARVMARLRGPQPSTPDELERLSPRE 179 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+L GDG T+ +IAE+L L+ TV + S KL RIQA A R Sbjct: 180 REILELIGDGLTNRQIAERLFLAEKTVKNRISSILSKLGVGRRIQAAVIAER 231 >gi|159037948|ref|YP_001537201.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916783|gb|ABV98210.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 230 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA----R 172 L G++ L+ + A G + + EL ++ Sbjct: 105 LRAGARGFLAKDVPSADLSAAIRAVAAGDAVVAPRILDRFLDHLAELLPDPAAGPTRLLD 164 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G ++ EIA+ L +S TV ++G KL +R+QA+ A G Sbjct: 165 PLTGREREVLIQVARGRSNAEIAQALSVSETTVKTHVGHVLTKLRLRDRVQAVVLAYESG 224 Query: 233 YI 234 I Sbjct: 225 LI 226 >gi|291299471|ref|YP_003510749.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290568691|gb|ADD41656.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 216 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRS---SAARN 173 L G+++ ++ L V + A G A +++ + R S Sbjct: 94 LRAGAMGFLVKSTPPEDLIGLVRVAADGHVVLSPVAARRMVAASADEQSTRDELRSLVGE 153 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERET L G+G ++ EI ++L LS TV Y+ +KL NR QA A G Sbjct: 154 LTERETEVLARLGEGLSNAEIGKRLYLSEATVKGYVSRLLLKLGCDNRTQAGLLARDAGL 213 >gi|86608718|ref|YP_477480.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557260|gb|ABD02217.1| DNA-binding response regulator [Synechococcus sp. JA-2-3B'a(2-13)] Length = 198 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 8/109 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY+ ++ LA + Q++++ + LT RE LQL Sbjct: 98 AGAKGYLSKETDPAELARVIR--------QILSNPERDWLPARQELPKLTPRELCVLQLM 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++IA +LGLS+ TV Y +A KLDA +R+ A+ KA + G + Sbjct: 150 KEGLANKQIARRLGLSIETVKEYASTAYRKLDASDRVTALLKAQQLGIL 198 >gi|169627165|ref|YP_001700814.1| nitrate/nitrite response transcriptional regulatory protein NarL [Mycobacterium abscessus ATCC 19977] gi|169239132|emb|CAM60160.1| Possible nitrate/nitrite response transcriptional regulatory protein NarL (LuxR family) [Mycobacterium abscessus] Length = 215 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG----ACYQVITDFLELFKKRSSAARNLTERET 179 L G++ S L V+ A G A E+ K+ A +L+ RE Sbjct: 100 LEEGAAGFLSKESTRTELVGAVLDCARGRDVVAASLTAGLAGEIRKRAQPAGPSLSTRER 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L++ G T IA L L+ TV ++ KL +R A+A+A+R G + Sbjct: 160 EVLRMIAAGQTVPAIARALFLAPSTVKTHVQRLYEKLGVGDRAAAVAEAMRRGLL 214 >gi|84387471|ref|ZP_00990490.1| response regulator [Vibrio splendidus 12B01] gi|84377724|gb|EAP94588.1| response regulator [Vibrio splendidus 12B01] Length = 210 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 3/110 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ +E L + HG A V++ +L + R+ LTERE LQ Sbjct: 98 AGADGYLLKDTEPDELIELLKQAHHGDKAYSSVVSRYLNDAESRNDIFDQLTEREMQILQ 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFG 232 GY +++IA+ L +S TV ++ S KL +R A + R+G Sbjct: 158 EVAKGYRNKQIADHLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERYG 207 >gi|320106060|ref|YP_004181650.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924581|gb|ADV81656.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 207 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 2/108 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 Y+ + L N + Y L ++ A LT RE+ L Sbjct: 99 GAMAYLTKDASGEELINAIQNVDRDLRYLPRVALDRLAERMP--AVELTPRESEVLICIT 156 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIAE+L ++ TV ++ S K+ A +R QA A++ G + Sbjct: 157 QGRSNREIAEQLRIAEKTVRIHVSSVLDKMGARDRTQATIYALQRGLV 204 >gi|320333728|ref|YP_004170439.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319755017|gb|ADV66774.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 210 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 12/116 (10%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTER 177 GY++ + L + A G A +++ DF + +LT + Sbjct: 96 DAGAVGYLLKDATSDTLTEAIHAAARGEVRLHPEAARRLVRDF-----RSPDMREHLTPK 150 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E LQL G+ + EIA++LG++ TV ++ KL +R QA A++ G Sbjct: 151 EVLTLQLIARGHANREIAQELGITEATVKTHVSRLLGKLGLTSRTQAALYALKAGL 206 >gi|309792094|ref|ZP_07686568.1| two-component system response regulator [Oscillochloris trichoides DG6] gi|308225901|gb|EFO79655.1| two-component system response regulator [Oscillochloris trichoides DG6] Length = 215 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 57/119 (47%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--------ARNLT 175 L +GY++ + L + + + A G Y + + ++ SS+ LT Sbjct: 94 LEHDADGYLLKDAPAEELLHAIRVVASGQAYLQPSITRRVLRRLSSSNAPQQPLLPPQLT 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +++E+AE + ++ TV +++ S KL NR+QA+ A+R G I Sbjct: 154 PRELDVLRLMATSRSNKEMAEAMTVTEETVRSHIKSILNKLRQPNRMQAVLMALRLGII 212 >gi|291085111|ref|ZP_06352103.2| nitrate/nitrite response regulator protein NarL [Citrobacter youngae ATCC 29220] gi|291072010|gb|EFE10119.1| nitrate/nitrite response regulator protein NarL [Citrobacter youngae ATCC 29220] Length = 225 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G A ++++L +LF + LTERE Sbjct: 110 DAGADGYLLKDSDPEVLLEAIRSGAKGGKAFSTRVSEYLRERDLFGAQEDPFSILTEREL 169 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 170 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 214 >gi|317131807|ref|YP_004091121.1| two component transcriptional regulator, LuxR family [Ethanoligenens harbinense YUAN-3] gi|315469786|gb|ADU26390.1| two component transcriptional regulator, LuxR family [Ethanoligenens harbinense YUAN-3] Length = 225 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN------- 173 L + +GY++ L+ + + G +V T + +F K + ++ Sbjct: 94 LKYGASGYLLKGVSMEELSGAIRKVSAGQAIINAEVATKVVHMFSKMAQSSLTSPTAGKT 153 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ E ++ G G +++EIA KL LS TV YL + KL+ +R Q A + Sbjct: 154 LELLSRTEKQVVREVGRGLSNKEIARKLNLSEGTVRNYLSTILSKLELRDRTQLAIWATQ 213 Query: 231 FGYIC 235 G + Sbjct: 214 SGILV 218 >gi|228997588|ref|ZP_04157200.1| Two-component response regulator [Bacillus mycoides Rock3-17] gi|228762140|gb|EEM11074.1| Two-component response regulator [Bacillus mycoides Rock3-17] Length = 201 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + + Y++ L + +G LF K LT RE L+ Sbjct: 94 MDAKVDAYLLKDQPIEFLIEAIHKVMNGERVVSADLTATLFLKED---NPLTAREVEILR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +G T+ EI + L L+ TV YL S+ KL+A +R QAI A G+I Sbjct: 151 MVKNGMTTGEIGKTLYLTNGTVRNYLSSSIQKLEAESRFQAIRIADEKGWI 201 >gi|238027886|ref|YP_002912117.1| LuxR family transcriptional regulator [Burkholderia glumae BGR1] gi|237877080|gb|ACR29413.1| Transcriptional regulator, LuxR family protein [Burkholderia glumae BGR1] Length = 243 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 58/168 (34%), Gaps = 23/168 (13%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI----FTSEFLMLA 142 W+ + + + + V + GI + + E L Sbjct: 79 YRWRDLDTDRSSLHASEADV---ASYMRGQGIVACIGASSGDPAAIRTVLQLKCEDESLH 135 Query: 143 NEVII-----EAHGACYQVITDFLELFKKRSSAAR-----------NLTERETSCLQLAG 186 + +I+ H A Q I D + +A T +E+ ++ Sbjct: 136 SALILSFIAMHLHAALTQKIPDRSHGEARMPAAETDGVGSADGEGFQFTRKESEVVKWVV 195 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EI L +S TV +L + KL NR QA+AK R G I Sbjct: 196 EGKTAWEIGRILCMSERTVKFHLTNVYEKLRVTNRAQAVAKVSRLGLI 243 >gi|256392833|ref|YP_003114397.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256359059|gb|ACU72556.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 201 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 43/130 (33%), Positives = 57/130 (43%), Gaps = 7/130 (5%) Query: 109 EGGLLPFAGIAFPVRLGFHKN----GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164 E +L +A P L G+V LA V A G + D + Sbjct: 75 ECRVLILTALATPGHLRRAVQARVAGFVSKELRPAELAEAVRTVAAGGR---VVDPALML 131 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + L++RET L+++ G EIA +L LS TV YLGSA KLDA NRI A Sbjct: 132 AALEAQPSPLSQRETEVLRMSATGARPLEIAGRLFLSHGTVRNYLGSAVAKLDARNRIDA 191 Query: 225 IAKAIRFGYI 234 I A G++ Sbjct: 192 IRIAEEAGWL 201 >gi|302531276|ref|ZP_07283618.1| two-component system response regulator [Streptomyces sp. AA4] gi|302440171|gb|EFL11987.1| two-component system response regulator [Streptomyces sp. AA4] Length = 229 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELF-------KKRSSAARN 173 L +G+++ + +L V G Q+ L+ F ++ + + Sbjct: 108 LRNGASGFLLKDAGPALLIEAVRAADRGDALVSPQITVRLLKHFDGGNTAKREAPAPSEP 167 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE ++ A G T+ EI +L LS+ TV +L S K+ A NR++ A A R G Sbjct: 168 LTARELDVVKAAARGLTNTEIGAELFLSLSTVKTHLASVQGKVGARNRVEIAAWAWRSGV 227 Query: 234 I 234 + Sbjct: 228 V 228 >gi|282863505|ref|ZP_06272564.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282561840|gb|EFB67383.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 209 Score = 94.3 bits (233), Expect = 1e-17, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +V T LA E+I H V + S+ LT RE L+ Sbjct: 102 LAAGVRAFVPKTVSARRLA-EIIRTVHAGNRYVDPELAA--DAISAGDSPLTAREAEVLE 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG EIA + LS TV YL SA KL A NR A+ A G++ Sbjct: 159 LAADGAPVAEIAARASLSQGTVRNYLSSAASKLGAENRHAAVRLARERGWV 209 >gi|318060080|ref|ZP_07978803.1| putative two-component system response regulator [Streptomyces sp. SA3_actG] gi|318080793|ref|ZP_07988125.1| putative two-component system response regulator [Streptomyces sp. SA3_actF] Length = 239 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAA--RNL 174 L GYV+ + L GA +I ++L+ ++ A L Sbjct: 118 LKAGAGGYVLKSLADRDLIEACRAAMRDEPFLYPGATGALIRNYLDQARRGEEPAGGSTL 177 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L +G++S++IA L +SV TV + + KL +R++ AIR G + Sbjct: 178 TPREEEILKLVAEGHSSKDIAALLVISVKTVERHRANTLHKLGLKDRLELTRYAIRAGLV 237 >gi|294625489|ref|ZP_06704118.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665263|ref|ZP_06730559.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600210|gb|EFF44318.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604978|gb|EFF48333.1| two-component system regulatory protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 210 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLEL---FKKRSSAARNLTERETS 180 G+++ + L + A G V TD + F+ + + +ERE + Sbjct: 97 AGAQGFLLKDAAPEDLREAIERVAAGDTLLQPVSTDPVRARYQFRDQQAPRETFSEREVA 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY+++EIA L L+ TV Y+ + KL +R +A+ KAI I Sbjct: 157 ILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210 >gi|269128421|ref|YP_003301791.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268313379|gb|ACY99753.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 210 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + + A G ++ L+ F ++ LT+RE Sbjct: 95 GARGYVTKTISGPELTDAIGRVAEGDAVFSPRLAGFVLDAFAATAAPPIDPELDQLTQRE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV ++ S KL NR + A + Sbjct: 155 REVLRLIARGYAYKEIAKELFISVKTVETHVSSVLRKLQLSNRHELSRWAAARRLV 210 >gi|238752048|ref|ZP_04613532.1| Two component transcriptional regulator, LuxR family [Yersinia rohdei ATCC 43380] gi|238709748|gb|EEQ01982.1| Two component transcriptional regulator, LuxR family [Yersinia rohdei ATCC 43380] Length = 237 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 4/103 (3%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSC 181 +GY++ SE +L + + A G +V+ +L ++ + LTERE Sbjct: 126 DAGADGYLLKDSEPEILLDNIRHAAKGEKVFSNEVVI-YLSSRHEQVNPFAELTERELDV 184 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LQ G +++++A +L +S TV ++ + KL+ +R+ A Sbjct: 185 LQEVARGMSNKQVAFELHISEETVKVHIRNLLRKLNVRSRVAA 227 >gi|145594766|ref|YP_001159063.1| regulatory protein, LuxR [Salinispora tropica CNB-440] gi|145304103|gb|ABP54685.1| regulatory protein, LuxR [Salinispora tropica CNB-440] Length = 231 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 49/120 (40%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR----NL 174 G++ LA + A G +++ +L ++ +L Sbjct: 108 AGARGFLPPEVSSTELAAAIRSVAAGDAVAAPRILDRLLNQLADLLPDPAATPSRLLDSL 167 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L G ++ EIA++L +S TV ++G+ KL +R+QA+ A G I Sbjct: 168 TGREREVLVQVARGRSNAEIAQELSVSETTVKTHVGNVLTKLRLRDRVQAVVLAYESGLI 227 >gi|315123291|ref|YP_004065297.1| two-component system regulatory protein [Pseudoalteromonas sp. SM9913] gi|315017051|gb|ADT70388.1| two-component system regulatory protein [Pseudoalteromonas sp. SM9913] Length = 204 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 4/113 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L GYV+ E L + + G +TDF L KK+ S LT +E + Sbjct: 94 LNLGARGYVLKNIELEELISAIKQVVAGERVLQSAVTDF--LLKKQLSPQLCLTGKEQTV 151 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ G +++ IA+KL S T+ ++ KL+ +R QA+ KAI I Sbjct: 152 LQCLSLGMSNKVIAKKLDNSEGTIRNHVSQILAKLEVKDRTQAVIKAINHNLI 204 >gi|146280183|ref|YP_001170340.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC 17025] gi|145558424|gb|ABP73035.1| hypothetical protein Rsph17025_4184 [Rhodobacter sphaeroides ATCC 17025] Length = 207 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 46/102 (45%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GYV + L N + G Y ++ L + + + L+ +E L+ Sbjct: 97 LHRGAAGYVEKSQSARSLVNAINFVLAGEIYVPMSLRLNSVRPSITDEKGLSPKELEVLR 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 +G ++EIA+ LG+S TV ++ S K++ NR QA Sbjct: 157 CLTNGLMNKEIAQTLGISEVTVKMHVRSICAKMNVKNRTQAA 198 >gi|158315636|ref|YP_001508144.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111041|gb|ABW13238.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 249 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 9/118 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------L 174 L G+++ + +LA V A G V L F A L Sbjct: 117 LRAGARGFLLKDAGPDLLAQAVHAAACGDALIAPNVTARLLATFAGSGPAPVPAQPVEAL 176 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T+RE L G T+ EIA L +S+ TV ++ S KL A NR++ A + G Sbjct: 177 TDREEQVLATVAGGRTNSEIAADLHISLSTVKTHIASLMAKLGARNRVEIALWAYQTG 234 >gi|323176891|gb|EFZ62481.1| response regulator [Escherichia coli 1180] Length = 204 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A G+ + + +L E+F LTERE Sbjct: 89 DAGADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTEREL 148 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 149 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 193 >gi|228997307|ref|ZP_04156929.1| Response regulator receiver [Bacillus mycoides Rock3-17] gi|229004932|ref|ZP_04162659.1| Response regulator receiver [Bacillus mycoides Rock1-4] gi|228756280|gb|EEM05598.1| Response regulator receiver [Bacillus mycoides Rock1-4] gi|228762399|gb|EEM11324.1| Response regulator receiver [Bacillus mycoides Rock3-17] Length = 578 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS----AARNLTERETSC 181 GYV+ + + L + + G LFK+ S LT RE Sbjct: 466 AGAEGYVLKSVQPEELVAAIRLVHLGGTMLSQDVATRLFKEYSPMPKKPPYELTPREMDV 525 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L +G +EIA KL LS TV Y S +KL R +A+ KA+ Sbjct: 526 LGCLKEGLRYKEIAAKLFLSEGTVRNYASSIYMKLQVSGRGEAVKKAL 573 >gi|146340687|ref|YP_001205735.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS278] gi|146193493|emb|CAL77509.1| putative transcriptional regulatory protein, LuxR family [Bradyrhizobium sp. ORS278] Length = 133 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/68 (47%), Positives = 40/68 (58%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R S A LT RE L L +G +++EIA LG+SVHT ++GS KLDA R A+A Sbjct: 64 RDSDAFQLTARERDVLALMAEGCSNKEIARSLGISVHTAKFHVGSLLDKLDATGRTDAVA 123 Query: 227 KAIRFGYI 234 A R G I Sbjct: 124 HAARRGII 131 >gi|59801167|ref|YP_207879.1| NarL/NarP [Neisseria gonorrhoeae FA 1090] gi|194098688|ref|YP_002001750.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945] gi|239998996|ref|ZP_04718920.1| NarL/NarP [Neisseria gonorrhoeae 35/02] gi|240112982|ref|ZP_04727472.1| NarL/NarP [Neisseria gonorrhoeae MS11] gi|240125768|ref|ZP_04738654.1| NarL/NarP [Neisseria gonorrhoeae SK-92-679] gi|240128290|ref|ZP_04740951.1| NarL/NarP [Neisseria gonorrhoeae SK-93-1035] gi|254493787|ref|ZP_05106958.1| two-component system response regulator [Neisseria gonorrhoeae 1291] gi|260440452|ref|ZP_05794268.1| NarL/NarP [Neisseria gonorrhoeae DGI2] gi|268594844|ref|ZP_06129011.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268599062|ref|ZP_06133229.1| two-component system response regulator [Neisseria gonorrhoeae MS11] gi|268684366|ref|ZP_06151228.1| two-component system response regulator [Neisseria gonorrhoeae SK-92-679] gi|268686687|ref|ZP_06153549.1| two-component system response regulator [Neisseria gonorrhoeae SK-93-1035] gi|291043751|ref|ZP_06569467.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|293399036|ref|ZP_06643201.1| two-component system, NarL family, nitrate/nitrite response regulator NarL [Neisseria gonorrhoeae F62] gi|59718062|gb|AAW89467.1| putative nitrite/nitrate two-component system transcriptional response regulator [Neisseria gonorrhoeae FA 1090] gi|193933978|gb|ACF29802.1| NarL/NarP [Neisseria gonorrhoeae NCCP11945] gi|226512827|gb|EEH62172.1| two-component system response regulator [Neisseria gonorrhoeae 1291] gi|268548233|gb|EEZ43651.1| conserved hypothetical protein [Neisseria gonorrhoeae 35/02] gi|268583193|gb|EEZ47869.1| two-component system response regulator [Neisseria gonorrhoeae MS11] gi|268624650|gb|EEZ57050.1| two-component system response regulator [Neisseria gonorrhoeae SK-92-679] gi|268626971|gb|EEZ59371.1| two-component system response regulator [Neisseria gonorrhoeae SK-93-1035] gi|291012214|gb|EFE04203.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|291610450|gb|EFF39560.1| two-component system, NarL family, nitrate/nitrite response regulator NarL [Neisseria gonorrhoeae F62] gi|317164288|gb|ADV07829.1| NarL/NarP [Neisseria gonorrhoeae TCDC-NG08107] Length = 218 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ L + A G ++ ++ +R+ A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQRTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 LEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|322690880|ref|YP_004220450.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] gi|320455736|dbj|BAJ66358.1| two-component response regulator [Bifidobacterium longum subsp. longum JCM 1217] Length = 248 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 27/136 (19%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLE---------------- 162 +G+++ +E L N + A A ++I +E Sbjct: 113 AGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGAHGNSTA 172 Query: 163 ----LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LT+RE L G +++EIA+KL +S+ TV ++ K++A Sbjct: 173 SSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINA 232 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA+ A + Sbjct: 233 RDRVQAVVFAYENHLV 248 >gi|297202823|ref|ZP_06920220.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197717613|gb|EDY61647.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 217 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSSAARN-LT 175 L +GYV+ + L GA ++ +L+ + R +T Sbjct: 97 LKAGASGYVLKSVADRDLVEACRAAVRDESFVYPGAERALVRSYLDRLHRGDDLPRRAVT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L +G+T++EI E L +S TV + + KL +R++ AIR G I Sbjct: 157 EREEEILKLVAEGHTTKEIGELLFISAKTVERHRANLLHKLGMRDRLELTRYAIRAGLI 215 >gi|313835112|gb|EFS72826.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA2] gi|314929089|gb|EFS92920.1| response regulator receiver domain protein [Propionibacterium acnes HL044PA1] gi|314970815|gb|EFT14913.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA3] gi|328905840|gb|EGG25616.1| response regulator receiver domain protein [Propionibacterium sp. P08] Length = 218 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G+++ + L + + A G A +++ + AA Sbjct: 97 LKAGASGFLLKDARPTELLSAIRNVADGNAVVAPSATRRLLDHVVPTLPNDPKAADKRLS 156 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G T+ EIA+ L ++ TV ++G KL+ +R+ + A G Sbjct: 157 VLTDREQEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVG 216 Query: 233 YI 234 I Sbjct: 217 LI 218 >gi|309812367|ref|ZP_07706122.1| putative nitrate/nitrite response regulator protein NarL [Dermacoccus sp. Ellin185] gi|308433672|gb|EFP57549.1| putative nitrate/nitrite response regulator protein NarL [Dermacoccus sp. Ellin185] Length = 237 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 7/114 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERET 179 +GY++ ++ L + V G V+ A LT RE+ Sbjct: 123 GASGYLLKSASAAELVDAVEATLRGDAVFTPELAGLVLAHLRGRVDTTDDPASALTPRES 182 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++ G S++IA +LGLS TV+ ++ + KL NR++ A+ G Sbjct: 183 EVLRMVAKGLASKQIASRLGLSSRTVDNHVAATLRKLHLANRVELTRFALENGL 236 >gi|238060490|ref|ZP_04605199.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237882301|gb|EEP71129.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 226 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ L + V A G A ++ FL + + Sbjct: 97 LRAGASGFIGKGIGAEDLLDAVRTIAAGDTLLSPAATRSLVARFLATPDEPAHQHPEQLG 156 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G +++EIAE++ LS TV A++ A KL+A +R Q + A + G Sbjct: 157 VLTAREREMVALVATGLSNQEIAERMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYQTG 216 Query: 233 Y 233 Sbjct: 217 L 217 >gi|253690507|ref|YP_003019697.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|34398218|gb|AAQ67211.1| transcriptional regulator [Enterobacteriaceae bacterium A2JM] gi|251757085|gb|ACT15161.1| transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 242 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 26/195 (13%) Query: 62 GDIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSGQLS--VRLEGGL 112 P+ + Y ++ H + +L P W ++ VI + QL+ L Sbjct: 48 SSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSW---EKSLVINTRLQLAKIFDLSKKY 104 Query: 113 LPFAGIAFPVRLGFHKNGYVI-------------FTSEFLMLANEVIIEAHGACYQVITD 159 G F + + F E ++I+A+ + + Sbjct: 105 NIINGYTFVLHDHGDNLAMLSIIVDSSYPDNVEKFIEEKKDTFQMLLIDAYEKIISLCRE 164 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +E KK+ + ++RE L A G T E+A LG+ TV ++G+ KL + Sbjct: 165 MIE-SKKQLNNKEMFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVL 223 Query: 220 NRIQAIAKAIRFGYI 234 N AI + I Sbjct: 224 NAKHAIRLGVELQLI 238 >gi|22125626|ref|NP_669049.1| transcriptional activator protein [Yersinia pestis KIM 10] gi|45442066|ref|NP_993605.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Microtus str. 91001] gi|51596821|ref|YP_071012.1| quorum-sensing transcriptional activator YpeR [Yersinia pseudotuberculosis IP 32953] gi|108807950|ref|YP_651866.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Antiqua] gi|108812215|ref|YP_647982.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Nepal516] gi|145599154|ref|YP_001163230.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Pestoides F] gi|149365634|ref|ZP_01887669.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis CA88-4125] gi|153948985|ref|YP_001400524.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis IP 31758] gi|162419359|ref|YP_001606210.1| LuxR family transcriptional regulator [Yersinia pestis Angola] gi|165927469|ref|ZP_02223301.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165939475|ref|ZP_02228021.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|166008189|ref|ZP_02229087.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166214550|ref|ZP_02240585.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|167402379|ref|ZP_02307842.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422303|ref|ZP_02314056.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167427015|ref|ZP_02318768.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469621|ref|ZP_02334325.1| transcriptional regulator, LuxR family protein [Yersinia pestis FV-1] gi|170023896|ref|YP_001720401.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis YPIII] gi|186895898|ref|YP_001873010.1| LuxR family transcriptional regulator [Yersinia pseudotuberculosis PB1/+] gi|218929546|ref|YP_002347421.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis CO92] gi|229837989|ref|ZP_04458148.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895186|ref|ZP_04510361.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Pestoides A] gi|229898551|ref|ZP_04513696.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Orientalis str. India 195] gi|229902547|ref|ZP_04517664.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Nepal516] gi|294504217|ref|YP_003568279.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Z176003] gi|21958535|gb|AAM85300.1|AE013776_9 putative transcriptional activator protein [Yersinia pestis KIM 10] gi|6648672|gb|AAF21289.1| transcriptional activator YpeR [Yersinia pestis] gi|45436929|gb|AAS62482.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Microtus str. 91001] gi|51590103|emb|CAH21738.1| quorum-sensing transcriptional activator YpeR [Yersinia pseudotuberculosis IP 32953] gi|108775863|gb|ABG18382.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Nepal516] gi|108779863|gb|ABG13921.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Antiqua] gi|115348157|emb|CAL21085.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis CO92] gi|145210850|gb|ABP40257.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Pestoides F] gi|149292047|gb|EDM42121.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis CA88-4125] gi|152960480|gb|ABS47941.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis IP 31758] gi|162352174|gb|ABX86122.1| transcriptional regulator, LuxR family [Yersinia pestis Angola] gi|165912524|gb|EDR31155.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. IP275] gi|165920524|gb|EDR37801.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. F1991016] gi|165992571|gb|EDR44872.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. E1979001] gi|166204252|gb|EDR48732.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. B42003004] gi|166958809|gb|EDR55830.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048212|gb|EDR59620.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167053994|gb|EDR63822.1| transcriptional regulator, LuxR family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750430|gb|ACA67948.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis YPIII] gi|186698924|gb|ACC89553.1| transcriptional regulator, LuxR family [Yersinia pseudotuberculosis PB1/+] gi|229679994|gb|EEO76093.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Nepal516] gi|229688099|gb|EEO80170.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Orientalis str. India 195] gi|229694355|gb|EEO84402.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701820|gb|EEO89844.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Pestoides A] gi|262362334|gb|ACY59055.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis D106004] gi|262366357|gb|ACY62914.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis D182038] gi|294354676|gb|ADE65017.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis Z176003] gi|320014713|gb|ADV98284.1| quorum-sensing transcriptional activator YpeR [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 245 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 71/229 (31%), Gaps = 19/229 (8%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICE--LHNYDLDSGDIPNILIETYGDDFLFHFN 81 I+N I+ R A I + ++ + + NY LD D + Sbjct: 15 IKNYIQRRIKAYGNIRYSYLLMNKKVPLHPAIISNYPLDWVKKYKKNSYHLIDPVILTAK 74 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEFLM 140 + P W + + + L G F + + + + + + Sbjct: 75 GKVAPFAWDDNSVINIKSTDSAV-FNLAREYNIVNGYTFVLHDNNNNMATLNVSSGDDDS 133 Query: 141 LANEVIIEA-----HGACYQVITDFLELFKKRSSAARNL----------TERETSCLQLA 185 + + IE + L L+ K L + RE L A Sbjct: 134 IFFDESIEVNKEKIQMLLIFIHDKMLGLYNKSHHENNTLNKKENKREIFSPRENEILYWA 193 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EIA LG+ TV ++G+ KL +N AI I I Sbjct: 194 SVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQLI 242 >gi|256380525|ref|YP_003104185.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924828|gb|ACU40339.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 198 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 Y+ + + L + + + + + ++ S LTERE L+ G + Sbjct: 101 YLRWDASRPELVAAL-------AHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKS 153 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + +I +L LS TV + KL +R QA+A R G + Sbjct: 154 NGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLVS 198 >gi|226307167|ref|YP_002767127.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226186284|dbj|BAH34388.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 224 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 10/119 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR---NLT 175 +G++ L + V A G A +I+ FL + S + LT Sbjct: 99 AGASGFIGKGIRAEDLLDAVRTVAGGNSLLSPIATSALISRFLSTPSRADSTSGIFGQLT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + L G +++EIA +L +S T ++ A KLD +R Q + A + G + Sbjct: 159 PRELEVVTLVALGMSNDEIAAELVISAVTAKTHVNRAMTKLDVRDRAQLVVLAYQCGVV 217 >gi|196233724|ref|ZP_03132564.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196222238|gb|EDY16768.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 208 Score = 93.9 bits (232), Expect = 1e-17, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 6/110 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE------AHGACYQVITDFLELFKKRSSAARNLTER 177 L +GY++ + + + + + L + + + LT R Sbjct: 95 LRAGASGYLLKRTPSAEIITAIREVHAGGSPMSMHIARKVVSHFHLARPANPEMQTLTPR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 E L L G +EIA++LG+S TV A+L + KL +R +A+ K Sbjct: 155 EHEILTLLARGLHYKEIADQLGISTSTVRAHLHTIYGKLHVQSRTEAVVK 204 >gi|302524082|ref|ZP_07276424.1| two-component system response regulator [Streptomyces sp. AA4] gi|302432977|gb|EFL04793.1| two-component system response regulator [Streptomyces sp. AA4] Length = 178 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 Y+ + + L + + + + + ++ S LTERE L+ G + Sbjct: 81 YLRWDASRPELVAAL-------AHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKS 133 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + +I +L LS TV + KL +R QA+A R G + Sbjct: 134 NGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLVS 178 >gi|297162504|gb|ADI12216.1| LuxR family two-component response regulator [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 10/116 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN-------LT 175 GYV+ + L + V A G T + + S+ + L+ Sbjct: 93 AGAAGYVLKQIKGSDLVSAVRTVASGQSMLDPATTTRLMSTLRGESAEPQPRDESLAGLS 152 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L L G+G T+ EI ++L LS TV ++ KL R+QA A Sbjct: 153 TREREILTLIGEGMTNREIGKRLYLSEKTVKNHISRLLSKLGVERRVQAAVIATHA 208 >gi|282862547|ref|ZP_06271609.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282562886|gb|EFB68426.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 218 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 3/115 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR---NLTERETS 180 L G + ++ L + + V+ +E +S A LT RE Sbjct: 101 LDCGVRGCLNKSASRTDLVSSIRAVCADNIRIVLHVSVEALTHIASTADCPDVLTRREME 160 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L ++ +I+ +L ++ TV +LG+ KL A +R++A+ KA+ G I Sbjct: 161 ILTLVSKAMSNRQISRRLTIAEGTVKRHLGTIFTKLGARSRLEAVNKAVSIGLIA 215 >gi|256784749|ref|ZP_05523180.1| two-component response regulator [Streptomyces lividans TK24] Length = 216 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 11/125 (8%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-------- 171 FP L GY+ + + V G + L + S + Sbjct: 88 FPA-LHAGARGYLTKDAGGDEIVRAVHSVLSGDAGLAPSIQRRLLEWLSESEPRPTGPPE 146 Query: 172 --RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RET L L +G T+ +IA +L +S TV ++ + K +R QA+ A Sbjct: 147 PPDGLTTRETEVLVLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAY 206 Query: 230 RFGYI 234 G + Sbjct: 207 GKGLV 211 >gi|297200745|ref|ZP_06918142.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197712315|gb|EDY56349.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 202 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I H V + S+ LT RE L+ Sbjct: 95 LEAGVRGFVPKTVSAQRLA-EIIRTVHAGNRYVDPELAA--DAISAGDSPLTVREAEVLE 151 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG EIAE+ LS TV YL SA KL A NR A+ A G++ Sbjct: 152 LAADGAPVAEIAERAALSQGTVRNYLSSAVSKLGAENRHAAVRLARERGWV 202 >gi|54022748|ref|YP_116990.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54014256|dbj|BAD55626.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 219 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN-LT 175 L +GYV+ + L G A +I ++L+ + + N LT Sbjct: 99 LKAGASGYVLKSVADRDLLEACRATLRGEPFLYPGAVTSLIREWLQRTRAGTPPPDNILT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +GY+S IA+ L +SV TV+ + + KL +R+ AIR G I Sbjct: 159 AREEEILKLVAEGYSSRGIADTLVISVKTVDRHRANILQKLGLRDRLALTRYAIRVGLI 217 >gi|260428295|ref|ZP_05782274.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] gi|260422787|gb|EEX16038.1| two component transcriptional regulator, LuxR family [Citreicella sp. SE45] Length = 220 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCL 182 L G+V T L N V + G Y + +K + A L+ RE L Sbjct: 109 LAAGAAGFVPKTLSAKSLVNAVRFMSMGEQYAPLEFLRTAEEKEGNPLADRLSRREMEVL 168 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + G +++EIA L + TV ++ + K+ A NR QA A G Sbjct: 169 ERLTQGKSNKEIARDLDIREPTVKLHVKTLYRKIGAANRTQAAIFAKEAGL 219 >gi|21224676|ref|NP_630455.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|3367769|emb|CAA20094.1| putative two-component regulator [Streptomyces coelicolor A3(2)] Length = 222 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 15/127 (11%) Query: 122 VRLG--FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR---- 172 V +G+++ + L + A G + L+ F + A R Sbjct: 90 VHAAIRAGASGFLLKDARPDELLAGIRAVASGDAVIAPALTRRLLDEFAQYVPAHRGDAA 149 Query: 173 ------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +LT+RE L G G+T+ EIA + LS TV ++G K+ A +RIQA+ Sbjct: 150 GDPRLVSLTDREREILVAVGKGWTNGEIAARFVLSESTVKTHVGRVLAKIGARDRIQAVI 209 Query: 227 KAIRFGY 233 A G Sbjct: 210 FAYDHGL 216 >gi|315103380|gb|EFT75356.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA2] Length = 210 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S +LT RE L+ + Sbjct: 101 AGATGYLLKDAPAEDLLSAIHRSARGEGALAPAVATRLMVRMRSPRTSLTAREFDVLEAS 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ +IAE L +S TV L KL +R A+AKA G+I Sbjct: 161 AQGLSNAQIAEFLVVSEATVKTDLSHIYTKLGVTSRSAAVAKARDIGFI 209 >gi|284042019|ref|YP_003392359.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946240|gb|ADB48984.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 220 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRS--SAARNL 174 L G+++ S + + V A G +++ F+ R+ + L Sbjct: 94 LRAGAVGFLVKDSAPERIVDAVRSVARGDALISPEVTRRLLEQFVSAAPARAGDATLAEL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L G ++ EIA L L TV ++G KL +R+QA+ A G + Sbjct: 154 TPRERDVLLGIAAGRSNAEIAALLQLEESTVKGHVGRMLAKLGLHSRVQAVIYAYETGLV 213 Query: 235 C 235 Sbjct: 214 T 214 >gi|312132943|ref|YP_004000282.1| response regulator [Bifidobacterium longum subsp. longum BBMN68] gi|311773923|gb|ADQ03411.1| Putative response regulator [Bifidobacterium longum subsp. longum BBMN68] Length = 248 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 55/136 (40%), Gaps = 27/136 (19%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARN----- 173 +G+++ +E L N + A A ++I +E ++ R Sbjct: 113 AGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGRPENSAT 172 Query: 174 ---------------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LT+RE L G +++EIA+KL +S+ TV ++ K++A Sbjct: 173 TSATDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKINA 232 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA+ A + Sbjct: 233 RDRVQAVVFAYENHLV 248 >gi|294010458|ref|YP_003543918.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] gi|292673788|dbj|BAI95306.1| LuxR-family transcriptional regulator [Sphingobium japonicum UT26S] Length = 248 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 82/239 (34%), Gaps = 26/239 (10%) Query: 11 SSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIE 70 + ++++ + L+ KA F Y + +D + + + D P +E Sbjct: 15 AGAIKDATALSDLMAEITKAMGFRHYALVHHVDLKPAVRSVHIV--------DYPQDWVE 66 Query: 71 TY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVR 123 + D + + W ++Q + ++ + + G P Sbjct: 67 RFQARRLYASDPIHRASHRTNVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTVPAH 126 Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDF-------LELFKKRSSAARNLTE 176 + NG F M A E++ Q++ F + S +LTE Sbjct: 127 IPGELNGSCSFA----MAAGEMLDHRQLPFVQLVGSFAFEAARKISRIHAPQSEWPSLTE 182 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 R+ C+ L G T EI++ LG+ TV ++ A + R +A+ G I Sbjct: 183 RQAECVALVARGKTDWEISQILGIGQETVIQHVKDARDRYGVTKRTLLAIRALFDGQIS 241 >gi|228991209|ref|ZP_04151167.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442] gi|228768433|gb|EEM17038.1| Response regulator receiver [Bacillus pseudomycoides DSM 12442] Length = 438 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 45/108 (41%), Gaps = 4/108 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS----AARNLTERETSC 181 GYV+ + + L + + G LFK+ SS LT RE Sbjct: 326 AGAEGYVLKSVQPEELVAAIRLVHLGGTMLSQDVATRLFKEYSSMPKKPPYELTPREMDV 385 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L +G +EIA KL LS TV Y S +KL R +A+ KA+ Sbjct: 386 LGCLKEGLRYKEIAAKLFLSEGTVRNYASSIYMKLQVSGRGEAVKKAL 433 >gi|329944904|ref|ZP_08292931.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328529715|gb|EGF56611.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 240 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 13/123 (10%) Query: 126 FHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITDF------LELFKKRSSAAR 172 +G+++ + L + + A ++I F ++ R A Sbjct: 98 AGASGFLLKDASLEELMAAIHHVHGGDAVMAPSTTRRLIEHFALPPPVVDDGDDRFRALA 157 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G ++E IA L ++ TV ++ KL +R QA+ A G Sbjct: 158 DLTAREREVLARVARGLSNEAIAHDLCVAEGTVRVHVSRILGKLGLRDRAQAVVLAYESG 217 Query: 233 YIC 235 + Sbjct: 218 LVT 220 >gi|312172015|emb|CBX80272.1| Transcriptional activator protein ExpR [Erwinia amylovora ATCC BAA-2158] Length = 240 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 79/230 (34%), Gaps = 34/230 (14%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY-------GD 74 LI+ +++ Y++ P + + P ++ Y D Sbjct: 28 RLIEQQLRELELDFYSLFIRHPVPFTR-------PKTFLYSNYPQDWLDHYWREGFYQLD 80 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 L +S +W ++T+ S+G F G++ V G + Sbjct: 81 PVLEMCSSPGKIWLW---DDKTI--SAGLCVFEHARNYGIFHGLSCSVMASNRSVGILSM 135 Query: 135 TSE----------FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 ++ L + ++E A I D K S +ERE L+ Sbjct: 136 STANSQKLIKLTTETELKIQYVLELSMAALININDISMATTKLDS-----SERELEILKW 190 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EI+ L +S +TVN + + +A N+ Q + A G I Sbjct: 191 TAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAAIGLI 240 >gi|206563380|ref|YP_002234143.1| two-component regulatory system response regulator protein [Burkholderia cenocepacia J2315] gi|198039420|emb|CAR55386.1| two-component regulatory system, response regulator protein [Burkholderia cenocepacia J2315] Length = 215 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 10/112 (8%) Query: 131 YVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +++ + L + HG ++I L K + LT RE L+ Sbjct: 104 FLLKSMRGERLLQAIHAAVHGEPTLHPGIAQRMIG---ALRKPPRNPFAALTARELEVLR 160 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G ++ IA LG++ TV +LG+ KL +R QA+A A R G + Sbjct: 161 CLAEGGSNARIAATLGITEKTVKTHLGNVMSKLHLSDRTQAVALAWREGLMA 212 >gi|58533128|gb|AAW78919.1| ExpR [Erwinia amylovora] Length = 240 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 84/244 (34%), Gaps = 36/244 (14%) Query: 8 GKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNI 67 + S + RL I+ +++ Y++ P + + P Sbjct: 16 AYEKGSGTDHITRL--IEQQLRELELDFYSLFIRHPVPFTR-------PKTFLYSNYPQD 66 Query: 68 LIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAF 120 ++ Y D L +S +W ++T+ S+G F G++ Sbjct: 67 WLDHYWREGFYQLDPVLEMCSSPGKIWLW---DDKTI--SAGLCVFEHARNYGIFHGLSC 121 Query: 121 PVRLGFHKNGYVIFTSE----------FLMLANEVIIEAHGACYQVITDFLELFKKRSSA 170 V G + ++ L + ++E A I D ++ Sbjct: 122 SVMASNRSVGILSMSTANSQKLIKLTTETELKIQYVLELSMAALININDI-----SMATT 176 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + +ERE L+ +G TS EI+ L +S +TVN + + +A N+ Q + A Sbjct: 177 KLDFSERELEILKWTAEGKTSAEISLILSISQNTVNFHQKKMQKRFNAPNKTQIASYAAA 236 Query: 231 FGYI 234 G I Sbjct: 237 VGLI 240 >gi|326381911|ref|ZP_08203604.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] gi|326199337|gb|EGD56518.1| regulatory protein LuxR [Gordonia neofelifaecis NRRL B-59395] Length = 221 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 46/115 (40%), Gaps = 11/115 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN--------L 174 GYV T + LA+ V A G ++ L+ F RS L Sbjct: 102 AGARGYVTKTIDGGELADAVRRVAEGDAVFSPRLAGFVLDSFTGRSPVPEPQLDPELDSL 161 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 T RE L+L GYT EIAE+L +SV TV + + K NR A+ Sbjct: 162 TRREMEVLRLLARGYTYREIAEELFISVKTVETHASNVLRKTQQSNRNALTRWAV 216 >gi|300788334|ref|YP_003768625.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797848|gb|ADJ48223.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 225 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 15/125 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR------------S 168 L +G+++ + L + A G + L+ + R Sbjct: 94 LRAGASGFLLKDAHPEELLAGIRAVAGGDAVIAPALTRRLLDTYGHRLPDGGATPTPPAD 153 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LT RE L G G+T+ EIAE+L LS TV ++G K+ A +RIQA+ A Sbjct: 154 PRWESLTAREQDILVAIGQGWTNGEIAERLVLSESTVKTHVGRVLAKIGARDRIQAVILA 213 Query: 229 IRFGY 233 G Sbjct: 214 YDLGL 218 >gi|271969348|ref|YP_003343544.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270512523|gb|ACZ90801.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 202 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ + LA + A G + + D + L+ RE L+ Sbjct: 95 LSAEVRGFMLKDAPPAELAGAIRRVAGG---ERVMDPQLAAAAITGRRNPLSPREVEVLR 151 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A +G EIA +L L+ TV YLG+ KLDA NR+ A+ A ++ Sbjct: 152 MASEGAEPAEIASRLHLTKGTVRNYLGAIVTKLDARNRLDAVRIATEADWL 202 >gi|326329224|ref|ZP_08195550.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] gi|325952959|gb|EGD44973.1| DNA-binding response regulator, LuxR family [Nocardioidaceae bacterium Broad-1] Length = 232 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----KRSSAARNLTERETSC 181 GYV+ + L + A G + + +S LT RE Sbjct: 120 AGARGYVVKDVDTTGLVRAIRDVASGGSAFDARSAAAMIRGVNMPVTSDDSELTSRELEV 179 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ I +L +S T ++G+ KL R +A+ +A + G + Sbjct: 180 LELLAHGLSNRAIGHRLYISDTTAKFHVGNILRKLGVSRRAEAVYEASKMGLL 232 >gi|300788038|ref|YP_003768329.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797552|gb|ADJ47927.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 216 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 56/116 (48%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNL-TERE 178 G+++ + +L + V A+G +++ F E ++R+ A +L T+RE Sbjct: 100 GACGFLLKDAGPRLLVDAVRAAANGEALVSPSVTVRLLARFTERARRRAQGAPDLLTDRE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + + G T+ EIA+ L +S+ TV +L + KL+ NR + A + G + Sbjct: 160 SDVVLAVAQGRTNAEIADDLRVSLSTVKTHLTNVQRKLELRNRTEIAIWAWQRGLL 215 >gi|304406658|ref|ZP_07388313.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304344191|gb|EFM10030.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 222 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 5/113 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFKKRSS--AARNLTERETS 180 YV+ T L + G V ++RS+ A LTERE Sbjct: 105 AGAVSYVLKTVSAEELIYALTGAVKGMPVMTSDVSQALTRGLRQRSAQGADEGLTEREKE 164 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L DG ++EIAE+L +S+ TV ++ + +K + +R Q A R G+ Sbjct: 165 VLLLIADGMANKEIAEELHISIKTVKTHVSNLLMKCELEDRTQLAVYAHRKGW 217 >gi|299533172|ref|ZP_07046556.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] gi|298718702|gb|EFI59675.1| two component transcriptional regulator, LuxR family protein [Comamonas testosteroni S44] Length = 255 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITD-----FLELFKKRSSAA 171 L GY++ S F + V+ A+G ++I F E + + Sbjct: 133 LKRGAVGYLVKNSWFGSYSQAVLEVANGGAAISPVVAKKIIPKIFKANFHEESIFKHKSF 192 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LTERE L+L G S E+A L +S TV+ ++ + K+ R QA+ AI Sbjct: 193 ESLTEREVEILKLIAQGKNSLEVASYLQISPLTVSTHIKNIYGKMQVRTRAQAVRCAILI 252 Query: 232 GYI 234 G I Sbjct: 253 GII 255 >gi|156743691|ref|YP_001433820.1| two component LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156235019|gb|ABU59802.1| two component transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 221 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 3/110 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC--YQVITDFLELFKKR-SSAARNLTERETSCL 182 +G+ + T + AHG +V+ + + S LT+RE L Sbjct: 102 MQADGFALKTDPPRQTIATIRNVAHGQIVFPRVVRQAADATQAHGQSLLARLTQRERDVL 161 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L +G + +IAE+L + TV +L + KL NR +A R G Sbjct: 162 RLLAEGMPNAQIAERLVVQESTVKYHLQNIFQKLGVTNRTEAAQVYYREG 211 >gi|152965318|ref|YP_001361102.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151359835|gb|ABS02838.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 249 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 15/125 (12%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK---------------KRSS 169 G +G+++ + L V G + L + Sbjct: 115 GAGASGFLLKDAPPEELLAAVRTVHSGDAVIAASSTRRLLQHVGPMLRAGAASPAAAAQG 174 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT RE L+ G ++ EIA + +S TV ++G K + +R+QA+ A Sbjct: 175 VPADLTPRELEVLECMAHGLSNGEIAARFVVSEATVKTHVGRVLAKTRSRDRVQAVVLAY 234 Query: 230 RFGYI 234 G + Sbjct: 235 AAGLV 239 >gi|296141209|ref|YP_003648452.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296029343|gb|ADG80113.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 206 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ T+ LA + H V + + S+ LT RE L+ Sbjct: 99 LSIGVRGFLPKTAPAATLAQVIRTV-HDGGRYVDPELAA--EAISAGDSPLTPREADVLE 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG + +EIA + L+ T YL SA KL NR +A +A G+I Sbjct: 156 FAADGASVDEIARRAHLTPGTTRNYLSSAVAKLGVANRYEATLRARERGWI 206 >gi|221200509|ref|ZP_03573551.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] gi|221206190|ref|ZP_03579204.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221174202|gb|EEE06635.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2] gi|221179850|gb|EEE12255.1| two component transcriptional regulator, LuxR family [Burkholderia multivorans CGD2M] Length = 209 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 5/115 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITD--FLELFKKRSSAARNLTERET 179 GYV ++ L + +++ +G Y ++ D + R +A LT R+ Sbjct: 95 AHGALGYVPKSASAHTLLSAIVMVLNGERYVPPLLLDDGAAYAIEPTRHAAGAPLTPRQI 154 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G ++ IA++LGLS TV A++ + L +NR QA A + G I Sbjct: 155 EVLRYLAEGVPNKVIADRLGLSEKTVKAHITAIFRTLHVLNRTQAAAAGRKAGLI 209 >gi|205372669|ref|ZP_03225480.1| hypothetical protein Bcoam_04270 [Bacillus coahuilensis m4-4] Length = 223 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 46/123 (37%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ----VITDFLELFKKRSSAARN------ 173 L +GY++ + + G FL+ K S Sbjct: 95 LEEGASGYLLKDMPTDTIVQAIKTVYSGGVVLPEDLTAQLFLDKRKTPPSDFEPVGQPVD 154 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE L G G + EIAE L ++ TV ++ + KL+ +R QA A+R Sbjct: 155 RSLLTEREWGVLSELGKGLNNREIAEALYITEGTVKNHVSNIISKLEVRDRTQAAIYAVR 214 Query: 231 FGY 233 G Sbjct: 215 HGI 217 >gi|312959972|ref|ZP_07774486.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311285756|gb|EFQ64323.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 89 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 L ++ S + + LT E L+ A +G T EI++ S TV +L + KLD NR Sbjct: 17 ALRRRLSLSGKPLTPSELEILRWASEGKTVWEISQIRATSQATVKFHLRNIYGKLDVSNR 76 Query: 222 IQAIAKAIRFGY 233 +QA+ +A+R G Sbjct: 77 VQAMNEAVRQGL 88 >gi|307292969|ref|ZP_07572815.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] gi|306881035|gb|EFN12251.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] Length = 263 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 62/200 (31%), Gaps = 2/200 (1%) Query: 32 NFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS 91 F + PR + + NY + D P W Sbjct: 35 GFPYVAMIQHGGLPRLVERALVITNYPAEFVRFYTESHAYVIDPVYEVSQLLDRPFSWDE 94 Query: 92 IQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT-SEFLMLANEVIIEAH 150 I + + G+ P+ + + F +E +M + ++ H Sbjct: 95 IPGYVDLTGTQSALFEEARLHGLVHGVTVPLHIPSESHASCTFARAEPIMASPSLLTTLH 154 Query: 151 GACYQVITDFLELFKK-RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 L L R LT RE C L G + EI++ LGLS +V ++ Sbjct: 155 IVAAFGFKAGLRLHHASRGHDVPRLTRREAQCTALVAVGKSDWEISQILGLSETSVRYFV 214 Query: 210 GSATVKLDAVNRIQAIAKAI 229 A + R + +A+A+ Sbjct: 215 SHAKQRYGVYKRSELVARAL 234 >gi|297197731|ref|ZP_06915128.1| response regulatory protein [Streptomyces sviceus ATCC 29083] gi|197716240|gb|EDY60274.1| response regulatory protein [Streptomyces sviceus ATCC 29083] Length = 215 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 39/109 (35%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L + + A G L + S L+ RE L Sbjct: 106 AGAIGYLLKAEQPEELFSAIRDAASGRGALSAPVADRLLTRLRSPRPALSAREHEILAQL 165 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +LG KL R A+A A + Sbjct: 166 ARGLGNREIARALFISEATVKTHLGRIYGKLGVETRAGAVAVAKERRLL 214 >gi|330468505|ref|YP_004406248.1| LuxR response regulator receiver [Verrucosispora maris AB-18-032] gi|328811476|gb|AEB45648.1| LuxR response regulator receiver [Verrucosispora maris AB-18-032] Length = 192 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G + + L V A G + D LT RE L+ Sbjct: 85 LAAGAHGLIGMDAPVEALVGAVREVATGGR---VIDAEVAVTALLPPGSPLTRREAEVLR 141 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G +EIA +L L+ TV +L + K NR++A+ +A R G+I Sbjct: 142 AAAEGLPLKEIARRLFLAHGTVRNHLSAVMRKTGTRNRMEAVWQARRHGWI 192 >gi|256396913|ref|YP_003118477.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256363139|gb|ACU76636.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 227 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 17/129 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAARN--- 173 L +G+++ L V + A +++ F + + A+ Sbjct: 94 LAAGASGFLLKDVTPEHLVASVRLVDTGDALLAPSITRRLVEKFAAPPAEDAGGAKASPA 153 Query: 174 -------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE L L G G ++ E+A +L LS TV ++ KL +R QA+ Sbjct: 154 VHRDLAALTPREREILALMGRGLSNTELAARLVLSEATVKTHVAHIFTKLSLRDRAQAVV 213 Query: 227 KAIRFGYIC 235 A G + Sbjct: 214 VAYETGLVA 222 >gi|18413618|dbj|BAB84309.1| putative nitrate/nitrite response regulator [Halomonas halodenitrificans] Length = 221 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAA--RNLT 175 L +GY++ + + ++ + G ++ + L + + +A +LT Sbjct: 102 LQSGADGYLLKDMDPDEMVRQLRQASLGRMVISESLTALLAEALRSHRNQPAAPDIHSLT 161 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +RE L+ G +++ IA KL ++ TV ++ KL+ +R++A A++ G Sbjct: 162 QREREILRELAAGLSNKMIARKLEITEGTVKVHVKHLLKKLNLRSRVEAAVWAVQEGI 219 >gi|300787274|ref|YP_003767565.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299796788|gb|ADJ47163.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 213 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 6/113 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFL-ELFKKRSSAARN--LTERET 179 +GY++ + LA V A G ++ + L + A LT RET Sbjct: 97 AGASGYLLKDATPEELAAAVRAAAGGETVLSPAIVAKLVNHLRSPAPAPAEPELLTPRET 156 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+L G T+ +I +L +S TV +L KL+ +R A+ A++ G Sbjct: 157 QVLRLVARGLTNADIGRELHISETTVKTHLVRMFAKLEVGDRTAAVTVAMQRG 209 >gi|291302327|ref|YP_003513605.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290571547|gb|ADD44512.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 222 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCL 182 L + +V ++ + + A D E K+R + + L+ RE+ L Sbjct: 103 LEAGASAFVPKSAPSDDVVSAARHAATTPNAFTAADLAEAMKRRLTPSGPQLSPRESQVL 162 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L DG + IA++L +S T ++ KL A NR QA+ A++ G + Sbjct: 163 KLLADGMSVAGIAKQLYVSESTAKTHISKLYEKLGAGNRAQALMTALKLGLL 214 >gi|188026100|ref|ZP_02960869.2| hypothetical protein PROSTU_02845 [Providencia stuartii ATCC 25827] gi|188021614|gb|EDU59654.1| hypothetical protein PROSTU_02845 [Providencia stuartii ATCC 25827] Length = 225 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 6/104 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD----FLELFKKRSSAARNLTERETS 180 GY++ SE ML N + A G + V ++ +L K + +LT RE Sbjct: 116 DAGAQGYLLKNSELDMLMNSMRKAAAG--HHVFSEKVYQYLVNRHKINDPLSSLTRRECE 173 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G + EI++ L +S TV ++ + KL+ +R++A Sbjct: 174 ILHEMAAGLKNREISQLLFISEETVKVHIRNLLKKLNVRSRLEA 217 >gi|37521779|ref|NP_925156.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35212777|dbj|BAC90151.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 224 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL-------ELFKKRSSAARNLTER 177 +G ++ E L N V + G + IT + E K S A +LTER Sbjct: 102 GASGCILKNVESHELLNAVGLVLSGYLVFGRAITKLIVENYHLAEEAGKYSKLAIHLTER 161 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L L +T+ EIAE+L +S TV+++ KL N + A+ +G + Sbjct: 162 EREILSLISQEFTNIEIAERLFISPRTVDSHRARLMQKLGTRNTAGLVRIAMEYGLL 218 >gi|222432075|gb|ACM50923.1| ExpR [Pectobacterium carotovorum subsp. carotovorum] Length = 242 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 68/195 (34%), Gaps = 26/195 (13%) Query: 62 GDIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSGQLS--VRLEGGL 112 P+ + Y ++ H + +L P W ++ VI + QL+ L Sbjct: 48 SSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSW---EKSLVINTRLQLAKIFNLSKKY 104 Query: 113 LPFAGIAFPVRLGFHKNGYVI-------------FTSEFLMLANEVIIEAHGACYQVITD 159 G F + + F E ++I+A+ + + Sbjct: 105 NIINGYTFVLHDHGDNLAMLSIIVDSSYPDDVDTFIEEKKDTFQMLLIDAYEKIISLCRE 164 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +E KK + ++RE L A G T E+A LG+ TV ++G+ KL + Sbjct: 165 MIE-NKKPLNNKEIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVL 223 Query: 220 NRIQAIAKAIRFGYI 234 N AI + I Sbjct: 224 NAKHAIRLGVELQLI 238 >gi|220908626|ref|YP_002483937.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219865237|gb|ACL45576.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 211 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 7/110 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 + GY++ + L + G ++ + LTE Sbjct: 94 MRAGAVGYLLKDTPPEELVQAIQSVQRGYTQLGPGLLQKLQLETPAPTITPPPGWAELTE 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RE L L G ++ EIA+ L +S TV ++ + +L +R QA Sbjct: 154 RELEILDLIATGASNREIAQTLYISEKTVKNHVTNILSRLQLRDRTQAAI 203 >gi|312195247|ref|YP_004015308.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311226583|gb|ADP79438.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 220 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA---RNLTER 177 L GY++ + + + A G + L F A LT+R Sbjct: 101 LRAGARGYLLKGARQDDVIRTINAVARGDAVFGADIAGRVLTAFTDPRPAGVTFPQLTDR 160 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L DG+ + IA +LGLS TV ++ S KL A +R AI +A R G Sbjct: 161 EREVLVLVADGWPNHRIAHRLGLSAKTVANHVSSILAKLHAPDRAAAILQARRAGL 216 >gi|253699733|ref|YP_003020922.1| LuxR family transcriptional regulator [Geobacter sp. M21] gi|251774583|gb|ACT17164.1| two component transcriptional regulator, LuxR family [Geobacter sp. M21] Length = 216 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 8/118 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFL-ELFKKRSSAARNLTER 177 GY++ L V A HG V+ D++ L + + LT R Sbjct: 96 AGARGYLLKDCASAELVQAVRQVACGEMYVCHGIIGVVVHDYVTRLPESLTQPEVPLTPR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E LQL +G ++ A +L ++V TV+ + KL + + AIR G I Sbjct: 156 EREVLQLIAEGNNAKNAAYQLNINVKTVDTHRQQIMKKLKMRSVAELTKYAIREGLIS 213 >gi|16265098|ref|NP_437890.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|307309480|ref|ZP_07589136.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] gi|307320609|ref|ZP_07600023.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|15141237|emb|CAC49750.1| putative two-component response regulator protein [Sinorhizobium meliloti 1021] gi|306893759|gb|EFN24531.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti AK83] gi|306900065|gb|EFN30685.1| two component transcriptional regulator, LuxR family [Sinorhizobium meliloti BL225C] Length = 219 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 8/110 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--------QVITDFLELFKKRSSAARNLT 175 L GY++ LA + A G Y + +S+ LT Sbjct: 96 LKEGAKGYILKGIGARALAEVIRTVASGESYVAPTLSAKLLTGQLANSAPAKSNLVAELT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RE L L G ++++IA KL L TV ++ KLD NR +A Sbjct: 156 RREQEVLHLVASGMSNKQIARKLDLHEKTVKHHMTQIMAKLDVANRTEAA 205 >gi|307326345|ref|ZP_07605541.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306888008|gb|EFN18998.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 228 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 48/119 (40%), Gaps = 8/119 (6%) Query: 122 VRLG--FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA---RN 173 V G+++ + +L V A G + L + R AA Sbjct: 105 VHTAIRNGACGFLLKDAGPELLVEAVRSAARGGALVSPAITVRLLRQWASRPGAATGANP 164 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L G T++EI +L LS+ TV +L + KL NR++ A A G Sbjct: 165 LTGRELDVARLVAVGRTNQEICAELHLSLSTVKTHLSNIQTKLAVRNRVEIAAWAWDTG 223 >gi|302524687|ref|ZP_07277029.1| predicted protein [Streptomyces sp. AA4] gi|302433582|gb|EFL05398.1| predicted protein [Streptomyces sp. AA4] Length = 499 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 48/120 (40%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRS-SAARNLT 175 L GYV+ S L V A G + +V+T + E RS A LT Sbjct: 116 LRAGAVGYVLKDSPAEDLIRAVRAVAMGEAWLDPAVTGRVLTTYREAASARSVMPAGVLT 175 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE+ L G T EIA LG+S TV A+ KL +R AI A G + Sbjct: 176 PRESDVLTAVARGLTDAEIAGTLGISTTTVEAHYERVCAKLRLRDRAAAIVYAFDHGLVA 235 >gi|134098494|ref|YP_001104155.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291003289|ref|ZP_06561262.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133911117|emb|CAM01230.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 235 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 48/119 (40%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLT 175 L +G+++ + L V A G +V L+ F + + LT Sbjct: 99 LRAGASGFLLKDAPPEELVRAVHTVAAGDALLAPRVTRRLLQRFASLGVRDAGTELSGLT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L G ++ EIA LGL+ TV ++L KL +R Q + A G + Sbjct: 159 DRERDVLLEVAKGGSNAEIARNLGLAELTVKSHLYHVMQKLHLNSRTQLVITAYETGLV 217 >gi|240014094|ref|ZP_04721007.1| NarL/NarP [Neisseria gonorrhoeae DGI18] gi|240016529|ref|ZP_04723069.1| NarL/NarP [Neisseria gonorrhoeae FA6140] gi|240115736|ref|ZP_04729798.1| NarL/NarP [Neisseria gonorrhoeae PID18] gi|240118032|ref|ZP_04732094.1| NarL/NarP [Neisseria gonorrhoeae PID1] gi|240121656|ref|ZP_04734618.1| NarL/NarP [Neisseria gonorrhoeae PID24-1] gi|268601415|ref|ZP_06135582.1| two-component system response regulator [Neisseria gonorrhoeae PID18] gi|268603746|ref|ZP_06137913.1| two-component system response regulator [Neisseria gonorrhoeae PID1] gi|268585546|gb|EEZ50222.1| two-component system response regulator [Neisseria gonorrhoeae PID18] gi|268587877|gb|EEZ52553.1| two-component system response regulator [Neisseria gonorrhoeae PID1] Length = 218 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ L + A G ++ ++ +R+ A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQRTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 LEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|116694705|ref|YP_728916.1| LuxR family transcriptional regulator [Ralstonia eutropha H16] gi|113529204|emb|CAJ95551.1| transcriptional regulator, LuxR-family [Ralstonia eutropha H16] Length = 920 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 2/102 (1%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSE 192 + + L + AC Q ++ + + AA LT +E LQL +GY++ Sbjct: 819 SRQSASLPAPYVERLLQACGQAGSEQAAGTGRPAPAALVEPLTPKEQKVLQLLAEGYSNV 878 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +AE+L +S TV +L + + KL A NR QA+A A + G + Sbjct: 879 AMAERLFVSETTVRTHLRNISAKLHASNRTQAVAIARQLGLL 920 >gi|301059949|ref|ZP_07200832.1| transcriptional regulator, LuxR family [delta proteobacterium NaphS2] gi|300445958|gb|EFK09840.1| transcriptional regulator, LuxR family [delta proteobacterium NaphS2] Length = 294 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 34/73 (46%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ S LT RE L + +G ++ EI+ L +S HTV +++ KL +R Sbjct: 222 DVEAANMSLPTPLTPRELEVLCILAEGTSNNEISHMLNISPHTVKSHIIHIFNKLGVNDR 281 Query: 222 IQAIAKAIRFGYI 234 QA A R I Sbjct: 282 TQAAVWAARHNLI 294 >gi|291301112|ref|YP_003512390.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570332|gb|ADD43297.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 215 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 8/117 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA-RNLT 175 L G+++ + +L + A G ++I F + LT Sbjct: 97 LKAGARGFLLKDAGPALLTQAIHAAADGNALIAPSVTVRLIAAFAQTHTSPPPQPIERLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE L G T+ EIA +L ++ TV A+L S KL A NR++ A G Sbjct: 157 AREEEVLVSVAQGRTNNEIASELYITQSTVKAHLASLMRKLGARNRVEVAMWAHETG 213 >gi|271968535|ref|YP_003342731.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270511710|gb|ACZ89988.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 220 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF---------KKRSSAA 171 L +G+++ + L + A G ++ LE F + Sbjct: 95 LKAGASGFLLKNALPEELLAAIRNVAAGDAAVSPRITRRLLENFAHQLPTGGAPASAERL 154 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + LT RE L G ++ EIA L L+ TV +LG +KL+ +R+QA+ A Sbjct: 155 QRLTPREREVLIEVARGLSNTEIAAGLHLAEATVKTHLGRILLKLELRDRVQAVVFAYEA 214 Query: 232 GYI 234 I Sbjct: 215 RLI 217 >gi|26990830|ref|NP_746255.1| LuxR family transcriptional regulator [Pseudomonas putida KT2440] gi|148546967|ref|YP_001267069.1| LuxR family transcriptional regulator [Pseudomonas putida F1] gi|24985838|gb|AAN69719.1|AE016608_5 transcriptional regulator, LuxR family [Pseudomonas putida KT2440] gi|148511025|gb|ABQ77885.1| regulatory protein, LuxR [Pseudomonas putida F1] gi|313498014|gb|ADR59380.1| LuxR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 82 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 36/80 (45%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + + A LT RE L G +S EI + L TVN ++ + K Sbjct: 1 MTDNARHSQQPLADAPVRLTPREQQVLLWCAYGKSSWEIGQILECKESTVNFHVSNILRK 60 Query: 216 LDAVNRIQAIAKAIRFGYIC 235 + R+ A+ KAIR+G + Sbjct: 61 FEVPTRVAAVIKAIRYGMLA 80 >gi|302533753|ref|ZP_07286095.1| two-component system response regulator [Streptomyces sp. C] gi|302442648|gb|EFL14464.1| two-component system response regulator [Streptomyces sp. C] Length = 221 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--------QVITDFLELFKKRSSAARNLT 175 L +G+++ ++ L V + A G + A LT Sbjct: 99 LRAGASGFLLKRADPDELIGAVRLVARGDSLLFPAAVRALAAAHTAAAEPPAPAWAARLT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L G +++E++E LG+ TV ++ + K + +R QA+ A G+I Sbjct: 159 DREADVLRLMATGLSNQEMSEHLGVGPQTVKTHVAAVLAKTGSRDRTQAVIAAYEGGFI 217 >gi|288920973|ref|ZP_06415266.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288347607|gb|EFC81891.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 226 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 57/124 (45%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA----- 171 L +G++ E L V A G A +I F+ + + ++AA Sbjct: 97 LRVGASGFLGKDVEADGLLAAVRTVAAGEALLSPAATRALIAQFVAIPEPTATAAASHAA 156 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE + LA +G++++EIA KL +S T ++ A KLDA +R Q + A + Sbjct: 157 LDTLTAREREVMILAAEGHSNQEIAAKLVISPLTARTHVHRAMAKLDARDRAQLVVIAYQ 216 Query: 231 FGYI 234 G + Sbjct: 217 TGLL 220 >gi|302545854|ref|ZP_07298196.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces hygroscopicus ATCC 53653] gi|302463472|gb|EFL26565.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces himastatinicus ATCC 53653] Length = 219 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL-ELFKKRSSAARNLT 175 L G+++ L + V + A G ++I ++ + +A LT Sbjct: 96 LRAGAAGFLVKDIVPEDLLHAVRVAARGDALLAPSITRKLIHRYVTQPLPTTGAALEELT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE + LA G ++ +IA+ + +S T ++ A KL A +R Q + A G + Sbjct: 156 SREREAVALAARGLSNSQIADHMVISPMTAKTHINRAMTKLHARDRAQLVVFAYESGLVS 215 >gi|239943663|ref|ZP_04695600.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 183 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 2/106 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 GY+ + L V +++ L AA LT RE L+ G Sbjct: 79 RGYLHKDASRAELRATVTQALADPTWRLAPR--RLRSAEMGAAPTLTAREIQVLEGMSHG 136 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EI +L LS TV + KL A +R A+A R+G + Sbjct: 137 RSNAEIGRELFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLV 182 >gi|219849441|ref|YP_002463874.1| LuxR family transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219543700|gb|ACL25438.1| transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 508 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 37/67 (55%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + ++ERE L+L G T+++IA L +SV+TV +L + K+ +R +A A Sbjct: 2 TNESPISEREREILRLVATGATNQQIAVALNISVNTVKVHLRNIFAKIGVESRTEATVYA 61 Query: 229 IRFGYIC 235 IR G + Sbjct: 62 IRTGIVT 68 >gi|86146693|ref|ZP_01065014.1| response regulator [Vibrio sp. MED222] gi|218676377|ref|YP_002395196.1| Nitrate/nitrite response regulator protein homolog [Vibrio splendidus LGP32] gi|85835540|gb|EAQ53677.1| response regulator [Vibrio sp. MED222] gi|218324645|emb|CAV26216.1| Nitrate/nitrite response regulator protein homolog [Vibrio splendidus LGP32] Length = 210 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L E++ +AH A V+ +L R+ LTERE L Sbjct: 98 AGADGYLLKDTEPDELI-ELLKQAHSGDKAYSSVVARYLNDADSRNDIFDQLTEREMQIL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFG 232 Q GY +++IA+ L +S TV ++ S KL +R A + R+G Sbjct: 157 QEVAKGYRNKQIADHLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERYG 207 >gi|332671209|ref|YP_004454217.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332340247|gb|AEE46830.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 207 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 42/109 (38%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V A G + L ++ LT RE L Sbjct: 96 AGATGYLLKDTPRDQLVAGVRAAARGESALSPSVARRLVQQVRGEQERLTAREQEVLAGV 155 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ I +L ++ TV +L A KL +R +A+ AI G + Sbjct: 156 ARGLSNAGIGRELFITEATVKTHLLRAFAKLGVDDRTRAVTVAIERGIL 204 >gi|297193607|ref|ZP_06911005.1| response regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|297151843|gb|EFH31371.1| response regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 207 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ L + A G + + R +A +LT+RE L Sbjct: 97 AGATGYLLKAERPEELFAAIRAAAQGRTALSAPVASRVMDRMRGAAGPSLTDRERDILGQ 156 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +LG KL R A+A A + Sbjct: 157 LARGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVAVAKEQRLL 206 >gi|256395828|ref|YP_003117392.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362054|gb|ACU75551.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 258 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 37/72 (51%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +A LT RET L+L G ++ EIAE+L +S TV +L A KL+ +R Q Sbjct: 179 SSAERAALAALTTRETDVLRLVATGLSNGEIAERLVVSEGTVKTHLNRAMAKLNLSSRAQ 238 Query: 224 AIAKAIRFGYIC 235 A+ A G + Sbjct: 239 AVVLAYESGLVV 250 >gi|54025004|ref|YP_119246.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54016512|dbj|BAD57882.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 218 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 49/119 (41%), Gaps = 7/119 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L G+++ + V + A G ++I F+ LT Sbjct: 96 LRAGAAGFLVKDIRPEDFLHAVRVAARGDALLAPSITRRLIDRFVTEPLAADVETAGLTT 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE + LA G +++EIAE++ +S T ++ A KL A +R Q + +A G + Sbjct: 156 REREAVVLAARGLSNDEIAERMVISPLTAKTHINRAMTKLHARDRAQLVIRAYESGLVA 214 >gi|158316449|ref|YP_001508957.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158111854|gb|ABW14051.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 223 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ E L + + A G A +I +L + A Sbjct: 96 LRVGASGFLGKGVEPDELVAAIRVVARGDALLSPQATRHLIEQYLRQPATPAPAVTAGLD 155 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE ++L G T++EIAE+L LS TV + A K+ A +R Q + A + G Sbjct: 156 LLTKRENEIVRLIAYGLTNDEIAEQLYLSPLTVKTHANRAMTKVAARDRAQLVVIAYQTG 215 Query: 233 Y 233 Sbjct: 216 L 216 >gi|284009120|emb|CBA76124.1| LuxR family transcriptional regulatory protein [Arsenophonus nasoniae] Length = 243 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 65/188 (34%), Gaps = 16/188 (8%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 D+ + L+ Y D + + L P W + I V +L Sbjct: 48 SDLSDELVNNYLNQKTQNIDPVIIKALNQLAPFSWDENIKINSIWP--VKKVFEPMKMLN 105 Query: 115 FAGIAFPVRLGFHKNGYVIF------TSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 +G AF + + + + E G L L++ + Sbjct: 106 ISGYAFVLHDHLNNLALLSLYMDKFLIKDIEFFIKSNKGELQGLLIHTHEMLLSLYQNEN 165 Query: 169 SAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + + + + RE+ L G T EI L +S +TV ++G+ KL +N AI+ Sbjct: 166 TTEKIIFSPRESEVLYWCSIGKTYSEIGTILNISTYTVKFHIGNVVKKLGVINAKHAISL 225 Query: 228 AIRFGYIC 235 +++ I Sbjct: 226 SVKLNLIS 233 >gi|302531524|ref|ZP_07283866.1| two-component system response regulator [Streptomyces sp. AA4] gi|302440419|gb|EFL12235.1| two-component system response regulator [Streptomyces sp. AA4] Length = 208 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 4/111 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY----QVITDFLELFKKRSSAARNLTERETSC 181 +GY++ + N V A G +L + LT+RE Sbjct: 97 AGASGYLLKQVRGQDVVNAVREVAAGRSLLDPVSTARVLDKLRHPPTDELAALTDRERDV 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+L G G ++ EIAE+L L+ TV Y+ S KL R QA A R G Sbjct: 157 LELIGQGLSNREIAERLFLAEKTVKNYVTSVLAKLGMQRRTQAAAWIARRG 207 >gi|16272666|ref|NP_438884.1| nitrate/nitrite response regulator protein [Haemophilus influenzae Rd KW20] gi|145630463|ref|ZP_01786243.1| nitrate/nitrite response regulator protein [Haemophilus influenzae R3021] gi|145632075|ref|ZP_01787810.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 3655] gi|145634865|ref|ZP_01790573.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittAA] gi|145637737|ref|ZP_01793389.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittHH] gi|148827914|ref|YP_001292667.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittGG] gi|229844595|ref|ZP_04464734.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 6P18H1] gi|260579818|ref|ZP_05847648.1| nitrate/nitrite response regulator protein [Haemophilus influenzae RdAW] gi|260583177|ref|ZP_05850957.1| nitrate/nitrite response regulator protein narP [Haemophilus influenzae NT127] gi|319775331|ref|YP_004137819.1| nitrate/nitrite response regulator protein [Haemophilus influenzae F3047] gi|319897771|ref|YP_004135968.1| nitrate/nitrite response regulator protein [Haemophilus influenzae F3031] gi|329122673|ref|ZP_08251251.1| nitrate/nitrite response regulator protein NarL [Haemophilus aegyptius ATCC 11116] gi|1171656|sp|P44845|NARP_HAEIN RecName: Full=Nitrate/nitrite response regulator protein homolog gi|1573730|gb|AAC22384.1| nitrate/nitrite response regulator protein (narP) [Haemophilus influenzae Rd KW20] gi|144983853|gb|EDJ91295.1| nitrate/nitrite response regulator protein [Haemophilus influenzae R3021] gi|144986982|gb|EDJ93512.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 3655] gi|145268031|gb|EDK08027.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittAA] gi|145269086|gb|EDK09037.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittHH] gi|148719156|gb|ABR00284.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittGG] gi|229812309|gb|EEP47999.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 6P18H1] gi|260093102|gb|EEW77035.1| nitrate/nitrite response regulator protein [Haemophilus influenzae RdAW] gi|260093795|gb|EEW77703.1| nitrate/nitrite response regulator protein narP [Haemophilus influenzae NT127] gi|301169444|emb|CBW29044.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Haemophilus influenzae 10810] gi|317433277|emb|CBY81652.1| nitrate/nitrite response regulator protein [Haemophilus influenzae F3031] gi|317449922|emb|CBY86134.1| nitrate/nitrite response regulator protein [Haemophilus influenzae F3047] gi|327472547|gb|EGF17977.1| nitrate/nitrite response regulator protein NarL [Haemophilus aegyptius ATCC 11116] Length = 208 Score = 93.9 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L ++ A G I + L + +LT+RE L Sbjct: 98 DAGADGYLLKDTEPDTLLEQIKRIAQGEVILSDSIKNLLLERTHEDNPLDSLTDREMGVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 158 RQIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|307328094|ref|ZP_07607274.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886213|gb|EFN17219.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 238 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 45/113 (39%), Gaps = 5/113 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETS 180 L GY++ + L V + G V L + R L++RE Sbjct: 126 LAAGATGYLLKDTPREELTRAVRSASSGQSVLSPAVTGRV--LGQVRKPTQGPLSDRELQ 183 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L DG T+ + A L +S TV +L KL +R A+++A + Sbjct: 184 VLRLIADGATNRQAAAALFISQATVKTHLLHVYEKLGVKDRAAAVSEAHKRHL 236 >gi|302538376|ref|ZP_07290718.1| predicted protein [Streptomyces sp. C] gi|302447271|gb|EFL19087.1| predicted protein [Streptomyces sp. C] Length = 516 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 45/123 (36%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARN--- 173 L G++ L V A ++++ ++ + A Sbjct: 387 LRAGACGFLPKDVSPEELIAAVRTVHTGEAAVAPRLLTRLLSTYVRTAPREPRPAPATTP 446 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE +L G + IA +L +SV TV ++ + KL +R QA+ A Sbjct: 447 DGLTPRELEIWRLLARGLDNAAIAAELDISVSTVKNHITAVFGKLGVRDRAQAVIAAYET 506 Query: 232 GYI 234 G + Sbjct: 507 GLV 509 >gi|197116849|ref|YP_002137276.1| LuxR family helix-turn-helix transcriptional response regulator [Geobacter bemidjiensis Bem] gi|197086209|gb|ACH37480.1| helix-turn-helix transcriptional response regulator, LuxR family [Geobacter bemidjiensis Bem] Length = 216 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKR-SSAARNLT 175 L NGYV+ S F LA + A G Y +I ++L+ + NL+ Sbjct: 95 LKAGANGYVLKDSAFAELATAIRAVATGETYLPSRVTTLLIKEYLQRIPDEVPATYENLS 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +RE LQL DG ++EIA G+SV TV S KLD + + A+R G Sbjct: 155 QREREILQLIADGRNAKEIAFSFGVSVKTVENQRHSIMKKLDLFSIAELTKYAVRQGL 212 >gi|221133626|ref|ZP_03559931.1| two component LuxR family transcriptional regulator [Glaciecola sp. HTCC2999] Length = 215 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ ++ + + A G Y I L L + + LT RE L Sbjct: 103 AGASGYILKDTDSEEVYQAIKTVAQGKSYFGSNIAQML-LASPTNPSNERLTAREQMILS 161 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S+ IA L +SV TV A+ + KL+ N + + AI G + Sbjct: 162 HIATGQSSKAIAHTLDISVRTVEAHRRNIKSKLNIDNLAELVRYAIEQGLV 212 >gi|5162957|gb|AAD40485.1|AF079973_1 luxR homolog YpsR [Yersinia pseudotuberculosis] Length = 245 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 74/229 (32%), Gaps = 19/229 (8%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICE--LHNYDLDSGDIPNILIETYGDDFLFHFN 81 I+N I+ R A I + ++ + + NY LD D + Sbjct: 15 IKNYIQRRIKAYGNIRYSYLLMNKKVPLHPAIISNYPLDWVKKYKKNSYHLIDPVILTAK 74 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEFLM 140 + P W + + + L G F + + + + + + Sbjct: 75 GKVAPFAWDDNSVINIKSTDSAV-FNLAREYNIVNGYTFVLHDNNNNMATLNVSSGDDDS 133 Query: 141 LANEVIIEAHGACYQVI-----TDFLELFKKRSSAARNL----------TERETSCLQLA 185 + + IE + Q++ L L+ K L + RE L A Sbjct: 134 IFFDESIEVNKEKIQMLLILFHDKMLGLYNKSHHENNTLNKKENKREIFSPRENEILYWA 193 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EIA LG+ TV ++G+ KL +N AI I I Sbjct: 194 SVGKTYSEIAIILGIKKSTVKFHIGNIVRKLGVLNAKHAIRLGIELQLI 242 >gi|37519842|ref|NP_923219.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35210833|dbj|BAC88214.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 224 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLEL------FKKRSSAARNLTER 177 NG ++ + + L N V + G Q IT + F + + + LT R Sbjct: 103 AGANGCLLKSVQGHELLNAVGLVLSGYLVFGQAITRLVAEEQGTGKFGRAAGSVPRLTAR 162 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L L T+ EIA++L +S TV+++ KL N + A G + Sbjct: 163 EHEVLMLIAQELTNNEIAKRLYISPRTVDSHRARLMGKLGTRNTAGLVRIAAECGLL 219 >gi|222084851|ref|YP_002543380.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221722299|gb|ACM25455.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 245 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 1/112 (0%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 +G + ++ + L+L+ E + + G F + + +LTERE CL Sbjct: 135 NVGRTRFSLMLLARDSLLLSPERLRDV-GLLAGYFASFTRSVEGKLERDFDLTERELECL 193 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 194 FWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAFAVRNNLV 245 >gi|168070046|ref|XP_001786672.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660742|gb|EDQ48513.1| predicted protein [Physcomitrella patens subsp. patens] Length = 214 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN---LTER 177 L GY++ LA + + G ++ + ++ + A N LT R Sbjct: 96 LSHGAEGYLLKAIHPKDLAAGIRVVQAGGTLISQEMASKMIKNMNSATPAKHNEFGLTAR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L G ++EIAE L LS TV Y+ + KL+ R +A KA G Sbjct: 156 EIEVLHKLAAGLRNQEIAEALFLSEGTVKNYISTIYSKLNVKGRREATQKARDSGM 211 >gi|333027679|ref|ZP_08455743.1| putative two component transcriptional regulator [Streptomyces sp. Tu6071] gi|332747531|gb|EGJ77972.1| putative two component transcriptional regulator [Streptomyces sp. Tu6071] Length = 215 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSA-----AR 172 L +G+++ S + L V A G A Q I + ++R S R Sbjct: 95 LAAGASGFLLKNSSYEELTGAVRAAAAGHSALSPAVTQRIIEGHLSGRRRPSDQDLARLR 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LTERE L+L DG ++ EIA++L +S+HTV ++ K +R QA A Sbjct: 155 DLTEREVDVLRLIRDGLSNAEIADRLVVSLHTVKTHVSRVLTKTGCQSRAQAAVLAR 211 >gi|298248552|ref|ZP_06972357.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551211|gb|EFH85077.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 226 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA--------- 171 L GY++ S+ ++ + A G + I L+ +RS++A Sbjct: 97 LQAGARGYLLKESDVEVVLQAIERAARGEMLVQPETIRRVLDYAARRSASALLPAGSIHE 156 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L G ++EI +LG++ TV +YL S KL+ +R A+ AI Sbjct: 157 VQLTEREQEVLSALAAGERNKEIGARLGITRRTVESYLNSLYAKLNVDSRAAAVMVAIER 216 Query: 232 GYI 234 G + Sbjct: 217 GLL 219 >gi|223936934|ref|ZP_03628843.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894503|gb|EEF60955.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 226 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 83/228 (36%), Gaps = 19/228 (8%) Query: 9 KKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNIL 68 + ++S ++ ++++ R + + A + +C + + IP++ Sbjct: 7 RLLPEHADVSTKIAIVEDNATLRQYLAEFVAGAPG----NRCVCACGSAEEALVKIPSLN 62 Query: 69 IETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHK 128 + D SG+ + ++E+ L+V + ++ A L Sbjct: 63 PDVVLMDIHLPGESGI--VCTARLREKLPNLQVIMLTVYKDTKMIFQA-------LKAGA 113 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTERETSCL 182 GYV+ S+ + + G +++ L+ RE L Sbjct: 114 CGYVLKRSDDKEILEAIAEVRAGGAPMTSEIARMVVRSFIADTPEKDETGQLSGREQEIL 173 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L +G +++EI KL +S TV +L KL R +A AK +R Sbjct: 174 ALLAEGLSNKEIGSKLNISFTTVRTHLMHIYEKLHVRCRTEAAAKYLR 221 >gi|160896554|ref|YP_001562136.1| two component LuxR family transcriptional regulator [Delftia acidovorans SPH-1] gi|160362138|gb|ABX33751.1| two component transcriptional regulator, LuxR family [Delftia acidovorans SPH-1] Length = 223 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 48/122 (39%), Gaps = 14/122 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----------KKRSS 169 L GY++ T + +L+ + A G +++ + F + + Sbjct: 99 LRNGAQGYLLKTIDGDLLSEALRRAARGEPVVSPEMMGKLVAAFQSQGAPEPQAPEPDEA 158 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A L+ RE L G +++EIA L ++ TV ++ KL +R+QA A Sbjct: 159 PASPLSPREEEVLVQIARGASNKEIARTLDIAETTVKIHVQHILRKLGLSSRVQAAVYAS 218 Query: 230 RF 231 Sbjct: 219 ER 220 >gi|296131165|ref|YP_003638415.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022980|gb|ADG76216.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 254 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSS-------AARN 173 L G V+ + L + A G V +E F +R + Sbjct: 103 LRAGARGLVLKDAPTSELVAAIHAAAAGDSLLSPSVTRRLIEEFARRPTVRMEATDGPAE 162 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +L G ++ E AE+L L TV +++ S KL +R+QA+ A G Sbjct: 163 LTARERDVFRLLVQGLSTAEAAERLTLGDSTVKSHVQSLYRKLGVRDRVQAVIYAYEHGL 222 Query: 234 I 234 + Sbjct: 223 V 223 >gi|239916849|ref|YP_002956407.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|281414690|ref|ZP_06246432.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] gi|239838056|gb|ACS29853.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Micrococcus luteus NCTC 2665] Length = 227 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 15/127 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR------------S 168 L GY++ +E + + G V L ++ S Sbjct: 97 LRAGAGGYLLKDAEPPAILGAIQAVHRGESVLSPAVAAKLLASIERDRPTVGPTSVQPGS 156 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LTERE L+L G ++ EIA L +S TV A L KL+ +R+Q I +A Sbjct: 157 PDGSDLTERELGVLRLLARGQSNPEIAANLFVSESTVKANLTRIMAKLEVRDRVQLIIRA 216 Query: 229 IRFGYIC 235 + G + Sbjct: 217 AQLGLVT 223 >gi|148239235|ref|YP_001224622.1| two component system response regulator [Synechococcus sp. WH 7803] gi|147847774|emb|CAK23325.1| Possible two component system response regulator [Synechococcus sp. WH 7803] Length = 227 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 9/117 (7%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 G+ F LG +G + A G Y + L++ Sbjct: 120 GVMFVSSLGKGIDG---------DFIRSLSAIAEGGNYYPKDVQTAAGYEDIEILPELSD 170 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L++ G T++EIA L +S TV ++ S K+ +R QA+ KAI+ G Sbjct: 171 REMEVLKVLSCGMTNKEIAVTLFVSAETVKTHVSSIIGKMGVKDRTQAVIKAIKAGI 227 >gi|302546067|ref|ZP_07298409.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302463685|gb|EFL26778.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 14/125 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLE-------LFKKRSS 169 L +G++ +E L + + I A G +I FL +S Sbjct: 97 LRAGASGFLGKGAEPGELLSAIRIAAAGEALLSPVATKGLIARFLAQGVPGSGDAAYDAS 156 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L G+ ++EIA +L +S TV ++ A KL A +R Q + A Sbjct: 157 RLDALTGREREVLVQVAGGHPNDEIAARLEVSPLTVKTHVNRAMAKLGARDRAQLVVIAY 216 Query: 230 RFGYI 234 G + Sbjct: 217 ETGLV 221 >gi|145640801|ref|ZP_01796383.1| nitrate/nitrite response regulator protein [Haemophilus influenzae R3021] gi|148826630|ref|YP_001291383.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittEE] gi|229845772|ref|ZP_04465884.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 7P49H1] gi|145274315|gb|EDK14179.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 22.4-21] gi|148716790|gb|ABQ99000.1| nitrate/nitrite response regulator protein [Haemophilus influenzae PittEE] gi|229810776|gb|EEP46493.1| nitrate/nitrite response regulator protein [Haemophilus influenzae 7P49H1] Length = 208 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L ++ A G I + L + +LT+RE L Sbjct: 98 DAGADGYLLKDTEPDTLLEQIKRIAQGEVILSDSIKNLLLERTHEDNPLDSLTDREMGVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 158 RQIATGLSNKQIAAQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|71906473|ref|YP_284060.1| LuxR response regulator receiver [Dechloromonas aromatica RCB] gi|71846094|gb|AAZ45590.1| regulatory protein, LuxR:Response regulator receiver [Dechloromonas aromatica RCB] Length = 221 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAA------RNL 174 L +GY++ E ML + + A G Q+ ++ + A Sbjct: 97 LRAGASGYLLKNIETDMLVDAIRRAAQGESVVSQQMTAKLIQGVRNPPKAETATIERDRF 156 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + RE L G +++EIA KL L+ TV ++ + KL+ +R+Q A+ GY Sbjct: 157 SPRERDILASLAQGESNKEIARKLDLAESTVKIHVQNIFKKLNMSSRVQVALYAVENGY 215 >gi|291445985|ref|ZP_06585375.1| luxR family two component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291348932|gb|EFE75836.1| luxR family two component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 200 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I H V + S+ LT RE L+ Sbjct: 93 LAAGVRGFVPKTVSARRLA-EIIRTVHAGNRYVDPELAA--DAISAGDSPLTAREAEVLE 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG EIAE+ LS TV YL SA K+ A NR A+ A G++ Sbjct: 150 LAADGAPVAEIAERASLSQGTVRNYLSSAASKIGAENRHTAVRLARERGWV 200 >gi|300022129|ref|YP_003754740.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299523950|gb|ADJ22419.1| two component transcriptional regulator, LuxR family [Hyphomicrobium denitrificans ATCC 51888] Length = 223 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARNLTE 176 L +GY++ E L ++ + GA + + L SS LT Sbjct: 94 LRAGADGYLLKDMEPEDLCTNLLKASSGATVLQDTLAEVLKSALLSPVSAGSSGEELLTP 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L+ +G ++ IA KLG+S TV ++ + KL+ +R++A R Sbjct: 154 REREILECLAEGLNNKTIARKLGISDATVKVHVKNVLRKLNLASRLEAAVWKHRL 208 >gi|182415000|ref|YP_001820066.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842214|gb|ACB76466.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 215 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 9/131 (6%) Query: 113 LPFAGIAFPV----RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKK 166 L F+G PV L +G+V T+ + A G Y + L Sbjct: 79 LVFSGHENPVLIREMLEAGAHGFVEKTAGLFEFKKGLETVASGGTYFGPAVAALLRNVVA 138 Query: 167 RSSAARN---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 SA+ LT+RE LQL + ++++EIA KLG+S+ TV+ + + KL+ + Sbjct: 139 NPSASNTADFLTDREREILQLVAESHSTKEIAAKLGISIKTVDNHRTNLMRKLNLHDVAS 198 Query: 224 AIAKAIRFGYI 234 A+ G I Sbjct: 199 LTRYALEVGLI 209 >gi|319442855|ref|ZP_07992011.1| two-component system response regulator [Corynebacterium variabile DSM 44702] Length = 251 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 35/144 (24%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA----------- 171 +G+++ ++ L + V + + L + + Sbjct: 99 AGASGFLLKDADPEDLNDAVRTVGEASAVISPKATARLLRQVRAGGTDVGAGGLGGADAG 158 Query: 172 ---------------------RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 LT RE L L G +++EIA +L +S+ TV ++G Sbjct: 159 RGIATSSDVPAPGPDDDLGLVDPLTPREREILVLMATGASNQEIAARLFVSLPTVKTHVG 218 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 K + +R+ A+ A R G + Sbjct: 219 RVLAKTGSRDRVHAVLFAFRHGLV 242 >gi|238059977|ref|ZP_04604686.1| two-component system response regulator [Micromonospora sp. ATCC 39149] gi|237881788|gb|EEP70616.1| two-component system response regulator [Micromonospora sp. ATCC 39149] Length = 232 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L GY++ E + + V A G V+ ++ ++ +A RN Sbjct: 94 LSAGAVGYLVKDGEPADMLDAVRRAARGEPLLAPSVLARVVDRARRSHAADRNGDIEQPD 153 Query: 174 ------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L L G G ++ EIA L + V TV ++ + KL NR+QA Sbjct: 154 TAVLAALTARERDVLSLVGVGLSNAEIARDLNVGVTTVKTHIVALLEKLGIRNRVQAGIL 213 Query: 228 AIRFGYI 234 A R G + Sbjct: 214 AHRLGLV 220 >gi|239945267|ref|ZP_04697204.1| two component LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|239991728|ref|ZP_04712392.1| two component LuxR family transcriptional regulator [Streptomyces roseosporus NRRL 11379] gi|291448730|ref|ZP_06588120.1| two component transcriptional regulator [Streptomyces roseosporus NRRL 15998] gi|291351677|gb|EFE78581.1| two component transcriptional regulator [Streptomyces roseosporus NRRL 15998] Length = 250 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 45/122 (36%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR-------N 173 L +G+++ L V G + + F + S + Sbjct: 110 LSAGASGFLLKDVTPEQLTAAVRTVRTGDALLAPAITRRLVRRFAQHGSGTAALHRDLAS 169 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G ++ E+A +L L+ TV ++ KL +R+QA+ A G Sbjct: 170 LTPRELEVFGLLARGLSNAELAARLHLAEATVKTHVARILAKLGLRDRVQAVIVAYETGL 229 Query: 234 IC 235 + Sbjct: 230 VS 231 >gi|269957500|ref|YP_003327289.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269306181|gb|ACZ31731.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 223 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 52/118 (44%), Gaps = 11/118 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G+++ +E + + A G +++ +F++ + + Sbjct: 96 LEAGVSGFLLKDAEPETITTAIRQVAAGNGTIDQTLTRRILREFVQRRSLQPVSTSRGNG 155 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L G +++EIA L + + TV ++L KL +R+QA+ A + Sbjct: 156 VLTSREQEILLLLAQGMSNDEIARTLVVELSTVKSHLARMLPKLGVRSRLQAVVWAYQ 213 >gi|239942524|ref|ZP_04694461.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988988|ref|ZP_04709652.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 206 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I H V + S+ LT RE L+ Sbjct: 99 LAAGVRGFVPKTVSARRLA-EIIRTVHAGNRYVDPELAA--DAISAGDSPLTAREAEVLE 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG EIAE+ LS TV YL SA K+ A NR A+ A G++ Sbjct: 156 LAADGAPVAEIAERASLSQGTVRNYLSSAASKIGAENRHTAVRLARERGWV 206 >gi|257054540|ref|YP_003132372.1| response regulator containing a CheY-like receiver domain-containing protein and an HTH DNA-binding domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256584412|gb|ACU95545.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Saccharomonospora viridis DSM 43017] Length = 198 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 61/174 (35%), Gaps = 18/174 (10%) Query: 71 TYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNG 130 +GD+ L + P+ + + + + + + RL I F Sbjct: 34 AHGDELLARY--SRQPVDVVLVGTQRAVPTGVEATRRLVSANPQANVIVFGAPDDAGSIA 91 Query: 131 ---------YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSC 181 Y+ + + L + + + + + ++ S LTERE Sbjct: 92 AAIAGGARGYLRWDASRPELVAAL-------AHTLASTSVPAPRQPSDPGVQLTERELQV 144 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+ G ++ +I +L LS TV + KL +R QA+A R G + Sbjct: 145 LRGMSQGKSNGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLVA 198 >gi|296130518|ref|YP_003637768.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296022333|gb|ADG75569.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 209 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 43/110 (39%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L V A G + L ++ R LT RE L Sbjct: 97 AGATGYLLKDTPREQLVAGVRAAARGESALSPSIAQRLVRQVRGGTGERLTPREREVLAG 156 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ + +L ++ TV +L A KL +R +A+ AI G + Sbjct: 157 VARGLSNAAVGRELFITEATVKTHLLRAFAKLGVDDRTRAVTVAIERGIL 206 >gi|91780463|ref|YP_555670.1| LuxR family transcriptional regulator [Burkholderia xenovorans LB400] gi|91693123|gb|ABE36320.1| transcriptional regulator, LuxR family [Burkholderia xenovorans LB400] Length = 262 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 45/180 (25%), Positives = 62/180 (34%), Gaps = 12/180 (6%) Query: 64 IPNILIETYG-------DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 P ++ Y D P W I + T + L E GL A Sbjct: 84 YPKEWVQHYQRRDYALTDPVHRAAFFQSAPYRWHDIIDLTKADH-RFLGEASEAGLP--A 140 Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEV-IIEAHGACYQVITDFLELFKKRSS-AARNL 174 G++ PV + +E+ A Q + L S AAR L Sbjct: 141 GLSIPVHQSDGSVLLFNLAGPLHSVNSEINARRACLMSAQFNFELHRLGLIHSRRAARLL 200 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T + CL G TS EI E LG S +TV+ ++ A L+ R A +A G I Sbjct: 201 TPCQIVCLTWVARGKTSAEIGEILGCSHYTVDYHVKKAMEALNIWGRTAAAVQATVQGLI 260 >gi|332142526|ref|YP_004428264.1| DNA-binding response regulator, LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327552548|gb|AEA99266.1| DNA-binding response regulator, LuxR family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 205 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ S+ L + + G +VI+ L + + L+++E S L+ Sbjct: 99 LSLGVKGFILKESDSDYLIKAIHDVSAGK--KVISTELAIMALDDN--NPLSKKEMSALK 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA +G +++IA L LS TV YL A KLDA NR+ A A + G++ Sbjct: 155 LASEGLKTQDIARSLFLSEGTVRNYLSEAISKLDATNRVDAARIAKQKGWL 205 >gi|295112119|emb|CBL28869.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Synergistetes bacterium SGP1] Length = 229 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 6/115 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKR---SSAARNLTERE 178 G+V+ +S L + G Y +V + F +R +S +L+ RE Sbjct: 95 AEGVKGFVLKSSGRSELIAAIRAACRGEPYVDPKVAGKLMTSFSRRKNENSLLDDLSPRE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G +++E+A+K LS TV ++ KL+ +R QA A + G+ Sbjct: 155 KVVLYWLSQGMSNQEVAQKTVLSEKTVKNHVSHMLKKLELRDRTQAAILAWKLGF 209 >gi|227548560|ref|ZP_03978609.1| two-component response regulator [Corynebacterium lipophiloflavum DSM 44291] gi|227079389|gb|EEI17352.1| two-component response regulator [Corynebacterium lipophiloflavum DSM 44291] Length = 201 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 41/109 (37%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + L V+ A G L ++ L+ RE LQ Sbjct: 93 AGALGYMLKDAPEPELHAAVLSAAGGKRVLSPQIAGVLAERVMHPDEALSTREIEILQAL 152 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIA L +S TV +L KL NR A+ KA I Sbjct: 153 QTGASNREIASSLFISEATVKTHLIHIYSKLGVDNRTAAVDKARERRII 201 >gi|254240101|ref|ZP_04933423.1| hypothetical protein PA2G_00741 [Pseudomonas aeruginosa 2192] gi|126193479|gb|EAZ57542.1| hypothetical protein PA2G_00741 [Pseudomonas aeruginosa 2192] Length = 901 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR Sbjct: 830 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 889 Query: 223 QAIAKAIRFGYI 234 QAI +A + Sbjct: 890 QAIRRARELSLL 901 >gi|296389855|ref|ZP_06879330.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gi|313110448|ref|ZP_07796333.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] gi|310882835|gb|EFQ41429.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016] Length = 856 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR Sbjct: 785 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 844 Query: 223 QAIAKAIRFGYI 234 QAI +A + Sbjct: 845 QAIRRARELSLL 856 >gi|307330023|ref|ZP_07609174.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306884284|gb|EFN15319.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 216 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTER 177 GY++ + + + A G ++ L SA+ LT R Sbjct: 98 AGARGYLLKGAGRDEILRALHTVARGGAVFSPRMAERLGALVGASGSASAKEAFPTLTAR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L G +IA++L ++ TV ++GS KL +R QAI +A + G Sbjct: 158 EREVLDLLAAGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVRDRAQAIVRARQAGL 213 >gi|319761227|ref|YP_004125164.1| response regulator receiver [Alicycliphilus denitrificans BC] gi|317115788|gb|ADU98276.1| response regulator receiver [Alicycliphilus denitrificans BC] Length = 224 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 15/120 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR-------- 172 L GY++ T + +LA + A G +++ + F+ + + Sbjct: 98 LRHGAQGYLLKTIDGDLLAQAIRRAARGEPVVSPEMMGKLVAAFQSQGAPEPDPGPMPPD 157 Query: 173 ----NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L+ RE L+ G +++EIA +L ++ TV ++ KL +R+QA A Sbjct: 158 DPAPQLSPREQEVLREIARGASNKEIARQLSIAETTVKIHVQHILRKLGLTSRVQAAVYA 217 >gi|239927189|ref|ZP_04684142.1| LuxR family two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291435532|ref|ZP_06574922.1| luxR family two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291338427|gb|EFE65383.1| luxR family two-component response regulator [Streptomyces ghanaensis ATCC 14672] Length = 230 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 9/115 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK------KRSSAARNLTE 176 +GYV+ L V A G T + + + A LT+ Sbjct: 107 AGASGYVLKQIRGSDLVAAVRTVARGQSLLDPSATTKLMARLRGGQQKEEEPDALPGLTD 166 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L L G+G T+ +I ++L L+ TV ++ KL RIQA A Sbjct: 167 REREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATEA 221 >gi|86604925|ref|YP_473688.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] gi|86553467|gb|ABC98425.1| DNA-binding response regulator [Synechococcus sp. JA-3-3Ab] Length = 198 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 8/109 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY+ ++ LA + Q++++ + LT RE LQL Sbjct: 98 AGAKGYLSKETDPAELARVIR--------QILSNPERDWLPARQELPKLTPRELCVLQLM 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++IA +LGLS+ TV Y +A KLDA +R+ A+ KA + G + Sbjct: 150 KEGLANKQIARRLGLSIETVKEYASAAYRKLDASDRVTALLKAQQLGIL 198 >gi|307329696|ref|ZP_07608853.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306884636|gb|EFN15665.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 231 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFL----ELFKKRSSAAR 172 L G++ L V A G A ++ FL + + + Sbjct: 97 LRAGAGGFIGKGIGAEDLLAAVRTIADGDTLLSPAATRSLVARFLATPADAPPRHAERLS 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G +++EIAE++ LS TV A++ A KL+A +R Q + A R G Sbjct: 157 VLTPREREMVALVATGLSNQEIAEQMFLSPFTVRAHVQRAMTKLEARDRAQLVVIAYRTG 216 Query: 233 Y 233 Sbjct: 217 L 217 >gi|288919634|ref|ZP_06413962.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288348923|gb|EFC83172.1| transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 90 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 4/86 (4%) Query: 153 CYQVITDFLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 +++++F + K + LT+RE L+L G + +IA++L +S +TV + Sbjct: 2 ASKLLSEFAAMIKTKDDRPQLPTPRLTDREMEVLRLVAKGLNNRDIAKQLYISENTVKNH 61 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 + + KL +R++A+ A+R + Sbjct: 62 IRNILEKLQLHSRMEAVVYAVREKLL 87 >gi|302552866|ref|ZP_07305208.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470484|gb|EFL33577.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 226 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ L + A G A +IT FL + A Sbjct: 97 LRAGASGFLGKDVTADTLLAGLRTVASGESLLSPVATRSLITRFLLAPAPGTHLAPPERL 156 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + LA +G ++ EIAE L LS TV ++ A KL+A +R Q + A + Sbjct: 157 ADLTVREREVMALAAEGRSNTEIAEDLTLSPLTVRTHIHRAMTKLNARDRAQLVVIAYQT 216 Query: 232 GYI 234 G + Sbjct: 217 GLV 219 >gi|332991848|gb|AEF01903.1| DNA-binding response regulator, LuxR family protein [Alteromonas sp. SN2] Length = 201 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V+ ++ L + + G +VI+ L L + L+ +E+ L+ Sbjct: 95 LALGAKGFVLKEADSEYLVSSLHKIVKGE--RVISPELALMALDDN--NPLSAKESKALK 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG + +IA+KL LS TV YL A KLDA NR+ A A + G++ Sbjct: 151 LAADGLKTHDIAQKLFLSEGTVRNYLSEAIAKLDATNRVDAARIAKQKGWL 201 >gi|302545882|ref|ZP_07298224.1| two-component system response regulator TcsR2 [Streptomyces hygroscopicus ATCC 53653] gi|302463500|gb|EFL26593.1| two-component system response regulator TcsR2 [Streptomyces himastatinicus ATCC 53653] Length = 201 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ LA + G + + D S+ LT+RE L A Sbjct: 96 AGAAGFLVKDGPVEELAVAIRRVLAG---ERVIDPGLAAAALSAGPNPLTQRERDVLAAA 152 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T +IA K+ LS TV YL SA K NR++A+ A + G++ Sbjct: 153 VDGATVADIAAKVHLSPATVRNYLSSAIGKTQTRNRMEAVRAARQNGWL 201 >gi|239933385|ref|ZP_04690338.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291441749|ref|ZP_06581139.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291344644|gb|EFE71600.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSA--ARNL 174 L G+++ ++ L V A G V+ +L + +A L Sbjct: 93 LRSGAAGFLLKDTDPDQLPYLVRTLADGGTVLSSKVTRTVVDGYLNYGPQEDAARSLDPL 152 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE + L +G ++ +IA ++ LS TV ++ + KL+ +R+QA A R G + Sbjct: 153 TDRERAVLGFIAEGLSNTDIAARMHLSTGTVKDHVSAILTKLEVGSRVQAALLAERAGLL 212 >gi|107101190|ref|ZP_01365108.1| hypothetical protein PaerPA_01002222 [Pseudomonas aeruginosa PACS2] Length = 856 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR Sbjct: 785 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 844 Query: 223 QAIAKAIRFGYI 234 QAI +A + Sbjct: 845 QAIRRARELSLL 856 >gi|325964374|ref|YP_004242280.1| LuxR family transcriptional regulator [Arthrobacter phenanthrenivorans Sphe3] gi|323470461|gb|ADX74146.1| two component transcriptional regulator, LuxR family [Arthrobacter phenanthrenivorans Sphe3] Length = 217 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN-LT 175 L +GYV+ + L G + +I D+LE ++ + LT Sbjct: 97 LRAGASGYVLKSVADRDLIEACRASMRGESFLYPGAVTALIRDYLERDRRGDRMPNSILT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE +L +G +++EIA+ L +S+ TV+ + + KL +R+ AIR G I Sbjct: 157 PREEQITKLIAEGNSTKEIADALKISIKTVDRHRANVLQKLGLRDRLDLTRFAIRTGLI 215 >gi|218892289|ref|YP_002441156.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58] gi|218772515|emb|CAW28297.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58] Length = 901 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR Sbjct: 830 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 889 Query: 223 QAIAKAIRFGYI 234 QAI +A + Sbjct: 890 QAIRRARELSLL 901 >gi|120402652|ref|YP_952481.1| two component LuxR family transcriptional regulator [Mycobacterium vanbaalenii PYR-1] gi|119955470|gb|ABM12475.1| two component transcriptional regulator, LuxR family [Mycobacterium vanbaalenii PYR-1] Length = 219 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNL-T 175 L +GYV+ + L L G A +I D+L + + T Sbjct: 99 LRAGASGYVLKSVADLDLLKACRATLRGEPFVYPGAVTALIQDYLNRARHGDDLPGTIVT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +GY++ EIA LG+S TV+ + + KL +R+ AIR G I Sbjct: 159 SREEEVLKLIAEGYSTREIAGTLGISAKTVDRHRANLLAKLGLRDRLALTRYAIRVGLI 217 >gi|15596956|ref|NP_250450.1| transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|116049709|ref|YP_791486.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] gi|9947737|gb|AAG05148.1|AE004601_13 probable transcriptional regulator [Pseudomonas aeruginosa PAO1] gi|115584930|gb|ABJ10945.1| putative transcriptional regulator [Pseudomonas aeruginosa UCBPP-PA14] Length = 901 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR Sbjct: 830 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 889 Query: 223 QAIAKAIRFGYI 234 QAI +A + Sbjct: 890 QAIRRARELSLL 901 >gi|288916220|ref|ZP_06410600.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288352411|gb|EFC86608.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 211 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 6/112 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTE---RET 179 +GY++ L + A G V L + L+ RE Sbjct: 98 AGASGYLLKQIRGNDLVGAIRTIAAGRSLLDPAVTQKVLARLRDEPVEDEQLSALGARER 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+L +G T+ +IA + LS TV Y+ + KL +R QA A R Sbjct: 158 QILRLIAEGMTNRQIAACVHLSEKTVKNYVSAILGKLGLTSRTQAAVFAARL 209 >gi|227112572|ref|ZP_03826228.1| virulence regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 204 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 1/104 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCL 182 L H G ++ TS +A + + G + E + +S L+ER+ L Sbjct: 93 LKHHVMGVILKTSPVDSIAQALKTVSMGMVCLPDDGVIYEGWSVDNSVKGKLSERQHEVL 152 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 QL G ++++I+ L +S TV ++L S +L+ NR QA Sbjct: 153 QLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196 >gi|254234854|ref|ZP_04928177.1| hypothetical protein PACG_00728 [Pseudomonas aeruginosa C3719] gi|126166785|gb|EAZ52296.1| hypothetical protein PACG_00728 [Pseudomonas aeruginosa C3719] Length = 901 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR Sbjct: 830 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 889 Query: 223 QAIAKAIRFGYI 234 QAI +A + Sbjct: 890 QAIRRARELSLL 901 >gi|89055684|ref|YP_511135.1| LuxR family transcriptional regulator [Jannaschia sp. CCS1] gi|88865233|gb|ABD56110.1| transcriptional regulator, LuxR family [Jannaschia sp. CCS1] Length = 243 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 65/186 (34%), Gaps = 14/186 (7%) Query: 63 DIPNILIETY-------GDDFLFH-FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLP 114 ++P +TY D FL + + + L Sbjct: 56 NLPAPFQDTYCEGGFINDDPFLSLICRDMTAAGFMTDPDDLPEADQRQGAFLDLTRSFGV 115 Query: 115 FAGIAFPVRLGFHKN--GYVI---FTSEFLMLANEVII-EAHGACYQVITDFLELFKKRS 168 + PVR G+VI + + E+ + A L ++ + Sbjct: 116 GTALCIPVRTTRQSEFGGWVIGGDLRARDVADGREIAAMQLQLAGLIAFERLSVLTRQAN 175 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 A R L+ RE CLQ G +IA +L +S V+ Y+ +A K A R QA+A A Sbjct: 176 HAHRRLSPRERECLQWLSAGLRVTQIAHRLDISESAVHLYIKNARRKFGARTREQAVAHA 235 Query: 229 IRFGYI 234 I G I Sbjct: 236 IVSGEI 241 >gi|94985808|ref|YP_605172.1| two component LuxR family transcriptional regulator [Deinococcus geothermalis DSM 11300] gi|94556089|gb|ABF46003.1| two component transcriptional regulator, LuxR family [Deinococcus geothermalis DSM 11300] Length = 221 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 12/116 (10%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTER 177 GY++ + LA+ + A G A +++ DF + LT + Sbjct: 103 DAGAMGYMLKDASSDTLADAIHAAARGEVRLHPEAARRLVRDF-----RTPEMRETLTPK 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E LQL GY++ +IA G++ TV ++ KL +R QA A+R G Sbjct: 158 EVIVLQLIARGYSNRDIARDQGVTEATVKTHVSRLLGKLGLESRTQAALYALRHGL 213 >gi|21223147|ref|NP_628926.1| two-component regulator [Streptomyces coelicolor A3(2)] gi|29831541|ref|NP_826175.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|182436552|ref|YP_001824271.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|239929430|ref|ZP_04686383.1| putative two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|239979981|ref|ZP_04702505.1| putative two-component system response regulator [Streptomyces albus J1074] gi|239990114|ref|ZP_04710778.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|254383110|ref|ZP_04998464.1| two-component system response regulator [Streptomyces sp. Mg1] gi|254392007|ref|ZP_05007198.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|256785756|ref|ZP_05524187.1| putative two-component system response regulator [Streptomyces lividans TK24] gi|282860879|ref|ZP_06269945.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|289769648|ref|ZP_06529026.1| two-component system response regulator [Streptomyces lividans TK24] gi|290958081|ref|YP_003489263.1| luxR family regulator [Streptomyces scabiei 87.22] gi|291437756|ref|ZP_06577146.1| two-component regulator [Streptomyces ghanaensis ATCC 14672] gi|291447128|ref|ZP_06586518.1| whiK [Streptomyces roseosporus NRRL 15998] gi|291451838|ref|ZP_06591228.1| whiK [Streptomyces albus J1074] gi|294630967|ref|ZP_06709527.1| two-component system, regulatory protein [Streptomyces sp. e14] gi|294814529|ref|ZP_06773172.1| Two component transcriptional regulator, LuxR family [Streptomyces clavuligerus ATCC 27064] gi|295838473|ref|ZP_06825406.1| two-component system, regulatory protein [Streptomyces sp. SPB74] gi|297192634|ref|ZP_06910032.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297201810|ref|ZP_06919207.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|302519583|ref|ZP_07271925.1| whiK [Streptomyces sp. SPB78] gi|302536316|ref|ZP_07288658.1| whiK [Streptomyces sp. C] gi|302543269|ref|ZP_07295611.1| two-component system, regulatory protein [Streptomyces hygroscopicus ATCC 53653] gi|302553613|ref|ZP_07305955.1| two-component system, regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302558923|ref|ZP_07311265.1| two-component system, regulatory protein [Streptomyces griseoflavus Tu4000] gi|307331078|ref|ZP_07610207.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|318058051|ref|ZP_07976774.1| luxR family regulator [Streptomyces sp. SA3_actG] gi|318080229|ref|ZP_07987561.1| luxR family regulator [Streptomyces sp. SA3_actF] gi|326442919|ref|ZP_08217653.1| luxR family regulator [Streptomyces clavuligerus ATCC 27064] gi|326777175|ref|ZP_08236440.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|329938172|ref|ZP_08287623.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|333026588|ref|ZP_08454652.1| putative two-component regulator [Streptomyces sp. Tu6071] gi|3449280|emb|CAA20424.1| putative two-component regulator [Streptomyces coelicolor A3(2)] gi|3618247|emb|CAA09263.1| whiK [Streptomyces coelicolor A3(2)] gi|29608657|dbj|BAC72710.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] gi|178465068|dbj|BAG19588.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|194342009|gb|EDX22975.1| two-component system response regulator [Streptomyces sp. Mg1] gi|197695725|gb|EDY42658.1| two-component system, regulatory protein [Streptomyces sp. SPB74] gi|197705685|gb|EDY51497.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197717529|gb|EDY61563.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197722965|gb|EDY66873.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|260647607|emb|CBG70712.1| putative luxR family regulator [Streptomyces scabiei 87.22] gi|282564615|gb|EFB70151.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|289699847|gb|EFD67276.1| two-component system response regulator [Streptomyces lividans TK24] gi|291340651|gb|EFE67607.1| two-component regulator [Streptomyces ghanaensis ATCC 14672] gi|291350075|gb|EFE76979.1| whiK [Streptomyces roseosporus NRRL 15998] gi|291354787|gb|EFE81689.1| whiK [Streptomyces albus J1074] gi|292834300|gb|EFF92649.1| two-component system, regulatory protein [Streptomyces sp. e14] gi|294327128|gb|EFG08771.1| Two component transcriptional regulator, LuxR family [Streptomyces clavuligerus ATCC 27064] gi|297159676|gb|ADI09388.1| putative luxR family regulator [Streptomyces bingchenggensis BCW-1] gi|302428478|gb|EFL00294.1| whiK [Streptomyces sp. SPB78] gi|302445211|gb|EFL17027.1| whiK [Streptomyces sp. C] gi|302460887|gb|EFL23980.1| two-component system, regulatory protein [Streptomyces himastatinicus ATCC 53653] gi|302471231|gb|EFL34324.1| two-component system, regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302476541|gb|EFL39634.1| two-component system, regulatory protein [Streptomyces griseoflavus Tu4000] gi|306883289|gb|EFN14346.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|320009036|gb|ADW03886.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] gi|326657508|gb|EGE42354.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|328884500|emb|CCA57739.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] gi|329302661|gb|EGG46551.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|332746440|gb|EGJ76881.1| putative two-component regulator [Streptomyces sp. Tu6071] Length = 203 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 2/106 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 GY+ + L V +++ L AA LT RE L+ G Sbjct: 99 RGYLHKDASRAELRATVTQALADPTWRLAPR--RLRSAEMGAAPTLTAREIQVLEGMSHG 156 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ EI +L LS TV + KL A +R A+A R+G + Sbjct: 157 RSNAEIGRELFLSEDTVKTHARRLFKKLGASDRAHAVALGFRWGLV 202 >gi|300857740|ref|YP_003782723.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300685194|gb|ADK28116.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302330034|gb|ADL20228.1| Response regulator [Corynebacterium pseudotuberculosis 1002] Length = 221 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 16/119 (13%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK----------------RSSA 170 +G+++ + L V + +LF++ Sbjct: 103 GASGFLLKDTAPEELIEAVRSVGEQSAVISPAATAKLFRRIRSGQTDKKPDGLKHINEDL 162 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L+L G ++ EIA +L +S+ TV ++G K + +R+ A+ A Sbjct: 163 IEPLTPRELEILELIAMGKSNAEIAAELFISLPTVKTHVGRVLTKTGSRDRVHAVLFAF 221 >gi|227327824|ref|ZP_03831848.1| virulence regulator [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|290454909|emb|CBJ57167.1| homologue of Erwinia virulence regulator [Pectobacterium carotovorum] Length = 204 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 1/104 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCL 182 L H G ++ TS +A + + G + E + +S L+ER+ L Sbjct: 93 LKHHVMGVILKTSPVDSIAQALKTVSMGMVCLPDDGVIYEGWSVDNSVKGKLSERQHEVL 152 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 QL G ++++I+ L +S TV ++L S +L+ NR QA Sbjct: 153 QLIASGASNKQISRTLNISAGTVKSHLESIFRRLNVRNRTQAAI 196 >gi|218438401|ref|YP_002376730.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 7424] gi|218171129|gb|ACK69862.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7424] Length = 249 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 37/65 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + LT+RE L+L G + +IAEKL ++V TV ++ + KL +R QA +A+ Sbjct: 184 ESDPLTDRELDVLELIVAGCNNAQIAEKLYITVGTVKTHVRNILNKLCVNDRTQAAVRAL 243 Query: 230 RFGYI 234 R G + Sbjct: 244 RSGLV 248 >gi|326800600|ref|YP_004318419.1| LuxR family transcriptional regulator [Sphingobacterium sp. 21] gi|326551364|gb|ADZ79749.1| two component transcriptional regulator, LuxR family [Sphingobacterium sp. 21] Length = 209 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 9/118 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL-------FKKRSSAARNLTE 176 + GY++ ++ L + + + G Q I +E+ KR++ A LT Sbjct: 94 MRNGAQGYLLKGTDKNTLITAIKMVSQGQ--QFIDKQVEIAVVNQTISGKRTTVAVKLTS 151 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L + Y+++EIA+KL LS+ TV ++ S KL+ I +A G I Sbjct: 152 REQEILALIANEYSNQEIADKLFLSIRTVESHRHSLNQKLNVKTMAGLIKEAYLRGLI 209 >gi|302540281|ref|ZP_07292623.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302457899|gb|EFL20992.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 239 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 43/113 (38%), Gaps = 10/113 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK----------KRSSAARNLT 175 GYV+ + L + V A G L + R A L+ Sbjct: 110 AGAAGYVLKQIKGSDLVSAVRTVASGQSMLDPATTARLMRTLRGDDTPQEPRDEALAGLS 169 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 RE L L G+G T+ +I ++L LS TV ++ KL RIQA A Sbjct: 170 PREREILALIGEGLTNRQIGKRLFLSEKTVKNHISRLLAKLGVERRIQAAVLA 222 >gi|291300526|ref|YP_003511804.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569746|gb|ADD42711.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 224 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 47/127 (37%), Gaps = 18/127 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----------------KK 166 L GY+ + +A + GA Q+ D Sbjct: 95 LKAGARGYLTKDAGGEEIAAAIAAVRDGAA-QLAPDVQRRLVDALASGDKTDTSEPAKPP 153 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R+ LT+RE+ L L G ++ EIA +L +S TV ++ + K +R QA+ Sbjct: 154 RTDLPDGLTKRESEVLTLIAAGRSNAEIARQLYISEATVKTHINNLFTKAALRDRAQAVT 213 Query: 227 KAIRFGY 233 A R G Sbjct: 214 YAYRHGL 220 >gi|258650856|ref|YP_003200012.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554081|gb|ACV77023.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 228 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKR---SSAARN 173 L G+V+ + L V A G Q+I +F S + Sbjct: 98 LRAGATGFVLKDAAPTELVAAVRAVAAGEAWLDPAVARQLIDEFASHTPADLPGPSELQA 157 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L L G ++ EI++ L + T ++ KL +R QA+A A + G Sbjct: 158 LTAREREVLVLIAHGLSNAEISDHLVVGEGTTKTHVNRIFNKLGLRDRAQAVAMAYKSGL 217 Query: 234 I 234 + Sbjct: 218 L 218 >gi|187926842|ref|YP_001893187.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|241665171|ref|YP_002983530.1| LuxR family transcriptional regulator [Ralstonia pickettii 12D] gi|187728596|gb|ACD29760.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12J] gi|240867198|gb|ACS64858.1| two component transcriptional regulator, LuxR family [Ralstonia pickettii 12D] Length = 218 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSA----AR 172 L GY++ E L + A G +++ F K +A Sbjct: 95 LRDGARGYLLKNIEAETLVAGIRRAAAGEPVISDRMTAKLVAHFRAPEKAPPAATTPMPD 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE ++ G +++EIA L ++ TV ++ + KL+ +R+Q A+ G Sbjct: 155 RLTPREREIVKGLARGESNKEIARTLDVAESTVKIHVQNVLKKLNLTSRVQVAVYAVEHG 214 Query: 233 Y 233 Sbjct: 215 L 215 >gi|56962495|ref|YP_174221.1| two-component response regulator of nitrate reduction [Bacillus clausii KSM-K16] gi|56908733|dbj|BAD63260.1| two-component response regulator of nitrate reduction [Bacillus clausii KSM-K16] Length = 215 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------L 174 L GYV+ + L + + G Y Q+ T + F K+ S L Sbjct: 94 LKNGAAGYVLKNAPDDELLSAIRTVHSGGTYIHPQMATSLVREFIKKDSERAEQDLFNGL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++RE L L G+ ++EIAEKL +SV TV A+ KL+ +R + + A++ + Sbjct: 154 SQREVEILPLIAKGFGNKEIAEKLYVSVKTVEAHKAKIMEKLNLKSRPELVEYALKKKLL 213 >gi|284046827|ref|YP_003397167.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283951048|gb|ADB53792.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 215 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 4/114 (3%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNL-TERETS 180 G Y+ ++ +A+ + A G + + R R L T RE Sbjct: 101 GAGAAAYLSKEADRAQIADAIAAVARGETVLSPEAQAGIAAEVRSRQVEDRPLLTPRELE 160 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G + EIA + LS TV +L S KL +R A+A+A+R G + Sbjct: 161 VLGHVAAGRGAPEIARLIHLSPATVKGHLQSLYEKLGVSDRAAAVAEAMRRGLL 214 >gi|290955012|ref|YP_003486194.1| luxR family two-component response regulator [Streptomyces scabiei 87.22] gi|260644538|emb|CBG67623.1| putative luxR family two-component response regulator [Streptomyces scabiei 87.22] Length = 230 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 9/115 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE--LFKKRSSAARNLTE 176 +GYV+ L + V A G A +++ + ++ A LT Sbjct: 107 AGASGYVLKQIRGSDLVSAVRTVAAGQSLLDPSATARLMARLRQGPQEEREPEALPGLTG 166 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L L G+G T+ +I ++L L+ TV ++ KL R+QA A + Sbjct: 167 REREILALIGEGLTNRQIGQRLFLAEKTVKNHISRLLAKLGVERRVQAAVIATQA 221 >gi|62249408|gb|AAX77679.1| ExpR [Pectobacterium carotovorum subsp. carotovorum] gi|84620011|gb|ABC59304.1| quorum-sensing transcriptional regulator [Pectobacterium carotovorum subsp. carotovorum] Length = 242 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 69/195 (35%), Gaps = 26/195 (13%) Query: 62 GDIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSGQLS--VRLEGGL 112 P+ + Y ++ H + +L P W ++ VI + QL+ L Sbjct: 48 SSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSW---EKSLVINTRLQLAKIFDLSKKY 104 Query: 113 LPFAGIAFPVRLGFHKNGYVI-------------FTSEFLMLANEVIIEAHGACYQVITD 159 G F + + F E ++I+A+ + + Sbjct: 105 NIINGYTFVLHDHGDNLAMLSIIVDSSYPDDVDTFIEEKKDTFQMLLIDAYEKIISLCRE 164 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +E KK+ + ++RE L A G T E+A LG+ TV ++G+ KL + Sbjct: 165 MIE-SKKQLNNKEIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVL 223 Query: 220 NRIQAIAKAIRFGYI 234 N AI + I Sbjct: 224 NAKHAIRLGVELQLI 238 >gi|29832411|ref|NP_827045.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29609530|dbj|BAC73580.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 210 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ LA + G + D S+ LT RE L+ + Sbjct: 105 AGAAGFLVKDGPVEDLAAAIRRVLTGET---VIDPALAAAALSAGPNPLTARECDVLKAS 161 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T +IA KL LS TV YL SA K NR++A+ +A + G++ Sbjct: 162 VDGATVADIAAKLRLSESTVRNYLSSAIGKTGTRNRMEAMREARQQGWL 210 >gi|23465503|ref|NP_696106.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|239621956|ref|ZP_04664987.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] gi|23326161|gb|AAN24742.1| response regulator of two-component system [Bifidobacterium longum NCC2705] gi|239515147|gb|EEQ55014.1| response regulator [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 248 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 27/136 (19%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLE---------------- 162 +G+++ +E L N + A A ++I +E Sbjct: 113 AGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGAHGNSTA 172 Query: 163 ----LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LT+RE L G +++EIA+KL +S+ TV ++ K++A Sbjct: 173 SSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINA 232 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA+ A + Sbjct: 233 RDRVQAVVFAYENHLV 248 >gi|51892161|ref|YP_074852.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51855850|dbj|BAD40008.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 206 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY+ T+ F +A+ V A G V+ K L E E + L+ Sbjct: 98 LAMGASGYIPKTASFAEIASAVRTAAQGG---VVIHPSLAGKLAGRGEETLREEEIAMLR 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +G + EI +L LS TV ++ K+ NR QA+A+A+R G + Sbjct: 155 MLAEGASYAEIGNRLYLSERTVRRHMNLLFDKMGVQNRTQAVAEAMRRGLL 205 >gi|320095298|ref|ZP_08026990.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] gi|319977771|gb|EFW09422.1| DNA-binding response regulator [Actinomyces sp. oral taxon 178 str. F0338] Length = 222 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ + LA+ V A G +V+ L + + S LTERE+ L+ Sbjct: 115 LDAGATGFMVKDAPVDQLADAVRRVAKG--LRVVDPTLAV-ETLSRGTSPLTERESDVLR 171 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T +IA ++ LS TV ++ SA +K +A R +A+ A G++ Sbjct: 172 AVSTGGTIADIAREMRLSQGTVRNHVSSAMLKTEARTRAEAVRIATESGWL 222 >gi|225352800|ref|ZP_03743823.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156407|gb|EEG69976.1| hypothetical protein BIFPSEUDO_04432 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 248 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 53/136 (38%), Gaps = 27/136 (19%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLE---------------- 162 +G+++ +E L N + A A ++I +E Sbjct: 113 AGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGRPENSAT 172 Query: 163 ----LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +LT+RE L G +++EIA+KL +S+ TV ++ K++A Sbjct: 173 TSTTDSTYTDPELDDLTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINA 232 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA+ A + Sbjct: 233 RDRVQAVVFAYENHLV 248 >gi|298248902|ref|ZP_06972706.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546906|gb|EFH80773.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLE--------LFKKRSSAAR 172 L GY++ S + + A G +++ L+ ++ Sbjct: 97 LQAGVRGYLLKDSGLETVLQAIERAARGEMLLQPELMQRVLDYAARRAAPASPPPGNSNV 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G S+EI +LG++ TV +YL S KL+ +R A+A AI G Sbjct: 157 QLTEREQEVLAGIAAGERSKEIGARLGITRRTVESYLNSIYTKLNVDSRAAAVAVAIERG 216 Query: 233 YI 234 + Sbjct: 217 LL 218 >gi|302521952|ref|ZP_07274294.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces sp. SPB78] gi|302430847|gb|EFL02663.1| LOW QUALITY PROTEIN: two-component system response regulator [Streptomyces sp. SPB78] Length = 194 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR---- 172 L G+++ T+E L V A G +++ +F R A Sbjct: 74 LRAGAAGFLLKTAEAGELVAAVRTVAAGDGVVDPAVTRRLLAEFARGGTGRERPAPEGLA 133 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G+G + EIAE++ ++ TV +++ KL NR+QA A G Sbjct: 134 RLTPREREVLSCLGEGLGNAEIAERIDVAEGTVKSHVRRLLAKLGLRNRLQASLLARDLG 193 Query: 233 Y 233 Sbjct: 194 L 194 >gi|329939783|ref|ZP_08289084.1| response regulator [Streptomyces griseoaurantiacus M045] gi|329301353|gb|EGG45248.1| response regulator [Streptomyces griseoaurantiacus M045] Length = 208 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV---ITDFLELFKKRSSAAR------NL 174 L + + L + + + GA + L L S A L Sbjct: 74 LRVGVRAVLSPDASPDELIHVLRTVSAGAAIVMPEEARPSLHLLPDIVSPAPATGLLATL 133 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE+ + L G ++ EIAEK+ ++ TV +++ KL R QA+A A G I Sbjct: 134 TPRESEVIVLLAQGKSNVEIAEKMSITTATVRSHVHHLLRKLGVGTRAQAVAFAYESGLI 193 Query: 235 C 235 Sbjct: 194 S 194 >gi|311112763|ref|YP_003983985.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] gi|310944257|gb|ADP40551.1| DNA-binding response regulator [Rothia dentocariosa ATCC 17931] Length = 208 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G+V+ LA V A G +V+ L K + LT RET L+ Sbjct: 101 LEAGASGFVVKDGTASQLAQAVRRTAAG--LRVVDSVLAEEAKWQ-GSSPLTGRETEVLR 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A + +EIA LGLS TV +L +A K+DA+NR +A+ A G++ Sbjct: 158 AAETAGSVKEIAGMLGLSSGTVRNHLSAAMAKIDAINRHEAVRIARDNGWL 208 >gi|320009015|gb|ADW03865.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 231 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + V G ++ L+ F + LT+RE Sbjct: 116 GARGYVTKTITGTDLIDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 175 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 176 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 231 >gi|298250464|ref|ZP_06974268.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297548468|gb|EFH82335.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLE--------LFKKRSSAAR 172 L GY++ S + + A G +++ L+ ++ Sbjct: 97 LQAGVRGYLLKDSGLETVLQAIERAARGEMLLQPELLQRVLDYAARRAAPASPPPGNSNV 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L G S+EI +LG++ TV +YL S KLD +R A+A AI G Sbjct: 157 QLTEREQEVLAGIATGERSKEIGARLGITRRTVESYLNSIYTKLDVDSRAAAVAVAIERG 216 Query: 233 YI 234 + Sbjct: 217 LL 218 >gi|291575300|gb|ADE10225.1| LigR1 [Actinoplanes liguriensis] Length = 217 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L G+++ S+ L V A G + + L + + AA N Sbjct: 92 LRGGACGFLLKDSQPEQLVAAVRALASGVTVLAPEASSIMLGAACRGTPAAENAVDEVKQ 151 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE + L L G G T+ EIA +L +S TV Y+ KL NR+QA A G Sbjct: 152 LSDREQAVLGLIGQGLTNAEIAGRLFISDSTVKEYVSVILRKLGVANRVQAAVLAYAAGL 211 >gi|322421400|ref|YP_004200623.1| LuxR family two component transcriptional regulator [Geobacter sp. M18] gi|320127787|gb|ADW15347.1| two component transcriptional regulator, LuxR family [Geobacter sp. M18] Length = 216 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKR-SSAARNLT 175 L NGYV+ + F LA + A G Y +I ++L+ + NL+ Sbjct: 95 LKAGANGYVLKDAAFSELATAIRAVAAGETYLPPRVTTLLIKEYLQRIPDEVPATYENLS 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE LQL DG ++EIA G+SV TV S KLD + + A+R G Sbjct: 155 AREREILQLIADGSNAKEIAFAFGVSVKTVENQRHSIMKKLDLFSIAELTKYAVRQGL 212 >gi|148654644|ref|YP_001274849.1| response regulator receiver protein [Roseiflexus sp. RS-1] gi|148566754|gb|ABQ88899.1| response regulator receiver protein [Roseiflexus sp. RS-1] Length = 471 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L+ERE L+L G T+++IA +L +S +TV +L + K+ +R +A Sbjct: 3 NDTLPQLSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMY 62 Query: 228 AIRFGYI 234 A+R G + Sbjct: 63 AVRNGLL 69 >gi|284042762|ref|YP_003393102.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946983|gb|ADB49727.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 228 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 2/112 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLELFKKRSSAARNLTERETSC 181 L GYV+ + L V + G Y + + S +LT RE Sbjct: 106 LRSGARGYVLKEAADDELVQAVRLAREGRTYLNPELGARMAAEPPPSGPPDDLTARELEV 165 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G+T+ EIA++L LS+ TV ++ K+ +R + + A+ G Sbjct: 166 LRLIALGHTNAEIAQQLFLSIRTVESHRAHIQQKVRRSSRAELVRYALDHGL 217 >gi|284041724|ref|YP_003392064.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283945945|gb|ADB48689.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 218 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG----------ACYQVITDFLEL-FKKRSSAAR 172 L G+++ + L V A G A ++ I L L SA Sbjct: 93 LRAGARGFLLKHASAGDLVAAVRAVAAGDMLLSPAATRALFERIAPMLHLDAAPPPSALG 152 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L+L G ++ EIA +L +S TV ++ KL +R+QA+ A G Sbjct: 153 ELTERELDVLRLLARGLSNGEIAAQLFVSGATVKTHVSHLLRKLCLRDRVQAVVFAYDSG 212 Query: 233 YI 234 + Sbjct: 213 LV 214 >gi|161502599|ref|YP_001569710.1| transcriptional regulator NarP [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863946|gb|ABX20569.1| hypothetical protein SARI_00645 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 214 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A+G + + ++L E F + LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSERVNEYLRERERFGAQEDPFSILTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|296268635|ref|YP_003651267.1| LuxR family two component transcriptional regulator [Thermobispora bispora DSM 43833] gi|296091422|gb|ADG87374.1| two component transcriptional regulator, LuxR family [Thermobispora bispora DSM 43833] Length = 212 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + + A G ++ L+ F + +LT+RE Sbjct: 97 GARGYVTKTISGPELTDAIHRVADGDAVFSPRLAGFVLDAFASTPAPPIDPELDSLTQRE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV ++ S KL NR + A + Sbjct: 157 REVLRLIARGYAYKEIAKELFISVKTVETHVSSVLRKLQLSNRHELSRWASARRLV 212 >gi|302559531|ref|ZP_07311873.1| two-component system response regulator TcsR2 [Streptomyces griseoflavus Tu4000] gi|302477149|gb|EFL40242.1| two-component system response regulator TcsR2 [Streptomyces griseoflavus Tu4000] Length = 202 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 3/112 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ + L + V GA +VI L + LTERE L Sbjct: 94 LDAQVAGFLPKDASPDELLDGVRRV--GAGRRVIDPELAMA-AWEVGDSPLTEREVEVLA 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G + +IA LSV TV YL + KL A NR+ A+ A G++ Sbjct: 151 RVAEGADTTQIAATTSLSVGTVRNYLTTIVNKLGARNRVDALRIARDNGWLA 202 >gi|228474840|ref|ZP_04059571.1| transcriptional regulatory protein DegU [Staphylococcus hominis SK119] gi|314935685|ref|ZP_07843037.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] gi|228271503|gb|EEK12871.1| transcriptional regulatory protein DegU [Staphylococcus hominis SK119] gi|313656250|gb|EFS19990.1| DNA-binding response regulator, LuxR family [Staphylococcus hominis subsp. hominis C80] Length = 217 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 54/122 (44%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L GY++ S L V G Y ++ +F+ + + A + Sbjct: 94 LRNGAKGYILKNSPDEQLILAVRTVYKGETYIDMKLTTSLVNEFVNVSNQDEKATNDPFK 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L GY ++EIAEKL +SV TV A+ KL+ ++ + + A++ Sbjct: 154 ILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLNLKSKPELVEYALKKK 213 Query: 233 YI 234 + Sbjct: 214 LL 215 >gi|224369516|ref|YP_002603680.1| TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein [Desulfobacterium autotrophicum HRM2] gi|223692233|gb|ACN15516.1| TRAP-type C4-dicarboxylate transporter, periplasmic solute-binding protein [Desulfobacterium autotrophicum HRM2] Length = 219 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 10/122 (8%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNL- 174 L +GY+I S L + G C+ +VI ++++ + S R L Sbjct: 95 TLRAGASGYLIKRSAPTDLIKAIHAAHAGDCFLSPSISKKVIKNYVQQKQGLSLEPRGLD 154 Query: 175 --TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 + RE LQL +G+ + EIA L +S TV A+ KL + AIR G Sbjct: 155 LLSAREREVLQLIAEGHANREIAGHLYISPKTVEAHRNHIQKKLGLNGTAELTKYAIRKG 214 Query: 233 YI 234 + Sbjct: 215 LV 216 >gi|209863940|gb|ACI88885.1| AlnR6 two component response regulator [Streptomyces sp. CM020] Length = 218 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L +G+++ + L + A G + ++ F Sbjct: 94 LRAGASGFLLKDALPDELTAGIRAVASGDAVIAPGLTRKLIDAFSAHLPGTTPAQDRQLT 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G+++ EIA + L+ TV +++ K+ A +R+QA+ A G Sbjct: 154 ALTTREREVLTAIATGWSNTEIANRFSLAESTVKSHVSHILAKIGARDRVQAVIFAYDMG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|297192036|ref|ZP_06909434.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|197719515|gb|EDY63423.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 227 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAAR---- 172 L G+++ +E L V A G ++I +F RS+ A Sbjct: 105 LRAGAAGFLLKNTEAGDLLQAVRTVARGEGMIAPAVTRRLIAEFAAPGPVRSADAPDPAV 164 Query: 173 --NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G+G ++ EIA +L ++ TV ++ KL+ +R+QA A Sbjct: 165 LDTLTRREREVLSCLGEGMSNAEIAARLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQE 224 Query: 231 FGY 233 G Sbjct: 225 LGI 227 >gi|282861654|ref|ZP_06270718.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563470|gb|EFB69008.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 210 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ LA V G + + D + LT RE L A Sbjct: 105 AGAVGFLVKDGPVEDLAKAVRRVLGG---ETVIDPALAAAALGAGPSPLTARERDALNAA 161 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T +IA KL LS TV YL SA K NR++A+ A + G++ Sbjct: 162 VDGATVADIAAKLHLSESTVRNYLSSAIGKTGTRNRMEAVRAARQQGWL 210 >gi|159036019|ref|YP_001535272.1| LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157914854|gb|ABV96281.1| transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 195 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 9/126 (7%) Query: 116 AGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-------S 168 A ++F +R + TSE LA V L+L R + Sbjct: 72 ADVSFALR--AGVRAMLSITSEPEKLAAAVHATNQSEGRMPSEVLLKLLHSRVAGNPVST 129 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + LT R+T+ L L DG+ + IA L S HTV + ++L NR A+A+A Sbjct: 130 PSPSPLTPRQTAVLNLMADGHPNVAIATALSCSEHTVKNVIYDMMMRLQVNNRAHAVARA 189 Query: 229 IRFGYI 234 IR G I Sbjct: 190 IRAGLI 195 >gi|284029937|ref|YP_003379868.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283809230|gb|ADB31069.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 219 Score = 93.5 bits (231), Expect = 2e-17, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 7/116 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN----LTE 176 L +G+++ S +L V G QV LE + R S LT+ Sbjct: 100 LQHGASGFLLKRSGPNLLVEAVRAAVSGDTLISPQVTVRLLEQLRHRRSGPLPDKAALTD 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE L G G ++ EIA +L +SV TV ++ + KL A +R+ A A + G Sbjct: 160 REREITMLVGRGLSNAEIATELFISVGTVKTHVANIQRKLSARSRVGIAAWAWQTG 215 >gi|317405306|gb|EFV85631.1| nitrate/nitrite response regulator protein [Achromobacter xylosoxidans C54] Length = 223 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA--------- 171 L GY++ + L + + A G + +E F+ ++S A Sbjct: 95 LRDGARGYLLKNIDAEALTSAIRRAAAGEPVIAESMTAKLVEQFRGQASLAAQAPAGQAE 154 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE +Q G +++ IA +L +S TV ++ + KL+ +R+Q A+ Sbjct: 155 RHRLTARERQIVQCLARGASNKVIARELDVSESTVKIHVQNVLKKLNLTSRVQVAVYAVE 214 Query: 231 FGY 233 G Sbjct: 215 HGL 217 >gi|300782102|ref|YP_003762393.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299791616|gb|ADJ41991.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 208 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 4/110 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY----QVITDFLELFKKRSSAARNLTERETSC 181 GY++ + N V A G ++ + LTERE Sbjct: 97 AGAAGYLLKQVRGQDVVNAVREVAAGRSLLDPVSTARVLDKMRHPPTDELATLTERERDV 156 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+L G G ++ EIAE+L L+ TV Y+ S KL R QA A +R Sbjct: 157 LELIGQGLSNREIAERLFLAEKTVKNYVTSVLAKLGMQRRTQAAAWIVRR 206 >gi|297195101|ref|ZP_06912499.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297152625|gb|EFH31883.1| two-component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 218 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN-----LT 175 L G+++ + L V + A + + +R + LT Sbjct: 97 LRAGAAGFLLKRAGADELVQAVRLVARSDSLLFPAAVRSLAAEYGRREAVTAPPWVARLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L+L G T+ EIA ++G+ T ++ + K+ A +R QA+ A G+I Sbjct: 157 GREAEVLRLMATGLTNAEIAGRMGVGPATTKTHVAAVLGKIGARDRTQAVIAAYESGFIS 216 >gi|256394854|ref|YP_003116418.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361080|gb|ACU74577.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 232 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 18/122 (14%) Query: 132 VIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA---------------RN 173 ++ + L + A G ++ +E F +++ A Sbjct: 102 LLKNAHPADLIAGIRTVAAGDGVVAPRITRQLIEAFARQTDPAATAAGPRADERLERLER 161 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G ++ EIAE L LS TV ++ KL+ +R+QA+ A G Sbjct: 162 LTDREREVLVEIARGQSNAEIAETLHLSEATVKTHVSRILPKLELRDRVQAVVFAYEIGL 221 Query: 234 IC 235 + Sbjct: 222 VA 223 >gi|163751528|ref|ZP_02158750.1| DNA-binding nitrate/nitrite response regulator [Shewanella benthica KT99] gi|161328536|gb|EDP99689.1| DNA-binding nitrate/nitrite response regulator [Shewanella benthica KT99] Length = 209 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAAR---NLTERETS 180 +GY++ +E +L ++ H + + D+L K NLT RE Sbjct: 99 AGADGYLLKDTEPDLLLEKLKQAMQGHRVISESVEDYLYELKDAIDEKDWIDNLTPRELQ 158 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LQL G ++ I+E+L +S TV ++ + K +A +R + + Sbjct: 159 ILQLVAQGMSNRTISEQLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205 >gi|152986923|ref|YP_001348902.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gi|150962081|gb|ABR84106.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 924 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 39/72 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + K + + LTERE + LA G ++EEI ++L L++ TV +L + KL NR Sbjct: 853 VRKPQDALEEGLTEREREVVCLAAQGLSNEEIGQRLSLALGTVKWHLHNIYEKLKVRNRT 912 Query: 223 QAIAKAIRFGYI 234 QAI +A + Sbjct: 913 QAIRRARELSLL 924 >gi|220932886|ref|YP_002509794.1| regulatory protein LuxR [Halothermothrix orenii H 168] gi|219994196|gb|ACL70799.1| regulatory protein LuxR [Halothermothrix orenii H 168] Length = 887 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 6/113 (5%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA------ARNLTERETSCL 182 GY + + +++ E IT LE F + S L+ERE L Sbjct: 767 EGYTRAFLDEGEVIYKLLSEVKDVSPAFITGILEAFDFKKSTFNNQNLIEPLSERELEIL 826 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L +G +++EIA+KL ++V T ++ + KL R QAI KA++ I Sbjct: 827 GLIVNGLSNKEIAKKLYITVGTTKWHISNIYGKLGVNKRAQAIKKALQLELIA 879 >gi|307328684|ref|ZP_07607856.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306885633|gb|EFN16647.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 228 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ LA + G + + D S+ LT+RE L A Sbjct: 123 AGAAGFLVKDGPVEELAVAIRRVLAG---ERVIDPGLAAAALSAGPNPLTQRERDVLSAA 179 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T +IA K+ LS TV YL SA K NR++A+ A + G++ Sbjct: 180 VDGATVADIAAKVHLSPATVRNYLSSAIGKTQTRNRMEAVRAARQNGWL 228 >gi|297159346|gb|ADI09058.1| putative two component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 233 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRS-------- 168 L G+++ L + G +++ F + + Sbjct: 95 LKAGAGGFMLKDVPPGELLAAIRAVHSGDAVVAPSTTRRLLDRFAPMLPGAAGGTGPGGS 154 Query: 169 --SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE + L G ++ EIA +L LS TV ++G KL+ +R+Q + Sbjct: 155 ARPELERLTDREREVMLLVAQGLSNGEIAARLVLSEATVKTHVGRILTKLELRDRVQVVV 214 Query: 227 KAIRFGYI 234 A G + Sbjct: 215 MAYESGLV 222 >gi|159184353|ref|NP_353554.2| LuxR family transcriptional regulator [Agrobacterium tumefaciens str. C58] gi|159139669|gb|AAK86339.2| transcriptional regulator, LuxR family [Agrobacterium tumefaciens str. C58] Length = 226 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 1/103 (0%) Query: 132 VIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTS 191 ++ E + + E + E ++ F + ++ +LTERE CL +G TS Sbjct: 125 LLLFPEEAVPSPERLREIALLTGYCVS-FGIASEAKTVRDIDLTERELECLFWIAEGKTS 183 Query: 192 EEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EIA LG+S +T+N Y+ S K R +AIA A+R + Sbjct: 184 DEIAMILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNNLV 226 >gi|296133351|ref|YP_003640598.1| two component transcriptional regulator, LuxR family [Thermincola sp. JR] gi|296031929|gb|ADG82697.1| two component transcriptional regulator, LuxR family [Thermincola potens JR] Length = 226 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 8/119 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN-----LTE 176 +G ++ L + + G + L+ K + L Sbjct: 97 SAGVDGLLLKQFNSEELIRSIHMVLEGKALLDPSITNKVLDRVKNGQPKPQPKDVALLNP 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +E L L +G T++EIA+ L LS +T+ Y+ KL+ NR +A A A+R + Sbjct: 157 QERRILGLIAEGKTNKEIAQILTLSNNTIKNYVSGILSKLNFSNRAEAAAYAVRNNLMA 215 >gi|21218760|ref|NP_624539.1| LuxR family two-component response regulator [Streptomyces coelicolor A3(2)] gi|5777679|emb|CAB53428.1| putative luxR family two-component response regulator [Streptomyces coelicolor A3(2)] Length = 233 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 10/116 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK-------KRSSAARNLT 175 GYV+ + L + V A G T + + + LT Sbjct: 108 AGAAGYVLKQIQGSDLVSAVRTVARGQSLLDASATTKLMARLRGGGQQPVEEPEMLPGLT 167 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +RE L+L G+G T+ +I ++L L+ TV ++ KL RIQA A + Sbjct: 168 DREREILELIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQA 223 >gi|329938783|ref|ZP_08288179.1| two component system response regulator [Streptomyces griseoaurantiacus M045] gi|329302274|gb|EGG46166.1| two component system response regulator [Streptomyces griseoaurantiacus M045] Length = 212 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I H + + S+ LT RE L+ Sbjct: 105 LEAGVRGFVSKTVSAQRLA-EIIRTVHAGNRYIDPELAA--DAISTGDSPLTAREAEVLE 161 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG EIAE+ L+ TV YL SA KL NR A+ A G++ Sbjct: 162 FAADGAPVAEIAERAALAEGTVRNYLSSAVSKLGVENRHAAVRLAREHGWV 212 >gi|29830013|ref|NP_824647.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607123|dbj|BAC71182.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 243 Score = 93.1 bits (230), Expect = 2e-17, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L N V G ++ L+ F + LT+RE Sbjct: 128 GARGYVTKTITGTDLVNSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 187 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 188 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 243 >gi|299140030|ref|ZP_07033200.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298598030|gb|EFI54198.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 209 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + L + + H ++ + + + A L+ RET L+ Sbjct: 99 LEAGAVGYLLKSMLRTELIDTIRGV-HAGQRRIPREIADEIAEHI-GADALSARETEVLR 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G +++ +A++L +S TV ++ S KL A +R A+ A++ G++ Sbjct: 157 VVASGCSNKIVADRLAISEETVKGHIKSVLAKLCANDRTHAVMIAMKRGFL 207 >gi|290958054|ref|YP_003489236.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260647580|emb|CBG70685.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 297 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + + G ++ L+ F + LT+RE Sbjct: 182 GARGYVTKTITGTDLVDSIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 241 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 242 REVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 297 >gi|254387494|ref|ZP_05002733.1| response-regulator protein [Streptomyces clavuligerus ATCC 27064] gi|294815121|ref|ZP_06773764.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326443484|ref|ZP_08218218.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197701220|gb|EDY47032.1| response-regulator protein [Streptomyces clavuligerus ATCC 27064] gi|294327720|gb|EFG09363.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 230 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKR------SSA 170 L +G+++ +E L V A G ++I +F + R S Sbjct: 108 LRAGASGFLLKNTEAADLLAAVRTVARGEGLIAPAVTRRLIAEFAAPRRVRGPGGPDPSV 167 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G+G ++ EIA +L ++ TV ++ KL+ +R+QA A Sbjct: 168 LDVLTRREREVLSAVGEGLSNAEIAVRLSMAEATVKTHVSRLLNKLELRSRVQAAVLAQE 227 Query: 231 FGY 233 G Sbjct: 228 LGI 230 >gi|220906824|ref|YP_002482135.1| two component LuxR family transcriptional regulator [Cyanothece sp. PCC 7425] gi|219863435|gb|ACL43774.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7425] Length = 217 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 11/115 (9%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF----------KKRSSAARNLTE 176 GY++ + LA + H Q+ LE LT Sbjct: 101 GARGYLLKDTHSDDLAAAIRAV-HRGYTQMGPGLLEKAIAPPAVSSTPPPLPPELAGLTP 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L L G ++ EIAE L +S TV ++ +L +R QA A RF Sbjct: 160 REREVLSLIVAGASNREIAEALYISERTVKNHISRILSQLHLRDRTQAAMFASRF 214 >gi|166368199|ref|YP_001660472.1| transcriptional regulator [Microcystis aeruginosa NIES-843] gi|166090572|dbj|BAG05280.1| transcriptional regulator [Microcystis aeruginosa NIES-843] Length = 93 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 42/73 (57%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + A +L++RE L L +G T++EI+EKL +S TV+ ++ + K NR+ Sbjct: 1 MSAAKFQTAASLSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRV 60 Query: 223 QAIAKAIRFGYIC 235 + + A+ +G +C Sbjct: 61 ELVRWALHWGKVC 73 >gi|148977018|ref|ZP_01813664.1| response regulator [Vibrionales bacterium SWAT-3] gi|145963678|gb|EDK28939.1| response regulator [Vibrionales bacterium SWAT-3] Length = 210 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 5/111 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L E++ +AH A V+ +L R+ LTERE L Sbjct: 98 AGADGYLLKDTEPDELI-ELLKQAHSGDKAYSSVVARYLNDAGSRNDIFDQLTEREMQIL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFG 232 Q GY +++IA+ L +S TV ++ S KL +R A + R+G Sbjct: 157 QEVAKGYRNKQIADHLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERYG 207 >gi|118722505|gb|ABL09961.1| regulator [Streptomyces echinatus] Length = 202 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ + LA+ + A G Q + + S A LT RET L+ Sbjct: 94 LEQQVDGYLLKDAPPAALADAIRKVAGG---QRVIAPGLMLAAWESRANPLTPRETEILR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G + ++A+ LS TV +L S KL A +R+ A+ A G++ Sbjct: 151 WASEGGSVRDVADAARLSPGTVRNHLSSIVTKLGARSRLDAVRIAQDAGWL 201 >gi|21240910|ref|NP_640492.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] gi|21106187|gb|AAM35028.1| two-component system regulatory protein [Xanthomonas axonopodis pv. citri str. 306] Length = 210 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLEL---FKKRSSAARNLTERETS 180 G+++ + L + A G V TD + F+ + + +ERE + Sbjct: 97 AGAQGFLLKDAAPEDLREAIERVAAGDTLLQPVSTDPVRARYQFRDQQAPRETFSEREVA 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY+++EIA L L+ TV Y+ + KL +R +A+ KAI I Sbjct: 157 ILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGIRDRTRAVLKAITLRVI 210 >gi|299140322|ref|ZP_07033486.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298597710|gb|EFI53884.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 200 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 52/111 (46%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + Y++ + + + G + + + +LT RE L Sbjct: 90 LRAGASAYMLKSMPKAEILAAIRSVHDGG--RCVPPEVAAKIAMHLGGEHLTVRELEVLA 147 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L DG+ ++++A+ LG++ TVN ++ + KL A +R A+A A+R G++ Sbjct: 148 LIRDGHANKQVADILGIAETTVNFHISNLVKKLKANDRTHAMAIAVRRGFL 198 >gi|253997049|ref|YP_003049113.1| LuxR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983728|gb|ACT48586.1| transcriptional regulator, LuxR family [Methylotenera mobilis JLW8] Length = 243 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 5/119 (4%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----KKRSSAARNL 174 P+ +G G + + + L L+ +I + + K + +L Sbjct: 123 IPIAIGQQSVGLIALSGQNLQLSPHELITLQSISGILGLALKQASSMSAEDKDLTVIEHL 182 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L G ++ E+A KLG+S TV ++ KL+ +R QA KA GY Sbjct: 183 TPREREVFALLPSGLSNRELATKLGISAGTVKIHVERVLSKLNLRDRTQAAVKAYELGY 241 >gi|320450528|ref|YP_004202624.1| two component transcriptional regulator, LuxR family [Thermus scotoductus SA-01] gi|320150697|gb|ADW22075.1| two component transcriptional regulator, LuxR family [Thermus scotoductus SA-01] Length = 209 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETS 180 L GYV + L + V+ A G Y + + L+ RE Sbjct: 94 LQAGGQGYVSKAAVDQELLDAVLALARGERYLNPALAMRLAMEIVREEGEEEPLSPREEE 153 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G + +E+AE L +S TV Y KL +R + A++ G++ Sbjct: 154 VLRLLAKGLSHKEVAEHLSISEKTVATYRERGMEKLGLKSRSDLLRYAVKRGWL 207 >gi|18699286|gb|AAL78509.1|AF456804_1 probable transcriptional activator TraR [Sinorhizobium meliloti] gi|38374154|gb|AAR19282.1| TraR [Sinorhizobium meliloti] Length = 234 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 57/186 (30%), Gaps = 11/186 (5%) Query: 60 DSGDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGL 112 P Y D + W + S + Sbjct: 49 TFNSYPGSWEGIYLGSDYSSIDPVVTEAKRRGDVFFWTADDWPARGSSPLRRFRDEAIDH 108 Query: 113 LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 G+ PV + + F S + ++ A V+T L + A Sbjct: 109 GIRCGVTMPVEGSYGSAMMLTFASPERNIDISGALDPKKAIQMVMTVHYRLKMIAAKTAV 168 Query: 173 N----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 N L+ RE CL A G T+ E A G++ TV YL A KL A + Q +A A Sbjct: 169 NPKQMLSPREMLCLVWATRGKTAPETAMLTGINPRTVQHYLDKARAKLGAESVPQLVAIA 228 Query: 229 IRFGYI 234 G + Sbjct: 229 KDRGLV 234 >gi|213850302|ref|ZP_03381200.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 217 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A+G + ++L E F + LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVNEYLRERERFGAQEDPFSILTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|212716971|ref|ZP_03325099.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM 16992] gi|212660256|gb|EEB20831.1| hypothetical protein BIFCAT_01917 [Bifidobacterium catenulatum DSM 16992] Length = 248 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 27/136 (19%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLE---------------- 162 +G+++ +E L N + A A ++I +E Sbjct: 113 AGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGAHGNSTA 172 Query: 163 ----LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LT+RE L G +++EIA+KL +S+ TV ++ K++A Sbjct: 173 SSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINA 232 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA+ A + Sbjct: 233 RDRVQAVVFAYENHLV 248 >gi|158334732|ref|YP_001515904.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158304973|gb|ABW26590.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 215 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLEL-FKKRSSAARNLT 175 L GY++ ++ LA + + G +VI K + L+ Sbjct: 94 LQAGALGYLLKSTPASQLAAAIRMLHDGHFQLGPTIAPKVIAQLRPPPLKNEQNHLERLS 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +RE L L G G ++ EI++ L L+ TV Y+ L +R QA A ++ Sbjct: 154 DRELDVLNLIGQGKSNREISQILHLTEGTVKNYVSQLLGSLGVRDRTQAALWAQQY 209 >gi|311106149|ref|YP_003979002.1| transcriptional regulator DegU [Achromobacter xylosoxidans A8] gi|310760838|gb|ADP16287.1| transcriptional regulatory protein DegU [Achromobacter xylosoxidans A8] Length = 223 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 51/125 (40%), Gaps = 15/125 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA--------- 171 L GY++ + L + A G + +E F+ ++S A Sbjct: 95 LRDGARGYLVKNIDADALTAAIRRAAGGEPVIAESMTAKLVEQFRGQASLAAQAPQAAGS 154 Query: 172 ---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RET +Q G +++ IA +L +S TV ++ + KL+ +R+Q A Sbjct: 155 AERHRLTARETQIVQWLARGASNKVIARELDVSESTVKIHVQNVLKKLNLTSRVQVAVYA 214 Query: 229 IRFGY 233 + G Sbjct: 215 VEHGL 219 >gi|302528552|ref|ZP_07280894.1| two-component system response regulator [Streptomyces sp. AA4] gi|302437447|gb|EFL09263.1| two-component system response regulator [Streptomyces sp. AA4] Length = 216 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L G+++ ++ L V + A G A +++ + ++ A R Sbjct: 94 LRAGAAGFLVKSTPPEDLIGLVRVAADGHTVLSPSAARRLVALSADGHRRDDEARRRTAG 153 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LTERE L G+G ++ +IA +L L+ TV +Y+ VKLD NR QA A G Sbjct: 154 LTERERDVLACLGEGLSNADIAARLHLAEATVKSYVSRMLVKLDCTNRTQAGLLAHEAGL 213 Query: 234 I 234 + Sbjct: 214 V 214 >gi|16761174|ref|NP_456791.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141132|ref|NP_804474.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412856|ref|YP_149931.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168229605|ref|ZP_02654663.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168236420|ref|ZP_02661478.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168818030|ref|ZP_02830030.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194471476|ref|ZP_03077460.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736026|ref|YP_002115321.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250575|ref|YP_002147204.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197361787|ref|YP_002141423.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|213028722|ref|ZP_03343169.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213051724|ref|ZP_03344602.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418242|ref|ZP_03351308.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213426294|ref|ZP_03359044.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213622209|ref|ZP_03374992.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649802|ref|ZP_03379855.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289812587|ref|ZP_06543216.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. AG3] gi|289824610|ref|ZP_06544153.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25298773|pir||AD0787 nitrate/nitrite response regulator protein NarP STY2472 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503473|emb|CAD07478.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Typhi] gi|29136758|gb|AAO68323.1| nitrate/nitrite response regulator protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127113|gb|AAV76619.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|194457840|gb|EDX46679.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711528|gb|ACF90749.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093263|emb|CAR58709.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214278|gb|ACH51675.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197290466|gb|EDY29821.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205335871|gb|EDZ22635.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344893|gb|EDZ31657.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|322615257|gb|EFY12179.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617847|gb|EFY14743.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624558|gb|EFY21389.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626991|gb|EFY23787.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634176|gb|EFY30912.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635631|gb|EFY32341.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640233|gb|EFY36897.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646344|gb|EFY42856.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649311|gb|EFY45747.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656431|gb|EFY52720.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661159|gb|EFY57386.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665703|gb|EFY61887.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667229|gb|EFY63396.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671234|gb|EFY67362.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675125|gb|EFY71202.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680733|gb|EFY76768.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686908|gb|EFY82885.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192673|gb|EFZ77900.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198895|gb|EFZ83994.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205094|gb|EFZ90072.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208137|gb|EFZ93081.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211120|gb|EFZ95970.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215837|gb|EGA00580.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221856|gb|EGA06256.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223671|gb|EGA07980.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231283|gb|EGA15398.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233716|gb|EGA17808.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237788|gb|EGA21848.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245769|gb|EGA29763.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246491|gb|EGA30470.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252610|gb|EGA36449.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255334|gb|EGA39107.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259569|gb|EGA43204.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266066|gb|EGA49559.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272760|gb|EGA56164.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 215 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A+G + ++L E F + LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVNEYLRERERFGAQEDPFSILTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|114561545|ref|YP_749058.1| two component transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] gi|114332838|gb|ABI70220.1| two component transcriptional regulator, LuxR family [Shewanella frigidimarina NCIMB 400] Length = 202 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + G+++ + L N + G +VI EL L ++E L+ Sbjct: 96 LEYGVGGFLLKDAPSEDLINAIKQVMAGK--RVIDP--ELAFTAIGEIDPLNDKERRALR 151 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA +G ++ +IA +L ++ TV YL A KL+A NRI A A + G++ Sbjct: 152 LASEGLSTSDIASQLFIAEGTVRNYLSEAISKLNASNRIDAARIAKQKGWL 202 >gi|256396212|ref|YP_003117776.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362438|gb|ACU75935.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 241 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 55/127 (43%), Gaps = 15/127 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L +G+++ + + V + A G ++I +F ++A R Sbjct: 112 LRAGASGFLVKDMALDSILDAVRVTASGDAIIAPSVTRKLIAEFAIRPDPGATAPRRGDK 171 Query: 174 -----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +T+RE L L G G ++ EIAE+L +S T A++ KL A +R+Q + A Sbjct: 172 ALLDGVTDREREVLTLVGRGLSNGEIAEELFISAATAKAHVARLFTKLGARDRVQLVITA 231 Query: 229 IRFGYIC 235 G + Sbjct: 232 YEAGLVA 238 >gi|57234510|ref|YP_181438.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57234583|ref|YP_181405.1| LuxR family DNA-binding response regulator [Dehalococcoides ethenogenes 195] gi|57224958|gb|AAW40015.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] gi|57225031|gb|AAW40088.1| DNA-binding response regulator, LuxR family [Dehalococcoides ethenogenes 195] Length = 224 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL--ELFKKRSSAARNL 174 L +++ + L + G +VI + + SA L Sbjct: 99 LEAGAASFLLKNVKGTQLLEAIRAVYAGESVLQPSTTRRVIDQLINKATKTEEVSAVNPL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+RE L++A G ++++IA++L LS T+ +L + KL +R +AI ++ G+ Sbjct: 159 TDREIEVLKMAARGVSNKDIADQLYLSNRTIQTHLSNIFKKLSVGSRTEAILYGLKRGW 217 >gi|284041315|ref|YP_003391245.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283820608|gb|ADB42446.1| two component transcriptional regulator, LuxR family [Spirosoma linguale DSM 74] Length = 219 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH----GACYQVITDFLELFKKRS-SAARNLTERETS 180 +GY+ + + ++ +++ F E ++ R LT RE Sbjct: 106 MGVSGYLSKNQDVHDIRKAILEIMRDNRPYYSQEILQSFAESVDRQPVEEIRQLTPRELE 165 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L +T+ EIA +L +S TV+ + + KL A + + AIR G + Sbjct: 166 ILKLIAQEFTTGEIANQLFISEATVDTHRRNMIQKLRAKSIVGLANFAIRHGLV 219 >gi|227508573|ref|ZP_03938622.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191905|gb|EEI71972.1| response regulator [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 209 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 3/105 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +GY++ S L + G Q I D + ++A L+++E L+ A DG Sbjct: 107 SGYLLKDSPSDDLVTAIRNVMAG---QTIYDPELVRNMVNAADNPLSDQEMVVLKSAADG 163 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T++EIAEKL LS TV YL + KL NR++A+ A + Sbjct: 164 DTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNMAKNNKW 208 >gi|218549608|ref|YP_002383399.1| transcriptional regulator NarP [Escherichia fergusonii ATCC 35469] gi|218357149|emb|CAQ89784.1| DNA-binding response regulator in two-component regulatory system with NarQ or NarX [Escherichia fergusonii ATCC 35469] gi|325498005|gb|EGC95864.1| transcriptional regulator NarP [Escherichia fergusonii ECD227] Length = 216 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ SE L + A+G ++++L E F + LTERE Sbjct: 102 DAGADGYLLKDSEPESLLAAIQKGANGGKVFSARVSEYLRERERFGSKDDPFSTLTEREL 161 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 162 DVLHELAKGLSNKQIASALNISEQTVKVHIRNLLRKLNVRSRVAA 206 >gi|73538891|ref|YP_299258.1| LuxR response regulator receiver [Ralstonia eutropha JMP134] gi|72122228|gb|AAZ64414.1| regulatory protein, LuxR:Response regulator receiver [Ralstonia eutropha JMP134] Length = 217 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------L 174 L GY++ E L + + A G + ++ F+ + A L Sbjct: 95 LRRGARGYLLKNIETEALTSAIRRAAAGEPVISEAMTAKLVQQFRAPAPAPVRQDDTAKL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE +Q G +++EIA LG++ TV ++ + KL+ +R+Q A+ G Sbjct: 155 TAREREIVQGLTRGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVERGL 213 >gi|322383770|ref|ZP_08057521.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151982|gb|EFX44925.1| two-component response regulator YvqE responding to cell wall stress-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 213 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFKKRSSAARN--LTERETS 180 YV+ T L + + G +V ++R++ LT RE Sbjct: 96 AGATSYVLKTVSSEQLIEGIHKASQGIPEMNPEVSLALTRGLRQRNAQPDEEGLTIREKE 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L DG T+++IAE+L +S+ TV ++ + +K + +R Q A R G++ Sbjct: 156 VLLLIADGKTNKDIAEELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHRKGWV 209 >gi|72160692|ref|YP_288349.1| LuxR response regulator receiver [Thermobifida fusca YX] gi|71914424|gb|AAZ54326.1| regulatory protein, LuxR:Response regulator receiver [Thermobifida fusca YX] Length = 201 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ + LA + G + D + LT RE L+ Sbjct: 94 LAAGARGFLAKDAPVDQLAGAIRTVYRGGRF---IDSELAADAMMAGENPLTAREIDVLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G + IA L LS TV YL SA KL NRI AI KA G++ Sbjct: 151 AASTGASVAAIARTLHLSEGTVRNYLSSAISKLGEANRIAAIRKANAMGWL 201 >gi|320333213|ref|YP_004169924.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754502|gb|ADV66259.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 194 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 9/109 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 Y+ + LA ++ + D L LT RE L+L Sbjct: 94 AGARAYLSKETPPQDLARQLRALMD----RPFDDHL-----PHVTVPTLTPREGDVLRLL 144 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG +++EIA LG+S TV +L VKLDA +R+ A+ KA G I Sbjct: 145 ADGQSNKEIARSLGVSPETVKEHLARMYVKLDAPDRVSALNKARTLGLI 193 >gi|318042198|ref|ZP_07974154.1| DNA-binding response regulator [Synechococcus sp. CB0101] Length = 236 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/67 (40%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LTERE LQ T+ EIA L LS+ TV +++ KLDA +R+QA K Sbjct: 164 DAPLAPLTERELEVLQRIAANATNPEIAADLFLSIETVKSHVAQVLHKLDARSRLQAAIK 223 Query: 228 AIRFGYI 234 IR G + Sbjct: 224 GIRLGLV 230 >gi|320011210|gb|ADW06060.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 229 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L +G++ +E L N + + A G +I FL A Sbjct: 98 LRAGASGFLGKGAEPEELLNAIRVAAAGEALLSPVATKGLIASFLAQGGSAGEGADAAEY 157 Query: 174 ------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L G+++++IA++L +S TV ++ A KL A +R Q + Sbjct: 158 AERLAALTGREREVLVQVAGGHSNDQIADRLVVSPLTVKTHVNRAMAKLGARDRAQLVVI 217 Query: 228 AIRFGYI 234 A G + Sbjct: 218 AYESGLV 224 >gi|302561891|ref|ZP_07314233.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] gi|302479509|gb|EFL42602.1| response regulator, two-component system [Streptomyces griseoflavus Tu4000] Length = 220 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 49/123 (39%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL--------- 174 L +G+++ + + + V + A G L + N Sbjct: 96 LRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRRLAAEYGDGDGNRAARAALERA 155 Query: 175 --TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 T RE L+L G T+ EIA KL + TV +++ + KL A +R QA+ A G Sbjct: 156 RLTGREGEVLRLMARGLTNAEIAAKLVVGTETVKSHVSAVLAKLGARDRTQAVIAAYESG 215 Query: 233 YIC 235 ++ Sbjct: 216 FVA 218 >gi|240170794|ref|ZP_04749453.1| nitrate/nitrite response regulator protein NarL [Mycobacterium kansasii ATCC 12478] Length = 214 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERET 179 L G+++ S + V+ A G ++ E+ ++ + A L+ RE Sbjct: 99 LQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPTAPVLSARER 158 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G + IA +L ++ TV ++ KL +R A+A+A+R G + Sbjct: 159 EVLNRIARGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 213 >gi|229817781|ref|ZP_04448063.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM 20098] gi|229785570|gb|EEP21684.1| hypothetical protein BIFANG_03053 [Bifidobacterium angulatum DSM 20098] Length = 248 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 27/136 (19%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLE---------------- 162 +G+++ +E L N + A A ++I +E Sbjct: 113 AGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIEKMMEGDFMAANVGAHGNSTA 172 Query: 163 ----LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LT+RE L G +++EIA+KL +S+ TV ++ K++A Sbjct: 173 SSTSDSTYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLTTVKTHVAHILSKINA 232 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA+ A + Sbjct: 233 RDRVQAVVFAYENHLV 248 >gi|74316369|ref|YP_314109.1| LuxR family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74055864|gb|AAZ96304.1| Transcriptional Regulator, LuxR family [Thiobacillus denitrificans ATCC 25259] Length = 258 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 12/162 (7%) Query: 80 FNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL 139 + + P + ++ ++ L + L+ L F G+ R+ GY F+ + Sbjct: 93 WGAKREPRLIAALTDDPDGWHRRLLDLELKN--LAFHGLC---RVDGQMWGYASFSRLRV 147 Query: 140 MLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + +V+ + A +T RE L DG T+E Sbjct: 148 PFDARLALFMELLLPHLLVTLARVLANEARTRSLGDRHAGLITAREAEVLAWVRDGKTNE 207 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA LGLS+ TV +L A KL R QA+A+AI G++ Sbjct: 208 EIAAILGLSMLTVKNHLRHAMQKLVVRTRGQAVARAIALGFL 249 >gi|296138380|ref|YP_003645623.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026514|gb|ADG77284.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 212 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-KKRSSAARN-------LTER 177 G+++ S+ + + A G + LF R S A + LTER Sbjct: 96 AGAAGFLLKESQPQFVLAAIRDVAAGNMVVAASAARHLFAHPRPSTAPHRPVEFGRLTER 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E A +G ++ EIAEK L+ TV ++ KL +R+Q + A R G + Sbjct: 156 EQQIFVRAAEGLSNAEIAEKEFLAETTVKTHVSRVLTKLGLRDRVQLVVYAHRHGLV 212 >gi|312961526|ref|ZP_07776027.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311284205|gb|EFQ62785.1| DNA-binding response regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 215 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 4/112 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA--CYQVITDFLE--LFKKRSSAARNLTERET 179 L NGY++ E ++ + GA +T L L + AA LTERE Sbjct: 99 LRLDANGYLLKDMEPELVVEFIRDALRGALVISPGLTRVLAQALRSPQPHAAVELTERER 158 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ GY+++ I KLG++ TV ++ + KL +R++A A+ Sbjct: 159 QVLKTIAGGYSNKVIGHKLGITEGTVKVHVKNLLHKLGLRSRVEAAVWAMEH 210 >gi|225022693|ref|ZP_03711885.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii ATCC 33806] gi|305682229|ref|ZP_07405033.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] gi|224944601|gb|EEG25810.1| hypothetical protein CORMATOL_02738 [Corynebacterium matruchotii ATCC 33806] gi|305658702|gb|EFM48205.1| transcriptional regulator, LuxR family [Corynebacterium matruchotii ATCC 14266] Length = 223 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 51/116 (43%), Gaps = 11/116 (9%) Query: 131 YVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK--------KRSSAARNLTERET 179 +++ E L + + + G LEL K S A LT RET Sbjct: 98 FLLKDVEPEELFDAIRLVYDGQAVLAPTATAHVLELLKHPNQPAAPTPSPAVAELTPRET 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+L G T++EIA+ +S+ TV ++ +K ++ +R+ A+ A R G + Sbjct: 158 VILRLIALGLTNQEIADHEYVSMATVKTHVRHILMKTNSRDRVHAVLFAYRTGVVS 213 >gi|304321086|ref|YP_003854729.1| putative two-component response regulator protein [Parvularcula bermudensis HTCC2503] gi|303299988|gb|ADM09587.1| putative two-component response regulator protein [Parvularcula bermudensis HTCC2503] Length = 217 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 6/113 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA------RNLTER 177 L GY++ + L E+ G + +++A LT+R Sbjct: 99 LKAGAKGYILKDTALDELCAELKTVLSGGVAIPQALLAAVLTPKAAAPPEYHLVERLTDR 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E L+L +G T++ IA +L +S TV A++ KL A +R QA +R Sbjct: 159 EREVLRLISEGKTNKAIARELVISPATVKAHVERCLAKLGAADRTQAAVMMVR 211 >gi|75910296|ref|YP_324592.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75704021|gb|ABA23697.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 237 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L DG ++ IAEKL +SV TV ++ + KL +R Q +A+R G Sbjct: 175 PLTRRELDVLKLIVDGCSNAVIAEKLYVSVGTVKTHVRNILNKLCVSDRTQIAVRALRAG 234 Query: 233 YIC 235 + Sbjct: 235 LVA 237 >gi|239988349|ref|ZP_04709013.1| two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 224 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 8/113 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN-----LT 175 L G+++ S L V + A G +V+ + K ++ A LT Sbjct: 97 LRAGAAGFLLKDSAVDELIPGVRLLAAGGSALSERVVRSLPDGAGKEAAPADPPGARLLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 RE L+L G ++EEI +L LS TV ++ S KL A NR+QA A Sbjct: 157 AREREVLELLPSGMSNEEIGRRLFLSRTTVRDHVSSLLAKLGAANRVQAAVIA 209 >gi|226940995|ref|YP_002796069.1| NarL [Laribacter hongkongensis HLHK9] gi|226715922|gb|ACO75060.1| NarL [Laribacter hongkongensis HLHK9] Length = 218 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 8/112 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR-----NLTERE 178 GY++ L + + G ++ + + AA +LT RE Sbjct: 100 GARGYLLKNINAEFLLSSIRRAVTGDSVLSPEMTAKLVARLRDPRPAASRPDVDSLTPRE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L+ G +++EIA L L+ TV ++ + KL+ +R+QA A+ Sbjct: 160 RETLRHLARGASNKEIARSLDLAESTVKVHVQNILRKLNLSSRVQAAVFAVE 211 >gi|307155198|ref|YP_003890582.1| LuxR family two component transcriptional regulator [Cyanothece sp. PCC 7822] gi|306985426|gb|ADN17307.1| two component transcriptional regulator, LuxR family [Cyanothece sp. PCC 7822] Length = 248 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L+L G + +IAEKL ++V TV ++ + KL +R QA +A+R Sbjct: 185 DPLTDRELDVLELIVAGCNNAQIAEKLYITVGTVKTHVRNILNKLCVNDRTQAAVRALRS 244 Query: 232 GYI 234 G + Sbjct: 245 GLV 247 >gi|13990973|dbj|BAB47256.1| LuxR family quorum-sensing transcription factor [Agrobacterium tumefaciens] Length = 269 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 36/190 (18%), Positives = 62/190 (32%), Gaps = 19/190 (10%) Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIE---------SSGQLSVRLEG 110 P Y + + P++W++ + +L + Sbjct: 84 TFNSYPEEWQGVYLESHYSRID----PVVWEAKTRMEIFPWTADEWPSRGKSELRQFRDQ 139 Query: 111 GL--LPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRS 168 + +G+ PV F + F S + + A V+ L + Sbjct: 140 AINHGIRSGVTIPVEGSFGSTMMLTFASSAPAADVSKLQDGQKAVRAVLAIHYRLKMLAA 199 Query: 169 SAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + L+ RE CL+ A G T+ E A G++ TV YL A KL+A Sbjct: 200 TTIVPPKRLLSPREAMCLKWAAKGKTAPETAILTGINPRTVQHYLDKAREKLEAATVPHL 259 Query: 225 IAKAIRFGYI 234 +A A G + Sbjct: 260 VAIAKDHGLL 269 >gi|302553638|ref|ZP_07305980.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302471256|gb|EFL34349.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 247 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + V G ++ L+ F + LT+RE Sbjct: 132 GARGYVTKTITGTDLVDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 191 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 192 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 247 >gi|269839567|ref|YP_003324259.1| LuxR family transcriptional regulator [Thermobaculum terrenum ATCC BAA-798] gi|269791297|gb|ACZ43437.1| two component transcriptional regulator, LuxR family [Thermobaculum terrenum ATCC BAA-798] Length = 218 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%) Query: 151 GACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT-SEEIAEKLGLSVHTVNAYL 209 G +++ + + + LTERE L+L G T ++E+AE+L LS +TV +L Sbjct: 126 GLARKLLREMSKPAGRAEREPEVLTEREQEILELLVQGVTSNKELAERLILSENTVKYHL 185 Query: 210 GSATVKLDAVNRIQAIAKAIRFGYI 234 + KL NR Q +A A++ G + Sbjct: 186 RNILDKLHLQNRTQVVAYALQHGLV 210 >gi|182414312|ref|YP_001819378.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177841526|gb|ACB75778.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 212 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G++ + L + + G QV+ + + S +L+ RE L Sbjct: 102 LQAGASGFIGKDTALAELLDAIRKIRAGD--QVVPSEVA-RRLASRITSHLSTRELEVLA 158 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G G +++EI L + TV ++ + KL +R QA+ ++ G I Sbjct: 159 LIGRGLSNKEIGAALNVVESTVKVHVTNILSKLGVADRTQAVLAGVKRGII 209 >gi|204929147|ref|ZP_03220290.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321691|gb|EDZ06890.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 215 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A+G + ++L E F + LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVNEYLRERERFGAQEDPFSILTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|324114391|gb|EGC08360.1| response regulator receiver domain-containing protein [Escherichia fergusonii B253] Length = 214 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ SE L + A+G ++++L E F + LTERE Sbjct: 100 DAGADGYLLKDSEPESLLAAIQKGANGGKVFSARVSEYLRERERFGSKDDPFSTLTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAKGLSNKQIASALNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|262376171|ref|ZP_06069401.1| two component transcriptional regulator [Acinetobacter lwoffii SH145] gi|262308772|gb|EEY89905.1| two component transcriptional regulator [Acinetobacter lwoffii SH145] Length = 229 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 50/125 (40%), Gaps = 18/125 (14%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----------------FKKRSS 169 GYV+ + + +A + G I F+ + ++ Sbjct: 107 AGATGYVLKERDDVEVALAIRSILRGGAP--IDPFVAREILKQISIPTISGTVEQNRPAA 164 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT+RE L L G ++ EIAE+L +S +TV +++ KL R +A++ A Sbjct: 165 DQETLTQREQEILSLVAQGLSNREIAEQLCVSRYTVESHIKHIYRKLSVSKRTKAVSTAR 224 Query: 230 RFGYI 234 G + Sbjct: 225 HLGIL 229 >gi|307328780|ref|ZP_07607951.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306885588|gb|EFN16603.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 217 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 12/124 (9%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS---- 169 PV LG G+++ + L N V A G +++ + + Sbjct: 92 PV-LGAGACGFLVKDTPPAELLNAVRRAADGEAPFSRDTLDRIVAQAVHTRSASDAGPDI 150 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +T RE L L G G +++EIA++L L V TV ++ S K NRI+ A+ Sbjct: 151 PAPAITPREREVLGLLGVGLSNKEIADRLHLGVTTVKTHVASLMTKTGRDNRIRLAVLAV 210 Query: 230 RFGY 233 R G Sbjct: 211 RAGI 214 >gi|300087378|ref|YP_003757900.1| LuxR family two component transcriptional regulator [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527111|gb|ADJ25579.1| two component transcriptional regulator, LuxR family [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 247 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 14/124 (11%) Query: 122 VRLGFHKNGYV-IFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKK----RSS 169 + G GY+ + + L + G + + L+ +K R++ Sbjct: 109 IHAGAG--GYLFLKDTTPDALTKNIHRVIEGDAQVSTVLLRAAVENLLQNGRKTLAERTA 166 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LT RE L+L G+G +++EI+ L +++ TV ++ + KL A +R A A Sbjct: 167 EAAHLTAREVDVLRLMGNGDSNKEISSSLNITLDTVKKHIRNVIDKLQARSRTHASIIAA 226 Query: 230 RFGY 233 + G Sbjct: 227 QAGI 230 >gi|269956425|ref|YP_003326214.1| LuxR family two component transcriptional regulator [Xylanimonas cellulosilytica DSM 15894] gi|269305106|gb|ACZ30656.1| two component transcriptional regulator, LuxR family [Xylanimonas cellulosilytica DSM 15894] Length = 241 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 10/119 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA-------ARNLT 175 +GY++ L V A G V+T L+ + R A LT Sbjct: 115 AGASGYLLKDVSPRGLVTAVRAVADGEAMLSPAVLTRMLDQYVARPPAGVALPPAIAALT 174 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE + G ++ +IA +L LS TV Y+ KL +R+Q A G + Sbjct: 175 DREREVARNVARGLSNAQIAARLFLSEATVKTYVSRLLTKLGLRDRVQIAVLAYETGLV 233 >gi|152978046|ref|YP_001343675.1| two component LuxR family transcriptional regulator [Actinobacillus succinogenes 130Z] gi|150839769|gb|ABR73740.1| two component transcriptional regulator, LuxR family [Actinobacillus succinogenes 130Z] Length = 209 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E +L ++ A G I D L +LT+RE L Sbjct: 98 DAGADGYLLKDTEPDVLLVQLKRIAGGEVVLSDSIKDLLLERHASKDPIYSLTDREMDVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G ++++IA KL +S TV ++ + KL+ +R+ A Sbjct: 158 QQIATGLSNKQIAGKLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|320106448|ref|YP_004182038.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924969|gb|ADV82044.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 224 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ T LA + HG V T+ + S+ L+ RE L+ Sbjct: 116 AGAVGYLLKTMLRKELAQAIRAV-HGGLRYVPTEIASELTRHFSS-EALSARELEVLRSV 173 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++++ +A+KL +S TV ++ + KL A +R+ A+ A+R G + Sbjct: 174 SRGWSNKIVADKLAISEDTVKGHMRTILAKLGANDRLDAVMTALRRGIL 222 >gi|227523758|ref|ZP_03953807.1| response regulator [Lactobacillus hilgardii ATCC 8290] gi|227089073|gb|EEI24385.1| response regulator [Lactobacillus hilgardii ATCC 8290] Length = 209 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 3/105 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +GY++ S L + G Q I D + ++A L+++E L+ A DG Sbjct: 107 SGYLLKDSPSDDLVTAIRNVMTG---QTIYDPELVRNMVNAADNPLSDQEMVVLKSAADG 163 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T++EIAEKL LS TV YL + KL NR++A+ A + Sbjct: 164 DTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNMAKNNKW 208 >gi|182437835|ref|YP_001825554.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778470|ref|ZP_08237735.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178466351|dbj|BAG20871.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326658803|gb|EGE43649.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 214 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 38/109 (34%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + S LT+RE L Sbjct: 105 AGATGYLLKAERPEELFAAIRSAAQGRTTLSAPVASRVMARMRSPRPGLTDRERDILAQL 164 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +IA L +S TV +LG KL R A++ A + Sbjct: 165 SQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLL 213 >gi|167554141|ref|ZP_02347882.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|194442551|ref|YP_002041509.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|198244741|ref|YP_002216317.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207857666|ref|YP_002244317.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194401214|gb|ACF61436.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|197939257|gb|ACH76590.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205321582|gb|EDZ09421.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|206709469|emb|CAR33813.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 215 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A+G + ++L E F + LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVNEYLRERERFGAQEDPFSILTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|16765574|ref|NP_461189.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62180821|ref|YP_217238.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613039|ref|YP_001587004.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167992577|ref|ZP_02573674.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168242357|ref|ZP_02667289.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261744|ref|ZP_02683717.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466061|ref|ZP_02699931.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|194449116|ref|YP_002046301.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197265746|ref|ZP_03165820.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200388108|ref|ZP_03214720.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|238913787|ref|ZP_04657624.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16420784|gb|AAL21148.1| response regulator in two-component regulatory system with NarQ (or NarX) [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62128454|gb|AAX66157.1| response regulator in two-component regulatory system with NarQ (or NarX) [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362403|gb|ABX66171.1| hypothetical protein SPAB_00746 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194407420|gb|ACF67639.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|195631360|gb|EDX49920.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197244001|gb|EDY26621.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199605206|gb|EDZ03751.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205329245|gb|EDZ16009.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338346|gb|EDZ25110.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205349503|gb|EDZ36134.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261247456|emb|CBG25283.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994331|gb|ACY89216.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158805|emb|CBW18318.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913237|dbj|BAJ37211.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224903|gb|EFX49966.1| Nitrate/nitrite response regulator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322715299|gb|EFZ06870.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|332989180|gb|AEF08163.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 215 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A+G + ++L E F + LTERE Sbjct: 100 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVNEYLRERERFGAQEDPFSILTEREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 160 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 204 >gi|311900038|dbj|BAJ32446.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 214 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 40/97 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ + LA + A G L + + +L+ RE LQL Sbjct: 101 AGATGYLLKDAPPEDLAAAIHATARGETVLAPPVAARLLGRVRAGRPSLSPREAEILQLL 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 +G + +I+++L +S TV +L KL +R Sbjct: 161 AEGLPNRQISKRLFISEATVKTHLVHIYDKLGVDSRT 197 >gi|159029157|emb|CAO87517.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 93 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 40/66 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +L++RE L L +G T++EI+EKL +S TV+ ++ + K NR++ + A+ Sbjct: 8 TAASLSDRELEILDLVANGLTNQEISEKLEISKRTVDNHISNILTKTKTDNRVELVRWAL 67 Query: 230 RFGYIC 235 +G +C Sbjct: 68 HWGKVC 73 >gi|114045833|ref|YP_736383.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-7] gi|113887275|gb|ABI41326.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-7] Length = 198 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ + L + + G ++I L + L ++E L+ A Sbjct: 94 AGVGGFLLKDAPSETLVHAIQQVIAGK--RIIDPELAMMAIGD--VDPLNDKERRALRFA 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ EIAE L ++ TV YL A KL+A NRI A A + G++ Sbjct: 150 SEGKSTAEIAEMLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGWL 198 >gi|256389975|ref|YP_003111539.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256356201|gb|ACU69698.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 208 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + +++ + L + G + + D ++ LT RE L + Sbjct: 104 GASAFLVKDAPVAELVAAIRKVLRG---ERVIDPDLAAAALAAGENPLTPRERDVLAASA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T +IA +L LS TV YL + K A NR +A+ A + G++ Sbjct: 161 DGSTIADIARRLHLSEGTVRNYLSACIQKTAARNRTEAVRTAQQRGWL 208 >gi|297201836|ref|ZP_06919233.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] gi|197717312|gb|EDY61346.1| two-component system response regulator [Streptomyces sviceus ATCC 29083] Length = 241 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + V G ++ L+ F + LT+RE Sbjct: 126 GARGYVTKTITGTDLVDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 185 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 186 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 241 >gi|159899859|ref|YP_001546106.1| LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159892898|gb|ABX05978.1| transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 461 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S L+ERE L+ G ++ EIA L +S +TV ++ + KL ++R +A +A Sbjct: 2 SDQSPLSEREIEVLRQLALGASNNEIANTLVISPNTVKVHIRNIYAKLGVLSRAEATLEA 61 Query: 229 IRFGYI 234 +R G I Sbjct: 62 VRRGLI 67 >gi|329941697|ref|ZP_08290962.1| LuxR family two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329299414|gb|EGG43314.1| LuxR family two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 9/115 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFL--ELFKKRSSAARNLTE 176 +GYV+ + L + V A G A +++ + ++ A LT+ Sbjct: 107 AGASGYVLKQIKGSDLVSAVRTVARGQSLLDPSATTRLMARLRGGQAKEEEPEALPGLTD 166 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L L G+G T+ +I ++L L+ TV ++ KL RIQA A + Sbjct: 167 REREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQA 221 >gi|330810002|ref|YP_004354464.1| two-component response regulator NarL [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378110|gb|AEA69460.1| Putative two-component response regulator NarL [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 215 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 8/114 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTER 177 L NGY++ E +L + +GA +V+ L A LTER Sbjct: 99 LRLDANGYLLKDMEPELLIQYIRDALNGALVISPGLTRVMAQ--ALRSPPRQADVELTER 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L+ GY+++ I KLG++ TV ++ + KL +R++A A+ Sbjct: 157 ERQVLKTIAGGYSNKVIGHKLGITEGTVKVHVKNLLHKLGLRSRVEAAVWAMEH 210 >gi|300933646|ref|ZP_07148902.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Corynebacterium resistens DSM 45100] Length = 201 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GYV+ + LA V GA + D + S LT RE + Sbjct: 94 LEAGASGYVVKDTPAAQLAESVRRVHAGAR---VVDSALATEALYSPPSPLTPREVDVCR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +S IA+ L LS TV ++ SA K A NR A A G++ Sbjct: 151 EVLTGKSSANIAKALHLSEGTVRNHVSSAITKTQASNRYDAARIARDRGWL 201 >gi|126729492|ref|ZP_01745306.1| Response regulator [Sagittula stellata E-37] gi|126710482|gb|EBA09534.1| Response regulator [Sagittula stellata E-37] Length = 218 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 45/110 (40%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +G + +S + + + G Y L + LT RE L L Sbjct: 103 AVGIDGLFLKSSPPEEMLRGLTMILAGDTYVARAVLDILEAADNDGREALTMRERQVLYL 162 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ IAE+L +SV TV+ + KL + Q +A A++ G + Sbjct: 163 IAEGCSNAAIAERLSISVKTVDNHRTRLMAKLQVHSVAQLVAYALKSGLL 212 >gi|323358969|ref|YP_004225365.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323275340|dbj|BAJ75485.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 206 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 46/109 (42%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + L V A G L + +L+ RE L+L Sbjct: 97 AGASGYLLKDAPPHELLAGVRAAAAGHSALAPAIAGRLMARLREPRISLSAREIEVLRLV 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ ++AE+L ++ TV ++L KL +R A++ A G + Sbjct: 157 ARGASNADVAERLHITDATVKSHLAHVFSKLGVTSRTAAVSTARSLGIL 205 >gi|282860900|ref|ZP_06269966.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564636|gb|EFB70172.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 231 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + V G ++ L+ F + LT+RE Sbjct: 116 GARGYVTKTITGSDLVDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 175 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 176 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 231 >gi|256790252|ref|ZP_05528683.1| LuxR family two-component response regulator [Streptomyces lividans TK24] gi|289774125|ref|ZP_06533503.1| LuxR family two-component system response regulator [Streptomyces lividans TK24] gi|289704324|gb|EFD71753.1| LuxR family two-component system response regulator [Streptomyces lividans TK24] Length = 233 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 10/116 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK-------KRSSAARNLT 175 GYV+ + L + V A G T + + + LT Sbjct: 108 AGAAGYVLKQIQGSDLVSAVRTVARGQSLLDASATTKLMARLRGGGQQPAEEPEMLPGLT 167 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +RE L+L G+G T+ +I ++L L+ TV ++ KL RIQA A + Sbjct: 168 DREREILELIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRIQAAVIATQA 223 >gi|84685343|ref|ZP_01013241.1| DNA-binding response regulator, LuxR family protein [Maritimibacter alkaliphilus HTCC2654] gi|84666500|gb|EAQ12972.1| DNA-binding response regulator, LuxR family protein [Rhodobacterales bacterium HTCC2654] Length = 203 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 46/110 (41%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ T L N V A G Y + + + A L ERE L+ Sbjct: 93 LDLGAAGFLPKTLSAKSLVNAVRFMAMGEQYVPVDFMTAKEEAKHPLAEKLAEREMQVLK 152 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G +++EIA L L+ T+ YL + K+D NR QA A G Sbjct: 153 GLTEGKSNKEIARDLDLTEPTIKLYLKTLYRKIDVNNRTQAALVAREAGL 202 >gi|226310364|ref|YP_002770258.1| two-component response regulator [Brevibacillus brevis NBRC 100599] gi|226093312|dbj|BAH41754.1| two-component response regulator [Brevibacillus brevis NBRC 100599] Length = 235 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 22/131 (16%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAAR------ 172 GY++ S+ + + + G + + + L+ +K Sbjct: 104 AGAVGYMLKDSDSQDMLDLIRRAHQGEALFYTATAAKALAEVLQFQQKNYEPDSDADCDS 163 Query: 173 ---------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT+RE L+ G +++IA+ L +S TV ++ K+ +R Q Sbjct: 164 TLPPLVMFDQLTDRERDVLEQLSYGKRNDQIAQHLLISGGTVKTHIHRILQKMGVEDRTQ 223 Query: 224 AIAKAIRFGYI 234 A+AKAIR+ + Sbjct: 224 AVAKAIRYKIV 234 >gi|114799510|ref|YP_759982.1| putative DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] gi|114739684|gb|ABI77809.1| putative DNA-binding response regulator [Hyphomonas neptunium ATCC 15444] Length = 213 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 5/115 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN--LTERE 178 L NGY++ L ++ A G + ++ F+ AA + LT RE Sbjct: 94 LSAGANGYLLKDQPQDTLIRQLRQIADGVPALSPSIARRIMDHFRLTGPAAPDDDLTARE 153 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G G + E+A L LS +TV +Y+ KL +R +A A R G Sbjct: 154 RDVLALIGRGMRNGEVARALDLSENTVASYIKGIYRKLGISSRAEASWHATRMGL 208 >gi|110681357|ref|YP_684364.1| nitrate/nitrite response regulator protein, putative [Roseobacter denitrificans OCh 114] gi|109457473|gb|ABG33678.1| nitrate/nitrite response regulator protein, putative [Roseobacter denitrificans OCh 114] Length = 210 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 52/112 (46%), Gaps = 8/112 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + V ++ + + A G +++ +L++ + ++ L+ +E L Sbjct: 100 MASGAAACVARSAPTESIVQTCLDVADG---KMVFPYLDIREIKTDPIETLSRKEREILD 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA-----KAIR 230 +G T+++++ +L +S +TV +L + KL NR QAIA KA R Sbjct: 157 ALAEGLTNKQLSARLEISTNTVKFHLSNIFDKLSVRNRTQAIAHYYASKARR 208 >gi|320106469|ref|YP_004182059.1| two component LuxR family transcriptional regulator [Terriglobus saanensis SP1PR4] gi|319924990|gb|ADV82065.1| two component transcriptional regulator, LuxR family [Terriglobus saanensis SP1PR4] Length = 210 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 2/109 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY+I L + G ++ + + NL++RE LQL Sbjct: 102 AGARGYLIKGMPHDALIRAMHRVHTG--HRFLPQVISEALSSRVPGSNLSQREQEVLQLL 159 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EIAE+L + TV ++ ++L+ +R QA+ + ++ G + Sbjct: 160 FAGKSNREIAEELQIKETTVKTHVSVILMRLNVEDRTQAVVEGLKRGLV 208 >gi|297155349|gb|ADI05061.1| two-component system regulator [Streptomyces bingchenggensis BCW-1] Length = 237 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR-------N 173 L G ++ + V A G V++ +++ R++ Sbjct: 101 LHAGARGILLKNIPPEQMTAAVTAAARGNMVFSPGVMSRLVDICTHRTTPVEYDGSRLAT 160 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L+L GY + +A+ L +S TV +L A KL+ +R QA+A + FG Sbjct: 161 LTMREAEVLKLVAKGYGNSTVAKILHISEATVKTHLNRAMGKLEISSRAQAVALSYEFGL 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|227511558|ref|ZP_03941607.1| response regulator [Lactobacillus buchneri ATCC 11577] gi|227085203|gb|EEI20515.1| response regulator [Lactobacillus buchneri ATCC 11577] Length = 202 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 3/105 (2%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 +GY++ S L + G Q I D + ++A L+++E L+ A DG Sbjct: 99 SGYLLKDSPSDDLVTAIRNVMAG---QTIYDPELVRNMVNAADNPLSDQEMVVLKSAADG 155 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T++EIAEKL LS TV YL + KL NR++A+ A + Sbjct: 156 DTTKEIAEKLFLSNGTVRNYLSAIFSKLGVHNRLEAVNMAKNNKW 200 >gi|254442908|ref|ZP_05056384.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae bacterium DG1235] gi|198257216|gb|EDY81524.1| transcriptional regulator, LuxR family protein [Verrucomicrobiae bacterium DG1235] Length = 200 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTER 177 L +G+V + EF ++ N + I A G C+ +V+ + + S NLT R Sbjct: 78 LQAGAHGFVEKSVEFGIVLNALNIVADGGCFFGFNITEVLRSVVRSIDRSSERTDNLTAR 137 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L G ++++IA KLGLSV T++ + S KLD N A+ + Sbjct: 138 EREVLTFIASGNSNKDIALKLGLSVKTIDNHRCSMMRKLDLHNVADITRYAVEHRIV 194 >gi|295839362|ref|ZP_06826295.1| two-component system response regulator [Streptomyces sp. SPB74] gi|197699050|gb|EDY45983.1| two-component system response regulator [Streptomyces sp. SPB74] Length = 226 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 14/125 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE-------LFKKRSS 169 L G++ +E L + A G A +IT FL S+ Sbjct: 97 LRAGAAGFLGKGAEPAELLGAIRTAAAGEALLSPAATRSLITRFLAQAPGTGPAAGVDSA 156 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L G +++EIAE+L +S TV ++ A K+ A +R Q + A Sbjct: 157 RLAALTGREREVLVQVAAGLSNDEIAERLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAY 216 Query: 230 RFGYI 234 G + Sbjct: 217 ETGLV 221 >gi|314980198|gb|EFT24292.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA2] gi|315088072|gb|EFT60048.1| response regulator receiver domain protein [Propionibacterium acnes HL072PA1] Length = 218 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G+++ + L + + A G A +++ + AA Sbjct: 97 LKAGASGFLLKDARPTELLSAIRNVADGDAVVAPSATRRLLDHVVPTLPNDPKAADKRLS 156 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G T+ EIA+ L ++ TV ++G KL+ +R+ + A G Sbjct: 157 VLTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVG 216 Query: 233 YI 234 + Sbjct: 217 LL 218 >gi|300783390|ref|YP_003763681.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299792904|gb|ADJ43279.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 201 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 14/122 (11%) Query: 119 AFPVR------LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR 172 AFP L G ++ + + + + + ++ +S+ Sbjct: 88 AFPEHVAVAPTLAAGACGILVKHAGAIAIRDAIRSVVRTGAFR--------TGTPASSTA 139 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +T RE L+L G+T+ EI +L LS++TV YL + KL A NR Q IA A G Sbjct: 140 PVTAREYDVLRLVAAGHTNPEIGTELNLSINTVKTYLWTVMQKLAARNRAQLIANARGQG 199 Query: 233 YI 234 + Sbjct: 200 LL 201 >gi|261821966|ref|YP_003260072.1| transcriptional regulator NarP [Pectobacterium wasabiae WPP163] gi|261605979|gb|ACX88465.1| two component transcriptional regulator, LuxR family [Pectobacterium wasabiae WPP163] Length = 210 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 1/104 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII-EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 + +GY++ S L + + +A + + K+ S LTERE L Sbjct: 99 MDAGADGYLLKDSAPEHLLDAIRSSDAFSEQVRDVLRHRIAIKETPSPFTVLTERELDVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 159 QEVASGLSNKQIASVLYISEETVKVHIRNMLRKLNVRSRVAATV 202 >gi|182415168|ref|YP_001820234.1| two component LuxR family transcriptional regulator [Opitutus terrae PB90-1] gi|177842382|gb|ACB76634.1| two component transcriptional regulator, LuxR family [Opitutus terrae PB90-1] Length = 238 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 45/116 (38%), Gaps = 5/116 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-----ACYQVITDFLELFKKRSSAARNLTERE 178 L GY+ T+ F + A G A + + R A LT RE Sbjct: 100 LAAGAKGYLEKTAPFDEFKMALRSVAAGREYLGASAKRLLQQEAHAAMRLGAGPALTNRE 159 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G S+EIA++L LS TV + + + + Q + A R G I Sbjct: 160 REVLRYVAEGLGSKEIADRLALSTRTVENHRANILKRTGLRSVAQLVLYAARLGLI 215 >gi|314930861|gb|EFS94692.1| response regulator receiver domain protein [Propionibacterium acnes HL067PA1] Length = 218 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G+++ + L + + A G A +++ + AA Sbjct: 97 LKAGASGFLLKDARPTELLSAIRNVADGDAVVAPSATRRLLDHVVPTLPNDPKAADKRLS 156 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G T+ EIA+ L ++ TV ++G KL+ +R+ + A G Sbjct: 157 VLTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVG 216 Query: 233 YI 234 + Sbjct: 217 LL 218 >gi|310643754|ref|YP_003948512.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309248704|gb|ADO58271.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 596 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173 + +GY++ + E LA + + G + D + + Sbjct: 475 MRSGADGYLLKSIESRELAETIRLVYRGGTV-INQDLFHRMWDGNDEEESVGPRSDGEEY 533 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G + I+EKL LS TV Y + KL NR +A+ KA G Sbjct: 534 GLTKRELEVLNLLSQGNRYKTISEKLYLSNGTVRNYASTLYDKLGVNNREEAVQKARDTG 593 Query: 233 YI 234 + Sbjct: 594 LL 595 >gi|168484073|ref|ZP_02709025.1| DNA-binding response regulator [Streptococcus pneumoniae CDC1873-00] gi|172042589|gb|EDT50635.1| DNA-binding response regulator [Streptococcus pneumoniae CDC1873-00] gi|332199429|gb|EGJ13506.1| response regulator [Streptococcus pneumoniae GA47368] Length = 199 Score = 93.1 bits (230), Expect = 3e-17, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEVVMTHPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++++EI +KL LS TV Y+ + KLDA NR +A A G++ Sbjct: 151 VQGFSNQEIVDKLYLSNGTVRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|332527516|ref|ZP_08403568.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gi|332111923|gb|EGJ11901.1| two component LuxR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 214 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 10/123 (8%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS--A 170 FP L GY++ ++ ++ + G +++ F + K ++S Sbjct: 91 FPA-LQAGAFGYILKEQPRELIVEQLQRISQGEPPLSPSIARRMMAHFTQKAKPQTSLLP 149 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE+ L GYT EI +LGLS HT+ Y+ KL+ +R +A +A R Sbjct: 150 HVQLTDRESEVLLRVAKGYTLPEIGVQLGLSRHTIADYVKQIYRKLNVSSRAEAALEAQR 209 Query: 231 FGY 233 G Sbjct: 210 LGL 212 >gi|330721944|gb|EGG99887.1| Nitrate/nitrite response regulator protein [gamma proteobacterium IMCC2047] Length = 217 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 7/112 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNL-TERE 178 +GY++ E L ++ + A G Q++T L K +++NL T RE Sbjct: 101 AGADGYLLKDCEPEDLMEKLRLAATGKSVLDDELVQIVTHALRENKPTPPSSKNLLTARE 160 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L L +++ IA +LG++ TV ++ + KL+ +RI+A A+ Sbjct: 161 RDILDLLAACKSNKVIANELGITDGTVKVHVKNLLRKLNLKSRIEAAVWALE 212 >gi|300779885|ref|ZP_07089741.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] gi|300533995|gb|EFK55054.1| two component system response regulator [Corynebacterium genitalium ATCC 33030] Length = 222 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 48/122 (39%), Gaps = 14/122 (11%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQV--------------ITDFLELFKKRSSAA 171 +G+++ ++ +LA+ V G + L A Sbjct: 99 AGVHGFLLKDADPDVLADAVRAVDRGESVLASGVTGAVLEWVRGGVDKRNALSDYERQAL 158 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G T+ EI+++L ++ TV ++ + VKL A +R+ + A R Sbjct: 159 SMLTAREVEVLAEIAAGATNAEISQRLFIAPTTVKTHVKNLLVKLGARDRVALVLLAHRA 218 Query: 232 GY 233 G Sbjct: 219 GI 220 >gi|283457639|ref|YP_003362223.1| response regulator [Rothia mucilaginosa DY-18] gi|283133638|dbj|BAI64403.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Rothia mucilaginosa DY-18] Length = 235 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G+V+ + LA + H V + A LTERE L+ Sbjct: 128 LEAGASGFVVKDTGARQLAEAIRRV-HAGLRVVDPSLAA--DSLVTGASPLTEREAQVLR 184 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T+++IA L LS TV YL +A K A R A+ A G++ Sbjct: 185 EAASGGTAQQIASALFLSAGTVRNYLSAAMAKTGASTRQDAVRIATENGWL 235 >gi|253577576|ref|ZP_04854888.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] gi|251843045|gb|EES71081.1| response regulator [Paenibacillus sp. oral taxon 786 str. D14] Length = 227 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEV------IIEAHGACYQVITDFLELFKKRSSAARNLTERET 179 YV+ T L + + G Q +T L + +TERE Sbjct: 111 AGAVSYVLKTVSAEELIYALQGAYRGMPVMTGEVAQALTRGLRQRTVQGD-DSGMTEREK 169 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G ++++IAE+L +S+ TV ++ + +K + +R Q A R G++ Sbjct: 170 EVLLLIAEGKSNKDIAEELHISIKTVKTHVSNLLMKCELEDRTQLAIYAHRQGWV 224 >gi|269836188|ref|YP_003318416.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785451|gb|ACZ37594.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 216 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 2/86 (2%) Query: 151 GACYQVITDFLELFKKRSS-AARNLTERETSCLQLAGDGYT-SEEIAEKLGLSVHTVNAY 208 G +V+ +F R A LTERE L+L G T ++++A++L +S +TV + Sbjct: 126 GLARKVLNEFARPAAPRPERTAEELTEREREVLELLVQGVTSNKDLADRLFVSENTVKYH 185 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L + KL NR Q IA A+R G + Sbjct: 186 LRNILNKLHLQNRAQVIAYALRHGLV 211 >gi|328881569|emb|CCA54808.1| two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 218 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 50/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY----QVITDFLELFKKRSSAARN----LT 175 L G+++ + L + V + A V E + R A LT Sbjct: 97 LRVGAAGFLLKRAAAEELVSAVRLVARSDSLLYPAAVRGLAAEHARNRPPVAPPWVARLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L G T+ EIA ++G+ TV ++ S K A +R QA+ A G++ Sbjct: 157 EREAEVLRLVATGLTNAEIAGRMGVGPATVKTHVASVLAKSGARDRTQAVILAYESGFV 215 >gi|319441505|ref|ZP_07990661.1| LuxR family two component transcriptional regulator [Corynebacterium variabile DSM 44702] Length = 232 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 52/134 (38%), Gaps = 22/134 (16%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLEL------------- 163 L G++ +E + V + A +IT ++++ Sbjct: 96 LRAGAGGFIGKGAEPEDIVRAVQAVHAGDSLFSPAATRSLITRYIDVPDATGQGGASSGG 155 Query: 164 --FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + + LT RE L L G G +++EIAEK +S HT ++ K++A +R Sbjct: 156 TVSEDAAKDLARLTGREQEVLLLVGQGLSNQEIAEKFFISPHTAKTHVNRIMSKINAHDR 215 Query: 222 IQAIAKAIRFGYIC 235 Q + A G + Sbjct: 216 AQLVILAYESGLLV 229 >gi|153004672|ref|YP_001378997.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152028245|gb|ABS26013.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 218 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKK-RSSAARNLT 175 L GYV+ S LAN + G + D + + LT Sbjct: 96 LKAGVAGYVLKKSAGSELANAIRAVNRGGLVLDPEVARTAMQDAGQATPGGAADPYEALT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L +G +++E+AE LG+SV T ++ KL NR + + A++ G I Sbjct: 156 DREKQVLKLVAEGRSNKEVAEVLGISVKTAMSHREHVMEKLQVHNRTELVRFALKKGVI 214 >gi|37522644|ref|NP_926021.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] gi|35213645|dbj|BAC91016.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 232 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 38/64 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + A L+ RE LQL G ++++IA+ L LSV+TV ++ KL A NR QA+ KA Sbjct: 167 TQAVALSRREREILQLIQQGLSNQQIADHLYLSVNTVKNHMSRIFTKLSATNRTQAVLKA 226 Query: 229 IRFG 232 + G Sbjct: 227 MGTG 230 >gi|163847172|ref|YP_001635216.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222525011|ref|YP_002569482.1| LuxR family two component transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668461|gb|ABY34827.1| response regulator receiver [Chloroflexus aurantiacus J-10-fl] gi|222448890|gb|ACM53156.1| two component transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 219 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTER 177 L N Y++ ++ L + + G + + D L + LT R Sbjct: 97 LRAGANAYLLKDADATELIEAIHVVYRGEAALAGSAAARVLDLLRRNDTSPALNEVLTPR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L L G + IA KL L+ TV L KL NR QA A++ G + Sbjct: 157 ERDILALLAQGDDNRAIALKLSLAEKTVGNRLSEIFQKLGVSNRTQAAIVAVQRGLV 213 >gi|325067026|ref|ZP_08125699.1| LuxR family two component transcriptional regulator [Actinomyces oris K20] Length = 203 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ + LA + H + + + + LTERE L A Sbjct: 98 AGAAGFIVKDTPPEALAEAIRKV-HAGLRVIDPELAQ--ESVLLGPNPLTEREKEVLLAA 154 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA +L L TV YL SA K A NR +A A G++ Sbjct: 155 ATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGWL 203 >gi|300790995|ref|YP_003771286.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299800509|gb|ADJ50884.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 261 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 35/76 (46%) Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D A L+ RE LQL +G + IA+ L LSV TV ++ S KL A Sbjct: 164 DLAHDSPPAPRGAMPLSRREYQVLQLVAEGLENSAIAKLLFLSVETVRTHVKSILRKLSA 223 Query: 219 VNRIQAIAKAIRFGYI 234 +R A+ A R G + Sbjct: 224 RDRTHAVTIAFRSGIL 239 >gi|225175001|ref|ZP_03728998.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] gi|225169641|gb|EEG78438.1| two component transcriptional regulator, LuxR family [Dethiobacter alkaliphilus AHT 1] Length = 205 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAARNLTERETSCL 182 + +GY++ + L V + G Y + L +K LT RE L Sbjct: 93 MALEVDGYILKETLPEELITSVRMIHKGRKYFDPVIVQHALEEKNEDKLSELTTREMEVL 152 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + G +++IAE L +S HTV ++G KL+ +R QA + Sbjct: 153 KFLSRGLNNKKIAEDLFISEHTVKKHVGQILTKLELQDRTQAALYGVSQAL 203 >gi|307328696|ref|ZP_07607868.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306885645|gb|EFN16659.1| transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 159 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 51/116 (43%), Gaps = 5/116 (4%) Query: 121 PVRLGFHKN--GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERE 178 P+R GYV + L + A Y + D L + +A LTERE Sbjct: 47 PLRRAHEARALGYVDKDAPPQRLIEAIRRVARKERY--VDDALG-YGFLQAAKIPLTERE 103 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L LA DG + EIA L LS T+ YL + T K A NR+ AI + G++ Sbjct: 104 LGVLSLAADGASIPEIARTLHLSTGTIRNYLAAITRKTGARNRVDAIRISQCEGWV 159 >gi|83310970|ref|YP_421234.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82945811|dbj|BAE50675.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 213 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 7/117 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTERE 178 G++ T E + V + G Y V +F L K ++ A T RE Sbjct: 94 AAGARGFLPKTLESRVFIQAVGLVGAGGTY-VPAEFAALPSKPAAPATPTLDPSLFTSRE 152 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L G +++EIA +L L T+ +L KL NR A A+R G + Sbjct: 153 MEVLALIVAGASNKEIARQLDLQEVTIKLHLTRIFQKLGVKNRSHAAVTAVRGGLVA 209 >gi|17232908|ref|NP_489446.1| two-component response regulator [Nostoc sp. PCC 7120] gi|17134898|dbj|BAB77454.1| two-component response regulator [Nostoc sp. PCC 7120] Length = 237 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L DG ++ IAEKL +SV TV ++ + KL +R Q +A+R G Sbjct: 175 PLTRRELDVLKLIVDGCSNAVIAEKLYVSVGTVKTHVRNILNKLCVSDRTQIAVRALRAG 234 Query: 233 YIC 235 + Sbjct: 235 LVA 237 >gi|332685604|ref|YP_004455378.1| two-component response regulator [Melissococcus plutonius ATCC 35311] gi|332369613|dbj|BAK20569.1| two-component response regulator [Melissococcus plutonius ATCC 35311] Length = 201 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 NGY++ S L + G + + L + + + LT+RE L L Sbjct: 97 QVNGYMLKDSPSDELIRSLYSILAGDT--IFSHEL-VSQSFVTCKNPLTDREIEILNLLK 153 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++IAE L LS TV Y+ + K +RI+AI A G+I Sbjct: 154 KGANTKQIAENLFLSNGTVRNYISAILNKTGTKSRIEAINLANEQGWI 201 >gi|239943689|ref|ZP_04695626.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990140|ref|ZP_04710804.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447153|ref|ZP_06586543.1| two-component system DNA-binding response regulator [Streptomyces roseosporus NRRL 15998] gi|291350100|gb|EFE77004.1| two-component system DNA-binding response regulator [Streptomyces roseosporus NRRL 15998] Length = 231 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + V G ++ L+ F + LT+RE Sbjct: 116 GARGYVTKTITGTDLVDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 175 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 176 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 231 >gi|171778727|ref|ZP_02919823.1| hypothetical protein STRINF_00675 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282684|gb|EDT48108.1| hypothetical protein STRINF_00675 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 198 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + + G EL + S L+ +E LQL Sbjct: 94 AGVDAYVLKDRSTSELMSTIHTVLAGKKEY----SSELMESMISQDNPLSPQEKRILQLI 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++++IA+ L LS TV Y S KL A NR++A A G++ Sbjct: 150 SLGKSNQDIADTLYLSNGTVRNYTSSIFNKLSANNRVEAARIAKDKGWL 198 >gi|291617509|ref|YP_003520251.1| EanR [Pantoea ananatis LMG 20103] gi|151175682|dbj|BAF69065.1| AHL-dependent transcriptional regulator [Pantoea ananatis] gi|291152539|gb|ADD77123.1| EanR [Pantoea ananatis LMG 20103] gi|327393946|dbj|BAK11368.1| transcriptional activator protein EanR [Pantoea ananatis AJ13355] Length = 249 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 65/225 (28%), Gaps = 27/225 (12%) Query: 35 LYTINSALDFPRRQQLICELHNYD--LDSGDIPNILIETY-------GDDFLFHFNSGLL 85 + S+ P + N L P+ + Y D + Sbjct: 19 IQRKLSSFGSPEYAYTVVSKKNPSNVLIISSYPDEWVRLYRANNFQLTDPVILTAFKRTS 78 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI---FTSEFLMLA 142 P W + + L G + + + + ++ L Sbjct: 79 PFAWDE-NITLMSDLRFTKIFSLSKQYNIVNGFTYVLHDHMNNLALLSVIIKGNDQAALE 137 Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAARN-------------LTERETSCLQLAGDGY 189 + E G ++ DF E + + A + RE L A G Sbjct: 138 QRLASE-QGTMQMLLIDFNEQMYRLAGAEAERAPTVNQNADKTIFSSRENEVLYWASMGK 196 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T EIA G+SV TV ++ + VKL N QAI + I Sbjct: 197 TYSEIAAITGISVSTVKFHIKNVVVKLGVSNARQAIRLGVELDLI 241 >gi|225377710|ref|ZP_03754931.1| hypothetical protein ROSEINA2194_03361 [Roseburia inulinivorans DSM 16841] gi|225210459|gb|EEG92813.1| hypothetical protein ROSEINA2194_03361 [Roseburia inulinivorans DSM 16841] Length = 186 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 41/179 (22%), Positives = 69/179 (38%), Gaps = 19/179 (10%) Query: 60 DSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA 119 D + N ++ D L N E+ + + LS E ++ +G Sbjct: 19 DVSQLDNYIVSKKPDIILMDINLK------NISSEDGLELAKQILSCYPEQRVVILSGYD 72 Query: 120 FPVRLGFHKN----GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLT 175 PV + G+V E L + + G Y F + LT Sbjct: 73 LPVYRSEGRKIGAKGFVNKNIEPEKLISILSKIMQGILY---------FDREIPFIEGLT 123 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E +QL +G ++IA L +S T++ +L KLD + ++A+ KAI+ GYI Sbjct: 124 DSEKQIIQLIAEGQKRKDIASTLYISERTLSNHLQHIFEKLDVTSAVEAVTKAIQLGYI 182 >gi|182436531|ref|YP_001824250.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777153|ref|ZP_08236418.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|178465047|dbj|BAG19567.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657486|gb|EGE42332.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 231 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L N V G ++ L+ F + LT+RE Sbjct: 116 GARGYVTKTITGTDLVNSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 175 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 176 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 231 >gi|21224169|ref|NP_629948.1| two-component response regulator [Streptomyces coelicolor A3(2)] gi|3036890|emb|CAA18523.1| putative two-component response regulator [Streptomyces coelicolor A3(2)] Length = 229 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 13/127 (10%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN--- 173 FP L GY+ + + V G + LE + S R Sbjct: 99 FPA-LHAGARGYLTKDAGGDEIVRAVHSVLSGDAGLAPSIQRRLLEWLSESESEPRPTGP 157 Query: 174 ------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RET L L +G T+ +IA +L +S TV ++ + K +R QA+ Sbjct: 158 PEPPDGLTTRETEVLVLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRY 217 Query: 228 AIRFGYI 234 A G + Sbjct: 218 AYGKGLV 224 >gi|331699103|ref|YP_004335342.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953792|gb|AEA27489.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 198 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 7/105 (6%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 Y+ + + L + + + + + + + LTERE L+ G + Sbjct: 101 YLRWDASRPELVAAL-------AHTLASTAVPTPRTPADPGVQLTERELQVLRGMSQGKS 153 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + +I +L LS TV + KL +R QA+A R G + Sbjct: 154 NGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLVS 198 >gi|145596336|ref|YP_001160633.1| response regulator receiver [Salinispora tropica CNB-440] gi|145305673|gb|ABP56255.1| response regulator receiver [Salinispora tropica CNB-440] Length = 228 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA------RNLTE 176 GYV T LA V A G ++ L+ F R A LT Sbjct: 111 AGARGYVTKTISPDELAAAVRRVAEGDAVFSPRLAGFVLDAFAARPDAPVSDPELDQLTN 170 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L GY +EIA++L +S+ TV ++ + KL +R + A + Sbjct: 171 REREVLRLLARGYAYKEIAKELYISIKTVETHVSNVLRKLQMSSRYELSRWAADRRLV 228 >gi|332663404|ref|YP_004446192.1| LuxR family ATP-dependent transcriptional regulator [Haliscomenobacter hydrossis DSM 1100] gi|332332218|gb|AEE49319.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Haliscomenobacter hydrossis DSM 1100] Length = 147 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 38/62 (61%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL++RE L L GY+++EIAE L +S++T+ + + +KLD R QA+ KA G Sbjct: 86 NLSKREYEVLTLIAQGYSNQEIAETLFVSLNTIKTHSSNVFLKLDVKRRTQAVQKAKEIG 145 Query: 233 YI 234 + Sbjct: 146 LL 147 >gi|323130577|gb|ADX18007.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 238 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A+G + ++L E F + LTERE Sbjct: 123 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVNEYLRERERFGAQEDPFSILTEREL 182 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 183 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 227 >gi|326771785|ref|ZP_08231070.1| two-component system response regulator TcsR2 [Actinomyces viscosus C505] gi|326637918|gb|EGE38819.1| two-component system response regulator TcsR2 [Actinomyces viscosus C505] Length = 203 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ + LA + H + + + + LTERE L A Sbjct: 98 AGAAGFIVKDTPPEALAEAIRKV-HAGLRVIDPELAQ--ESVLLGPNPLTEREKEVLLAA 154 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA +L L TV YL SA K A NR +A A G++ Sbjct: 155 ATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGWL 203 >gi|298241316|ref|ZP_06965123.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554370|gb|EFH88234.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 215 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLT 175 + GY++ + + +G + T + F A L+ Sbjct: 96 MRAGARGYLLKGVRHEDMVRAIRAVGNGDAIFSPAIATKLVSYFSTLQPAHLAPVFPELS 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +RE L L G + EIAE+L +S +V Y+ + KL +R QAI +A G Sbjct: 156 QREREILALLAQGCKNAEIAERLVVSPKSVRNYVSNVISKLQVADRAQAILRAKDAGL 213 >gi|302558898|ref|ZP_07311240.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302476516|gb|EFL39609.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 237 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + + G ++ L+ F + LT+RE Sbjct: 122 GARGYVTKTITGTDLVDSIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 181 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 182 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 237 >gi|302542744|ref|ZP_07295086.1| DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302460362|gb|EFL23455.1| DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 201 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + +++ + LA+ + G + + D A LT RE L + Sbjct: 97 GADAFLVKDAPAAQLADAIRRVLRG---ERVIDPTLAAAALVDGASPLTAREREVLGASA 153 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T+ E+A LGLS TV YL +A K A NR A+ A G++ Sbjct: 154 DGSTNAELARALGLSQGTVRNYLSTAIQKTAARNRADAVRIARDKGWL 201 >gi|254392026|ref|ZP_05007217.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294814548|ref|ZP_06773191.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326442938|ref|ZP_08217672.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197705704|gb|EDY51516.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294327147|gb|EFG08790.1| Two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 233 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + + G ++ L+ F + LT+RE Sbjct: 118 GARGYVTKTITGTDLVDSIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 177 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 178 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 233 >gi|74318482|ref|YP_316222.1| two component LuxR family transcriptional regulator [Thiobacillus denitrificans ATCC 25259] gi|74057977|gb|AAZ98417.1| Two Component Transcriptional Regulator, LuxR family [Thiobacillus denitrificans ATCC 25259] Length = 221 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 7/115 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA----RNLTE 176 L NGY++ + E + + ++ G + ++L+ ++ A LT Sbjct: 96 LRAGANGYLLKSMEPDEVVDAILRAQRGETVVAPAMTAKLVKLYDQKGQDAGSLLDALTP 155 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L G +++ IA L +S TV ++ KL+ +R++A A+ Sbjct: 156 REREILSHLSRGESNKAIARTLDISHDTVKLHVRHILAKLNLSSRVEAAVFAVEH 210 >gi|50955085|ref|YP_062373.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951567|gb|AAT89268.1| two-component system, regulatory protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 223 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 9/114 (7%) Query: 129 NGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKRSSAAR--NLTERET 179 +G+V+ +E L + A GA + F + A +LT RE Sbjct: 105 SGFVLKDAEPEFLLAAIRTVHAGNAVIAAGATQNLFERFSTGRAAQPVPAEFASLTSRER 164 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LA G ++ EIA LS TV ++ KL +R+Q + A G Sbjct: 165 EIFALAARGLSNAEIAGSEFLSEATVKTHISRILGKLGLRDRVQMVVYAFEHGL 218 >gi|302539653|ref|ZP_07291995.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302457271|gb|EFL20364.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 219 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS-AARNLT 175 L +GYV+ + L G A +I + L+ + R +T Sbjct: 99 LAAGASGYVLKSVADRDLVEACRATMRGEPFLYPGAVNALIRNHLDRARHGEPLPERAIT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +RE L+L +G+TS++IA+ L +SV TV + + KL +R++ AIR G I Sbjct: 159 DREEEILKLVAEGHTSQQIADMLVISVKTVERHRANLLQKLGLKDRLELTRYAIRAGLI 217 >gi|168700050|ref|ZP_02732327.1| two-component transcriptional regulator, LuxR family protein [Gemmata obscuriglobus UQM 2246] Length = 219 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSS-------AARN 173 L +GY + + L + A G Y V + F K S A Sbjct: 96 LTAGASGYALKRAAPEELVRAIRTVAAGGVYLDPAVAQKVVGGFVKPSPKGATGAAGAGE 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE +L G+ ++EIA +L LSV TV Y A KL +R + ++ A + G+ Sbjct: 156 LSEREAEVARLTAAGHGNKEIAARLELSVKTVETYRARALEKLGLKSRAELVSYAFQQGW 215 Query: 234 I 234 + Sbjct: 216 L 216 >gi|167465455|ref|ZP_02330544.1| two-component response regulator LiaR [Paenibacillus larvae subsp. larvae BRL-230010] Length = 220 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 51/114 (44%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFKKRSSAARN--LTERETS 180 YV+ T L + + G +V ++R++ LT RE Sbjct: 103 AGATSYVLKTVSSEQLIEGIHKASQGIPEMNPEVSLALTRGLRQRNAQPDEEGLTIREKE 162 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L DG T+++IAE+L +S+ TV ++ + +K + +R Q A R G++ Sbjct: 163 VLLLIADGKTNKDIAEELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHRKGWV 216 >gi|41406787|ref|NP_959623.1| NarL_1 [Mycobacterium avium subsp. paratuberculosis K-10] gi|254773764|ref|ZP_05215280.1| NarL_1 [Mycobacterium avium subsp. avium ATCC 25291] gi|41395137|gb|AAS03006.1| NarL_1 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 217 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 4/116 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFKKRSSAARN-LTERET 179 L G+V+ S + V+ A G ++ ++R+ L+ RE Sbjct: 102 LQQGAAGFVLKDSTRSEIVKAVLDCAQGRDVVAPALVGGLAAEIRQRAEPTGPVLSARER 161 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G + IA +L ++ TV ++ KL +R A+A+A+R G + Sbjct: 162 EVLHRIARGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLLS 217 >gi|332162143|ref|YP_004298720.1| quorum-sensing transcriptional activator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|1723596|sp|P54295|YENR_YEREN RecName: Full=Transcriptional activator protein yenR gi|773400|emb|CAA53694.1| yenR [Yersinia enterocolitica] gi|318606195|emb|CBY27693.1| quorum-sensing transcriptional activator YpeR [Yersinia enterocolitica subsp. palearctica Y11] gi|325666373|gb|ADZ43017.1| quorum-sensing transcriptional activator [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330864049|emb|CBX74127.1| transcriptional activator protein yenR [Yersinia enterocolitica W22703] Length = 244 Score = 92.7 bits (229), Expect = 3e-17, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 62/196 (31%), Gaps = 16/196 (8%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + NY LD D + + P W + + +L Sbjct: 47 ISNYPLDWVKKYKKNSYHLIDPVILTAKDKVAPFAWDDNSVINKKSTDSAV-FKLAREYN 105 Query: 114 PFAGIAFPVRLGFHKNGYV-IFTSEFLMLANEVIIEAHGACYQVI-----TDFLELFKKR 167 G F + + + I ++ + IE + Q++ L L++ Sbjct: 106 IVNGYTFVLHDNSNNMATLNISNGSDDSISFDERIEINKEKIQMLLIITHEKMLGLYQSN 165 Query: 168 SSAARN---------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 S N + RE L A G T EI+ LG+ TV ++G+ KL Sbjct: 166 SDKNENRNTQIERDIFSPRENEILYWASVGKTYAEISIILGIKRSTVKFHIGNVVRKLGV 225 Query: 219 VNRIQAIAKAIRFGYI 234 +N AI I I Sbjct: 226 LNAKHAIRLGIELKLI 241 >gi|318061834|ref|ZP_07980555.1| two component system response regulator [Streptomyces sp. SA3_actG] Length = 221 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA-----ARNLT 175 LG GY+ + + + A G +V L + R +A +LT Sbjct: 103 LGAGARGYLTKNAGRQDIVRAIRAAAAGQSVLDREVQDRLLATVRARPTASGQGLPADLT 162 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L G G + IAEKL +S TV ++ + K +R +A+ +A+ G Sbjct: 163 PREREVLTLIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDRAEAVRRALTAGL 220 >gi|224825157|ref|ZP_03698263.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] gi|224602828|gb|EEG09005.1| two component transcriptional regulator, LuxR family [Lutiella nitroferrum 2002] Length = 215 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 1/109 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GYV+ + + + G Y L + + LTERE L L Sbjct: 106 AGARGYVLKDAPSQEIIAAIEAAVAGGSYYSHAVTHALIEP-APQPDPLTEREREVLLLL 164 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G++++ +A L +SV TV A+ + KL A N + A+ G+I Sbjct: 165 AAGHSNKMVAASLEISVRTVEAHRLNLRRKLGAENVAALVKYAMERGWI 213 >gi|84503539|ref|ZP_01001590.1| DNA-binding response regulator, LuxR family protein [Oceanicola batsensis HTCC2597] gi|84388029|gb|EAQ01077.1| DNA-binding response regulator, LuxR family protein [Oceanicola batsensis HTCC2597] Length = 196 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 7/111 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GF +G++ T L V G + + + +LT RE ++ Sbjct: 93 MGFGASGFLPKTLAPDELIRAVDRLVAGGTFLPDEAVARM-------SFSLTPREVEVVR 145 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 GY+++EIA +LG+ TV ++ + + KL+A NR A +A G + Sbjct: 146 GIAAGYSNKEIARELGVQEVTVKLHVKTLSRKLEARNRTHAAMRARDLGLV 196 >gi|315648982|ref|ZP_07902076.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] gi|315275663|gb|EFU39017.1| two component transcriptional regulator, LuxR family protein [Paenibacillus vortex V453] Length = 217 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 48/115 (41%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------SSAARNLTERET 179 YV+ T L + A + D E + + LTERE Sbjct: 102 AGAVSYVLKTVSADELIYA-LQGAFRGMPVMTKDVSEALTRGIRRHMVNGDESGLTEREK 160 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L +G +++EI E+L +S+ TV ++ + +K + +R Q A R G++ Sbjct: 161 EVLLLIAEGRSNKEIGEELHISIKTVKTHVSNLLMKCELDDRTQLAIYAHRKGWV 215 >gi|309812510|ref|ZP_07706262.1| putative nitrate/nitrite response regulator protein NarL [Dermacoccus sp. Ellin185] gi|308433529|gb|EFP57409.1| putative nitrate/nitrite response regulator protein NarL [Dermacoccus sp. Ellin185] Length = 198 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 41/98 (41%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + L V + G L + SS A LT RE L Sbjct: 101 AGASGYLLKDAPPADLVEAVHRASRGETVLAPAVAARLVNRLSSPAPTLTARELDVLDAV 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 G T++EIA+ L +S TV +L KL A +R + Sbjct: 161 AGGATNKEIAKHLFVSEATVKTHLVHINEKLGATSRTE 198 >gi|307296697|ref|ZP_07576516.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] gi|306877826|gb|EFN09051.1| Autoinducer-binding domain protein [Sphingobium chlorophenolicum L-1] Length = 225 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 76/228 (33%), Gaps = 26/228 (11%) Query: 22 HLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY-------GD 74 L+ KA F Y + +D + + + D P +E + D Sbjct: 3 DLMAEITKAMGFRHYALVHHVDLKPAVRSVHIV--------DYPQDWVERFQARRLYASD 54 Query: 75 DFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIF 134 + + W ++Q + ++ + + G P + NG F Sbjct: 55 PIHRASHRTNVGFAWSAVQSIISLTAADRSILAEAYEAGLGDGFTVPAHIPGELNGSCSF 114 Query: 135 TSEFLMLANEVIIEAHGACYQVITDF-------LELFKKRSSAARNLTERETSCLQLAGD 187 M A E++ Q++ F + S +LTER+ C+ L Sbjct: 115 A----MAAGEMLDHRQLPFVQLVGSFAFEAARKISRIHAPQSECPSLTERQAECVALVAR 170 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G T EI++ LG+ TV ++ A + R +A+ G I Sbjct: 171 GKTDWEISQILGIGQETVIQHVKDARDRYGVTKRTLLAIRALFEGQIS 218 >gi|296119033|ref|ZP_06837606.1| DNA-binding response regulator [Corynebacterium ammoniagenes DSM 20306] gi|295968131|gb|EFG81383.1| DNA-binding response regulator [Corynebacterium ammoniagenes DSM 20306] Length = 207 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ T+ A V HG + + + +++ LTERE + Sbjct: 100 LATGVQGFLPKTASAEEFAAAVRTV-HGGGRYIDPELAAMT--ITASDSPLTEREAEVVN 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 AG G + EEIA+ + L+ T YL SA K+ A NR +A +A G+I Sbjct: 157 AAGQGGSVEEIAQLVFLAPGTTRNYLSSAMTKIGAQNRFEAFLRAREKGWI 207 >gi|116329279|ref|YP_798999.1| receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330114|ref|YP_799832.1| receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122023|gb|ABJ80066.1| Receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123803|gb|ABJ75074.1| Receiver component of a two-component response regulator [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 221 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 48/124 (38%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFL----------ELFKKRSSA 170 L NGYV+ L + G Y + FL E + A Sbjct: 96 LELGINGYVLKDDAGNDLLRAIEAVHKGETYLSPGITAHFLSGFVGSGKPGEENQDAKKA 155 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L+L +G ++E I + LG+S TV + + KL+ + AIR Sbjct: 156 FSVLSDREREILKLVAEGNSNESIGKILGISPATVKVHRANIMKKLNLHKVADLVMYAIR 215 Query: 231 FGYI 234 G I Sbjct: 216 AGLI 219 >gi|11344597|gb|AAG34369.1|AF197465_1 nitrate/nitrite response regulator [Pseudomonas fluorescens] Length = 215 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 8/114 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTER 177 L NGY++ E +L + +GA +V+ L A LTER Sbjct: 99 LRLDANGYLLKDMEPELLIQYIRDALNGALVISPGLTRVMAQ--ALRSPPRQADVELTER 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L+ GY+++ I KLG++ TV ++ + KL +R++A A+ Sbjct: 157 ERQVLKTIAGGYSNKVIGHKLGITEGTVKVHVKNLLHKLGLRSRVEAAVWAMEH 210 >gi|256396759|ref|YP_003118323.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362985|gb|ACU76482.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 219 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDF--LELFKKRSSAAR-- 172 L G+++ + L + + + A G +++ + L + + A + Sbjct: 94 LRRGATGFLLKDTPPRDLISAMRVVARGDAMLSPPVTKRLLDHYTGLRVADRAEQAVKLL 153 Query: 173 -NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G ++ +I + L LS TV A++ KL NR+QA Sbjct: 154 AELTPRERDVLAELARGLSNAQIGKSLFLSEATVKAHVSRVMAKLGVANRVQAALVGRDA 213 Query: 232 GYI 234 G + Sbjct: 214 GLL 216 >gi|223939687|ref|ZP_03631560.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223891644|gb|EEF58132.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 207 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 5/109 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRS--SAARNLTERE 178 L +GY++ + L V G Q+ ++ F K S L+ E Sbjct: 95 LKAGASGYLLKRTSSSKLLEAVRDVHAGGSPMSPQLARRLVQFFSKPQDVSPVSQLSPGE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LQL GY +EIAEK+G+S TV Y+ + KL +R +A+ K Sbjct: 155 REFLQLLSKGYVYKEIAEKMGISTDTVRYYVRTVYEKLHVHSRTEAVVK 203 >gi|154487087|ref|ZP_02028494.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis L2-32] gi|154084950|gb|EDN83995.1| hypothetical protein BIFADO_00927 [Bifidobacterium adolescentis L2-32] Length = 249 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 28/137 (20%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------------------ 167 +G+++ +E L N + G + L +K Sbjct: 113 AGASGFLLKDTEPETLLNSIRTVYQGNAIIAPSATKRLIEKMMDGDFAGTAAAAPVSAMS 172 Query: 168 ----------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LT+RE L G +++EIA+KL +S+ TV ++ K++ Sbjct: 173 ASASTATMYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKIN 232 Query: 218 AVNRIQAIAKAIRFGYI 234 A +R+QA+ A + Sbjct: 233 ARDRVQAVVFAYENHLV 249 >gi|290475594|ref|YP_003468482.1| response regulator in two-component regulatory system with NarQ (or NarX), regulates anaerobic respiratory gene expression [Xenorhabdus bovienii SS-2004] gi|289174915|emb|CBJ81716.1| response regulator in two-component regulatory system with NarQ (or NarX), regulates anaerobic respiratory gene expression [Xenorhabdus bovienii SS-2004] Length = 211 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 2/109 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 NGY++ E L +++ A+G + + +L LT+RE L Sbjct: 97 DAGANGYLLKDIELTPLISKIKKAANGDAVYSEKVYQYLSTRHLYIDPLSKLTKRELDVL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + +G T++EIA+ L +S TV + + KL + +R++A +R Sbjct: 157 KEISEGMTNKEIADFLFISEETVKVHTRNLLKKLKSRSRLEATIIYLRH 205 >gi|297564146|ref|YP_003683119.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848595|gb|ADH70613.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 223 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T LA+ ++ A G ++ L+ F + LT+RE Sbjct: 108 GARGYVTKTISGRELADAIVRVADGDAVFSPRLAGFVLDAFSATDAPPVDPELDRLTQRE 167 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ GY +E+A++L +SV TV ++ S KL NR + A + Sbjct: 168 REVLRHIARGYAYKEVAKELFISVKTVETHVSSVLRKLQLSNRHELSRWATARRLV 223 >gi|254477132|ref|ZP_05090518.1| two component transcriptional regulator, LuxR family [Ruegeria sp. R11] gi|214031375|gb|EEB72210.1| two component transcriptional regulator, LuxR family [Ruegeria sp. R11] Length = 204 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCL 182 L G++ T L N V + G Y + + + S A L+ RE L Sbjct: 93 LDAGAIGFIPKTMGAQSLLNAVRFMSAGEIYVPVELMRKEAEAPSHPLADKLSPREIEVL 152 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G +++EIA +L L T+ ++ + KLDA NR QA A G Sbjct: 153 DGLCRGLSNKEIARELELQEVTIKLHVRTLCRKLDAKNRTQAALTAKEAGL 203 >gi|163859318|ref|YP_001633616.1| nitrate/nitrite response regulator protein [Bordetella petrii DSM 12804] gi|163263046|emb|CAP45349.1| nitrate/nitrite response regulator protein [Bordetella petrii] Length = 220 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 51/124 (41%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSS---------AA 171 L GY++ + L + A G + ++ F++++S Sbjct: 95 LRDGARGYLVKNIDAEALTAAIRRAATGEPVIADNMTAKLVDRFREQASQGAGNAANAER 154 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE +Q G +++ IA +L ++ TV ++ + KL+ +R+Q A+ Sbjct: 155 TRLTTREREIVQCLAHGASNKVIARQLDIAESTVKIHVQNILKKLNLTSRVQVAVYAVEN 214 Query: 232 GYIC 235 G + Sbjct: 215 GLVA 218 >gi|148985585|ref|ZP_01818774.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|147922305|gb|EDK73426.1| DNA-binding response regulator [Streptococcus pneumoniae SP3-BS71] gi|301800762|emb|CBW33411.1| response regulator protein [Streptococcus pneumoniae OXC141] Length = 199 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + LTE+E + L+ Sbjct: 95 AGVDAYVLKERSIADLMQTLHTVLEGRKEY----SPELMEVVMTRPNPLTEQEIAVLKGI 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L S T+ Y+ + KLDA NR +A A G++ Sbjct: 151 ARGLSNQEIADQLYFSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL 199 >gi|118464868|ref|YP_880140.1| LuxR family transcriptional regulator [Mycobacterium avium 104] gi|118166155|gb|ABK67052.1| DNA-binding response regulator, LuxR family protein [Mycobacterium avium 104] Length = 183 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 4/116 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFLELFKKRSSAARN-LTERET 179 L G+V+ S + V+ A G ++ ++R+ L+ RE Sbjct: 68 LQQGAAGFVLKDSTRSEIVKAVLDCAQGRDVVAPALVGGLAAEIRQRAEPTGPVLSARER 127 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G + IA +L ++ TV ++ KL +R A+A+A+R G + Sbjct: 128 EVLHRIARGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLLS 183 >gi|73537441|ref|YP_297808.1| LuxR transcriptional regulator [Ralstonia eutropha JMP134] gi|72120778|gb|AAZ62964.1| regulatory protein, LuxR:Tetratricopeptide TPR_4 [Ralstonia eutropha JMP134] Length = 947 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/94 (29%), Positives = 46/94 (48%) Query: 141 LANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 L + + GAC Q + LT +E LQL +G+++ +A++L + Sbjct: 854 LPSAYVERLLGACGQGPDVAPSGQAAPAPLVEPLTPKEQKVLQLLAEGFSNVAMAQRLFV 913 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S TV +L + + KL A NR QA+A A + G + Sbjct: 914 SETTVRTHLRNISAKLHASNRTQAVAIARQLGLL 947 >gi|332703486|ref|ZP_08423574.1| transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] gi|332553635|gb|EGJ50679.1| transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] Length = 213 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 13/164 (7%) Query: 76 FLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT 135 L+ S LP W + + L++ L A L +G Sbjct: 52 LLWDCLSNNLPKFWTMCSQRAENGNGPCLALINAPHELTLELQA----LRNGADGLFREC 107 Query: 136 SEFLMLANEVIIEAHG---ACYQVITDFLELFKK------RSSAARNLTERETSCLQLAG 186 +L + HG +V++ F+ +K +S+ LT RE L+ Sbjct: 108 DPPDLLIKGIASILHGDLWYSREVLSRFVRDERKVRPQATQSADTSTLTPREREVLERIA 167 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 G ++EEIA+ L +S TV + + K+ NRIQA A++ Sbjct: 168 AGASNEEIAKNLFISPSTVKTHAYNIYAKIRVPNRIQAALWAVQ 211 >gi|328880209|emb|CCA53448.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 200 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 9/116 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRS--SAARNL 174 L G+++ + +LA V A G +++ F +L R + Sbjct: 77 LRAGARGFLLKDTGPDLLAQAVRSAADGEALIAPSVTVRLLQAFADLPAGRPVTQPVSPV 136 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T RE L G T+ EIA+ L +S+ TV +L S KL A NR++ A Sbjct: 137 TAREEQVLLAVARGLTNTEIADALHISLSTVKTHLASLMAKLGARNRVEIAMWAYE 192 >gi|294811923|ref|ZP_06770566.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294324522|gb|EFG06165.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 234 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA-----ARNLT 175 L G+++ L V + A + R +A AR LT Sbjct: 113 LRAGAAGFLLKRVAADELIQAVRLMARSDSLLFPAAVRSLAAEHGARRTAPVPPWARKLT 172 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ERE L+L G T+ EIAE++G+ TV +++ + K A +R QA+ A G+I Sbjct: 173 EREADTLRLMAAGLTNGEIAERMGVGPATVKSHVAAVLAKTGARHRTQAVILAYESGFIT 232 >gi|291455021|ref|ZP_06594411.1| two component system response regulator [Streptomyces albus J1074] gi|291357970|gb|EFE84872.1| two component system response regulator [Streptomyces albus J1074] Length = 297 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 11/119 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-----------QVITDFLELFKKRSSAARNL 174 G ++ + + + V A G + + +L ++ L Sbjct: 96 AGARGLLLKSGGQEAILSGVRDVAAGGIAMSTEFVSQILKALHSAYLPAAERPFRDISLL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE +L G T+++I+ +L LS TV ++ KLD NR+ A+ A G Sbjct: 156 TPREMQVFRLVSQGLTNQQISNRLVLSEATVKSHFNRICHKLDLRNRVDAVILAYETGI 214 >gi|225021681|ref|ZP_03710873.1| hypothetical protein CORMATOL_01709 [Corynebacterium matruchotii ATCC 33806] gi|305681258|ref|ZP_07404065.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|224945672|gb|EEG26881.1| hypothetical protein CORMATOL_01709 [Corynebacterium matruchotii ATCC 33806] gi|305659463|gb|EFM48963.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 200 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 3/110 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +GYV+ + LA V HG +V + L +R + LT RE Sbjct: 94 DAGVSGYVVKDTPPDELAAAVRRVHHG--LRVFDNHLVEAARR-AGNNPLTPREIEICNA 150 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A D + +IA ++ LS TV +L + K A N +AI AI G++ Sbjct: 151 AKDHASVAQIANRIFLSEGTVRNHLSNVMAKTGARNYHEAIHAAITKGWL 200 >gi|225155028|ref|ZP_03723524.1| response regulator receiver protein [Opitutaceae bacterium TAV2] gi|224804198|gb|EEG22425.1| response regulator receiver protein [Opitutaceae bacterium TAV2] Length = 217 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELF-----KKRSSAARNLTE 176 L +G+V T+ + + A+G Y I L + + + +LT+ Sbjct: 94 LEAGAHGFVEKTAGLMEFKRGLETVANGGTYFGPAIAAMLRMVVANSGSRAPAGVDSLTD 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQL + YT+++IA KL +S TV+ + + KL+ + A+ G I Sbjct: 154 REREILQLVAESYTTKDIATKLDISAKTVDNHRTNLMRKLNLHDVASLTRYAVEIGLI 211 >gi|158313275|ref|YP_001505783.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158108680|gb|ABW10877.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 218 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN---LTER 177 L GY++ ++ + + A G V L F + LTER Sbjct: 100 LRAGARGYLLKGAQQKDVVRTIGAVARGDAVFGPDVAHRVLRTFTSPPAENAPFPELTER 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L +G+ + IA L L+ TV + + KL A +R AI +A R G Sbjct: 160 EREVLSLLANGWPNSRIARHLQLTPKTVANNVSNILAKLHAPDRTAAILRARRAGL 215 >gi|318076428|ref|ZP_07983760.1| two component system response regulator [Streptomyces sp. SA3_actF] gi|333026664|ref|ZP_08454728.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332746516|gb|EGJ76957.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 209 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA-----ARNLT 175 LG GY+ + + + A G +V L + R +A +LT Sbjct: 91 LGAGARGYLTKNAGRQDIVRAIRAAAAGQSVLDREVQDRLLATVRARPTASGQGLPADLT 150 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L G G + IAEKL +S TV ++ + K +R +A+ +A+ G Sbjct: 151 PREREVLTLIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDRAEAVRRALTAGL 208 >gi|310821776|ref|YP_003954134.1| DNA-binding response regulator [Stigmatella aurantiaca DW4/3-1] gi|309394848|gb|ADO72307.1| DNA-binding response regulator, LuxR family [Stigmatella aurantiaca DW4/3-1] Length = 254 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 37/74 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E + + L++RE LQL G ++ E A L LS T+ +L KL+ NR Sbjct: 180 EDTPDADALLKPLSDREREILQLIAKGVSNSEAARLLNLSKATIRTHLEHIYRKLEVTNR 239 Query: 222 IQAIAKAIRFGYIC 235 ++A+ + IR G I Sbjct: 240 VEAVTEGIRKGLIS 253 >gi|295394380|ref|ZP_06804604.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972732|gb|EFG48583.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 221 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 48/121 (39%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA----------RN 173 L +G+++ + +L + + G T L + +A Sbjct: 101 LRSGASGFLLKDARPEVLLDSIRQAHVGGAVIAPTTTRRLLETVVAAPTVPDEHAQKLER 160 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE +L G ++ EIA +L ++ TV ++ KL+ +RI A+ A G Sbjct: 161 LTAREREVFELVARGKSNAEIAGELFMAGPTVKTHVSHILTKLEVRDRIHAVIFAYEAGV 220 Query: 234 I 234 + Sbjct: 221 V 221 >gi|170739988|ref|YP_001768643.1| LuxR family transcriptional regulator [Methylobacterium sp. 4-46] gi|168194262|gb|ACA16209.1| transcriptional regulator, LuxR family [Methylobacterium sp. 4-46] Length = 118 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/67 (41%), Positives = 38/67 (56%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L L +G +++ IA +LG+SVHT ++GS KLDA R A+A Sbjct: 50 PAPDPGLTPREIEVLGLLAEGASNKAIARRLGISVHTAKFHVGSLLDKLDATGRTDAVAH 109 Query: 228 AIRFGYI 234 A R G I Sbjct: 110 AARRGVI 116 >gi|224477373|ref|YP_002634979.1| response regulator of the two-component regulatory [Staphylococcus carnosus subsp. carnosus TM300] gi|81321267|sp|Q7WZY4|NREC_STACT RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|32330234|gb|AAP79640.1| NreC [Staphylococcus carnosus] gi|222421980|emb|CAL28794.1| response regulator of the two-component regulatory [Staphylococcus carnosus subsp. carnosus TM300] Length = 217 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L GY++ + L + V G Y ++ +F+ + +++ + Sbjct: 94 LRNGAKGYILKNAPDEQLISAVRTVYRGDTYIDPKMTTSLVNEFVNNTGQDANSTNDPFR 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L GY ++EIAEKL +SV TV A+ KL+ ++ + + A++ Sbjct: 154 ILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYALKKK 213 Query: 233 YI 234 + Sbjct: 214 LL 215 >gi|50841545|ref|YP_054772.1| two-component response regulator [Propionibacterium acnes KPA171202] gi|289424302|ref|ZP_06426085.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289427423|ref|ZP_06429136.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|295129584|ref|YP_003580247.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|50839147|gb|AAT81814.1| two-component response regulator [Propionibacterium acnes KPA171202] gi|289154999|gb|EFD03681.1| response regulator receiver domain protein [Propionibacterium acnes SK187] gi|289159353|gb|EFD07544.1| response regulator receiver domain protein [Propionibacterium acnes J165] gi|291377074|gb|ADE00929.1| transcriptional regulator, LuxR family [Propionibacterium acnes SK137] gi|313764963|gb|EFS36327.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA1] gi|313771147|gb|EFS37113.1| response regulator receiver domain protein [Propionibacterium acnes HL074PA1] gi|313792510|gb|EFS40596.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA1] gi|313803511|gb|EFS44693.1| response regulator receiver domain protein [Propionibacterium acnes HL110PA2] gi|313806915|gb|EFS45413.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA2] gi|313811827|gb|EFS49541.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA1] gi|313814163|gb|EFS51877.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA1] gi|313815476|gb|EFS53190.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA1] gi|313817698|gb|EFS55412.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA2] gi|313821475|gb|EFS59189.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA1] gi|313824580|gb|EFS62294.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA2] gi|313826251|gb|EFS63965.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA1] gi|313829041|gb|EFS66755.1| response regulator receiver domain protein [Propionibacterium acnes HL063PA2] gi|313832822|gb|EFS70536.1| response regulator receiver domain protein [Propionibacterium acnes HL056PA1] gi|313839682|gb|EFS77396.1| response regulator receiver domain protein [Propionibacterium acnes HL086PA1] gi|314916271|gb|EFS80102.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA4] gi|314917541|gb|EFS81372.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA1] gi|314921874|gb|EFS85705.1| response regulator receiver domain protein [Propionibacterium acnes HL050PA3] gi|314926277|gb|EFS90108.1| response regulator receiver domain protein [Propionibacterium acnes HL036PA3] gi|314955212|gb|EFS99617.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA1] gi|314959216|gb|EFT03318.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA1] gi|314961718|gb|EFT05819.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA2] gi|314964222|gb|EFT08322.1| response regulator receiver domain protein [Propionibacterium acnes HL082PA1] gi|314969024|gb|EFT13122.1| response regulator receiver domain protein [Propionibacterium acnes HL037PA1] gi|314975255|gb|EFT19350.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA1] gi|314977670|gb|EFT21765.1| response regulator receiver domain protein [Propionibacterium acnes HL045PA1] gi|314985145|gb|EFT29237.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA1] gi|314990454|gb|EFT34545.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA3] gi|315078871|gb|EFT50889.1| response regulator receiver domain protein [Propionibacterium acnes HL053PA2] gi|315081685|gb|EFT53661.1| response regulator receiver domain protein [Propionibacterium acnes HL078PA1] gi|315083141|gb|EFT55117.1| response regulator receiver domain protein [Propionibacterium acnes HL027PA2] gi|315086668|gb|EFT58644.1| response regulator receiver domain protein [Propionibacterium acnes HL002PA3] gi|315097105|gb|EFT69081.1| response regulator receiver domain protein [Propionibacterium acnes HL038PA1] gi|315099710|gb|EFT71686.1| response regulator receiver domain protein [Propionibacterium acnes HL059PA2] gi|315102251|gb|EFT74227.1| response regulator receiver domain protein [Propionibacterium acnes HL046PA1] gi|315107664|gb|EFT79640.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA1] gi|315109807|gb|EFT81783.1| response regulator receiver domain protein [Propionibacterium acnes HL030PA2] gi|327332558|gb|EGE74293.1| two-component system response regulator [Propionibacterium acnes HL096PA2] gi|327333731|gb|EGE75448.1| two-component system response regulator [Propionibacterium acnes HL096PA3] gi|327334616|gb|EGE76327.1| two-component system response regulator [Propionibacterium acnes HL097PA1] gi|327444410|gb|EGE91064.1| response regulator receiver domain protein [Propionibacterium acnes HL013PA2] gi|327446663|gb|EGE93317.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA2] gi|327448894|gb|EGE95548.1| response regulator receiver domain protein [Propionibacterium acnes HL043PA1] gi|327454307|gb|EGF00962.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA3] gi|327456372|gb|EGF03027.1| response regulator receiver domain protein [Propionibacterium acnes HL083PA2] gi|327457356|gb|EGF04011.1| response regulator receiver domain protein [Propionibacterium acnes HL092PA1] gi|328756067|gb|EGF69683.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] gi|328757917|gb|EGF71533.1| response regulator receiver domain protein [Propionibacterium acnes HL020PA1] gi|328758912|gb|EGF72528.1| response regulator receiver domain protein [Propionibacterium acnes HL025PA2] gi|328759757|gb|EGF73353.1| two-component system response regulator [Propionibacterium acnes HL099PA1] gi|332674453|gb|AEE71269.1| two-component response regulator [Propionibacterium acnes 266] Length = 218 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G+++ + L + + A G A +++ + AA Sbjct: 97 LKAGASGFLLKDARPTELLSAIRNVADGDAVVAPSATRRLLDHVVPTLPNDPKAADKRLS 156 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G T+ EIA+ L ++ TV ++G KL+ +R+ + A G Sbjct: 157 VLTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVG 216 Query: 233 YI 234 + Sbjct: 217 LL 218 >gi|4096799|gb|AAD10462.1| orfx; function unknown; similar to response regulators of two-component regulatory systems; Method: conceptual translation supplied by author [Staphylococcus carnosus] Length = 185 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L GY++ + L + V G Y ++ +F+ + +++ + Sbjct: 62 LRNGAKGYILKNAPDEQLISAVRTVYRGDTYIDPKMTTSLVNEFVNNTGQDANSTNDPFR 121 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L GY ++EIAEKL +SV TV A+ KL+ ++ + + A++ Sbjct: 122 ILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMQKLNLKSKPELVEYALKKK 181 Query: 233 YI 234 + Sbjct: 182 LL 183 >gi|320536217|ref|ZP_08036263.1| response regulator receiver domain protein [Treponema phagedenis F0421] gi|320146919|gb|EFW38489.1| response regulator receiver domain protein [Treponema phagedenis F0421] Length = 201 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 2/106 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L F GY++ + ++ I A + Q++ ++ +L ERE Sbjct: 92 LNFGCRGYILKQNIESLVPALNAIAAGSIVFDSQIMNKIPTKKPQKEKFFEDLNEREADI 151 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+L DG ++EIA++L LS T+ Y+ S KL +R Q + Sbjct: 152 LELIADGLNNKEIAQRLYLSEGTIRNYVSSILEKLALRDRTQLVVY 197 >gi|289768636|ref|ZP_06528014.1| two-component system response regulator [Streptomyces lividans TK24] gi|289698835|gb|EFD66264.1| two-component system response regulator [Streptomyces lividans TK24] Length = 227 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 11/125 (8%) Query: 120 FPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------ 173 FP L GY+ + + V G + L + S + Sbjct: 99 FPA-LHAGARGYLTKDAGGDEIVRAVHSVLSGDAGLAPSIQRRLLEWLSESEPRPTGPPE 157 Query: 174 ----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RET L L +G T+ +IA +L +S TV ++ + K +R QA+ A Sbjct: 158 PPDGLTTRETEVLVLIAEGLTNHQIASRLRVSTATVKTHINNLFAKTGLKDRAQAVRYAY 217 Query: 230 RFGYI 234 G + Sbjct: 218 GKGLV 222 >gi|283455737|ref|YP_003360301.1| two-component response regulator [Bifidobacterium dentium Bd1] gi|283102371|gb|ADB09477.1| Two-component response regulator [Bifidobacterium dentium Bd1] Length = 251 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 27/136 (19%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLE-----------LFKKR 167 +G+++ +E L N + A A ++I +E Sbjct: 116 AGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIERMMEGGLTDQDSLTIPASAD 175 Query: 168 SSAARN---------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 ++ +R LT+RE L G +++EIA++L +S+ TV ++ K++A Sbjct: 176 TAPSRPAYTDPELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHILSKINA 235 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA+ A + Sbjct: 236 RDRVQAVVFAYENHLV 251 >gi|77918586|ref|YP_356401.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77544669|gb|ABA88231.1| transcriptional regulator, LuxR family [Pelobacter carbinolicus DSM 2380] Length = 223 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 13/122 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARN------ 173 +GYV+ + + LA+ + + G + D+ ++ S A Sbjct: 101 AGADGYVLKSIDINELADLIRAFSCGEHPMSPYLMDLAVDWHASEQEEESPADKDDESDA 160 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G ++EI+ L +S TV ++ + KL+ +R++A+ A Sbjct: 161 FLTRREQQILSCLAQGQGNKEISNALFISTETVKTHIKNIFKKLEVKSRLEAVIAAKEKK 220 Query: 233 YI 234 I Sbjct: 221 LI 222 >gi|323497110|ref|ZP_08102130.1| two component LuxR family transcriptional regulator [Vibrio sinaloensis DSM 21326] gi|323317685|gb|EGA70676.1| two component LuxR family transcriptional regulator [Vibrio sinaloensis DSM 21326] Length = 209 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 4/114 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLE-LFKKRSSAARNLTERETSC 181 GYV+ L + A G Y Q LE + ++ L++RE+ Sbjct: 96 AGAKGYVLKDVGSEELVMAINQVAQGRSYLCPQASDRLLEQINEEPEQKDDTLSKRESDV 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+ +G ++EIA+ L +SV TV + KL A + + A++ G + Sbjct: 156 LKAIANGACNKEIADSLHISVRTVETHRLRIKKKLGATSTAALVKLALQKGLVT 209 >gi|312278646|gb|ADQ63303.1| Two-component system transcriptional regulator (CheY domain and HTH-like DNA-binding domain), putative [Streptococcus thermophilus ND03] Length = 200 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + YV+ L + G EL + + L++RE L Sbjct: 93 LAAQVDAYVLKERSISDLMATIHTVLAGQKEY----SPELVEGVAFDNNPLSQREQEVLA 148 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T++EIAE L LS T+ Y+ + KLDA NR A+ A ++ Sbjct: 149 MVAQGSTNQEIAESLFLSNGTIRNYMTAILTKLDAGNRTDAVRIAKEKDWL 199 >gi|300744173|ref|ZP_07073192.1| DNA-binding response regulator [Rothia dentocariosa M567] gi|300379898|gb|EFJ76462.1| DNA-binding response regulator [Rothia dentocariosa M567] Length = 208 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 54/111 (48%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G+V+ LA V A G +V+ L K + LT RET L+ Sbjct: 101 LEAGASGFVVKDGTASQLAQAVRRTAAG--LRVVDSVLAEEAKWQ-GSSPLTGRETEVLR 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A + +EIA LGLS TV +L +A K+DA+NR +A+ A G++ Sbjct: 158 AAETAGSVKEIAGMLGLSSGTVRNHLSAAMAKIDAINRHEAVRIARDNGWL 208 >gi|291614188|ref|YP_003524345.1| LuxR family transcriptional regulator [Sideroxydans lithotrophicus ES-1] gi|291584300|gb|ADE11958.1| two component transcriptional regulator, LuxR family [Sideroxydans lithotrophicus ES-1] Length = 235 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 10/117 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------LTE 176 GY++ + + + A G + +++ + S LTE Sbjct: 98 AGVRGYLLKDMAPEEVVDAIRRVAAGELVVAPTMTVKMIDMLRGDQSGQEPKNSLKLLTE 157 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI-QAIAKAIRFG 232 RE LQL G +++ IA L +S TV ++ KL+ +R+ A+ A G Sbjct: 158 REREILQLLSRGESNKAIALTLSISYDTVKQHVRHILNKLNLSSRVKAAVLFAKEQG 214 >gi|115376214|ref|ZP_01463456.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] gi|115366787|gb|EAU65780.1| two-component response regulator [Stigmatella aurantiaca DW4/3-1] Length = 202 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 37/74 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E + + L++RE LQL G ++ E A L LS T+ +L KL+ NR Sbjct: 128 EDTPDADALLKPLSDREREILQLIAKGVSNSEAARLLNLSKATIRTHLEHIYRKLEVTNR 187 Query: 222 IQAIAKAIRFGYIC 235 ++A+ + IR G I Sbjct: 188 VEAVTEGIRKGLIS 201 >gi|227114479|ref|ZP_03828135.1| quorum-sensing transcriptional regulator [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 242 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 39/195 (20%), Positives = 68/195 (34%), Gaps = 26/195 (13%) Query: 62 GDIPNILIETYGDDFLFHFNSGLL-------PIIWQSIQEETVIESSGQLS--VRLEGGL 112 P+ + Y ++ H + +L P W ++ VI + QL+ L Sbjct: 48 SSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSW---EKSLVINTRLQLAKIFDLSKKY 104 Query: 113 LPFAGIAFPVRLGFHKNGYVI-------------FTSEFLMLANEVIIEAHGACYQVITD 159 G F + + F E ++I+A+ + + Sbjct: 105 NIINGYTFVLHDHGDNLAMLSIIVDSSYPDDIDTFIEEKKDTFQMLLIDAYEKIISLCRE 164 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +E KK + ++RE L A G T E+A LG+ TV ++G+ KL + Sbjct: 165 MIE-NKKPLNNKEIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVL 223 Query: 220 NRIQAIAKAIRFGYI 234 N AI + I Sbjct: 224 NAKHAIRLGVELQLI 238 >gi|126660738|ref|ZP_01731836.1| two-component response regulator [Cyanothece sp. CCY0110] gi|126617979|gb|EAZ88750.1| two-component response regulator [Cyanothece sp. CCY0110] Length = 245 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 43/77 (55%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 D L+ ++ + +LT +E L+L G + +IAE+L ++V TV ++ S KL Sbjct: 168 IDALDEDTQQMINSSSLTPKELEVLELIVAGCNNAQIAERLFVTVGTVKTHVRSILNKLC 227 Query: 218 AVNRIQAIAKAIRFGYI 234 A +R QA +A+R G + Sbjct: 228 ANDRTQAAVRALRSGLV 244 >gi|306823235|ref|ZP_07456611.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679] gi|309801640|ref|ZP_07695761.1| response regulator receiver domain protein [Bifidobacterium dentium JCVIHMP022] gi|304553867|gb|EFM41778.1| transcriptional regulator [Bifidobacterium dentium ATCC 27679] gi|308221772|gb|EFO78063.1| response regulator receiver domain protein [Bifidobacterium dentium JCVIHMP022] Length = 248 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 27/136 (19%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLE-----------LFKKR 167 +G+++ +E L N + A A ++I +E Sbjct: 113 AGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIERMMEGGLTDQDSLTIPTSAD 172 Query: 168 SSAARN---------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 ++ +R LT+RE L G +++EIA++L +S+ TV ++ K++A Sbjct: 173 TAPSRPAYTDPELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHILSKINA 232 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA+ A + Sbjct: 233 RDRVQAVVFAYENHLV 248 >gi|239942277|ref|ZP_04694214.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239988743|ref|ZP_04709407.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291445736|ref|ZP_06585126.1| response regulatory protein [Streptomyces roseosporus NRRL 15998] gi|291348683|gb|EFE75587.1| response regulatory protein [Streptomyces roseosporus NRRL 15998] Length = 214 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 39/109 (35%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + S +LT+RE L Sbjct: 105 AGATGYLLKAERPEELFAAIRSAAQGRTTLSAPVASRVMARMRSPRPSLTDRERDILAQL 164 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +IA L +S TV +LG KL R A++ A + Sbjct: 165 SQGLGNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLL 213 >gi|223934475|ref|ZP_03626396.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896938|gb|EEF63378.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 231 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 12/116 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK---------RSSAA 171 L GY++ + L + A G Q+ ++ F++ R+ Sbjct: 112 LMAGATGYLLKRTPKDKLLEAIREIASGGAPMSRQIARRVVQFFQEIKQEPKEITRAPEI 171 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++LTERE L L G+ +EIA+ L +S TV ++ + KL +R +A K Sbjct: 172 KSLTEREEQVLALLSKGHAYKEIADLLNISFETVRTHVRTIYDKLHVHSRTEATLK 227 >gi|158333495|ref|YP_001514667.1| two-component LuxR family transcriptional regulator [Acaryochloris marina MBIC11017] gi|158303736|gb|ABW25353.1| two-component transcriptional regulator, LuxR family [Acaryochloris marina MBIC11017] Length = 225 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT---------DFLELFKKRSSAARNL 174 + +GYV + + L + + F E +S +L Sbjct: 104 MRAGADGYVFKSQLAMNLHQAIQTVLKNEVFLPPDAATGFFRSFHFYEGRAVQSEQTLHL 163 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L G +++ IA L +++ TV A+L + KL+ +R QAI KA++ G + Sbjct: 164 TAREKQVLHWLVQGASNQAIANHLHITIATVKAHLTAVFEKLEVKSRSQAIVKALKLGLV 223 Query: 235 C 235 Sbjct: 224 T 224 >gi|126665815|ref|ZP_01736796.1| DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Marinobacter sp. ELB17] gi|126629749|gb|EBA00366.1| DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Marinobacter sp. ELB17] Length = 219 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAAR---NL 174 L +GY++ E + ++ A G ++ D L K + A +L Sbjct: 98 LRAGADGYLLKDMEPEDMIKQLHQAAVGKLVISERLTSLLADALRNNKSQQPARPDFDSL 157 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L L +G +++ I KL +S TV ++ KL+ +R++ A+ G Sbjct: 158 TPREKDILNLIAEGLSNKMIGRKLDISDGTVKVHVKHLLKKLNLRSRVEVAVWAVEEGL 216 >gi|116694572|ref|YP_728783.1| response regulator [Ralstonia eutropha H16] gi|113529071|emb|CAJ95418.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 235 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFL----------ELFKKR 167 L GY++ + L ++ + G + I D + ++ +R Sbjct: 108 LQAGATGYLLKERDDLEISLSIRSALRGGAPIDPFVARHILDLVATTAPLPGGAQIHARR 167 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A L+ RE L L G G T+ EIA+ L LS TV ++ + KL +R QA+ + Sbjct: 168 LVGASPLSAREIEILSLVGKGLTNREIADLLSLSRLTVECHIRNIYKKLAVHSRTQAVFE 227 Query: 228 AIRFGYI 234 A G + Sbjct: 228 ARAHGLL 234 >gi|160879389|ref|YP_001558357.1| two component LuxR family transcriptional regulator [Clostridium phytofermentans ISDg] gi|160428055|gb|ABX41618.1| two component transcriptional regulator, LuxR family [Clostridium phytofermentans ISDg] Length = 207 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKR---SSAARNLTER 177 L GY++ ++ + + + G VIT +L +K+ A LT++ Sbjct: 93 LKIGAKGYLLK-QDYDSIQPALKAVSMGQSVFGSDVITKLPDLMQKKKEFPYGAYQLTKK 151 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 E L + +G +++EIA+ + LS TV YL + +KLD +R QA Sbjct: 152 EYELLTMVAEGLSNKEIADVMFLSEGTVRNYLSNLMLKLDVRDRTQAAI 200 >gi|325134502|gb|EGC57147.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M13399] gi|325205973|gb|ADZ01426.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M04-240196] Length = 218 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ L + A G ++ ++ + + A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKVAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 LEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|324998048|ref|ZP_08119160.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 198 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 7/105 (6%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 Y+ + + L + + + + + + + LTERE L+ G + Sbjct: 101 YLRWDASRPELVAAL-------AHTLASTSVPTPRVPTDPGVQLTERELQVLRGMSQGKS 153 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + +I +L LS TV + KL +R QA+A R G + Sbjct: 154 NGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLVS 198 >gi|302519506|ref|ZP_07271848.1| two component system response regulator [Streptomyces sp. SPB78] gi|302428401|gb|EFL00217.1| two component system response regulator [Streptomyces sp. SPB78] Length = 221 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA-----ARNLT 175 LG GY+ + + + A G +V L + R + +LT Sbjct: 103 LGAGARGYLTKNAGRQDIVRAIRAAAAGQSVLDREVQDRLLATVRARPTTSGQGLPADLT 162 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L G G + IAEKL +S TV ++ + K +R +A+ +A+ G Sbjct: 163 PREREVLTLIGQGLPNRAIAEKLFVSEATVKTHINNLFAKAGIRDRAEAVRRALTAGL 220 >gi|224583267|ref|YP_002637065.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467794|gb|ACN45624.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 238 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A+G + ++L E F + LTERE Sbjct: 123 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVNEYLRERERFGAQEDPFSILTEREL 182 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +RI A Sbjct: 183 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRIAA 227 >gi|134103142|ref|YP_001108803.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291003915|ref|ZP_06561888.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915765|emb|CAM05878.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 151 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 Y+ + + L + + + + + ++ S LTERE L+ G + Sbjct: 54 YLRWDASRPELVAAL-------AHTLASTSVPAPRQPSDPGVQLTERELQVLRGMSQGKS 106 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + +I +L LS TV + KL +R QA+A R G + Sbjct: 107 NGQIGRELYLSEDTVKTHARRLFRKLGVRDRAQAVAHGFRRGLVA 151 >gi|104780134|ref|YP_606632.1| LuxR family transcriptional regulator [Pseudomonas entomophila L48] gi|95109121|emb|CAK13818.1| putative transcriptional regulator, LuxR family [Pseudomonas entomophila L48] Length = 905 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 3/98 (3%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 LA + + A +++ E A L+ RE + L+L G ++++I+E+ Sbjct: 811 REQLAGQAVSPAQA---ELLARLPEAPANDLGATEALSGRELAVLELIAQGCSNQQISER 867 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L +S+HTV + KL R QA+A+A G + Sbjct: 868 LFISLHTVKTHASHINGKLGVERRTQAVARAKSLGLLA 905 >gi|260437679|ref|ZP_05791495.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM 2876] gi|292809905|gb|EFF69110.1| transcriptional regulatory protein DegU [Butyrivibrio crossotus DSM 2876] Length = 218 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 10/112 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--------KKRSSAARNLTERE 178 +G++ + +L V G Y I LE F +NLT+RE Sbjct: 98 GCDGFISKDCDVEILKRAVYSVYEGKKY--IQPELEKFLNINVTQEDDPEERIKNLTKRE 155 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L L GY +++I+ +L ++ TV ++ S K++ +R QA A++ Sbjct: 156 IEVLLLISKGYVNKDISNELKITERTVKNHVSSIFRKINVNDRTQAAVFAVK 207 >gi|253688783|ref|YP_003017973.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755361|gb|ACT13437.1| two component transcriptional regulator, LuxR family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 210 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 46/104 (44%), Gaps = 1/104 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII-EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 + +GY++ S L + + +A + + ++ S LTERE L Sbjct: 99 MDAGADGYLLKDSAPEHLLDAIRSSDAFSDQVRDVLRHRIAIQETPSPFTVLTERELDVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 159 QEVASGLSNKQIAAVLYISEETVKVHIRNMLRKLNVRSRVAATV 202 >gi|229820080|ref|YP_002881606.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229565993|gb|ACQ79844.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 201 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 50/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ T+ +LA+ V G Y D ++ LT RE L+ Sbjct: 94 LTVGVRGFLPKTASAAVLASVVRQVRDGGRY---VDPELAADAIAAGESPLTPREADVLE 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA +G EEIA + L+ TV YL SA KL A NR +A A G++ Sbjct: 151 LAAEGAPVEEIARRAALAPGTVRNYLSSAVAKLGASNRHEAARLARARGWL 201 >gi|196229624|ref|ZP_03128488.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196225950|gb|EDY20456.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 213 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 11/120 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------L 174 L GY++ + + + G Q+ + F+K+ L Sbjct: 95 LKAGACGYLLKRTPPQEIVTAIEEAKAGGSPMTPQIARHVVNFFQKQPVPPPAAPVEAGL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L L GY +EI E LG+S HTVN+++ KL +R QA+AK G I Sbjct: 155 AGREVEVLGLLAQGYLYKEIGESLGISTHTVNSHIRRIYEKLHVRSRSQAVAKYR--GLI 212 >gi|159900998|ref|YP_001547245.1| two component LuxR family transcriptional regulator [Herpetosiphon aurantiacus ATCC 23779] gi|159894037|gb|ABX07117.1| two component transcriptional regulator, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 213 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ L + A+G + + + S +LTERE S L Sbjct: 99 AGASGYLLKNVLKAELFLAIRTVANGQPFLHAEAQRTLMRQSTAPPSLLPSLTERERSVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G +++EIA L L+ TV Y+ + KL +R QA AI+ G+ Sbjct: 159 DGIVGGLSNKEIARSLHLTEGTVKGYVSTILTKLAVADRTQAALYAIKHGF 209 >gi|127514434|ref|YP_001095631.1| two component LuxR family transcriptional regulator [Shewanella loihica PV-4] gi|126639729|gb|ABO25372.1| two component transcriptional regulator, LuxR family [Shewanella loihica PV-4] Length = 198 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ + L + + G ++I L + L ++E L+LA Sbjct: 94 AGVGGFLLKDAPSETLIQAINAVSRGK--RIIDPELAIMAV--GEQDPLNDKERRALRLA 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +S EIA L ++ TV YL A KL+A NRI A A + G++ Sbjct: 150 SEGRSSAEIAASLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGWL 198 >gi|330807579|ref|YP_004352041.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375687|gb|AEA67037.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 911 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 42/97 (43%) Query: 138 FLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 L + + + ++ L+ RE + LQL G +++EI+E+ Sbjct: 814 REQLLQAPPSTLREHLLERLPSTVAQPADPAAPVETLSSRERAVLQLIAQGCSNQEISEQ 873 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +S+HTV + KL R QA+A+A G + Sbjct: 874 LFISLHTVKTHASHINSKLGVERRTQAVARAKALGLL 910 >gi|229168156|ref|ZP_04295884.1| Response regulator receiver [Bacillus cereus AH621] gi|228615400|gb|EEK72497.1| Response regulator receiver [Bacillus cereus AH621] Length = 596 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 12/120 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----------LT 175 +GY++ + + LA + + G + D + + LT Sbjct: 478 GADGYLLKSIDSRELAESIRLIYRGGT-MIDQDLFHKMWDGNDEEESVELKSDGKEYGLT 536 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +RE L L G + IA KL LS TV Y + KL+ NR +A+ KA G + Sbjct: 537 KRELEVLNLLSQGIRYKTIASKLYLSNGTVRNYASTLYDKLEVKNREEAVKKARDTGLLS 596 >gi|239979053|ref|ZP_04701577.1| two-component system response regulator [Streptomyces albus J1074] gi|291450931|ref|ZP_06590321.1| two-component system response regulator [Streptomyces albus J1074] gi|291353880|gb|EFE80782.1| two-component system response regulator [Streptomyces albus J1074] Length = 227 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/126 (25%), Positives = 48/126 (38%), Gaps = 15/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFL--------ELFKKRS 168 L +G++ SE L + + G +I FL E R Sbjct: 97 LRAGASGFLGKGSEPAELLGAIRVAHAGEALLSPAATKGLIASFLAQSGHGADERPGARE 156 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LT RE L G +++EIA +L +S TV ++ A KL A +R Q + A Sbjct: 157 ERLAALTGREREVLVHVAGGLSNDEIAGRLQVSPLTVKTHVNRAMAKLGARDRAQLVVTA 216 Query: 229 IRFGYI 234 G + Sbjct: 217 YETGLV 222 >gi|119025623|ref|YP_909468.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] gi|118765207|dbj|BAF39386.1| response regulator of two-component system [Bifidobacterium adolescentis ATCC 15703] Length = 249 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 50/137 (36%), Gaps = 28/137 (20%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR------------------ 167 +G+++ +E L N + G + L +K Sbjct: 113 AGASGFLLKDTEPETLLNSIRTVYQGNAIIAPSATKRLIEKMMDGDFAGTAAAAPVSATS 172 Query: 168 ----------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 LT+RE L G +++EIA+KL +S+ TV ++ K++ Sbjct: 173 ASASTATMYTDPELDELTDREREVLIEIAHGLSNQEIADKLFISLPTVKTHVAHILSKIN 232 Query: 218 AVNRIQAIAKAIRFGYI 234 A +R+QA+ A + Sbjct: 233 ARDRVQAVVFAYENHLV 249 >gi|260777662|ref|ZP_05886555.1| nitrate/nitrite response regulator protein [Vibrio coralliilyticus ATCC BAA-450] gi|260605675|gb|EEX31960.1| nitrate/nitrite response regulator protein [Vibrio coralliilyticus ATCC BAA-450] Length = 210 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ +E L + G A + + +L + S +LT+RE L+ Sbjct: 98 AGADGYLLKDTEPDELVELLKSSLQGNKAYSKEVAKYLAERENISDVFDDLTDREMQILR 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234 GY +++IA+ L +S TV ++ S KL +R A + R+G I Sbjct: 158 EVAKGYRNKQIADSLFISESTVKVHMKSLLKKLKVPSRTAATVLYLERYGEI 209 >gi|15893532|ref|NP_346881.1| response regulator [Clostridium acetobutylicum ATCC 824] gi|15023075|gb|AAK78221.1|AE007537_6 Response regulator (CheY-like recever domain and HTH DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325507651|gb|ADZ19287.1| Response regulator (CheY-like recever domain and HTH DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 208 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 7/110 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA------CYQVITDFLELFKKRSSAAR-NLTE 176 L GY++ + + + +G + I++F++ K + + NLTE Sbjct: 93 LKNGAEGYILKNQSSDSIIDSLKAVVNGNMVFEQNVAKTISNFIKEDKSNNGLEQYNLTE 152 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 RE L+ GDG +++EIA KL LS TV Y+ S KL+ +R Q Sbjct: 153 REMEVLRNIGDGLSNKEIASKLYLSEGTVRNYITSLLEKLELRDRTQLAI 202 >gi|87302655|ref|ZP_01085472.1| possible DNA-binding response regulator [Synechococcus sp. WH 5701] gi|87282999|gb|EAQ74956.1| possible DNA-binding response regulator [Synechococcus sp. WH 5701] Length = 237 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 33/102 (32%), Positives = 44/102 (43%), Gaps = 4/102 (3%) Query: 138 FLMLANEVIIEAHGACYQ--VITDFLEL--FKKRSSAARNLTERETSCLQLAGDGYTSEE 193 F L G Y + D L L R A L+ RE L+L GY + + Sbjct: 129 FGHLVAATRAVLGGGFYMEPQLRDLLALACRASRDPAGPGLSARELEVLELVVQGYQNPQ 188 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 IA ++ LSV TV ++L SA KL A R A A+ G + Sbjct: 189 IASRMHLSVETVRSHLKSAFQKLGATGRTHAAVMAVCQGLVS 230 >gi|284032715|ref|YP_003382646.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283812008|gb|ADB33847.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 217 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 49/120 (40%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDF--LELFKKRSSAARNL 174 L +G+++ + + + + A +++ + S + L Sbjct: 95 LRAGASGFLLKDASADEVLHAIRAVHAGDSVLAPSTTRRMLDHLPTARAGHEASPLLQRL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L G+++ E A++L LS TV ++ KL+ +R+QA+ A G + Sbjct: 155 TARERDVLLEIAHGHSNAETAQRLFLSEATVKTHVAHLLAKLEVRDRVQAVIFAYENGLV 214 >gi|32170705|dbj|BAC78370.1| putative two-component system response regulator [Streptomyces sp. WA46] Length = 222 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 15/127 (11%) Query: 122 VRLG--FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN--- 173 V +G+++ + L + A G + L+ F + + R Sbjct: 90 VHAAIRAGASGFLLKDARPEELLAGIRAVAVGDAVIAPALTRRLLDEFAQYVPSHRTEPS 149 Query: 174 -------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE L G G+T+ EIA + LS TV ++G K+ A +RIQA+ Sbjct: 150 EDPRLTALTDREREILVAIGKGWTNGEIAARFVLSESTVKTHVGRVLTKIGARDRIQAVI 209 Query: 227 KAIRFGY 233 A G Sbjct: 210 FAYDHGL 216 >gi|158315520|ref|YP_001508028.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158110925|gb|ABW13122.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 226 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLEL------FKKRSSA 170 L +G++ L + A G A +I FL + + Sbjct: 97 LHVGASGFLGKDVGTDELLTAIRTIAGGDALLSPAATRALIARFLATPEPTATARTNPAV 156 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE + L +GY++ +IA +L +S T ++ A KL+A +R Q + A + Sbjct: 157 LTTLTAREREVMVLVAEGYSNHDIARRLVISPLTARTHVHRAMTKLEARDRAQLVVIAYQ 216 Query: 231 FGYI 234 G + Sbjct: 217 SGLL 220 >gi|329768816|ref|ZP_08260247.1| hypothetical protein HMPREF0433_00011 [Gemella sanguinis M325] gi|328839589|gb|EGF89164.1| hypothetical protein HMPREF0433_00011 [Gemella sanguinis M325] Length = 199 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 4/108 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + YV+ L + G EL + + L+ +E L Sbjct: 96 NVDAYVLKDRSIDELMKTINNVLAGNKEY----SPELMENIFTNHNPLSNQEKILLAKVK 151 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++EI+ +L LS T+ Y+ + KL+ NR +A+ KA G+I Sbjct: 152 EGLSNKEISSELYLSEGTIRNYISNILTKLNCKNRTEAVKKATEEGWI 199 >gi|288916240|ref|ZP_06410620.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288352431|gb|EFC86628.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 189 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 16/126 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G+++ + L + + A G A ++I F A Sbjct: 62 LRAGASGFLLKDAPPEDLLTAIRVVAAGDALLSPAATRRLIDRFTATPPAEGDAPEPSPS 121 Query: 174 ------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE L G ++ EIA L L+ T+ ++ + K + +R Q + Sbjct: 122 RQLLSRLTDRERDVLTRVARGMSNAEIAADLVLATSTIKTHMTNLLAKTSSRDRTQLVIF 181 Query: 228 AIRFGY 233 A G Sbjct: 182 AYESGL 187 >gi|229818904|ref|YP_002880430.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229564817|gb|ACQ78668.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 218 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 8/114 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR-----NLT 175 L G+++ + +L + A G V L F ++ A LT Sbjct: 97 LRAGARGFLLKDAGPELLVRAIHAAAEGDALIAPNVTRRLLATFADQAPAVPVQPIDPLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 RE L L G T+ EIA +L + + TV ++ S KL A NR++ A Sbjct: 157 GREEEVLALVARGRTNAEIATELFVGLSTVKTHVASLMTKLGARNRVEIAMWAY 210 >gi|171743289|ref|ZP_02919096.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC 27678] gi|171278903|gb|EDT46564.1| hypothetical protein BIFDEN_02418 [Bifidobacterium dentium ATCC 27678] Length = 248 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 56/136 (41%), Gaps = 27/136 (19%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLE-----------LFKKR 167 +G+++ +E L N + A A ++I +E Sbjct: 113 AGASGFLLKDTEPETLLNSIRTVFQGNAIIAPSATKRLIERMMEGGLTDQDSLTIPASAD 172 Query: 168 SSAARN---------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 ++ +R LT+RE L G +++EIA++L +S+ TV ++ K++A Sbjct: 173 TAPSRPAYTDPELDELTDREREVLIEIAHGLSNQEIADRLFISLPTVKTHVAHILSKINA 232 Query: 219 VNRIQAIAKAIRFGYI 234 +R+QA+ A + Sbjct: 233 RDRVQAVVFAYENHLV 248 >gi|144898601|emb|CAM75465.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum gryphiswaldense MSR-1] Length = 217 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 10/116 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------LTER 177 G++ TS ++ + + + G Y + +E R LT R Sbjct: 98 GAAGFIPKTSSSRVMLSALKLVLSGGVY-LPPALIERSTPRGEGLSPAVVEQAMSILTPR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + L L G+G +++EIA L L+ TV ++ + L+ NR +A+ A + G Sbjct: 157 QREVLGLLGEGKSNKEIARILELAEGTVKLHVTAILKALNVNNRTRAVVAAAQMGL 212 >gi|256786173|ref|ZP_05524604.1| two component system response regulator [Streptomyces lividans TK24] gi|289770068|ref|ZP_06529446.1| two component system response regulator [Streptomyces lividans TK24] gi|289700267|gb|EFD67696.1| two component system response regulator [Streptomyces lividans TK24] Length = 226 Score = 92.7 bits (229), Expect = 4e-17, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR-------- 172 LG GY+ + + ++ G +V L + +++ A Sbjct: 103 LGAGARGYLTKNAGRQDITRAILAAGAGQSVLDREVQNRLLATARTKAAPAPGDAARQPL 162 Query: 173 --NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L G G ++ IAEKL +S TV ++ + K +R A+ +AI Sbjct: 163 PDDLTPREREVLALIGQGLSNRGIAEKLFISEATVKTHINNLFAKAHIRDRADAVRRAIG 222 Query: 231 FGY 233 G Sbjct: 223 AGL 225 >gi|327406023|ref|YP_004346861.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327321531|gb|AEA46023.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 205 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 4/108 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNL-TERET 179 L GY++ + + ++ G ++ L+ F K + L ++RE Sbjct: 94 LKAGATGYILKNTNPDKIIEAILELHEGGSPMSPKIARKVLQSFNKAENPVLQLISKRER 153 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L L GY +EIA+KL +++ TV +L KL N+ +A+ K Sbjct: 154 EVLDLLSKGYLYKEIADKLNITLSTVKRHLNHIYEKLQVQNKTEAVNK 201 >gi|318060483|ref|ZP_07979206.1| regulatory protein LuxR [Streptomyces sp. SA3_actG] gi|318076515|ref|ZP_07983847.1| regulatory protein LuxR [Streptomyces sp. SA3_actF] Length = 223 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLE--LFKKRSSAAR------ 172 L +G+++ S + L V A G V +E L +R + + Sbjct: 103 LAAGASGFLLKNSSYEELTGAVRAAAAGHSALSPAVTQRIIEGHLSGRRQPSDQELARLG 162 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LTERE L+L DG ++ EIAE+L +S+HTV ++ +K +R QA A Sbjct: 163 DLTEREVDVLRLIRDGLSNAEIAERLVVSLHTVKTHVSRVLMKTGCQSRAQAAVLAR 219 >gi|222106444|ref|YP_002547235.1| two component response regulator [Agrobacterium vitis S4] gi|221737623|gb|ACM38519.1| two component response regulator [Agrobacterium vitis S4] Length = 216 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAA---RNLTERET 179 +GY + L + G + ++ L + S A LT RE Sbjct: 98 AGASGYALKDVRRDTLLRMIRAVLDGQEFFDTGLVRRMLTRVSRTSPAEDAISQLTTRER 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ G T++EIA +L ++ TV ++ KL +R QA A + G + Sbjct: 158 EILQEVARGATNKEIARRLSIAPGTVKVHVERIIAKLRVGDRTQAAVLAAQAGLV 212 >gi|297196109|ref|ZP_06913507.1| two-component system regulatory protein [Streptomyces pristinaespiralis ATCC 25486] gi|197719414|gb|EDY63322.1| two-component system regulatory protein [Streptomyces pristinaespiralis ATCC 25486] Length = 222 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDF----LELFKKRSSAAR 172 L G+++ + V + A G ++I + L + Sbjct: 96 LRAGAAGFLVKDIVPEDFLHAVRVAARGDALLAPSITRKLIDRYVNQPLHTGSGNGTGLE 155 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G ++E+IA+++ +S T ++ A KL A +R Q + A G Sbjct: 156 ELTNREREAVALVAQGLSNEQIADRMVISPLTAKTHVNRAMAKLHARDRAQLVILAYESG 215 Query: 233 YIC 235 + Sbjct: 216 LVT 218 >gi|314987054|gb|EFT31146.1| response regulator receiver domain protein [Propionibacterium acnes HL005PA2] Length = 218 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G+++ + L + + A G A +++ + AA Sbjct: 97 LKAGASGFLLKDARPTELLSAIRNVADGDAVVAPSATRRLLDHVVPPLPNDPKAADKRLS 156 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G T+ EIA+ L ++ TV ++G KL+ +R+ + A G Sbjct: 157 VLTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVG 216 Query: 233 YI 234 + Sbjct: 217 LL 218 >gi|238061732|ref|ZP_04606441.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237883543|gb|EEP72371.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 221 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 9/116 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF------KKRSSAARNL 174 L G+++ + +L V A G V L+ F + + + Sbjct: 98 LRAGARGFLLKDAGPELLVQAVRSAADGQALIAPSVTVRLLQAFADVPVGRPMTQPVVPV 157 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T RE L G T+ EIA+ L +S+ TV +L S KL NR++ A Sbjct: 158 TAREEDVLIAVARGLTNVEIADALHISLSTVKTHLASLMGKLGVRNRVEIAMWAYE 213 >gi|223934493|ref|ZP_03626414.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223896956|gb|EEF63396.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 212 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 6/110 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN---LTER 177 L +GY++ SE + + G QV + F + +S + LT+R Sbjct: 100 LKSGASGYLLKRSEPEEVMEAITTAREGGAPMSSQVAHRVVHSFHEPASPTVDTAALTDR 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 E L L G+ ++EIA+K+ +SV TV +L KL +R +AI K Sbjct: 160 EKEILDLLTQGFANKEIADKMQISVTTVRTHLRHIYEKLHIRSRSEAIVK 209 >gi|24371949|ref|NP_715991.1| LuxR family DNA-binding response regulator [Shewanella oneidensis MR-1] gi|24345792|gb|AAN53436.1|AE015483_2 DNA-binding response regulator, LuxR family [Shewanella oneidensis MR-1] Length = 198 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ + L + + G +VI L + L ++E L+ A Sbjct: 94 AGVGGFLLKDAPSETLVSSIQQVMAGK--RVIDPELAMMAIGD--IDPLNDKERRALRFA 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ EIA+ L ++ TV YL A KL+A NRI A A + G++ Sbjct: 150 SEGKSTAEIADMLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGWL 198 >gi|294632463|ref|ZP_06711023.1| two-component system response regulator [Streptomyces sp. e14] gi|292835796|gb|EFF94145.1| two-component system response regulator [Streptomyces sp. e14] Length = 228 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 40/109 (36%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + S LT+RE L Sbjct: 119 AGATGYLLKAERPDELFTAIHSAAAGRTALSAPVAHRVMARMRSPRPTLTDRERDILGQL 178 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ +IA+ L LS TV +LG KL R A+A A + Sbjct: 179 SRGLTNRDIAKALFLSEATVKTHLGRIYDKLGVDTRAGAVAVAKEQRLL 227 >gi|113476331|ref|YP_722392.1| LuxR family transcriptional regulator [Trichodesmium erythraeum IMS101] gi|110167379|gb|ABG51919.1| transcriptional regulator, LuxR family [Trichodesmium erythraeum IMS101] Length = 87 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 44/73 (60%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + +S +L+ERE ++L DG T+E+IA +L +S TV+ ++ + K NR+ Sbjct: 1 MTRCKSKTHTSLSERELQVIELVADGLTNEKIASRLEISKRTVDNHISNILSKTSTHNRV 60 Query: 223 QAIAKAIRFGYIC 235 + + A+++G +C Sbjct: 61 ELVRWALQWGKVC 73 >gi|298245547|ref|ZP_06969353.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297553028|gb|EFH86893.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 201 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G+++ + LA + G +V+ L L S LT RE L Sbjct: 97 GVVGFLLKDAPASELAIALRRVMAGE--RVVDPDLALA-ALSEGMNPLTPREREVLAATL 153 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA +L LS TV +L +A KL+A NR++A A + G++ Sbjct: 154 PGISHAEIATRLALSEGTVRNHLSAAMQKLEARNRMEAARLAEQKGWL 201 >gi|167464268|ref|ZP_02329357.1| two component transcriptional regulator, LuxR family protein [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383996|ref|ZP_08057726.1| two-component response regulator YfiJ-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321151473|gb|EFX44660.1| two-component response regulator YfiJ-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 225 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 14/124 (11%) Query: 126 FHKNGYVIFTSEFLM-------LANEVIIEAHGACYQVITDFLELFK--KRSSAARNLTE 176 F GY++ + L ++ A ++++ F K ++ + LT Sbjct: 101 FGAQGYLLKNMDPDEWLLYLHALLDDNSEVARKMADRIMSQFRSPVKGTEQDPSPSVLTA 160 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI-----RF 231 RET + GY +++IA +L +S +TV ++ + KL+ NR+Q A A+ + Sbjct: 161 RETEIVAHVSKGYNNKQIALRLSISENTVKNHMKNILDKLNLENRVQLTAYAVKHQLTHY 220 Query: 232 GYIC 235 G+I Sbjct: 221 GHIS 224 >gi|295837594|ref|ZP_06824527.1| two-component system response regulator TcsR2 [Streptomyces sp. SPB74] gi|295826582|gb|EDY45254.2| two-component system response regulator TcsR2 [Streptomyces sp. SPB74] Length = 214 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I V + ++ L+ RE L+ Sbjct: 107 LEAGVRGFVPKTVSARRLA-EIIRTVQAGSRYVDPELAA--DAIAAGDSPLSAREAEVLE 163 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG EIA++ GLS TV YL SA KL A NR A+ A G++ Sbjct: 164 YAADGAPVAEIAQRAGLSPGTVRNYLSSAVTKLGAENRHAAVRAARSRGWV 214 >gi|261392488|emb|CAX50039.1| putative two-component system transcriptional regulator protein [Neisseria meningitidis 8013] gi|308389343|gb|ADO31663.1| putative two-component system response regulator narL [Neisseria meningitidis alpha710] gi|325128344|gb|EGC51228.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis N1568] Length = 218 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ L + A G ++ ++ + + A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 LEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|289208427|ref|YP_003460493.1| LuxR family transcriptional regulator [Thioalkalivibrio sp. K90mix] gi|288944058|gb|ADC71757.1| transcriptional regulator, LuxR family [Thioalkalivibrio sp. K90mix] Length = 232 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 14/135 (10%) Query: 108 LEGGLLPFAGIAFP-----VRLGFHK--NGYVIFTSEFLMLANEVIIEAHGA---CYQVI 157 +G FAG P +RL G T + +L ++ +G ++ Sbjct: 75 ADGAKTVFAGFNIPNEDEALRLLDVLYLQGIFYKTDQLDLLCKGILCLLNGDFWMSRHLM 134 Query: 158 TDFLELFKKRSS----AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 T + L++++ + A LT+RE L + G G T+ IA++L +S HTV ++L + Sbjct: 135 TRLVRLYRQQRTNTYRPACGLTQRELEILAMLGSGETNMNIAKQLFISEHTVKSHLYNIF 194 Query: 214 VKLDAVNRIQAIAKA 228 K++ NR QAI A Sbjct: 195 RKIEVKNRTQAINWA 209 >gi|269126984|ref|YP_003300354.1| LuxR family two component transcriptional regulator [Thermomonospora curvata DSM 43183] gi|268311942|gb|ACY98316.1| two component transcriptional regulator, LuxR family [Thermomonospora curvata DSM 43183] Length = 201 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 3/105 (2%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 G+++ + L + A G Y D S LTERE L++A G Sbjct: 100 GFIMKDAPPGELTEAIRTVAAGRRY---IDGQLALAAWDSGECPLTERELEVLRIAASGS 156 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EEIA L L+ TV YL SA KL+A NRI AI A ++ Sbjct: 157 GVEEIAATLFLTTGTVRNYLASAVSKLNARNRIDAIRIAHASDWL 201 >gi|226366304|ref|YP_002784087.1| LuxR family transcriptional regulator [Rhodococcus opacus B4] gi|226244794|dbj|BAH55142.1| putative LuxR family transcriptional regulator [Rhodococcus opacus B4] Length = 530 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 140 MLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLG 199 A ++A V+ + +R+ LT+RE L+L G +++EIA +L Sbjct: 427 EEARAGRLDAESVA-AVLAAAGQRQSRRTPWPAGLTDREVEILRLVAQGRSNKEIAAELF 485 Query: 200 LSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ T ++ KL NR QA AI G + Sbjct: 486 IAEKTARNHVERVYAKLGVNNRTQAGLAAIDRGLV 520 >gi|119714199|ref|YP_919341.1| response regulator receiver [Nocardioides sp. JS614] gi|119526108|gb|ABL79478.1| response regulator receiver [Nocardioides sp. JS614] Length = 215 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 49/120 (40%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDF--LELFKKRSSAARNL 174 L +G+V+ + L + G VI EL + ++ +L Sbjct: 96 LRAGAHGFVLKDAPPERLLEAIHEVGAGRGVIDPAVTLPVIRALGTRELRPEVAARLADL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L L G+++ EIA +L + TV ++ KL +R+QA+ A G + Sbjct: 156 TSRERDVLVLLAQGHSNAEIAARLVVGEGTVKTHVAHVLAKLGVRDRLQAVVSAFNAGVV 215 >gi|302546395|ref|ZP_07298737.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces hygroscopicus ATCC 53653] gi|302464013|gb|EFL27106.1| regulatory protein, LuxR:Response regulator receiver [Streptomyces himastatinicus ATCC 53653] Length = 223 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA----------RN 173 L +G+++ + L V + A L + ++AA Sbjct: 100 LRAGASGFLLKRARADDLVQAVRLVARSDSLLFPAAVRALAAEHAAAAGGRDAARALRDR 159 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+L G ++ EIA +L + TV ++ + KL +R QA+ A G+ Sbjct: 160 LSEREADVLRLMAAGLSNAEIAARLTVGPATVKTHVAAVLGKLGVRDRTQAVIAAYECGF 219 Query: 234 IC 235 + Sbjct: 220 VT 221 >gi|224368539|ref|YP_002602702.1| two component transcriptional regulator (LuxR family protein) [Desulfobacterium autotrophicum HRM2] gi|223691255|gb|ACN14538.1| two component transcriptional regulator (LuxR family protein) [Desulfobacterium autotrophicum HRM2] Length = 217 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 8/117 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSS-AARNLTE 176 NGY++ + + G + + ++ K SS L+ Sbjct: 97 SAGANGYLLKEDTDTEILTAMDTILEGKAFLSSIFTKDMPDILTDMVKNGSSFPGGTLSP 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L +G ++++IA+ L +S TV + S +LD I AIR GY Sbjct: 157 REEEVLTLLAEGKSNKKIADILCISTRTVEHHRASIMKRLDLRTLADLIKYAIRHGY 213 >gi|113460191|ref|YP_718248.1| nitrate/nitrite response regulator protein [Haemophilus somnus 129PT] gi|170718227|ref|YP_001785249.1| LuxR family transcriptional regulator [Haemophilus somnus 2336] gi|112822234|gb|ABI24323.1| nitrate/nitrite response regulator protein [Haemophilus somnus 129PT] gi|168826356|gb|ACA31727.1| two component transcriptional regulator, LuxR family [Haemophilus somnus 2336] Length = 209 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L +++ G + I + L + + +LT+RE + L Sbjct: 98 DAGADGYLLKDTEPDTLLSQIKRVTQGEVILSESIKNLLLERQHKDDPIYSLTDREMNVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L G +++IA +L +S TV ++ + KL+ +R+ A Sbjct: 158 ALIATGLANKQIAGQLFISEETVKVHIRNLLRKLNVHSRVAATV 201 >gi|167577459|ref|ZP_02370333.1| DNA-binding response regulator [Burkholderia thailandensis TXDOH] Length = 214 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 10/144 (6%) Query: 97 VIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156 ++ + L + L A A +R F +GY++ + + G + Sbjct: 66 ILRAHPGLRFIVFTALGSEARAADAIR--FGASGYLLKWCSPDGIVQAIRRVMAGRV-HI 122 Query: 157 ITDFLELF-------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 E + +S LT RE L+L DG + EIA L +S TV+ + Sbjct: 123 DPSLDEARVASAAGGRALASPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCHR 182 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 KL A N I A R+GY Sbjct: 183 QRLMQKLGARNVANVIHWAYRYGY 206 >gi|320333040|ref|YP_004169751.1| two component LuxR family transcriptional regulator [Deinococcus maricopensis DSM 21211] gi|319754329|gb|ADV66086.1| two component transcriptional regulator, LuxR family [Deinococcus maricopensis DSM 21211] Length = 220 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR--------NLT 175 L +GY+ + L + + G + + + LT Sbjct: 102 LQAGASGYLFKNVDIHELHDAMRRVRAGE-RVIHPRVAQAVADAEAVDAAPGVTLQAPLT 160 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE + L G ++++IA++LG+S TV +L + KL A NR +A+ +A + + Sbjct: 161 AREQAILGALSAGASNKQIAQRLGISDGTVKTHLSNLFFKLGAANRTEAVYRARQLRLL 219 >gi|307327922|ref|ZP_07607104.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886440|gb|EFN17444.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 226 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 13/122 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLE------LFKKRSSA 170 L +G+++ SE L V A ++I +F L +A Sbjct: 103 LRAGASGFLLKDSEAADLIEAVRTVGRGEGMIATAVTRRLIAEFARPQTAPSLNTPSPAA 162 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L G G ++ +IA +L ++ TV ++ KL+ +R+QA A Sbjct: 163 LASLTPREREVLACLGQGLSNAQIAARLSMAEATVKTHVSRLLSKLELRSRVQAAVLAQE 222 Query: 231 FG 232 G Sbjct: 223 LG 224 >gi|229056740|ref|ZP_04196143.1| Sensory transduction protein ydfI [Bacillus cereus AH603] gi|228720587|gb|EEL72150.1| Sensory transduction protein ydfI [Bacillus cereus AH603] Length = 207 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 7/115 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR----NLTERET 179 GY++ ++ L + G ++ ++ +K A + NLTE+E Sbjct: 91 GAKGYLLKDTDRENLFRTLEAAIRGEILLQPDIMEKIVKYKRKEVHADKVEGNNLTEKEL 150 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ GY ++EIA +G++ TV AYL + KL +R +A+A +I I Sbjct: 151 FVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 205 >gi|116073216|ref|ZP_01470478.1| transcriptional regulator, LuxR family protein [Synechococcus sp. RS9916] gi|116068521|gb|EAU74273.1| transcriptional regulator, LuxR family protein [Synechococcus sp. RS9916] Length = 227 Score = 92.3 bits (228), Expect = 4e-17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 38/62 (61%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT+RE L++ G +++EI+E L +S TV +++ + K+ +R QA+ KAIR Sbjct: 166 PDLTDREMEVLKVLSSGMSNKEISESLCISSETVKSHVSTIIGKMGVKDRTQAVIKAIRA 225 Query: 232 GY 233 G Sbjct: 226 GI 227 >gi|332702953|ref|ZP_08423041.1| two component transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] gi|332553102|gb|EGJ50146.1| two component transcriptional regulator, LuxR family [Desulfovibrio africanus str. Walvis Bay] Length = 225 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 49/120 (40%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRS----SAARNL 174 GY++ S L + +V+ LE +R+ SA +L Sbjct: 99 AGAEGYLVKESTAERLLQALDAVTREQQYLDSAISPKVVQKLLEFSTRRAQMTDSAYGSL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE ++L DG+TS IA KL ++ TV + + KL N + A R G I Sbjct: 159 TQREQQIMRLLADGWTSSAIAGKLFITRKTVENHRANIMSKLGLKNLADLVRYAARLGLI 218 >gi|323154780|gb|EFZ40977.1| bacterial regulatory s, luxR family protein [Escherichia coli EPECa14] Length = 123 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT E+ Sbjct: 10 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNSESEI 68 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS TV + + KLD + I+ I A+R G Sbjct: 69 LQLIADGKTNKEIANFLQLSRKTVETHRLNIMKKLDVHSGIELIKTALRMG 119 >gi|307545446|ref|YP_003897925.1| DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Halomonas elongata DSM 2581] gi|307217470|emb|CBV42740.1| DNA-binding response regulator in two-component regulatory system with NarX (or NarQ) [Halomonas elongata DSM 2581] Length = 219 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 56/118 (47%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC------YQVITDFLELFKKRSSAA--RNLT 175 L +GY++ + + +++ A G ++ + L K +S+A +LT Sbjct: 100 LHAGADGYLLKDMDPDDMVHQLRQAALGRMVISDSLASLLAEALRNQKGQSTAPDIHSLT 159 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +RE L+ G +++ IA +L ++ TV ++ KL+ +R++A A++ G Sbjct: 160 QREREILRELAAGLSNKLIARRLDITEGTVKVHVKHLLKKLNLRSRVEAAVWAVQEGI 217 >gi|317054417|ref|YP_004118442.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pantoea sp. At-9b] gi|316952412|gb|ADU71886.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pantoea sp. At-9b] Length = 241 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 61/175 (34%), Gaps = 16/175 (9%) Query: 74 DDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI 133 D + + + + PIIW + ++ ++ +G F + + + Sbjct: 65 DPVIINALNRVSPIIWDENLMINSQWTINKIFNAVKPFYNIVSGQTFVLHDYNNNLVLLS 124 Query: 134 -------------FTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 ++ ++I+ H + D E K S L+ RE Sbjct: 125 LYINKYLMVDVNEKATKDRHDLQGLLIDTHEMMLHLYRDESERHK---SEENMLSSRENE 181 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L + G T EIA L ++V TV ++G K+ N AI+ AI I Sbjct: 182 ILYWSSTGKTYPEIAHMLNITVSTVKFHMGKIVKKMGVNNAKHAISLAIELNIIS 236 >gi|13473938|ref|NP_105506.1| two-component system response regulator [Mesorhizobium loti MAFF303099] gi|14024689|dbj|BAB51292.1| two-component system response regulator [Mesorhizobium loti MAFF303099] Length = 215 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 9/118 (7%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARNLT 175 L GY++ + L V G Y V+ DFL+ + +RNLT Sbjct: 97 TLRAGARGYLLKIEDDSELVAAVAALIRGQTYFSPRVSECVLQDFLD--GQSDVTSRNLT 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE ++ +G +++ IA +LG+SV TV+++ +A KL N + + AIR Sbjct: 155 NREREVVRFVSEGESNKRIAARLGVSVKTVDSHRTTAMRKLGLRNAVDLVRYAIRNKL 212 >gi|120555999|ref|YP_960350.1| two component LuxR family transcriptional regulator [Marinobacter aquaeolei VT8] gi|120325848|gb|ABM20163.1| two component transcriptional regulator, LuxR family [Marinobacter aquaeolei VT8] Length = 219 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 52/119 (43%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAAR---NL 174 L +GY++ E + ++ A G ++ + L K + ++ +L Sbjct: 98 LRAGADGYLLKDMEPEDMIAQLHQAAVGKMVISDRLTTLLAEALRSNKPQQTSRPDFDSL 157 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L+L +G +++ I KL +S TV ++ KL+ +R++ A+ G Sbjct: 158 TPREKDILRLIAEGLSNKMIGRKLDISDGTVKVHVKHLLKKLNLRSRVEVAVWAVEEGL 216 >gi|239833383|ref|ZP_04681711.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gi|239821446|gb|EEQ93015.1| two component LuxR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 233 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 49/109 (44%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + Y+ +F +L + + + + +L+ RET L+ Sbjct: 122 AGADDYLTKPIDFDVLILTIRARLNLVARVKAISNQPAAAEPNGEFIHLSRRETEVLKEI 181 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G G + EIA KLGLS HTV+ Y+ + KL +R +A +AIR G + Sbjct: 182 GTGQRNGEIARKLGLSEHTVSDYVKAIYQKLSVSSRAEATREAIRRGLV 230 >gi|284028795|ref|YP_003378726.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808088|gb|ADB29927.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 200 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V ++E +A VI HG + E+ + LT+RE L+ Sbjct: 94 LKLGIQGFVSKSAEPAHIA-SVIGLLHGGKRWIDP---EVSARAVIDDNPLTDRELDALR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +GY+ +IA +L L+ TV YL +A K A +R +A A ++ Sbjct: 150 LTSEGYSVADIATRLFLAEGTVRNYLSNAMRKTQAKSRHEAARYAREHDWL 200 >gi|167840151|ref|ZP_02466835.1| DNA-binding response regulator [Burkholderia thailandensis MSMB43] Length = 214 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 53/145 (36%), Gaps = 8/145 (5%) Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACY 154 ++ + + + L A A +RLG +GY++ + V G + Sbjct: 64 SEILRAHPDVRFVVFTALGSEARAADAIRLGA--SGYLLKWCSPDGIVQAVRRVMAGRVH 121 Query: 155 Q------VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 + S LT RE L+L DG + EIA L +S TV+ + Sbjct: 122 IDPSLDGARIASAAGGRTPPSPVDELTRREKQVLKLIADGMRNREIASLLNISPKTVDCH 181 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGY 233 KL A N I A R+GY Sbjct: 182 RQRLMQKLGARNVANVIHWAYRYGY 206 >gi|307325986|ref|ZP_07605185.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306888478|gb|EFN19465.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 230 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEA-------HGACYQVITDFLELFKKRSSAARNL--TER 177 +G+++ +E L V G ++I +F ++ + AA TER Sbjct: 108 GASGFLVKDTEPEELLRAVRAVVGGDALLSPGVTRRLIAEFAARSREPAPAAALAELTER 167 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L G G +++EIA +L +S T ++ VKL +R Q + A G + Sbjct: 168 EREVMALVGMGLSNQEIARRLVVSPLTAKTHVSRTMVKLGVRDRAQLVVLAYESGLV 224 >gi|239989357|ref|ZP_04710021.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291446370|ref|ZP_06585760.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291349317|gb|EFE76221.1| two component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 229 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN-----LT 175 L +G+++ + L N V G Y +V + + +A + LT Sbjct: 105 LEEGADGFLLKADDPRELLNGVRAVGAGGAYLSPRVAGRVIAGMRAHRAAHPHRPLERLT 164 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L G G ++ EIA +L L TV A++ + KL NR++A A G + Sbjct: 165 GREREVLAGIGTGLSNAEIAGRLHLVEGTVKAHVSAVLAKLGVRNRVEAAIAAHEAGLLA 224 >gi|254382674|ref|ZP_04998032.1| two component system response regulator [Streptomyces sp. Mg1] gi|194341577|gb|EDX22543.1| two component system response regulator [Streptomyces sp. Mg1] Length = 233 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L +G++ +E L N + + A G +I FL + AA Sbjct: 102 LRAGASGFLGKGAEPEELLNAIRVAAAGEALLSPAATKGLIATFLAQGGREERAAATGAH 161 Query: 174 ------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L G +++ IA +L +S TV ++ A KL A +R Q + Sbjct: 162 AQQLAALTVREREVLVHVAAGLSNDGIAGRLEVSPLTVKTHVNRAMAKLGARDRAQLVVI 221 Query: 228 AIRFGYI 234 A G + Sbjct: 222 AYESGLV 228 >gi|194292820|ref|YP_002008727.1| response regulator in two-component regulatory system with narx, regulates anaerobic respiration and fermentation (luxr/uhpa familiy) [Cupriavidus taiwanensis LMG 19424] gi|193226724|emb|CAQ72675.1| response regulator in two-component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) [Cupriavidus taiwanensis LMG 19424] Length = 217 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 47/117 (40%), Gaps = 10/117 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKK-------RSSAARNLTE 176 GY+I E L + A G + + F+ R A LT Sbjct: 98 GARGYLIKNIETEALIAGIRRAAAGEPVISDSMTAKLVAQFRAPVPAVALRQDDAPRLTA 157 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE +Q G +++EIA LG++ TV ++ + KL+ +R+Q A+ G Sbjct: 158 REREIVQGLARGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVEHGL 214 >gi|157691669|ref|YP_001486131.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|194014892|ref|ZP_03053509.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] gi|157680427|gb|ABV61571.1| transcriptional regulator [Bacillus pumilus SAFR-032] gi|194013918|gb|EDW23483.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Bacillus pumilus ATCC 7061] Length = 216 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 7/111 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARNLTERE 178 Y + L +I G ++ E +++ + LT RE Sbjct: 95 AGAKAYQLKDVAPEKLLTTMIDVQKGTYQLDGHITNFLVQHLTEPKEQKWELMKELTNRE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L G +++EIA L +S TV ++ KL+ +R QA A+ Sbjct: 155 RDVLFEIAKGKSNKEIASSLFISEKTVKTHVSHVLSKLELADRTQAALYAV 205 >gi|288918024|ref|ZP_06412382.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288350542|gb|EFC84761.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 282 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 1/96 (1%) Query: 140 MLANEVIIEAHGACYQVITD-FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 +++ + E A ++ D F + + L+ RE L+L +G ++ E A +L Sbjct: 186 QTSDQALRERIIAVRDLLEDLFPDTAPPTRAQPFGLSPRELDVLRLVAEGMSNAETARRL 245 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +S TV AYL S KL NR A+ A R + Sbjct: 246 AVSPETVKAYLRSIMNKLGVHNRTAAVNVARRSSLL 281 >gi|290962896|ref|YP_003494078.1| two-component regulator [Streptomyces scabiei 87.22] gi|260652422|emb|CBG75555.1| putative two-component regulator [Streptomyces scabiei 87.22] Length = 222 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 14/125 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLE-------LFKKRSS 169 L +G+++ + L + A G +++ + Sbjct: 94 LRAGASGFLLKDARPEELVAGIHAVATGDAVVAPSLTRRLLDAYAHQVLAPSGTAPAADP 153 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +L+ERE L G G+T+ EIAE+L L+ TV ++G K+ A +RIQA+ A Sbjct: 154 RLESLSEREHEVLVAIGQGWTNAEIAERLVLTESTVKKHVGRVLAKIGARDRIQAVITAY 213 Query: 230 RFGYI 234 G + Sbjct: 214 DAGLV 218 >gi|182439137|ref|YP_001826856.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] gi|178467653|dbj|BAG22173.1| putative two-component system response regulator [Streptomyces griseus subsp. griseus NBRC 13350] Length = 244 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--- 173 L +G++ +E L N + I A G +I FL + Sbjct: 113 LRAGASGFLGKGAEPDELLNAIRIAAAGEALLSPAATKGLIATFLAQGGSSGEGPDSAEY 172 Query: 174 ------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L G++++ IAE+L +S TV ++ A KL A +R Q + Sbjct: 173 AERLAALTGREREVLVQVAGGHSNDRIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVI 232 Query: 228 AIRFGYI 234 A G + Sbjct: 233 AYESGLV 239 >gi|116625456|ref|YP_827612.1| LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116228618|gb|ABJ87327.1| transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 178 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 1/112 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCL 182 L + + + + A G D L A A LT RE L Sbjct: 65 LRVGVRAILAADAPGAEILAAIEAAAAGLAAIDPRDLEALLPASPQAVAGPLTPRELEVL 124 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ +G ++ IA KLG+S HTV ++ KL+A R +A+ IR G I Sbjct: 125 RMLAEGAANKNIAWKLGISEHTVKFHVAQILGKLNAGTRTEAVTLGIRKGLI 176 >gi|186681434|ref|YP_001864630.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186463886|gb|ACC79687.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 239 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 44/80 (55%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 +V+ + ++ ++S + LT RE L+L G + EIA++L L+V TV ++ Sbjct: 159 RVLIEGIDPDVEKSIVSYPLTHREMDVLELIVAGCDNAEIAKRLYLTVGTVKTHVRGILN 218 Query: 215 KLDAVNRIQAIAKAIRFGYI 234 KL +R QA +A+R G + Sbjct: 219 KLCVADRTQAAVRALRAGLV 238 >gi|326440343|ref|ZP_08215077.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 225 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA-----ARNLT 175 L G+++ L V + A + R +A AR LT Sbjct: 104 LRAGAAGFLLKRVAADELIQAVRLMARSDSLLFPAAVRSLAAEHGARRTAPVPPWARKLT 163 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 ERE L+L G T+ EIAE++G+ TV +++ + K A +R QA+ A G+I Sbjct: 164 EREADTLRLMAAGLTNGEIAERMGVGPATVKSHVAAVLAKTGARHRTQAVILAYESGFIT 223 >gi|288921805|ref|ZP_06416022.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288346829|gb|EFC81141.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 694 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+V+ + LA + A G + + D + A LT RE L A Sbjct: 589 AGALGFVVKDAPAEALAEAIRRVARG---ERVVDPTLAAATLAGGASPLTGRERDVLVAA 645 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T +IA +L LS TV YL + K NR++A+ A G++ Sbjct: 646 RDGATVADIARRLFLSEGTVRNYLSAVIAKTGTRNRMEALRVAEDSGWL 694 >gi|229592530|ref|YP_002874649.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229364396|emb|CAY52185.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 830 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + I E ++++ + + A L++RE LQL G ++ EIA++L + Sbjct: 736 QQAIRELRLRSPGLLSELGMEPQASTPGAVDNPLSQRELEVLQLIALGNSNLEIADRLFI 795 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 S+HTV + KL R QA+AKA G + Sbjct: 796 SLHTVKTHARRIHSKLGVERRTQAVAKAKALGLMT 830 >gi|83716526|ref|YP_439048.1| DNA-binding response regulator [Burkholderia thailandensis E264] gi|83650351|gb|ABC34415.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 223 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 8/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KKRSSAARNLTERE 178 F +GY++ + + G + E + +S LT RE Sbjct: 102 FGASGYLLKWCSPDGIVQAIRRVMAGRV-HIDPSLDEARVASAAGGRALASPVDELTRRE 160 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L DG + EIA L +S TV+ + KL A N I A R+GY Sbjct: 161 KQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 215 >gi|78356024|ref|YP_387473.1| two component LuxR family transcriptional regulator [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218429|gb|ABB37778.1| two component transcriptional regulator, LuxR family [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 223 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 49/120 (40%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFL--ELFKKRSSAARNL 174 L +GYV+ + V G Y V+ +L + SS+ L Sbjct: 97 LAAGADGYVLKDASNDEFILAVESVLGGKIYLSPGVSDAVVKGYLNDARGQSVSSSWETL 156 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE QL +GY + EIAE L +SV TV + + KL + + A A+ G I Sbjct: 157 TPREQEIFQLVAEGYKNREIAEMLVVSVKTVEKHRSNLMQKLGVHSAAELRALALERGII 216 >gi|294677045|ref|YP_003577660.1| LuxR family two component transcriptional regulator [Rhodobacter capsulatus SB 1003] gi|294475865|gb|ADE85253.1| two component transcriptional regulator, LuxR family [Rhodobacter capsulatus SB 1003] Length = 206 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 3/110 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V + V + A G V F L ++ LT RET L+ Sbjct: 99 LEAGAIGFVPKAMPARSIIGAVTLMASG---SVFAPFDFLKQEEPPVQGGLTARETEVLR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G T++EIA ++ L TV ++ + T K+ A NR A A G+ Sbjct: 156 GICAGRTNKEIAREMDLQEVTVKLHVRTLTRKIGARNRTHAAMIARENGW 205 >gi|118616214|ref|YP_904546.1| nitrate/nitrite response regulator protein NarL [Mycobacterium ulcerans Agy99] gi|118568324|gb|ABL03075.1| nitrate/nitrite response regulator protein NarL [Mycobacterium ulcerans Agy99] Length = 216 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERET 179 L G+++ S + V+ A G ++ E+ ++ + A L+ RE Sbjct: 101 LQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPMAPVLSARER 160 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G + IA +L ++ TV ++ KL +R A+A+A+R G + Sbjct: 161 EVLHRIAKGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 215 >gi|113971949|ref|YP_735742.1| two component LuxR family transcriptional regulator [Shewanella sp. MR-4] gi|117922250|ref|YP_871442.1| two component LuxR family transcriptional regulator [Shewanella sp. ANA-3] gi|113886633|gb|ABI40685.1| two component transcriptional regulator, LuxR family [Shewanella sp. MR-4] gi|117614582|gb|ABK50036.1| two component transcriptional regulator, LuxR family [Shewanella sp. ANA-3] Length = 198 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ + L + + G ++I L + L ++E L+ A Sbjct: 94 AGVGGFLLKDAPSETLVHAIQQVIAGK--RIIDPELAIMAIGD--VDPLNDKERRALRFA 149 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++ EIAE L ++ TV YL A KL+A NRI A A + G++ Sbjct: 150 SEGKSTAEIAEMLFIAEGTVRNYLSEAIAKLNASNRIDAARIAKQKGWL 198 >gi|325130303|gb|EGC53070.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis OX99.30304] gi|325136264|gb|EGC58872.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M0579] Length = 218 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ L + A G ++ ++ + + A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQSTQGTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 LEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|317484063|ref|ZP_07942996.1| luxR family Bacterial regulatory protein [Bilophila wadsworthia 3_1_6] gi|316924707|gb|EFV45860.1| luxR family Bacterial regulatory protein [Bilophila wadsworthia 3_1_6] Length = 282 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L +GY++ T++ + G Y +I +++ + SS A +LT Sbjct: 160 LKAGADGYLLKTADEDEFLVAIRALLKGRKYISTELTGSMIISYVDGNAEASSKADSLTP 219 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +E L+L +G ++++IA KL LSV T++ + S KLD N + A++ G + Sbjct: 220 KEKMVLKLIAEGNSNKDIAAKLNLSVKTIDTHRTSFMKKLDLHNVREVTRFAMQNGLV 277 >gi|283457818|ref|YP_003362412.1| response regulator [Rothia mucilaginosa DY-18] gi|283133827|dbj|BAI64592.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Rothia mucilaginosa DY-18] Length = 275 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 5/95 (5%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 L I A A ++ + D+ L+ RE L L G ++ EI +L Sbjct: 184 SELPKATFIPAEHASFEPVQDYPHR-----ELIEQLSPREFEVLGLIARGLSNAEITREL 238 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LS TV ++ KL A +R+QA+ A G Sbjct: 239 VLSEATVKTHVSHVLAKLGARDRVQAVIMAYEAGI 273 >gi|256785730|ref|ZP_05524161.1| two-component system DNA-binding response regulator [Streptomyces lividans TK24] gi|289769622|ref|ZP_06529000.1| two-component system DNA-binding response regulator [Streptomyces lividans TK24] gi|289699821|gb|EFD67250.1| two-component system DNA-binding response regulator [Streptomyces lividans TK24] Length = 251 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L N V G ++ L+ F + LT+RE Sbjct: 136 GARGYVTKTITGTDLVNSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 195 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 196 REVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 251 >gi|183984750|ref|YP_001853041.1| nitrate/nitrite response regulator protein NarL [Mycobacterium marinum M] gi|183178076|gb|ACC43186.1| nitrate/nitrite response regulator protein NarL [Mycobacterium marinum M] Length = 216 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERET 179 L G+++ S + V+ A G ++ E+ ++ + A L+ RE Sbjct: 101 LQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVVAPSLVGGLAGEIRQRAAPMAPVLSARER 160 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G + IA +L ++ TV ++ KL +R A+A+A+R G + Sbjct: 161 EVLHRIAKGQSIPAIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 215 >gi|83593270|ref|YP_427022.1| LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83576184|gb|ABC22735.1| transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 254 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 37/190 (19%), Positives = 67/190 (35%), Gaps = 19/190 (10%) Query: 64 IPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFA 116 ++ Y D + P+ W + + + Sbjct: 37 FDQAFLDRYSQAGHLSHDTAVQWVFRFSQPVPWVTPRRLAELSERQIRVWEEGEAFGVRN 96 Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANE---------VIIEAHGACYQVITDFLELFKKR 167 G++ PVR G + +F S + ++ + A + + LF R Sbjct: 97 GLSVPVRFGRDGSAGGLFFSATGLGDDDWRGILTDKGATLVALAYTFHEAMERFPLFSTR 156 Query: 168 ---SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 +LT RE L + G E+A++LG++ T +LG+A KL A QA Sbjct: 157 VNPQDHVIHLTNRERESLIWSARGCQVGEVADRLGVADRTAEHHLGAARRKLMARTTAQA 216 Query: 225 IAKAIRFGYI 234 +A+A+ G + Sbjct: 217 VARALAMGLL 226 >gi|78045671|ref|YP_361846.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034101|emb|CAJ21746.1| two-component system regulatory protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 210 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLEL---FKKRSSAARNLTERETS 180 G+++ + L + A G V TD + F+ + + ERE + Sbjct: 97 AGAQGFLLKDAAPEDLREAIERVAAGDTLLQPVSTDPVRARYQFRDQQAPRETFNEREVA 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY+++EIA L L+ TV Y+ + KL +R +A+ KAI I Sbjct: 157 ILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210 >gi|319410499|emb|CBY90860.1| putative two-component system transcriptional regulator protein [Neisseria meningitidis WUE 2594] Length = 218 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ L + A G ++ ++ + + A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 LEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|255326927|ref|ZP_05368003.1| two component transcriptional regulator, LuxR family [Rothia mucilaginosa ATCC 25296] gi|255296144|gb|EET75485.1| two component transcriptional regulator, LuxR family [Rothia mucilaginosa ATCC 25296] Length = 210 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G+V+ + LA + H V + A LTERE L+ Sbjct: 103 LEAGASGFVVKDTGARQLAEAIRRV-HAGLRVVDPSLAA--DSLVTGASPLTEREAQVLR 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G T+++IA L LS TV YL +A K A R A+ A G++ Sbjct: 160 EAASGGTAQQIASALFLSAGTVRNYLSAAMAKTGASTRQDAVRIATENGWL 210 >gi|187478442|ref|YP_786466.1| two-component response regulator [Bordetella avium 197N] gi|115423028|emb|CAJ49559.1| putative two-component response regulator [Bordetella avium 197N] Length = 225 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L GYV+ + L ++ + G +++ +F ++ L+ Sbjct: 107 LRAGACGYVLKERDDLEVSIAIRSVLSGGAPIDPFLARRLLHEFRTPLVGQADNTGPLSP 166 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G + EIAE+L LS +TV ++ KL +R QAI A G + Sbjct: 167 REAQILRLVASGLGNREIAEQLHLSRYTVERHVKHVYRKLLVSSRTQAIHAARVRGLL 224 >gi|325204234|gb|ADY99687.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M01-240355] Length = 218 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ L + A G ++ ++ + + A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 LEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|325202056|gb|ADY97510.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M01-240149] gi|325208190|gb|ADZ03642.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis NZ-05/33] Length = 218 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ L + A G ++ ++ + + A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 LEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|283782494|ref|YP_003373249.1| two component LuxR family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283440947|gb|ADB19389.1| two component transcriptional regulator, LuxR family [Pirellula staleyi DSM 6068] Length = 210 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 6/116 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQ------VITDFLELFKKRSSAARNLTERE 178 G+++ S + + + G + + + + + LT RE Sbjct: 95 ALGAAGFLMKGSTKADVLSAITRAHTGLPPENESLMGRVRNTMARRRPTYDEEIPLTNRE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G ++ EI L +S+ TV ++ + KL+A +R +A A++ G + Sbjct: 155 VQVLRHVALGLSNREIGRSLDISIETVKEHVQNILRKLEAGDRTEAAVWAVKKGLV 210 >gi|260886222|ref|ZP_05897485.1| DNA-binding response regulator DegU [Selenomonas sputigena ATCC 35185] gi|330839784|ref|YP_004414364.1| two component transcriptional regulator, LuxR family [Selenomonas sputigena ATCC 35185] gi|260863941|gb|EEX78441.1| DNA-binding response regulator DegU [Selenomonas sputigena ATCC 35185] gi|329747548|gb|AEC00905.1| two component transcriptional regulator, LuxR family [Selenomonas sputigena ATCC 35185] Length = 223 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 48/119 (40%), Gaps = 15/119 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK---------------RS 168 L GY++ E ML + + G + + LF R Sbjct: 95 LKNGVLGYLLKDVEPSMLIKAIHVVNEGNAFVYPSLAERLFGGVSEDENINEKARTMWRE 154 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 S + LT RE L G+++++IA+ L +S TV +L + KL+ +R QA+ Sbjct: 155 SRSERLTSREMDVLSCIAKGFSNQDIAQALFVSEKTVKNHLTNIFRKLNVNDRTQALIY 213 >gi|284991375|ref|YP_003409929.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064620|gb|ADB75558.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 219 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--------QVITDFLELFKKRSSAARNLT 175 L +GYV+ + L + G + + + R LT Sbjct: 99 LKAGASGYVLKSVADQDLVSACRGAVRGEPFIYPDALTTLMREHLHRAGRGEPVPERVLT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++L +G +S EIA L +S TV + + KLD +R Q AIR G + Sbjct: 159 AREAEVVKLIAEGCSSREIAALLVISTKTVERHRANILQKLDMRDRTQLTRYAIRTGLL 217 >gi|161870093|ref|YP_001599263.1| two-component system, NarL family nitrate/nitrite response regulator [Neisseria meningitidis 053442] gi|161595646|gb|ABX73306.1| two-component system, NarL family, nitrate/nitrite response regulator NarL [Neisseria meningitidis 053442] gi|254673916|emb|CBA09700.1| putative two-component system response regulator [Neisseria meningitidis alpha275] Length = 218 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ L + A G ++ ++ + + A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 LEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|32141276|ref|NP_733677.1| response regulator [Streptomyces coelicolor A3(2)] gi|256784694|ref|ZP_05523125.1| response regulator [Streptomyces lividans TK24] gi|289768580|ref|ZP_06527958.1| response regulator [Streptomyces lividans TK24] gi|1542943|emb|CAA69209.1| redZ [Streptomyces coelicolor A3(2)] gi|24429546|emb|CAD55237.1| response regulator [Streptomyces coelicolor A3(2)] gi|289698779|gb|EFD66208.1| response regulator [Streptomyces lividans TK24] Length = 217 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 46/118 (38%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVI-------IEAHGACYQVITDFLELFKKRSSAARNLTE 176 L + + L + + I A + +T + K + LT Sbjct: 90 LRVGVRAVLSAETSVEELVHVIRTITEVNAIIAPEEAQEALTRYWR-SKAPKNLRPELTP 148 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RET L L G T+ E+A L +S TV +++ KL A R QA+A A G + Sbjct: 149 RETEVLLLLTQGKTNTEMAATLSVSPTTVRSHVHRILRKLGAATRAQAVAIAYESGLL 206 >gi|15677121|ref|NP_274273.1| LuxR family transcriptional regulator [Neisseria meningitidis MC58] gi|218768252|ref|YP_002342764.1| putative two-component system response regulator [Neisseria meningitidis Z2491] gi|7226490|gb|AAF41630.1| transcriptional regulator, LuxR family [Neisseria meningitidis MC58] gi|121052260|emb|CAM08585.1| putative two-component system response regulator [Neisseria meningitidis Z2491] gi|325140520|gb|EGC63041.1| transcriptional regulatory protein DegU [Neisseria meningitidis CU385] Length = 218 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ L + A G ++ ++ + + A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 LEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|297156887|gb|ADI06599.1| response regulator receiver protein [Streptomyces bingchenggensis BCW-1] Length = 222 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLT 175 + GY++ + + + A G ++ L +A+ LT Sbjct: 102 MRAGARGYLLKGAGRDEILRALHTVARGGAVFSPRMAERLGTLLGSFGTASAKEAFPTLT 161 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+L G +IA++L ++ TV ++GS KL +R QAI +A G Sbjct: 162 AREREVLELLAGGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVRDRAQAIVRAREAGL 219 >gi|37676847|ref|NP_937243.1| response regulator [Vibrio vulnificus YJ016] gi|326424276|ref|NP_762663.2| nitrate/nitrite response regulator protein [Vibrio vulnificus CMCP6] gi|37201391|dbj|BAC97213.1| response regulator [Vibrio vulnificus YJ016] gi|319999662|gb|AAO07653.2| Nitrate/nitrite response regulator protein [Vibrio vulnificus CMCP6] Length = 210 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L E++ +AH A V+ +L ++ + LTERE L Sbjct: 98 AGADGYLLKDTEPDELV-ELLEKAHLGDKAYSSVVAKYLLQREENTDVFDELTERERQIL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 Q G+ +++IA++L +S TV ++ S KL +R A + Sbjct: 157 QEVARGFRNKQIADRLFISESTVKVHMKSLLKKLKVPSRTAATVLFLER 205 >gi|330468229|ref|YP_004405972.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328811200|gb|AEB45372.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 208 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 7/112 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L G+++ + L + + A G +++ + L+ Sbjct: 94 LTAGACGFLLKDAPPTDLLDGIRRAAAGDSPFSQEVLRRLVHRAVHARTGSPEPVGGLSA 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 RE L+L +G ++ EIAE+L + V TV ++ S K + NR++ A Sbjct: 154 REQEVLRLVAEGLSNAEIAERLHIGVTTVKTHITSLMTKTGSPNRVRLALLA 205 >gi|316985109|gb|EFV64062.1| transcriptional regulatory protein degU [Neisseria meningitidis H44/76] gi|325200119|gb|ADY95574.1| transcriptional regulatory protein degU [Neisseria meningitidis H44/76] Length = 218 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ L + A G ++ ++ + + A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 LEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|284991855|ref|YP_003410409.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284065100|gb|ADB76038.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 248 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFL-ELFKKRSSAARNLTERETSC 181 G++ T + V A G +++T L L ++ LTERE Sbjct: 133 AGAAGFIAKTQRLDDVIEGVRAAAQGESVVNVKLLTRLLPRLHRQSGGGGAVLTEREREI 192 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G ++ +IA++L +SVHTV ++ + + KL A ++++ ++ A+R G + Sbjct: 193 LDLLARGLSNADIAQQLTISVHTVRNHVANLSAKLGAHSKLEVLSIAVRDGLV 245 >gi|256823996|ref|YP_003147956.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687389|gb|ACV05191.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 201 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G+V+ L V A G V D + + L+ RET L+ Sbjct: 94 LDAGASGFVVKDCPPTELLEAVRRTAAGL-RTVDADLAA--ESALAGPNPLSPRETDVLR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG EIA L LS TV +L SA K A A A G++ Sbjct: 151 LAADGQGVAEIAGALFLSPGTVRNHLSSAIGKTGARTSAGAATTARDNGWL 201 >gi|291456580|ref|ZP_06595970.1| putative two-component regulator [Bifidobacterium breve DSM 20213] gi|291381857|gb|EFE89375.1| putative two-component regulator [Bifidobacterium breve DSM 20213] Length = 268 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 36/67 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ Sbjct: 202 DPELELLTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVF 261 Query: 228 AIRFGYI 234 A G + Sbjct: 262 AYDNGLV 268 >gi|73541423|ref|YP_295943.1| two component LuxR family transcriptional regulator [Ralstonia eutropha JMP134] gi|72118836|gb|AAZ61099.1| two component transcriptional regulator, LuxR family [Ralstonia eutropha JMP134] Length = 257 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFK----------K 166 L +GY++ + L+ + G QV+ + Sbjct: 129 LRAGASGYLLKERDDTELSVSLRSALRGGMPIDPFIARQVLRSLVPADPHAACSPPAGCA 188 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 A L+ RE L+ G T+ EIA L LS T+ +++ + KL R QA Sbjct: 189 GPEARSPLSTRELEILRCIDRGATNREIAAALSLSTLTIESHVKNIHKKLGVKTRTQATF 248 Query: 227 KAIRFGYI 234 +A R+G + Sbjct: 249 EARRYGLL 256 >gi|19552175|ref|NP_600177.1| two-component system, response regulator [Corynebacterium glutamicum ATCC 13032] gi|62389840|ref|YP_225242.1| two component response regulator [Corynebacterium glutamicum ATCC 13032] gi|21323716|dbj|BAB98342.1| Two-component system, response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Corynebacterium glutamicum ATCC 13032] gi|41325175|emb|CAF19656.1| putative two component response regulator [Corynebacterium glutamicum ATCC 13032] Length = 203 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ TS A + H + + + S+ LT RE L+ Sbjct: 96 LAAGVLGFLPKTSTADEFATAIRTV-HAGRRYIDPELAAMT--ISAGESPLTNREEEVLE 152 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG G ++EEIA L+ T YL A K+ A NR +A +A G++ Sbjct: 153 LAGQGLSAEEIAVAAHLAPGTTRNYLSQAMTKVGAQNRFEAFTRARELGWL 203 >gi|309813018|ref|ZP_07706746.1| response regulator receiver domain protein [Dermacoccus sp. Ellin185] gi|308433090|gb|EFP56994.1| response regulator receiver domain protein [Dermacoccus sp. Ellin185] Length = 258 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 33/63 (52%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +LT RE L L G G ++ EIA L + TV ++ + +KL +R+QA+ A Sbjct: 192 DDLTPREREVLGLLGRGLSNAEIAAALFVGEATVKTHVSNVLMKLGLRDRVQAVVAAYET 251 Query: 232 GYI 234 G + Sbjct: 252 GLV 254 >gi|323180293|gb|EFZ65845.1| transcriptional regulator, LuxR family protein [Escherichia coli 1180] Length = 123 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D ++ R S+ LT RE+ Sbjct: 10 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMDCGKISS-RYSSDNQLTNRESEI 68 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS T+ + + KLD + I+ I A+R G Sbjct: 69 LQLIADGKTNKEIANFLQLSRKTIETHRLNIMKKLDVYSGIELIKTALRMG 119 >gi|294054526|ref|YP_003548184.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293613859|gb|ADE54014.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 210 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 3/109 (2%) Query: 127 HKNGYVIF-TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY+ +L + + A G + + R A++LT+RE L+L Sbjct: 100 GVVGYLTKKAGNAEILIDAIREVAAGE--EFFPAVIAKKLNRRKEAKDLTDRELKVLELL 157 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EI +++ L++ V ++ KL A++R QA+ KA G + Sbjct: 158 ARGCSNKEIMDEMNLTLTMVKYHIVQTREKLGALDRTQAVVKAFERGIL 206 >gi|302544568|ref|ZP_07296910.1| two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302462186|gb|EFL25279.1| two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 240 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + + + G ++ L+ F + LT+RE Sbjct: 125 GARGYVTKTITGTDLVDAIFRVSEGDAVFSPRLAGFVLDAFASTDAPPVDEDMDRLTQRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 185 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 240 >gi|170751099|ref|YP_001757359.1| two component LuxR family transcriptional regulator [Methylobacterium radiotolerans JCM 2831] gi|170657621|gb|ACB26676.1| two component transcriptional regulator, LuxR family [Methylobacterium radiotolerans JCM 2831] Length = 196 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 48/108 (44%), Gaps = 10/108 (9%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + Y+ +F MLA V++E + + A +LT RE L A Sbjct: 98 GADDYLTKPIDFEMLA--VVVEHRLRAGR--------GGQSQDAFGHLTGREREVLTWAS 147 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G TS EIA L L TVN + A +L+ VNR A+A+A+ I Sbjct: 148 RGKTSAEIALILDLRERTVNFHFDQAMKRLNVVNRTHAVARALSLRLI 195 >gi|99080801|ref|YP_612955.1| two component LuxR family transcriptional regulator [Ruegeria sp. TM1040] gi|99037081|gb|ABF63693.1| two component transcriptional regulator, LuxR family [Ruegeria sp. TM1040] Length = 214 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 49/115 (42%), Gaps = 9/115 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERE 178 L G++ T L N V + G Y + EL ++ +SA + L+ RE Sbjct: 103 LDAGAIGFIPKTMGAQSLLNAVRFMSAGEIYVPV----ELMREEASAPEHPLLAQLSPRE 158 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L G +++EIA L L T+ ++ + KLDA NR QA A G Sbjct: 159 VEVLSGLCRGQSNKEIARDLNLQEVTIKLHVRTLCRKLDAKNRTQAAMTAKEAGL 213 >gi|307332414|ref|ZP_07611482.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306881948|gb|EFN13066.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 240 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + + + G ++ L+ F + LT+RE Sbjct: 125 GARGYVTKTITGTDLVDAIFRVSEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 184 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 185 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 240 >gi|119714200|ref|YP_919342.1| response regulator receiver [Nocardioides sp. JS614] gi|119526109|gb|ABL79479.1| response regulator receiver [Nocardioides sp. JS614] Length = 214 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 9/116 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRS-----SAARNLTER 177 +GY++ SE + + A G QV L +R+ SA L+ R Sbjct: 97 AGASGYLVKGSEPEDIERALRAVARGQVVFGEQVAAAVLAQAGRRTTVASVSAFPLLSAR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L G ++ EIA L +S T ++ S KL R +A+A+A G Sbjct: 157 EVEVLDLIAAGRSNAEIAASLVVSPKTAKNHVSSILTKLGCT-RTEAVARARDAGL 211 >gi|320009389|gb|ADW04239.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 210 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 38/109 (34%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + S LTERE L Sbjct: 101 AGATGYLLKAERPEELFAAIRAAAQGRTTLSPPVASRVMARMRSPRPTLTERELDILGQL 160 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + +IA L +S TV +LG KL R A++ A + Sbjct: 161 SQGLGNRDIARALFISEATVKTHLGRIYEKLGVDTRAGAVSVAKEQRLL 209 >gi|318060640|ref|ZP_07979363.1| two component system response regulator [Streptomyces sp. SA3_actG] Length = 226 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 14/125 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE-------LFKKRSS 169 L G++ +E L + A G A +IT FL S+ Sbjct: 97 LRAGAAGFLGKGAEPSELLGAIRTAAAGDALLSPAATRSLITRFLAQAPGTGPATGVDSA 156 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L G +++EIA +L +S TV ++ A K+ A +R Q + A Sbjct: 157 RLAALTGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAY 216 Query: 230 RFGYI 234 G + Sbjct: 217 ETGLV 221 >gi|313832363|gb|EFS70077.1| response regulator receiver domain protein [Propionibacterium acnes HL007PA1] Length = 218 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L +G+++ + L + + A G +++ + AA Sbjct: 97 LKAGASGFLLKDARPTELLSAIRNVADGDAVVAPSAPRRLLDHVVPTLPNDPKAADKRLS 156 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G T+ EIA+ L ++ TV ++G KL+ +R+ + A G Sbjct: 157 VLTDREKEVLVEIAKGATNAEIAQTLYMAEGTVKTHIGRLLSKLECRDRVGLVLFAHEVG 216 Query: 233 YI 234 + Sbjct: 217 LL 218 >gi|227111773|ref|ZP_03825429.1| transcriptional regulator NarP [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 210 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 1/104 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIE-AHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 + +GY++ S L + + + A + + + S LTERE L Sbjct: 99 MDAGADGYLLKDSAPEHLLDAIRNDDAFSEQVREVLRHRIAIQDTPSPFTVLTERELDVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 159 QEVASGLSNKQIASVLYISEETVKVHIRNMLRKLNVRSRVAATV 202 >gi|261251088|ref|ZP_05943662.1| DNA-binding response regulator LuxR family [Vibrio orientalis CIP 102891] gi|260937961|gb|EEX93949.1| DNA-binding response regulator LuxR family [Vibrio orientalis CIP 102891] Length = 209 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 47/114 (41%), Gaps = 4/114 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR----NLTERETSC 181 GYV+ L + A G Y L ++ + A L++RE+ Sbjct: 96 AGAKGYVLKDVGSEELVMAINQVAQGRSYLCPQASDRLLEQINEAPEEKDDTLSKRESDV 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+ +G ++EIA+ L +SV TV + KL A + + A++ G + Sbjct: 156 LKAIANGAGNKEIADSLHISVRTVETHRLRIKKKLGATSTAALVKLALQKGLVT 209 >gi|258651449|ref|YP_003200605.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554674|gb|ACV77616.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 198 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 7/109 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G++ + + + + + T L + LTERE L+ Sbjct: 97 GARGFLRWDATQPEIVAALADT-------LTTPRLPALRDTPDGEAPLTEREMQVLRGMS 149 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G ++ EI +L LS TV + KL A +R QA+A R G++ Sbjct: 150 QGQSNGEIGRELFLSEDTVKTHARRLFRKLGARDRAQAVALGFRRGFVA 198 >gi|90407707|ref|ZP_01215886.1| nitrate/nitrite response regulator protein NarP [Psychromonas sp. CNPT3] gi|90311176|gb|EAS39282.1| nitrate/nitrite response regulator protein NarP [Psychromonas sp. CNPT3] Length = 211 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 5/106 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRS--SAARNLTERETS 180 NGY + S+ +L + + G +I +L ++ + NLT+RE Sbjct: 99 HGANGYFLKDSDASLLLSNINKVLAGELVLSDDLIKYLNDLDEEDNIREKLNNLTKRERQ 158 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LQ G +++EI+ L +S TV ++ S KL A +R++A Sbjct: 159 ILQEIAKGQSNKEISINLHISEGTVKVHVKSLLKKLQAKSRVEAAI 204 >gi|284028619|ref|YP_003378550.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283807912|gb|ADB29751.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 218 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL-----ELFKKRSSAA 171 L +G+++ + L V + A G ++I F + + Sbjct: 94 LQAGASGFLLKDTPPRELVQAVRVVAAGDAMLSPAVTRRLIGHFAADQRTDRQRLAKQRL 153 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L G G ++ +I L +S TV A++ VKLDA NR+Q A Sbjct: 154 SRLTDREVEVLVAVGRGLSNADIGRSLFMSEATVKAHVSRVLVKLDATNRVQVAILAHEA 213 Query: 232 GYI 234 G + Sbjct: 214 GLL 216 >gi|221633170|ref|YP_002522395.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum DSM 5159] gi|221156902|gb|ACM06029.1| nitrate/nitrite response regulator protein [Thermomicrobium roseum DSM 5159] Length = 261 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 2/102 (1%) Query: 136 SEFLMLANEVIIEAHGACYQV--ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEE 193 + L +++ H A + + ++ S LT RE L G +++E Sbjct: 150 AGEDRLPQQILDRPHLARRVLGELQRYVVGEAGLESPDAVLTVRELQVLDCVAQGMSNKE 209 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 IAE L ++ TV ++ S KL A +R+ I A+R G++ Sbjct: 210 IAEALFITEQTVKNHMTSILRKLGAQDRVDVILAAVRQGWVA 251 >gi|220920519|ref|YP_002495820.1| LuxR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gi|219945125|gb|ACL55517.1| transcriptional regulator, LuxR family [Methylobacterium nodulans ORS 2060] Length = 123 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 38/69 (55%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 + LT RE L L +G +++ IA +LG+SVHT ++GS KLDA R A+ Sbjct: 53 PDAGPDVGLTPREIEVLSLLAEGASNKAIARRLGISVHTAKFHVGSLLDKLDATGRTDAV 112 Query: 226 AKAIRFGYI 234 A A R G I Sbjct: 113 AHAARRGVI 121 >gi|254228707|ref|ZP_04922130.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262396571|ref|YP_003288424.1| transcriptional regulator VpsT [Vibrio sp. Ex25] gi|151938654|gb|EDN57489.1| transcriptional regulator, LuxR family protein [Vibrio sp. Ex25] gi|262340165|gb|ACY53959.1| transcriptional regulator VpsT [Vibrio sp. Ex25] Length = 210 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L++ +G ++ EIA+ L +S HT+ ++L + KL+ NR QA + Sbjct: 145 EPAIEVELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATS 204 Query: 227 KAIR 230 A R Sbjct: 205 WARR 208 >gi|70730988|ref|YP_260729.1| LuxR family transcriptional regulator [Pseudomonas fluorescens Pf-5] gi|68345287|gb|AAY92893.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens Pf-5] Length = 240 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 80/208 (38%), Gaps = 15/208 (7%) Query: 36 YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLF-HFNSGLLPIIWQSIQE 94 ++ D +++ + +Y D L H + P IW Sbjct: 39 FSFILRSDLKSHSKVVYNIDSYSYAWRRDYEAEKFWIVDPILKIHSPTPYFPTIWSDD-- 96 Query: 95 ETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFL-MLANEVIIEAHGAC 153 IES L + G L +G++ + F G + S L ++ Sbjct: 97 --FIESKLFLQAGKDYGFL--SGMSIGLPCSFGNYGVLSIASLKQGSLQGVDPLDWSACV 152 Query: 154 YQVITDFLELFKKRSSAAR-------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 +V ++ ++ S R L +RE L+ DG +S +IA ++ LS +++ Sbjct: 153 LKVYAKLIDYINRQHSLQRIFNDHQQALNDREIDILRYTADGMSSTDIAMRMHLSKSSID 212 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ KLD+ N+ QA+A AI+ G I Sbjct: 213 YHIAKILQKLDSPNKHQALALAIKKGKI 240 >gi|15614660|ref|NP_242963.1| two-component response regulator [Bacillus halodurans C-125] gi|10174716|dbj|BAB05816.1| two-component response regulator [Bacillus halodurans C-125] Length = 210 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA------CYQVITDFLELFKKRSSAARNLTER 177 L +GY++ + L + +G + L ++ LT R Sbjct: 94 LKLGVSGYMLKDGDTESLIRSIKSALNGGLSLEDQVAAKVMPVLLQHEEAIPIDPTLTPR 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L+ G+G ++E+AE+LGLSV TV KL +R Q AIR + Sbjct: 154 EIAILKCIGEGLNNKEVAERLGLSVGTVKNQTSQILDKLALRDRTQLAIYAIRHRLV 210 >gi|325926758|ref|ZP_08188066.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] gi|325542839|gb|EGD14294.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Xanthomonas perforans 91-118] Length = 210 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLEL---FKKRSSAARNLTERETS 180 G+++ + L + A G V TD + F+ + + ERE + Sbjct: 97 AGAQGFLLKDAAPEDLREAIERVAAGDTLLQPVSTDPVRARYQFRDQQAPRETFNEREVA 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY+++EIA L L+ TV Y+ + KL +R +A+ KAI I Sbjct: 157 ILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILEKLGTRDRTRAVLKAITLRVI 210 >gi|153206810|ref|ZP_01945651.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat Q177'] gi|165924176|ref|ZP_02220008.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334] gi|212212538|ref|YP_002303474.1| response regulator [Coxiella burnetii CbuG_Q212] gi|212218401|ref|YP_002305188.1| response regulator [Coxiella burnetii CbuK_Q154] gi|120577173|gb|EAX33797.1| transcriptional regulator, LuxR family [Coxiella burnetii 'MSU Goat Q177'] gi|165916380|gb|EDR34984.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 334] gi|212010948|gb|ACJ18329.1| response regulator [Coxiella burnetii CbuG_Q212] gi|212012663|gb|ACJ20043.1| response regulator [Coxiella burnetii CbuK_Q154] Length = 214 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 6/121 (4%) Query: 120 FPVRL-GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARN--- 173 P+RL G++ +S+ L + G Y I + L L K ++A Sbjct: 89 LPMRLLEVGVRGFITKSSDTTELEQAIRAVYKGQRYISSAIANRLALSKTTTAATSPFKK 148 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L L G +E IA++L ++ TVN++ KL N ++ I A+++G Sbjct: 149 LSDREMEVLLLLAKGKKAEAIAKQLHITGKTVNSHRYRIFEKLGVKNDVELIKLAVQYGL 208 Query: 234 I 234 + Sbjct: 209 V 209 >gi|15613614|ref|NP_241917.1| two-component response regulator [Bacillus halodurans C-125] gi|10173666|dbj|BAB04770.1| two-component response regulator [Bacillus halodurans C-125] Length = 212 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 8/115 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLEL-FKKRSSAARNLT 175 L + GY++ ++ L + + +G +V+ L + LT Sbjct: 94 LKYGACGYLLKDADADRLIHSIKSALNGGMSLDDTVAAKVLPRLLHQQTGEVEERTARLT 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +RE + ++L G+G +++EIA+ L LSV TV Y+ A KL+ +R Q A++ Sbjct: 154 KRELAVVKLVGEGKSNQEIADALFLSVGTVKNYISQALDKLELRDRTQLAIYAVK 208 >gi|253996742|ref|YP_003048806.1| two component LuxR family transcriptional regulator [Methylotenera mobilis JLW8] gi|253983421|gb|ACT48279.1| two component transcriptional regulator, LuxR family [Methylotenera mobilis JLW8] Length = 212 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERET 179 L GY+ S L + A G Y + ++ + L+ RE Sbjct: 96 LNAGAMGYLTKRSAAEELIKAIRTVAGGKKYLEASVAQQMAIQQLSGDQNPVDVLSPREF 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EIAE L LS TV +L + KL+A N + A+R G + Sbjct: 156 EVFMALAKGKTTNEIAETLFLSPRTVGTHLYNIKQKLNANNSAEIALIAMRSGLL 210 >gi|227514972|ref|ZP_03945021.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] gi|227086671|gb|EEI21983.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931] Length = 217 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 21/143 (14%) Query: 104 LSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 LS+ E + A + G YV+ +S + + ++G Y I + + L Sbjct: 82 LSMHEEQEYINKA-----IHNGAMS--YVLKSSPDSEILRALTQVSNGENY--IDENITL 132 Query: 164 FKKRSS------------AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 KK S +L++RE L GYT++EIA KL +S TV A+ + Sbjct: 133 TKKDLSQINFDGVDVNLTGYNSLSKREREVFPLVALGYTNKEIAAKLFISTKTVEAHKAN 192 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 KL NR + AI I Sbjct: 193 IVRKLKLENRADLVRYAIHHHLI 215 >gi|217978486|ref|YP_002362633.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] gi|217503862|gb|ACK51271.1| two component transcriptional regulator, LuxR family [Methylocella silvestris BL2] Length = 209 Score = 92.3 bits (228), Expect = 5e-17, Method: Composition-based stats. Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 1/100 (1%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G++ +S LA + G Y + K+ + A LT R+ + L L Sbjct: 99 GAAGFIPKSSSMEDLAAALKQVLDGGVY-IPGSDEAREKRGPAEADALTPRQLAVLGLLS 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 G +++EIA L +S TV ++ + KL R QAI Sbjct: 158 AGKSNKEIARALSISDLTVKVHITTIFRKLGVATRTQAIV 197 >gi|320160659|ref|YP_004173883.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] gi|319994512|dbj|BAJ63283.1| NarL family two-component response regulator [Anaerolinea thermophila UNI-1] Length = 215 Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 6/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH--GACYQVITDF----LELFKKRSSAARNLTER 177 L GY++ + L + A GA + +T + ++ + LTER Sbjct: 96 LSAGATGYLLKDASPEELVKAIEQVAQGEGALHPAVTRYVLGQIKNMPDEPAPEEELTER 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E LQ GY++ EIA L +S TV+ ++ KL+ +R QA+ A++ G + Sbjct: 156 EKEVLQFMAQGYSNAEIARLLVVSNATVHTHVSRILSKLNVSSRTQAVLYALKRGIVS 213 >gi|313668365|ref|YP_004048649.1| two-component system response regulator [Neisseria lactamica ST-640] gi|313005827|emb|CBN87281.1| putative two-component system response regulator [Neisseria lactamica 020-06] Length = 218 Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ L + A G ++ ++ + + A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 LEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|298251689|ref|ZP_06975492.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546281|gb|EFH80149.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 225 Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAAR-------- 172 L GY++ S + + A G Q ++ L+ ++ SA Sbjct: 97 LQAGVRGYLLKESSLETVLQAIESAARGDMLQQPELMKRILDHATQKRSAPSAAHENSDF 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G +E+ +LG++ TV +YL S KL+ +R A+A AI G Sbjct: 157 HLTAREREVLAGIASGERGKEVGARLGITRRTVESYLNSIYTKLNVDSRAAAVAIAIEHG 216 Query: 233 YI 234 + Sbjct: 217 LL 218 >gi|269219143|ref|ZP_06162997.1| DNA-binding response regulator VraR [Actinomyces sp. oral taxon 848 str. F0332] gi|269211290|gb|EEZ77630.1| DNA-binding response regulator VraR [Actinomyces sp. oral taxon 848 str. F0332] Length = 235 Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L Y++ + + + + G +++ ++L S ++ Sbjct: 116 LQAGAGAYLLKNTSPEDIVKSIREVSSGGTVVSPGPTSRLVKNYLVPLPPDSGVNVQFSK 175 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L +++ EIA +L + TV ++ S KL+ +R++ + +A G + Sbjct: 176 REMDVLRLLCQAHSNSEIAAQLYVQESTVKTHISSIMAKLEVNSRLKVVVRAYELGLV 233 >gi|229131918|ref|ZP_04260783.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196] gi|228651509|gb|EEL07479.1| Sensory transduction protein ydfI [Bacillus cereus BDRD-ST196] Length = 207 Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERET 179 GY++ ++ L + G +++ + A NLT++E Sbjct: 91 GAKGYLLKDTDRENLFRTLEAAIRGEILLQPNIMEKIVKYKRKEVHADKVAENNLTDKEL 150 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ GY ++EIA +G++ TV A+L + KL +R +A+A +I I Sbjct: 151 FVLKAIARGYKNKEIAFDMGIAERTVKAHLTNIYNKLGVNSRSEAVAVSIERKLI 205 >gi|167615608|ref|ZP_02384243.1| DNA-binding response regulator [Burkholderia thailandensis Bt4] gi|257142156|ref|ZP_05590418.1| DNA-binding response regulator [Burkholderia thailandensis E264] Length = 214 Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 8/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KKRSSAARNLTERE 178 F +GY++ + + G + E + +S LT RE Sbjct: 93 FGASGYLLKWCSPDGIVQAIRRVMAGRV-HIDPSLDEARVASAAGGRALASPVDELTRRE 151 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L DG + EIA L +S TV+ + KL A N I A R+GY Sbjct: 152 KQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVANVIHWAYRYGY 206 >gi|153832913|ref|ZP_01985580.1| nitrate/nitrite response regulator protein NarP [Vibrio harveyi HY01] gi|148870836|gb|EDL69735.1| nitrate/nitrite response regulator protein NarP [Vibrio harveyi HY01] Length = 210 Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 5/112 (4%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ +E L E++ +AH A Q + +L + + LT+RET LQ Sbjct: 99 GADGYLLKDTEPDELV-ELLKQAHEGDKAYSQAVAKYLNEREGQEDVFDTLTDRETQILQ 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234 G+ +++IA++L +S TV ++ S KL +R A + RFG I Sbjct: 158 EVARGFRNKQIADRLFISESTVKVHMKSLLKKLKVPSRTAATVLYLERFGEI 209 >gi|21222754|ref|NP_628533.1| two component system response regulator [Streptomyces coelicolor A3(2)] gi|10129764|emb|CAC08319.1| putative two component system response regulator [Streptomyces coelicolor A3(2)] Length = 226 Score = 92.0 bits (227), Expect = 5e-17, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR-------- 172 LG GY+ + + + G +V L + +++ A Sbjct: 103 LGAGARGYLTKNAGRQDITRAIRAAGAGQSVLDREVQNRLLATARTKAAPAPGDAARQPL 162 Query: 173 --NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L L G G ++ IAEKL +S TV ++ + K +R A+ +AI Sbjct: 163 PDDLTPREREVLALIGQGLSNRGIAEKLFISEATVKTHINNLFAKAHIRDRADAVRRAIG 222 Query: 231 FGY 233 G Sbjct: 223 AGL 225 >gi|319948180|ref|ZP_08022340.1| putative two-component system response regulator [Dietzia cinnamea P4] gi|319438164|gb|EFV93124.1| putative two-component system response regulator [Dietzia cinnamea P4] Length = 217 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK----------RSSAARN 173 L +G+++ + L V + A G T L ++ + + Sbjct: 97 LRLGCSGFLLKGAPADELFRAVRVVAAGEALLAPTVTRRLIRETVLRNRRPRRTARELDS 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE ++ G ++ EIA L +S TV ++ KL +R Q + A G Sbjct: 157 LTPREREMVEQIATGRSNAEIATALFISEETVKTHVRRVLQKLSLRDRAQVVVYAYENGV 216 Query: 234 I 234 + Sbjct: 217 V 217 >gi|78484154|dbj|BAE47185.1| response-regulator protein [Streptomyces sp. AJ9463] Length = 216 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNL-- 174 L G+++ +E L + V A G ++I +F R + A +L Sbjct: 94 LRAGAAGFLLKNAEARELLDAVRTVARGEGLIAPAVTRRLIAEFAGTAPVRPAKAPDLSV 153 Query: 175 ----TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T RE L GDG ++ EIA +L ++ TV ++ KL+ +R+QA A Sbjct: 154 LDVLTRREREVLGCLGDGLSNAEIAVRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQE 213 Query: 231 FGY 233 G Sbjct: 214 LGI 216 >gi|148264823|ref|YP_001231529.1| two component LuxR family transcriptional regulator [Geobacter uraniireducens Rf4] gi|146398323|gb|ABQ26956.1| two component transcriptional regulator, LuxR family [Geobacter uraniireducens Rf4] Length = 214 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 6/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTER 177 L GY+ L + G +++ A LT+R Sbjct: 95 LEAGARGYLAKDCAAEELVAAIRTVFAGKPYFCAGATEIMIKGFAPGSASQQIAPVLTKR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L+L +GY ++EIA LG+S+ + + + KL + Q A+R G I Sbjct: 155 EREVLKLTAEGYNTKEIAFTLGVSIKMIEIHRMNIRKKLGLKSIAQLATYAVRIGLIS 212 >gi|239941886|ref|ZP_04693823.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291445336|ref|ZP_06584726.1| response regulator [Streptomyces roseosporus NRRL 15998] gi|291348283|gb|EFE75187.1| response regulator [Streptomyces roseosporus NRRL 15998] Length = 234 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 50/113 (44%), Gaps = 8/113 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN-----LT 175 L G+++ S L V + A G +V+ + K ++ A LT Sbjct: 97 LRAGAAGFLLKDSAVDELIPGVRLLAAGGSALSERVVRSLPDGAGKEAAPADPPGARLLT 156 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 RE L+L G ++EEI +L LS TV ++ S KL A NR+QA A Sbjct: 157 AREREVLELLPSGMSNEEIGRRLFLSRTTVRDHVSSLLAKLGAANRVQAAVIA 209 >gi|134096765|ref|YP_001102426.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005191|ref|ZP_06563164.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133909388|emb|CAL99500.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 211 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 7/113 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERE 178 +GY++ L N V A G +V+ + LTERE Sbjct: 95 AGASGYLLKQVRGQDLVNAVREVAAGRSLLDPVTTARVLDRLRQSTSPVPDELDALTERE 154 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+L G+G T+ +IAE+L L+ TV Y+ + KL R QA A R Sbjct: 155 RKVLELIGEGLTNRQIAERLFLAEKTVKNYVTAVLAKLGMERRTQAAAWVARR 207 >gi|89073186|ref|ZP_01159725.1| putative nitrate/nitrite response regulator protein [Photobacterium sp. SKA34] gi|89051139|gb|EAR56596.1| putative nitrate/nitrite response regulator protein [Photobacterium sp. SKA34] Length = 208 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 2/103 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSC 181 L +GY++ +E L ++ G A ++ + LE ++ LTERET Sbjct: 96 LNAGADGYLLKDTEPDELIEQLKSALCGGKAYSDIVKESLESPNTPTNILSQLTERETQI 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LQ G + +IAE+L +S TV ++ S KL +R A Sbjct: 156 LQEVAKGQRNRQIAEQLFISEATVKVHMKSLLKKLQVKSRTAA 198 >gi|307244636|ref|ZP_07526740.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492017|gb|EFM64066.1| response regulator receiver domain protein [Peptostreptococcus stomatis DSM 17678] Length = 216 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 36/62 (58%) Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 K+ + + L+ERE L+L DG +++EIA KL LS TV Y+ S VKLD +R Q Sbjct: 151 KKENLTKVLSEREIDVLELIADGLSNKEIAGKLYLSEGTVRNYISSILVKLDLRDRTQLA 210 Query: 226 AK 227 Sbjct: 211 IY 212 >gi|291303524|ref|YP_003514802.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290572744|gb|ADD45709.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 217 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA------RNLTE 176 GYV T L + A G ++ L+ F +S A LT Sbjct: 100 AGARGYVTKTIAASELVAAIRRVAEGDAVFSPRLAGFVLDAFASKSQAPASDPELDQLTN 159 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L GY +EIA +L +S+ TV ++ + KL NR + A+ + Sbjct: 160 REREVLRLLARGYAYKEIARELYISIKTVETHVSNVLRKLQMSNRYELSRWAVDRRIV 217 >gi|152981499|ref|YP_001354599.1| LuxR family DNA-binding response regulator [Janthinobacterium sp. Marseille] gi|151281576|gb|ABR89986.1| DNA-binding response regulator, LuxR family [Janthinobacterium sp. Marseille] Length = 248 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-ELFKKRSSAARNLTERETSCLQ 183 +GY++ + L + Y ++ L L + S + +T RE L+ Sbjct: 140 AAGADGYLLKLEDSSELLEAIPTVLDNRRY--VSKLLGPLTHFQDSEDQAVTPREQQILK 197 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G +S+EIA+ L LSV TV + + KL N ++ A+ G + Sbjct: 198 LVAAGKSSQEIADTLELSVFTVRKHKQNLMAKLSLHNAVELTRYAMHQGLL 248 >gi|325144605|gb|EGC66904.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M01-240013] Length = 218 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ L + A G ++ ++ + + A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQSTQGTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 LEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|296332888|ref|ZP_06875348.1| YdfI [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673234|ref|YP_003864906.1| two-component response regulator [Bacillus subtilis subsp. spizizenii str. W23] gi|296150168|gb|EFG91057.1| YdfI [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411478|gb|ADM36597.1| two-component response regulator (paired with YdfH) [Bacillus subtilis subsp. spizizenii str. W23] Length = 213 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 6/115 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELF---KKRSSAARNLTERETS 180 GY++ + L + + G ++ E+ K+ S+ LTE+E Sbjct: 96 GAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIRLEQMKKQSSDTQLTEKEVI 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+ G+ S+ IA LG+S TV + L S KL A +R +A+ A++ G + Sbjct: 156 VLKAIAKGFKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQRGILT 210 >gi|320007550|gb|ADW02400.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 227 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA--RNL 174 L G+++ +E L V + A G ++I F+ R++A L Sbjct: 96 LRAGAAGFLLKDTEPAELLRAVEVAAGGEALLSPAVTRRLIGAFVSRPPDRATAPGLETL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE LA G T++EIA + +S T ++ A KL A +R Q + A G + Sbjct: 156 TRREREATALAARGLTNDEIAVHMVVSPLTAKTHISRAMTKLRARDRAQLVVFAYESGLV 215 >gi|331694203|ref|YP_004330442.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326948892|gb|AEA22589.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 235 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRSSAARNLTER 177 L G++ ++ + + A G + + LT R Sbjct: 118 LRAGAAGWLSKDADADAIGRALHSAADGQGTIDAGALARLVAASQPAPAGGEPPDGLTPR 177 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L G ++ EIA +L + T+ ++ K +R QA+ A R G Sbjct: 178 EVEVLALIAQGLSNREIARRLVVGEATIKTHVNHLFAKAGLRDRAQAVNYAYRHGL 233 >gi|239981400|ref|ZP_04703924.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291453255|ref|ZP_06592645.1| two component response regulator MppU [Streptomyces albus J1074] gi|291356204|gb|EFE83106.1| two component response regulator MppU [Streptomyces albus J1074] Length = 223 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--L 174 L +G+++ S +L V G +++ A R L Sbjct: 98 LRNGASGFLLKRSGPALLVEAVRAAMAGDSLISPSVTVRLLRHVTGNRTPGDPAPREEAL 157 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE L +G T+ +IA +L +S TV ++ + K NR+ +A GY Sbjct: 158 TEREGEIAALVAEGGTNADIAAELFISPGTVKTHVAAIQRKFGVRNRVGIAVRAFERGY 216 >gi|227329494|ref|ZP_03833518.1| transcriptional regulator NarP [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 210 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 1/104 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII-EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 + +GY++ S L + + +A + + + S LTERE L Sbjct: 99 MDAGADGYLLKDSAPEHLLDAIRNGDAFSEQVRDVLRHRIAIQDTPSPFTVLTERELDVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 159 QEVASGLSNKQIASVLYISEETVKVHIRNMLRKLNVRSRVAATV 202 >gi|225020339|ref|ZP_03709531.1| hypothetical protein CORMATOL_00346 [Corynebacterium matruchotii ATCC 33806] gi|224946728|gb|EEG27937.1| hypothetical protein CORMATOL_00346 [Corynebacterium matruchotii ATCC 33806] Length = 233 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 15/124 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--------------- 170 +G+++ + L + V + LFK+ + Sbjct: 103 AGASGFLLKDTSPEELISAVQSVGESSAVISPAATATLFKRLRTHMAPTVDPMVALNRGL 162 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L G ++ EIA+ L +S+ TV ++G K + +R+ A+ A Sbjct: 163 VEPLTHREAEILLLIARGLSNTEIADHLVISLPTVKTHVGRVLAKTGSRDRVHAVLYAFD 222 Query: 231 FGYI 234 G I Sbjct: 223 RGVI 226 >gi|94314355|ref|YP_587564.1| LuxR family LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93358207|gb|ABF12295.1| ATP-dependent transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 904 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 31/100 (31%), Positives = 48/100 (48%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 ++ + E ++ AC + + R LT +E LQL +GY++ IA Sbjct: 805 AQRDPVLAEFVMRLVQACGPLEESPEPIAGDRPQLLDPLTPKEIRVLQLLAEGYSNSAIA 864 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 EKL +S TV +L + K+ A +R QA+A A R G I Sbjct: 865 EKLFVSDSTVRTHLRNINNKICAHSRTQAVAIARRLGVIA 904 >gi|305680025|ref|ZP_07402835.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] gi|305660645|gb|EFM50142.1| response regulator receiver domain protein [Corynebacterium matruchotii ATCC 14266] Length = 232 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 15/124 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--------------- 170 +G+++ + L + V + LFK+ + Sbjct: 102 AGASGFLLKDTSPEELISAVQSVGESSAVISPAATATLFKRLRTHMAPTVDPMVALNRGL 161 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L L G ++ EIA+ L +S+ TV ++G K + +R+ A+ A Sbjct: 162 VEPLTHREAEILLLIARGLSNTEIADHLVISLPTVKTHVGRVLAKTGSRDRVHAVLYAFD 221 Query: 231 FGYI 234 G I Sbjct: 222 RGVI 225 >gi|158318331|ref|YP_001510839.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113736|gb|ABW15933.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 249 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 14/122 (11%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY--------------QVITDFLELFKKRSSAA 171 +GY++ ++ L + V A G + + SS A Sbjct: 124 AGASGYLLKSARPEELVDAVRRTARGVAVFTAGLAALVLGENSRAARNSGSRSGPGSSTA 183 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L G ++ + A +LG+S TV ++ + KL NR++ A+R Sbjct: 184 PRLTAREVEVLRLVAKGLSARDAARQLGVSHRTVQNHVHNVLGKLQLRNRVELTRFAVRE 243 Query: 232 GY 233 GY Sbjct: 244 GY 245 >gi|330467964|ref|YP_004405707.1| two-component system response regulator [Verrucosispora maris AB-18-032] gi|328810935|gb|AEB45107.1| two-component system response regulator [Verrucosispora maris AB-18-032] Length = 203 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 3/109 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +G++ + LA+ + G + + D + LTERE L Sbjct: 97 GVSGFLPKDAPPTRLADAIRRVHRG---ERVIDSEIVVAAFHHGPNPLTERERDVLTHVA 153 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G ++A KL L+ TV YL + K+ A NR+ AI A G+I Sbjct: 154 KGSDVSDVAAKLYLAPGTVRNYLSAIMSKIGARNRVDAIRIARDRGWIS 202 >gi|325142479|gb|EGC64883.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis 961-5945] gi|325198384|gb|ADY93840.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis G2136] Length = 218 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ L + A G ++ ++ + + A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 LEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|311742977|ref|ZP_07716785.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] gi|311313657|gb|EFQ83566.1| DNA-binding response regulator [Aeromicrobium marinum DSM 15272] Length = 216 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L GY++ + + + G QV+ F + + A +LT Sbjct: 94 LRAGARGYLLKEAGADDVERTLAAVMRGEAVFGPRVAEQVVGFFSGIGRSSPQAFPHLTV 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L G + IA +L +S TV + KL A R +A+A+A G Sbjct: 154 REGEVLDLMARGLDNASIARRLFVSEKTVRNRVSDVLAKLQARTRAEAVARARDAGI 210 >gi|284046422|ref|YP_003396762.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283950643|gb|ADB53387.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 218 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETS 180 L GYV + L + G Y Q+ + AA LT RE Sbjct: 99 LRLGATGYVPKEAAGGHLLEAIAAVMAGGTYLEPQLGARLAATAAAAAGAAPELTARELE 158 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G T+ EIAE+L LSV TV ++ KL R + A+ G + Sbjct: 159 VLRLIARGLTNREIAERLFLSVRTVESHRARIQRKLGRSRRSDLVDYALERGLV 212 >gi|290955347|ref|YP_003486529.1| two-component system regulator [Streptomyces scabiei 87.22] gi|260644873|emb|CBG67959.1| putative two-component system regulator [Streptomyces scabiei 87.22] Length = 236 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 15/125 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAA------ 171 L +G+++ + L + V A G + + + L ++ + Sbjct: 103 LRAGASGFLLKRTAPERLIDAVRTVAAGDTLIDPSVTRALVEHFVLGERTARGPADAADL 162 Query: 172 ---RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 R LT RE L+L +G ++ E+AE LG++ T ++ K+ A +R QA+ A Sbjct: 163 AGLRGLTAREAQVLRLIAEGLSNAELAELLGIAESTAKTHVKRVLHKIGARDRAQAVVLA 222 Query: 229 IRFGY 233 R G Sbjct: 223 YRSGL 227 >gi|21223170|ref|NP_628949.1| two-component system DNA-binding response regulator [Streptomyces coelicolor A3(2)] gi|8218193|emb|CAB92655.1| putative two-component system DNA-binding response regulator [Streptomyces coelicolor A3(2)] Length = 251 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + V G ++ L+ F + LT+RE Sbjct: 136 GARGYVTKTITGTDLVDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 195 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 196 REVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 251 >gi|296314242|ref|ZP_06864183.1| nitrate/nitrite response regulator protein NarL [Neisseria polysaccharea ATCC 43768] gi|296839039|gb|EFH22977.1| nitrate/nitrite response regulator protein NarL [Neisseria polysaccharea ATCC 43768] Length = 218 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ + L + A G ++ + + + A +LT RE Sbjct: 98 GARGYLLKSINADFLLESIRKAADGDNVFSPEMTAKLVRSLISPQPAQGTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AI Sbjct: 158 MEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIHH 210 >gi|45658914|ref|YP_003000.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602159|gb|AAS71637.1| response regulator [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 223 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELF----------KKRSSA 170 L NGYV+ L + G Y + T FL F + A Sbjct: 98 LELGINGYVLKDDAGNDLLRAIEAVHKGETYLSPGITTHFLSGFVGSGKPGEDNQDAKKA 157 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L+L +G ++E I + L +S TV + + KLD + AIR Sbjct: 158 FSVLSDREREILKLVAEGNSNESIGKILRISPATVKVHRANIMKKLDLHKVADLVMYAIR 217 Query: 231 FGYI 234 G I Sbjct: 218 AGLI 221 >gi|1706700|sp|P54293|ESAR_ERWST RecName: Full=Transcriptional activator protein esaR gi|476612|gb|AAA82097.1| esaR [Pantoea stewartii subsp. stewartii DC283] Length = 249 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 65/225 (28%), Gaps = 27/225 (12%) Query: 35 LYTINSALDFPRRQQLICELHNYD--LDSGDIPNILIETY-------GDDFLFHFNSGLL 85 + S L P + N L P+ I Y D + Sbjct: 19 IQRKLSPLGSPDYAYTVVSKKNPSNVLIISSYPDEWIRLYRANNFQLTDPVILTAFKRTS 78 Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI---FTSEFLMLA 142 P W + + L G + + + + ++ L Sbjct: 79 PFAWDE-NITLMSDLRFTKIFSLSKQYNIVNGFTYVLHDHMNNLALLSVIIKGNDQTALE 137 Query: 143 NEVIIEAHGACYQVITDFLE----LFKKRSSAARNL---------TERETSCLQLAGDGY 189 + E G ++ DF E L A L + RE L A G Sbjct: 138 QRLAAE-QGTMQMLLIDFNEQMYRLAGTEGERAPALNQSADKTIFSSRENEVLYWASMGK 196 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T EIA G+SV TV ++ + VKL N QAI + I Sbjct: 197 TYAEIAAITGISVSTVKFHIKNVVVKLGVSNARQAIRLGVELDLI 241 >gi|117927574|ref|YP_872125.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117648037|gb|ABK52139.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 199 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 40/111 (36%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + GY+ L + AH + LTERE L Sbjct: 91 MAGGARGYLTRNVSVEELCAAL---AHVVVDTRMRKMANGDPPPPLIDVPLTERERQVLD 147 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI +L LS T+ + KL A +R QA+A IR G + Sbjct: 148 GMSRGMSNYEIGRELFLSEDTIKTHARRLFRKLGATDRAQAVALGIRAGLV 198 >gi|288962660|ref|YP_003452954.1| two-component response regulator [Azospirillum sp. B510] gi|288914926|dbj|BAI76410.1| two-component response regulator [Azospirillum sp. B510] Length = 229 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTERE 178 +GY++ SE + + V G +I + K A LT RE Sbjct: 110 AGASGYILKDSEPVDMVEAVRGLIEGRSPISASIARYIIRRVQDGSFKDRKPAPLLTPRE 169 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T L G+T +IA++LGLS TV +Y+ + KL+ +R +A+ +AI I Sbjct: 170 TDILWGIAKGFTYNDIADRLGLSRQTVPSYIKNIYRKLEVNSRSEAVYEAIGRKLI 225 >gi|239929404|ref|ZP_04686357.1| two-component system DNA-binding response regulator [Streptomyces ghanaensis ATCC 14672] gi|291437730|ref|ZP_06577120.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340625|gb|EFE67581.1| two-component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 241 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + V G ++ L+ F + LT+RE Sbjct: 126 GARGYVTKTITGADLIDSVFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 185 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 186 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 241 >gi|258516415|ref|YP_003192637.1| two component transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257780120|gb|ACV64014.1| two component transcriptional regulator, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 223 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 36/66 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + NL++RE L+L +++ EIA L +S+ TV ++ + KL NR QAI + Sbjct: 154 ESCENLSKREMEILKLMSQNHSNTEIAGMLYISLPTVKTHVSNILRKLGQQNRAQAILYS 213 Query: 229 IRFGYI 234 I G I Sbjct: 214 IATGLI 219 >gi|163787697|ref|ZP_02182144.1| two-component response regulator [Flavobacteriales bacterium ALC-1] gi|159877585|gb|EDP71642.1| two-component response regulator [Flavobacteriales bacterium ALC-1] Length = 217 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN------LTER 177 L +GY++ ++ + L + G Y L +RS LT R Sbjct: 101 LKNGVHGYLLKNTDKIELLRALKTVLSGEIYLQKDMSDRLLYQRSKPKAKNGLNIKLTRR 160 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L + T+++I+EKL +S TV + + +K A N + I AI G + Sbjct: 161 EHEVLIAISEELTTQQISEKLFISPKTVETHRSNIILKFGAKNSVGIIKMAIENGLL 217 >gi|121634943|ref|YP_975188.1| putative two-component system response regulator [Neisseria meningitidis FAM18] gi|254805030|ref|YP_003083251.1| putative two-component system response regulator [Neisseria meningitidis alpha14] gi|304387489|ref|ZP_07369678.1| nitrate/nitrite response regulator protein NarL [Neisseria meningitidis ATCC 13091] gi|120866649|emb|CAM10400.1| putative two-component system response regulator [Neisseria meningitidis FAM18] gi|254668572|emb|CBA06069.1| putative two-component system response regulator [Neisseria meningitidis alpha14] gi|254670104|emb|CBA05041.1| putative two-component system response regulator [Neisseria meningitidis alpha153] gi|304338376|gb|EFM04497.1| nitrate/nitrite response regulator protein NarL [Neisseria meningitidis ATCC 13091] gi|325132566|gb|EGC55259.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis M6190] gi|325138339|gb|EGC60908.1| DNA-binding response regulator, LuxR family [Neisseria meningitidis ES14902] Length = 218 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF-----KKRSSAARNLTERE 178 GY++ L + A G ++ ++ + + A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQALSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 LEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|239942897|ref|ZP_04694834.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 224 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN-----LT 175 L +G+++ + L N V G Y +V + + +A + LT Sbjct: 100 LEEGADGFLLKADDPRELLNGVRAVGAGGAYLSPRVAGRVIAGMRAHRAAHPHRPLERLT 159 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE L G G ++ EIA +L L TV A++ + KL NR++A A G + Sbjct: 160 GREREVLAGIGTGLSNAEIAGRLHLVEGTVKAHVSAVLAKLGVRNRVEAAIAAHEAGLLA 219 >gi|212640439|ref|YP_002316959.1| NarL family DNA-binding response regulator [Anoxybacillus flavithermus WK1] gi|212561919|gb|ACJ34974.1| DNA-binding response regulator, NarL family (REC-HTH domains) [Anoxybacillus flavithermus WK1] Length = 213 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 9/116 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTERE 178 YV+ SEF + + + +++ +F +L KK +LT+ E Sbjct: 100 AGAIDYVVK-SEFHEIIDAIRAAYENRSPIRPTIAHKIRKEFCKLRKKEQMTC-SLTKTE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 S L+L GYT +EIA L +S+ TV ++ KL A N A+ KA G++ Sbjct: 158 ISILKLIDQGYTQKEIANHLVISIQTVKNHVSRILKKLSAKNSKHAVCKAREMGFL 213 >gi|145295107|ref|YP_001137928.1| hypothetical protein cgR_1050 [Corynebacterium glutamicum R] gi|140845027|dbj|BAF54026.1| hypothetical protein [Corynebacterium glutamicum R] Length = 203 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ TS A + H + + + S+ LT RE L+ Sbjct: 96 LAAGVLGFLPKTSTADEFATAIRTV-HAGRRYIDPELAAMT--ISAGESPLTNREEEVLE 152 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG G ++EEIA L+ T YL A K+ A NR +A +A G++ Sbjct: 153 LAGQGLSAEEIAVAAHLAPGTTRNYLSQAMTKVGAQNRFEAFTRARELGWL 203 >gi|261823621|ref|YP_003261727.1| LuxR family transcriptional regulator [Pectobacterium wasabiae WPP163] gi|2495420|sp|Q47189|EXPR_PECCC RecName: Full=Transcriptional activator protein expR gi|599736|emb|CAA56646.1| expR [Pectobacterium carotovorum] gi|261607634|gb|ACX90120.1| transcriptional regulator, LuxR family [Pectobacterium wasabiae WPP163] Length = 245 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 71/199 (35%), Gaps = 17/199 (8%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS-IQEETVIESSGQLSVRLE 109 I + N+ + +I + D + + + P W + T ++ S ++ E Sbjct: 44 ILIISNHHDEWREIYQANNYQHIDPVVIAALNKITPFPWDEDLLVSTQLKMSKIFNLSRE 103 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-------------EVIIEAHGACYQV 156 + G F + + + + ++N ++ H + Sbjct: 104 HNI--TNGYTFVLHDHSNNLVMLSIMIDESNVSNIDDVIESNKDKLQMTLMTIHAETISL 161 Query: 157 ITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + S +++ ++RE L A G T +EIA L + TV ++G+ K Sbjct: 162 YREMIRNKEDERSNDKDIFSQRENEILYWASMGKTYQEIALILDIKTGTVKFHIGNVVKK 221 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +N AI I I Sbjct: 222 LGVLNAKHAIRLGIELQLI 240 >gi|320532007|ref|ZP_08032900.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320135771|gb|EFW27826.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 203 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ + LA+ + H + + + + LT+RE L A Sbjct: 98 AGAVGFIVKDTPPEALADAIRKV-HAGLRVIDPELAQ--ESVLLGPNPLTDREKEVLLAA 154 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA +L L TV YL SA K A NR +A A G++ Sbjct: 155 ATGADAREIATRLSLGEGTVRNYLSSAIAKTHARNRTEAARTAETNGWL 203 >gi|29654353|ref|NP_820045.1| LuxR family DNA-binding response regulator [Coxiella burnetii RSA 493] gi|161830925|ref|YP_001596685.1| LuxR family transcriptional regulator [Coxiella burnetii RSA 331] gi|29541620|gb|AAO90559.1| response regulator [Coxiella burnetii RSA 493] gi|161762792|gb|ABX78434.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 331] Length = 214 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 6/121 (4%) Query: 120 FPVRL-GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAA---RN 173 P+RL G++ +S+ L + G Y I + L L K ++A + Sbjct: 89 LPMRLLEVGVRGFITKSSDTTELEQAIRAVYKGQRYISSAIANRLALSKTTTAATCPFKK 148 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L L G +E IA++L ++ TVN++ KL N ++ I A+++G Sbjct: 149 LSDREMEVLLLLAKGKKAEAIAKQLHITGKTVNSHRYRIFEKLGVKNDVELIKLAVQYGL 208 Query: 234 I 234 + Sbjct: 209 V 209 >gi|300859067|ref|YP_003784050.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|300686521|gb|ADK29443.1| two-component system transcriptional regulatory protein [Corynebacterium pseudotuberculosis FRC41] gi|302331322|gb|ADL21516.1| Two component transcriptional regulator, LuxR family and REC superfamily [Corynebacterium pseudotuberculosis 1002] Length = 208 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 53/115 (46%), Gaps = 5/115 (4%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR--SSAARNLTER 177 L + GY++ + +L + G +V++ L+ K SS+ LT R Sbjct: 90 TLEYGARGYLLKDAGPELLVEAIRSAYRGDVLISPEVLSLLLDRRSKPNTSSSDLPLTCR 149 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E +L G T++EIA +L +S+ TV ++ +LD NR++ A R G Sbjct: 150 ELEVARLIAYGRTNQEIATELFISLSTVKTHVARIQERLDVRNRVEIAAALWRSG 204 >gi|297161527|gb|ADI11239.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 224 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE--------LFKKRSSAARNLT 175 L +G+++ + L V + A + + L+ Sbjct: 103 LRAGASGFLLKRARADELVQAVRLVARSDSLLFPAAVRALAAAYATGRDGQAQALRDRLS 162 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L G ++ EIA++L ++ TV ++ + KL +R QA+ A G++ Sbjct: 163 EREAEVLRLMTTGLSNAEIADRLTVAPATVKTHVATVLAKLGVRDRTQAVIAAYECGFV 221 >gi|223937115|ref|ZP_03629022.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223894137|gb|EEF60591.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 207 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 6/114 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKR---SSAARNLTER 177 L NGY++ + L + + G + + F+K S +L+ R Sbjct: 94 LSAGANGYILKRAAPAKLLEAIRDVSAGGSAMSSSIARKVVASFQKSAPVSPTEAHLSPR 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E + L G T + IA LG+S+ T+ +L KL +R +A+AK +R Sbjct: 154 EQNVLDCLAKGMTYKAIACDLGISIETIRTHLKRVYQKLHVQSRTEAVAKYMRR 207 >gi|37523606|ref|NP_926983.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] gi|35214611|dbj|BAC91978.1| LuxR family transcriptional regulatory protein [Gloeobacter violaceus PCC 7421] Length = 90 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 42/66 (63%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 ++ +L++RE L+L G+T+E+IAE L +S TV+ ++ + K NR++ + A+ Sbjct: 7 SSESLSDREMQILELVAQGHTNEDIAEVLEISKRTVDNHVSNILQKTKTKNRVELVRWAL 66 Query: 230 RFGYIC 235 ++G +C Sbjct: 67 QWGKVC 72 >gi|307328434|ref|ZP_07607610.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886007|gb|EFN17017.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 234 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 42/113 (37%), Gaps = 10/113 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF----------KKRSSAARNLT 175 GYV+ + L + V A G L + R L+ Sbjct: 109 AGAAGYVLKQIKGSDLVSAVRTVASGQSMLDPATTARLMSTLRGDTAPQEPRDEVLAGLS 168 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 RE L L GDG T+ +I ++L LS TV ++ KL RIQA A Sbjct: 169 PREREILVLIGDGLTNRQIGKRLFLSEKTVKNHISRLLAKLGVERRIQAAVLA 221 >gi|295394642|ref|ZP_06804861.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] gi|294972535|gb|EFG48391.1| two component system response regulator [Brevibacterium mcbrellneri ATCC 49030] Length = 228 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 8/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--------ACYQVITDFLELFKKRSSAARNLTER 177 NGY+I TS+ + ++ A G A + E + + LTER Sbjct: 103 AGANGYLIKTSDISQIRAAILSIASGTAVFSPDAAGFSRAVVANEAPGQTPADLYGLTER 162 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 E + L G ++ EIA LG+S TV ++ S K + +R++ + +A G Sbjct: 163 EEAILTQLCRGQSNYEIARFLGISEGTVKVHITSIMKKANVRSRLELVVQAFNSG 217 >gi|239940359|ref|ZP_04692296.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291443791|ref|ZP_06583181.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|291346738|gb|EFE73642.1| two-component system response regulator [Streptomyces roseosporus NRRL 15998] Length = 220 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--------ARNLT 175 L G+++ + L V + A G L + ++ LT Sbjct: 99 LHAGAAGFLLKRAAAEELVQAVRLVACGDSLLYPAAVRTLAAEHAARRPARAPAWVARLT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +RE L+L G T+ EIA +L + T ++ + K A +R QA+ A G+I Sbjct: 159 DREADVLRLMAAGLTNAEIAGRLSVGPATAKTHVAAVLAKTGARDRTQAVIAAYESGFIT 218 >gi|226357726|ref|YP_002787465.1| transcriptional regulator, LuxR family, sensory transduction protein liaR [Deinococcus deserti VCD115] gi|226319968|gb|ACO47961.1| putative transcriptional regulator, LuxR family, putative sensory transduction protein liaR [Deinococcus deserti VCD115] Length = 210 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 4/114 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETS 180 L + Y + ++ +L + A G+ + QV L + L+ RE Sbjct: 98 LASGADAYCLKSARPDLLLLAIRAAAVGSAFLDPQVAHHVLGAMRT-PGVPVELSARELE 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L DG + EI +L +SV +V ++ KL A +R QA KA+R G + Sbjct: 157 VLRLIADGLGNREIGMQLEISVSSVKLHVQDLLEKLQASDRTQAAVKALRQGLL 210 >gi|198277378|ref|ZP_03209909.1| hypothetical protein BACPLE_03590 [Bacteroides plebeius DSM 17135] gi|198269876|gb|EDY94146.1| hypothetical protein BACPLE_03590 [Bacteroides plebeius DSM 17135] Length = 215 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 2/108 (1%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +G ++ +++ L + G Y + L + LT RE LQ Sbjct: 103 SGAILKSADINELTLAIQTILKGGQYLCKRFKSILNRMQTEEQIKEQLTLREMEVLQAIA 162 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G+ + EIAE L +S +T+ + S KL+A N + + KAI G I Sbjct: 163 KGFNTREIAELLHVSNNTIETHRKSLMSKLEARNAVDLVLKAINLGII 210 >gi|196234323|ref|ZP_03133152.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196221590|gb|EDY16131.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 209 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 3/110 (2%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY+ + E L + A G Y +L RS+ +LT+RET L Sbjct: 100 DAGVVGYLPKSVEREQLLTAIHRLAEGGEYFAPEIEAKL---RSTNRVSLTKRETEVLTQ 156 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EI LG++ TV +L KL ++R QA A++ G + Sbjct: 157 IVKGRSNKEIGYDLGIAEPTVRLHLTHLFKKLHVMDRTQAAMVAVQRGLV 206 >gi|118471878|ref|YP_884521.1| LuxR family transcriptional regulator [Mycobacterium smegmatis str. MC2 155] gi|118173165|gb|ABK74061.1| DNA-binding response regulator, LuxR family protein [Mycobacterium smegmatis str. MC2 155] Length = 216 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERET 179 L G++ S L + V+ A G + E+ ++ L+ RE Sbjct: 101 LQQGAAGFLSKESTRSELVSAVLSCAKGRDVITPHLAAGLAGEIRRRNEPDVPVLSPRER 160 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G + +A++L L+ TV ++ KL +R A+A+A+R + Sbjct: 161 EVLNLIAQGRSIPAMAKELYLAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRRHLL 215 >gi|297154246|gb|ADI03958.1| putative two-component regulator [Streptomyces bingchenggensis BCW-1] Length = 222 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 14/125 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR-----------SS 169 L +G+++ + L + A G + L+ + R Sbjct: 94 LRAGASGFLLKDARPEELVAGIHAVATGDAVVAPSLTRRLLDAYAHRVLAPADAHAPADP 153 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 R L++RE L G G+T+ EIAE+L L+ TV ++G K+ A +RIQA+ A Sbjct: 154 RLRTLSDREREVLVAIGQGWTNTEIAERLVLTESTVKKHVGRVLAKIGARDRIQAVIMAY 213 Query: 230 RFGYI 234 G + Sbjct: 214 DAGLV 218 >gi|296877409|ref|ZP_06901446.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] gi|296431570|gb|EFH17380.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 15912] Length = 199 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + YV+ +++ H EL + + L+ +E + L+ Sbjct: 93 LKAGVDAYVLK----ERRITDLMATLHAVLAGQKEYSPELMEGILTHPNPLSPQEKAVLK 148 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS T+ Y+ + KLDA NR +A A G++ Sbjct: 149 EVAKGASNQEIADRLFLSNGTIRNYMSAILTKLDAENRTEAAKIAQEKGWL 199 >gi|312195201|ref|YP_004015262.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311226537|gb|ADP79392.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 232 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 1/112 (0%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY-QVITDFLELFKKRSSAARNLTERETSCLQ 183 G GY++ ++ L + + H ++ + + + L+ RE L+ Sbjct: 101 GLGIRGYLLKSATRHELMSAIRGACHDDTRVSLVVSPESVTLAQVRGEQPLSRRERDVLE 160 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 LA + T+ +IA +L L+ TV ++ + KL A +RI AI KA+ I Sbjct: 161 LAAEAMTNIQIASRLSLTEATVKRHMHNIFGKLHATSRIDAINKAVAARLIT 212 >gi|312198139|ref|YP_004018200.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311229475|gb|ADP82330.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 227 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 48/123 (39%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE----LFKKRSSAAR 172 L +GY+ L + + A G A ++ FL R A Sbjct: 99 LRAGASGYLGKGVAPNTLLDAIRTVAAGESLLSPTATTALVRRFLASPQPRLDARLPAMT 158 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G ++EEIAE L +S T ++ A K+ A +R Q + A G Sbjct: 159 DLTAREREITVLVARGLSNEEIAELLVISPATAKTHVNRAMTKVHARDRAQLVVFAYENG 218 Query: 233 YIC 235 + Sbjct: 219 LMT 221 >gi|251798920|ref|YP_003013651.1| LuxR family transcriptional regulator [Paenibacillus sp. JDR-2] gi|247546546|gb|ACT03565.1| two component transcriptional regulator, LuxR family [Paenibacillus sp. JDR-2] Length = 225 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 17/121 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF----------------KKR 167 L GY++ E LA + G Q+ D R Sbjct: 95 LQTGAIGYMLKDVEPDQLAEAIRSAYKGNI-QLHPDISRALLSRPEPEPRPEPVIQHSNR 153 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L+L G ++++IA+ L ++ TV ++ S KLD +R QA Sbjct: 154 DKSLEALTPRELEVLELLTKGLSNKDIAQTLIVAEKTVKTHVSSILSKLDLSDRTQAALF 213 Query: 228 A 228 A Sbjct: 214 A 214 >gi|294630991|ref|ZP_06709551.1| two-component system response regulator [Streptomyces sp. e14] gi|292834324|gb|EFF92673.1| two-component system response regulator [Streptomyces sp. e14] Length = 244 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + + G ++ L+ F + LT+RE Sbjct: 129 GARGYVTKTITGADLVDSIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 188 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 189 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 244 >gi|290963094|ref|YP_003494276.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260652620|emb|CBG75753.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------- 173 L G+++ +E LA V A G +++ AA Sbjct: 89 LRSGAAGFLLKDTEPDQLAQVVRTLAAGGVVMSPKASRAVWQSHPRAATVDDDEHVARFG 148 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LTERE L L +G ++ EI + LS TV ++ + KL R++A A R G Sbjct: 149 LLTERERQVLVLVAEGLSNAEIGTVVHLSEGTVKDHVSAILGKLGVAGRVRAALLAQRAG 208 Query: 233 YI 234 + Sbjct: 209 LL 210 >gi|153003783|ref|YP_001378108.1| two component LuxR family transcriptional regulator [Anaeromyxobacter sp. Fw109-5] gi|152027356|gb|ABS25124.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. Fw109-5] Length = 202 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 36/66 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 AA LT RE L L +G ++ IA +LG+S HT ++ + KL +R +AI +A Sbjct: 136 AAEGLTRREREVLALLAEGLANKAIAARLGISEHTAKFHVNAILGKLGVESRAEAIVRAA 195 Query: 230 RFGYIC 235 R G + Sbjct: 196 RLGLVA 201 >gi|15896845|ref|NP_350194.1| regulatory protein [Clostridium acetobutylicum ATCC 824] gi|15026710|gb|AAK81534.1|AE007857_7 Regulatory protein related to malT, positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Clostridium acetobutylicum ATCC 824] gi|325511019|gb|ADZ22655.1| Positive regulator of mal regulon (ATPase and HTH-type DNA-binding domain) [Clostridium acetobutylicum EA 2018] Length = 862 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 35/61 (57%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L++ DG +++EI L +S+ TV ++ + KL NR+QA+ KA Sbjct: 800 LSERELEVLEVLCDGNSNKEIGSILNISLSTVKTHMINIYSKLHVSNRLQAVEKAKELNL 859 Query: 234 I 234 + Sbjct: 860 L 860 >gi|320158939|ref|YP_004191317.1| nitrate/nitrite response regulator protein [Vibrio vulnificus MO6-24/O] gi|319934251|gb|ADV89114.1| nitrate/nitrite response regulator protein [Vibrio vulnificus MO6-24/O] Length = 204 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 4/104 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L E++ +AH A V+ +L ++ + LTERE L Sbjct: 92 AGADGYLLKDTEPDELV-ELLEKAHLGDKAYSSVVAKYLLQREENTDVFDELTERERQIL 150 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G+ +++IA++L +S TV ++ S KL +R A Sbjct: 151 QEVARGFRNKQIADRLFISESTVKVHMKSLLKKLKVPSRTAATV 194 >gi|323357168|ref|YP_004223564.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323273539|dbj|BAJ73684.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 200 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 LG +G++ + +A + A G Y D S LT+RE L+ Sbjct: 93 LGAGVDGFLPKSRPADDVAAVIREVAAGRRY---VDPEIAADALSDERSPLTDRELDVLR 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EIA L LS TV ++ S KL +R QA A G+I Sbjct: 150 AGARGETVAEIAASLHLSAGTVRNHVSSVLGKLGLASRQQATIHARERGWI 200 >gi|300785449|ref|YP_003765740.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299794963|gb|ADJ45338.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 234 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 52/136 (38%), Gaps = 28/136 (20%) Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN----- 173 +R G G+++ + L + + A G + + F R AR Sbjct: 94 LRGGAG--GFLLKDTPPADLLAAIRVIASGDALLAPSITRRLIAEFAARPEPARPGTAGA 151 Query: 174 ------------------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 +T+RE L L +G T+ EIA +L ++ T ++G+ K Sbjct: 152 PGPGFAETGAAGPDPLASITDRERQVLALVAEGLTNAEIARRLHIAPGTAKTHVGNLLTK 211 Query: 216 LDAVNRIQAIAKAIRF 231 L+A +R+ + A R Sbjct: 212 LNARDRVHLVIHAYRA 227 >gi|297559758|ref|YP_003678732.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844206|gb|ADH66226.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 220 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDF----LELFKKRSSAAR 172 LG +G+++ + L V A G Y QVI F + Sbjct: 94 LGGGASGFLLKAGDPRELIAGVHAVADGGAYLSPQVARQVIARFGGPRAAREAAAVARVE 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L L G G ++ +IA++L L TV +Y+ + +L+ NR+QA A G Sbjct: 154 ELTQREREVLALVGAGLSNADIADRLFLVEGTVKSYVSAILNRLEMRNRVQAAILAHEAG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|328884518|emb|CCA57757.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 236 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + + G ++ L+ F + LT+RE Sbjct: 121 GARGYVTKTITGTDLVDSIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDMDRLTQRE 180 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 181 REVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 236 >gi|134026355|dbj|BAF49408.1| response regulator [Streptomyces halstedii] Length = 217 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 51/124 (41%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L G+++ ++ L V A G ++I +F R + + Sbjct: 94 LRAGAAGFLLKDTDAHDLIEAVRTVARGEGLIAPAVTRRLIAEFAGTAPVRPARTPDPSV 153 Query: 174 ---LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G+G ++ EIA +L ++ TV ++ KL+ +R+QA A Sbjct: 154 LDALTRREREVLGCLGEGLSNAEIAVRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQE 213 Query: 231 FGYI 234 G + Sbjct: 214 LGVL 217 >gi|88860703|ref|ZP_01135340.1| DNA-binding response regulator, LuxR family protein [Pseudoalteromonas tunicata D2] gi|88817298|gb|EAR27116.1| DNA-binding response regulator, LuxR family protein [Pseudoalteromonas tunicata D2] Length = 198 Score = 92.0 bits (227), Expect = 6e-17, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 4/110 (3%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G+++ + L + + G +VI EL L+++E L+L Sbjct: 93 DAGVGGFLLKDAPVEELIHAINQVMAGK--RVIDS--ELLLNSLGDQDPLSDKERQALRL 148 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A +G ++ +IA L ++ T YL A KL+A+NRI A A + G++ Sbjct: 149 AAEGKSTHDIAAALYIAEGTARNYLSEAISKLNAMNRIDAARIARQKGWL 198 >gi|332669983|ref|YP_004452991.1| LuxR family transcriptional regulator [Cellulomonas fimi ATCC 484] gi|332339021|gb|AEE45604.1| two component transcriptional regulator, LuxR family [Cellulomonas fimi ATCC 484] Length = 215 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 42/115 (36%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 GY++ ++ + V A G + + L LT+RE Sbjct: 98 AGARGYLVKSAPPDAVERAVRAVAAGEMILSPAVAQRAMAYVLGGRTATRVPFPQLTDRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L G + I+ +L LS TV ++ + KL +R AI +A G Sbjct: 158 REVLDLVAAGRDNAVISRRLSLSPKTVRNHVANVLTKLSLPDRSAAILRAREEGL 212 >gi|302535729|ref|ZP_07288071.1| luxR family two component system response regulator [Streptomyces sp. C] gi|302444624|gb|EFL16440.1| luxR family two component system response regulator [Streptomyces sp. C] Length = 203 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + T LA E+I H V + S+ LT RE L+ Sbjct: 96 LAAGVRAFAPKTVSAQRLA-ELIRTVHAGGRYVDPELAA--DAISAGDSPLTAREAEVLE 152 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG EIAE+ LS TV YL SA KL A NR A+ A + G++ Sbjct: 153 LAADGAPIAEIAERASLSQGTVRNYLSSAATKLGAENRHTAVRLARQRGWV 203 >gi|261401222|ref|ZP_05987347.1| nitrate/nitrite response regulator protein NarL [Neisseria lactamica ATCC 23970] gi|269208805|gb|EEZ75260.1| nitrate/nitrite response regulator protein NarL [Neisseria lactamica ATCC 23970] Length = 218 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSA-----ARNLTERE 178 GY++ L + A G ++ ++ A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAADGDNVFSPEMTAKLVKSLISPQPAQGTQTLSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 MEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|170728910|ref|YP_001762936.1| two component LuxR family transcriptional regulator [Shewanella woodyi ATCC 51908] gi|169814257|gb|ACA88841.1| two component transcriptional regulator, LuxR family [Shewanella woodyi ATCC 51908] Length = 198 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 4/108 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G+++ + L + G +VI L + + L+++E L+LA Sbjct: 95 GAGGFLLKDAPSESLIQGIKQVMAGK--RVIDPELAIMAVGEN--DPLSDKERKALRLAS 150 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G T+ EIA L ++ TV YL AT KL NRI A A + G++ Sbjct: 151 EGKTTSEIAALLFIAEGTVRNYLSEATSKLHGSNRIDAARIAKQKGWL 198 >gi|331669588|ref|ZP_08370434.1| putative 2-component transcriptional regulator [Escherichia coli TA271] gi|331063256|gb|EGI35169.1| putative 2-component transcriptional regulator [Escherichia coli TA271] Length = 148 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 50/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L G V TS L + ++G Y V D E R S+ LT RE+ Sbjct: 35 LEAGAKGCVWKTSHPAKLNRAIDSISNGYTYFDSVHMD-CEKISSRYSSDNQLTNRESEI 93 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LQL DG T++EIA L LS V + + KLD + I+ I A+R G Sbjct: 94 LQLIADGKTNKEIANFLQLSRKKVETHRLNIMKKLDVHSGIELIKTALRMG 144 >gi|323491776|ref|ZP_08096951.1| response regulator [Vibrio brasiliensis LMG 20546] gi|323313911|gb|EGA67000.1| response regulator [Vibrio brasiliensis LMG 20546] Length = 210 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 51/110 (46%), Gaps = 3/110 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ +E L + + G A + + +LE + + LT+RE L+ Sbjct: 98 AGADGYLLKDTEPDELVELLRVSLQGNKAYSREVAKYLEDRENSTDIFDELTDRELQILK 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFG 232 G+ +++IA+ L +S TV ++ S KL +R A + R+G Sbjct: 158 EVAKGFRNKQIADTLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERYG 207 >gi|332531975|ref|ZP_08407859.1| Two-component system regulatory protein [Pseudoalteromonas haloplanktis ANT/505] gi|332038602|gb|EGI75045.1| Two-component system regulatory protein [Pseudoalteromonas haloplanktis ANT/505] Length = 204 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ + L N + G Q + D EL A LT++E L+ Sbjct: 98 LTTGVKGFILKEAPSEELINALKKVMQG---QKVID-PELAINALDDADPLTDKERKALK 153 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA DG + +IA++L +S T YL A KL+A NRI A A + G++ Sbjct: 154 LASDGLKTSDIAKQLFISEGTTRNYLSDAIAKLNATNRIDAARIAKQKGWL 204 >gi|328885076|emb|CCA58315.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 217 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 14/123 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L +G+++ ++ L V A G V + F S AR Sbjct: 94 LRAGASGFLLKNADARELIEAVRTVARGEGLIAPAVTRRLIAEFAAPSRPARPAGGTDPG 153 Query: 174 ----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L G+G ++ EIA +L ++ TV ++ KL+ +R+QA A Sbjct: 154 VLDALTPRERQVLSKLGEGLSNAEIAVRLDMAEATVKTHVSKVLGKLELRSRVQAAVLAQ 213 Query: 230 RFG 232 G Sbjct: 214 ELG 216 >gi|33636170|emb|CAE45182.1| putative ExpR protein [Pectobacterium atrosepticum] Length = 245 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 69/199 (34%), Gaps = 17/199 (8%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS-IQEETVIESSGQLSVRLE 109 I + N+ + +I D + + + P W + T ++ S ++ E Sbjct: 44 ILIISNHHDEWREIYQANNYQQIDPVVIAALNKITPFPWDEDLLVSTQLKMSKIFNLSRE 103 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-------------EVIIEAHGACYQV 156 + G F + + + + + N ++ H + Sbjct: 104 HNI--TNGYTFVLHDHNNNLVMLSIMIDESNVNNIDDVIESNKDKLQMTLMNIHAETISL 161 Query: 157 ITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + S +++ ++RE L A G T +EIA L + TV ++G+ K Sbjct: 162 YREMIRSKEDERSNDKDIFSQRENEILYWASMGKTYQEIALILDIKTGTVKFHIGNVVKK 221 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +N AI I I Sbjct: 222 LGVLNAKHAIRLGIELQLI 240 >gi|16331237|ref|NP_441965.1| response regulator like-protein [Synechocystis sp. PCC 6803] gi|1001413|dbj|BAA10035.1| response regulator like protein [Synechocystis sp. PCC 6803] Length = 89 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 40/66 (60%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +L++RE L L G T++E++E+L +S TV+ ++ + K + NR++ + A+ Sbjct: 8 PPASLSDRELEILDLVAIGLTNQEVSERLEISKRTVDNHVSNILTKTNTENRVELVRWAL 67 Query: 230 RFGYIC 235 ++G +C Sbjct: 68 QWGKVC 73 >gi|309378607|emb|CBX22785.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 218 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSA-----ARNLTERE 178 GY++ L + A G ++ ++ A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAAEGDNVFSPEMTAKLVKSLISPQPAQGTQTLSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AIR Sbjct: 158 MEILGYLAAGHSNKIIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAIRH 210 >gi|329944887|ref|ZP_08292914.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328529698|gb|EGF56594.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 234 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 31/149 (20%), Positives = 68/149 (45%), Gaps = 9/149 (6%) Query: 90 QSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEA 149 SI ++ + + +G + +A +R N + TS +++++ + A Sbjct: 91 DSIVDDAMALGVRGFVAKEDGA----SSLAGAIRQAVAGNLVLSPTSS-AIISDQARLWA 145 Query: 150 HGACYQVITDFLELFKKRSSAARN----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 +G+ + + ++S++ L+ERE L L D T+++IA +L LS TV Sbjct: 146 NGSAQPSESTSKQTQTQQSASPLPHGIPLSEREREVLTLVVDAKTNKQIATRLRLSEATV 205 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ + KL +R+ A+ A++ + Sbjct: 206 KTHVSAIIAKLGVQDRVGAVVYALQHNLV 234 >gi|308273005|emb|CBX29609.1| hypothetical protein N47_J05900 [uncultured Desulfobacterium sp.] Length = 229 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFK--KRSSAARNLTER 177 GY + +S L + G Y +++ ++E K K+ S+ LT+R Sbjct: 110 GAEGYCLKSSSQEELLIAINAVLSGKKYVCPEISGKILEGYIEGQKTIKQDSSWDMLTQR 169 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L G+GY + EIA+ L +SV TV + + KLD A +I G + Sbjct: 170 EKEVLKLVGEGYKNLEIADYLCISVKTVEKHRANIMEKLDLHTASALTAYSIERGLV 226 >gi|297161064|gb|ADI10776.1| two-component system regulator [Streptomyces bingchenggensis BCW-1] Length = 226 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 10/122 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L G ++ + + A G V+ + + R++A Sbjct: 97 LRVGAAGILLKDTSPQKTIASISAVATGDMAFSPSVMERLINAYTYRATATETAGSTLAM 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RET L+ G ++ IA +L +S TV +L A KL +R QA+A G Sbjct: 157 LTMRETEVLRHVAKGRSNSAIARELKISEATVKTHLNRAMTKLGITSRAQAVALGYECGL 216 Query: 234 IC 235 + Sbjct: 217 VV 218 >gi|260904804|ref|ZP_05913126.1| response regulatory protein [Brevibacterium linens BL2] Length = 206 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 48/111 (43%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ ++ + + G Y ++ + LT RE ++ Sbjct: 96 LNAGAAGYLLKDINPEDISTAIEKASRGETYLPPEISSKVVAAMRNPGPKLTRRERDVVK 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ +IA++L ++ TV ++L + KL +R +AI A G + Sbjct: 156 LLATGASNAQIAQELFVTEATVKSHLVNVFTKLGVESRSRAIRVAEDQGLV 206 >gi|282863904|ref|ZP_06272961.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560982|gb|EFB66527.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 231 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 11/117 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA----R 172 L +G+++ S + L V A G ++I L + S R Sbjct: 111 LTAGASGFLLKNSSYEQLTEAVRAAAAGHSALSPAVTRRIIEGHLSGRPRPSDQELARLR 170 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LTERE L+L DG ++ EIA +L +S+HTV ++ +K +R QA A Sbjct: 171 DLTEREVDVLRLIRDGLSNAEIAGELVVSLHTVKTHVSRVLMKTGCQSRAQAAVLAR 227 >gi|256379888|ref|YP_003103548.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924191|gb|ACU39702.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 218 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA----R 172 L G+++ S L V G Y +V+ ++ + R A + Sbjct: 94 LSEGAAGFLLKDSAPEELLRAVRAVHAGEAYLSPMVTSRVVGMVAQVGQPRRQEAMRQVQ 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L+L G G ++ ++ ++L +S TV Y+ KL NR+QA A G Sbjct: 154 RLTDREVEVLELLGLGMSNADVGQRLHMSEATVKTYVSRLLAKLGLTNRVQAALLARDAG 213 Query: 233 Y 233 Sbjct: 214 L 214 >gi|289811480|ref|ZP_06542109.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 115 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 5/110 (4%) Query: 130 GYVIFTSEFLMLA----NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQL 184 G++ F+ L + +EV + + ++ L A ++RE L+ Sbjct: 6 GFLSFSRSSLRCSSFTYDEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKREKEILKW 65 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G TS EIA L +S +TVN + + K +A N+ Q A G I Sbjct: 66 TAEGKTSSEIAIILSISENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 115 >gi|254464244|ref|ZP_05077655.1| two component transcriptional regulator, LuxR family [Rhodobacterales bacterium Y4I] gi|206685152|gb|EDZ45634.1| two component transcriptional regulator, LuxR family [Rhodobacterales bacterium Y4I] Length = 238 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 46/111 (41%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCL 182 L G++ T L N V + G Y + E + A+ L+ RE L Sbjct: 127 LDAGAIGFIPKTMGAQSLLNAVRFMSAGEIYVPVDLMREEAAASTHPLAKKLSPRELEVL 186 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G +++EIA +L L T+ ++ + KLDA NR QA A G Sbjct: 187 NGLSKGLSNKEIARELELQEVTIKLHVRTLCRKLDAKNRTQAALCAKEAGL 237 >gi|220916020|ref|YP_002491324.1| transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] gi|219953874|gb|ACL64258.1| transcriptional regulator, LuxR family [Anaeromyxobacter dehalogenans 2CP-1] Length = 208 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 38/73 (52%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 L + A LT RE L L +G ++ IA +LG+S HT ++ + KL A +R Sbjct: 135 LRAPAAEAGGPLTPREREVLALVAEGLGNKAIAGRLGISEHTAKFHVNAILGKLGAGSRA 194 Query: 223 QAIAKAIRFGYIC 235 +AI +A R G + Sbjct: 195 EAIVRAARLGLVV 207 >gi|311899330|dbj|BAJ31738.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 223 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L +G++ + L + V + A G +I FL AA Sbjct: 97 LRAGASGFLGKGIDPAELLDAVRLVAAGDALLSPAATKALIGRFLAQPDPVRRAALPRLD 156 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G ++++IAE+L ++ T ++ A KL A +R Q + A G Sbjct: 157 VLTAREQQVVALVAAGLSNDDIAERLFVTPLTAKTHVNRAMTKLGARDRAQLVVIAYETG 216 Query: 233 YI 234 + Sbjct: 217 LV 218 >gi|300775044|ref|ZP_07084907.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] gi|300506859|gb|EFK37994.1| LuxR family DNA-binding response regulator [Chryseobacterium gleum ATCC 35910] Length = 210 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 6/110 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR---NLTER 177 L GY++ + + + G + + L+ F+ + LTER Sbjct: 95 LKAGAMGYLVKGESMDKILSSIRDVYSGGAPMSFSIARRVLKHFENKLPEVEGFDELTER 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 E L+L G +EIA+K +S+ TV ++G+ KL N+++A+ K Sbjct: 155 EKEILELLSQGLLYKEIADKKFISIDTVKKHVGNIYRKLHVNNKVEAVNK 204 >gi|224369897|ref|YP_002604061.1| two-component response regulator protein [Desulfobacterium autotrophicum HRM2] gi|223692614|gb|ACN15897.1| two-component response regulator protein [Desulfobacterium autotrophicum HRM2] Length = 218 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 8/118 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--------ARNLTER 177 G+++ TS L +++ A G Y + + + + LT R Sbjct: 100 AGAKGFLLKTSSLEDLHTAILMVASGKSYLCPEALNIMMEDIQTPGDTKLLCPLQRLTLR 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E +QL +GYTS+EI+EKL +S TV+ + + KL A++ G I Sbjct: 160 ERGVIQLIAEGYTSQEISEKLNISKRTVDVHRTNTMNKLKIHTIAGLTRFAVKEGLIT 217 >gi|326624070|gb|EGE30415.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 198 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A+G + ++L E F + LTERE Sbjct: 83 DAGADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVNEYLRERERFGAQEDPFSILTEREL 142 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 143 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 187 >gi|288904269|ref|YP_003429490.1| two-component response regulator [Streptococcus gallolyticus UCN34] gi|306830297|ref|ZP_07463468.1| possible response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|288730994|emb|CBI12538.1| putative two-component response regulator [Streptococcus gallolyticus UCN34] gi|304427544|gb|EFM30645.1| possible response regulator [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 207 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 4/112 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCL 182 GY++ + + N + Y I+ + ++ +TE++ L Sbjct: 96 GVRGYLLKDEDPTDIVNHIQKLLADDSYIAISSEVLTASFQHRQNEENVPTITEQQKQLL 155 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Q+ DG T++EIA +L ++ TV YL NR QAIA AIR I Sbjct: 156 QMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAYAIRHNLI 207 >gi|146308673|ref|YP_001189138.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] gi|145576874|gb|ABP86406.1| regulatory protein, LuxR [Pseudomonas mendocina ymp] Length = 914 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ + S L+ RE + LQL G +++EI+E+L +S+HTV + KL R Sbjct: 841 DVAPEESGPTEKLSGREMAVLQLIARGCSNQEISERLFISLHTVKTHARHINSKLGVERR 900 Query: 222 IQAIAKAIRFGYI 234 QA+A+A G + Sbjct: 901 TQAVARAKGLGLL 913 >gi|111225726|ref|YP_716520.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111153258|emb|CAJ65009.1| putative two-component system response regulator [Frankia alni ACN14a] Length = 203 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 51/117 (43%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK--RSSAARNLTE 176 +GYV+ ++ L + V A G V+ + + + + LT Sbjct: 83 AGASGYVVKSARPEELVDAVRRTAAGVPVFSAGLAALVLGEMSRAARDVTATPSTPRLTA 142 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+L G ++ + A +LG+S TV ++ + KL NR++ A+R GY Sbjct: 143 REIEVLRLIAKGLSARDAAARLGVSHRTVQNHVHNVLGKLQLRNRVELTRFALREGY 199 >gi|325286932|ref|YP_004262722.1| LuxR family two component transcriptional regulator [Cellulophaga lytica DSM 7489] gi|324322386|gb|ADY29851.1| two component transcriptional regulator, LuxR family [Cellulophaga lytica DSM 7489] Length = 215 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 54/112 (48%), Gaps = 4/112 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLE-LFKKRSSAARNLTERETSCL 182 + +GYV +E L + G Y ++ + + +F + +LT RE L Sbjct: 102 NVDGYVPKNAEKEELLEAIRSIVKGEKYFSSEIKKAYTDAMFASKKEKEISLTNREKEVL 161 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L + YT++EIA++L LS HT+ +Y + KL+ N AI+ G + Sbjct: 162 KLIAEEYTTQEIADELFLSKHTIESYRKNLISKLNVKNLAGLTKHAIKIGLL 213 >gi|239994527|ref|ZP_04715051.1| DNA-binding response regulator, LuxR family protein [Alteromonas macleodii ATCC 27126] Length = 206 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ S+ L + + + G +VI+ L + + L+++E S L+ Sbjct: 100 LSLGVKGFILKESDSDYLIDAIHKVSAGE--KVISTELAIMALDDN--NPLSQKEMSALK 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA +G ++ IA+ L LS TV YL A KLDA NR+ A A + G++ Sbjct: 156 LASEGLKTQGIAQSLFLSEGTVRNYLSEAISKLDATNRVDAARIAKQKGWL 206 >gi|260598854|ref|YP_003211425.1| transcriptional regulator NarP [Cronobacter turicensis z3032] gi|260218031|emb|CBA32732.1| Nitrate/nitrite response regulator protein narP [Cronobacter turicensis z3032] Length = 210 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 47/107 (43%), Gaps = 5/107 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGA-----CYQVITDFLELFKKRSSAARNLTERET 179 +GY++ SE L + A GA Q E ++R++ LT RE Sbjct: 96 DAGADGYLLKDSEPEALLEAIRDGAAGAGVFSEQVQAYLLTREPEEQRNAPFALLTGREL 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LQ G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 156 DVLQEVARGLSNKQIAATLHISEETVKVHIRNLLRKLNVRSRVAATV 202 >gi|222149995|ref|YP_002550952.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] gi|221736977|gb|ACM37940.1| transcriptional regulator LuxR family [Agrobacterium vitis S4] Length = 248 Score = 92.0 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 39/71 (54%) Query: 164 FKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 +++ LTERE CL +G TS+EIA LG+S +T+N Y+ S K R + Sbjct: 178 RSQKADRDFELTERELECLFWIAEGKTSDEIATILGISRNTINNYITSVMRKTATKTRSE 237 Query: 224 AIAKAIRFGYI 234 AIA A+R + Sbjct: 238 AIAYAVRNNLV 248 >gi|302542477|ref|ZP_07294819.1| putative two-component system response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302460095|gb|EFL23188.1| putative two-component system response regulator [Streptomyces himastatinicus ATCC 53653] Length = 225 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 10/119 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLE---LFKKRSSAARN 173 L G+++ S+ L V A G ++I +F S Sbjct: 106 LRAGAAGFLLKDSDAARLVEAVRTVARGEGLIAPAVTRRLIKEFARSGTATTADPSVLAV 165 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G G ++ EIA L ++ TV ++ KL+ +R+QA A G Sbjct: 166 LTPREREVLGCLGRGMSNAEIATHLTMAEATVKTHVSRLLGKLELRSRVQAAVLAQELG 224 >gi|239986838|ref|ZP_04707502.1| two-component system response regulator [Streptomyces roseosporus NRRL 11379] Length = 215 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 47/120 (39%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA--------ARNLT 175 L G+++ + L V + A G L + ++ LT Sbjct: 94 LHAGAAGFLLKRAAAEELVQAVRLVACGDSLLYPAAVRTLAAEHAARRPARAPAWVARLT 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +RE L+L G T+ EIA +L + T ++ + K A +R QA+ A G+I Sbjct: 154 DREADVLRLMAAGLTNAEIAGRLSVGPATAKTHVAAVLAKTGARDRTQAVIAAYESGFIT 213 >gi|256370998|ref|YP_003108822.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] gi|256007582|gb|ACU53149.1| two component transcriptional regulator, LuxR family [Acidimicrobium ferrooxidans DSM 10331] Length = 216 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 9/116 (7%) Query: 124 LGFHKNGYVIFTSEFLMLA---------NEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 L GY++ + L +I A ++ L+ + A L Sbjct: 96 LRAGARGYLLKQASGEELVGMLERAAGGETMIDAALAGRVALLAARLQFGEFWPGAHLGL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T+RE+ L L G ++ +IA++L L TV +L S KL R +AIA A+R Sbjct: 156 TQRESEILDLVVKGLSNRDIAQRLFLGEETVKTHLSSIYRKLKVKGRAEAIAVALR 211 >gi|254383084|ref|ZP_04998438.1| two-component system DNA-binding response regulator [Streptomyces sp. Mg1] gi|194341983|gb|EDX22949.1| two-component system DNA-binding response regulator [Streptomyces sp. Mg1] Length = 235 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + V G ++ L+ F + LT+RE Sbjct: 120 GARGYVTKTITGTDLVDSVFRVQDGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 179 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 180 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 235 >gi|296285195|ref|ZP_06863193.1| LuxR family transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 186 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 52/164 (31%), Gaps = 2/164 (1%) Query: 73 GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV 132 D + ++ W I E + + + + G P L G Sbjct: 11 QDPVRRACDKTIIGFAWDWIDELVPLTRGDRQMLNVGRECGIGNGYTVPRHLPGIGRGTC 70 Query: 133 IFT-SEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQLAGDGYT 190 F L A ++ L L ++ +LT+R+ CL G T Sbjct: 71 TFAVRPERELPRRRFAVAEMIGTLALSCALGLSSEKFDEKVPSLTDRQRECLLWVARGKT 130 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + E A L +S TV +L A + + + A+ G I Sbjct: 131 AAETAMILEISTETVIQHLKMARERYQVHCKQSLVVAALFDGLI 174 >gi|291300164|ref|YP_003511442.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569384|gb|ADD42349.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 219 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAA---RN 173 L G+++ + LA +V A V+ +L +++S+ Sbjct: 93 LHRGAAGFLLKDTAPDHLALQVRTLAANGVVLSPKVTSTVVDGYLASTRRQSADTALIDT 152 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE + L DG ++ +IA +L L V TV ++ + KL+ NR+QA A R G Sbjct: 153 LTDRERAVLVHLADGLSNADIAARLYLGVGTVKDHVSAILAKLEVANRVQAALLAERAGL 212 Query: 234 I 234 + Sbjct: 213 L 213 >gi|255325217|ref|ZP_05366323.1| two-component system response regulator [Corynebacterium tuberculostearicum SK141] gi|311739691|ref|ZP_07713526.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] gi|255297782|gb|EET77093.1| two-component system response regulator [Corynebacterium tuberculostearicum SK141] gi|311305507|gb|EFQ81575.1| two component system response regulator [Corynebacterium pseudogenitalium ATCC 33035] Length = 247 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 23/137 (16%) Query: 122 VRLG--FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN--- 173 V +G+++ E L + G ++ L+ + SA++ Sbjct: 103 VHGAISAGASGFLLKDVEPEELLAAIRTVHSGEAVLSPRITAQVLQQLRSGQSASQPDSH 162 Query: 174 ---------------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LT RE L+L GY++ EI+E +S+ TV ++ K + Sbjct: 163 ATPVAAAATAPPAEDLTPRELDVLKLMALGYSNTEISECEFVSMATVKTHVRHILTKTGS 222 Query: 219 VNRIQAIAKAIRFGYIC 235 +R+ A+ A+ G + Sbjct: 223 RDRVHAVLYALTHGVVS 239 >gi|254391866|ref|ZP_05007060.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294816214|ref|ZP_06774857.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] gi|326444547|ref|ZP_08219281.1| response regulator receiver protein [Streptomyces clavuligerus ATCC 27064] gi|197705547|gb|EDY51359.1| two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|294328813|gb|EFG10456.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] Length = 244 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITDFLELFKKRSSAA----- 171 L G++ L + + A ++I+ ++ + ++ ++ A Sbjct: 112 LRAGACGFLPKDISPEELVTALHVVHTGEAVVAPRLLTRLISSYVTVPQRPATPAAGTRP 171 Query: 172 ----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE +L G + IA ++ +S TV ++ + KL +R QA+ Sbjct: 172 TGVPDGLTPREREVWRLIAAGLDNTGIAAEMFISPSTVKNHITALFAKLQVRDRAQAVIA 231 Query: 228 AIRFGYI 234 A G + Sbjct: 232 AYEAGLV 238 >gi|91774800|ref|YP_544556.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91708787|gb|ABE48715.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 212 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 10/117 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARN---- 173 L +GY++ E L + + A G +V+ L+ + A Sbjct: 94 LRAGADGYLLKDMEPEQLCDSLKKIAEGVTVIQDRLTEVLRQALQEQGSKPGPATPDQVS 153 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE LQ DG +++ IA KLG+S TV ++ KL +R++A A R Sbjct: 154 LTDREQEILQFLADGLSNKAIARKLGISDTTVKVHVKHLLSKLRLTSRLEAAVWAHR 210 >gi|194291367|ref|YP_002007274.1| transcriptional regulator LuxR family [Cupriavidus taiwanensis LMG 19424] gi|193225271|emb|CAQ71213.1| Putative Transcriptional Regulator, LuxR family [Cupriavidus taiwanensis LMG 19424] Length = 918 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 1/101 (0%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCLQLAGDGYTSEE 193 + L + + AC Q + + A LT +E L L +GY++ Sbjct: 818 ARQAASLPAPYVEKLLQACGQAAAEPSGAGRPAPPALVEPLTPKEQKVLHLLAEGYSNVA 877 Query: 194 IAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +AE+L +S TV +L + + KL A NR QA+A A + G + Sbjct: 878 MAERLFVSETTVRTHLRNISAKLHASNRTQAVAIARQLGLL 918 >gi|325977247|ref|YP_004286963.1| nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177175|emb|CBZ47219.1| Nitrate/nitrite response regulator protein narP [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 203 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 4/112 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERETSCL 182 GY++ + + N + Y I+ + ++ +TE++ L Sbjct: 92 GVRGYLLKDEDPTDIVNHIQKLLADDSYIAISSEVLTASFQHRQNEENVPTITEQQKQLL 151 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 Q+ DG T++EIA +L ++ TV YL NR QAIA AIR I Sbjct: 152 QMVADGLTNKEIAAQLFVTDRTVKTYLTELYEIFQVNNRAQAIAYAIRHNLI 203 >gi|307327703|ref|ZP_07606887.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886601|gb|EFN17603.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 233 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 9/114 (7%) Query: 131 YVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--LTERETSC 181 +++ ++ L V A G VI +L + ++A LT RE Sbjct: 111 FLLKDTDPEQLVRAVRTLAEGGSVLDPAVTRAVIGGYLAAEAEATAAEAVEALTPREREV 170 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L G+G + +IAE++GL+ TV ++ + KL +NR+QA A R G + Sbjct: 171 LALLGEGLANPQIAERMGLAPSTVKDHVRAVLGKLGGLNRVQAAIVADRAGLVT 224 >gi|302542220|ref|ZP_07294562.1| nitrate/nitrite response regulator protein NarL [Streptomyces hygroscopicus ATCC 53653] gi|302459838|gb|EFL22931.1| nitrate/nitrite response regulator protein NarL [Streptomyces himastatinicus ATCC 53653] Length = 258 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 8/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTER 177 GY++ + + + A G ++ L +A+ LT R Sbjct: 140 AGARGYLLKGAGRDEILRALHTVARGGAVFSPRMAERLGVLLGASGAASAKEAFPTLTAR 199 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L G +IA++L ++ TV ++GS KL +R QAI +A G Sbjct: 200 EREVLDLLAGGLGYRQIAQRLVVTDKTVRNHVGSIFAKLQVHDRAQAIVRAREAGL 255 >gi|284008814|emb|CBA75576.1| quorum-sensing transcriptional activator [Arsenophonus nasoniae] Length = 257 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 69/194 (35%), Gaps = 24/194 (12%) Query: 63 DIPNILIETY-------GDDFLFHFNSGLLPIIWQS-IQEETVIESSGQLSVRLEGGLLP 114 + P+ +E Y D + + + P W + + ++ S + + Sbjct: 61 NYPDQWVEIYKERNYQQIDPVVIFALNRVSPFEWDESLSINSNVDFSKIFDISKD--YNV 118 Query: 115 FAGIAFPVRLGFHKNGYVIF---TSE----------FLMLANEVIIEAHGACYQVITDFL 161 G F + ++ + +SE + ++++ H + + + Sbjct: 119 VNGYTFVLHDYNNRLAMLSIMMVSSEVVEIKKKIKEHKNDLHMLLLDVHEKITSLYREMI 178 Query: 162 E-LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 ++ +S + RE L A G T EIA LG+ + TV ++GS KL +N Sbjct: 179 RQNYQNPASGKECFSPRENEILYWASMGKTYSEIATILGIKLGTVKFHIGSVVKKLGVMN 238 Query: 221 RIQAIAKAIRFGYI 234 AI + I Sbjct: 239 AKHAIRLGVELQLI 252 >gi|94309557|ref|YP_582767.1| two component LuxR family transcriptional regulator [Cupriavidus metallidurans CH34] gi|93353409|gb|ABF07498.1| Two component transcriptional regulator, LuxR family [Cupriavidus metallidurans CH34] Length = 231 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSS----------- 169 L GY++ + + + + G V L+L K + Sbjct: 104 LQAGATGYLLKERDDVEIILSIRSALRGGAPIDPFVARRILDLAGKMAPLAGGAEVQAGP 163 Query: 170 --AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A L+ RE L L G T+ EIAE L LS TV ++ ++ KL +R QA+ + Sbjct: 164 TVGAPPLSAREIEILSLVSKGLTNREIAEVLSLSKLTVECHIRNSYKKLAVHSRTQAVFE 223 Query: 228 AIRFGYI 234 A G + Sbjct: 224 ARASGLL 230 >gi|5834774|emb|CAA74720.1| response regulatory protein [Streptomyces reticuli] Length = 217 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 36/110 (32%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G + + + LT RE L Sbjct: 108 AGATGYLLKAERAEDLFTAIQAAAQGRPALSPPVADRVMSRLRNPRPALTPREQDILAHL 167 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G ++ IA L +S TV +L KL R A+A A + Sbjct: 168 SRGLSNHAIARALYISEATVKTHLRRIYDKLGVDTRAGAVAVAKEQRLLS 217 >gi|87123599|ref|ZP_01079450.1| possible transcriptional regulator [Synechococcus sp. RS9917] gi|86169319|gb|EAQ70575.1| possible transcriptional regulator [Synechococcus sp. RS9917] Length = 92 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 40/67 (59%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S + +L+ RE ++L +G T++EIAE+L +S TV+ ++ + K A NR+ + A Sbjct: 9 SPSIDLSTREIEIVELVAEGLTNQEIAERLTISKRTVDNHVSNVFTKTGAKNRVALLNWA 68 Query: 229 IRFGYIC 235 + G IC Sbjct: 69 MDHGKIC 75 >gi|16077609|ref|NP_388423.1| two-component response regulator YdfH [Bacillus subtilis subsp. subtilis str. 168] gi|221308372|ref|ZP_03590219.1| hypothetical protein Bsubs1_03053 [Bacillus subtilis subsp. subtilis str. 168] gi|221312693|ref|ZP_03594498.1| hypothetical protein BsubsN3_03024 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317617|ref|ZP_03598911.1| hypothetical protein BsubsJ_02988 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321893|ref|ZP_03603187.1| hypothetical protein BsubsS_03059 [Bacillus subtilis subsp. subtilis str. SMY] gi|321314195|ref|YP_004206482.1| two-component response regulator YdfH [Bacillus subtilis BSn5] gi|68566110|sp|P96686|YDFI_BACSU RecName: Full=Transcriptional regulatory protein ydfI gi|1881349|dbj|BAA19376.1| ydfI [Bacillus subtilis] gi|2632842|emb|CAB12349.1| two-component response regulator [YdfH] [Bacillus subtilis subsp. subtilis str. 168] gi|320020469|gb|ADV95455.1| two-component response regulator (YdfH) [Bacillus subtilis BSn5] Length = 213 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN---LTERETS 180 GY++ + L + + G ++ E+ +R RN LTE+E Sbjct: 96 GAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRNETQLTEKEVI 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+ G S+ IA LG+S TV + L S KL A +R +A+ A++ G + Sbjct: 156 VLKAIAKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILT 210 >gi|53717636|ref|YP_106110.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|53722543|ref|YP_111528.1| two-component response regulator [Burkholderia pseudomallei K96243] gi|76819257|ref|YP_335719.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] gi|52212957|emb|CAH38995.1| putative two-component response regulator [Burkholderia pseudomallei K96243] gi|52423606|gb|AAU47176.1| DNA-binding response regulator [Burkholderia mallei ATCC 23344] gi|76583730|gb|ABA53204.1| DNA-binding response regulator [Burkholderia pseudomallei 1710b] Length = 223 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 8/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KKRSSAARNLTERE 178 F +GY++ + + G + E + +S LT RE Sbjct: 102 FGASGYLLKWCSPDGIVQAIRRVMAGRV-HIDPSLDEARVASAAGGRTLASPVDELTRRE 160 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L DG + EIA L +S TV+ + KL A N I A R+GY Sbjct: 161 KQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHWAYRYGY 215 >gi|288919194|ref|ZP_06413532.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288349441|gb|EFC83680.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 215 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAA-----RNLT 175 L +G+V+ +E L + + A G V +E F +R SA LT Sbjct: 96 LRNGASGFVLKDAEPADLLRAIRVVAAGESLLSPTVTRRVIEAFARRPSAPAAVDLSGLT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE + L G G +++EIA L +S T ++ +KL A +R Q A + G Sbjct: 156 GREREVMGLVGMGLSNDEIAAHLVISPATARTHVSRVMIKLAARDRAQLAVLANQAGL 213 >gi|300024660|ref|YP_003757271.1| LuxR family transcriptional regulator [Hyphomicrobium denitrificans ATCC 51888] gi|299526481|gb|ADJ24950.1| two component transcriptional regulator, LuxR family [Hyphomicrobium denitrificans ATCC 51888] Length = 207 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G+V T E +L V+ A G ++ ++++ LT RE L Sbjct: 100 GAWGFVSKTEEPQVLLEAVVSVARG---RLSLPYVDIDLLNHDPLEGLTARERELLAALA 156 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +G+T+ +IA + G+S +TV +L + KL NR A+A Sbjct: 157 NGWTNLQIAARTGISRNTVKYHLKNLYDKLGVSNRAMAVA 196 >gi|167574161|ref|ZP_02367035.1| probable two-component response regulator, LuxR family protein [Burkholderia oklahomensis C6786] Length = 192 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQL 184 NGY++ S L + + G + VI L + K A LT RE L+L Sbjct: 85 NGYLLKNSSKQTLLDAIWKVWRG--HTVIDPALNVDQVTTKAVPDGAVALTPRERQVLKL 142 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G + +IAEKL +++ TV + + KLDA N + A R G Sbjct: 143 ISEGCRNRDIAEKLTITIKTVETHRLNLMRKLDAHNAAELANWAHRLGL 191 >gi|126728963|ref|ZP_01744778.1| imidazoleglycerol-phosphate dehydratase [Sagittula stellata E-37] gi|126710893|gb|EBA09944.1| imidazoleglycerol-phosphate dehydratase [Sagittula stellata E-37] Length = 298 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 8/143 (5%) Query: 98 IESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVI-FTSEFLMLANEVIIEAHG----- 151 + + + E GL AG+AFP+R+G + +I F + A + ++ HG Sbjct: 119 ADKRRHVLLAAEHGLN--AGVAFPLRMGDPGHAALITFGGDHSAEAFDALLARHGWTLHT 176 Query: 152 ACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGS 211 A + ELFK LT ++ L L G G ++IA KLG+S V L S Sbjct: 177 AALAGHARYAELFKTEFIERNQLTAKQKELLCLIGHGMMDKQIAHKLGVSFSAVRQRLAS 236 Query: 212 ATVKLDAVNRIQAIAKAIRFGYI 234 K A NR A R G + Sbjct: 237 VQAKTGAQNRADLAGLAARIGLV 259 >gi|326779789|ref|ZP_08239054.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326660122|gb|EGE44968.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 244 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLE---------LFKKR 167 L +G++ +E L N + I A G +I FL + Sbjct: 113 LRAGASGFLGKGAEPDELLNAIRIAAAGEALLSPAATKGLIATFLAQGGSSGEGLDSAEY 172 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L G++++ IAE+L +S TV ++ A KL A +R Q + Sbjct: 173 AERLAALTGREREVLVQVAGGHSNDRIAERLAVSPLTVKTHVNRAMAKLGARDRAQLVVI 232 Query: 228 AIRFGYI 234 A G + Sbjct: 233 AYESGLV 239 >gi|172039086|ref|YP_001805587.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171700540|gb|ACB53521.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 265 Score = 91.6 bits (226), Expect = 7e-17, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 36/63 (57%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT+RE L+L G + +IAEKL ++V TV ++ + KL +R QA +A+R Sbjct: 202 SPLTDREFDVLELIVGGCNNADIAEKLCITVGTVKTHVRNILNKLCVDDRTQAAVRALRS 261 Query: 232 GYI 234 G + Sbjct: 262 GLV 264 >gi|312867968|ref|ZP_07728172.1| response regulator receiver domain protein [Streptococcus parasanguinis F0405] gi|311096372|gb|EFQ54612.1| response regulator receiver domain protein [Streptococcus parasanguinis F0405] Length = 199 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + YV+ +++ H EL + + L+ +E + L+ Sbjct: 93 LKAGVDAYVLK----ERRITDLMATLHAVLAGQKEYSPELMEGILTHPNPLSPQEQAVLK 148 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS T+ Y+ + KL+A NR +A A G++ Sbjct: 149 EVAKGASNQEIADRLFLSNGTIRNYMSAILTKLNAENRTEAARIAQEKGWL 199 >gi|256396266|ref|YP_003117830.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256362492|gb|ACU75989.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 224 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 14/124 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFL-------ELFKKRSS 169 L +G++ ++E L + G +I+ FL +L + + Sbjct: 97 LRAGASGFLGKSAEADELLAAIRTVERGDALLSPAATKALISRFLTTPVAPRQLDQAQRG 156 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A LT+RE +G +++EIA +L LS TV ++ A VK+ A +R Q + A Sbjct: 157 ALDALTDRERQITGFVAEGLSNDEIAARLVLSPATVKTHVNRAMVKVGARDRAQLVVFAH 216 Query: 230 RFGY 233 R G Sbjct: 217 RSGL 220 >gi|134103488|ref|YP_001109149.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291005968|ref|ZP_06563941.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133916111|emb|CAM06224.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 217 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L +G+++ T + L V A G Y +VI D R AARN Sbjct: 92 LHGGASGFLLKTGDPRELVLGVRAAADGGAYLSPPVARRVIRDLGGPRLSREVAARNRIE 151 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L+ERE L L G G ++ EIA ++ + TV AY+ + L NR+QA A G Sbjct: 152 GLSERERQVLALVGAGLSNAEIARRVHVVEGTVKAYVSAILNHLGFRNRVQAAILAYEAG 211 Query: 233 YI 234 + Sbjct: 212 LV 213 >gi|46580981|ref|YP_011789.1| LuxR family DNA-binding response regulator [Desulfovibrio vulgaris str. Hildenborough] gi|46450401|gb|AAS97049.1| DNA-binding response regulator, LuxR family [Desulfovibrio vulgaris str. Hildenborough] gi|311234669|gb|ADP87523.1| two component transcriptional regulator, LuxR family [Desulfovibrio vulgaris RCH1] Length = 216 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNL- 174 L +GY++ + +L + G Y +I DFL ++ ++ +L Sbjct: 94 TLSAGADGYLLKNASRDILFQAMQTVLAGRRYISPEISDLLIDDFLRHGRRDEASMLDLL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++RE L+L +G+ ++ +AEKL +S TV + + KL + + + AI G Sbjct: 154 SDREKQVLKLVAEGHGNKAVAEKLCISHKTVEKHKANLKRKLGTASTAELVTFAIEHGL 212 >gi|88855696|ref|ZP_01130359.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] gi|88815020|gb|EAR24879.1| putative two-component system response regulator [marine actinobacterium PHSC20C1] Length = 225 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 11/111 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAA--------R 172 L G+++ + +L + A+G V LE F + S Sbjct: 97 LRAGARGFLLKDAGSALLGQAIRCAANGDALIAPNVTVRLLEAFAGQPSPVGEPIAQPTE 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQ 223 LT RE L G ++ EIA +L ++V TV +L S KL NR++ Sbjct: 157 PLTAREEEVLATVARGLSNSEIASELHITVSTVKTHLASLMTKLGVRNRVE 207 >gi|239929732|ref|ZP_04686685.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291438058|ref|ZP_06577448.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291340953|gb|EFE67909.1| two component system response regulator [Streptomyces ghanaensis ATCC 14672] Length = 221 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 50/128 (39%), Gaps = 17/128 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY----------------QVITDFLELFKKR 167 LG G+++ + + L V A GA + + R Sbjct: 94 LGGGATGFLLKSGDPYELIAGVRAVAGGAAFLSPTVARYVIEGLGGAHGTGRLTREAEAR 153 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A L+ RE L L G G ++ EIA +L L TV AY+ + +L NR+QA Sbjct: 154 ARVAV-LSPREREVLGLVGAGLSNPEIAARLHLVEGTVKAYVSAVLDRLGVRNRVQAAIV 212 Query: 228 AIRFGYIC 235 A G + Sbjct: 213 AHEAGLVT 220 >gi|163755204|ref|ZP_02162324.1| response regulator [Kordia algicida OT-1] gi|161324624|gb|EDP95953.1| response regulator [Kordia algicida OT-1] Length = 213 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 47/214 (21%), Positives = 93/214 (43%), Gaps = 34/214 (15%) Query: 48 QQLICELHNY-------DLDSGDIPNILIETYGDDFLFHFNSG---------LLP----- 86 Q LIC+ HN L+S + NI I T G + H ++ +P Sbjct: 5 QLLICDDHNLVSEGIAVMLESENNYNIHIVTSGKQAIQHLHNHEVHVFILDISMPEMDGL 64 Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVI 146 ++ +++EE + ++ L++ + + A + GYV+ ++ ML + Sbjct: 65 VVLDTLKEEKLSQNVLMLTMHDQAKYIKKA-------IEKGAKGYVLKSTSKTMLVEAIQ 117 Query: 147 IEAHGACY------QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 +G + +++ + E K + + LT RE L+L ++EIAE L + Sbjct: 118 KVYNGENFYDPRLTEILLNTSEESKNKQATHVKLTPREIDILKLIAQNKKTKEIAELLFI 177 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SV+TV ++ + KL+ + + + AI+ +I Sbjct: 178 SVNTVQSHKKNLYSKLNIHSVSELVTYAIQHKFI 211 >gi|52222873|gb|AAU34214.1| two component response regulator MppU [Streptomyces hygroscopicus] Length = 222 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLE------LFKKRSSAARNL 174 L F +G+++ S +L V G + L+ ++ L Sbjct: 97 LRFGASGFLLKRSGPTLLVEAVRAAMAGDSLISPSITVRLLQHVTGPTTGRRPRRRDSVL 156 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 TERE +G T+ +IA +L +S TV ++ S KL NR+ +A GY Sbjct: 157 TEREVEIAGKVAEGKTNSDIARELFISAGTVKTHVASIQRKLQVRNRVGVAVRAWELGY 215 >gi|302521872|ref|ZP_07274214.1| LOW QUALITY PROTEIN: two component transcriptional regulator [Streptomyces sp. SPB78] gi|302430767|gb|EFL02583.1| LOW QUALITY PROTEIN: two component transcriptional regulator [Streptomyces sp. SPB78] Length = 274 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLE--LFKKRSSAAR------ 172 L +G+++ S + L V A G V +E L +R + + Sbjct: 154 LAAGASGFLLKNSSYEELTGAVRAAAAGHSALSPAVTQRIIEGHLSGRRQPSDQELARLG 213 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LTERE L+L DG ++ EIAE+L +S+HTV ++ +K +R QA A Sbjct: 214 DLTEREVDVLRLIRDGLSNAEIAERLVVSLHTVKTHVSRVLMKTGCQSRAQAAVLAR 270 >gi|254391784|ref|ZP_05006980.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294813562|ref|ZP_06772205.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] gi|197705467|gb|EDY51279.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|294326161|gb|EFG07804.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] Length = 226 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 18/129 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-----------YQVITDFLELFKKRSSAAR 172 L G+++ +L V A G + + + + ++ R Sbjct: 98 LRNGACGFLLKDGSPTLLTEAVRAAAAGGSLISPTITVRLLRHMASPEPDRNGRPAAEHR 157 Query: 173 -------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE ++ G T+EE+A +L +++ TV +LG+ KL A NR++ Sbjct: 158 APARLSEPLTERELDVIRRVARGRTNEEVAAELYVTLSTVKTHLGNVQRKLSARNRVEIA 217 Query: 226 AKAIRFGYI 234 A A G + Sbjct: 218 AWAWENGLV 226 >gi|187250721|ref|YP_001875203.1| two component LuxR family transcriptional regulator [Elusimicrobium minutum Pei191] gi|186970881|gb|ACC97866.1| Two-component transcriptional regulator, LuxR family [Elusimicrobium minutum Pei191] Length = 215 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 7/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARNLTERE 178 G+V+ S + + + G Y V+ FL LT +E Sbjct: 98 AGARGFVVKVSSADEIIEAIKEVSAGRFYLCSKVSKFVVQGFLGKASPSKKDPSGLTPKE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LQL +G++S+EIA++ GLS++TV+ + + KLD + + + AI+ G Sbjct: 158 KQILQLIAEGFSSKEIAKEFGLSLNTVHVHRNNIMRKLDIHKQAELVRYAIKEGI 212 >gi|50120831|ref|YP_049998.1| transcriptional regulator NarP [Pectobacterium atrosepticum SCRI1043] gi|49611357|emb|CAG74804.1| nitrate/nitrite response regulator [Pectobacterium atrosepticum SCRI1043] Length = 210 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 1/104 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVII-EAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 + +GY++ S L + + +A + K+ S LTERE L Sbjct: 99 MDAGADGYLLKDSAPEHLLDSIRSSDAFSEQVRDALRHRIAIKETPSPFTVLTERELDVL 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 159 QEVASGLSNKQIAAVLYISEETVKVHIRNMLRKLNVRSRVAATV 202 >gi|162456402|ref|YP_001618769.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] gi|161166984|emb|CAN98289.1| DNA-binding response regulator [Sorangium cellulosum 'So ce 56'] Length = 233 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 7/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L GY++ TS+ + + A G V+ + + S LT Sbjct: 114 LRAGAQGYLVKTSKLEEVIEGIRRIATGGAPLSSSIAGAVVRAMRKPASEGSGGLDALTP 173 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L G ++ E A +L +S TV + KL + ++ A+R G I Sbjct: 174 RERQVLRLLAAGVSTRETAARLTISPKTVETHRVRIYAKLGCKSAVELTRIAVRTGLI 231 >gi|24216568|ref|NP_714049.1| response regulator containing a signal receiver domain and a DNA-binding domain [Leptospira interrogans serovar Lai str. 56601] gi|24197887|gb|AAN51067.1| response regulator containing a signal receiver domain and a DNA-binding domain [Leptospira interrogans serovar Lai str. 56601] Length = 223 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 13/124 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELF----------KKRSSA 170 L NGYV+ L + G Y + T FL F + A Sbjct: 98 LELGINGYVLKDDAGNDLLRAIEAVHKGETYLSPGITTHFLSGFVGSGKPGEDNQDAKKA 157 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L++RE L+L +G ++E I + L +S TV + + KLD + AIR Sbjct: 158 FSILSDREREILKLVAEGNSNESIGKILRISPATVKVHRANIMKKLDLHKVADLVMYAIR 217 Query: 231 FGYI 234 G I Sbjct: 218 AGLI 221 >gi|298241116|ref|ZP_06964923.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297554170|gb|EFH88034.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 938 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 35/64 (54%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L L G ++++IAE L ++ TV ++ KL+A NR QA+A+A Sbjct: 872 DPLSAREQDVLHLLARGASNQDIAEALVVTPGTVKHHITHILSKLEATNRTQAVARAQAL 931 Query: 232 GYIC 235 G + Sbjct: 932 GLLS 935 >gi|291300770|ref|YP_003512048.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290569990|gb|ADD42955.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 233 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---------L 174 L G+++ + + V + A G + L + + RN L Sbjct: 96 LRAGATGFLVKDIQPDDFLHAVRVAARGDALLAPSITRRLISRYVTQPRNTGTGVGLEDL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE + L G T++EIA+ + +S T ++ A K A +R Q + A G + Sbjct: 156 TNREREAVALVAQGLTNDEIADHMAISPMTAKTHINRAMAKTAARDRAQLVVLAYESGLV 215 Query: 235 C 235 Sbjct: 216 V 216 >gi|171915297|ref|ZP_02930767.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 229 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 16/144 (11%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVR---------LGFHKNGYVIFTSEFLMLANEVIIEAH 150 + +L RL G L+ A + V L +GY++ S+ + + + Sbjct: 79 NGAELISRLAGKLICAAFVVLTVHDDSAKVFAALRAGAHGYLLKGSKPGEILAGIRAASE 138 Query: 151 GAC-------YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 G +I F E K LT RE L+ G +E+A L LS Sbjct: 139 GGAPLSQEISRLLIQSFQEPPKVEKRTIPGLTPREAQILERLAQGMAPKEVAYDLSLSYE 198 Query: 204 TVNAYLGSATVKLDAVNRIQAIAK 227 TV YL KL +R +A+ K Sbjct: 199 TVRDYLKGVYQKLHVRSRTEAVIK 222 >gi|154707512|ref|YP_001424377.1| response regulator [Coxiella burnetii Dugway 5J108-111] gi|154356798|gb|ABS78260.1| response regulator [Coxiella burnetii Dugway 5J108-111] Length = 214 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 6/121 (4%) Query: 120 FPVRL-GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARN--- 173 P+RL G++ +S+ L + G Y I + L L K ++A Sbjct: 89 LPMRLLEVGVRGFITKSSDTTELEQAIRAVYKGQRYISSAIANRLALSKTTTAATSPFKK 148 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L L G +E IA++L ++ TVN++ KL N ++ I A+++G Sbjct: 149 LSDREMEVLLLLAKGKKAEVIAKQLHITGKTVNSHRYRIFEKLGVKNDVELIKLAVQYGL 208 Query: 234 I 234 + Sbjct: 209 V 209 >gi|90023460|ref|YP_529287.1| two component LuxR family transcriptional regulator [Saccharophagus degradans 2-40] gi|89953060|gb|ABD83075.1| two component transcriptional regulator, LuxR family [Saccharophagus degradans 2-40] Length = 205 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+++ + +LA ++ A + I L + L+++E L+ Sbjct: 99 LAAGVYGFILKDAPSEILAE--VLYKAMAGKKTIDPELAIAALDDK--DPLSDKERKALR 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LAG G + EIA L LS TV YL A KL+A NRI A A + G++ Sbjct: 155 LAGSGKKTAEIANDLCLSEGTVRNYLSEAISKLNATNRIDAARIARQKGWL 205 >gi|328885153|emb|CCA58392.1| DNA-binding response regulator, LuxR family [Streptomyces venezuelae ATCC 10712] Length = 218 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---- 172 LG +G+++ + + L V A G +VI R++ AR Sbjct: 94 LGSGVSGFLLKSGDPRELIAGVRAVAGGGAALSPTVARRVIDTLGGERFTRAARARTRLE 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G +++EIA+++ + TV A++ + +L NR+Q A G Sbjct: 154 PLTGREREVVALLAAGLSNQEIADRMYVVEGTVKAHVSAVLARLGLRNRVQLAVLAYEAG 213 Query: 233 YI 234 + Sbjct: 214 LV 215 >gi|284045220|ref|YP_003395560.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283949441|gb|ADB52185.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 223 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKK-------------R 167 L +G+++ L + A G +V L+ F Sbjct: 95 LRAGASGFLLKDVPPEQLTAAIRAVAGGDAVVAPRVTRALLDTFAHHLPADAAAPVPPHE 154 Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE L G T+ EIAE+L LS TV ++G KL +R+QA+ Sbjct: 155 HPRLSELTAREHEVLLELAAGRTNAEIAERLVLSEATVKTHVGRILGKLALRDRVQAVIL 214 Query: 228 AIRFGYI 234 A + G + Sbjct: 215 AYQIGLV 221 >gi|50119067|ref|YP_048234.1| quorum-sensing transcriptional regulator [Pectobacterium atrosepticum SCRI1043] gi|49609593|emb|CAG73026.1| quorum-sensing transcriptional regulator [Pectobacterium atrosepticum SCRI1043] Length = 242 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 24/194 (12%) Query: 62 GDIPNILIETYGDDFLFHFNSGLL-------PIIWQ-SIQEETVIESSGQLSVRLEGGLL 113 P+ + Y ++ H + +L P W+ S+ T ++ + + + ++ Sbjct: 48 SSYPDEWVNLYKENKYQHIDPVVLASFNKISPFSWEKSLVINTRLQLAKIFDLSKKYDII 107 Query: 114 PFAGIAFPVRLGFHKNGYVI-------------FTSEFLMLANEVIIEAHGACYQVITDF 160 G F + + F E + ++IEA+ + + Sbjct: 108 --NGYTFVLHDHGDNLAMLSIIVDNSYPDDVETFIEERKDIFQMLLIEAYEKIISLCKEM 165 Query: 161 LELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVN 220 + KK+ + ++RE L A G T E+A LG+ TV ++G+ KL +N Sbjct: 166 IG-NKKQLNNKEIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVLN 224 Query: 221 RIQAIAKAIRFGYI 234 AI + I Sbjct: 225 AKHAIRLGVELQLI 238 >gi|320012915|gb|ADW07765.1| two component transcriptional regulator, LuxR family [Streptomyces flavogriseus ATCC 33331] Length = 204 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 11/117 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA----R 172 L +G+++ S + L V G ++I L ++ S R Sbjct: 84 LAAGASGFLLKNSSYEELTGAVRAAVAGHSALSPAVTQRIIEGHLRGRRRPSDQDLARLR 143 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LTERE L+L DG ++ EIAE+L +S+HTV+ ++ K +R QA A Sbjct: 144 DLTEREIDVLRLIRDGLSNAEIAERLVVSLHTVSTHVSRVLTKTGCQSRAQAAVLAR 200 >gi|297589527|ref|ZP_06948168.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|283471613|emb|CAQ50824.1| transcriptional regulatory protein DegU (Protease production enhancerprotein) [Staphylococcus aureus subsp. aureus ST398] gi|297578038|gb|EFH96751.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus MN8] gi|298695655|gb|ADI98877.1| two-component response regulator [Staphylococcus aureus subsp. aureus ED133] gi|312437187|gb|ADQ76258.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH60] gi|323439615|gb|EGA97334.1| two-component response regulator [Staphylococcus aureus O11] gi|323442719|gb|EGB00346.1| two-component response regulator [Staphylococcus aureus O46] Length = 200 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L GY++ + L + G Y ++ +F+ + ++ + Sbjct: 77 LRNGAKGYILKNAPDEQLLLAIRTVYKGETYVDMKLTTSLVNEFVSNSNQDTANTSDPFK 136 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L GY ++EIAEKL +SV TV A+ KL ++ + + A++ Sbjct: 137 ILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKK 196 Query: 233 YI 234 + Sbjct: 197 LL 198 >gi|159039733|ref|YP_001538986.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157918568|gb|ABV99995.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 228 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 47/117 (40%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA------RNLTER 177 GYV T LA V A G ++ L+ F R A LT R Sbjct: 112 GARGYVTKTISPDDLAAAVRRVADGDAVFSPRLAGFVLDAFAARPDAPVSDPELDQLTNR 171 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L GY +EIA++L +S+ TV ++ + KL +R + A + Sbjct: 172 EREVLRLLARGYAYKEIAKELYISIKTVETHVSNVLRKLQMSSRYELSRWAADRRLV 228 >gi|78060780|ref|YP_367355.1| two component LuxR family transcriptional regulator [Burkholderia sp. 383] gi|77965330|gb|ABB06711.1| two component transcriptional regulator, LuxR family [Burkholderia sp. 383] Length = 209 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 5/115 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARN---LTERET 179 GYV ++ L + + I +G Y ++ D L +AA LT+R+ Sbjct: 95 AQGAMGYVPKSASPRTLLSAIRIALNGERYVPPLVLDDPALQHPDGAAAARGSMLTQRQI 154 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G ++ IA+KLGLS T+ A++ + L+ +NR QA A + G I Sbjct: 155 EVLRYLAEGVPNKVIADKLGLSEKTIKAHITAIFKALNVINRTQAAAAGRKAGLI 209 >gi|49484607|ref|YP_041831.1| response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|82751986|ref|YP_417727.1| two-component response regulator [Staphylococcus aureus RF122] gi|257423874|ref|ZP_05600303.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257426557|ref|ZP_05602959.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257429193|ref|ZP_05605580.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257431839|ref|ZP_05608202.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257434799|ref|ZP_05610850.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|258425065|ref|ZP_05687936.1| two-component system response regulator [Staphylococcus aureus A9635] gi|282902306|ref|ZP_06310199.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|282906734|ref|ZP_06314582.1| two-component system NarL family response regulator NreC [Staphylococcus aureus subsp. aureus Btn1260] gi|282909710|ref|ZP_06317519.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911956|ref|ZP_06319752.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282915251|ref|ZP_06323028.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282917742|ref|ZP_06325492.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus D139] gi|282920975|ref|ZP_06328693.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C427] gi|282925881|ref|ZP_06333529.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C101] gi|283767476|ref|ZP_06340391.1| two-component system response regulator [Staphylococcus aureus subsp. aureus H19] gi|283959174|ref|ZP_06376615.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|293497647|ref|ZP_06665501.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus 58-424] gi|293511227|ref|ZP_06669923.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus M809] gi|293549835|ref|ZP_06672507.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|295428978|ref|ZP_06821600.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|81696432|sp|Q6GE42|NREC_STAAR RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|123741052|sp|Q2YZ42|NREC_STAAB RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|49242736|emb|CAG41461.1| putative response regulator [Staphylococcus aureus subsp. aureus MRSA252] gi|82657517|emb|CAI81959.1| two-component response regulator [Staphylococcus aureus RF122] gi|257272892|gb|EEV04994.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 55/2053] gi|257276188|gb|EEV07639.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 65-1322] gi|257279674|gb|EEV10261.1| two-component system response regulator [Staphylococcus aureus subsp. aureus 68-397] gi|257282718|gb|EEV12850.1| two-component system response regulator [Staphylococcus aureus subsp. aureus E1410] gi|257285395|gb|EEV15511.1| two-component system response regulator [Staphylococcus aureus subsp. aureus M876] gi|257844899|gb|EEV68942.1| two-component system response regulator [Staphylococcus aureus A9635] gi|282312710|gb|EFB43114.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C101] gi|282315390|gb|EFB45774.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus C427] gi|282318027|gb|EFB48387.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus D139] gi|282320972|gb|EFB51306.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M899] gi|282323652|gb|EFB53968.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WBG10049] gi|282326284|gb|EFB56588.1| two-component system response regulator [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329633|gb|EFB59154.1| two-component system NarL family response regulator NreC [Staphylococcus aureus subsp. aureus Btn1260] gi|282596765|gb|EFC01724.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus C160] gi|283461355|gb|EFC08439.1| two-component system response regulator [Staphylococcus aureus subsp. aureus H19] gi|283788766|gb|EFC27593.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus A017934/97] gi|290918882|gb|EFD95958.1| DNA-binding response regulator, LuxR family [Staphylococcus aureus subsp. aureus M1015] gi|291096578|gb|EFE26836.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus 58-424] gi|291465853|gb|EFF08383.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus subsp. aureus M809] gi|295126737|gb|EFG56381.1| response regulator [Staphylococcus aureus subsp. aureus EMRSA16] gi|302334020|gb|ADL24213.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JKD6159] gi|315194884|gb|EFU25272.1| two-component response regulator [Staphylococcus aureus subsp. aureus CGS00] Length = 217 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L GY++ + L + G Y ++ +F+ + ++ + Sbjct: 94 LRNGAKGYILKNAPDEQLLLAIRTVYKGETYVDMKLTTSLVNEFVSNSNQDTANTSDPFK 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L GY ++EIAEKL +SV TV A+ KL ++ + + A++ Sbjct: 154 ILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKK 213 Query: 233 YI 234 + Sbjct: 214 LL 215 >gi|302560889|ref|ZP_07313231.1| two-component system response regulator TcsR2 [Streptomyces griseoflavus Tu4000] gi|302478507|gb|EFL41600.1| two-component system response regulator TcsR2 [Streptomyces griseoflavus Tu4000] Length = 213 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G+++ LA+ V G + D + S+ LT RE L+ Sbjct: 106 MDAGAAGFLVKDGPVEELASAVRRVLAGET---VVDPVLAAAALSAGPSPLTARERDVLR 162 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T +IA ++ LS TV +L + K NR +A+ +A G++ Sbjct: 163 ASAGGATVADIAARVHLSESTVRNHLSAVIGKTGTRNRTEALHEARHKGWL 213 >gi|259418943|ref|ZP_05742860.1| two component transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] gi|259345165|gb|EEW57019.1| two component transcriptional regulator, LuxR family [Silicibacter sp. TrichCH4B] Length = 214 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 43/111 (38%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA-RNLTERETSCL 182 L G++ T L N V + G Y + E + L+ RE L Sbjct: 103 LDAGAIGFIPKTMGAQSLLNAVRFMSAGEIYVPVELMREEASAPAHPLLAQLSPREVEVL 162 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G +++EIA L L T+ ++ + KLDA NR QA A G Sbjct: 163 SGLCRGQSNKEIARDLNLQEVTIKLHVRTLCRKLDAKNRTQAAMTAKEAGL 213 >gi|222432077|gb|ACM50924.1| ExpR [Pectobacterium carotovorum subsp. carotovorum] Length = 242 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 66/195 (33%), Gaps = 26/195 (13%) Query: 62 GDIPNILIETY-------GDDFLFHFNSGLLPIIWQSIQEETVIESSGQLS--VRLEGGL 112 P+ + Y D + + + P W ++ VI + QL+ L Sbjct: 48 SSYPDEWVNLYKANKYQHIDPVVLASFNKISPFSW---EKSLVINTRLQLAKIFDLSKKY 104 Query: 113 LPFAGIAFPVRLGFHKNGYVI-------------FTSEFLMLANEVIIEAHGACYQVITD 159 G F + + F E ++I+A+ + + Sbjct: 105 NIINGYTFVLHDHSDNLAMLSIIVDSSYPDDVDTFIEEKKDTFQMLLIDAYEKIISLCRE 164 Query: 160 FLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAV 219 +E KK + ++RE L A G T E+A LG+ TV ++G+ KL + Sbjct: 165 MIE-NKKPLNNKEIFSQRENEILYWASMGKTYLEVAIILGIKTSTVKFHIGNVVKKLGVL 223 Query: 220 NRIQAIAKAIRFGYI 234 N AI + I Sbjct: 224 NAKHAIRLGVELQLI 238 >gi|52082354|ref|YP_081145.1| putative transcriptional regulator YdfI [Bacillus licheniformis ATCC 14580] gi|52787743|ref|YP_093572.1| YdfI [Bacillus licheniformis ATCC 14580] gi|319648225|ref|ZP_08002442.1| sensory transduction protein ydfI [Bacillus sp. BT1B_CT2] gi|52005565|gb|AAU25507.1| putative transcriptional regulator YdfI [Bacillus licheniformis ATCC 14580] gi|52350245|gb|AAU42879.1| YdfI [Bacillus licheniformis ATCC 14580] gi|317389860|gb|EFV70670.1| sensory transduction protein ydfI [Bacillus sp. BT1B_CT2] Length = 212 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLEL---FKKRSSAARNLTERETS 180 GY++ + L + + G ++ E+ K+ S+ LTE+E Sbjct: 96 GAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQLERMKKQSSDTQLTEKEVI 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+ G S+ IA LG+S TV + L S KL A +R +A+ A++ G + Sbjct: 156 VLKAIAKGLKSKAIAFDLGVSERTVKSRLTSIYNKLGANSRTEAVTIAMQRGVLT 210 >gi|146280178|ref|YP_001170335.1| hypothetical protein Rsph17025_4179 [Rhodobacter sphaeroides ATCC 17025] gi|145558419|gb|ABP73030.1| two component transcriptional regulator, LuxR family [Rhodobacter sphaeroides ATCC 17025] Length = 232 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCL 182 L GY+ T + N + G Y + F+ L +R SS R LT +E L Sbjct: 97 LEKGAAGYIDKTQGARSMVNALNFILAGETY--LPAFMRLTPRRHSSDERGLTPKELEVL 154 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G ++EIA+ +GLS TV ++ S KL+ NR QA A +FGY Sbjct: 155 GGLTIGLMNKEIAQNMGLSEVTVKMHVRSICAKLNVKNRTQAAMVAAQFGY 205 >gi|302206769|gb|ADL11111.1| Two component transcriptional regulator, LuxR family and REC superfamily [Corynebacterium pseudotuberculosis C231] gi|308277014|gb|ADO26913.1| Two component transcriptional regulator, LuxR family and REC superfamily [Corynebacterium pseudotuberculosis I19] Length = 208 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 5/114 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKR--SSAARNLTERE 178 L + GY++ + +L + G +V++ L+ K SS+ LT RE Sbjct: 91 LEYGARGYLLKDAGPELLVEAIRSAYRGDVLISPEVLSLLLDRRSKPNTSSSDLPLTCRE 150 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L G T++EIA +L +S+ TV ++ +LD NR++ A R G Sbjct: 151 LEVARLIAYGRTNQEIATELFISLSTVKTHVARIQERLDVRNRVEIAAALWRSG 204 >gi|302536340|ref|ZP_07288682.1| two-component system DNA-binding response regulator [Streptomyces sp. C] gi|302445235|gb|EFL17051.1| two-component system DNA-binding response regulator [Streptomyces sp. C] Length = 231 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + V G ++ L+ F + LT+RE Sbjct: 116 GARGYVTKTITGTDLVDSVFRVQDGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 175 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 176 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 231 >gi|326442029|ref|ZP_08216763.1| LuxR family two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 229 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 18/129 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-----------YQVITDFLELFKKRSSAAR 172 L G+++ +L V A G + + + + ++ R Sbjct: 101 LRNGACGFLLKDGSPTLLTEAVRAAAAGGSLISPTITVRLLRHMASPEPDRNGRPAAEHR 160 Query: 173 -------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 LTERE ++ G T+EE+A +L +++ TV +LG+ KL A NR++ Sbjct: 161 APARLSEPLTERELDVIRRVARGRTNEEVAAELYVTLSTVKTHLGNVQRKLSARNRVEIA 220 Query: 226 AKAIRFGYI 234 A A G + Sbjct: 221 AWAWENGLV 229 >gi|297192611|ref|ZP_06910009.1| two-component system DNA-binding response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151436|gb|EFH31165.1| two-component system DNA-binding response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 229 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + V G ++ L+ F + LT+RE Sbjct: 114 GARGYVTKTITGSDLVDSVFRVQDGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 173 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 174 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 229 >gi|289644902|ref|ZP_06476947.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289505287|gb|EFD26341.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 222 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 6/112 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNL---TERET 179 GY++ + L + A G V L ++ + L +ERE Sbjct: 98 AGAAGYLLKQIKGTDLVGAIHTIASGRSLLDPAVTQKVLARLREGPAEDSRLATLSERER 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L L +G T+ +IA ++ LS TV Y+ + KL+ +R QA A + Sbjct: 158 EILLLIAEGLTNRQIASRIHLSDKTVKNYVSAILDKLELTSRTQAAVYATKL 209 >gi|284042088|ref|YP_003392428.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946309|gb|ADB49053.1| transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 196 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 35/69 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R + L+ERE L L +G T+ +I L LS HT+ + S KL A NR +A+ Sbjct: 128 RPPSPTRLSERERQVLTLVSEGSTNAQIGRSLCLSPHTIKQHTSSVYRKLHARNRAEAVT 187 Query: 227 KAIRFGYIC 235 +A G + Sbjct: 188 RARELGLLV 196 >gi|256375752|ref|YP_003099412.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255920055|gb|ACU35566.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 214 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 8/117 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFK-----KRSSAARNLT 175 L G+++ +E L V+ A G ++ L + + + L+ Sbjct: 95 LDVGAQGFLLKDAEPEALVRAVLDLAAGGAVLDPRIAARLLPRLRAGRLLRPNPQLDALS 154 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE L+L DG + IA +LGLS TV +Y+ + +KL NR+QA A + G Sbjct: 155 TRERQVLELLSDGLPNAAIATELGLSEATVKSYVSTVLMKLGVENRVQAALAAHQVG 211 >gi|254444769|ref|ZP_05058245.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] gi|198259077|gb|EDY83385.1| Sigma-70, region 4 family [Verrucomicrobiae bacterium DG1235] Length = 211 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 5/115 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-----KKRSSAARNLTERETS 180 NG V S L + + GA Y + L K + + + LT RET Sbjct: 95 RGVNGLVTKNSSIESLKDAIGQILKGAVYYSPEAYKLLRQPITNKDYNDSLKMLTPRETD 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 LQ+ G+GY+S+EIA LSV T++A+ + KL+ A++ + Sbjct: 155 VLQMVGEGYSSKEIARSFNLSVRTIDAHRSNIMRKLNLRGATDMTRLAVKLKLVS 209 >gi|167573291|ref|ZP_02366165.1| DNA-binding response regulator [Burkholderia oklahomensis C6786] Length = 205 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 53/144 (36%), Gaps = 10/144 (6%) Query: 97 VIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV 156 ++ + + + L A A +R F +GY++ + V G + Sbjct: 57 ILRTYPDMRFVVFTALGSEARAADAIR--FGASGYLLKWCSPDGIVQAVRRVMAGRV-HI 113 Query: 157 ITDFLELF-------KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYL 209 E + + LT RE L+L DG + EIA L +S TV+ + Sbjct: 114 DPSLDEARVASAAGGRTLAPPVDKLTRREKQILKLIADGMRNREIASLLNISQKTVDCHR 173 Query: 210 GSATVKLDAVNRIQAIAKAIRFGY 233 KL A N I A R+GY Sbjct: 174 QRLMQKLGARNVANVIHWAYRYGY 197 >gi|163938916|ref|YP_001643800.1| two component LuxR family transcriptional regulator [Bacillus weihenstephanensis KBAB4] gi|163861113|gb|ABY42172.1| two component transcriptional regulator, LuxR family [Bacillus weihenstephanensis KBAB4] Length = 214 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERET 179 GY++ ++ L + G +++ + A NLT++E Sbjct: 98 GAKGYLLKDTDRENLFRTLEAAIRGEILLQPNIMEKIVKYKRKEVHADKVAENNLTDKEL 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ GY ++EIA +G++ TV AYL + KL +R +A+A +I I Sbjct: 158 FVLKAIARGYKNKEIAFDMGIAERTVKAYLTNIYNKLGVNSRSEAVAVSIERKLI 212 >gi|329938540|ref|ZP_08287965.1| luxR family two-component response regulator [Streptomyces griseoaurantiacus M045] gi|329302513|gb|EGG46404.1| luxR family two-component response regulator [Streptomyces griseoaurantiacus M045] Length = 230 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 9/115 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA--RNLTE 176 +GYV+ + L + V A G A +++ ++ A LT Sbjct: 107 AGASGYVLKQIQGSDLVSAVRTVAAGQSLLDANATARLLARLRGGQEQEEEAEALPGLTP 166 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L L G+G T+ +I ++L L+ TV ++ KL R+QA A + Sbjct: 167 REREILALIGEGLTNRQIGQRLYLAEKTVKNHISRLLAKLGVERRVQAAVIATQA 221 >gi|311103688|ref|YP_003976541.1| LuxR family transcriptional regulator [Achromobacter xylosoxidans A8] gi|310758377|gb|ADP13826.1| bacterial regulatory protein, LuxR family protein 2 [Achromobacter xylosoxidans A8] Length = 83 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/78 (38%), Positives = 40/78 (51%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + L + A + L+ER+ SCL A G TS E A LG+S TVN +L +A KL Sbjct: 1 MGSALNPSSSPAQAIKPLSERQASCLHWAALGKTSWETARILGVSESTVNFHLCNACEKL 60 Query: 217 DAVNRIQAIAKAIRFGYI 234 R A+ A+R G I Sbjct: 61 GVRGRRAAVVAALRLGLI 78 >gi|284993187|ref|YP_003411742.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284066433|gb|ADB77371.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 201 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 37/111 (33%), Positives = 50/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ T +L + V H V + + S+ LT RE L+ Sbjct: 94 LEAGVRGFLPKTVGAPVLTDVVRTV-HRGGRYVDPELAA--EAISAGDSPLTPREADVLE 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LA G EEIA + LS TV +L +A VKL A NR A+ A R G+I Sbjct: 151 LAAGGAPVEEIAARAHLSPGTVRNHLSAAAVKLGAPNRHAAVEAARRHGWI 201 >gi|238795934|ref|ZP_04639446.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC 43969] gi|238720139|gb|EEQ11943.1| Transcriptional activator protein echR [Yersinia mollaretii ATCC 43969] Length = 245 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 44/229 (19%), Positives = 73/229 (31%), Gaps = 19/229 (8%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICE--LHNYDLDSGDIPNILIETYGDDFLFHFN 81 I+N I+ R A + + ++ + + NY LD D + Sbjct: 15 IKNYIQRRIKAYGDLRYSYLVMNKKTPLHPAIISNYPLDWIKKYKKNSYHLIDPVILTAK 74 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEFLM 140 + P W + + L G F + + + I Sbjct: 75 DKVAPFAWDDNSVINKKSTDSAV-FNLAREYNIINGYTFVLHDNNNNMATLNISNGNDDS 133 Query: 141 LANEVIIEAHGACYQVI-----TDFLELFKKRSSAARNL----------TERETSCLQLA 185 + + IE + Q++ L L++K + L + RE L A Sbjct: 134 IYFDESIEVNKEKIQMLLILTHDKMLGLYQKNINENNELGKVPNGREIFSPRENEILYWA 193 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EIA LG+ TV ++G+ KL +N AI I I Sbjct: 194 SVGKTYSEIAIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 242 >gi|225018320|ref|ZP_03707512.1| hypothetical protein CLOSTMETH_02264 [Clostridium methylpentosum DSM 5476] gi|224948920|gb|EEG30129.1| hypothetical protein CLOSTMETH_02264 [Clostridium methylpentosum DSM 5476] Length = 206 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 11/138 (7%) Query: 98 IESSGQLSVRLEGGLLPFAGIA---FPVR-LGFHKNGYVIFTSEFLMLANEVIIEAHGAC 153 IE++ Q+ G L F +R L GY++ S + V A G Sbjct: 64 IEAAAQIMQMEAGAPLLLTTFDEAEFILRALKTGVRGYILKNSPAQRILTAVRAVAEGGT 123 Query: 154 YQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 D LE + R+ + LT RE + L +G +++EIAE+L LS TV + Sbjct: 124 V-FQQDILEYIRDRTVFPDHTIFSLLTPREMEVVALIAEGLSNKEIAERLFLSNGTVRNH 182 Query: 209 LGSATVKLDAVNRIQ-AI 225 + K +R Q A+ Sbjct: 183 ISVILEKTGLEHRTQIAV 200 >gi|218781259|ref|YP_002432577.1| LuxR family transcriptional regulator [Desulfatibacillum alkenivorans AK-01] gi|218762643|gb|ACL05109.1| transcriptional regulator, LuxR family [Desulfatibacillum alkenivorans AK-01] Length = 287 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 34/63 (53%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L+L +G+T+ EI++ L +S HTV +++ KL +R QA A + Sbjct: 225 ETLTTREIQVLRLMAEGFTNGEISDMLEISPHTVKSHVIHVFNKLGVNDRTQAAVWAAKN 284 Query: 232 GYI 234 + Sbjct: 285 NLV 287 >gi|152964708|ref|YP_001360492.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] gi|151359225|gb|ABS02228.1| two component transcriptional regulator, LuxR family [Kineococcus radiotolerans SRS30216] Length = 204 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 44/110 (40%), Gaps = 2/110 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ LA V+ + + + A LTERE L Sbjct: 96 ASGARGYLVKDVSREELATAVLQALQDVSRRRGGN--RTRAVLTGRAPVLTEREQQVLVG 153 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ EI +L LS TV + KL+A +R QA+A R+G + Sbjct: 154 MSRGRSNAEIGRELFLSEDTVKTHARRLFRKLEAADRAQAVAVGFRWGLV 203 >gi|254464109|ref|ZP_05077520.1| two component response regulator [Rhodobacterales bacterium Y4I] gi|206685017|gb|EDZ45499.1| two component response regulator [Rhodobacterales bacterium Y4I] Length = 214 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 42/111 (37%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GYV+ + + G Y L K + A LT RE + L Sbjct: 97 LSHGAMGYVLKDVPTDEIKQAIDAVMEGQTYLCTGAAGSLKPKDNGAREALTGREQTILL 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A+ L +SV TV + + KL + A+ G + Sbjct: 157 ELAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207 >gi|300723547|ref|YP_003712852.1| response regulator in two-component regulatory system with NarQ [Xenorhabdus nematophila ATCC 19061] gi|297630069|emb|CBJ90706.1| response regulator in two-component regulatory system with NarQ (or NarX), regulates anaerobic respiratory gene expression [Xenorhabdus nematophila ATCC 19061] Length = 211 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEV--IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCL 182 NGY++ E L + + I+ H + + +L LT+RE L Sbjct: 97 DAGANGYLLKDIELDPLLSNIKKAIDGHAVFSEKVHQYLSTRHLYIDPLSKLTKRELDVL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + +G T++EIA+ L +S TV + + KL + +R++A Sbjct: 157 KEISEGMTNKEIADFLFISEETVKVHTRNLLKKLKSRSRLEA 198 >gi|325291913|ref|YP_004277777.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] gi|325059766|gb|ADY63457.1| transcriptional regulator, LuxR family [Agrobacterium sp. H13-3] Length = 251 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LTERE CL +G TS+EIA LG+S +T+N Y+ S K R +AIA A+R Sbjct: 190 DLTERELECLFWIAEGKTSDEIAMILGISRNTINNYITSVMRKTATKTRSEAIAYAVRNN 249 Query: 233 YI 234 + Sbjct: 250 LV 251 >gi|300932860|ref|ZP_07148116.1| two-component system response regulator [Corynebacterium resistens DSM 45100] Length = 252 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 48/143 (33%), Gaps = 33/143 (23%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE---AHGACYQVITDFLELFKKRSSA------------ 170 +G+++ + L V A + + + Sbjct: 103 AGASGFLLKDVDPEELIKAVRTVGESAAVISPAATAKLMRHLRAEGAEEGQNVASKSKED 162 Query: 171 ------------------ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSA 212 LT RE L L G++++EIAE+L +S+ TV ++G Sbjct: 163 GGEPRDIIKPSLDDDLGLVDPLTPREREILCLVATGHSNQEIAEELFISLPTVKTHVGRV 222 Query: 213 TVKLDAVNRIQAIAKAIRFGYIC 235 K + +R+ A+ A++ + Sbjct: 223 LTKTGSRDRVHAVLFALKHHLVS 245 >gi|144898194|emb|CAM75058.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum gryphiswaldense MSR-1] Length = 209 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLTERET 179 L +GY + L + + G Y +EL ++ + +LT RE Sbjct: 94 LAAGADGYALKRLGHEELMSAINSVRMGRQYLGPGLDVELVREHLDGGEANVPSLTAREM 153 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G + EIA+ L +++ TV + KLD N + AIR G I Sbjct: 154 EVLRLIAQGLKNREIADTLSIAIKTVETHRTKIMQKLDLHNSAELATYAIRRGLI 208 >gi|158315976|ref|YP_001508484.1| LuxR family GAF modulated transcriptional regulator [Frankia sp. EAN1pec] gi|158111381|gb|ABW13578.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 285 Score = 91.6 bits (226), Expect = 8e-17, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 5/105 (4%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN-----LTERETSCLQLAGDGY 189 +E L+ + A + D LE ++ L+ RE L+L +G Sbjct: 180 DAELEELSYQAGDPALRERIVAVRDLLEDLFPDTAPPTRAQPFGLSPRELDVLRLVAEGM 239 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ E A +L +S TV AYL S KL NR A+ A R + Sbjct: 240 SNAETARRLAVSPETVKAYLRSIMNKLGVHNRTAAVNVARRSSLL 284 >gi|269959807|ref|ZP_06174185.1| nitrate/nitrite response regulator NarP [Vibrio harveyi 1DA3] gi|269835420|gb|EEZ89501.1| nitrate/nitrite response regulator NarP [Vibrio harveyi 1DA3] Length = 204 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 5/112 (4%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ +E L E++ +AH A Q + +L + + LT+RET LQ Sbjct: 93 GADGYLLKDTEPDELV-ELLKQAHEGDKAYSQAVAKYLNEREGQEDVFDTLTDRETQILQ 151 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234 G+ +++IA++L +S TV ++ S KL +R A + RFG I Sbjct: 152 EVARGFRNKQIADRLFISESTVKVHMKSLLKKLKVPSRTAATVLYLERFGEI 203 >gi|67641422|ref|ZP_00440201.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|126444300|ref|YP_001063145.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126447142|ref|YP_001077967.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|126456927|ref|YP_001076095.1| LuxR family DNA-binding response regulator [Burkholderia pseudomallei 1106a] gi|134281974|ref|ZP_01768680.1| BipB protein [Burkholderia pseudomallei 305] gi|166999878|ref|ZP_02265708.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|167725537|ref|ZP_02408773.1| DNA-binding response regulator [Burkholderia pseudomallei DM98] gi|167743182|ref|ZP_02415956.1| DNA-binding response regulator [Burkholderia pseudomallei 14] gi|167820355|ref|ZP_02452035.1| DNA-binding response regulator [Burkholderia pseudomallei 91] gi|167828726|ref|ZP_02460197.1| DNA-binding response regulator [Burkholderia pseudomallei 9] gi|167850181|ref|ZP_02475689.1| DNA-binding response regulator [Burkholderia pseudomallei B7210] gi|167898791|ref|ZP_02486192.1| DNA-binding response regulator [Burkholderia pseudomallei 7894] gi|167907119|ref|ZP_02494324.1| DNA-binding response regulator [Burkholderia pseudomallei NCTC 13177] gi|167915473|ref|ZP_02502564.1| DNA-binding response regulator [Burkholderia pseudomallei 112] gi|167923317|ref|ZP_02510408.1| DNA-binding response regulator [Burkholderia pseudomallei BCC215] gi|217425144|ref|ZP_03456639.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 576] gi|226196039|ref|ZP_03791625.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|237507699|ref|ZP_04520414.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|242312836|ref|ZP_04811853.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|254176376|ref|ZP_04883034.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|254185184|ref|ZP_04891773.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1655] gi|254186839|ref|ZP_04893355.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|254204939|ref|ZP_04911292.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|254263032|ref|ZP_04953897.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710a] gi|254301472|ref|ZP_04968916.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 406e] gi|126223791|gb|ABN87296.1| DNA-binding response regulator [Burkholderia pseudomallei 668] gi|126230695|gb|ABN94108.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106a] gi|126239996|gb|ABO03108.1| DNA-binding response regulator [Burkholderia mallei NCTC 10247] gi|134246503|gb|EBA46591.1| BipB protein [Burkholderia pseudomallei 305] gi|147754525|gb|EDK61589.1| DNA-binding response regulator [Burkholderia mallei JHU] gi|157811119|gb|EDO88289.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 406e] gi|157934523|gb|EDO90193.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pasteur 52237] gi|160697418|gb|EDP87388.1| DNA-binding response regulator [Burkholderia mallei ATCC 10399] gi|184215776|gb|EDU12757.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1655] gi|217391749|gb|EEC31776.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 576] gi|225931932|gb|EEH27933.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei Pakistan 9] gi|234999904|gb|EEP49328.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei MSHR346] gi|238522359|gb|EEP85804.1| DNA-binding response regulator [Burkholderia mallei GB8 horse 4] gi|242136075|gb|EES22478.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1106b] gi|243064182|gb|EES46368.1| DNA-binding response regulator [Burkholderia mallei PRL-20] gi|254214034|gb|EET03419.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei 1710a] Length = 214 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 8/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KKRSSAARNLTERE 178 F +GY++ + + G + E + +S LT RE Sbjct: 93 FGASGYLLKWCSPDGIVQAIRRVMAGRV-HIDPSLDEARVASAAGGRTLASPVDELTRRE 151 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L DG + EIA L +S TV+ + KL A N I A R+GY Sbjct: 152 KQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHWAYRYGY 206 >gi|294054984|ref|YP_003548642.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] gi|293614317|gb|ADE54472.1| two component transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 215 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 58/137 (42%), Gaps = 10/137 (7%) Query: 109 EGGLLPFAGIAFP--VR--LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVIT 158 + +L F+G P VR L +G+V + L + I + G Y ++ Sbjct: 75 DARVLIFSGYQTPGLVRELLQAGAHGFVEKAAPLTELRKGIEIVSSGGSYFGPEVALLLR 134 Query: 159 DFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 D + K + S LT+RE LQL + ++ EIA KL +SV T + + KLD Sbjct: 135 DAMADPKSKESGINILTKRERQILQLIAESNSTREIASKLDISVKTAENHRTNLMRKLDL 194 Query: 219 VNRIQAIAKAIRFGYIC 235 + AI G I Sbjct: 195 HDVASLTRYAINHGLIV 211 >gi|239983191|ref|ZP_04705715.1| two component LuxR family transcriptional regulator [Streptomyces albus J1074] Length = 326 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 11/119 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-----------QVITDFLELFKKRSSAARNL 174 G ++ + + + V A G + + +L ++ L Sbjct: 125 AGARGLLLKSGGQEAILSGVRDVAAGGIAMSTEFVSQILKALHSAYLPAAERPFRDISLL 184 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE +L G T+++I+ +L LS TV ++ KLD NR+ A+ A G Sbjct: 185 TPREMQVFRLVSQGLTNQQISNRLVLSEATVKSHFNRICHKLDLRNRVDAVILAYETGI 243 >gi|197121316|ref|YP_002133267.1| LuxR family transcriptional regulator [Anaeromyxobacter sp. K] gi|196171165|gb|ACG72138.1| two component transcriptional regulator, LuxR family [Anaeromyxobacter sp. K] Length = 208 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 35/63 (55%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G ++ IA +LG+S HT ++ + KL A +R +AI +A R G Sbjct: 145 PLTPREREVLALVAEGLGNKAIAARLGISEHTAKFHVNAILGKLGAGSRAEAIVRAARLG 204 Query: 233 YIC 235 + Sbjct: 205 LVV 207 >gi|329667775|gb|AEB93723.1| two-component system response regulator [Lactobacillus johnsonii DPC 6026] Length = 224 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 13/122 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK----------RSSA 170 L + +GY++ L + A G + LF K Sbjct: 94 LKYGASGYLLKGGSPADLFTAIRTVAQGGAMINPDITEKVFRLFSKMAQSNYTISVNDKE 153 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++ + E +Q G G +++EIA KL LS TV Y+ KLD +R Q A++ Sbjct: 154 TKDFSRSEWCVIQQVGLGLSNKEIATKLFLSEGTVRNYISKILEKLDLRDRTQLAIWAVQ 213 Query: 231 FG 232 G Sbjct: 214 TG 215 >gi|330502102|ref|YP_004378971.1| regulatory protein LuxR [Pseudomonas mendocina NK-01] gi|328916388|gb|AEB57219.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01] Length = 868 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 27/79 (34%), Positives = 42/79 (53%) Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 ++ L + S+ L+ RE + LQL GY+++EIA++L +S+HTV + V Sbjct: 787 RLFEPAPRLDEPASAGTALLSSRELAVLQLIAQGYSNQEIADRLFISLHTVKTHARRINV 846 Query: 215 KLDAVNRIQAIAKAIRFGY 233 KL R QA+A A G Sbjct: 847 KLGVQRRTQAVAMAKAQGL 865 >gi|330467590|ref|YP_004405333.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328810561|gb|AEB44733.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 239 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 33/167 (19%), Positives = 63/167 (37%), Gaps = 19/167 (11%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIA----FPVRLGFHKNGYVIFTSEFLMLA 142 + W+ T+ + E ++ +G P L Y+ + L Sbjct: 52 VDWELAGPTTLDMVGALRTHAPESRIVVLSGRDDPRIVPELLALGVRAYLSKSVTSDELL 111 Query: 143 NEVIIEA--HGACYQVITDFLELF-------------KKRSSAARNLTERETSCLQLAGD 187 + + G + +++ + + + L+ERE L LA + Sbjct: 112 ATIRSVSREEGRVHLILSAGRRPVVPGGGEFPRERGGSRAAPHSVRLSEREHDVLSLAAE 171 Query: 188 GYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ +IA +L +S TV ++ KL+AV+RI A+ KAI I Sbjct: 172 ALSNSQIARRLYISEGTVKRHMRHVFKKLNAVSRIDAVNKAISAALI 218 >gi|241518365|ref|YP_002978993.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862778|gb|ACS60442.1| two component transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 203 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 47/104 (45%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GYV+ LA + A G+ Y T ++ K +LT RET ++ Sbjct: 95 LRQGAAGYVVKGIGSRGLAEAIRTVAGGSRYISPTMRSKVEKSLFDRPASLTARETEVIE 154 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L +G ++++I +L L T+ ++ KL A NR +A + Sbjct: 155 LVAEGLSNKQIGRRLNLQEKTIKHHMTEILSKLGASNRTEAAIR 198 >gi|106879460|emb|CAJ20013.1| putative DNA binding regulatory protein [Streptomyces cattleya] Length = 225 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 33/68 (48%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L+L G ++ EIA L L TV +++ KL NR QAIA Sbjct: 151 APGVPGLTGRELEVLRLMAAGMSNAEIAGHLSLGEATVKSHVSRLLGKLGLRNRSQAIAC 210 Query: 228 AIRFGYIC 235 A R G + Sbjct: 211 AYRTGLVT 218 >gi|293605268|ref|ZP_06687654.1| nitrate/nitrite response regulator protein NarL [Achromobacter piechaudii ATCC 43553] gi|292816324|gb|EFF75419.1| nitrate/nitrite response regulator protein NarL [Achromobacter piechaudii ATCC 43553] Length = 221 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFK---------KRSSAA 171 L GY++ + +L + + A G + ++ F+ K + Sbjct: 95 LRDGARGYLVKNIDAEVLTSAIRRAAAGESVIAESMTAKLVDQFRGQASLAAQGKSPAER 154 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RET +Q G +++ IA +L +S TV ++ + KL+ +R+Q A+ Sbjct: 155 HRLTARETQIVQCLARGASNKVIARELDVSESTVKIHVQNVLKKLNLTSRVQVAVYAVEH 214 Query: 232 GY 233 G Sbjct: 215 GL 216 >gi|226356513|ref|YP_002786253.1| DNA-binding response regulator [Deinococcus deserti VCD115] gi|226318503|gb|ACO46499.1| putative DNA-binding response regulator [Deinococcus deserti VCD115] Length = 216 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 12/115 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 Y++ + LA+ + A G A +++ DF + +LT +E Sbjct: 101 AGAISYMLKDASSDTLADAIHAAARGEVRLHPEAARRLVRDF-----RSPEMRESLTPKE 155 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T LQL G ++ +IA+ G+S TV ++ KL +R QA A+R G Sbjct: 156 TIVLQLIARGCSNRDIAQDQGVSEATVKTHVSRLLSKLGLESRTQAALYALRHGI 210 >gi|134098243|ref|YP_001103904.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291004336|ref|ZP_06562309.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133910866|emb|CAM00979.1| two component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 218 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 11/119 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA----RNL 174 +G+++ + L N + + A G ++++ F + R A L Sbjct: 96 AGASGFLLKDARPEELINAIRVIADGDAMLSPSVTRRLLSHFADRNSPRGPTAVRGLDEL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L L G G ++ IA+ LG + TV ++ +KLD NR+Q A G Sbjct: 156 TPRERQILSLVGGGLSNASIAKTLGATESTVKGHVSRLLMKLDCENRVQLALIAHNAGI 214 >gi|9297035|sp|O54452|RAIR_RHIET RecName: Full=Transcriptional activator protein raiR gi|2897879|gb|AAC38173.1| RaiR [Rhizobium etli] Length = 242 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 68/201 (33%), Gaps = 17/201 (8%) Query: 36 YTINSALDFPRRQQLICELHNYDLDSGDIPNILIETY-------GDDFLFHFNSGLLPII 88 + + A P L + L P ++ Y D + G LP+ Sbjct: 37 HLCDIAYGSPC--DLAGATDSNPLLMLTYPPEWVKQYRDRDYFSIDPVVRLGRRGFLPVE 94 Query: 89 WQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSE-----FLMLAN 143 W + ++ + + G+ PVR + TS + Sbjct: 95 WSASGWDS--GRAYGFFKEAMAFGVGRQGVTLPVRGPQGERSLFTVTSNHPDAYWRQFRM 152 Query: 144 EVIIEAHGACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSV 202 + + + + + + L R A L+ RE CL++ +G +++I +L +SV Sbjct: 153 DSMRDLQFLAHHLHDRAMVLSGMRKVADLPRLSRRELQCLEMTANGLLAKQICARLSISV 212 Query: 203 HTVNAYLGSATVKLDAVNRIQ 223 V YL SA KL + Sbjct: 213 SAVQLYLASARRKLTVATTSE 233 >gi|329934424|ref|ZP_08284503.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|329306020|gb|EGG49875.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] Length = 227 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKR------SSA 170 L +G+++ L + + + A G A ++I + R +A Sbjct: 95 LRAGASGFLLKDVHAAELLSGIRVVASGESVLAPSATRRLIGHYASGPGVRTPDPEAPAA 154 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L+L G T+ EIA LG++V TV +++ + KL+ +R+QA A Sbjct: 155 LETLTAREHDVLRLIASGLTNAEIAGHLGIAVGTVKSHVNAVLRKLELRDRVQATILAYD 214 Query: 231 FGY 233 G Sbjct: 215 LGL 217 >gi|292670350|ref|ZP_06603776.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541] gi|292648081|gb|EFF66053.1| nitrate/nitrite response regulator [Selenomonas noxia ATCC 43541] Length = 223 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 15/127 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEV-------------IIEAHGACYQVITDFLELFKK--RS 168 L GY++ E +L + + E V D + K+ Sbjct: 95 LKNGALGYLLKDVEPSVLIKAIHMVNEGNPFVYPKLAERLFGSTAVYGDVSRMAKEIWDE 154 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT RE L G+++++I + LGLS TV +L S KL +R QA+ Sbjct: 155 SRGERLTPREMDVLGCIAKGFSNQDIGKALGLSEKTVKNHLTSIFHKLKVNDRTQALVYV 214 Query: 229 IRFGYIC 235 ++ + Sbjct: 215 LKNKIVT 221 >gi|108805731|ref|YP_645668.1| LuxR family transcriptional regulator [Rubrobacter xylanophilus DSM 9941] gi|108766974|gb|ABG05856.1| transcriptional regulator, LuxR family [Rubrobacter xylanophilus DSM 9941] Length = 781 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 38/70 (54%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++R A LT RE L+L G+G T ++A +L +S TVNA+L S KL +R A Sbjct: 711 EERGPAGAPLTPRELEVLRLVGEGMTDAQVAGRLFVSTRTVNAHLRSILRKLGVRSRAAA 770 Query: 225 IAKAIRFGYI 234 + A G + Sbjct: 771 VRLAQERGLL 780 >gi|327390805|gb|EGE89145.1| bacterial regulatory s, luxR family protein [Streptococcus pneumoniae GA04375] Length = 72 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE LQL GY ++ IA+ L +S+ TV ++ + KL+ +R QA A + Sbjct: 4 HEELTARERDVLQLIAKGYENQRIADDLFISLKTVKTHVSNILAKLEVSDRTQAAVYAFQ 63 Query: 231 FGYI 234 + Sbjct: 64 HHLV 67 >gi|312131668|ref|YP_003999008.1| two component transcriptional regulator, luxr family [Leadbetterella byssophila DSM 17132] gi|311908214|gb|ADQ18655.1| two component transcriptional regulator, LuxR family [Leadbetterella byssophila DSM 17132] Length = 214 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 50/113 (44%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSAARN-----LTERE 178 +GY++ +E + G + L+LF++ + LTE+E Sbjct: 97 GASGYLLKNAEPATYVKAIEEVYEGGSPMTPGIARRVLQLFREGYTPPTPKEDFNLTEQE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G + + IA+ L +S+ TV +L + +KL + +A+AKA++ Sbjct: 157 RKVLHYLVAGKSYKMIADVLFISLETVKTHLRNIYLKLQVHSGTEAVAKALKH 209 >gi|260426271|ref|ZP_05780250.1| transcriptional regulatory protein DegU [Citreicella sp. SE45] gi|260420763|gb|EEX14014.1| transcriptional regulatory protein DegU [Citreicella sp. SE45] Length = 214 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 40/111 (36%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 LG GYV+ + + G Y L + LT RE L Sbjct: 97 LGHGAMGYVLKDVPTDEVKRAIDAVMAGERYLCTGAEGALRPVMTGGREQLTNREQMVLL 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A+ L +SV TV + + KL + A+ G + Sbjct: 157 QLAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207 >gi|260433411|ref|ZP_05787382.1| DNA-binding response regulator, LuxR family [Silicibacter lacuscaerulensis ITI-1157] gi|260417239|gb|EEX10498.1| DNA-binding response regulator, LuxR family [Silicibacter lacuscaerulensis ITI-1157] Length = 214 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 41/111 (36%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY++ + + G Y L K S LT RE + L Sbjct: 97 LSHGAKGYILKDVPTDEIKQAIDAVMRGERYLCTGASGSLEPKGDSTREALTGREQTILL 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A+ L +SV TV + + KL + A+ G + Sbjct: 157 ELAQGKSNKEVAQTLDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207 >gi|117927404|ref|YP_871955.1| two component LuxR family transcriptional regulator [Acidothermus cellulolyticus 11B] gi|117647867|gb|ABK51969.1| two component transcriptional regulator, LuxR family [Acidothermus cellulolyticus 11B] Length = 205 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +G+++ + L + V A G Q + D ++ A LT RE L A Sbjct: 100 AGVSGFLVKDAPVERLVDAVRRVAAG---QRVVDPELAAATLAAGANPLTAREQEVLAAA 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T +IA +L LS TV YL +A K A NRI+A+ A G++ Sbjct: 157 RGGATIADIAGRLFLSEGTVRNYLSAAIAKTGARNRIEALRVAEENGWL 205 >gi|323700520|ref|ZP_08112432.1| two component transcriptional regulator, LuxR family [Desulfovibrio sp. ND132] gi|323460452|gb|EGB16317.1| two component transcriptional regulator, LuxR family [Desulfovibrio desulfuricans ND132] Length = 216 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 43/117 (36%), Gaps = 7/117 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-------RSSAARNLTERE 178 +G+V+ L V G Y D L ++ R +L+ RE Sbjct: 99 AGISGHVLKEGPPADLCAAVEAVMAGKTYFTTIDPAALLRQLSPERSGREDLFDHLSPRE 158 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +L DG T +E A +L +S TV + + KL+ AIR G I Sbjct: 159 LEVFRLLADGLTVKEAAAELHISPKTVETHKYNLMEKLEVGTIPDLTKLAIRHGLIS 215 >gi|323492987|ref|ZP_08098124.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323312766|gb|EGA65893.1| LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 212 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 47/113 (41%), Gaps = 4/113 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR----SSAARNLTERETSCL 182 GY++ + + G+ Y + LF + SS L+ RE + L Sbjct: 100 GAVGYMLKEICARRMVQAIKTVYQGSTYFCESVTQTLFSQEVIPSSSKPNPLSRREEAIL 159 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +L +G +S+E+A L +S TV + + KLD + + A+ G + Sbjct: 160 KLVAEGKSSKEVASILNISYRTVETHRQNIKHKLDLHSTAELAKYAVEKGIVT 212 >gi|299137741|ref|ZP_07030922.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] gi|298600382|gb|EFI56539.1| two component transcriptional regulator, LuxR family [Acidobacterium sp. MP5ACTX8] Length = 212 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 2/111 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GY+I L + G ++ + + +L++RE LQ Sbjct: 102 LEAGAQGYLIKGMPHDALVKALYRVHAG--HRFLPQVVSQALSSRVPGSHLSQREQEVLQ 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++ EIAE+L + TV +++ ++L+ +R QA+ + ++ G + Sbjct: 160 LLFAGKSNREIAEELAIKEATVKSHVSVILMRLNVSDRTQAVVEGLKRGLV 210 >gi|297162582|gb|ADI12294.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 235 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L +G+++ LA V + G + +E F S+ A Sbjct: 102 LSVGASGFLLKDVTPEHLAAAVRLVDTGDALLAPSITRRLVERFASPSAPAPAQHADLAA 161 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE L G G ++ E+A +L LS TV +++ KL +R QA+ A G Sbjct: 162 LTPRELEVPGLLGRGLSNAELAVELTLSEATVKSHVARIFAKLALRDRAQAVVLAYETGL 221 Query: 234 I 234 + Sbjct: 222 V 222 >gi|297627348|ref|YP_003689111.1| Two component transcriptional regulator, LuxR family [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296923113|emb|CBL57700.1| Two component transcriptional regulator, LuxR family [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 220 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-----------QVITDFLELFKKRSSAAR 172 L +G+++ + L + + A G V + + Sbjct: 97 LKAGASGFLLKDTRPADLLSAIRAVAAGDSVVAPSATRRLLDHVAPTLPDHVGEPDERLD 156 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT+RE L G T+ EIA L ++ TV ++G KL +R+ + A G Sbjct: 157 VLTDREREVLVEVAKGATNAEIATNLFMAEGTVKTHIGRLLAKLHCRDRVGLVLFAYETG 216 Query: 233 Y 233 Sbjct: 217 L 217 >gi|254388484|ref|ZP_05003718.1| response regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|294814098|ref|ZP_06772741.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|326442500|ref|ZP_08217234.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] gi|197702205|gb|EDY48017.1| response regulatory protein [Streptomyces clavuligerus ATCC 27064] gi|294326697|gb|EFG08340.1| putative two-component system response regulator [Streptomyces clavuligerus ATCC 27064] Length = 207 Score = 91.6 bits (226), Expect = 9e-17, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 1/111 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-CYQVITDFLELFKKRSSAARNLTERETSCLQL 184 GY++ L + A G + + R +LTERE L Sbjct: 97 AGATGYLLKAERPEELFAAIRAAAQGRTALSAPVATRVMDRMRGGGRPSLTERELDILGQ 156 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G + EIA L +S TV +LG KL R A++ A + Sbjct: 157 LARGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVSVAKEQRLLS 207 >gi|328755742|gb|EGF69358.1| response regulator receiver domain protein [Propionibacterium acnes HL087PA1] Length = 206 Score = 91.2 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 3/109 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 + G+++ + LA V+ + H + + L+ RE L+ Sbjct: 99 MDAGVAGFLVKDTPAEDLAQ-VVRKVHAGGRAIDPALAA--ESLIEGHNPLSGREREILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LA G + IA +L LSV TV ++ SA K A NR +A A R G Sbjct: 156 LAESGASISLIASELCLSVGTVRNHVSSAIGKTGAANRTEAAVTARRRG 204 >gi|313895153|ref|ZP_07828710.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 137 str. F0430] gi|320529859|ref|ZP_08030936.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas artemidis F0399] gi|312976048|gb|EFR41506.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas sp. oral taxon 137 str. F0430] gi|320137877|gb|EFW29782.1| putative nitrate/nitrite response regulator protein NarL [Selenomonas artemidis F0399] Length = 223 Score = 91.2 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 15/127 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEV-------------IIEAHGACYQVITDFLELFKK--RS 168 L GY++ E +L + + E V D + K+ Sbjct: 95 LKNGALGYLLKDVEPNVLIKAIHMVNEGNPFVYPKLAERLFGSTAVYGDVSRMAKEIWDE 154 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S LT RE L G ++++I + LGLS TV +L S KL +R QA+ Sbjct: 155 SRGERLTPREMDVLGCIAKGLSNQDIGKALGLSEKTVKNHLTSIFHKLKVNDRTQALVYV 214 Query: 229 IRFGYIC 235 ++ + Sbjct: 215 LKNKIVT 221 >gi|317128933|ref|YP_004095215.1| LuxR family transcriptional regulator [Bacillus cellulosilyticus DSM 2522] gi|315473881|gb|ADU30484.1| transcriptional regulator, LuxR family [Bacillus cellulosilyticus DSM 2522] Length = 708 Score = 91.2 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 38/69 (55%) Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 K + + L++RE L L GY++ +IA L +S HTV ++ KLD +R QA Sbjct: 636 KSKITEDLKLSKRELDVLDLVLKGYSNSDIANTLFISDHTVKNHMTKILQKLDCTDRSQA 695 Query: 225 IAKAIRFGY 233 IAK + GY Sbjct: 696 IAKVYQMGY 704 >gi|328882053|emb|CCA55292.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 201 Score = 91.2 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ LA V G + D + LT RE L A Sbjct: 96 AGAAGFLVKDGPVEELAEAVRKALRGET---VIDPALAAAALGAGPNPLTARERDALAAA 152 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T +IA L LS TV YL SA K NR++A+ A + G++ Sbjct: 153 VDGATIADIAAALHLSESTVRNYLSSAIGKTGTRNRMEAVRAARQQGWL 201 >gi|325675545|ref|ZP_08155229.1| two component system response regulator [Rhodococcus equi ATCC 33707] gi|325553516|gb|EGD23194.1| two component system response regulator [Rhodococcus equi ATCC 33707] Length = 224 Score = 91.2 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 47/117 (40%), Gaps = 11/117 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN--------L 174 GYV T LA+ V A G ++ L+ F RS+A L Sbjct: 105 AGARGYVTKTISGAELADGVRRVAGGDAVFSPRLAGFVLDSFTGRSNAPEPPLDPELDSL 164 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T RE L+L GYT EIAE+L +SV TV + + K NR A R Sbjct: 165 TPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHRR 221 >gi|123441908|ref|YP_001005891.1| quorum-sensing transcriptional activator [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088869|emb|CAL11676.1| quorum-sensing transcriptional activator [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 244 Score = 91.2 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 74/228 (32%), Gaps = 18/228 (7%) Query: 24 IQNRIKARNFALYTINSALDFPRRQQLICE--LHNYDLDSGDIPNILIETYGDDFLFHFN 81 I+N I+ R A + + ++ + + NY LD D + Sbjct: 15 IKNYIQRRIKAYGDLRYSYLVMNKKTPLHPTIISNYPLDWVKKYKKNSYHLIDPVILTAK 74 Query: 82 SGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYV-IFTSEFLM 140 + P W + + +L G F + + + I Sbjct: 75 DKVAPFAWDDNSVINKKSTDSAV-FKLAREYNIVNGYTFVLHDNSNNMATLNISNGSDDS 133 Query: 141 LANEVIIEAHGACYQVI-----TDFLELFKKRSSAARN---------LTERETSCLQLAG 186 ++ + IE + Q++ L L++ S N + RE L A Sbjct: 134 ISFDESIEINKEKIQMLLILTHEKMLGLYQSNSDKNENRNPKIERDIFSPRENEILYWAS 193 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T EI+ LG+ TV ++G+ KL +N AI I I Sbjct: 194 VGKTYAEISIILGIKRSTVKFHIGNVVRKLGVLNAKHAIRLGIELKLI 241 >gi|323498997|ref|ZP_08103979.1| response regulator [Vibrio sinaloensis DSM 21326] gi|323315933|gb|EGA68962.1| response regulator [Vibrio sinaloensis DSM 21326] Length = 210 Score = 91.2 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ +E L + + + G A Q + +L + S LT+RE L+ Sbjct: 98 AGADGYLLKDTEPDELVDLLKLSLRGNKAYSQEVAKYLADRENSSDVFDELTDREMQILR 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234 G +++IA+ L +S TV ++ S KL +R A + R+G I Sbjct: 158 EVAKGDRNKQIADTLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERYGEI 209 >gi|297538080|ref|YP_003673849.1| two component LuxR family transcriptional regulator [Methylotenera sp. 301] gi|297257427|gb|ADI29272.1| two component transcriptional regulator, LuxR family [Methylotenera sp. 301] Length = 212 Score = 91.2 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 45/115 (39%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERET 179 L GY+ S + + + A G Y + ++ + L+ RE Sbjct: 96 LNAGAMGYLTKRSAAEEMIKAIRVVATGKKYLEASVAQQMAIQQLSGDQNPVDVLSPREF 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EIAE L LS TV +L + KL+A N + A+R G + Sbjct: 156 EVFMALAKGKTTNEIAETLFLSPRTVGTHLYNIKQKLNANNSAEIALIAMRSGLL 210 >gi|23015369|ref|ZP_00055147.1| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 209 Score = 91.2 bits (225), Expect = 9e-17, Method: Composition-based stats. Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 10/118 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L +GY + L + G Y ++ ++LE A LT Sbjct: 94 LTAGADGYALKKLGHGELMAAINAVCAGKTYLGPGLSEDLVKEYLEGSDLGGGA---LTA 150 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE LQL G + EIA++LG+++ TV + KLD N + A AIR G I Sbjct: 151 REREVLQLIARGNKNREIADELGIAIKTVETHRTKIMQKLDLHNSAELAAYAIRRGLI 208 >gi|254820486|ref|ZP_05225487.1| NarL_1 [Mycobacterium intracellulare ATCC 13950] Length = 217 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA---CYQVITDFL-ELFKKRSSAARNLTERET 179 L G+V+ S + V+ A G ++ E+ ++ +A L+ RE Sbjct: 102 LQQGAAGFVLKDSTRGEIVKAVLDCAQGRDVVAPALVGGLAAEIRQRAEPSAPVLSARER 161 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G + IA +L ++ TV ++ KL +R A+A+A+R G + Sbjct: 162 EVLNRIARGQSIPTIAGELYVAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRQGLL 216 >gi|156976607|ref|YP_001447513.1| transcriptional dual regulator NarL [Vibrio harveyi ATCC BAA-1116] gi|156528201|gb|ABU73286.1| hypothetical protein VIBHAR_05381 [Vibrio harveyi ATCC BAA-1116] Length = 204 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 5/112 (4%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ +E L + ++ +AH A Q + +L + + LT+RET LQ Sbjct: 93 GADGYLLKDTEPDELVD-LLKQAHEGDKAYSQAVAKYLNEREGQEDVFDTLTDRETQILQ 151 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234 G+ +++IA++L +S TV ++ S KL +R A + RFG I Sbjct: 152 EVARGFRNKQIADRLFISESTVKVHMKSLLKKLKVPSRTAATVLYLERFGEI 203 >gi|121053812|gb|ABM47010.1| response regulator [Amycolatopsis orientalis] Length = 222 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAAR---N 173 L GY+ ++ + V A G +V+ L + N Sbjct: 100 LEAGALGYLTKSANKHEIGRAVHAAAAGQALLDPQVQRRVLGAALTSAPASAPPPEDDAN 159 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L G++++EIA +L +S TV +++ K + +R QA+ A + GY Sbjct: 160 LTKREAHVLTLIAAGHSNKEIAAELFVSETTVKSHINRIFAKTGSRDRAQAVRYAYQAGY 219 Query: 234 I 234 + Sbjct: 220 V 220 >gi|120601720|ref|YP_966120.1| two component LuxR family transcriptional regulator [Desulfovibrio vulgaris DP4] gi|120561949|gb|ABM27693.1| two component transcriptional regulator, LuxR family [Desulfovibrio vulgaris DP4] Length = 216 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 8/119 (6%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNL- 174 L +GY++ + +L + G Y +I DFL ++ ++ +L Sbjct: 94 TLSAGADGYLLKNASRDILFQAMQTVLAGRRYISPEISDLLIDDFLRHGRRDEASMLDLL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 ++RE L+L +G+ ++ +AEKL +S TV + + KL + + + AI G Sbjct: 154 SDREKQVLKLVAEGHGNKAVAEKLCISHKTVEKHKANLKRKLGTASTAELVTFAIEHGL 212 >gi|90410965|ref|ZP_01218979.1| putative nitrate/nitrite response regulator protein [Photobacterium profundum 3TCK] gi|90328178|gb|EAS44489.1| putative nitrate/nitrite response regulator protein [Photobacterium profundum 3TCK] Length = 194 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L + + G A ++ + LE ++ +LT+RET L Sbjct: 83 AAGADGYLLKDTEPDELISLLKQALCGGKAYSNIVREHLESNTEQDCLLSSLTDRETQIL 142 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q GY +++IA+ L +S TV ++ S KL +R A Sbjct: 143 QEVAKGYRNKQIADALFISEATVKVHMKSLLKKLQVKSRTAATV 186 >gi|312140819|ref|YP_004008155.1| luxr family two component system response regulator [Rhodococcus equi 103S] gi|311890158|emb|CBH49476.1| LuxR family two component system response regulator [Rhodococcus equi 103S] Length = 224 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 47/117 (40%), Gaps = 11/117 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN--------L 174 GYV T LA+ V A G ++ L+ F RS+A L Sbjct: 105 AGARGYVTKTISGAELADGVRRVAGGDAVFSPRLAGFVLDSFTGRSNAPEPPLDPELDSL 164 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T RE L+L GYT EIAE+L +SV TV + + K NR A R Sbjct: 165 TPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHRR 221 >gi|291438340|ref|ZP_06577730.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291341235|gb|EFE68191.1| regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 202 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 3/112 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ + L V GA +VI L + LTERE L Sbjct: 94 LDAQVAGFLPKDASPEELLGGVRRV--GAGRRVIDPELAMA-AWEIGDSPLTEREVEVLA 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G + +IA LSV TV YL + KL A NR+ A+ A G++ Sbjct: 151 RVAEGADTTQIAATTSLSVGTVRNYLTTIVNKLGARNRVDALRIARDNGWLA 202 >gi|302518606|ref|ZP_07270948.1| two-component system response regulator [Streptomyces sp. SPB78] gi|302427501|gb|EFK99316.1| two-component system response regulator [Streptomyces sp. SPB78] Length = 226 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 14/125 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK-------RSS 169 L G++ +E L + A G A +IT FL S+ Sbjct: 97 LRAGAAGFLGKGAEPSELLGAIRTAAAGDALLSPAATRSLITRFLAQAPGAGPAAGVDSA 156 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L G +++EIA +L +S TV ++ A K+ A +R Q + A Sbjct: 157 RLAALTGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAY 216 Query: 230 RFGYI 234 G + Sbjct: 217 ETGLV 221 >gi|149187522|ref|ZP_01865819.1| nitrate/nitrite response regulator protein [Vibrio shilonii AK1] gi|148838402|gb|EDL55342.1| nitrate/nitrite response regulator protein [Vibrio shilonii AK1] Length = 210 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ +E + + G A I +LE S LTERE LQ Sbjct: 98 AGADGYLLKDTEPDEIIELLRGLTSGNKAFSSAIEKYLEERANTSDVFATLTEREMQILQ 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234 G+ +++IA++L +S TV ++ S KL +R A I RFG I Sbjct: 158 EVAKGFRNKQIADRLFISESTVKVHMKSLLRKLQVPSRTAATILYLERFGEI 209 >gi|89056006|ref|YP_511457.1| two component LuxR family transcriptional regulator [Jannaschia sp. CCS1] gi|88865555|gb|ABD56432.1| two component transcriptional regulator, LuxR family [Jannaschia sp. CCS1] Length = 214 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSA-----ARNLTER 177 GYV+ + + ++ G + L + A A LT R Sbjct: 98 AGAKGYVLKGGDLSHIGEDIQSVLAGGSPISPSIARHLLAVLNDPRDAPAMQDAPALTNR 157 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ET L+ GY EIA +LG+S TV ++ S KL+ + I+A+A A R G + Sbjct: 158 ETEILRSVSRGYKRHEIAAQLGISAGTVGNHITSIYRKLEVSSNIEAVAIASRSGML 214 >gi|75812313|ref|YP_319932.1| two component LuxR family transcriptional regulator [Anabaena variabilis ATCC 29413] gi|75705069|gb|ABA24743.1| two component transcriptional regulator, LuxR family [Anabaena variabilis ATCC 29413] Length = 220 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 36/65 (55%) Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT+RE S L L G+++++I EKL + +TV + + KL +RI AI K Sbjct: 149 DDHLTQREISVLALIAAGFSNKQIGEKLFIGENTVKNHARNIYSKLGVDSRINAILKGSE 208 Query: 231 FGYIC 235 GYI Sbjct: 209 LGYIS 213 >gi|83312988|ref|YP_423252.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82947829|dbj|BAE52693.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 290 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 10/117 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---------SSAARNLTE 176 G++ TS ++ + + + G Y + LE SA +LT Sbjct: 168 MGAAGFIPKTSSSRVMLSALKLVLSGGVY-LPPALLEQGGPGGDDGAPVAGESAIASLTP 226 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 R+ L L G G +++EIA L L+ TV ++ + L+ NR +A+ A G Sbjct: 227 RQREVLALLGQGKSNKEIARVLELAEGTVKLHVTAILKALNVNNRTRAVVAASHLGL 283 >gi|330503565|ref|YP_004380434.1| regulatory protein LuxR [Pseudomonas mendocina NK-01] gi|328917851|gb|AEB58682.1| regulatory protein, LuxR [Pseudomonas mendocina NK-01] Length = 860 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 37/73 (50%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 E + LTERE + LA G ++EEI ++L L++ TV +L + KL NR Sbjct: 786 EARQALDVLEEGLTEREREVVCLAAKGMSNEEIGQQLSLALGTVKWHLHNIYEKLKVRNR 845 Query: 222 IQAIAKAIRFGYI 234 QAI +A + Sbjct: 846 TQAIRRARELSLL 858 >gi|297572136|ref|YP_003697910.1| LuxR family transcriptional regulator [Arcanobacterium haemolyticum DSM 20595] gi|296932483|gb|ADH93291.1| two component transcriptional regulator, LuxR family [Arcanobacterium haemolyticum DSM 20595] Length = 201 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 50/111 (45%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V+ + LA + +G +V+ L + LT+RE L+ Sbjct: 94 LAAGARGFVVKDTPAHELARAIRTVHNGG--RVVDPALA-TQSLFDGVNPLTDRERDILR 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +A +G +IA+++ LS TV +L SA K A R QA A G++ Sbjct: 151 IAEEGIPIADIAQRVFLSEGTVRNHLSSAISKTHASTRAQAAHIARERGWL 201 >gi|219850507|ref|YP_002464940.1| LuxR family two component transcriptional regulator [Chloroflexus aggregans DSM 9485] gi|219544766|gb|ACL26504.1| two component transcriptional regulator, LuxR family [Chloroflexus aggregans DSM 9485] Length = 213 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 6/118 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN---LTER 177 L +GYV+ + L + G Y + LE + L+ER Sbjct: 94 LAAGAHGYVLKRAADAELIAAIRAVLRGELYIHPALTRRLLEDILPQPQPTNPWESLSER 153 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 E L L GYT+ EIA +L LS TV Y KL +R + A+ + Sbjct: 154 EREVLVLVARGYTAAEIAGQLNLSPKTVETYRTRGMEKLGLRSRAALVQFALDHNLLV 211 >gi|83312959|ref|YP_423223.1| response regulator [Magnetospirillum magneticum AMB-1] gi|82947800|dbj|BAE52664.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magneticum AMB-1] Length = 225 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 6/117 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTERE 178 + Y + T + L + G Y V+ E SA L+ RE Sbjct: 109 ALGVDAYTLKTGGWQDLETAIGEAMAGRRYISPSAGLVVDGGEEGGLAAGSAVAPLSGRE 168 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+L +GYT++++A LG+SV TV+ + + KL + A A+R G + Sbjct: 169 RQVLKLLAEGYTNQKVAGILGISVKTVDRHRENIMNKLGVRTPVALAAIALREGLVV 225 >gi|171915529|ref|ZP_02930999.1| two component transcriptional regulator, LuxR family protein [Verrucomicrobium spinosum DSM 4136] Length = 234 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 7/111 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L +GY++ S+ + + + G +I F E K LT Sbjct: 112 LRAGAHGYLLKGSKPEDIVGGIRSASEGGAPLSQEIARLLIQSFQEPPKTEKPPIPGLTP 171 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RET L+ G +E+A +L LS TV YL KL +R +A+ K Sbjct: 172 RETQILERLAQGMVPKEVAFELSLSYETVRDYLKGVYQKLHVRSRTEAVIK 222 >gi|86740955|ref|YP_481355.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86567817|gb|ABD11626.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 224 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 6/111 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLT---ERET 179 GY++ L + A G V L ++ + R L ERE Sbjct: 111 AGAAGYLLKQIRGTDLVGAIRTIAAGRSLLDPAVTQRVLTRLREGPAEDRKLATLGERER 170 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L L +G T+ +IA ++ LS TV Y+ + KL+ +R QA A R Sbjct: 171 QILVLIAEGLTNRQIAGRIHLSEKTVKNYVSAILEKLELSSRTQAAVYATR 221 >gi|54022870|ref|YP_117112.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] gi|54014378|dbj|BAD55748.1| putative two-component system response regulator [Nocardia farcinica IFM 10152] Length = 211 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 11/117 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN--------L 174 GYV T LA+ + A G ++ L+ F RS L Sbjct: 92 AGARGYVTKTISGAELADGIRRVAGGDAVFSPRLAGFVLDSFTGRSPVPEPPLDPELDSL 151 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T RE L+L GYT EIAE L +SV TV + + K NR A R Sbjct: 152 TPRELEVLRLLARGYTYREIAETLFISVKTVETHASNVLRKTQQSNRNALTRWAHRR 208 >gi|23099565|ref|NP_693031.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] gi|22777795|dbj|BAC14066.1| transcriptional regulator [Oceanobacillus iheyensis HTE831] Length = 74 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 36/70 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + LT+RE +L T++EIA++L +S TV ++ +A KL R Sbjct: 1 MKDNEYKPKQLLTKREKEVFELLVQDKTTKEIAQELFISEKTVRNHISNAMQKLGVKGRS 60 Query: 223 QAIAKAIRFG 232 QA+ + +R G Sbjct: 61 QAVVELLRMG 70 >gi|119717344|ref|YP_924309.1| response regulator receiver [Nocardioides sp. JS614] gi|119538005|gb|ABL82622.1| response regulator receiver [Nocardioides sp. JS614] Length = 212 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 1/111 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQL 184 +G+V + + + A V + E +R + L++RE L L Sbjct: 96 AGASGFVGKEAPAQEVVRTIRHAAVSPRSFVCSGLAEAMVRRVGAGTARLSDREHDVLLL 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G + IAE+L +S T ++LG KL A NR QA+ A+R G + Sbjct: 156 LAEGLGTAAIAERLFMSESTAKSHLGHIYQKLGAANRAQALVTAMRIGLLS 206 >gi|319953755|ref|YP_004165022.1| two component transcriptional regulator, luxr family [Cellulophaga algicola DSM 14237] gi|319422415|gb|ADV49524.1| two component transcriptional regulator, LuxR family [Cellulophaga algicola DSM 14237] Length = 214 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 4/112 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLE-LFKKRSSAARNLTERETSCL 182 + +GYV +E L + G Y ++ + + +F+ + +LT+RE L Sbjct: 101 NVDGYVPKNAEKEELLTAIRSIIKGEKYFSPEIKKAYTDAMFENKKMEEISLTDREKEVL 160 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L + T++EIA+KL LS HT+ +Y + KL+ N A++ G + Sbjct: 161 KLIAEENTTQEIADKLFLSKHTIESYRKNLISKLNVKNLAGLTKHALKMGLL 212 >gi|258655123|ref|YP_003204279.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258558348|gb|ACV81290.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 209 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 1/109 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-KRSSAARNLTERETSCL 182 L +GY++ SE + + A G L +R+ LT RE L Sbjct: 98 LEAGAHGYLLKHSEPETILAAIREVASGGSPLDPKAARVLLDSRRAPQPNLLTAREEQVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 ++ DG ++ IA +LG++ TV A+L S ++ +R QA R Sbjct: 158 RMVADGLANKMIARRLGITERTVKAHLTSVYQRIGVTDRTQAALWIQRR 206 >gi|223935792|ref|ZP_03627707.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223895393|gb|EEF61839.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 225 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 6/115 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN---LTERET 179 +GY++ + + + +G ++ L F +++S N L+ RE Sbjct: 105 AGASGYLLKDASEEAITAAIHEVLNGGAPMNGRIARLVLGAFAQQNSTPHNDYGLSAREK 164 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ G +EIAE++GLS HTVN YL KL R A+AK + + Sbjct: 165 DILQYMVKGLIKKEIAEEMGLSYHTVNNYLRRIYDKLHVHTRGGAVAKTVEEKLL 219 >gi|254523232|ref|ZP_05135287.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] gi|219720823|gb|EED39348.1| two-component system regulatory protein [Stenotrophomonas sp. SKA14] Length = 216 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT-----DFLELFKKRSSAARNLTERETS 180 G+++ + L + A G + F + ERE + Sbjct: 103 AGAQGFLLKDAAPADLREAIERVAAGETLLMPVSTEPVRARYRFHDEAPPTDTFGEREVA 162 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY+++EIA L L+ TV Y+ + KL +R +A+ KAI I Sbjct: 163 ILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 216 >gi|116621985|ref|YP_824141.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116225147|gb|ABJ83856.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 216 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARN--L 174 L GY++ S + + + G + + D++ ++R R L Sbjct: 96 LKAGAKGYLLKDSMRGEVIQAIRAVSEGRSFLTKKIARIMQEDYVSRLQQRGLEDRYDLL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++RE LQ+ +G +++E+A L +S TV + KLD + + I A+R G I Sbjct: 156 SDREREVLQMIAEGRSNKEVANLLNISPTTVETHRAHILQKLDIHSVPELILYAVRKGII 215 Query: 235 C 235 Sbjct: 216 S 216 >gi|333027714|ref|ZP_08455778.1| putative two component system response regulator [Streptomyces sp. Tu6071] gi|332747566|gb|EGJ78007.1| putative two component system response regulator [Streptomyces sp. Tu6071] Length = 222 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 14/125 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKK-------RSS 169 L G++ +E L + A G A +IT FL S+ Sbjct: 93 LRAGAAGFLGKGAEPSELLGAIRTAAAGDALLSPAATRSLITRFLAQAPGAGPAAGVDSA 152 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 LT RE L G +++EIA +L +S TV ++ A K+ A +R Q + A Sbjct: 153 RLAALTGREREVLVQVAAGLSNDEIAARLEVSPLTVKTHVNRAMAKVGARDRAQLVVIAY 212 Query: 230 RFGYI 234 G + Sbjct: 213 ETGLV 217 >gi|297562938|ref|YP_003681912.1| LuxR family transcriptional regulator [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847386|gb|ADH69406.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 231 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 18/127 (14%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSS--------- 169 G+++ + L V G +++ L SS Sbjct: 96 AGAAGFLLKNTPPEELLEAVRTVHRGDSVISASSTRRLLGHVRPLLGGPSSRPVPIDGDT 155 Query: 170 --AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 A +LT RE L GYT+ EI E+L LS+ TV ++G K + +R+QA+ Sbjct: 156 RRAVASLTPREQEVLVAVALGYTNTEICERLVLSMPTVKTHVGHVLAKTGSRDRVQAVLF 215 Query: 228 AIRFGYI 234 A R G + Sbjct: 216 AFRAGLV 222 >gi|114561805|ref|YP_749318.1| two component transcriptional regulator, LuxR family protein [Shewanella frigidimarina NCIMB 400] gi|114333098|gb|ABI70480.1| two component transcriptional regulator, LuxR family [Shewanella frigidimarina NCIMB 400] Length = 209 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 9/111 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFK-------KRSSAARNLTE 176 L +GY++ +E +L ++ G ++VI+D +E + +S NLT Sbjct: 97 LRAGADGYLLKDTEPDLLLEQLKKAMLG--HRVISDEVEAYLYELKNTIDDNSWIENLTP 154 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 RE LQ +G ++ IAE L +S TV ++ + K +A +R + + Sbjct: 155 RELQILQELAEGKSNRMIAEDLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205 >gi|311896491|dbj|BAJ28899.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 225 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + A G ++ L+ F + LT+RE Sbjct: 110 GARGYVTKTITGTDLVKAIFRIADGDAVFSPRLAGFVLDAFAATDTPPVDEDLDRLTQRE 169 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 170 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 225 >gi|255067698|ref|ZP_05319553.1| nitrate/nitrite response regulator protein NarL [Neisseria sicca ATCC 29256] gi|255048039|gb|EET43503.1| nitrate/nitrite response regulator protein NarL [Neisseria sicca ATCC 29256] Length = 218 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 46/113 (40%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA-RNLTERE 178 G+++ L + + G +++ + R+ A LT RE Sbjct: 98 GARGFLLKNINADFLLDSIRKAVDGDNVFSPEMTTRLVQSLISPSAPRTDQALSTLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA A++ Sbjct: 158 LEILGYLAAGHSNKVIARHLDLAESTVKVHVQNLLRKLNLSSRVQAAVYAVQH 210 >gi|224552990|gb|ACN54746.1| PagR [Pantoea agglomerans] Length = 210 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 61/204 (29%), Gaps = 10/204 (4%) Query: 37 TINSALDFPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEET 96 + + ++ ++ N + + D+ + D + + W E Sbjct: 9 IVYAYAIMNKKDPSQMQIINNNPEWFDVYLERKYQFIDPVIIRGLRSVEDYSW----ENK 64 Query: 97 VIESSG---QLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTS--EFLMLANEVIIEAHG 151 VI S G + G FP+ + + + + Sbjct: 65 VILSEGYNLTRIFNESIQYNIYQGRTFPLHDYLNNLVLLSVIGLKDSEHDIENHRQKFIS 124 Query: 152 ACYQVITDFLELFKKRSSAARN-LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLG 210 + L L+ + L+ RE L+ G T E++ L ++ TV ++G Sbjct: 125 FLTNLHQKTLNLYSQHQQKKNVFLSPREREILKWVSAGKTYAEVSIILSIAERTVKFHMG 184 Query: 211 SATVKLDAVNRIQAIAKAIRFGYI 234 + KL N A+ + Sbjct: 185 NVMKKLGVNNARHAVKLGAELQLL 208 >gi|302868454|ref|YP_003837091.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|302571313|gb|ADL47515.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] Length = 256 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI----TDFLELFKKRSSAARNLTERET 179 L GY+ + L + V + V+ + ++ +R L+ RE Sbjct: 118 LEVGVRGYLHKSVARHDLVSAVRAVSRDRARVVLGVSRSSLDHVYGRRDEV---LSPREL 174 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G ++ +IA +L L+ TV +L + KL AV+RI A+ KA+ I Sbjct: 175 EVLAATAEGLSNAQIATRLSLAETTVKRHLRNIFAKLSAVSRIDAVNKAVAASII 229 >gi|238854471|ref|ZP_04644810.1| Two-component response regulator [Lactobacillus jensenii 269-3] gi|260665481|ref|ZP_05866328.1| two-component system response regulator [Lactobacillus jensenii SJ-7A-US] gi|282934541|ref|ZP_06339793.1| oxygen regulatory protein NreC [Lactobacillus jensenii 208-1] gi|313471834|ref|ZP_07812326.1| Two-component response regulator [Lactobacillus jensenii 1153] gi|238832898|gb|EEQ25196.1| Two-component response regulator [Lactobacillus jensenii 269-3] gi|239530121|gb|EEQ69122.1| Two-component response regulator [Lactobacillus jensenii 1153] gi|260560749|gb|EEX26726.1| two-component system response regulator [Lactobacillus jensenii SJ-7A-US] gi|281301379|gb|EFA93671.1| oxygen regulatory protein NreC [Lactobacillus jensenii 208-1] Length = 201 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +GY++ S L + G + D + + LT+RE L+ Sbjct: 94 LAQKVDGYLLKDSPSDSLVKAIRAILEGNT---VFDPKLVSGVLNEVDNPLTKRELEILK 150 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + T++E+A++L LS TV Y+ S K +R++A+ A G+I Sbjct: 151 MLEQVATTKELAQRLFLSEGTVRNYISSILSKTGTASRLEALNLARDKGWI 201 >gi|226365679|ref|YP_002783462.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226244169|dbj|BAH54517.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 219 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 47/117 (40%), Gaps = 11/117 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN--------L 174 GYV T LA+ V A G ++ L+ F RS+A L Sbjct: 100 AGARGYVTKTISGAELADGVRRVAGGDAVFSPRLAGFVLDSFTGRSNAPEPQLDPELDSL 159 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T RE L+L GYT EIAE+L +SV TV + + K NR A R Sbjct: 160 TPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHRR 216 >gi|88196315|ref|YP_501137.1| hypothetical protein SAOUHSC_02675 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|269204023|ref|YP_003283292.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus ED98] gi|87203873|gb|ABD31683.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|262076313|gb|ACY12286.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus ED98] gi|269941974|emb|CBI50386.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus TW20] gi|302752262|gb|ADL66439.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus str. JKD6008] gi|312830737|emb|CBX35579.1| transcriptional regulatory protein degU (Protease production enhancerprotein) [Staphylococcus aureus subsp. aureus ECT-R 2] gi|329315077|gb|AEB89490.1| Oxygen regulatory protein nreC [Staphylococcus aureus subsp. aureus T0131] Length = 200 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L GY++ + L + G Y ++ +F+ + ++ + Sbjct: 77 LRNGAKGYILKNAPDEQLLLAIRTVYKGETYVDMKLTTSLVNEFVSNSNQDTANTTDPFK 136 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L GY ++EIAEKL +SV TV A+ KL ++ + + A++ Sbjct: 137 ILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKK 196 Query: 233 YI 234 + Sbjct: 197 LL 198 >gi|28378203|ref|NP_785095.1| response regulator [Lactobacillus plantarum WCFS1] gi|254556410|ref|YP_003062827.1| response regulator [Lactobacillus plantarum JDM1] gi|28271038|emb|CAD63943.1| response regulator [Lactobacillus plantarum WCFS1] gi|254045337|gb|ACT62130.1| response regulator [Lactobacillus plantarum JDM1] Length = 217 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------- 173 L Y++ +S L + A+G Y ++ ++ + S+ Sbjct: 95 LHNGAMSYIMKSSSDDELLKALKTVANGEEYVDTNIVITKSDVQQINSNGVDTNLTGYNG 154 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L++RE L GY+++EIA KL +S TV A+ + KL NR I AI Sbjct: 155 LSKREREVFPLVALGYSNKEIAAKLFISTKTVEAHKANIMRKLALNNRADLIRYAIHHHL 214 Query: 234 I 234 I Sbjct: 215 I 215 >gi|15925381|ref|NP_372915.1| response regulators of two-component regulatory [Staphylococcus aureus subsp. aureus Mu50] gi|15927969|ref|NP_375502.1| hypothetical protein SA2179 [Staphylococcus aureus subsp. aureus N315] gi|21284042|ref|NP_647130.1| hypothetical protein MW2313 [Staphylococcus aureus subsp. aureus MW2] gi|49487173|ref|YP_044394.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57650934|ref|YP_187192.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus COL] gi|87162341|ref|YP_494972.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|148268828|ref|YP_001247771.1| two component LuxR family transcriptional regulator [Staphylococcus aureus subsp. aureus JH9] gi|150394900|ref|YP_001317575.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|151222503|ref|YP_001333325.1| transcriptional regulator DegU family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156980706|ref|YP_001442965.1| hypothetical protein SAHV_2375 [Staphylococcus aureus subsp. aureus Mu3] gi|161510583|ref|YP_001576242.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141331|ref|ZP_03565824.1| transcriptional regulator [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253314728|ref|ZP_04837941.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253730063|ref|ZP_04864228.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253734193|ref|ZP_04868358.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|255007165|ref|ZP_05145766.2| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794731|ref|ZP_05643710.1| transcriptional regulator [Staphylococcus aureus A9781] gi|258407411|ref|ZP_05680554.1| transcriptional regulator [Staphylococcus aureus A9763] gi|258422261|ref|ZP_05685173.1| response regulator receiver [Staphylococcus aureus A9719] gi|258439653|ref|ZP_05690399.1| transcriptional regulator [Staphylococcus aureus A9299] gi|258442790|ref|ZP_05691350.1| transcriptional regulator [Staphylococcus aureus A8115] gi|258446510|ref|ZP_05694665.1| response regulator receiver [Staphylococcus aureus A6300] gi|258450373|ref|ZP_05698465.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224] gi|258451304|ref|ZP_05699337.1| transcriptional regulator [Staphylococcus aureus A5948] gi|258455251|ref|ZP_05703211.1| two component transcriptional regulator [Staphylococcus aureus A5937] gi|262048801|ref|ZP_06021682.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30] gi|262051545|ref|ZP_06023766.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3] gi|282893837|ref|ZP_06302069.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A8117] gi|282920376|ref|ZP_06328099.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A9765] gi|282928424|ref|ZP_06336025.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A10102] gi|284025411|ref|ZP_06379809.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus 132] gi|294848934|ref|ZP_06789679.1| two-component system [Staphylococcus aureus A9754] gi|295405079|ref|ZP_06814892.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819] gi|296276000|ref|ZP_06858507.1| DegU family transcriptional regulator [Staphylococcus aureus subsp. aureus MR1] gi|297209789|ref|ZP_06926185.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297244136|ref|ZP_06928026.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796] gi|300910801|ref|ZP_07128251.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304379589|ref|ZP_07362322.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|81693835|sp|Q5HDG5|NREC_STAAC RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81696270|sp|Q6G6T0|NREC_STAAS RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81704173|sp|Q7A029|NREC_STAAW RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81705142|sp|Q7A3U5|NREC_STAAN RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|81855884|sp|Q99RN8|NREC_STAAM RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|123735950|sp|Q2FEA6|NREC_STAA3 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829240|sp|A7X623|NREC_STAA1 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829241|sp|A6U4C0|NREC_STAA2 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829243|sp|A5IVH2|NREC_STAA9 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829244|sp|A6QJN1|NREC_STAAE RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829245|sp|A8Z580|NREC_STAAT RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|205829309|sp|Q2FVM7|NREC_STAA8 RecName: Full=Oxygen regulatory protein nreC; AltName: Full=Nitrogen regulation protein C gi|13702340|dbj|BAB43481.1| SA2179 [Staphylococcus aureus subsp. aureus N315] gi|14248165|dbj|BAB58553.1| response regulators of two-component regulatory [Staphylococcus aureus subsp. aureus Mu50] gi|21205485|dbj|BAB96178.1| MW2313 [Staphylococcus aureus subsp. aureus MW2] gi|49245616|emb|CAG44095.1| putative response regulator [Staphylococcus aureus subsp. aureus MSSA476] gi|57285120|gb|AAW37214.1| transcriptional regulatory protein DegU, putative [Staphylococcus aureus subsp. aureus COL] gi|87128315|gb|ABD22829.1| transcriptional regulator, DegU family [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|147741897|gb|ABQ50195.1| two component transcriptional regulator, LuxR family [Staphylococcus aureus subsp. aureus JH9] gi|149947352|gb|ABR53288.1| response regulator receiver [Staphylococcus aureus subsp. aureus JH1] gi|150375303|dbj|BAF68563.1| transcriptional regulator DegU family protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156722841|dbj|BAF79258.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160369392|gb|ABX30363.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253726276|gb|EES95005.1| transcriptional regulator [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253727888|gb|EES96617.1| transcriptional regulator [Staphylococcus aureus subsp. aureus TCH130] gi|257788703|gb|EEV27043.1| transcriptional regulator [Staphylococcus aureus A9781] gi|257840923|gb|EEV65374.1| transcriptional regulator [Staphylococcus aureus A9763] gi|257841692|gb|EEV66129.1| response regulator receiver [Staphylococcus aureus A9719] gi|257847429|gb|EEV71431.1| transcriptional regulator [Staphylococcus aureus A9299] gi|257851911|gb|EEV75845.1| transcriptional regulator [Staphylococcus aureus A8115] gi|257854578|gb|EEV77526.1| response regulator receiver [Staphylococcus aureus A6300] gi|257856465|gb|EEV79374.1| oxygen regulatory protein nreC [Staphylococcus aureus A6224] gi|257861096|gb|EEV83911.1| transcriptional regulator [Staphylococcus aureus A5948] gi|257862462|gb|EEV85230.1| two component transcriptional regulator [Staphylococcus aureus A5937] gi|259160529|gb|EEW45552.1| hypothetical protein SA930_1313 [Staphylococcus aureus 930918-3] gi|259163059|gb|EEW47620.1| hypothetical protein SAD30_0648 [Staphylococcus aureus D30] gi|282589819|gb|EFB94903.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A10102] gi|282594322|gb|EFB99308.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A9765] gi|282763895|gb|EFC04023.1| two-component system, NarL family, response regulator NreC [Staphylococcus aureus A8117] gi|285818052|gb|ADC38539.1| Two-component response regulator [Staphylococcus aureus 04-02981] gi|294824313|gb|EFG40737.1| two-component system [Staphylococcus aureus A9754] gi|294970024|gb|EFG46042.1| oxygen regulatory protein nreC [Staphylococcus aureus A8819] gi|296885462|gb|EFH24399.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297178914|gb|EFH38159.1| oxygen regulatory protein nreC [Staphylococcus aureus A8796] gi|300887781|gb|EFK82976.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus TCH70] gi|304341765|gb|EFM07671.1| LuxR family DNA-binding response regulator [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315128595|gb|EFT84599.1| transcriptional regulator [Staphylococcus aureus subsp. aureus CGS03] gi|315197413|gb|EFU27750.1| transcriptional regulator [Staphylococcus aureus subsp. aureus CGS01] gi|320139097|gb|EFW30979.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142526|gb|EFW34335.1| response regulator receiver domain protein [Staphylococcus aureus subsp. aureus MRSA177] gi|329723454|gb|EGG59983.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21172] gi|329726678|gb|EGG63139.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21189] gi|329730103|gb|EGG66493.1| oxygen regulatory protein NreC [Staphylococcus aureus subsp. aureus 21193] Length = 217 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L GY++ + L + G Y ++ +F+ + ++ + Sbjct: 94 LRNGAKGYILKNAPDEQLLLAIRTVYKGETYVDMKLTTSLVNEFVSNSNQDTANTTDPFK 153 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L GY ++EIAEKL +SV TV A+ KL ++ + + A++ Sbjct: 154 ILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKK 213 Query: 233 YI 234 + Sbjct: 214 LL 215 >gi|330947744|gb|EGH48203.1| regulatory protein, LuxR [Pseudomonas syringae pv. pisi str. 1704B] Length = 120 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ RE LQL G +++EI+E+L +S+HTV + KL R QA+A+A G Sbjct: 59 LSVRELGVLQLIAQGCSNQEISEQLFISLHTVKTHASHINSKLGVERRTQAVARAKTLGL 118 Query: 234 IC 235 + Sbjct: 119 LA 120 >gi|163847477|ref|YP_001635521.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222525329|ref|YP_002569800.1| LuxR family transcriptional regulator [Chloroflexus sp. Y-400-fl] gi|163668766|gb|ABY35132.1| regulatory protein LuxR [Chloroflexus aurantiacus J-10-fl] gi|222449208|gb|ACM53474.1| transcriptional regulator, LuxR family [Chloroflexus sp. Y-400-fl] Length = 487 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 37/67 (55%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + ++ERE L+L G T+++IA L +SV+TV +L + K+ +R +A A Sbjct: 2 TNESQISEREREILRLVATGATNQQIAIALNISVNTVKVHLRNIFAKIGVESRTEATVYA 61 Query: 229 IRFGYIC 235 IR G + Sbjct: 62 IRNGIVT 68 >gi|322386825|ref|ZP_08060449.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] gi|321269107|gb|EFX52043.1| DNA-binding response regulator [Streptococcus cristatus ATCC 51100] Length = 199 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 4/109 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + YV+ L + G EL + + L+ +E L+ A Sbjct: 95 ADVDAYVLKERSIADLMKTIHTVLAGQKEY----SPELMEVLMTHKNPLSHQELLVLEAA 150 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIAEKL LS T+ Y+ + KL A NR +A+ A G+I Sbjct: 151 ATGLSNKEIAEKLYLSNGTIRNYMSTILTKLAADNRTEAVRIAQEQGWI 199 >gi|320160834|ref|YP_004174058.1| putative NarL family two-component system response regulator [Anaerolinea thermophila UNI-1] gi|319994687|dbj|BAJ63458.1| putative NarL family two-component system response regulator [Anaerolinea thermophila UNI-1] Length = 222 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 8/115 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA-RNLTERE 178 +GY++ L + G +V + K+ ++A NL+++E Sbjct: 104 GASGYILKQIGGEDLIRALESVGRGEALLDPAVTQRVFQEVRRAVKEEEASAFANLSQQE 163 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L L +G T+ EIA+ L L TV Y+ S KL NR +A A A+ Sbjct: 164 KHVLLLVSEGKTNREIAKALFLGEGTVRNYVSSILSKLGVSNRAEAAAYAVEHNL 218 >gi|302531199|ref|ZP_07283541.1| predicted protein [Streptomyces sp. AA4] gi|302440094|gb|EFL11910.1| predicted protein [Streptomyces sp. AA4] Length = 295 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 35/69 (50%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + A L+ RE LQL +G + IA+ L LSV TV ++ S KL A +R A+ Sbjct: 205 QPKGAMPLSRREYQVLQLVAEGLENSGIAKLLFLSVETVRTHVKSILRKLSARDRTHAVT 264 Query: 227 KAIRFGYIC 235 A R G + Sbjct: 265 IAFRSGILV 273 >gi|283853336|ref|ZP_06370584.1| two component transcriptional regulator, LuxR family [Desulfovibrio sp. FW1012B] gi|283571260|gb|EFC19272.1| two component transcriptional regulator, LuxR family [Desulfovibrio sp. FW1012B] Length = 225 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN--- 173 L GYV+ S L + + + G Y Q++ E +RS A Sbjct: 97 LRAGALGYVLKDSAAANLLHGLEAVSRGDRYLDGSIVPQLLLKLDEYAVRRSRPADPAYD 156 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+L +G ++ IA L +S TV + + KL + + + A+R G Sbjct: 157 TLTRREQQILRLLAEGRSAGAIAADLYISRKTVENHRANIFGKLGLTSMAELVHYAVRLG 216 Query: 233 YI 234 I Sbjct: 217 LI 218 >gi|296128509|ref|YP_003635759.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] gi|296020324|gb|ADG73560.1| two component transcriptional regulator, LuxR family [Cellulomonas flavigena DSM 20109] Length = 211 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 4/116 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRS-SAARNLTERET 179 L +G+++ L V + A GA +V +R +T RE Sbjct: 94 LQAGASGFLLKDVPAARLVEGVRLVAAGALLLGPRVARRLAADGPRRPVPGLDRVTARER 153 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G ++ E+A +LG+ TV ++ KL +R Q + A G + Sbjct: 154 EVLAAVAQGLSNAEVAARLGIGEQTVKTHVSELLRKLGRRDRAQLVVAAYEGGVVT 209 >gi|330720547|gb|EGG98827.1| two component transcriptional regulator2C LuxR family protein [gamma proteobacterium IMCC2047] Length = 151 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 61/130 (46%), Gaps = 6/130 (4%) Query: 109 EGGLLPFAGIAFPVRLG----FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF 164 + ++ F GI P L G S + ++ + + G Y V ++FLEL Sbjct: 19 DSRIIVFTGINAPGLLATIVESGVEGLFSKGSPVDQMREKLPLISQGGRY-VASEFLELI 77 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 ++ LT+RE L + G ++EIAE L +S TV+ + S KL+ + Q Sbjct: 78 QQGQ-QVSALTDRELQVLNMIVAGKINKEIAEALFISPKTVDKHRTSLMSKLEVHSVAQL 136 Query: 225 IAKAIRFGYI 234 +A+A++ G I Sbjct: 137 LARALKDGLI 146 >gi|325266892|ref|ZP_08133563.1| nitrate/nitrite response regulator protein NarL [Kingella denitrificans ATCC 33394] gi|324981633|gb|EGC17274.1| nitrate/nitrite response regulator protein NarL [Kingella denitrificans ATCC 33394] Length = 224 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 7/112 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARNLTERET 179 GY++ L V HG +++ + + S+ LT RE Sbjct: 100 GARGYLLKNIHADFLIEAVKKAYHGDNIFSPEMTARLVQSLIRPHQPESTPLDELTAREL 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA A++ Sbjct: 160 EILGHLSAGHSNKIIARHLDLAESTVKVHVQNILRKLELDSRVQAAVYAVQH 211 >gi|288919627|ref|ZP_06413956.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] gi|288349025|gb|EFC83273.1| two component transcriptional regulator, LuxR family [Frankia sp. EUN1f] Length = 218 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 122 VRLG--FHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF------KKRSSA 170 V G+++ + +L V A G + L K+R+ Sbjct: 93 VHGALRAGARGFLLKDAGPALLVQAVHAAAVGDALIAPNITRRLLATLAAGASSKRRTQP 152 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT+RE L+L G T+ EIA +L +S+ T ++ S K+ A NR++ A Sbjct: 153 IEPLTQREEEVLKLVAVGRTNAEIAAELFISLTTAKTHVASLLAKIGARNRVEIAMWAYD 212 Query: 231 FG 232 G Sbjct: 213 TG 214 >gi|256380511|ref|YP_003104171.1| LuxR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255924814|gb|ACU40325.1| two component transcriptional regulator, LuxR family [Actinosynnema mirum DSM 43827] Length = 216 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 46/119 (38%), Gaps = 10/119 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR-------NLT 175 GYV T L V+ A G ++ L+ F R AA LT Sbjct: 98 AGARGYVTKTISSQELVRAVVRVAEGDAVFSPRLAGFVLDAFADRPGAAPISDPELDLLT 157 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L GY +EIA +L +SV TV ++ S K NR + A + Sbjct: 158 PRERDVLRLLARGYAYKEIASELFISVKTVETHVSSVLRKTQLSNRYELSRWASDRRLV 216 >gi|218289695|ref|ZP_03493903.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|258512532|ref|YP_003185966.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|218240152|gb|EED07336.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius LAA1] gi|257479258|gb|ACV59577.1| two component transcriptional regulator, LuxR family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 221 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 7/116 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN----LTERE 178 +GY++ + L + G QV+ L ++ + + LT RE Sbjct: 101 AGVSGYIVKDAPMEDLLRAIREAHEGRAMVHPQVMRAVLGEIERYAKPSDGWKDLLTARE 160 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G ++E+IAE L +++ T ++ KL+ +R QA+ A R +I Sbjct: 161 FDVLCQMAAGKSNEQIAESLHITLKTAKNHVSHILAKLNVSDRSQAVLHAYRERWI 216 >gi|196230839|ref|ZP_03129700.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] gi|196225180|gb|EDY19689.1| two component transcriptional regulator, LuxR family [Chthoniobacter flavus Ellin428] Length = 221 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN--LTERETS 180 GY++ TS +A + A G + LE+F K + AR+ LT RE Sbjct: 103 AGAAGYLLKTSSIEDIAAAIRTAAAGGSPINPTIARRVLEMFSKANPPARDYGLTPREQE 162 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L++ G T +E A L +S +T + Y+ S KL +R A+AKA+ G + Sbjct: 163 ILEVLVQGKTIKEAAAALKISYYTADEYIRSVYDKLQVRSRSSAVAKAVSEGLV 216 >gi|254421396|ref|ZP_05035114.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] gi|196188885|gb|EDX83849.1| response regulator receiver domain protein [Synechococcus sp. PCC 7335] Length = 242 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/134 (22%), Positives = 46/134 (34%), Gaps = 29/134 (21%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-----------------------------ACY 154 + GY++ + LA + A G A Sbjct: 98 MAVGAQGYLLKDTPSEELAAAIRSVAKGYSQFGPGIVQKMIGALPNIAAPPVSRSTRASS 157 Query: 155 QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATV 214 + T LT RET L G+G +++EIA++L LS TV ++ S Sbjct: 158 ALDTSLEANKVDLPPEVAALTPRETEVLVCIGNGASNKEIAQQLFLSEGTVKNHVTSVLS 217 Query: 215 KLDAVNRIQAIAKA 228 +L +R QA A Sbjct: 218 RLGLRDRTQAALLA 231 >gi|142969|gb|AAA22473.1| germination protein (ttg start codon) [Bacillus subtilis] gi|1770055|emb|CAA99550.1| transcriptional regulator of spore coat genes [Bacillus subtilis] Length = 74 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 38/70 (54%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +K + +LT+RE +L T++EIA +L +S TV ++ +A KL R Sbjct: 1 MKEKEFQSKPSLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRS 60 Query: 223 QAIAKAIRFG 232 QA+ + +R G Sbjct: 61 QAVVELLRMG 70 >gi|239930001|ref|ZP_04686954.1| two component transcriptional regulator, LuxR family protein [Streptomyces ghanaensis ATCC 14672] Length = 209 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 3/112 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G++ + L V GA +VI L + LTERE L Sbjct: 101 LDAQVAGFLPKDASPEELLGGVRRV--GAGRRVIDPELAMA-AWEIGDSPLTEREVEVLA 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +G + +IA LSV TV YL + KL A NR+ A+ A G++ Sbjct: 158 RVAEGADTTQIAATTSLSVGTVRNYLTTIVNKLGARNRVDALRIARDNGWLA 209 >gi|260362858|ref|ZP_05775727.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030] gi|260880146|ref|ZP_05892501.1| putative transcriptional regulator [Vibrio parahaemolyticus AN-5034] gi|260895263|ref|ZP_05903759.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466] gi|308085787|gb|EFO35482.1| DNA-binding protein [Vibrio parahaemolyticus Peru-466] gi|308092058|gb|EFO41753.1| putative transcriptional regulator [Vibrio parahaemolyticus AN-5034] gi|308112231|gb|EFO49771.1| putative transcriptional regulator [Vibrio parahaemolyticus K5030] Length = 214 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L++ +G ++ EIA+ L +S HT+ ++L + KL+ NR QA + Sbjct: 149 EPAIEVELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATS 208 Query: 227 KAIR 230 A R Sbjct: 209 WAKR 212 >gi|258513942|ref|YP_003190164.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Desulfotomaculum acetoxidans DSM 771] gi|257777647|gb|ACV61541.1| ATP-dependent transcriptional regulator, MalT- like, LuxR family [Desulfotomaculum acetoxidans DSM 771] Length = 824 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 38/81 (46%) Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + ++E + + LTERE L LA +G EIA +L +S TV +L + Sbjct: 744 LEACEHYIESLSRAPESTVTLTERELEVLTLAAEGLRRNEIAARLYVSGTTVKTHLANIY 803 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 KL+ R A+ KA + I Sbjct: 804 RKLEVGGRTAAVKKAGKLKII 824 >gi|59712516|ref|YP_205292.1| DNA-binding response regulator in two-component regulatory system with NarQ [Vibrio fischeri ES114] gi|59480617|gb|AAW86404.1| DNA-binding response regulator in two-component regulatory system with NarQ [Vibrio fischeri ES114] Length = 203 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ SE L + G A + + LE + LT RE LQ Sbjct: 96 AGADGYLLKDSEPDELIALLKEAMKGGKAYSEQVKTCLEEDAQGDDKLSQLTARELEILQ 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G ++++A+KL +S TV ++ S KL+ +R+ A Sbjct: 156 HVAKGMRNKQVADKLFISEATVKVHMKSLLKKLNVKSRVAA 196 >gi|28901301|ref|NP_800956.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus RIMD 2210633] gi|153835889|ref|ZP_01988556.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|260900615|ref|ZP_05909010.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] gi|28809814|dbj|BAC62789.1| putative transcriptional regulator, LuxR family [Vibrio parahaemolyticus RIMD 2210633] gi|149750643|gb|EDM61388.1| DNA-binding HTH domain-containing protein [Vibrio parahaemolyticus AQ3810] gi|308106917|gb|EFO44457.1| putative transcriptional regulator [Vibrio parahaemolyticus AQ4037] gi|328469239|gb|EGF40185.1| LuxR family transcriptional regulator [Vibrio parahaemolyticus 10329] Length = 218 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L++ +G ++ EIA+ L +S HT+ ++L + KL+ NR QA + Sbjct: 153 EPAIEVELTRREIQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATS 212 Query: 227 KAIR 230 A R Sbjct: 213 WAKR 216 >gi|329120079|ref|ZP_08248749.1| nitrate/nitrite response regulator protein NarL [Neisseria bacilliformis ATCC BAA-1200] gi|327463610|gb|EGF09928.1| nitrate/nitrite response regulator protein NarL [Neisseria bacilliformis ATCC BAA-1200] Length = 225 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN-----LTERE 178 +G+++ L + A G +++ + ++ K + LT RE Sbjct: 104 GAHGFLLKNINADFLTESIRNAAEGNNVFSPEMMANMVQSLIKPAKPVEENRLDELTARE 163 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV Y+ + KL+ +R+QA A++ Sbjct: 164 LEVLGYLAAGHSNKIIARSLDLAESTVKVYVQNILRKLELTSRVQAAVYAVQH 216 >gi|310644124|ref|YP_003948882.1| response regulator (chey-like receiver domain and hth-type DNA-binding domain) [Paenibacillus polymyxa SC2] gi|309249074|gb|ADO58641.1| Response regulator (CheY-like receiver domain and HTH-type DNA-binding domain) [Paenibacillus polymyxa SC2] Length = 216 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------L 174 L GY++ + L + G ++ K+ + + L Sbjct: 95 LSLGAKGYLLKDTSRENLFRTIESALRGETLLQPEITARVFAATNKKEAKLESRESSLVL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T++E L+ G+ S+EIA +G+S TV A+L + KL +R +A+A ++ G + Sbjct: 155 TDKERHILKSVAHGFKSKEIAFDMGISERTVKAHLTNIYNKLGVDSRSEAVAVSLERGIL 214 >gi|322418556|ref|YP_004197779.1| LuxR family two component transcriptional regulator [Geobacter sp. M18] gi|320124943|gb|ADW12503.1| two component transcriptional regulator, LuxR family [Geobacter sp. M18] Length = 224 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY--------QVITDFLELFKKRSSAARN---L 174 GY++ + L + + G + VI K+ S + L Sbjct: 99 AGARGYIVKEATSDRLIEAMDALSQGEHFLDGQLSGDMVIRHLCGQGKEGSVQDQGYALL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE ++L +G +S IAE L +S TV + + KLD +RI+ + A R G I Sbjct: 159 SPREQQVMRLVAEGGSSRSIAEALQVSAKTVENHRTNLMKKLDVHSRIELVRYAARLGLI 218 >gi|256395415|ref|YP_003116979.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361641|gb|ACU75138.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 217 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSA--------AR 172 L + + + L + A G + + F+ + A Sbjct: 95 LHAGVSCLLGKDARPQELIAAIQAAATGQTVLAPSIAQRLVGWFRAQPEPQEAAMCPGAS 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +++ G ++EE+A +L + TV ++ KL +R + ++ A R G Sbjct: 155 ELTSREREVVRMVARGMSTEEVARELIIGEATVRTHVYRVRTKLGVRDRAELVSLAYRSG 214 Query: 233 YI 234 I Sbjct: 215 LI 216 >gi|21220777|ref|NP_626556.1| two-component system response regulator [Streptomyces coelicolor A3(2)] gi|7619763|emb|CAB88186.1| putative two-component system response regulator [Streptomyces coelicolor A3(2)] Length = 210 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 45/109 (41%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ LA + G + + D S+ LT RE L+ + Sbjct: 105 AGAAGFLVKDGPVEELAGAIRRVLGG---ETVVDPALAAAALSAGPSPLTARECDVLRAS 161 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T +IA L LS TV YL SA K NR +A+ A G++ Sbjct: 162 ADGATVADIAGALHLSESTVRNYLSSAIGKTGTRNRAEALRAARGQGWL 210 >gi|332290267|ref|YP_004421119.1| transcriptional regulator NarP [Gallibacterium anatis UMN179] gi|330433163|gb|AEC18222.1| transcriptional regulator NarP [Gallibacterium anatis UMN179] Length = 209 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 2/103 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCLQ 183 +GY++ +E L ++ A G L S+ + LT+RE L+ Sbjct: 98 AGADGYLLKDTEPDTLLVQLKKIAEGQVVLSDAVKQRLLDNHSANDPLQLLTDREMDVLK 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 L G ++++IA +L +S TV ++ + KL+ +R+ A Sbjct: 158 LIATGLSNKQIANQLFISEETVKVHIRNLLRKLNVHSRVAATV 200 >gi|325272909|ref|ZP_08139236.1| ATP-dependent transcription regulator LuxR [Pseudomonas sp. TJI-51] gi|324101953|gb|EGB99472.1| ATP-dependent transcription regulator LuxR [Pseudomonas sp. TJI-51] Length = 665 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 41/80 (51%) Query: 156 VITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 ++ L ++ L+ RE + L+L G ++++I+E+L +S+HTV + K Sbjct: 586 LLGHLPALPSAPCGSSEALSGRELAVLELIAQGCSNQQISERLFISLHTVKTHASHINSK 645 Query: 216 LDAVNRIQAIAKAIRFGYIC 235 L R QA+AKA G + Sbjct: 646 LGVERRTQAVAKAKSLGLLA 665 >gi|268317984|ref|YP_003291703.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] gi|262335518|gb|ACY49315.1| two component transcriptional regulator, LuxR family [Rhodothermus marinus DSM 4252] Length = 218 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTER 177 L YV+ S L + G Y + + E + LT+R Sbjct: 97 LRGGAMAYVLKGSPVEELVQALEALYQGRRYLSAPLSERLLAQAEAPQDLRDPYETLTDR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L L +GYTS EIAE+L +S TV + + KLD ++ + I A++ G + Sbjct: 157 ERQILHLTAEGYTSREIAERLFISPRTVEKHRENLMAKLDIHSQAELIHYAVQRGLV 213 >gi|331005380|ref|ZP_08328764.1| Transcriptional activator protein vanR [gamma proteobacterium IMCC1989] gi|330420834|gb|EGG95116.1| Transcriptional activator protein vanR [gamma proteobacterium IMCC1989] Length = 271 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 58/152 (38%), Gaps = 4/152 (2%) Query: 87 IIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLA--NE 144 W ++++ + + ++G+ + +I S + Sbjct: 120 FTWHDMKQQALSREQSAI-FNEAEDFKLYSGVNVSIHNANGVKCVIIAASNQQGFSVNQY 178 Query: 145 VIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVH 203 + +Q T FL L K + LT++E L+ G + EI +K+ +S H Sbjct: 179 TKDIVNLLAHQFNTCFLSLTKHELIQKKIPLTQKEEEILKWISKGLSKPEIGDKMNISSH 238 Query: 204 TVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 TV+ Y+ S K+ N + + KAI+ I Sbjct: 239 TVSYYMRSIFKKMGTNNTVSTVIKAIKEELIV 270 >gi|325069082|ref|ZP_08127755.1| two-component system regulator [Actinomyces oris K20] Length = 243 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 49/125 (39%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSA---------- 170 L G+++ ++ L + V G QV+ + + +S Sbjct: 117 LRAGACGFLLKDADPQSLVDAVRTVHEGQSLLSPQVLARLVARMPRTASTGTSRSTWTGE 176 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT R+ L L G ++ EI +LG++ T +++ + +L A +R Q + A Sbjct: 177 VEALTPRQREVLLLIARGLSNSEIEVELGITRATCRSHITALLARLGARDRAQLVIAAYE 236 Query: 231 FGYIC 235 G I Sbjct: 237 AGLIS 241 >gi|309792814|ref|ZP_07687256.1| regulatory protein LuxR [Oscillochloris trichoides DG6] gi|308225126|gb|EFO78912.1| regulatory protein LuxR [Oscillochloris trichoides DG6] Length = 464 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 39/67 (58%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 S ++ERE L+L G ++++IA++L +SV+TV ++ + K ++R +A A Sbjct: 2 SNENPISEREREILKLVATGASNQQIAQQLNISVNTVKVHVRNIFSKTGVMSRTEATIYA 61 Query: 229 IRFGYIC 235 I G++ Sbjct: 62 INHGFVV 68 >gi|297159287|gb|ADI08999.1| two component transcriptional regulator, LuxR family protein [Streptomyces bingchenggensis BCW-1] Length = 225 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 10/118 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----------LT 175 GY++ ++ +A+ + A G + +E+ + AR+ LT Sbjct: 102 AGACGYLLKSASGDEIADAIRSAAEGETLIPASTLVEVLARHRETARSSAQQTERLESLT 161 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L G + +AE+L +S TV ++ KL+ ++++A+AKA +G+ Sbjct: 162 PREQEILTLMSQGLDNRAVAERLSISYATVRTHVRKILEKLEVRSQLEAVAKAADWGF 219 >gi|302543141|ref|ZP_07295483.1| putative response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302460759|gb|EFL23852.1| putative response regulator [Streptomyces himastatinicus ATCC 53653] Length = 213 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 36/68 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 ++ LT RE L+L +G + EIA KL S TV + T +LD NR A+A Sbjct: 146 ATQPSGLTPREIDVLRLVAEGMGTGEIASKLSYSERTVKNIMQGLTTRLDLRNRAHAVAY 205 Query: 228 AIRFGYIC 235 A+R GYI Sbjct: 206 ALREGYIS 213 >gi|284035632|ref|YP_003385562.1| LuxR family transcriptional regulator [Spirosoma linguale DSM 74] gi|283814925|gb|ADB36763.1| two component transcriptional regulator, LuxR family [Spirosoma linguale DSM 74] Length = 218 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 12/121 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKK-----RSSAARN 173 GY++ S + + A G Y +++ +++ KK R+ Sbjct: 98 AGAYGYILKDSSSDEMIKAIRTIASGEKYYSSPVASIILSGYMQQLKKGDRHGRAERQSK 157 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ +E LQ DG +S EIAEKL LSV TV+ + + +L N + + A+ Sbjct: 158 LSNKEKEILQFLVDGMSSREIAEKLQLSVRTVDNHRANMMRRLQVRNAAELVRMAVEDKL 217 Query: 234 I 234 I Sbjct: 218 I 218 >gi|239816173|ref|YP_002945083.1| two component LuxR family transcriptional regulator [Variovorax paradoxus S110] gi|239802750|gb|ACS19817.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus S110] Length = 262 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 13/119 (10%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN---------- 173 GY++ + A V+ +G ++ L + S R Sbjct: 142 GATGYLLKHAWLQSFAEAVLQVVNGGAAITPKLTRRLLTRMNLQGSGERPPTETPLREAT 201 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L+ G S+EI+ +LG+S TVNA++ + KL +R QA++ A G Sbjct: 202 LTAREREVLRFVARGCVSKEISVRLGISGQTVNAHIKNIYKKLHVHSRAQAVSLATHTG 260 >gi|160883554|ref|ZP_02064557.1| hypothetical protein BACOVA_01526 [Bacteroides ovatus ATCC 8483] gi|156110967|gb|EDO12712.1| hypothetical protein BACOVA_01526 [Bacteroides ovatus ATCC 8483] Length = 275 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 37/67 (55%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 ++ NLT RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI Sbjct: 209 PSSLNLTNREIEILRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLG 268 Query: 229 IRFGYIC 235 G + Sbjct: 269 QETGLLS 275 >gi|325000399|ref|ZP_08121511.1| two-component system response regulator [Pseudonocardia sp. P1] Length = 219 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS------AARNLTER 177 L G+++ + + V A G L + LT R Sbjct: 95 LRAGATGFLLKRTPPRDIVRAVHTVAAGESLLFPAALRGLAAGFAPDGGDHLQDAGLTAR 154 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L L G ++ EIA +L L V TV ++ K + +R QA+ A G++ Sbjct: 155 EGEVLALMARGLSNAEIARELYLGVETVKTHVAGVLAKTGSRDRTQAVVAAYESGFV 211 >gi|256395013|ref|YP_003116577.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361239|gb|ACU74736.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 441 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 31/64 (48%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RET L L G ++ EIA +L ++ TV ++ KL +R QA+ A Sbjct: 365 SALTPRETEVLLLIARGLSNPEIAAELVVTDETVKTHVSRVLTKLGLRDRTQAVVAAYES 424 Query: 232 GYIC 235 G + Sbjct: 425 GLVV 428 >gi|262201684|ref|YP_003272892.1| LuxR family transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085031|gb|ACY20999.1| regulatory protein LuxR [Gordonia bronchialis DSM 43247] Length = 231 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 46/114 (40%), Gaps = 11/114 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN--------L 174 GYV T LA+ V A G ++ L+ F +SSA L Sbjct: 112 AGARGYVTKTISGADLADAVRRVADGDAVFSPRLAGFVLDSFTGKSSAPEPPLDPELDSL 171 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 T RE L+L GYT EIAE+L +S+ TV + + K NR A Sbjct: 172 TRRELEVLRLLARGYTYREIAEELFISIKTVETHASNVLRKTQQSNRNALTRWA 225 >gi|300361177|ref|ZP_07057354.1| two component system response regulator [Lactobacillus gasseri JV-V03] gi|300353796|gb|EFJ69667.1| two component system response regulator [Lactobacillus gasseri JV-V03] Length = 227 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 13/122 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK----------RSSA 170 L + +GY++ L + A G + LF K Sbjct: 97 LKYGASGYLLKGGSPADLFTSIRTVAQGGAMINPDITEKVFRLFSKMAQSNYAISVNDKE 156 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++ ++ E +Q G G +++EIA KL LS TV Y+ KLD +R Q A++ Sbjct: 157 TKDFSKSEWCVIQQVGLGLSNKEIAAKLFLSEGTVRNYISKILEKLDLRDRTQLAIWAVQ 216 Query: 231 FG 232 G Sbjct: 217 TG 218 >gi|116749099|ref|YP_845786.1| two component LuxR family transcriptional regulator [Syntrophobacter fumaroxidans MPOB] gi|116698163|gb|ABK17351.1| two component transcriptional regulator, LuxR family [Syntrophobacter fumaroxidans MPOB] Length = 218 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 9/122 (7%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFK--KRSSAARN 173 L +GYV+ + L + G Y +VI +LE K K S++ Sbjct: 96 TLKAGADGYVLKDATHSELMLAIECVFSGKSYLSPSISEKVIEGYLEGRKTIKSSTSWDT 155 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L++ +GY +++IA+ L +S TV + + KLD + A A+ G Sbjct: 156 LTQREKEILKMIAEGYKNKDIADYLCISAKTVEKHRANLMKKLDLHSASSLTAFAMEKGL 215 Query: 234 IC 235 I Sbjct: 216 IT 217 >gi|116626889|ref|YP_829045.1| two component LuxR family transcriptional regulator [Candidatus Solibacter usitatus Ellin6076] gi|116230051|gb|ABJ88760.1| two component transcriptional regulator, LuxR family [Candidatus Solibacter usitatus Ellin6076] Length = 215 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 51/119 (42%), Gaps = 9/119 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELF---KKRSSAARNLTE 176 GYV+ S L + G + ++ D + ++ S +LT Sbjct: 97 AGARGYVLKNSAGDELIQAIHAVQRGLAFFSPAVARIFQDGVARLQDAREVSDRFESLTG 156 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE QL +G +++EIA +L LS+HTV + KLD + + + A+R G + Sbjct: 157 RERQVYQLLAEGNSNKEIANRLNLSLHTVETHRWHIMEKLDLHSTAELVLSAVRRGLVT 215 >gi|329937421|ref|ZP_08286979.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] gi|329303297|gb|EGG47184.1| DNA-binding response regulator, LuxR family [Streptomyces griseoaurantiacus M045] Length = 229 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L +G++ L + A G A +I +FL + A Sbjct: 93 LHAGASGFLGKDVTTDTLLAGLRTVASGEALLSPAATRTLIANFLMSPSPGAQLASPKRL 152 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE + +A +G ++ EIAE L LS TV ++ A KL A +R Q + A + Sbjct: 153 SELTARERETMAMAAEGMSNSEIAEALVLSPLTVRTHIYRAMAKLGARDRAQLVVIAYQT 212 Query: 232 GYI 234 G + Sbjct: 213 GLV 215 >gi|317968117|ref|ZP_07969507.1| transcriptional regulator, LuxR family protein [Synechococcus sp. CB0205] Length = 89 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 37/66 (56%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + +L+ERE +QL G T++EI E L +S TV+ ++ + K A NR+ + A+ Sbjct: 10 SPMDLSERELEIIQLVAQGLTNQEIGENLMISKRTVDNHVSNVFTKTGAKNRVALLNWAM 69 Query: 230 RFGYIC 235 G IC Sbjct: 70 DHGKIC 75 >gi|315505170|ref|YP_004084057.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|315411789|gb|ADU09906.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 256 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 7/115 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVI----TDFLELFKKRSSAARNLTERET 179 L GY+ + L + V + V+ + ++ +R L+ RE Sbjct: 118 LEVGVRGYLHKSVARHDLVSAVRAVSRDRARVVLGVSRSSLDHVYGRRDEV---LSPREL 174 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L +G ++ +IA +L L+ TV +L + KL AV+RI A+ KA+ I Sbjct: 175 EVLAATAEGLSNAQIATRLSLAETTVKRHLRNIFAKLSAVSRIDAVNKAVAASII 229 >gi|239983739|ref|ZP_04706263.1| putative two-component system response regulator [Streptomyces albus J1074] gi|291455547|ref|ZP_06594937.1| two component transcriptional regulator [Streptomyces albus J1074] gi|291358496|gb|EFE85398.1| two component transcriptional regulator [Streptomyces albus J1074] Length = 225 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAAR----NLTE 176 L G+++ S +L V G Q+ L+ + A LT Sbjct: 102 LHDGACGFLLKRSGPGVLIEGVRAAMAGDILISPQLTVRLLQTLTPSAPAPPTRLTPLTA 161 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET +L G+T+ EI L +S T ++ + KL A NR+ A G Sbjct: 162 RETEIARLVAQGHTNAEIGMTLSISPGTAKTHIANIQTKLKARNRVGIAAWTWENGL 218 >gi|46201160|ref|ZP_00055614.2| COG2197: Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Magnetospirillum magnetotacticum MS-1] Length = 190 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 16/119 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ----------VITDFLELFKKRSSAARN 173 L G++ +S + V + G ++ VI LE + Sbjct: 76 LACGAAGFIPKSSSKERMCEAVGLVMSGEIFRPEEIFGTKAKVIDPLLE------EKLGS 129 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT R+ L L G ++++IA +L ++ TV A++ + KL +R QA+ A + G Sbjct: 130 LTHRQRMVLSLLARGKSNKQIAYELDVTNTTVKAHMTAILRKLKVTSRTQAVIVARQIG 188 >gi|331699960|ref|YP_004336199.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954649|gb|AEA28346.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 223 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEV--------IIEAHGACYQVITDF-LELFKKRSSAARNL 174 L +GY++ L ++ +I+A A V T L+ + A + L Sbjct: 103 LRAGASGYLLKKISGEELVRQLELAHTGTTVIDASLAGRAVDTAARLQSDEFWPGARQGL 162 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE+ L L G ++ IA +L +S TV ++L S KL +R A+A A+R G Sbjct: 163 THRESEVLSLMVTGLSNRGIATRLVVSDETVKSHLRSIYRKLGVGDRTAAVATALREGI 221 >gi|56459425|ref|YP_154706.1| response regulator [Idiomarina loihiensis L2TR] gi|56178435|gb|AAV81157.1| Response regulator, LuxR family (CheY, HTH domains) [Idiomarina loihiensis L2TR] Length = 198 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 32/110 (29%), Positives = 52/110 (47%), Gaps = 4/110 (3%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 G+++ + L + G QVI++ EL + LTE+E L+L Sbjct: 93 DSGVRGFLLKDAPINELIASLQRVCLGE--QVISN--ELLLQALGQHDPLTEKERKALRL 148 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A G +++ IAE+L ++ T YL A KL A NR +A A + G++ Sbjct: 149 ASQGLSTQAIAEQLFIAPGTARNYLSEAINKLHASNRTEAARIAHQKGWL 198 >gi|284041837|ref|YP_003392177.1| LuxR family transcriptional regulator [Conexibacter woesei DSM 14684] gi|283946058|gb|ADB48802.1| two component transcriptional regulator, LuxR family [Conexibacter woesei DSM 14684] Length = 220 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ---VITDFLELFKKRSSA--------AR 172 L G+++ + L + + + A G V +E F SA R Sbjct: 94 LRAGAAGFLLKDTPPRELLHAIRVVAGGEAMLSPVVTRRLIETFASGRSAQGALARERLR 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L +G ++ E +L +S TV ++ KL+A NR+Q A G Sbjct: 154 RLTPREREVLALVAEGCSNAEAGRRLQMSEATVKTHVSRLLDKLEAANRVQVALVAFDAG 213 Query: 233 YI 234 + Sbjct: 214 LL 215 >gi|254507717|ref|ZP_05119849.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus 16] gi|219549414|gb|EED26407.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus 16] Length = 196 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 3/112 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ +E L + + G A + + +L + + LT+RE L+ Sbjct: 84 AGADGYLLKDTEPDELVELLKVSLRGNKAYSKEVAKYLADRENSTDVFDELTDREMQILK 143 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234 GY +++IA+ L +S TV ++ S KL +R A + R+G I Sbjct: 144 EVAKGYRNKQIADTLFISESTVKVHMKSLLKKLSVPSRTAATVMYLERYGEI 195 >gi|328884073|emb|CCA57312.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 206 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 42/110 (38%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ L + A G + + R +A +LT+RE L Sbjct: 96 AGATGYLLKAERPEELFAAIHSAAQGRTALSPPVASRVMDRMRGAAGPSLTDRERDILGQ 155 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G G + EIA L +S TV +LG KL R A+A A + Sbjct: 156 LGRGLGNREIARALFISEATVKTHLGRIYAKLGVDTRAGAVAVAKERRLL 205 >gi|326797312|ref|YP_004315132.1| LuxR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326548076|gb|ADZ93296.1| transcriptional regulator, LuxR family [Marinomonas mediterranea MMB-1] Length = 254 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 4/88 (4%) Query: 139 LMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKL 198 L ++ H AC + +K SS LT RE L G T+ EI+ L Sbjct: 167 CHLIELIMPYLHSACSAA----SRIQRKSSSPINVLTSREREVLNWISSGKTNGEISMIL 222 Query: 199 GLSVHTVNAYLGSATVKLDAVNRIQAIA 226 G+S +TV ++ S KL+A NR+ A A Sbjct: 223 GISPNTVKNHVASILGKLNAPNRLAATA 250 >gi|307328219|ref|ZP_07607397.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306886053|gb|EFN17061.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 229 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 10/118 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----------LT 175 GY++ ++ +A+ + A G + +E+ + AR+ +T Sbjct: 102 AGACGYLLKSASGDEIASAIRSAAEGETLIPASTLVEVLARHREDARSTAEQNERLDSMT 161 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L G + +AE+L +S TV ++ KLDA ++++A+A+A FG+ Sbjct: 162 PREQEILTLMSQGLDNRAVAERLSISYATVRTHVRRILEKLDARSQLEAVARAAEFGF 219 >gi|291301148|ref|YP_003512426.1| LuxR family two component transcriptional regulator [Stackebrandtia nassauensis DSM 44728] gi|290570368|gb|ADD43333.1| two component transcriptional regulator, LuxR family [Stackebrandtia nassauensis DSM 44728] Length = 214 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 8/117 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARN-LT 175 L G+++ + L + A G +++ + +A LT Sbjct: 94 LAAGACGFLVKDTSPNELLEAIRKAADGDTPFSAGVVKRIVDSAVRARASVPTATLPKLT 153 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 RE L L G GY + +IAE+L L V TV ++ S K NR++ A+R G Sbjct: 154 TREREVLALVGAGYANVDIAERLHLGVTTVKTHIASLMTKTGCSNRVRLAVLAVRSG 210 >gi|222150392|ref|YP_002559545.1| two-component response regulator NreC [Macrococcus caseolyticus JCSC5402] gi|222119514|dbj|BAH16849.1| two-component response regulator NreC [Macrococcus caseolyticus JCSC5402] Length = 216 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLE---LFKKRSSAARN 173 L NGY++ + L V Y ++ + + + ++ + Sbjct: 94 LKNGANGYILKNAPDEELIKAVRTVYQEGTYIDPKMATSLVHELIHHDTEYSAKNDHLKI 153 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L GY ++EIAE L +SV TV A+ KL+ ++ + + A++ Sbjct: 154 LTKRELEILPLIAKGYGNKEIAEMLYVSVKTVEAHKARIMDKLELKSKPELVEYALKKKL 213 Query: 234 I 234 + Sbjct: 214 L 214 >gi|94499701|ref|ZP_01306238.1| two-component system regulatory protein [Oceanobacter sp. RED65] gi|94428455|gb|EAT13428.1| two-component system regulatory protein [Oceanobacter sp. RED65] Length = 211 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG------ACYQVITDFLELFKKRS-SAARNLTERET 179 GY+ L + + G A I+ + + + S S L+ ET Sbjct: 97 GAKGYLRKDVGLDELTSAIKHVLKGGDWVRPAVTDRISRYAQAIPQESLSDKIELSTSET 156 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY++ EIA + + TV + S KLD +R QA+ +AI G I Sbjct: 157 QVLRLVAAGYSNNEIASTVFKAQGTVRNQISSILEKLDVRDRTQAVMRAIELGLI 211 >gi|325830372|ref|ZP_08163829.1| response regulator receiver domain protein [Eggerthella sp. HGA1] gi|325487839|gb|EGC90277.1| response regulator receiver domain protein [Eggerthella sp. HGA1] Length = 213 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 13/119 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------- 173 L GY+I E +A + G +V+ L + + A N Sbjct: 94 LRLGAKGYLIK-QEAATIAPALRTVMAGQSVLGGEVLDRMDVLMSRGPACAENAPGGEMR 152 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE++ ++L +G ++EIA +L LS TV ++ + KLD NR Q + + R Sbjct: 153 SGLTERESAIVELVAEGLDNKEIAARLYLSEGTVRNHISAILQKLDLKNRTQLVVRYYR 211 >gi|312197458|ref|YP_004017519.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228794|gb|ADP81649.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 206 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 6/111 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTE---RET 179 GY++ + L + A G V L ++ + L RE Sbjct: 93 AGAAGYLLKQIKGTDLIGAIRTIAAGRSLLDPAVTQRVLTRLREGPTQDPKLAALGTRER 152 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L L +G T+ +IA ++ LS TV Y+ S VKL+ +R QA A R Sbjct: 153 EILHLVAEGLTNRQIASRIHLSEKTVKNYVSSILVKLELTSRTQAAVFAAR 203 >gi|317055507|ref|YP_004103974.1| LuxR family two component transcriptional regulator [Ruminococcus albus 7] gi|315447776|gb|ADU21340.1| two component transcriptional regulator, LuxR family [Ruminococcus albus 7] Length = 209 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 7/109 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSS---AARNLTER 177 L GY++ +F +A + G +++T EL K +S + ++E+ Sbjct: 93 LNIGAKGYILK-QDFEGIAPALEAVMGGQSVFGDKIVTKLPELMKPKSDFNYDSYGISEK 151 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 E L+L +G +++EI+ +L LS TV Y+ S KL +R Q Sbjct: 152 EKEILELVAEGKSNKEISAELFLSEGTVRNYISSLLDKLSLRDRTQLAV 200 >gi|291618350|ref|YP_003521092.1| NarP [Pantoea ananatis LMG 20103] gi|291153380|gb|ADD77964.1| NarP [Pantoea ananatis LMG 20103] gi|327394743|dbj|BAK12165.1| nitrate/nitrite response regulator protein NarP [Pantoea ananatis AJ13355] Length = 210 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ SE +L +++ G + L + R LTERE + Sbjct: 99 DAGADGYLLKDSEPEILLRQIMQALQGETVFSDAVRHALSMRHNSDDPFRLLTERERGVM 158 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 Q G +++++A L +S TV ++ + KLD +R+ A Sbjct: 159 QEVARGLSNKDVAHALHISEETVKVHIRNVLRKLDVRSRVAA 200 >gi|149914298|ref|ZP_01902829.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] gi|149811817|gb|EDM71650.1| two component transcriptional regulator, LuxR family protein [Roseobacter sp. AzwK-3b] Length = 223 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----LTERET 179 L +G + L N + + G + EL AR LT RE Sbjct: 109 LSKGADGIISHGQSLRSLVNAIGLIQSGEVFIPANINSELHHNWVEPARPRNEALTHREK 168 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQLA DG T++EIA++LG++ V + + KL A NR A+ +A R I Sbjct: 169 RILQLASDGGTNKEIAQELGITESQVKMVMRTLCAKLQAKNRTHAVVRANRLDLI 223 >gi|328883875|emb|CCA57114.1| putative two-component system response regulator [Streptomyces venezuelae ATCC 10712] Length = 204 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I+ H V + ++ LT RE L+ Sbjct: 97 LSAGVRGFVPKTVSAQRLA-EIILTVHAGNRYVDPELAA--DAIAAGDSPLTAREAEVLE 153 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + DG EIA + LS TV YL SA KL A NR A+ A G++ Sbjct: 154 FSADGAPVAEIARRASLSPGTVRNYLSSAAAKLGAENRHAAVRLAQAKGWV 204 >gi|319791973|ref|YP_004153613.1| two component LuxR family transcriptional regulator [Variovorax paradoxus EPS] gi|315594436|gb|ADU35502.1| two component transcriptional regulator, LuxR family [Variovorax paradoxus EPS] Length = 214 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 65/161 (40%), Gaps = 15/161 (9%) Query: 86 PIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRL-----------GFHKNGYVIF 134 P W I + + + LS+ +E L G + GY++ Sbjct: 47 PDRWGLILLDLDVPGAVGLSLAMEIKKLGKEGRTCILTGTHRTDYIAQAKASGFQGYILK 106 Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 E L E ++ A +V + +L A LT R+ CL+ G G +++EI Sbjct: 107 AIEIKEL--EASLDKAIAGEKVFPELPDLGAN--PNAIRLTNRQCQCLEFVGAGRSTKEI 162 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 A L L TVN ++ SA L +R A+ KA++ G + Sbjct: 163 ARLLSLHPGTVNYHIDSAMEALGVKSRAHAVQKALQLGLLA 203 >gi|296284992|ref|ZP_06862990.1| two component LuxR family transcriptional regulator [Citromicrobium bathyomarinum JL354] Length = 216 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 8/117 (6%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-----NLTE 176 GY++ + ++ G Q+ L L + LT Sbjct: 99 AAGATGYILKNDRPEEVGRNLLTVLEGGSPISPQIARYLLNLVPQPEEPKDDGLEIRLTA 158 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L+L G+ +E+A+KL ++V TV ++ + KL+ + QA+A A R G Sbjct: 159 REKDILRLIAHGFKRQEVADKLNITVGTVGTHINNVYRKLEVGSNTQAVATANRLGL 215 >gi|54308044|ref|YP_129064.1| putative nitrate/nitrite response regulator protein [Photobacterium profundum SS9] gi|46912470|emb|CAG19262.1| putative nitrate/nitrite response regulator protein [Photobacterium profundum SS9] Length = 208 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 2/104 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCL 182 +GY++ +E L + + G A ++ + LE ++ LT+RET L Sbjct: 97 AAGADGYLLKDTEPDELISLLKQALCGGKAYSDIVREHLESNTEQDCLLSLLTDRETQIL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 Q GY +++IA+ L +S TV ++ S KL +R A Sbjct: 157 QEVAKGYRNKQIADALFISEATVKVHMKSLLKKLQVKSRTAATV 200 >gi|297622936|ref|YP_003704370.1| LuxR family transcriptional regulator [Truepera radiovictrix DSM 17093] gi|297164116|gb|ADI13827.1| transcriptional regulator, LuxR family [Truepera radiovictrix DSM 17093] Length = 478 Score = 91.2 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 5/104 (4%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAAR-----NLTERETSCLQLAGDGYT 190 +E L + V+ +A V+ L + ++ A +LT RE L+L +G Sbjct: 359 AELLAAIDAVMQDATWFGRSVVERLLRARRGATAEAPGATLGDLTARERQVLELIAEGQK 418 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +EEIA LGLS +TV Y+ + K+ R +A+ A G I Sbjct: 419 NEEIALALGLSKNTVRNYVANLYAKIGVQGRAEAVIWARERGVI 462 >gi|313202129|ref|YP_004040787.1| two component LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|312441445|gb|ADQ85551.1| two component transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 232 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L +GY++ E L + G + LE +++ LT+ Sbjct: 117 LRAGADGYLLKDMEPEDLCASLKKVISGMTVIQDSLTEVLKQALLEPRTRKADDDVALTD 176 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE LQ DG ++ IA KLG+S TV ++ KL +R++A A R Sbjct: 177 REQEILQCLADGLNNKTIARKLGISDTTVKVHIKHLLSKLKLTSRLEAAVWAHRK 231 >gi|205353364|ref|YP_002227165.1| transcriptional regulator NarP [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205273145|emb|CAR38106.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326628455|gb|EGE34798.1| nitrate/nitrite response regulator protein NarP [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 207 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 48/105 (45%), Gaps = 5/105 (4%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFL---ELFKKRSSAARNLTERET 179 +GY++ S+ +L + A+G + ++L E F + LTERE Sbjct: 92 DAGADGYLLKDSDPEVLLEGIRKGANGGKVFSDRVNEYLRERERFGAQEDPFSILTEREL 151 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G ++++IA L +S TV ++ + KL+ +R+ A Sbjct: 152 DVLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAA 196 >gi|144899605|emb|CAM76469.1| DNA-binding response regulator, LuxR family [Magnetospirillum gryphiswaldense MSR-1] Length = 228 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 16/124 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLE----------------LFKKRSS 169 +G++ T + N + + G Y + F E + + Sbjct: 96 AGASGFIPKTVSGTAMVNALRLVLSGEKYLPSSSFFEDVTVHMPMMPLQQRPTRTGEIPA 155 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE+ L L +G T++EIA L L T+ +L + K+ A NR QA+ A+ Sbjct: 156 PFDKLSRRESEILALLVEGRTNKEIAIALELQEITIKVHLRNVYRKIGAANRAQAVRIAM 215 Query: 230 RFGY 233 G+ Sbjct: 216 SSGW 219 >gi|111023173|ref|YP_706145.1| response regulator [Rhodococcus jostii RHA1] gi|110822703|gb|ABG97987.1| response regulator [Rhodococcus jostii RHA1] Length = 219 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 47/117 (40%), Gaps = 11/117 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN--------L 174 GYV T LA+ V A G ++ L+ F RS+A L Sbjct: 100 AGARGYVTKTISGAELADGVRRVAGGDAVFSPRLAGFVLDSFTGRSNAPEPQLDPELDSL 159 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T RE L+L GYT EIAE+L +SV TV + + K NR A R Sbjct: 160 TPRELEVLRLLARGYTYREIAEELVISVKTVETHASNVLRKTQQSNRNALTRWAHRR 216 >gi|313201574|ref|YP_004040232.1| LuxR family transcriptional regulator [Methylovorus sp. MP688] gi|26005747|dbj|BAC41336.1| transcription regulator like protein EpsA [Methylobacillus sp. 12S] gi|312440890|gb|ADQ84996.1| transcriptional regulator, LuxR family [Methylovorus sp. MP688] Length = 265 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 37/66 (56%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L ++ + A L+ RE ++ +G T++EI L +S TV +L KLD +NR Sbjct: 192 DLHEEENEALEQLSSREIEIMEWVRNGKTNQEIGMILDISSFTVKNHLQRIFKKLDVLNR 251 Query: 222 IQAIAK 227 QA++K Sbjct: 252 AQAVSK 257 >gi|290955461|ref|YP_003486643.1| two-component system response regulator [Streptomyces scabiei 87.22] gi|260644987|emb|CBG68073.1| putative two-component system response regulator [Streptomyces scabiei 87.22] Length = 221 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 42/109 (38%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L V A G L + L+ERE ++L Sbjct: 110 AGARGYILKAGPPEELFRAVRAAAAGGMGLAPEAAGHLAGHLADPGAALSEREIEVVRLL 169 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G ++ IA L L+ T+ +L KL NR +++A+R G + Sbjct: 170 ALGRSNRAIAAALHLTEATIKTHLVRVYRKLGTENRASTVSEAVRRGLL 218 >gi|317050571|ref|YP_004111687.1| response regulator receiver [Desulfurispirillum indicum S5] gi|316945655|gb|ADU65131.1| response regulator receiver [Desulfurispirillum indicum S5] Length = 224 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 49/123 (39%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-----------ACYQVITDFLELFKKRSSAAR 172 L GY++ + L N + G Q + + Sbjct: 94 LHIGAAGYILKNAADTELINAIRAVKRGEFVLQRGLMENIARQKSRKLSGHTIEAAPPKA 153 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L++RET LQL GYT +E+A++LG+S+ T+ + + L R + + A+ G Sbjct: 154 SLSKRETEVLQLIALGYTQQEVADQLGISIKTIETHKANIMESLGTKKRSELVRYALAHG 213 Query: 233 YIC 235 I Sbjct: 214 LIT 216 >gi|302559865|ref|ZP_07312207.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] gi|302477483|gb|EFL40576.1| two-component system response regulator [Streptomyces griseoflavus Tu4000] Length = 228 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 52/132 (39%), Gaps = 21/132 (15%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L +G+++ ++ L + + A G + L+ + + Sbjct: 94 LRAGASGFLVKDAQPEELLSGIRSVASGDAVVAPSLTRRLLDAYARHLPTPGPDSDSDAP 153 Query: 174 -----------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 LTERE L + G G+T+ EIA +L L+ TV ++G K + +RI Sbjct: 154 TAGHTDARLDALTEREREILTVVGRGWTNTEIATRLHLAESTVKTHVGRILAKTGSRDRI 213 Query: 223 QAIAKAIRFGYI 234 QA+ A + Sbjct: 214 QAVILAYDTKLV 225 >gi|261364979|ref|ZP_05977862.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa ATCC 25996] gi|288566780|gb|EFC88340.1| nitrate/nitrite response regulator protein NarL [Neisseria mucosa ATCC 25996] Length = 218 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA-RNLTERE 178 G+++ L + + G +++ + R+ A LT RE Sbjct: 98 GARGFLLKNINADFLLDSIRKAVDGDNVFSPEMTTRLVQSLISPSAPRTDQALSTLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KLD +R+QA A++ Sbjct: 158 LEILGYLAAGHSNKVIARHLELAESTVKVHVQNLLRKLDLSSRVQAAVYAVQH 210 >gi|241518233|ref|YP_002978861.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862646|gb|ACS60310.1| transcriptional regulator, LuxR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 236 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 41/229 (17%), Positives = 75/229 (32%), Gaps = 12/229 (5%) Query: 10 KSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIPNILI 69 +++ L L + FA +++A F + Y + + Sbjct: 16 AAANEHSLKTALSDVARAHGFERFAYLNLHTAKSF--------AVSTYQKEWQSLYFSRS 67 Query: 70 ETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKN 129 D + W + E + + +G++ P+ GF + Sbjct: 68 YMAIDPVVTAAKRLRRAFRWSADFERRRADDGIKEFYDTAAEFGIRSGLSIPIWTGFGQF 127 Query: 130 GYVIFTSEFLML---ANEVIIEAHGACYQVITDFLE-LFKKRSSAARNLTERETSCLQLA 185 + S + +++ +I L+ ++RE CL+ A Sbjct: 128 AILTLASARHLETSGPDDLDTVGAAGAAALIHARLQGTTTPTQRPDFIFSDREALCLRWA 187 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G IA+ GL+ HTV L KL + QA+A A RFG I Sbjct: 188 AEGLPMHSIADVTGLTYHTVRWDLDRVKAKLGVYTQKQAVAVASRFGLI 236 >gi|227545988|ref|ZP_03976037.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|227213622|gb|EEI81471.1| response regulator [Bifidobacterium longum subsp. infantis ATCC 55813] gi|291517050|emb|CBK70666.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bifidobacterium longum subsp. longum F8] Length = 296 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A G Sbjct: 236 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 295 Query: 234 I 234 + Sbjct: 296 V 296 >gi|167567132|ref|ZP_02360048.1| probable two-component response regulator, LuxR family protein [Burkholderia oklahomensis EO147] Length = 216 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 6/109 (5%) Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSCLQL 184 NGY++ S L + + G + VI L + K A LT RE L+L Sbjct: 109 NGYLLKNSSKQTLLDAIWKVWRG--HTVIDPALNVDQVTTKAVPDGAVALTPRERQVLKL 166 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 +G + +IAEKL +++ TV + + KLDA N + A R G Sbjct: 167 ISEGCRNRDIAEKLTITIKTVETHRLNLMRKLDAHNAAELANWAHRLGL 215 >gi|163753720|ref|ZP_02160843.1| Regulatory protein [Kordia algicida OT-1] gi|161325934|gb|EDP97260.1| Regulatory protein [Kordia algicida OT-1] Length = 146 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 34/58 (58%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L++RE L L +G++++EIA L +S T+ ++ + KLD R QAI KA + Sbjct: 84 LSKREYEVLCLLAEGHSNKEIASLLSVSESTIKTHVSNVYTKLDVKRRTQAIQKAKQL 141 >gi|118581564|ref|YP_902814.1| two component LuxR family transcriptional regulator [Pelobacter propionicus DSM 2379] gi|118504274|gb|ABL00757.1| two component transcriptional regulator, LuxR family [Pelobacter propionicus DSM 2379] Length = 203 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 1/108 (0%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 +G+++ + L + + A G + + LTERE L L Sbjct: 95 SAGAHGFILKDDAYEELLSALRTVAAGGT-AISRAIQHAAIEPEPPVAELTEREREILGL 153 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 G T+ IA+ LG+S+ TVN + + KL+ + + + ++ G Sbjct: 154 IAHGCTNRMIAQHLGISIKTVNNHRTNLMGKLNLHSTAELVRYSLLTG 201 >gi|325104166|ref|YP_004273820.1| two component transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] gi|324973014|gb|ADY51998.1| two component transcriptional regulator, LuxR family [Pedobacter saltans DSM 12145] Length = 217 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 12/122 (9%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELF---------KKRSSAAR 172 N Y++ S + + + A G Y ++ D +E K R Sbjct: 96 AKGANAYLLKKSSYEEMLFAINHVAKGGRYLCDELSMDLIENMNNIGLDLAGKTRLIDEI 155 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L +G T+ EIA KL LS TV + + K N I A++ G Sbjct: 156 ELSDRELEVLGLISEGLTNIEIANKLFLSKRTVEGHRQNLINKTKVKNSAALIKYAVKNG 215 Query: 233 YI 234 I Sbjct: 216 LI 217 >gi|254000165|ref|YP_003052228.1| two component LuxR family transcriptional regulator [Methylovorus sp. SIP3-4] gi|253986844|gb|ACT51701.1| two component transcriptional regulator, LuxR family [Methylovorus sp. SIP3-4] Length = 232 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 7/115 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTE 176 L +GY++ E L + G + LE +++ LT+ Sbjct: 117 LRAGADGYLLKDMEPEDLCASLKKVISGMTVIQDSLTEVLKQALLEPRTRKADDDVALTD 176 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE LQ DG ++ IA KLG+S TV ++ KL +R++A A R Sbjct: 177 REQEILQCLADGLNNKTIARKLGISDTTVKVHIKHLLSKLKLTSRLEAAVWAHRK 231 >gi|226306403|ref|YP_002766363.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226185520|dbj|BAH33624.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 211 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 9/117 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA--RNL 174 L +G+++ T+ L N + A G A +I +F++ K + L Sbjct: 93 LRAGASGFLLKTATADELTNAIRNVAAGDAVLAPRAARALIGEFVQRAPKPTEPLGLSEL 152 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 T+RE L L G G ++ E++ +LG+ TV +++ KL +R+QA A Sbjct: 153 TDREREVLALLGTGMSNAELSRELGVGAPTVKSHVSRVLSKLHLTSRVQAAILAREL 209 >gi|254381629|ref|ZP_04996993.1| luxR family two-component response regulator [Streptomyces sp. Mg1] gi|194340538|gb|EDX21504.1| luxR family two-component response regulator [Streptomyces sp. Mg1] Length = 234 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 10/115 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG----------ACYQVITDFLELFKKRSSAARNLT 175 GYV+ + L + V A G + D + L+ Sbjct: 107 AGAAGYVLKQIKGSDLVSAVRTVATGQSMLDPATTARLMHSLRDPEAVKAPDDDRLAALS 166 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ERE S L+L G+G T+ +IA++L LS TV ++ KL R+QA A + Sbjct: 167 ERERSVLELIGEGLTNAQIAKRLYLSEKTVKNHISRLLDKLGVERRVQAAVIAAQ 221 >gi|319795895|ref|YP_004157535.1| ATP-dependent transcriptional regulator malt-like, luxr family [Variovorax paradoxus EPS] gi|315598358|gb|ADU39424.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Variovorax paradoxus EPS] Length = 914 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/89 (34%), Positives = 47/89 (52%) Query: 146 IIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTV 205 +++A G V + S LT +E LQL +GY++ +AEKL +S TV Sbjct: 825 LLQAMGPMAAVDAEAAAPGAAGDSIKEPLTRKEIRVLQLLAEGYSNNAMAEKLFVSDSTV 884 Query: 206 NAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +L + +KLDA +R QA+A A + G I Sbjct: 885 RTHLRNINMKLDAKSRTQAVAIARKVGVI 913 >gi|223940647|ref|ZP_03632489.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] gi|223890693|gb|EEF57212.1| two component transcriptional regulator, LuxR family [bacterium Ellin514] Length = 243 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 56/113 (49%), Gaps = 6/113 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR---NLTER 177 L +GY++ ++ L ++ G Q+ +E F++++ +L+ R Sbjct: 119 LEAGADGYLLKRTKPADLRCALLDVLGGGAPMTSQIARRVIESFRRKAKNPNEYAHLSMR 178 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 E L+L GY+++ IA+KL LS+ TV ++L KL +R +A+ + + Sbjct: 179 EEQILRLLSQGYSNKLIADKLELSIDTVCSHLKRVFEKLHVSSRTEAVVRYME 231 >gi|254386960|ref|ZP_05002242.1| two-component regulator [Streptomyces sp. Mg1] gi|194345787|gb|EDX26753.1| two-component regulator [Streptomyces sp. Mg1] Length = 220 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAH-------GACYQVITDFLELFKKRSS-AARNLT 175 L +GYV + L GA +I +L+ + + AR +T Sbjct: 100 LKAGASGYVPKSVADRDLVEACRAALRDEPFIYPGAETTLIRTYLDRARTGGALPARPIT 159 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L+L +G+TS+EI + L +S TV + + KL +R++ AIR G I Sbjct: 160 EREEEILKLVAEGHTSKEIGDFLVISAKTVERHRANLLQKLGLRDRLELTRYAIRVGLI 218 >gi|156740169|ref|YP_001430298.1| LuxR family transcriptional regulator [Roseiflexus castenholzii DSM 13941] gi|156231497|gb|ABU56280.1| transcriptional regulator, LuxR family [Roseiflexus castenholzii DSM 13941] Length = 454 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 37/67 (55%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + L+ERE L+L G T+++IA +L +S +TV +L + K+ +R +A Sbjct: 3 NDTLPQLSEREREILRLVATGATNQQIAAQLNISANTVKVHLRNIFGKIGVASRTEATMY 62 Query: 228 AIRFGYI 234 A+R G + Sbjct: 63 AVRSGIV 69 >gi|83594559|ref|YP_428311.1| two component LuxR family transcriptional regulator [Rhodospirillum rubrum ATCC 11170] gi|83577473|gb|ABC24024.1| two component transcriptional regulator, LuxR family [Rhodospirillum rubrum ATCC 11170] Length = 224 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 15/122 (12%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---------------QVITDFLELFKKRSSAA 171 +G++ TS ++ + + + G Y V A Sbjct: 101 GASGFIPKTSSSRVMISALKLVLSGGMYLPAALLDDEVIVEPVAVQAPAGGAGGPTGPTA 160 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT R+ L+L G G +++EIA L LS TV ++ + L NR A+ A R Sbjct: 161 SRLTPRQGEVLRLLGQGKSNKEIARVLDLSEGTVKLHVTAILKALGVNNRTGAVIAAQRL 220 Query: 232 GY 233 G Sbjct: 221 GL 222 >gi|226310881|ref|YP_002770775.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] gi|226093829|dbj|BAH42271.1| two-component hybrid sensor and regulator [Brevibacillus brevis NBRC 100599] Length = 602 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 19/129 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF------------------K 165 + +GY++ + E LA + + H + D Sbjct: 475 MRSGADGYLLKSIESRELAETIRLV-HRGGTMIAQDLFHKMLDGQPVNGQEDLLVAPKQS 533 Query: 166 KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 ++ A LT+RE LQ+ G + IA KL LS TV Y + KL NR A+ Sbjct: 534 EKDENAYGLTKREQEILQMLAQGMRYKTIASKLYLSDGTVRNYASALYDKLGVRNRDDAV 593 Query: 226 AKAIRFGYI 234 K G + Sbjct: 594 QKGKMEGLV 602 >gi|144899411|emb|CAM76275.1| Signal transduction histidine kinase [Magnetospirillum gryphiswaldense MSR-1] Length = 189 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 1/88 (1%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 A G +V T E + A LT RE L A G T+ E + LG+S TV Sbjct: 101 AMADGGIVKVFTKVSE-GRSTQDPAPALTAREREVLLWAAQGKTAWETSAILGISSKTVE 159 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +LG+ KL A + Q I A R G + Sbjct: 160 FHLGNCGRKLGAATKAQTILAAARRGLL 187 >gi|323494233|ref|ZP_08099345.1| two component LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] gi|323311396|gb|EGA64548.1| two component LuxR family transcriptional regulator [Vibrio brasiliensis LMG 20546] Length = 209 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 4/112 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLE-LFKKRSSAARNLTERETSCL 182 GYV+ L + A G Y Q LE L +K L++RE+ L Sbjct: 97 GAKGYVLKDVGSEELVMAINQVAQGRSYLCPQASDRLLEQLNEKPQPKDDTLSKRESDVL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + +G ++EIA+ L +SV TV + KL A + + A++ G + Sbjct: 157 KEIVNGSGNKEIADSLHISVRTVETHRLRIKKKLGATSTAALVKLALQKGLV 208 >gi|304406148|ref|ZP_07387805.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] gi|304344732|gb|EFM10569.1| two component transcriptional regulator, LuxR family [Paenibacillus curdlanolyticus YK9] Length = 221 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 13/148 (8%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVR----LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQ 155 + + +L + G + +G++ + L + G Sbjct: 65 TKRVTMANADAIVLIYTGYDLASHYNMLMDSGVSGFISKAATREQLITAIRCALRGEAVV 124 Query: 156 VITDFLELFKK---------RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 I +L + ++ ++ E+E L+ G +++EIA KL +S TV Sbjct: 125 PIQLLKQLRRSEVRFQQTDGKTVEEVSINEKEQLILREVASGGSNKEIAAKLYISQRTVE 184 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L KL +R +AI +A R G I Sbjct: 185 YNLTRIFEKLGVRSRSEAIVEANRLGLI 212 >gi|258651492|ref|YP_003200648.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258554717|gb|ACV77659.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 219 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 10/119 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR-------NLT 175 GYV T LA+ ++ + G ++ L+ F R S A L+ Sbjct: 101 AGARGYVTKTISGRELADAIVRVSAGDAVFSPRLAGFVLDAFSDRGSPAPITDPELDLLS 160 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L GY +EIA +L +S+ TV ++ S K NR + A + Sbjct: 161 PREREVLKLLARGYAYKEIAAQLFISIKTVETHVSSVLRKTQKSNRYELSRWASDRRLV 219 >gi|163740011|ref|ZP_02147416.1| two component transcriptional regulator, LuxR family protein [Phaeobacter gallaeciensis BS107] gi|163743180|ref|ZP_02150562.1| DNA-binding response regulator, LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161383597|gb|EDQ07984.1| DNA-binding response regulator, LuxR family protein [Phaeobacter gallaeciensis 2.10] gi|161386756|gb|EDQ11120.1| two component transcriptional regulator, LuxR family protein [Phaeobacter gallaeciensis BS107] Length = 204 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-ARNLTERETSCL 182 L G++ T L N V + G Y + + + + A L+ RE L Sbjct: 93 LDAGAIGFIPKTMGAQSLLNAVRFMSAGEIYVPVELMRKEAEAPAHPLADKLSPREIEVL 152 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 G +++EIA +L L T+ ++ + KL+A NR QA A G Sbjct: 153 NGLCRGLSNKEIARELELQEVTIKLHVRTLCRKLEAKNRTQAALTAKEAGL 203 >gi|297625882|ref|YP_003687645.1| LuxR family transcriptional regulator [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921647|emb|CBL56204.1| Regulatory protein, LuxR:Response regulator receiver [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 232 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 9/118 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELF------KKRSSAARNLTE 176 GYV + L + A G ++ L+ F + L++ Sbjct: 115 AGARGYVTKSISTADLVEAIGRVATGDAVFSPRLAGFVLDAFSGSISVESIDEDLDRLSQ 174 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++L GYT +E+A +L +S+ TV ++ + KL NR + A + Sbjct: 175 REREVMKLIARGYTYKEVARELFISIKTVETHVSNVLRKLQLSNRHELTKWATDRKLV 232 >gi|271961819|ref|YP_003336015.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270504994|gb|ACZ83272.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 213 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 8/116 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDF-LELFKKRSSAARNLT 175 L G+++ ++ L V + A G ++I+ F + ++R LT Sbjct: 92 LRAGAAGFLLKNTDADALVEAVRVVARGDGLISPSVTRRLISAFGTAVPERRPQEVGGLT 151 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L G G ++ EI+ +L ++ T ++ KL +R+QA A Sbjct: 152 PREREVLACIGRGMSNAEISVELDMAEATTKTHVSRLLNKLGLRSRVQAAILAQEL 207 >gi|282860668|ref|ZP_06269734.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564404|gb|EFB69940.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 220 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 49/123 (39%), Gaps = 12/123 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKK---------RSSAA 171 L +G+++ + L + A G ++ LE + R Sbjct: 95 LKAGASGFLLKNTRPEELLTAIRSVAAGDAVVSPRITRRLLENLRPHIPDGSSADRDEWL 154 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ RE L G G ++ EIA L L+ TV ++LG KL+ +RIQA+ A Sbjct: 155 SRLSAREREVLIKVGCGLSNTEIAATLYLAEATVKSHLGRILQKLELRDRIQAVIFAYES 214 Query: 232 GYI 234 I Sbjct: 215 RLI 217 >gi|282864949|ref|ZP_06274003.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282560374|gb|EFB65922.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 224 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L G+++ S+ + + A G +++ +++E + R A Sbjct: 96 LEAGVAGFLLKDSDPEEILRAIRHIAAGHGTLDRTLTRRIVAEYVERRRLRPVTAARGID 155 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L L G ++E+IA L + V TV ++L KL +R+QA A + Sbjct: 156 ILTAREREILLLLAQGMSNEQIAGALVVEVATVKSHLARLLPKLGVQSRLQAAVWAYQNR 215 Query: 233 YIC 235 + Sbjct: 216 VVT 218 >gi|262370436|ref|ZP_06063762.1| two component transcriptional regulator [Acinetobacter johnsonii SH046] gi|262314778|gb|EEY95819.1| two component transcriptional regulator [Acinetobacter johnsonii SH046] Length = 228 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 15/124 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL--------ELFKKRSSA 170 NGYV+ + + + G +++ + + Sbjct: 105 AGANGYVLKERDDAEVLMSIRSILRGGAPIDPFIAREILNQISTSNTPQTERVEQLDGQD 164 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RET L L G ++ EIAE+L +S +TV +++ KL R +A++ A Sbjct: 165 YDQLTNRETEILNLVAQGLSNREIAEQLFVSRYTVESHIKHIYRKLSVSKRTKAVSTARS 224 Query: 231 FGYI 234 G + Sbjct: 225 LGIL 228 >gi|261378734|ref|ZP_05983307.1| nitrate/nitrite response regulator protein NarL [Neisseria cinerea ATCC 14685] gi|269144889|gb|EEZ71307.1| nitrate/nitrite response regulator protein NarL [Neisseria cinerea ATCC 14685] Length = 218 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 43/113 (38%), Gaps = 8/113 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSA-----ARNLTERE 178 GY++ L + A G ++ + A +LT RE Sbjct: 98 GARGYLLKNINADFLLESIRKAADGDNVFSPEMTAKLVRSLISPQPAQGTQTLSSLTPRE 157 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L G++++ IA L L+ TV ++ + KL+ +R+QA AI Sbjct: 158 MEILGYLAAGHSNKIIARHLNLAESTVKVHVQNLLRKLNLSSRVQAAVYAIHH 210 >gi|114764692|ref|ZP_01443877.1| DNA-binding response regulator, LuxR family protein [Pelagibaca bermudensis HTCC2601] gi|114542892|gb|EAU45913.1| DNA-binding response regulator, LuxR family protein [Roseovarius sp. HTCC2601] Length = 214 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 40/111 (36%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 LG GYV+ + + G Y L S LT RE + L Sbjct: 97 LGHGAMGYVLKDVPTDEIKRAIDAVMSGERYLCTGAEGALRPVMSGGREQLTNREQTVLL 156 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A L +SV TV + + KL + A+ G + Sbjct: 157 QLAQGKSNKEVALALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 207 >gi|326445496|ref|ZP_08220230.1| response regulator receiver protein [Streptomyces clavuligerus ATCC 27064] Length = 244 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITDFLELFKKRSSAA----- 171 L G++ L + + A ++I+ ++ + ++ ++ A Sbjct: 112 LRAGACGFLPKDISPEELVTALHVVHTGEAVVAPRLLTRLISSYVTVPQRPATPAAGTGP 171 Query: 172 ----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE +L G + IA ++ +S TV ++ + KL +R QA+ Sbjct: 172 TGVPDGLTPREREVWRLIAAGLDNTGIAAEMFVSPSTVKNHITALFAKLQVRDRAQAVIA 231 Query: 228 AIRFGYI 234 A G + Sbjct: 232 AYEAGLV 238 >gi|302524105|ref|ZP_07276447.1| two-component system response regulator [Streptomyces sp. AA4] gi|302433000|gb|EFL04816.1| two-component system response regulator [Streptomyces sp. AA4] Length = 222 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 46/119 (38%), Gaps = 10/119 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR-------NLT 175 GYV T L V+ A G ++ L+ F R +A LT Sbjct: 104 AGARGYVTKTISSKELVRAVVRVADGDAVFSPRLAGFVLDAFADRPGSAPINDPELDLLT 163 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L GY +EIA +L +SV TV ++ S K NR + A + Sbjct: 164 PRERDVLRLLARGYAYKEIASELFISVKTVETHVSSVLRKTQLSNRYELSRWASDRRLV 222 >gi|222081230|ref|YP_002540593.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gi|221725909|gb|ACM28998.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 897 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 39/73 (53%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 +L ++A LT+RE S L+L G +++EI KL LS +TV +L + KL+ R Sbjct: 824 DLLSVPTAATGGLTDRERSVLRLLSAGLSNKEIGRKLDLSNNTVKFHLRNIYAKLNVTTR 883 Query: 222 IQAIAKAIRFGYI 234 A+ A G + Sbjct: 884 TAAVTMARDTGIL 896 >gi|218248856|ref|YP_002374227.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8801] gi|257061918|ref|YP_003139806.1| LuxR family transcriptional regulator [Cyanothece sp. PCC 8802] gi|218169334|gb|ACK68071.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8801] gi|256592084|gb|ACV02971.1| transcriptional regulator, LuxR family [Cyanothece sp. PCC 8802] Length = 96 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 38/66 (57%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + +L+ RE L L G T+ EIAE+L +S TV+ ++ + K NR++ + A+ Sbjct: 8 SPASLSGREIEILDLVATGLTNLEIAEELEISKRTVDNHISNILTKTKTENRVELVRWAL 67 Query: 230 RFGYIC 235 ++G IC Sbjct: 68 QWGKIC 73 >gi|310640465|ref|YP_003945223.1| two component transcriptional regulator, luxr family [Paenibacillus polymyxa SC2] gi|309245415|gb|ADO54982.1| Two component transcriptional regulator, LuxR family [Paenibacillus polymyxa SC2] Length = 589 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 3/108 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETS 180 L GYV+ T + LAN + + HG +V + LTERE Sbjct: 474 LALGAEGYVLKTIDPRELANTIRLVHHGGTMITQEVAGTLFQQMTGTMKNPYGLTERELE 533 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L +G+ + IA K+ LS TV Y+ + K+ +R +AI KA Sbjct: 534 ILHCLTEGHRYKAIASKVHLSEGTVRNYISTIYSKMQVQSRDEAIEKA 581 >gi|124383175|ref|YP_001025881.1| DNA-binding response regulator [Burkholderia mallei NCTC 10229] gi|254194028|ref|ZP_04900460.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei S13] gi|254200975|ref|ZP_04907340.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|254359059|ref|ZP_04975331.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|147748587|gb|EDK55662.1| DNA-binding response regulator [Burkholderia mallei FMH] gi|148028246|gb|EDK86206.1| DNA-binding response regulator [Burkholderia mallei 2002721280] gi|169650779|gb|EDS83472.1| DNA-binding response regulator, LuxR family [Burkholderia pseudomallei S13] gi|261827167|gb|ABM99233.2| DNA-binding response regulator [Burkholderia mallei NCTC 10229] Length = 264 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 44/115 (38%), Gaps = 8/115 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF-------KKRSSAARNLTERE 178 F +GY++ + + G + E + +S LT RE Sbjct: 143 FGASGYLLKWCSPDGIVQAIRRVMAGRV-HIDPSLDEARVASAAGGRTLASPVDELTRRE 201 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L DG + EIA L +S TV+ + KL A N I A R+GY Sbjct: 202 KQVLKLIADGMRNREIASLLNISPKTVDCHRQRLMQKLGARNVATVIHWAYRYGY 256 >gi|329940271|ref|ZP_08289553.1| respose regulatory protein [Streptomyces griseoaurantiacus M045] gi|329301097|gb|EGG44993.1| respose regulatory protein [Streptomyces griseoaurantiacus M045] Length = 211 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 37/109 (33%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GY++ L + A G L + L+ RE+ LQ Sbjct: 102 AGATGYLLKAERPEELFAAIRDAAAGRAALSPPVADRLLARLRDPRPALSARESEILQQL 161 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +L KL R A+A A + Sbjct: 162 SGGLGNREIARALFISEATVKTHLQRIYGKLGVETRAGAVAVAKERRLL 210 >gi|294816579|ref|ZP_06775221.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] gi|294321394|gb|EFG03529.1| two component transcriptional regulator, LuxR family protein [Streptomyces clavuligerus ATCC 27064] Length = 223 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITDFLELFKKRSSAA----- 171 L G++ L + + A ++I+ ++ + ++ ++ A Sbjct: 91 LRAGACGFLPKDISPEELVTALHVVHTGEAVVAPRLLTRLISSYVTVPQRPATPAAGTGP 150 Query: 172 ----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE +L G + IA ++ +S TV ++ + KL +R QA+ Sbjct: 151 TGVPDGLTPREREVWRLIAAGLDNTGIAAEMFVSPSTVKNHITALFAKLQVRDRAQAVIA 210 Query: 228 AIRFGYI 234 A G + Sbjct: 211 AYEAGLV 217 >gi|256420485|ref|YP_003121138.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256035393|gb|ACU58937.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 208 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 3/115 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR---SSAARNLTERETS 180 L GYV+ T++ L V G Y + +R LT RE Sbjct: 94 LQSGAGGYVLNTADKDELLFAVHSVYAGGVYLSPVIKQAMSSERVGLQKNFPPLTRREKE 153 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L L +G T+ EIAEKL +S TVN++ KL+ N I A+ + Sbjct: 154 VLSLISEGNTNAEIAEKLFISADTVNSHRKKLLAKLEVKNTAMLIKYAVDNKLLV 208 >gi|159899994|ref|YP_001546241.1| ATP-dependent transcription regulator LuxR [Herpetosiphon aurantiacus ATCC 23779] gi|159893033|gb|ABX06113.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Herpetosiphon aurantiacus ATCC 23779] Length = 877 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 39/63 (61%) Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ERE L+L G+++ EIAE+L +++ TV ++ + KL+A +R +A+A A Sbjct: 814 EPLSEREIEVLKLLALGHSNAEIAERLVIAIGTVKRHVNNLLGKLNARSRTEAVAIARDE 873 Query: 232 GYI 234 G + Sbjct: 874 GLL 876 >gi|329938142|ref|ZP_08287593.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329302631|gb|EGG46521.1| putative two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 246 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + G ++ L+ F + LT+RE Sbjct: 131 GARGYVTKTITGSDLVASIFRVQEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 190 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 191 REVLRLIARGYAYKEIAKQLYISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 246 >gi|319951571|ref|ZP_08025372.1| regulatory protein, LuxR [Dietzia cinnamea P4] gi|319434774|gb|EFV90093.1| regulatory protein, LuxR [Dietzia cinnamea P4] Length = 205 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 2/112 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSC 181 L +G++ + L + + A G + L + K + L+ RE Sbjct: 90 LDAGAHGFLSKSLTAPELVSGIEQIAAGKRVTLTGAGLPIMGPDKWPAKEAGLSHREAEV 149 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + L G ++E+IAE+ LS++TV Y+ SA K+D R QA+A I G Sbjct: 150 VSLIVQGLSNEQIAEQCYLSLNTVKTYVRSAYRKMDVATRAQAVAWGIGNGL 201 >gi|298251835|ref|ZP_06975638.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297546427|gb|EFH80295.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 1065 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 40/73 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ + + +LT RE L L G +++EIA+ L +S+ TV ++G KL A NR Sbjct: 993 KMASREPALVVSLTRREQEVLCLLAAGASNQEIAQTLVISLDTVKKHVGRLLDKLGATNR 1052 Query: 222 IQAIAKAIRFGYI 234 QAIA+A + Sbjct: 1053 TQAIAQARARSLL 1065 >gi|295085346|emb|CBK66869.1| Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Bacteroides xylanisolvens XB1A] Length = 245 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 36/66 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + NLT RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI Sbjct: 180 PSTNLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQ 239 Query: 230 RFGYIC 235 G + Sbjct: 240 ESGLLS 245 >gi|269965326|ref|ZP_06179446.1| putative transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] gi|269829972|gb|EEZ84201.1| putative transcriptional regulator, LuxR family [Vibrio alginolyticus 40B] Length = 218 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L++ +G ++ EIA+ L +S HT+ ++L + KL+ NR QA + Sbjct: 153 EPAIEVELTRREVQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATS 212 Query: 227 KAIR 230 A R Sbjct: 213 WAKR 216 >gi|226364986|ref|YP_002782769.1| NarL family two-component response regulator [Rhodococcus opacus B4] gi|226243476|dbj|BAH53824.1| putative NarL family two-component response regulator [Rhodococcus opacus B4] Length = 223 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA----CYQVITDFLELFKKRSSAARNLTERET 179 L G++ S + V+ A G + E+ ++ A L+ RE Sbjct: 108 LQEGAAGFLPKESTRAEIVKAVLDCAQGRDVLPASLAVGLAGEVRRRSEPAGPVLSGREK 167 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L G + IA +L L+ TV ++ KL +R A+A+A+R G + Sbjct: 168 EVLALIARGQSIPTIAGELYLAPSTVKTHVQRLYEKLGVSDRAAAVAEAMRRGLL 222 >gi|91223299|ref|ZP_01258565.1| putative transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] gi|91192112|gb|EAS78375.1| putative transcriptional regulator, LuxR family protein [Vibrio alginolyticus 12G01] Length = 210 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 36/64 (56%) Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 + LT RE L++ +G ++ EIA+ L +S HT+ ++L + KL+ NR QA + Sbjct: 145 EPAIEVELTRREVQVLKMLKEGGSNMEIADSLFISEHTIKSHLYNIFRKLEVKNRTQATS 204 Query: 227 KAIR 230 A R Sbjct: 205 WAKR 208 >gi|333023482|ref|ZP_08451546.1| putative two-component response regulator [Streptomyces sp. Tu6071] gi|332743334|gb|EGJ73775.1| putative two-component response regulator [Streptomyces sp. Tu6071] Length = 227 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 3/114 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTERETS 180 L +G+++ + +L V A G + L + L+ RE Sbjct: 107 LRLGASGFLLKDASPALLVEAVRAAARGDALVSPSLTLRLLRGLAPQDPEPTVLSAREQE 166 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + G T++EI LGLS+ +V YL KL NR++ A A G + Sbjct: 167 ITEHVAQGRTNQEIGTALGLSLSSVKTYLDRVRTKLGLRNRVEIAAWAWERGLV 220 >gi|271965986|ref|YP_003340182.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] gi|270509161|gb|ACZ87439.1| response regulator receiver protein [Streptosporangium roseum DSM 43021] Length = 223 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 17/127 (13%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-------- 172 L +G+++ S L + + A G +E F + Sbjct: 93 LRAGASGFLLKDSPPEDLLTAIRVVAAGEALLTPAATRRLIERFTATPPSPADRLPESTP 152 Query: 173 ------NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT+RE L G ++ EIA L L+ T+ +L + K +A +R Q + Sbjct: 153 SRKILATLTDRERDVLARVARGMSNAEIAADLVLATSTIKTHLTNLLAKTEARDRAQLVI 212 Query: 227 KAIRFGY 233 A G Sbjct: 213 FAYESGL 219 >gi|197335139|ref|YP_002156737.1| nitrate/nitrite response regulator protein NarP [Vibrio fischeri MJ11] gi|197316629|gb|ACH66076.1| nitrate/nitrite response regulator protein NarP [Vibrio fischeri MJ11] Length = 203 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 2/101 (1%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ SE L + G A + + LE + LT RE LQ Sbjct: 96 AGADGYLLKDSEPDELIALLKEAMKGGKAYSEQVKACLEEDAQGDDKLSQLTARELEILQ 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G ++++A++L +S TV ++ S KL+ +R+ A Sbjct: 156 HVAKGMRNKQVADQLFISEATVKVHMKSLLKKLNVKSRVAA 196 >gi|138894013|ref|YP_001124466.1| response regulator [Geobacillus thermodenitrificans NG80-2] gi|134265526|gb|ABO65721.1| Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain [Geobacillus thermodenitrificans NG80-2] Length = 531 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 17/175 (9%) Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 G I + Y +D L H+ I + + + G +V + F Sbjct: 357 GAISAEMASCYQEDVLRHYGRS---IKQVAKSQVPSLRQVGDKTVME---------VPFF 404 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTE 176 VR G++ V EV + A A ++ + + + LT Sbjct: 405 VRDGYYGVLAVHLKETDEAKEAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSEQLTS 464 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L+L G ++ EI+E+L +SVHTV ++ + K+ +R Q IA + Sbjct: 465 REMDVLELLVQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQL 519 >gi|118593080|ref|ZP_01550467.1| transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] gi|118434387|gb|EAV41041.1| transcriptional regulator, LuxR family protein [Stappia aggregata IAM 12614] Length = 233 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 36/161 (22%), Positives = 57/161 (35%), Gaps = 4/161 (2%) Query: 73 GDDFLFHFNSGLLPIIWQS--IQEETVIESSGQLSVRLEGGLLPFAGIAF--PVRLGFHK 128 D FL H + + + + + + + + AG + PV Sbjct: 70 DDPFLRHCMTSPVAVATGADYLDRYDYLNERSRRLILSAAEDGFRAGFSVVAPVPEQRRA 129 Query: 129 NGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDG 188 G+ I +S + E + + +LT RE CL L G Sbjct: 130 LGWNIGSSLRRAEVERIRQEREPLIRLALVAVQNRLDGPEAVRASLTPRELECLSLIASG 189 Query: 189 YTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + IA +LG+ TV +LG+A KL A R A+A A Sbjct: 190 LRVKAIAAELGIQPVTVELHLGNARKKLGAATREHAVALAF 230 >gi|90579871|ref|ZP_01235679.1| putative nitrate/nitrite response regulator protein [Vibrio angustum S14] gi|90438756|gb|EAS63939.1| putative nitrate/nitrite response regulator protein [Vibrio angustum S14] Length = 208 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 2/103 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSC 181 L +GY++ +E L ++ G A ++ + LE ++ LT+RET Sbjct: 96 LNAGADGYLLKDTEPDELIEQLKSALCGGKAYSDIVKECLESPNTPTNILSQLTDRETQI 155 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 LQ G + +IAE+L +S TV ++ S KL +R A Sbjct: 156 LQEVAKGQRNRQIAEQLFISEATVKVHMKSLLKKLQVKSRTAA 198 >gi|82701372|ref|YP_410938.1| LuxR family transcriptional regulator [Nitrosospira multiformis ATCC 25196] gi|82409437|gb|ABB73546.1| transcriptional regulator, LuxR family [Nitrosospira multiformis ATCC 25196] Length = 267 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 14/116 (12%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----------- 173 G H YV+F+S L + +I + T + + R Sbjct: 145 GHHDCLYVVFSS-KDKLDDSTLIAMEILLPYLDTALRRVTPLPQHSCRPSLLADAPEYDL 203 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE + G T+ EI L +S +TV +L KLD NR+QAI+K Sbjct: 204 HGLSEREVEIMTWVRKGKTNAEIGSILRISSYTVKNHLHQIFRKLDVYNRVQAISK 259 >gi|254390921|ref|ZP_05006131.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] gi|197704618|gb|EDY50430.1| two component transcriptional regulator [Streptomyces clavuligerus ATCC 27064] Length = 242 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEV-------IIEAHGACYQVITDFLELFKKRSSAA----- 171 L G++ L + + A ++I+ ++ + ++ ++ A Sbjct: 110 LRAGACGFLPKDISPEELVTALHVVHTGEAVVAPRLLTRLISSYVTVPQRPATPAAGTGP 169 Query: 172 ----RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT RE +L G + IA ++ +S TV ++ + KL +R QA+ Sbjct: 170 TGVPDGLTPREREVWRLIAAGLDNTGIAAEMFVSPSTVKNHITALFAKLQVRDRAQAVIA 229 Query: 228 AIRFGYI 234 A G + Sbjct: 230 AYEAGLV 236 >gi|254430257|ref|ZP_05043960.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] gi|197624710|gb|EDY37269.1| DNA-binding response regulator [Cyanobium sp. PCC 7001] Length = 291 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 2/94 (2%) Query: 143 NEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGL 200 V G Y Q + ++ + LT RE L G ++ EIA L L Sbjct: 193 AAVQAVCCGGVYIDQTLRTVVQGIPQNQRPLEPLTPRELEVLAQVARGCSNVEIAGSLYL 252 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 SV TV +L + KL A +R A + +G I Sbjct: 253 SVDTVKTHLQNVLRKLPARDRAHAAVLGVCWGLI 286 >gi|134287108|dbj|BAF50712.1| putative two component regulator [Streptomyces virginiae] Length = 277 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 34/72 (47%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 + LT RE+ L L G ++ EIA L LS HTV +++ + KL +R Sbjct: 202 RRAEVSDVDPDELTARESEVLDLIARGLSNAEIAGALMLSEHTVKSHVQNLLGKLRLRSR 261 Query: 222 IQAIAKAIRFGY 233 +QA+ A G Sbjct: 262 VQAVVYAYEIGL 273 >gi|13472199|ref|NP_103766.1| response regulatory protein [Mesorhizobium loti MAFF303099] gi|14022944|dbj|BAB49552.1| respose regulatory protein [Mesorhizobium loti MAFF303099] Length = 211 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 38/66 (57%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +A L+ RE L L +G ++ IA +L +SVHT ++ + +KL A NR AIA A Sbjct: 144 AARPALSPREAEVLALLAEGAPNKVIARRLNISVHTAKFHVAAILIKLGAANRTDAIAIA 203 Query: 229 IRFGYI 234 +R G + Sbjct: 204 MRQGLV 209 >gi|158314279|ref|YP_001506787.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158109684|gb|ABW11881.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 211 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 6/112 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLTE---RET 179 +GY++ L + A G V L + + L RE Sbjct: 98 AGASGYLLKQIRGNDLVGAIRTIAAGRSLLDPAVTQKVLARLRDEPAEDEQLAALGSRER 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+L +G T+ +IA + LS TV Y+ + KL +R QA A R Sbjct: 158 QILRLIAEGMTNRQIAGCVHLSEKTVKNYVSAILGKLGLTSRTQAAVFAARL 209 >gi|296139583|ref|YP_003646826.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296027717|gb|ADG78487.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 213 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 7/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNLTE 176 L +G+++ ++ L V A G VIT +LT Sbjct: 94 LAAGASGFLLKSAGGDELIRGVQAVAAGDAVLDPKVTRAVITSLPAPPTAVHPDLSSLTG 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L G G ++ +IA +L + TV ++ +KL +R+QA A + G Sbjct: 154 RERDVLAGLGAGLSNYQIARRLEIGEATVKTHVSRVLMKLGVQSRVQAAVIAAQSGL 210 >gi|158318427|ref|YP_001510935.1| two component LuxR family transcriptional regulator [Frankia sp. EAN1pec] gi|158113832|gb|ABW16029.1| two component transcriptional regulator, LuxR family [Frankia sp. EAN1pec] Length = 398 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 51/125 (40%), Gaps = 15/125 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF------------KKRS 168 L +G+++ + L + A G + L+ F + Sbjct: 255 LRAGASGFLLKDAYPEELLAGIRAVAVGDAVIAPALARRLLDAFAQHLGDALPDGERAAD 314 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE L G G+T+ EIAE+L LS TV ++G K+ A +R+QA+ A Sbjct: 315 PRLDTLTEREREILVAIGHGWTNGEIAERLVLSESTVKTHVGRMLAKIGARDRVQAVICA 374 Query: 229 IRFGY 233 G Sbjct: 375 YDLGL 379 >gi|157370075|ref|YP_001478064.1| LuxR family transcriptional regulator [Serratia proteamaculans 568] gi|157321839|gb|ABV40936.1| transcriptional regulator, LuxR family [Serratia proteamaculans 568] Length = 238 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 71/227 (31%), Gaps = 26/227 (11%) Query: 6 LTGKKSSSLQELSPRLHLIQNRIKARNFALYTINSALDFPRRQQLICELHNYDLDSGDIP 65 L +S + L + +A F ++ +P + + N+ + Sbjct: 8 LMDALLTSQPDRKVFLSQLAPCAQALGFEYFSYTVFSCYPASRPKMLIEGNFPECYLEDY 67 Query: 66 NILIETYGDDFLFHFNSGLLPIIWQS---IQEETVIESSGQLSVRL-----------EGG 111 L D + + L W + + Q +R G Sbjct: 68 RKLRVYLQDPVIEQAHHSTLQFYWDEHFYQDKPELWWRMAQFGIREGWSQSVKDCYGRLG 127 Query: 112 LLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA 171 +L FAG + PV+ S NE + + Sbjct: 128 ILTFAGKSIPVQ------------SPQASARNETFFLWLAQMVHKTLREALISVNDEAIK 175 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 LT RE L+ +G TSEE A +GLS TVN ++G++ KL Sbjct: 176 DVLTLREKDILRWCSEGKTSEETALLMGLSERTVNFHIGNSIKKLSV 222 >gi|331699431|ref|YP_004335670.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326954120|gb|AEA27817.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 215 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY----QVITDFLELFKKRSSAARNLTERET 179 L GY+ S + V+ A G E+ + + L+ERE Sbjct: 100 LQEGAAGYLAKDSRRAEIVAAVLDVAKGRTVVPPELAAGLAGEIRMRAQTTGPALSERER 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 LQ G + ++A +L + V TV ++ KL +R A+A+ +R G + Sbjct: 160 EVLQAFARGLSVPQVAGELFIGVSTVKTHVQRLYEKLGVSDRAAAVAEGMRRGLV 214 >gi|256788073|ref|ZP_05526504.1| two-component system response regulator [Streptomyces lividans TK24] Length = 222 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 44/109 (40%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+++ LA + G + D S+ LT RE L+ + Sbjct: 117 AGAAGFLVKDGPVEELAGAIRRVLGGET---VVDPALAAAALSAGPSPLTARECDVLRAS 173 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T +IA L LS TV YL +A K NR +A+ A G++ Sbjct: 174 ADGATVADIAGALHLSESTVRNYLSAAIGKTGTRNRAEALRAARGQGWL 222 >gi|237718329|ref|ZP_04548810.1| transcriptional regulator [Bacteroides sp. 2_2_4] gi|229452262|gb|EEO58053.1| transcriptional regulator [Bacteroides sp. 2_2_4] Length = 255 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 35/66 (53%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + LT RE L+L G S+EIA L +S++TVN + + KL A N I+A+ Sbjct: 187 DTLDEPLTNRELEVLRLMKQGLLSKEIANTLKVSINTVNTHRQNILQKLKANNSIEAVNF 246 Query: 228 AIRFGY 233 A R G Sbjct: 247 AQRLGL 252 >gi|196250317|ref|ZP_03149010.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] gi|196210206|gb|EDY04972.1| transcriptional regulator, LuxR family [Geobacillus sp. G11MC16] Length = 552 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 67/175 (38%), Gaps = 17/175 (9%) Query: 62 GDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLLPFAGIAFP 121 G I + Y +D L H+ I + + + G +V + F Sbjct: 378 GAISAEMASCYQEDVLRHYGRS---IKQVAKSQVPSLRQVGDKTVME---------VPFF 425 Query: 122 VRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSA-----ARNLTE 176 VR G++ V EV + A A ++ + + + LT Sbjct: 426 VRDGYYGVLAVHLKETDEAKEAEVYVTALVAVGVMMMNSAAQDGSGQTVNVQMLSEQLTS 485 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L+L G ++ EI+E+L +SVHTV ++ + K+ +R Q IA + Sbjct: 486 REMDVLELLVQGCSNREISERLFISVHTVKNHITNIFQKIGVNDRSQLIALVYQL 540 >gi|325067020|ref|ZP_08125693.1| NarL family two-component response regulator [Actinomyces oris K20] Length = 199 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +G+V+ + LA V G +V+ L LT RET LQ A Sbjct: 93 GAHGFVVKDAPATELAESVRRVHAG--LRVVDPALA-ADSLIFGDSPLTARETEVLQAAA 149 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T E+A ++ LS T +L A K A R A+ A + G+I Sbjct: 150 DGATVSEVARRVHLSEGTTRNHLSQAMAKTGAPTRAAAVHIAAQKGWI 197 >gi|298482318|ref|ZP_07000505.1| transcriptional regulator, LuxR family [Bacteroides sp. D22] gi|298271605|gb|EFI13179.1| transcriptional regulator, LuxR family [Bacteroides sp. D22] Length = 255 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 36/66 (54%) Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 + NLT RE L+L G S+EIA+KL +S+HTVN + + KL N I+AI Sbjct: 190 PSTNLTNREIEVLRLIQKGLLSKEIADKLCISIHTVNIHRQNLLRKLGVQNSIEAIRLGQ 249 Query: 230 RFGYIC 235 G + Sbjct: 250 ESGLLS 255 >gi|302549213|ref|ZP_07301555.1| two-component system regulatory protein [Streptomyces viridochromogenes DSM 40736] gi|302466831|gb|EFL29924.1| two-component system regulatory protein [Streptomyces viridochromogenes DSM 40736] Length = 219 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 8/120 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFL-ELFKKRSSAARNLT 175 L G+++ L + V + A G ++I ++ + S+A LT Sbjct: 96 LRAGAAGFLVKDIVPEDLLHAVRVAARGEALLAPSITRKLIHRYVTQPPPTTSAALEELT 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 RE + LA G ++++IA + +S T ++ A KL A +R Q + A G + Sbjct: 156 SREREAVALAARGLSNDQIAGHMVISPMTAKTHINRAMTKLHAHDRAQLVVLAYESGLVT 215 >gi|51893773|ref|YP_076464.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] gi|51857462|dbj|BAD41620.1| two-component response regulator [Symbiobacterium thermophilum IAM 14863] Length = 224 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 35/118 (29%), Positives = 51/118 (43%), Gaps = 18/118 (15%) Query: 130 GYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRS---------------SAA 171 GY++ + LA + G V+ + L S +A Sbjct: 95 GYLVKSMAPEALAARIREAFRGDVPVSGSVMRNVLRAMSTPSELPPPTPGGQPGAGEAAE 154 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L+ RE L+ G T+ EIAE+LGLS +TV Y+ S KL+ NR+QA A A+ Sbjct: 155 SLLSPREAQILRRIAAGNTNREIAEQLGLSENTVKNYVKSILAKLNLENRVQAAAWAL 212 >gi|224283310|ref|ZP_03646632.1| two component transcriptional regulator, LuxR family protein [Bifidobacterium bifidum NCIMB 41171] Length = 240 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 32/141 (22%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKR----------- 167 +G+++ +E L + + A A ++I +E + Sbjct: 100 AGASGFLLKDTEPETLLSSIRTVYQGNAIIAPSATKRLIEKMMEDGYTKHGLTATDGYAD 159 Query: 168 --------------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 LTERE L G +++EIA+KL +S+ T ++ Sbjct: 160 GSSTMPGARPVAYTDPELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHIL 219 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 K++A +R+QA+ A G + Sbjct: 220 AKINARDRVQAVVFAYDNGLV 240 >gi|313680133|ref|YP_004057872.1| two component LuxR family transcriptional regulator [Oceanithermus profundus DSM 14977] gi|313152848|gb|ADR36699.1| two component transcriptional regulator, LuxR family [Oceanithermus profundus DSM 14977] Length = 196 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 9/110 (8%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQL 184 N Y LA ++ +T E +LT RE L L Sbjct: 93 SAGANAYYSKEVSPAELARRILR---------LTQNPEDSSFTPPPVPSLTPREREVLDL 143 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ E+ + LGL TV YL KLDA NRI+A+ +A R G++ Sbjct: 144 LARGLTAREMGDILGLKPDTVRDYLKRLYGKLDAGNRIEALEQARRLGFL 193 >gi|297160587|gb|ADI10299.1| two-component system response regulator [Streptomyces bingchenggensis BCW-1] Length = 237 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 13/125 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNL-- 174 L +G+++ + L + + A G ++I L + AA Sbjct: 106 LRAGASGFLVKDTRPADLLDGIRTVAAGESLLSPGPTARLIARMLRIPAAPPPAALAAAG 165 Query: 175 ----TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 ++RE L L G + EIAE LGLS T ++ KLDA +R Q + A Sbjct: 166 LGALSDRERQVLTLVARGLNNAEIAEALGLSPLTAKTHVSRIMGKLDARDRAQLVIAAYE 225 Query: 231 FGYIC 235 G + Sbjct: 226 CGLVT 230 >gi|229822479|ref|YP_002884005.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229568392|gb|ACQ82243.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 222 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 10/120 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARNL---T 175 +++ + L V + A G V+ + A L T Sbjct: 99 AGAAAFLLKDASPEDLRAAVRVVAAGDALLAPAVTRTVLARVAASTGVDADATARLDRIT 158 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 +RE L G +++EIA +L LS T Y+ KLDA +R Q + A G + Sbjct: 159 DREREVLAAVARGLSNDEIAGELFLSPATARTYVSRLLTKLDARDRAQLVVLAYEAGLVV 218 >gi|190576052|ref|YP_001973897.1| putative LuxR family two-component response regulator [Stenotrophomonas maltophilia K279a] gi|190013974|emb|CAQ47614.1| putative LuxR family two-component response regulator [Stenotrophomonas maltophilia K279a] Length = 212 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT-----DFLELFKKRSSAARNLTERETS 180 G+++ + L + A G + F + ERE + Sbjct: 99 AGAQGFLLKDAAPADLREAIERVAAGETLLLPVSTEPVRARYRFHDEAPPTDTFGEREVA 158 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY+++EIA L L+ TV Y+ + KL +R +A+ KAI I Sbjct: 159 ILRLLAGGYSNKEIARSLFLAEGTVKNYVSAILDKLGTRDRTRAVLKAITLRII 212 >gi|184201824|ref|YP_001856031.1| NarL family two-component response regulator [Kocuria rhizophila DC2201] gi|183582054|dbj|BAG30525.1| putative NarL family two-component response regulator [Kocuria rhizophila DC2201] Length = 299 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 35/62 (56%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L G+G ++ EI ++L LS TV ++ KLDA +R+QA+ A G Sbjct: 235 TLTAREREVFELIGEGCSNGEIMQRLFLSEPTVKTHVSHILSKLDARDRVQAVVIAYETG 294 Query: 233 YI 234 + Sbjct: 295 VV 296 >gi|258650664|ref|YP_003199820.1| LuxR family two component transcriptional regulator [Nakamurella multipartita DSM 44233] gi|258553889|gb|ACV76831.1| two component transcriptional regulator, LuxR family [Nakamurella multipartita DSM 44233] Length = 191 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN-LT 175 L GYV+ + L G A +IT++L + + LT Sbjct: 71 LKAGAAGYVLKSVADRDLVEACRAVRRGEPFVYAGALTALITEYLRRSRNGDRIPTSILT 130 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++L +G++S EIA+ L +S TV+ + + KL +R+ AIR G + Sbjct: 131 PREEEIVKLIAEGHSSREIADTLVISAKTVDRHRANIMQKLGMHDRLDLTRFAIRVGLV 189 >gi|256824492|ref|YP_003148452.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687885|gb|ACV05687.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 228 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDF-----LELFKKRSSAA 171 LG +G+++ + + + V A G + ++ +L + A Sbjct: 103 LGAGADGFLLKAEDPRQIIDAVRSAAAGHSPLSPTSARSLVRLVGPGSRADLASRARELA 162 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE L G+G T+ +IA +L +S TV L K NR Q A R Sbjct: 163 AGLTERERQVAALVGEGLTTPQIAARLFVSEATVKTQLAEVQRKWGCENRTQVAVWADRA 222 Query: 232 GYIC 235 G I Sbjct: 223 GLIA 226 >gi|284991540|ref|YP_003410094.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284064785|gb|ADB75723.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 215 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 47/110 (42%), Gaps = 2/110 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSC 181 L +GY++ + + + V A G ++T + + LT+RE Sbjct: 94 LVAGADGYLLKYQDGESILDAVRCIAAGGAPVDPMVTAAVLADLRDRGQGDLLTDREKEV 153 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+L G ++ IA +L +S TV ++ ++ A +R QA A R Sbjct: 154 LELVRQGLPNKVIARRLRISEATVKTHVTRILQRIGATDRTQAALWAERR 203 >gi|15806567|ref|NP_295281.1| DNA-binding response regulator [Deinococcus radiodurans R1] gi|6459320|gb|AAF11120.1|AE001999_4 DNA-binding response regulator [Deinococcus radiodurans R1] Length = 225 Score = 90.8 bits (224), Expect = 1e-16, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 12/115 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTERE 178 Y++ + LA+ + A G A +++ DF + +LT +E Sbjct: 108 AGAISYMLKDASSDTLADAIHAAARGEVRLHPEAARRLVRDF-----RSPEMRESLTPKE 162 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T+ LQL G ++++IA + G+S TV ++ KL +R QA A+++G Sbjct: 163 TAVLQLLARGQSNKDIAAEQGVSEATVKTHVSRLLSKLGLDSRTQAALYALKYGI 217 >gi|268609438|ref|ZP_06143165.1| two component LuxR family transcriptional regulator [Ruminococcus flavefaciens FD-1] Length = 209 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 7/109 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSS---AARNLTER 177 L GY++ +F +A + G +++T EL K +S A+ ++++ Sbjct: 93 LNIGAKGYILK-QDFEGIAPALEAVMGGQSVFGDKIVTKLPELMKPKSDFNYASYGISDK 151 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 E L+L +G +++EI+ +L LS TV Y+ S KL +R Q Sbjct: 152 EKEILELVAEGKSNKEISSELFLSEGTVRNYISSLLDKLSLRDRTQLAV 200 >gi|241889344|ref|ZP_04776645.1| two-component response transcriptional regulator [Gemella haemolysans ATCC 10379] gi|241863887|gb|EER68268.1| two-component response transcriptional regulator [Gemella haemolysans ATCC 10379] Length = 199 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 4/108 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + YV+ L + G EL + ++ LT +E L Sbjct: 96 NVDAYVLKDRSIDELMKTINNVLAGNKEY----SPELMENIFNSHNPLTNQEKIILLKIK 151 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G ++EIA +L LS T+ Y+ + KL+ NR +A+ K+ G++ Sbjct: 152 EGLPNKEIANELFLSEGTIRNYISNILTKLNCKNRTEAVKKSTEEGWL 199 >gi|239928878|ref|ZP_04685831.1| chitinase two-component response regulator [Streptomyces ghanaensis ATCC 14672] gi|291437205|ref|ZP_06576595.1| response-regulator [Streptomyces ghanaensis ATCC 14672] gi|291340100|gb|EFE67056.1| response-regulator [Streptomyces ghanaensis ATCC 14672] Length = 213 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 11/121 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA----R 172 L G+++ +E L V A G ++I +F +R+ A Sbjct: 93 LRAGAAGFLLKNTEAKDLVAAVRTVARGEGIVAPAVTRRLIAEFAAKPARRTEADPAVLE 152 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +LT RE L G+G ++ IA++L ++ TV ++ KL +R+QA A G Sbjct: 153 SLTRREREVLSCLGEGLSNAGIADRLDMAEATVKTHVSRLLGKLGLRSRVQAAVLAQELG 212 Query: 233 Y 233 Sbjct: 213 I 213 >gi|260904389|ref|ZP_05912711.1| two component transcriptional regulator, LuxR family protein [Brevibacterium linens BL2] Length = 220 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLE-----LFKKRSSAA 171 L +GY++ + + + V A G ++ + E + A Sbjct: 94 LDAGASGYLLKDTPPAEIIDAVRETAEGRTILSSRHARVLLDKYSENGNNARKDQAIEAL 153 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LTERE +Q G T+ EI ++L S TV A+L S +L NR++ Sbjct: 154 SQLTEREREVVQYVAQGLTNAEIGKRLHCSPATVKAHLASIFTQLQITNRVRLAVLGHDA 213 Query: 232 GY 233 G Sbjct: 214 GL 215 >gi|91774802|ref|YP_544558.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91708789|gb|ABE48717.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 244 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAA---RNL 174 L GYV+ + + + + G + I D L + + L Sbjct: 124 LRAGATGYVLKERDDMEVVLSIRSVLRGGAPIDPFIARRIIDEFHLGSSQQAQTQQCETL 183 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE L L G + EIAE+L LS +TV ++ KL +R +A+ +A G + Sbjct: 184 SPREGEILGLVAQGMANREIAEQLHLSRYTVECHIKHIYRKLAVSSRTKAVHEARSRGLL 243 >gi|331695485|ref|YP_004331724.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326950174|gb|AEA23871.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 244 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 7/115 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN----LTERET 179 +GY+ E + V G + + +++ + AR LTERE Sbjct: 130 GVHGYLRKGVETSEIVRSVRALLRGESVFDSRTTSVVVDVLRDEDGGARPRGQMLTEREN 189 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ EIA +L +S TV ++ + KLD R + + A R G + Sbjct: 190 QVLKLLAVGMSNREIAVRLLISEATVKFHVRNLREKLDVRRRTEIVYTATRQGMV 244 >gi|257790333|ref|YP_003180939.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|317489781|ref|ZP_07948280.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|257474230|gb|ACV54550.1| two component transcriptional regulator, LuxR family [Eggerthella lenta DSM 2243] gi|316911127|gb|EFV32737.1| response regulator receiver domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 213 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 13/119 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN------- 173 L GY+I E +A + G +V+ L + + A N Sbjct: 94 LRLGAKGYLIK-QEVATIAPALRTVMAGQSVLGGEVLDRMDVLMSRGPACAENAPGGEMR 152 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LTERE++ ++L +G ++EIA +L LS TV ++ + KLD NR Q + + R Sbjct: 153 SGLTERESAIVELVAEGLDNKEIAARLYLSEGTVRNHISAILQKLDLKNRTQLVVRYYR 211 >gi|227504946|ref|ZP_03934995.1| response regulator [Corynebacterium striatum ATCC 6940] gi|227198455|gb|EEI78503.1| response regulator [Corynebacterium striatum ATCC 6940] Length = 225 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 14/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA--------- 171 L +G+V+ +E L + + G + + + S+ Sbjct: 93 LRAGASGFVLKDAEPEELLSALRTVYRGDAVISPRATKRLVHSMRDDSTDTLSISGTDRR 152 Query: 172 --RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 +LT RE L+ G G+++ EI+E++ +S+ TV ++G K + +R+ A A Sbjct: 153 VLESLTAREQEILEAIGMGWSNTEISERMFISMPTVKTHVGRVLAKTSSRDRVHAALFAY 212 Query: 230 RFGYIC 235 R G + Sbjct: 213 RTGVVS 218 >gi|212710861|ref|ZP_03318989.1| hypothetical protein PROVALCAL_01929 [Providencia alcalifaciens DSM 30120] gi|212686558|gb|EEB46086.1| hypothetical protein PROVALCAL_01929 [Providencia alcalifaciens DSM 30120] Length = 206 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 2/102 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSS--AARNLTERETSCL 182 GY++ SE ML N + G + L + + LT RE L Sbjct: 97 DAGAQGYLLKNSELDMLLNSLKKAMEGHHVFSEKVYQHLITRHQTKDPLSTLTRRECEIL 156 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 G ++EI++ L +S TV ++ + KL +R++A Sbjct: 157 HEMAAGLKNKEISQLLFISEETVKVHIRNVLKKLRVRSRLEA 198 >gi|154503122|ref|ZP_02040182.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149] gi|153796116|gb|EDN78536.1| hypothetical protein RUMGNA_00946 [Ruminococcus gnavus ATCC 29149] Length = 206 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 7/114 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSS---AARNLTER 177 L GY++ ++ L + G ++I+ EL + + +++ER Sbjct: 93 LKLGAKGYLLK-QDYESLIPALHAVHSGQTVFGNEIISKIPELLQTGPTFHLEDYDISER 151 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E ++L DG +++EIA +L LS TV YL S KLD +R Q R Sbjct: 152 ELEIIRLIADGLSNKEIASRLFLSEGTVRNYLSSILDKLDLRDRTQVAVFYYRH 205 >gi|126740186|ref|ZP_01755875.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. SK209-2-6] gi|126718641|gb|EBA15354.1| DNA-binding response regulator, LuxR family protein [Roseobacter sp. SK209-2-6] Length = 215 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 49/102 (48%), Gaps = 3/102 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 G+ + E L + A G +++ F+++ K + +L+ +E + L+ Sbjct: 102 AGAAGFAPRSGEAEGLLETCLDVAAG---KMVFPFIDVRKMQQDPIHSLSRKERAILESL 158 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 G ++ E+++ L +S +TV +L + KL NR QAIA Sbjct: 159 AKGMSNRELSKALQISTNTVKFHLSNIYEKLSVKNRAQAIAY 200 >gi|297569017|ref|YP_003690361.1| two component transcriptional regulator, LuxR family [Desulfurivibrio alkaliphilus AHT2] gi|296924932|gb|ADH85742.1| two component transcriptional regulator, LuxR family [Desulfurivibrio alkaliphilus AHT2] Length = 207 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 57/116 (49%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA----CYQVITDFLELFKKRSSAARNL-TERE 178 L +GY++ L + E H ++ + F+++ S +NL + RE Sbjct: 93 LKAGASGYLLKGCSPRELIESI-QELHLGGAPMSPKIARRLIMEFREKGSLQQNLLSTRE 151 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ++ G++ ++IA KL +S HTV++++ KL A++R AI KA + G + Sbjct: 152 VEIIREVEKGFSYKDIAAKLFISPHTVHSHIKKIYEKLHAMDRQDAILKARKCGLL 207 >gi|239636020|ref|ZP_04677034.1| transcriptional regulatory protein DegU [Staphylococcus warneri L37603] gi|239598291|gb|EEQ80774.1| transcriptional regulatory protein DegU [Staphylococcus warneri L37603] Length = 224 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 11/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFL----ELFKKRSSAAR 172 L GY++ + L + +G Y ++ +F+ + + S + Sbjct: 95 LRNGAKGYILKNAPDEQLLLAIRTVYNGETYVDMKLTTSLVNEFVNSSNQEYTDTSDPFK 154 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L++RE L L GY ++EIAEKL +SV TV A+ KL+ ++ + + A++ Sbjct: 155 VLSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMNKLELKSKPELVEYAMKKK 214 Query: 233 YI 234 + Sbjct: 215 LL 216 >gi|149925599|ref|ZP_01913863.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] gi|149825716|gb|EDM84924.1| two component transcriptional regulator, LuxR family protein [Limnobacter sp. MED105] Length = 237 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 19/130 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFL------------ELF 164 L +GY++ L ++ A+G Q+++ + Sbjct: 106 LEAGASGYLLKDYSNEELIEHILEVANGGSPISPLIARQLLSKMQTPRTVDAEYPQNKAE 165 Query: 165 KKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 + S A ++T+RE +Q G+T++EIA ++G+S HTV ++ KL +R +A Sbjct: 166 QDESQKACSITDRELKVIQQVARGFTAQEIAAQMGISTHTVATHVKRIYKKLHVHSRSEA 225 Query: 225 IAKAIRFGYI 234 + +A G + Sbjct: 226 VYEATLLGLL 235 >gi|331699089|ref|YP_004335328.1| two component LuxR family transcriptional regulator [Pseudonocardia dioxanivorans CB1190] gi|326953778|gb|AEA27475.1| two component transcriptional regulator, LuxR family [Pseudonocardia dioxanivorans CB1190] Length = 227 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 47/119 (39%), Gaps = 10/119 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN-------LT 175 GYV T LA+ V G ++ L++F R AA LT Sbjct: 109 AGARGYVTKTISGRDLADAVRRVHGGDAVFSPRLAGFVLDVFSDRPGAAPPGDPELDLLT 168 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L GY +EIA +L +SV TV ++ S K NR + A + Sbjct: 169 RRERDVLRLLARGYAYKEIAGELFISVKTVETHVSSVLRKTQLSNRYELSRWASDRRLV 227 >gi|284990174|ref|YP_003408728.1| two component LuxR family transcriptional regulator [Geodermatophilus obscurus DSM 43160] gi|284063419|gb|ADB74357.1| two component transcriptional regulator, LuxR family [Geodermatophilus obscurus DSM 43160] Length = 201 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G+++ + LA + G + + D + A L+ RE L+ A Sbjct: 97 GAAGFLVKDAPVAELAKAIRAVVAG---ERVIDRDLAAAALAIGATPLSTREADVLREAA 153 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T +IA +L LS TV YL SA K A R++A A G++ Sbjct: 154 DGATVADIARRLFLSEGTVRNYLSSAIGKTGARTRVEAARVAADKGWL 201 >gi|77457134|ref|YP_346639.1| ATP-dependent transcription regulator LuxR [Pseudomonas fluorescens Pf0-1] gi|77381137|gb|ABA72650.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens Pf0-1] Length = 850 Score = 90.8 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 46/99 (46%) Query: 135 TSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEI 194 S MLA I I + E ++S+ L++RE LQL G ++ +I Sbjct: 751 CSLQQMLAELYIRCVEMPSRWRIDEAAEQVDEQSTTINPLSQRELKVLQLIAFGDSNLQI 810 Query: 195 AEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 AEKL +S+HTV ++ KL R QA+AKA Sbjct: 811 AEKLFISLHTVKTHVRRIHSKLGVERRTQAVAKAKLLNL 849 >gi|256824283|ref|YP_003148243.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] gi|256687676|gb|ACV05478.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Kytococcus sedentarius DSM 20547] Length = 223 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 4/113 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL----FKKRSSAARNLTERETSC 181 +GY++ + L + V A G L + AA +T+RE Sbjct: 110 AGASGYLLKDAPPTSLRDGVARAAAGETVLAPAAAAHLVTGARATTAEAAPRVTDRELQV 169 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ G T+ ++A +LG+ TV +L L NR A+ +A G + Sbjct: 170 LRGVARGQTNRQVARELGIGEATVKTHLVHVFTTLGVTNRTAAVGRARELGLL 222 >gi|326771790|ref|ZP_08231075.1| two-component system response regulator TcsR2 [Actinomyces viscosus C505] gi|326637923|gb|EGE38824.1| two-component system response regulator TcsR2 [Actinomyces viscosus C505] Length = 203 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +G+V+ + LA V G +V+ L LT RET LQ A Sbjct: 97 GAHGFVVKDAPATELAESVRRVHAG--LRVVDPALA-ADSLVFGDSPLTARETEVLQAAA 153 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T E+A ++ LS T +L A K A R A+ A + G+I Sbjct: 154 DGATVSEVARRVHLSEGTTRNHLSQAMAKTGAPTRAAAVHIAAQKGWI 201 >gi|300785587|ref|YP_003765878.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299795101|gb|ADJ45476.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 225 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 8/118 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC--------YQVITDFLELFKKRSSAARNLT 175 L GY+ + +A + A G + S+ LT Sbjct: 105 LRAGALGYLTKDAGRDHIAQAIRTAAAGQAVLDPTIHARLLAATAHHPDTPPSAPPDGLT 164 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RET L G+++ EIA +L +S T+ + K+ A +R QA+ A + Sbjct: 165 TRETEVLTQLAAGHSNTEIARQLFVSETTIKTRINHIYAKIGAADRAQAVRYAYQHHL 222 >gi|282860391|ref|ZP_06269457.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282564127|gb|EFB69663.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 222 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 15/126 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELF------------KKRS 168 L +G+++ + L + + A G + L+ + ++ + Sbjct: 94 LRAGASGFLVKDAMPEELLSGIRAVASGDAVVAPSLTRRLLDAYAHHLPSTPGARPEREN 153 Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 +LTERE L + G G+T+ EIA +L L+ TV ++ K + +R+QA+ A Sbjct: 154 PRIASLTEREREILTVIGQGWTNTEIATRLHLAESTVKTHVTRILAKTGSRDRVQAVILA 213 Query: 229 IRFGYI 234 + Sbjct: 214 YDTRLV 219 >gi|261251165|ref|ZP_05943739.1| nitrate/nitrite response regulator protein [Vibrio orientalis CIP 102891] gi|260938038|gb|EEX94026.1| nitrate/nitrite response regulator protein [Vibrio orientalis CIP 102891] Length = 205 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 3/110 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG--ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ +E L + + G A Q + +L + SS LT+RE L+ Sbjct: 93 AGADGYLLKDTEPDELIDLLKDSLRGNKAYSQEVATYLAERENTSSVFDELTDREMQILK 152 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFG 232 G +++IA+ L +S TV ++ S KL +R A + R+G Sbjct: 153 EVAKGLRNKQIADTLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERYG 202 >gi|302536960|ref|ZP_07289302.1| response regulator [Streptomyces sp. C] gi|302445855|gb|EFL17671.1| response regulator [Streptomyces sp. C] Length = 217 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 14/124 (11%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS------- 169 L G+++ ++ L V A G ++I +F R+ Sbjct: 94 LRAGAAGFLLKDADAAELIAAVRTVARGEGLIAPAVTRRLIAEFAAPKAVRAPVRPGAAA 153 Query: 170 AARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 A +LT RE L G+G ++ EIA +L ++ TV ++ KL+ +R+QA A Sbjct: 154 AVESLTRREREVLGALGEGLSNAEIAVRLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQ 213 Query: 230 RFGY 233 G Sbjct: 214 ELGI 217 >gi|329947902|ref|ZP_08294834.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523526|gb|EGF50624.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 203 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 3/108 (2%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 +G+V+ + LA V G +V+ L LT RET LQ A Sbjct: 97 GAHGFVVKDAPATDLAESVRRVHAG--LRVVDPALA-ADSLVFGDSPLTARETEVLQAAA 153 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG T E+A ++ LS T +L A K DA R A+ A + G+I Sbjct: 154 DGATVAEVARRVHLSEGTTRNHLSQAMAKTDAPTRAAAVHIAAQKGWI 201 >gi|238062966|ref|ZP_04607675.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237884777|gb|EEP73605.1| LuxR family two-component system transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 279 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 46/117 (39%), Gaps = 6/117 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL------FKKRSSAARNLTER 177 L Y++ T L V V+ +K + LT R Sbjct: 153 LEAGAVAYLLKTILRDDLVAAVRSVVRRPTQSVLLAVSRETVERLDRQKPRTNGTPLTSR 212 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L + ++ +IA +L ++ TV +L + KL AV+R+ AI KA I Sbjct: 213 ELEVLRLTAEAMSNAQIASRLFITEATVKRHLTNIYAKLQAVSRVDAIRKATAARLI 269 >gi|296138645|ref|YP_003645888.1| LuxR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296026779|gb|ADG77549.1| two component transcriptional regulator, LuxR family [Tsukamurella paurometabola DSM 20162] Length = 223 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 43/114 (37%), Gaps = 11/114 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN--------L 174 GYV T LA+ V A G ++ L+ F RS L Sbjct: 103 AGARGYVTKTISGPELADAVRRVADGDAVFSPRLAGFVLDSFTGRSPVPEPALDPELDSL 162 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 T RE L+L GYT EIAE L +SV TV + + K NR A Sbjct: 163 TPRELEVLRLLARGYTYREIAEDLFISVKTVETHASNVLRKTQQSNRNALTRWA 216 >gi|167755537|ref|ZP_02427664.1| hypothetical protein CLORAM_01051 [Clostridium ramosum DSM 1402] gi|237734285|ref|ZP_04564766.1| response regulator [Mollicutes bacterium D7] gi|167704476|gb|EDS19055.1| hypothetical protein CLORAM_01051 [Clostridium ramosum DSM 1402] gi|229382515|gb|EEO32606.1| response regulator [Coprobacillus sp. D7] Length = 224 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 13/122 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSA---------- 170 L F +GY++ L ++ G + T LF K ++ Sbjct: 94 LKFGASGYLLKGVSMDGLYQAILTVVSGGAMINPDIATKVFRLFSKMANTNYAINVNDDN 153 Query: 171 ARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 R L + E +Q G G +++EIA+KL LS TV YL S KL+ +R Q A++ Sbjct: 154 VRELNKPEWKVIQQVGFGLSNKEIAQKLFLSEGTVRNYLSSILSKLELRDRTQLAIWAVQ 213 Query: 231 FG 232 G Sbjct: 214 TG 215 >gi|311894237|dbj|BAJ26645.1| putative two-component system response regulator [Kitasatospora setae KM-6054] Length = 206 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 3/104 (2%) Query: 131 YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYT 190 ++ + LA+ + A G + D + ++ A LT RE L LA DG Sbjct: 101 FMPKDAPPERLADAIRRVAAGGS-AIDPDLAA--RALTAPASPLTAREAQALALAADGCE 157 Query: 191 SEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 EIA +L LS TV YL +A +KLDA R+ A+ A G++ Sbjct: 158 PREIARRLHLSAGTVRNYLAAAQLKLDARTRLDAVRIAREAGWL 201 >gi|298247591|ref|ZP_06971396.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297550250|gb|EFH84116.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 230 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 19/130 (14%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL--------- 174 L +GY + + L + + A G L +S + L Sbjct: 99 LQAGASGYFLKETPVETLLDAIRSAARGEMLIQPETMARLLSHATSVSPALSVSRSQHPQ 158 Query: 175 ----------TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 T+RE L G S+EIA +LG++ TV AYL S KL+ +R A Sbjct: 159 GAGISGSIALTKRERQVLAGVAQGERSKEIAVRLGITERTVRAYLTSIYTKLNVDSRASA 218 Query: 225 IAKAIRFGYI 234 +A A+ +G + Sbjct: 219 VAVALAYGLL 228 >gi|229588468|ref|YP_002870587.1| putative LuxR family regulatory protein [Pseudomonas fluorescens SBW25] gi|229360334|emb|CAY47191.1| putative LuxR-family regulatory protein [Pseudomonas fluorescens SBW25] Length = 909 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 37/68 (54%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 + A L+ RE + L+L G +++EI+ +L +S+HTV + KL R QA+A+ Sbjct: 842 APAHETLSARELAVLKLIAQGCSNQEISNQLFISLHTVKTHASHINSKLGVERRTQAVAR 901 Query: 228 AIRFGYIC 235 A G + Sbjct: 902 AKAMGLLA 909 >gi|157374068|ref|YP_001472668.1| two component LuxR family transcriptional regulator [Shewanella sediminis HAW-EB3] gi|157316442|gb|ABV35540.1| two component transcriptional regulator, LuxR family [Shewanella sediminis HAW-EB3] Length = 209 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 5/107 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSAAR---NLTERETS 180 +GY++ +E +L ++ H + + DFL K + NLT RE Sbjct: 99 AGADGYLLKDTEPDLLLEKLKNAMQGHRVISESVEDFLYELKDAAEEEEWLNNLTPRELQ 158 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LQ +G ++ I+E L +S TV ++ + K +A +R + + Sbjct: 159 ILQQVAEGKSNRVISELLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205 >gi|116696270|ref|YP_841846.1| response regulator [Ralstonia eutropha H16] gi|113530769|emb|CAJ97116.1| response regulator, NarL-family [Ralstonia eutropha H16] Length = 218 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 10/117 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKR---SSAARNLTE 176 GY+I E L + A G +++ F A LT Sbjct: 98 GARGYLIKNIETEALIAGIRRAAAGEPVISDSMTAKLVAQFRAPAPVAAARQDEAPRLTA 157 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE +Q G +++EIA LG++ TV ++ + KL+ +R+Q A+ G Sbjct: 158 REREIVQGLARGESNKEIARDLGVAESTVKIHVQNILKKLNLASRVQVAVYAVEHGL 214 >gi|318040623|ref|ZP_07972579.1| transcriptional regulator, LuxR family protein [Synechococcus sp. CB0101] Length = 79 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 36/63 (57%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ERE + L G T++EI E+L +S TV+ ++ + K A NR+ + A+ G Sbjct: 2 DLSERELEIIDLVAQGLTNQEIGERLMISKRTVDNHVSNVFTKTGAKNRVALLNWAMDHG 61 Query: 233 YIC 235 IC Sbjct: 62 KIC 64 >gi|21229587|ref|NP_635504.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766463|ref|YP_241225.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] gi|21111059|gb|AAM39428.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571795|gb|AAY47205.1| two-component system regulatory protein [Xanthomonas campestris pv. campestris str. 8004] Length = 210 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 5/114 (4%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQ--VITDFLEL---FKKRSSAARNLTERETS 180 G+++ + L + A G V TD + F+ + + ERE + Sbjct: 97 AGAQGFLLKDAAPDDLHEAIARVAAGETLLQPVSTDPVRARYQFRDQQAPRETFNEREVA 156 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY+++EIA L L+ TV Y+ + KL +R +A+ KAI I Sbjct: 157 ILRLLAGGYSNKEIARTLFLAEGTVKNYVSTILDKLGTRDRTRAVLKAITLRVI 210 >gi|330811658|ref|YP_004356120.1| response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379766|gb|AEA71116.1| putative response regulator, NarL family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 849 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 39/71 (54%) Query: 162 ELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 ++ S+ L+ RE L+L G+++++IAE+L +S+HTV + KL R Sbjct: 776 QVEPPASAEDTLLSHRELEVLELIAQGHSNQQIAERLFISLHTVKTHARRIHSKLGVQRR 835 Query: 222 IQAIAKAIRFG 232 QA+AKA G Sbjct: 836 TQAVAKAKVMG 846 >gi|163839051|ref|YP_001623456.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162952527|gb|ABY22042.1| two-component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 158 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 11/114 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-----------QVITDFLELFKKRSSAAR 172 L G+++ ++ + +I A G Q+++ + Sbjct: 37 LRAGAAGFLLKSASAEEIVQAIITVATGGSVLAPEVTKTVIEQMLSASSRAEIRTPPGLA 96 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 LT RE L+ G G+T+++IA +LG++ TV ++ KLD V+R+QA Sbjct: 97 ELTARELEVLRAVGAGWTNQQIANRLGIAETTVKTHVSRIFNKLDLVSRVQAAI 150 >gi|29829419|ref|NP_824053.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29606526|dbj|BAC70588.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 213 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 11/120 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L G+++ +E L V A G ++I +F + Sbjct: 93 LRAGACGFLLKNTEARQLLEAVRTVARGEGLISPAVTRRLIAEFAAKPVREPGPDPVILD 152 Query: 174 -LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE L G G ++ EIA +L ++ TV ++ KL+ +R+QA A G Sbjct: 153 VLTRREREVLSCLGRGMSNAEIAARLDMAEATVKTHVSRLLGKLELRSRVQAAVLAQELG 212 >gi|310287681|ref|YP_003938939.1| transcriptional regulator, LuxR family [Bifidobacterium bifidum S17] gi|309251617|gb|ADO53365.1| transcriptional regulator, LuxR family [Bifidobacterium bifidum S17] Length = 255 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 32/141 (22%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKR----------- 167 +G+++ +E L + + A A ++I +E + Sbjct: 115 AGASGFLLKDTEPETLLSSIRTVYQGNAIIAPSATKRLIEKMMEDGYTKHGLTATDGYAD 174 Query: 168 --------------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 LTERE L G +++EIA+KL +S+ T ++ Sbjct: 175 GSSTMPGARPVAYTDPELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHIL 234 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 K++A +R+QA+ A G + Sbjct: 235 AKINARDRVQAVVFAYDNGLV 255 >gi|172037420|ref|YP_001803921.1| two-component response regulator [Cyanothece sp. ATCC 51142] gi|171698874|gb|ACB51855.1| two-component response regulator [Cyanothece sp. ATCC 51142] Length = 244 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 42/77 (54%) Query: 158 TDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLD 217 + L+ ++ + +LT +E L+L G + +IAE L ++V TV ++ S KL Sbjct: 167 IEALDADTQKMVDSSSLTPKELEVLELIVAGCNNAQIAEALFVTVGTVKTHVRSILNKLC 226 Query: 218 AVNRIQAIAKAIRFGYI 234 A +R QA +A+R G + Sbjct: 227 ANDRTQAAVRALRSGLV 243 >gi|119489708|ref|ZP_01622467.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] gi|119454445|gb|EAW35594.1| Transcriptional Regulator, LuxR family protein [Lyngbya sp. PCC 8106] Length = 100 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 43/73 (58%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + +S +L++RE + L G T++EIAE+L +S TV+ ++ + K + NR+ Sbjct: 1 MTQSKSHTPVSLSDRELQVVDLIATGLTNQEIAEQLEISKRTVDNHISNILTKTETENRV 60 Query: 223 QAIAKAIRFGYIC 235 ++ A++ G +C Sbjct: 61 ALVSWALKSGKVC 73 >gi|29830688|ref|NP_825322.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29607800|dbj|BAC71857.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 200 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I H V + S+ LT RE L+ Sbjct: 93 LEAGVRGFVPKTVSAQRLA-EIIRTVHAGNRYVDPELAA--DAISAGDSPLTVREAEVLE 149 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG EIAE+ L+ TV YL SA KL A NR A+ A G++ Sbjct: 150 FAADGAPVAEIAERAALAEGTVRNYLSSAVSKLGAENRHTAVRLARERGWV 200 >gi|322688905|ref|YP_004208639.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] gi|320460241|dbj|BAJ70861.1| two-component response regulator [Bifidobacterium longum subsp. infantis 157F] Length = 299 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A G Sbjct: 239 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 298 Query: 234 I 234 + Sbjct: 299 V 299 >gi|319949743|ref|ZP_08023770.1| two component transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] gi|319436589|gb|EFV91682.1| two component transcriptional regulator, LuxR family protein [Dietzia cinnamea P4] Length = 226 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 45/123 (36%), Gaps = 15/123 (12%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR---------- 172 GYV T LA+ V A G ++ L+ F + + Sbjct: 103 AGARGYVTKTITGDDLADAVRRVADGDAVFSPRLAGFVLDAFARAAPGPEERGEPVHDPE 162 Query: 173 --NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 +LT RE L+L GYT EIAE+L +SV TV + + K NR A Sbjct: 163 VDSLTPREKEVLRLLARGYTYREIAEELFISVKTVETHASNVLRKTQQSNRHALTRWAQS 222 Query: 231 FGY 233 Sbjct: 223 RHL 225 >gi|302866185|ref|YP_003834822.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315502743|ref|YP_004081630.1| two component transcriptional regulator, luxr family [Micromonospora sp. L5] gi|302569044|gb|ADL45246.1| response regulator receiver [Micromonospora aurantiaca ATCC 27029] gi|315409362|gb|ADU07479.1| two component transcriptional regulator, LuxR family [Micromonospora sp. L5] Length = 212 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 6/112 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK---KRSSAARNLTERET 179 GYV+ L + V A G + T LE + ++ ++LTE+E Sbjct: 96 AGAAGYVLKQIRGTDLVDAVRRVAAGQSLLDPAITTRVLERIRSGVEQPRELKSLTEQER 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ +G T+ EIA K+ L+ TV Y+ S KL R QA A R Sbjct: 156 RILEYVAEGLTNREIAGKMFLAEKTVKNYVSSVLAKLGLERRTQAAVLATRL 207 >gi|256786460|ref|ZP_05524891.1| LuxR family two component system response regulator [Streptomyces lividans TK24] Length = 204 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 48/111 (43%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V T LA E+I H V + S+ LT RE L+ Sbjct: 97 LAAGVRGFVPKTVSAQRLA-ELIRTVHAGNRYVDPELAA--DAISAGDSPLTAREAEVLE 153 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 A DG EIAE+ L+ TV YL SA KL A NR A+ A G++ Sbjct: 154 HAADGAPVSEIAERAALAEGTVRNYLSSAASKLGAENRHAAVRLARERGWV 204 >gi|254453849|ref|ZP_05067286.1| two component transcriptional regulator, LuxR family [Octadecabacter antarcticus 238] gi|198268255|gb|EDY92525.1| two component transcriptional regulator, LuxR family [Octadecabacter antarcticus 238] Length = 204 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 1/111 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCL 182 L G++ + L N + A G Y I + + + LTERE L Sbjct: 93 LEAGAAGFIPKSLPAKSLINAIKFMAMGEQYAPIDFMTAIKETLHNPLVDKLTERELQML 152 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 + +G ++++IA L + TV ++ + K+ NR QA A G Sbjct: 153 KGLTEGKSNKQIARDLEIREPTVKLHMKTLYRKMGVENRTQAAMIASEAGL 203 >gi|111024941|ref|YP_707361.1| response regulator, two-component system [Rhodococcus jostii RHA1] gi|40787253|gb|AAR90170.1| putative two-component system response regulator [Rhodococcus sp. DK17] gi|51338943|dbj|BAD36797.1| hypothetical protein [Rhodococcus sp. RHA1] gi|110823920|gb|ABG99203.1| response regulator, two-component system [Rhodococcus jostii RHA1] Length = 212 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 4/112 (3%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA---RNLTERETSCL 182 +G ++ A + G V + +S A LT RE L Sbjct: 102 AGADGCLVKDISGQDFATAIHRV-SGGIRVVDPRLAGSRRVVTSEALYRAGLTRREYEVL 160 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + A G ++ EIA++L L+ +TV YL SA KL+A NR++AIA+A + Sbjct: 161 RFAAMGNSNPEIAQELSLARNTVKTYLQSAMQKLNARNRVEAIARAHELRLL 212 >gi|329767671|ref|ZP_08259190.1| hypothetical protein HMPREF0428_00887 [Gemella haemolysans M341] gi|328839021|gb|EGF88609.1| hypothetical protein HMPREF0428_00887 [Gemella haemolysans M341] Length = 199 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 4/108 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 + + YV+ L + G EL + + L+ +E L Sbjct: 96 NVDAYVLKDRSIDELMKTINNVLGGNKEY----SPELMENIFTNHNPLSNQEKIILLKIK 151 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++EIA +L LS T+ Y+ + KL+ NR +A+ K+ G++ Sbjct: 152 EGLSNKEIANELFLSEGTIRNYISNILTKLNCKNRTEAVKKSTEEGWL 199 >gi|326792209|ref|YP_004310030.1| LuxR family transcriptional regulator [Clostridium lentocellum DSM 5427] gi|326542973|gb|ADZ84832.1| two component transcriptional regulator, LuxR family [Clostridium lentocellum DSM 5427] Length = 210 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 10/111 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL--------- 174 + + +GY+ + LA E + E H + + E+ K A L Sbjct: 94 MAYGASGYLFKDMPYDQLA-ECVKEVHEGRFMMPQKVAEVLAKNIYAPEALKKRENPYDF 152 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 TERE ++ DG+T+++IA+ L +S TV Y+ + K NR++A Sbjct: 153 TEREVQIAEMMKDGFTNKQIAKTLYISEGTVKNYVSNIYAKTQTENRVEAA 203 >gi|332710029|ref|ZP_08429984.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] gi|332351172|gb|EGJ30757.1| two-component response regulator, CheY subfamily [Lyngbya majuscula 3L] Length = 241 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 8/105 (7%) Query: 130 GYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGY 189 GY++ S N I +C D+ ++ ++ LTERE + L+L GY Sbjct: 144 GYLLKNSIKSPGNNFSGITLINSCE---PDYYQILRE-----NPLTERELTVLELIVAGY 195 Query: 190 TSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T++EIAE+L L + TV ++ S KL +R QA +A+R G + Sbjct: 196 TNDEIAERLLLGLGTVKTHIRSVLWKLCCDDRTQAAVQALRSGLV 240 >gi|319781056|ref|YP_004140532.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317166944|gb|ADV10482.1| response regulator receiver [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 219 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/120 (24%), Positives = 48/120 (40%), Gaps = 10/120 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV------ITDFLELFKKRSS----AARN 173 L N Y+ + L + +G Y ++D + ++ + Sbjct: 97 LSAGANAYLTKDGDPEELGAAIEAVKNGGTYLAKTVRFAVSDIGRESEPIAAQEILSPVP 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT RE LQL G + +IAE+LG+S+ T + + KL N + A A+R G Sbjct: 157 LTRRERQILQLVAQGMITRDIAERLGISLPTARKHRENLMGKLSLHNTAELTAYAVRLGL 216 >gi|255037324|ref|YP_003087945.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] gi|254950080|gb|ACT94780.1| transcriptional regulator, LuxR family [Dyadobacter fermentans DSM 18053] Length = 216 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLE------LFKKRSSAARNLTER 177 +GY++F +E + + G Y +V+ E + + S L++R Sbjct: 100 GVSGYIVFEAELDEWERAIRAVSEGKVYYGQEVMLKLAESSMDKYMQEPAPSTRDFLSKR 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L Y++ +IA +L +S TV + + KL N + A+R G + Sbjct: 160 EIEILRLVASEYSTNKIASELCISDKTVETHRRNLFQKLGVRNSVGLTKIAVRMGVV 216 >gi|268593225|ref|ZP_06127446.1| DNA-binding response regulator UhpA [Providencia rettgeri DSM 1131] gi|291311274|gb|EFE51727.1| DNA-binding response regulator UhpA [Providencia rettgeri DSM 1131] Length = 208 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 2/114 (1%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF--KKRSSAARNLTERETSC 181 L + Y+ L V G CY L ++ + + LT RE Sbjct: 94 LDAGASAYLTKRCGPEELVQAVRSVHQGGCYLCADAMRALRHSPQQQQSLQELTPREREV 153 Query: 182 LQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G + + IAE+L LS TV+ + + KL N I + A+ I Sbjct: 154 FDLLVAGLSVKVIAEQLELSHKTVHVHRANILGKLQCENTIDLVHYALEHNLIS 207 >gi|148253086|ref|YP_001237671.1| LuxR transcriptional regulator [Bradyrhizobium sp. BTAi1] gi|146405259|gb|ABQ33765.1| Regulatory protein, LuxR [Bradyrhizobium sp. BTAi1] Length = 201 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 33/62 (53%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 NL RE L G TS EIA+ LGLS TV+ ++ +A +KL R QA KA+ Sbjct: 138 NLNHREIETLTWVARGKTSAEIAKILGLSKRTVDFHIDNARIKLGVATRTQAAIKAVTGK 197 Query: 233 YI 234 I Sbjct: 198 LI 199 >gi|294501457|ref|YP_003565157.1| spore germination regulator [Bacillus megaterium QM B1551] gi|295706805|ref|YP_003599880.1| spore germination regulator [Bacillus megaterium DSM 319] gi|294351394|gb|ADE71723.1| spore germination regulator [Bacillus megaterium QM B1551] gi|294804464|gb|ADF41530.1| spore germination regulator [Bacillus megaterium DSM 319] Length = 74 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 36/70 (51%) Query: 163 LFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + +K LT+RE +L T++EIA +L +S TV ++ +A KL R Sbjct: 1 MKEKEFQPKPLLTKREREVFELLVQDKTTKEIASELFISEKTVRNHISNAMQKLGVKGRS 60 Query: 223 QAIAKAIRFG 232 QA+ + +R G Sbjct: 61 QAVVELLRMG 70 >gi|261212443|ref|ZP_05926728.1| transcriptional regulatory protein UhpA [Vibrio sp. RC341] gi|260838374|gb|EEX65030.1| transcriptional regulatory protein UhpA [Vibrio sp. RC341] Length = 208 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 1/113 (0%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCL 182 L GY+ L + + A G Y + L ++ +LT+RE Sbjct: 94 LDAGAQGYLSKRCGPSELVSAIRTVASGRSYLCADALVNLSNPDINNVLADLTKREVEVF 153 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L G +EIA+ L LS TV+ + + KL+ N + I A++ + Sbjct: 154 DLLVQGKEVKEIAQTLFLSHKTVHVHRANILSKLNLTNNVDVIRFALQHHLLV 206 >gi|239934239|ref|ZP_04691192.1| putative two-component system response regulator [Streptomyces ghanaensis ATCC 14672] gi|291442685|ref|ZP_06582075.1| two-component system regulatory protein [Streptomyces ghanaensis ATCC 14672] gi|291345580|gb|EFE72536.1| two-component system regulatory protein [Streptomyces ghanaensis ATCC 14672] Length = 220 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 48/121 (39%), Gaps = 9/121 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAA--RNL 174 L G+++ + V + A G ++I ++ + A L Sbjct: 96 LRAGAAGFLVKDVVPEDFLHAVRVAARGDALLAPSITRKLINRYVAQPPPTGTGAGLEGL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T+RE + L G +++EIA ++ +S T ++ A KL +R Q + A G + Sbjct: 156 TDREREAVALVAQGLSNDEIAGRMVISPLTAKTHVNRAMTKLRVRDRAQLVVLAYESGLV 215 Query: 235 C 235 Sbjct: 216 T 216 >gi|169630793|ref|YP_001704442.1| two-component LuxR family response regulator [Mycobacterium abscessus ATCC 19977] gi|169242760|emb|CAM63788.1| Putative two-component system response regulator, LuxR family [Mycobacterium abscessus] Length = 215 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 36/114 (31%), Positives = 45/114 (39%), Gaps = 11/114 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN--------L 174 GYV T LA+ V A G ++ L+ F RS+A L Sbjct: 96 AGARGYVTKTISGSELADAVRRVAGGDAVFSPRLAGFVLDSFTGRSNAPEPALDPELDSL 155 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 T RE L+L GYT EIAE L +SV TV + + K NR A Sbjct: 156 TPRELEVLRLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWA 209 >gi|111223193|ref|YP_713987.1| putative two-component system response regulator [Frankia alni ACN14a] gi|111150725|emb|CAJ62426.1| putative two-component system response regulator [Frankia alni ACN14a] Length = 211 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 6/111 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNLT---ERET 179 GY++ + L + A G V L ++ + R L ERE Sbjct: 98 AGAAGYLLKQIKGTDLVGAIRTIAAGRSLLDPAVTQRVLTRLREGPAEDRKLAALGERER 157 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 L L +G T+ +IA ++ LS TV Y+ + KL+ +R QA A R Sbjct: 158 QILVLIAEGLTNRQIAGRIHLSEKTVKNYVSAILEKLELSSRTQAAVYATR 208 >gi|86740192|ref|YP_480592.1| two component LuxR family transcriptional regulator [Frankia sp. CcI3] gi|86567054|gb|ABD10863.1| two component transcriptional regulator, LuxR family [Frankia sp. CcI3] Length = 231 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 46/112 (41%), Gaps = 6/112 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNL---TERET 179 GYV+ L + V A G V L ++ + L T++E Sbjct: 118 AGAAGYVLKQIRGTALVDAVRQVAAGKSLLDPAVTPRVLVRLREGPAEDERLSGLTDQER 177 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+L +G T+ +IA ++ L+ TV Y+ S KL +R QA A R Sbjct: 178 RILRLIAEGLTNRQIASRMFLAEKTVKNYVSSMLSKLGLESRTQAAVFATRL 229 >gi|298249263|ref|ZP_06973067.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297547267|gb|EFH81134.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 889 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 49/118 (41%) Query: 117 GIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTE 176 G F + ++ + + Q + D + SS+ L+E Sbjct: 772 GYVFTFTEEGAEMARLLKAVHAAQRTGSLALRLAPEYLQRLLDACAERRTSSSSHILLSE 831 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE ++L G +++EIA+ L +++ TV ++ KL +R QAIA+A + Sbjct: 832 REREIVRLLASGLSNQEIADHLVIAMSTVKWHVRQIFNKLGVNSRTQAIAQARELNVL 889 >gi|260362480|ref|ZP_05775413.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus K5030] gi|260894575|ref|ZP_05903071.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus Peru-466] gi|308094902|ref|ZP_05892254.2| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AN-5034] gi|308086485|gb|EFO36180.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus Peru-466] gi|308092124|gb|EFO41819.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AN-5034] gi|308113367|gb|EFO50907.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus K5030] Length = 210 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ +E L E++ +AH A Q + +L +LT+RET L+ Sbjct: 99 GADGYLLKDTEPDELV-ELLKQAHQGDKAYSQEVAKYLSERSDHEDVFDSLTDRETQILR 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234 G+ +++IA++L +S TV ++ S KL +R A + RFG I Sbjct: 158 EVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERFGDI 209 >gi|237880797|gb|ACR33055.1| response regulator [Actinoplanes garbadinensis] Length = 231 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV--ITDFLELFKKRSSAA---------- 171 L G+++ S+ L V A G+ + + R SAA Sbjct: 102 LRGGACGFLLRDSQPEQLVAAVRALAEGSIVLAPEASSVVVRAGSRGSAAGAGSPACERV 161 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 + L++RE S L+L G G T+ EI+ +L LS TV ++ KL NR+QA A Sbjct: 162 KQLSDREQSILRLLGAGLTNAEISRQLFLSAATVKEHVSVILSKLGVANRVQAAVLAYAS 221 Query: 232 GY 233 G Sbjct: 222 GL 223 >gi|226305431|ref|YP_002765389.1| NarL family two-component response regulator [Rhodococcus erythropolis PR4] gi|226184546|dbj|BAH32650.1| putative NarL family two-component response regulator [Rhodococcus erythropolis PR4] Length = 219 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 45/116 (38%), Gaps = 11/116 (9%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARN--------LT 175 GYV T LA V A G ++ L+ F RS+A LT Sbjct: 101 GARGYVTKTISGSELAEGVRRVAGGDAVFGPRLAGFVLDSFTGRSNAPEPQLDPELDSLT 160 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 RE L+L GYT EIAE L +SV TV + + K NR A R Sbjct: 161 PRELEVLRLLARGYTYREIAEDLVISVKTVETHASNVLRKTQQSNRNALTRWAHRR 216 >gi|186682185|ref|YP_001865381.1| LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186464637|gb|ACC80438.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 215 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 40/114 (35%), Gaps = 9/114 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQ---------VITDFLELFKKRSSAARNLTER 177 GY++ +E L + G + + LT R Sbjct: 97 GAKGYLLKDTEPDELMLAIRSVYKGQTLLGPGLFEKALIPIPVPVPSVEPPPELAQLTPR 156 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 E L+L G + EIAE L LS +TV Y+ + +L +R QA A Sbjct: 157 ELDVLRLIASGANNREIAESLFLSENTVKNYVTNILSRLSLRDRTQAALFAHSL 210 >gi|322390963|ref|ZP_08064469.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] gi|321142338|gb|EFX37810.1| DNA-binding response regulator [Streptococcus parasanguinis ATCC 903] Length = 199 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 4/111 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L + YV+ L + G EL + + L+ +E + L+ Sbjct: 93 LKAGVDAYVLKERRITDLMATLHTVLAGQKEY----SPELMEGILTHPNPLSPQEKAVLK 148 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++EIA++L LS T+ Y+ + KLDA NR +A A G++ Sbjct: 149 EVAKGASNQEIADRLFLSNGTIRNYMSTILTKLDAENRTEAAKIAHEKGWL 199 >gi|261250785|ref|ZP_05943359.1| transcriptional regulator VpsT [Vibrio orientalis CIP 102891] gi|260937658|gb|EEX93646.1| transcriptional regulator VpsT [Vibrio orientalis CIP 102891] Length = 222 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 53/91 (58%), Gaps = 5/91 (5%) Query: 143 NEVIIEAHGACYQVITDFLELFK-----KRSSAARNLTERETSCLQLAGDGYTSEEIAEK 197 ++++ + +V D++E F+ S A NLT+RE ++L G G ++ +IA++ Sbjct: 122 DKIMNDEMWLSRKVAQDYIEHFRCANTVTTSQAYANLTKREKEIMRLLGHGASNVQIADE 181 Query: 198 LGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 L +S +TV +L + K++A NR+QA+ A Sbjct: 182 LFVSENTVKTHLHNIFKKINAKNRLQALLWA 212 >gi|227833142|ref|YP_002834849.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|262182367|ref|ZP_06041788.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] gi|227454158|gb|ACP32911.1| two-component system response regulator [Corynebacterium aurimucosum ATCC 700975] Length = 202 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 47/111 (42%), Gaps = 3/111 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L +G+++ + LA+ + H + + + L++RE + Sbjct: 95 LQAGVDGFLVKDTPPDELADAIRRV-HSGLRVIDPQLAQ--DILFTPDNPLSDREAEVCR 151 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L G S +IA +L LS TV ++ + K A NR +A +A G+I Sbjct: 152 LLLRGLGSADIASQLHLSGGTVRNHVSAIMAKTRAGNRFEAARRAEANGWI 202 >gi|154251602|ref|YP_001412426.1| regulatory protein LuxR [Parvibaculum lavamentivorans DS-1] gi|154155552|gb|ABS62769.1| regulatory protein LuxR [Parvibaculum lavamentivorans DS-1] Length = 921 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 8/121 (6%) Query: 122 VRLGFHKNGYVIFTSEF------LMLANEVIIEAHGACYQVITDFLELFKKRSSAA--RN 173 +RL + + + ++ EA ++ D S Sbjct: 800 LRLLHEARAALPKFPDLPQKDSVSAYLDRLLSEAGEFAPALMPDAGHDENDDISPHLLEE 859 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L+L +G++++ +A++L LS +TV +L + KL NR+QA++ A FG Sbjct: 860 LTDREREILRLVSNGFSNKALADRLSLSTNTVKWHLRNIFEKLQIGNRMQAVSVARHFGL 919 Query: 234 I 234 I Sbjct: 920 I 920 >gi|330466590|ref|YP_004404333.1| two component LuxR family transcriptional regulator [Verrucosispora maris AB-18-032] gi|328809561|gb|AEB43733.1| two component transcriptional regulator, luxr family protein [Verrucosispora maris AB-18-032] Length = 212 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 6/112 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFK---KRSSAARNLTERET 179 +GYV+ L + V A G + T L+ + ++ ++LTE+E Sbjct: 96 AGASGYVLKQIRGTDLVDAVRRVAAGQSLLDPAITTRVLDRIRSGVEQPRELQSLTEQER 155 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ +G T+ EIA K+ L+ TV Y+ S KL R QA A R Sbjct: 156 RILEYVAEGLTNREIAGKMFLAEKTVKNYVSSVLAKLGLERRTQAAVLATRL 207 >gi|163842188|ref|YP_001626593.1| two component response regulator [Renibacterium salmoninarum ATCC 33209] gi|162955664|gb|ABY25179.1| two component response regulator [Renibacterium salmoninarum ATCC 33209] Length = 225 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 3/105 (2%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAARNLTERETS 180 L Y+ + + + A G V + K + LTERE+ Sbjct: 112 LAAGARSYLTKDAGRDRILAAIRSTASGQATFDVAVARRLISGLKPSKPSFPELTERESE 171 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 L L G ++EIA++ +SV TV ++ + KL +R QAI Sbjct: 172 ILALIAAGRNNQEIAQESFVSVATVKTHINNIFAKLQLRDRAQAI 216 >gi|62249397|gb|AAX77678.1| ExpR [Pectobacterium carotovorum subsp. carotovorum] Length = 245 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 70/199 (35%), Gaps = 17/199 (8%) Query: 51 ICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQS-IQEETVIESSGQLSVRLE 109 I + N+ + +I + D + + + P W + T ++ S ++ E Sbjct: 44 ILIISNHHDEWREIYRANNYQHIDPVVITALNKITPFPWDEDLLVSTQLKMSKIFNLSRE 103 Query: 110 GGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLAN-------------EVIIEAHGACYQV 156 + G F + + + + + N ++ H + Sbjct: 104 HNI--TNGYTFVLHDHNNNLVMLSIMIDESNVNNIDDVIENNKDKLQMTLMNIHAETISL 161 Query: 157 ITDFLELFKKRSSAARNL-TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVK 215 + + + S +++ ++RE L A G T +EIA L + TV ++G+ K Sbjct: 162 YREMIRNKEDERSNDKDIFSQRENEILYWASMGKTYQEIALILNIKTGTVKFHIGNVVKK 221 Query: 216 LDAVNRIQAIAKAIRFGYI 234 L +N AI I I Sbjct: 222 LGVLNAKHAIRLGIELQLI 240 >gi|186687174|ref|YP_001870317.1| two component LuxR family transcriptional regulator [Nostoc punctiforme PCC 73102] gi|186469477|gb|ACC85276.1| two component transcriptional regulator, LuxR family [Nostoc punctiforme PCC 73102] Length = 210 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 7/109 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARNLTE 176 L GY++ + +A+ + + G +V + +S L++ Sbjct: 94 LQMGALGYLLKRTPAQEIASAIRSVSQGYSQLGPTIALKVFSQLKSSQPSPNSYQDLLSK 153 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 RE L+L G G ++EIA++L LS TV Y+ KL+ +RIQA Sbjct: 154 REIGVLKLVGQGRNNQEIAQELHLSEGTVKNYVTQILNKLEMRDRIQAA 202 >gi|256827097|ref|YP_003151056.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] gi|256583240|gb|ACU94374.1| response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein [Cryptobacterium curtum DSM 15641] Length = 215 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 47/120 (39%), Gaps = 8/120 (6%) Query: 123 RLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK--------RSSAARNL 174 L GYV+ S +L + A G Y L K + L Sbjct: 94 TLRGGAAGYVLKNSSTEVLLGAIRKVATGETYIEPNMAQALSGKLHGQSGVAEKNPYHEL 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + RE L GYT++E A+KL +SV TV + KL +R + + A+++ + Sbjct: 154 SSREFEIFSLLAQGYTNKEAADKLFISVKTVETHRSKIYAKLGVNSRAELVHLALKYHLL 213 >gi|256395178|ref|YP_003116742.1| LuxR family transcriptional regulator [Catenulispora acidiphila DSM 44928] gi|256361404|gb|ACU74901.1| two component transcriptional regulator, LuxR family [Catenulispora acidiphila DSM 44928] Length = 226 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/111 (28%), Positives = 48/111 (43%), Gaps = 8/111 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAAR-----NLTER 177 GYV + LA+ V A G + ++ L+ F +AAR LT R Sbjct: 110 AGARGYVTKSISGAELADAVRRVADGDAFFSPRLAGFVLDAFASGGAAARDEELDRLTPR 169 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 E L+ GY +E+A +L +S+ TV ++ S KL NR + A Sbjct: 170 EREVLRFIARGYAYKEVARELVISIKTVETHVSSVLRKLQLSNRRELTRWA 220 >gi|297563788|ref|YP_003682761.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848237|gb|ADH70255.1| two component transcriptional regulator, LuxR family [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 232 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 6/112 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN---LTERETS 180 G+++ + +L V A G +V L F +A LT RE Sbjct: 118 GAVGFLLKDAGPALLVEAVRAAARGDALVSPRVTVRLLRHFAAAPRSAPGDGGLTVRELD 177 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 ++ G T+ E+A +L ++V TV +L S KL A NR++ A A R G Sbjct: 178 IVRAVARGLTNTEVAGELFVTVSTVKTHLASVQAKLGARNRVEVAAWAYRNG 229 >gi|254227764|ref|ZP_04921195.1| HTH DNA binding domain family [Vibrio sp. Ex25] gi|262395807|ref|YP_003287660.1| nitrate/nitrite response regulator protein [Vibrio sp. Ex25] gi|151939806|gb|EDN58633.1| HTH DNA binding domain family [Vibrio sp. Ex25] gi|262339401|gb|ACY53195.1| nitrate/nitrite response regulator protein [Vibrio sp. Ex25] Length = 210 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 5/112 (4%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ +E L E++ +AH A Q ++ +L + LT+RET L+ Sbjct: 99 GADGYLLKDTEPDELV-ELLKQAHQGDKAYSQEVSKYLSERSGQEDVFDTLTDRETQILR 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234 G+ +++IA++L +S TV ++ S KL +R A + RFG I Sbjct: 158 EVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERFGDI 209 >gi|54026123|ref|YP_120365.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54017631|dbj|BAD59001.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 285 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%) Query: 149 AHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAY 208 HG C ++ L + S A L+ RE L G T++E+A++L L TV +Y Sbjct: 202 LHGVCARLTR---MLTGETSPTAPKLSRRELDVLSEVALGCTNQEVAQRLSLGPETVKSY 258 Query: 209 LGSATVKLDAVNRIQAIAKAIRFGYI 234 L +A KLDA +R +A+ A R G + Sbjct: 259 LRNAMTKLDAHSRHEAVVTARRLGLL 284 >gi|240142741|ref|YP_002967254.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Methylobacterium extorquens AM1] gi|240012688|gb|ACS43913.1| DNA-binding response regulator in two-component regulatory system wtih UhpB [Methylobacterium extorquens AM1] Length = 220 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY--------QVITDFLELFKKRSSAARNLT 175 L GY++ S L V A G Y + A L+ Sbjct: 96 LRAGARGYLLKRSAADDLLRAVRAVASGGIYLDPSIAGHALADPSSVGGPGPGEAGEALS 155 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RET L+L G++++EIA ++ LSV +V Y A KL R + I A G++ Sbjct: 156 PRETEVLRLIAQGFSNKEIARRIDLSVKSVETYKARAAEKLGLRTRAEIIRYAAAQGWL 214 >gi|161830943|ref|YP_001596915.1| LuxR family transcriptional regulator [Coxiella burnetii RSA 331] gi|161762810|gb|ABX78452.1| transcriptional regulator, LuxR family [Coxiella burnetii RSA 331] Length = 216 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 5/123 (4%) Query: 117 GIAFPVRL-GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRS--SAA 171 G P+RL G++ +S+ L + G Y I L L K S Sbjct: 86 GELLPMRLLDVGVRGFITKSSDSGELERAIRAVHSGQRYISSAIASRLALSKTTPTKSPF 145 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 L+ R+ L L G +EEIA++L ++ TVN++ KL N ++ I A+++ Sbjct: 146 DQLSHRQMEVLLLLAKGMKAEEIAKQLHITTKTVNSHRYRMFDKLGVKNDVELIKLAVQY 205 Query: 232 GYI 234 G I Sbjct: 206 GVI 208 >gi|298244378|ref|ZP_06968184.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] gi|297551859|gb|EFH85724.1| two component transcriptional regulator, LuxR family [Ktedonobacter racemifer DSM 44963] Length = 212 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSS-AARNLTER 177 GY++ E L + A G A ++T + + +L+ + Sbjct: 96 AGARGYIVKDIERFDLKRSIRAVARGEGAIDPKAAAVLMTQLRRAPQTNPELSLESLSSQ 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 + L+ G +S EIA+KL LS +T+ Y+ +L+ NR +A+ A++ G++ Sbjct: 156 QLVILRFVAQGLSSREIAKKLYLSENTIKGYVQEILHRLNVKNRTEAVMVAVKHGWL 212 >gi|91223978|ref|ZP_01259241.1| nitrate/nitrite response regulator protein [Vibrio alginolyticus 12G01] gi|91190889|gb|EAS77155.1| nitrate/nitrite response regulator protein [Vibrio alginolyticus 12G01] Length = 210 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 5/112 (4%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ +E L E++ +AH A Q ++ +L ++ LT+RE+ L+ Sbjct: 99 GADGYLLKDTEPDELV-ELLKQAHQGDKAYSQEVSKYLSERSEQEDVFDTLTDRESQILR 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234 G+ +++IA++L +S TV ++ S KL +R A + RFG I Sbjct: 158 EVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERFGDI 209 >gi|77919001|ref|YP_356816.1| two component signal transduction response regulator [Pelobacter carbinolicus DSM 2380] gi|77545084|gb|ABA88646.1| transcriptional regulator, LuxR family [Pelobacter carbinolicus DSM 2380] Length = 214 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFL-------ELFKKRSSAARNLTERET 179 NGYV ++ L IIE A + + +L + A NLT+ E Sbjct: 102 GANGYVAKNTKIDELIK--IIEDFAAGRESHSPYLLNLAVKWRQRQDDGGAEHNLTKTEI 159 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+ +G T+ EIA+ +S+ T+ ++ KL+ NR++A+A A + I Sbjct: 160 KVLKHIAEGKTNNEIAQIQFVSIETIKTHVQRIFKKLEVGNRMEAVAVARKKNII 214 >gi|302544316|ref|ZP_07296658.1| LuxR family DNA-binding response regulator [Streptomyces hygroscopicus ATCC 53653] gi|302461934|gb|EFL25027.1| LuxR family DNA-binding response regulator [Streptomyces himastatinicus ATCC 53653] Length = 268 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 10/118 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN----------LT 175 GY++ ++ +A+ + A G +E+ + +AR+ LT Sbjct: 145 AGACGYLLKSASGDEIASAIRSAAEGETLIPAGTLVEVLSRHRESARSTAEQTGRLESLT 204 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE L L G G + +AE+L +S TV ++ KL+ ++++A+AKA +G+ Sbjct: 205 RREQEILTLMGQGLDNRAVAEQLSISYATVRTHVRKILEKLEVRSQLEAVAKATEWGF 262 >gi|302525732|ref|ZP_07278074.1| two-component system response regulator [Streptomyces sp. AA4] gi|302434627|gb|EFL06443.1| two-component system response regulator [Streptomyces sp. AA4] Length = 217 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 10/115 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN------- 173 L G+++ + E L V + A G QV + F +A Sbjct: 94 LRAGAAGFLLKSVEAPRLIEAVRLVAAGEGVLAPQVTKRLIAAFASTPAAPSPAPTGLAD 153 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 LTERE L G G ++ EI +L + TV ++ KL +R+QA A Sbjct: 154 LTEREREVLGCLGAGLSNAEIGARLYIGEATVKTHVSRVLAKLGLRSRVQAAILA 208 >gi|269836233|ref|YP_003318461.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] gi|269785496|gb|ACZ37639.1| two component transcriptional regulator, LuxR family [Sphaerobacter thermophilus DSM 20745] Length = 223 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 8/117 (6%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGA-------CYQVITDFLELFKKRSSAARN-LTER 177 Y++ S + + + A G ++ ++ L K + R LT+R Sbjct: 100 AGAKSYLLKNSRSEEVIEAIHVAASGGSTIDPALAPALMREYQRLLTKTPTNTRQQLTQR 159 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E + L+L +GY + +IAE+L L+ TV L + K+ +R QA+ AI G + Sbjct: 160 ELTLLRLLANGYNNRQIAEQLQLAESTVKNNLSALFQKIGVRDRTQAVLFAISQGLV 216 >gi|222082450|ref|YP_002541815.1| two-component response regulator protein [Agrobacterium radiobacter K84] gi|221727129|gb|ACM30218.1| two-component response regulator protein [Agrobacterium radiobacter K84] Length = 214 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 45/108 (41%), Gaps = 6/108 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAA------RNLTER 177 L GYV+ LA + A G Y T L + +A R LT+R Sbjct: 96 LRSGAKGYVLKGVGSRTLAEILRTVASGETYVAPTLSARLISGQGAAPAKADLIRELTDR 155 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAI 225 E+ LQL G ++++I KL L TV ++ KL NR +A Sbjct: 156 ESEVLQLVATGLSNKQIGLKLDLHEKTVKHHMTQIFTKLGVANRTEAA 203 >gi|219667253|ref|YP_002457688.1| LuxR family transcriptional regulator [Desulfitobacterium hafniense DCB-2] gi|219537513|gb|ACL19252.1| two component transcriptional regulator, LuxR family [Desulfitobacterium hafniense DCB-2] Length = 217 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 10/121 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFL-------ELFKKRSSAARN 173 L GYV+ + + L + + A G + + +F+ +K S + Sbjct: 97 LQVGAKGYVLKKAADVELLSAIRTVARGEMFIYPTMAAEFVYRHLVSPREPEKESKKLKQ 156 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ERE L+ G+T+++IA+ L +SV TV Y KL+ R + + A+ G Sbjct: 157 LSERELEVLRNLALGHTNQDIADLLHVSVKTVETYKARVMEKLEMHKRAELVRYAMENGI 216 Query: 234 I 234 I Sbjct: 217 I 217 >gi|282861134|ref|ZP_06270199.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] gi|282563792|gb|EFB69329.1| two component transcriptional regulator, LuxR family [Streptomyces sp. ACTE] Length = 215 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 12/122 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAARN--- 173 L G+++ +E L + V A G ++I +F R A Sbjct: 94 LRAGAAGFLLKNTEAHDLLDAVRTVAGGEGMIAPAVTRRLIAEFAGATAARDGAPDPAVL 153 Query: 174 --LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G G ++ EIA +L ++ TV ++ KL+ +R+QA A Sbjct: 154 DALTRREREVLGCLGQGLSNAEIAGRLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQEL 213 Query: 232 GY 233 G Sbjct: 214 GL 215 >gi|24375469|ref|NP_719512.1| DNA-binding nitrate/nitrite response regulator [Shewanella oneidensis MR-1] gi|24350319|gb|AAN56956.1|AE015828_12 DNA-binding nitrate/nitrite response regulator [Shewanella oneidensis MR-1] Length = 209 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 5/109 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEA--HGACYQVITDFLELFKKRSSA---ARNLTERE 178 L +GY++ +E +L +++ H + + ++L K + +LT RE Sbjct: 97 LRAGADGYLLKDTEPDLLLDKLKNTMSGHRVISEEVAEYLYELKNAADEQEWVSSLTPRE 156 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LQ +G ++ I+E L +S TV ++ + K +A +R + + Sbjct: 157 LQILQQLAEGLSNRMISEHLHISEGTVKVHVKNLLRKANAKSRTEMAVR 205 >gi|229820103|ref|YP_002881629.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229566016|gb|ACQ79867.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 208 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 40/101 (39%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 YV+ T + + V A G LT E L+L Sbjct: 98 GARAYVLKTVRGAEIVDVVRAVAAGRVLLDERSLTRRRAAHEDPTSALTPSERRVLELVA 157 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 +G T+ +IAE+LG++ TV ++ S K+ R QA+A Sbjct: 158 EGLTNRDIAERLGVAEKTVKNHVTSMLSKMGLQRRTQAVAW 198 >gi|167583991|ref|ZP_02376379.1| Autoinducer-binding domain protein [Burkholderia ubonensis Bu] Length = 275 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 37/195 (18%), Positives = 72/195 (36%), Gaps = 17/195 (8%) Query: 36 YTINSALD--FPRRQQLICELHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQ 93 Y I+++L PRRQ + N+ + + + + + P++W Sbjct: 77 YVISTSLPVSSPRRQ----SISNFPAAWREWERTRSTLECNPIIRRCRASVRPLVW---- 128 Query: 94 EETVIESSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFT------SEFLMLANEVII 147 ++ +S+ L G +G + VR G + + E + Sbjct: 129 DDASFDSAPLFRTAL-GRAGVRSGWSQLVRDSRGSWGVLTLGRTAPHPASCRPYDVEPRL 187 Query: 148 EAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNA 207 + + +LTE E + L+ DG TS E+A L +SV TVN Sbjct: 188 VWLAQMFHYHLSRMCRTGPVGGNEIHLTEMEKTILRWTVDGKTSGELATILEVSVRTVNF 247 Query: 208 YLGSATVKLDAVNRI 222 ++ + +K++ N+ Sbjct: 248 HVQNILMKMNTCNKT 262 >gi|302529018|ref|ZP_07281360.1| response regulator [Streptomyces sp. AA4] gi|302437913|gb|EFL09729.1| response regulator [Streptomyces sp. AA4] Length = 220 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 42/114 (36%), Gaps = 4/114 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD----FLELFKKRSSAARNLTERET 179 L GYV + + + A G ++ + + LT RE Sbjct: 105 LDAGAVGYVTKAANGDEIGRAIHAAAAGQTVMDLSVQRTLLAAARRPAAPPEDGLTAREV 164 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+L G + EIA +L +S TV ++ K R QA+ A + GY Sbjct: 165 DVLKLVAGGRRNREIARELQVSEATVKTHVNRIFAKTGCGTRAQAVRYAHQHGY 218 >gi|284028851|ref|YP_003378782.1| LuxR family two component transcriptional regulator [Kribbella flavida DSM 17836] gi|283808144|gb|ADB29983.1| two component transcriptional regulator, LuxR family [Kribbella flavida DSM 17836] Length = 252 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 23/132 (17%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFK------------- 165 +G+++ ++ +L V G ++ +EL + Sbjct: 110 AGASGFLLKDTDPDLLVAAVRAVHRGDSLVDPASTRVLLERCVELERQVGADPVAAAPHA 169 Query: 166 ---KRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRI 222 + + L+ERE L G ++ ++A KL +S TV ++ S KL +R+ Sbjct: 170 ADGRWTGLLAQLSERERDVLVWMARGLSNRDLANKLFVSETTVKTHVSSVLSKLGLSSRV 229 Query: 223 QAIAKAIRFGYI 234 QA+ A G + Sbjct: 230 QAVVVAYEAGVV 241 >gi|213857580|ref|ZP_03384551.1| DNA-binding transcriptional activator SdiA [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 99 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 1/93 (1%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLS 201 +EV + + ++ L A ++RE L+ +G TS EIA L +S Sbjct: 7 DEVELRLQLLARESLSALTRLEDDMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSIS 66 Query: 202 VHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +TVN + + K +A N+ Q A G I Sbjct: 67 ENTVNFHQKNMQKKFNAPNKTQIACYAAATGLI 99 >gi|213692561|ref|YP_002323147.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524022|gb|ACJ52769.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458713|dbj|BAJ69334.1| two-component response regulator [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 289 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A G Sbjct: 229 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 288 Query: 234 I 234 + Sbjct: 289 V 289 >gi|170782105|ref|YP_001710438.1| putative two component system response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169156674|emb|CAQ01832.1| putative two component system response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 228 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 9/117 (7%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKR--SSAARNLTE 176 +G+V+ ++ L + A A Q++ F + R A +LT Sbjct: 105 AGASGFVLKDADPEFLLAAIRTVHAGNSVIAASATRQLLEHFDPGSRPRVAPPAFASLTS 164 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 RE LA G ++ EIA+ LS TV ++ KL +R+Q + A Sbjct: 165 REREIFVLAARGLSNAEIAQAEFLSEATVKTHVSRILAKLSLRDRVQLVVFAFEHRL 221 >gi|78183869|ref|YP_376303.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78168163|gb|ABB25260.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 92 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 38/63 (60%) Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 +L+ RE +QL +G T++EIA++L +S TV+ ++ + K + NR+ + A+ G Sbjct: 13 SLSAREIEIIQLVAEGLTNQEIADRLTISKRTVDNHVSNVFTKTGSKNRVALLNWAMDNG 72 Query: 233 YIC 235 IC Sbjct: 73 KIC 75 >gi|308051091|ref|YP_003914657.1| LuxR family transcriptional regulator [Ferrimonas balearica DSM 9799] gi|307633281|gb|ADN77583.1| two component transcriptional regulator, LuxR family [Ferrimonas balearica DSM 9799] Length = 204 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 62/179 (34%), Gaps = 5/179 (2%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 L ++ +G L+ D + + + P+ + V Sbjct: 31 LSPWEAANGPEALALLARQQPDLVL-LDLNMRPLSGLDTLRAIRRDFPRLKVVMFTVSDH 89 Query: 114 PFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN 173 P A L NGY++ SE L + G L + + A Sbjct: 90 PRDVQAV---LDAGANGYLVKDSEPEELVEGLAEVMAGQAVLTPRLEGALAEAEENWAAQ 146 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE +L +G +++ I E L +S T ++ + K D +R++ K +R G Sbjct: 147 LTPRERQIAELIAEGKSNKAIGEALFISEGTAKVHVKNLMRKTDCHSRVELALK-VREG 204 >gi|86139948|ref|ZP_01058513.1| Two Component Transcriptional Regulator, LuxR family protein [Roseobacter sp. MED193] gi|85823366|gb|EAQ43576.1| Two Component Transcriptional Regulator, LuxR family protein [Roseobacter sp. MED193] Length = 210 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 9/131 (6%) Query: 111 GLLPFAGIAFPVR-LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLE 162 GI V L +G + + SE L +G Y + + Sbjct: 79 AFCSQKGIDMAVDALDAGASGILTYNSEMSDLRAAARRVMNGDNYVQPDMAMDIFAKLRQ 138 Query: 163 LFKKRSSAAR-NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNR 221 KR A R LT RE+ ++ G T+ +I+ +L +S TV Y+GS K A NR Sbjct: 139 AEAKRKEAERLRLTARESQVVRHLMQGMTNRQISAELNISEKTVKHYVGSLKDKFGAANR 198 Query: 222 IQAIAKAIRFG 232 ++ + +A R G Sbjct: 199 LEVVLEAQRLG 209 >gi|99080717|ref|YP_612871.1| two component LuxR family transcriptional regulator [Ruegeria sp. TM1040] gi|99036997|gb|ABF63609.1| two component transcriptional regulator, LuxR family [Ruegeria sp. TM1040] Length = 233 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 43/111 (38%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L GYV+ + + + G Y L + ++ LT RE + L Sbjct: 116 LSHGAVGYVLKDVQPEEIKTAIDAVMRGEQYLCTGAAGSLSPQSQTSREALTGREQTILL 175 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G +++E+A+ L +SV TV + + KL + A+ G + Sbjct: 176 ELAQGKSNKEVAQALDISVRTVETHRKNIKRKLGISSTAGLTRYALEHGVL 226 >gi|313140461|ref|ZP_07802654.1| response regulator [Bifidobacterium bifidum NCIMB 41171] gi|313132971|gb|EFR50588.1| response regulator [Bifidobacterium bifidum NCIMB 41171] Length = 248 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 32/141 (22%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKR----------- 167 +G+++ +E L + + A A ++I +E + Sbjct: 108 AGASGFLLKDTEPETLLSSIRTVYQGNAIIAPSATKRLIEKMMEDGYTKHGLTATDGYAD 167 Query: 168 --------------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 LTERE L G +++EIA+KL +S+ T ++ Sbjct: 168 GSSTMPGARPVAYTDPELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHIL 227 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 K++A +R+QA+ A G + Sbjct: 228 AKINARDRVQAVVFAYDNGLV 248 >gi|312197193|ref|YP_004017254.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228529|gb|ADP81384.1| GAF modulated transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 278 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 38/121 (31%), Positives = 55/121 (45%), Gaps = 4/121 (3%) Query: 118 IAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARN---- 173 I P R + + SE + L+ E+ A A I D +E + A+ Sbjct: 157 IDAPRRWQVDEGALMRIDSELVALSLEMASPAAKARIAAIRDLIESSVLEAVPAQEAGYA 216 Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L L +G ++ E A++L +S TV AYL S KL NR A+ A R G Sbjct: 217 LTQRELEVLGLVAEGLSNAEAAQRLVVSPETVKAYLRSIRSKLGVSNRTAAVTVARRSGL 276 Query: 234 I 234 + Sbjct: 277 L 277 >gi|170780916|ref|YP_001709248.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] gi|169155484|emb|CAQ00593.1| putative two component response regulator [Clavibacter michiganensis subsp. sepedonicus] Length = 206 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 47/109 (43%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +GY++ + L V A G L + + +L+ RE L+L Sbjct: 97 AGASGYLLKDAPPAELLAAVRAAAAGESALAPAVASRLLARMRAPRVSLSSREIEVLRLV 156 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG ++ ++A +L ++ TV ++L KL +R A+A A G + Sbjct: 157 ADGASNTDVAARLHITDATVKSHLVHVFSKLGVSSRTAAVAAAREMGVL 205 >gi|28901050|ref|NP_800705.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus RIMD 2210633] gi|28809563|dbj|BAC62538.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus RIMD 2210633] Length = 208 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ +E L E++ +AH A Q + +L +LT+RET L+ Sbjct: 97 GADGYLLKDTEPDELV-ELLKQAHQGDKAYSQEVAKYLSERSDHEDVFDSLTDRETQILR 155 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234 G+ +++IA++L +S TV ++ S KL +R A + RFG I Sbjct: 156 EVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERFGDI 207 >gi|308178154|ref|YP_003917560.1| two-component system response regulator [Arthrobacter arilaitensis Re117] gi|307745617|emb|CBT76589.1| two-component system response regulator [Arthrobacter arilaitensis Re117] Length = 222 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 52/117 (44%), Gaps = 9/117 (7%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR------NLTER 177 GYV + +++ V A G ++ L+ F + A L++R Sbjct: 106 GARGYVTKSISGAEISDAVRRVAGGDAVFSPRLAGFVLDAFGSSTPVAEIDEELDLLSDR 165 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E ++L GY+ +E+A++L +SV TV +++ + KL NR + A+ + Sbjct: 166 ELQVMRLIARGYSYKEVAKELFISVKTVESHVSNVLRKLQLSNRHELTRWAVDRKIL 222 >gi|291482971|dbj|BAI84046.1| hypothetical protein BSNT_00932 [Bacillus subtilis subsp. natto BEST195] Length = 213 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 6/115 (5%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLEL---FKKRSSAARNLTERETS 180 GY++ + L + + G ++ E+ K+ + LTE+E Sbjct: 96 GAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRSETQLTEKEVI 155 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+ G S+ IA L +S TV + L S KL A +R +A+ A++ G + Sbjct: 156 VLKAIAKGLKSKAIAFDLDVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILT 210 >gi|260900449|ref|ZP_05908844.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AQ4037] gi|308106954|gb|EFO44494.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AQ4037] gi|328470949|gb|EGF41860.1| nitrate/nitrite response regulator protein [Vibrio parahaemolyticus 10329] Length = 210 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ +E L E++ +AH A Q + +L +LT+RET L+ Sbjct: 99 GADGYLLKDTEPDELV-ELLKQAHQGDKAYSQEVAKYLSERSDHEDVFDSLTDRETQILR 157 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234 G+ +++IA++L +S TV ++ S KL +R A + RFG I Sbjct: 158 EVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERFGDI 209 >gi|229821191|ref|YP_002882717.1| two component LuxR family transcriptional regulator [Beutenbergia cavernae DSM 12333] gi|229567104|gb|ACQ80955.1| two component transcriptional regulator, LuxR family [Beutenbergia cavernae DSM 12333] Length = 230 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 48/124 (38%), Gaps = 12/124 (9%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRS-----SAA 171 L G+++ L + V G +VI ++EL +AA Sbjct: 104 LRAGAAGFLLKDVGPDALVDAVRRVHAGDSLLDPSVTRRVIERYVELADAAPVLPGAAAA 163 Query: 172 RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 LT RE L G ++ EI L +S TV +++ S KL +R+Q + A Sbjct: 164 ARLTRREHEVLLAVARGSSNREIGAALDVSEATVKSHVRSLLAKLGLASRVQLVIFAYSE 223 Query: 232 GYIC 235 G + Sbjct: 224 GLVS 227 >gi|194291957|ref|YP_002007864.1| response regulator protein [Cupriavidus taiwanensis LMG 19424] gi|193225861|emb|CAQ71807.1| Response regulator protein; Response regulator receiver domain, HTH LuxR domain; higly similar to B. subtilis Transcriptional regulatory protein degU (Protease production enhancer protein) [Cupriavidus taiwanensis LMG 19424] Length = 223 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 2/109 (1%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY--QVITDFLELFKKRSSAARNLTERETSCL 182 YV+ + L + A G Y + FL + S+ R LT +E + L Sbjct: 98 ALGVAAYVLKEAPAHELVTAIRTVAAGGTYLNAELQAFLHTDEPPPSSRRALTPKEATVL 157 Query: 183 QLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRF 231 +L +G +++EIAE+LG SV TV + KL R + + A+ F Sbjct: 158 KLLAEGRSNKEIAERLGTSVRTVETHRLHLRRKLRVGGRAELVKYAVHF 206 >gi|153837120|ref|ZP_01989787.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AQ3810] gi|149749537|gb|EDM60283.1| nitrate/nitrite response regulator protein NarP [Vibrio parahaemolyticus AQ3810] Length = 212 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 5/112 (4%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 +GY++ +E L E++ +AH A Q + +L +LT+RET L+ Sbjct: 101 GADGYLLKDTEPDELV-ELLKQAHQGDKAYSQEVAKYLSERSDHEDVFDSLTDRETQILR 159 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA-IAKAIRFGYI 234 G+ +++IA++L +S TV ++ S KL +R A + RFG I Sbjct: 160 EVARGFRNKQIADRLFISESTVKVHMKSLLKKLQVPSRTAATVLYLERFGDI 211 >gi|37520342|ref|NP_923719.1| two-component response regulator [Gloeobacter violaceus PCC 7421] gi|35211335|dbj|BAC88714.1| two-component response regulator [Gloeobacter violaceus PCC 7421] Length = 301 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 9/115 (7%) Query: 129 NGYVIFTSEFLMLANEVIIEAHG------ACYQVITD---FLELFKKRSSAARNLTERET 179 G ++ + E L N V + G A ++I + E +K A +LT+RE Sbjct: 174 RGCLLKSVEAQELLNAVGLVLSGYLVFGKAIVRLIFEHAYLPEEPRKPGKLAISLTKREQ 233 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L L YT+ EIA+ L +S TV+++ KL N + A++ G + Sbjct: 234 EILGLIAQEYTNSEIAKHLYISPRTVDSHRARLMQKLGTRNTAGLVRIAVQQGLL 288 >gi|329947955|ref|ZP_08294856.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] gi|328523094|gb|EGF50195.1| response regulator receiver domain protein [Actinomyces sp. oral taxon 170 str. F0386] Length = 242 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 6/116 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQV------ITDFLELFKKRSSAARNLTER 177 LG +G+++ ++ + V GA + D+ + + + +L+ER Sbjct: 102 LGAGASGFLLKSAPAEEIIAAVRTVHSGAKVVAPTPTSRLIDYALASVRGADGSVHLSER 161 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L L +G ++ +IA L ++ TV +++ K A +R++ + A + GY Sbjct: 162 ERDVLHLLCEGASNRKIASLLAIAEATVKSHITGLFHKTGAASRLEIVVWAFKHGY 217 >gi|311064578|ref|YP_003971303.1| two-component response regulator [Bifidobacterium bifidum PRL2010] gi|310866897|gb|ADP36266.1| Two-component response regulator [Bifidobacterium bifidum PRL2010] Length = 248 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 53/141 (37%), Gaps = 32/141 (22%) Query: 126 FHKNGYVIFTSEFLMLANEVIIE-------AHGACYQVITDFLELFKKR----------- 167 +G+++ +E L + + A A ++I +E + Sbjct: 108 AGASGFLLKDTEPETLLSSIRTVYQGNAIIAPSATKRLIEKMMEDGYTKHGLTATDGYAD 167 Query: 168 --------------SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 LTERE L G +++EIA+KL +S+ T ++ Sbjct: 168 GSSTIPGARPVAYTDPELNLLTEREREVLVEIAHGLSNQEIADKLFISLPTAKTHVAHIL 227 Query: 214 VKLDAVNRIQAIAKAIRFGYI 234 K++A +R+QA+ A G + Sbjct: 228 AKINARDRVQAVVFAYDNGLV 248 >gi|261345944|ref|ZP_05973588.1| nitrate/nitrite response regulator protein NarL [Providencia rustigianii DSM 4541] gi|282566031|gb|EFB71566.1| nitrate/nitrite response regulator protein NarL [Providencia rustigianii DSM 4541] Length = 206 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITD--FLELFKKRSS--AARNLTERETS 180 GY++ SE ML N + G + V ++ + L + S LT RE Sbjct: 97 DAGAQGYLLKNSELDMLINSMKKAIEG--HHVFSEKVYQHLITRHQSKDPLSTLTRRECE 154 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQA 224 L G + EI++ L +S TV ++ + KL +R++A Sbjct: 155 ILHEMAAGLKNREISQLLFISEETVKVHIRNVLKKLRVRSRLEA 198 >gi|323357983|ref|YP_004224379.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] gi|323274354|dbj|BAJ74499.1| response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Microbacterium testaceum StLB037] Length = 201 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 +G+V+ + LA+ V + G +V+ L + + LTERET L A Sbjct: 96 AGASGFVVKDTPAAELADAVRRVSLG--LRVVDPALA-AESLAQGDSPLTERETDVLSAA 152 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 DG + +IA + LS TV +L SA K NR A+ A+ G++ Sbjct: 153 RDGGSIADIARTVHLSEGTVKNHLSSAIGKTGGRNRADAVRVAVERGWL 201 >gi|6094276|sp|P56644|SGAR_HYPME RecName: Full=Probable transcriptional regulatory protein sgaR Length = 211 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 3/100 (3%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAG 186 G+V T E +L V+ A G ++ ++++ +LT RE L Sbjct: 104 GAWGFVAKTEEPQVLLEAVVSVARG---RLSLPYVDIDLLNHDPLESLTARERELLAALA 160 Query: 187 DGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 +G+T+ +IA + G+S +TV +L + KL NR A+A Sbjct: 161 NGWTNLQIAARTGISRNTVKYHLKNLYDKLGVSNRAMAVA 200 >gi|327404862|ref|YP_004345700.1| LuxR family two component transcriptional regulator [Fluviicola taffensis DSM 16823] gi|327320370|gb|AEA44862.1| two component transcriptional regulator, LuxR family [Fluviicola taffensis DSM 16823] Length = 218 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 49/119 (41%), Gaps = 10/119 (8%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVIT-------DFLELFKKRSS---AARNLT 175 +GY++ L + + + +F++ K S+ L+ Sbjct: 100 AGASGYLLKDESIANLHLAIDNVLNFGAAPLAPMIAKKAYNFIQNQNKESNIQEENSPLS 159 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L G + IA++L +S HTV ++ + KL ++++A+ A++ ++ Sbjct: 160 SREMDILNCLAQGKSYTIIADELFISPHTVRKHMTNIYEKLHVNSKVEAVRLAMQKKWV 218 >gi|134103124|ref|YP_001108785.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|291003933|ref|ZP_06561906.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] gi|133915747|emb|CAM05860.1| two-component system response regulator [Saccharopolyspora erythraea NRRL 2338] Length = 223 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 10/118 (8%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHG---ACYQVITDFLELFKKRSSAARN-------LTE 176 GYV T LA+ V A G ++ L+ F + ++A LT Sbjct: 106 GARGYVTKTISGRELADAVCRVAAGDPVFSPRLAGFVLDAFAEGPNSAPVGDPELDLLTP 165 Query: 177 RETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 RE L+L GY +EIA +L +SV TV ++ S K NR + A + Sbjct: 166 RERDVLRLLARGYAYKEIASELFISVKTVETHVSSVLRKTQLSNRYELSRWATDRRLV 223 >gi|332143243|ref|YP_004428981.1| transcriptional regulator NarL [Alteromonas macleodii str. 'Deep ecotype'] gi|327553265|gb|AEA99983.1| transcriptional regulator NarL [Alteromonas macleodii str. 'Deep ecotype'] Length = 217 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 48/108 (44%), Gaps = 7/108 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACYQ-------VITDFLELFKKRSSAARNLTERET 179 +GY++ + + +++ A G + T + + S A +LT RE Sbjct: 102 GADGYLLKDMDPEDIVDKLREAALGKMVMSAKLTEVLATALRKPERAGSRALASLTSREL 161 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+L G +++ IA +L +S TV ++ KL+ +R++A Sbjct: 162 EILKLIAKGMSNKLIARELDISDGTVKVHVKHFLKKLNLRSRVEAAVW 209 >gi|289642992|ref|ZP_06475125.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] gi|289507214|gb|EFD28180.1| two component transcriptional regulator, LuxR family [Frankia symbiont of Datisca glomerata] Length = 216 Score = 90.4 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 7/117 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTER 177 GYV+ + + L + A G Y ++ + + S L+ER Sbjct: 99 ASGALGYVLKAAADIELIQAIHDVARGERYVHPTLGAALLGRDTNVEGRSVSTVAGLSER 158 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 E L+L G+T+ E+AE L LSV TV Y K+ +R + + A G + Sbjct: 159 EAEILRLLALGHTNPEMAEVLDLSVRTVETYRYRLQQKVGLRSRAELVRLAREMGLV 215 >gi|309790969|ref|ZP_07685510.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] gi|308227001|gb|EFO80688.1| two component LuxR family transcriptional regulator [Oscillochloris trichoides DG6] Length = 215 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 48/120 (40%), Gaps = 9/120 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSA--ARNL 174 L GYV+ ++ + L + + + G Y ++I+ +L A L Sbjct: 94 LAAGAVGYVLKDADAVELIHGIRVALQGGRYLSPTLAERMISAYLHQPSPDQHIDWAEML 153 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L LA G ++ EI ++L +S T + + KL + + A G + Sbjct: 154 TARERQVLILAAQGLSNAEIGDRLTISPRTAETHRTNLLRKLGLKGQTDLMHFAHERGLL 213 >gi|326777702|ref|ZP_08236967.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] gi|326658035|gb|EGE42881.1| two component transcriptional regulator, LuxR family [Streptomyces cf. griseus XylebKG-1] Length = 226 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARN-----LT 175 L +G+++ + L N V G Y +V + + +A + LT Sbjct: 103 LEEGADGFLLKADDPRELLNGVRAVGAGGAYLSARVAGRVIAGMRAHRAAHPHRSLARLT 162 Query: 176 ERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 ERE L G G ++ EIA +L L TV A++ + KL A NR++A A + Sbjct: 163 EREREVLAGLGAGLSNAEIASRLHLVEGTVKAHVSAVLAKLGARNRVEAAIAAYEADLV 221 >gi|300787834|ref|YP_003768125.1| two-component system response regulator [Amycolatopsis mediterranei U32] gi|299797348|gb|ADJ47723.1| two-component system response regulator [Amycolatopsis mediterranei U32] Length = 192 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 5/106 (4%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L G+V+ + LA V A +Q +T S LT RE L+ Sbjct: 90 LTAGAAGFVLKDASGDELAAAVR-----AAHQGVTALSPAAASALSGGGVLTPRERDVLE 144 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAI 229 L G+G ++ +IA +L L+ TV ++G+ KL +R QA A Sbjct: 145 LLGEGLSNRDIAARLRLAERTVKVHVGNVLAKLGVTSRTQAALAAR 190 >gi|156977745|ref|YP_001448651.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116] gi|156529339|gb|ABU74424.1| hypothetical protein VIBHAR_06533 [Vibrio harveyi ATCC BAA-1116] Length = 217 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 3/95 (3%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S L+ +++ G + EL K LT RE L G ++ +IA Sbjct: 123 SGENWLSRDILNRLVGYLVNLNHTVTELDTKLE---IELTRREMQVLTALCQGGSNLDIA 179 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 + L +S HTV ++L S KL+ NR+QA+A A R Sbjct: 180 DSLFVSEHTVKSHLYSIFRKLEVKNRMQAVAWAKR 214 >gi|329936902|ref|ZP_08286581.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] gi|329303827|gb|EGG47711.1| two-component system response regulator [Streptomyces griseoaurantiacus M045] Length = 215 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/110 (27%), Positives = 40/110 (36%), Gaps = 1/110 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKK-RSSAARNLTERETSCLQL 184 GY++ + L V A G L RS L+ RE L L Sbjct: 105 AGATGYLLKDAPREELFTAVRAAARGRTVLSPAVATRLVSAVRSPGGEPLSAREREVLAL 164 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L +S TV +L KL +R A+A A G + Sbjct: 165 VARGTPNREIARALFISEATVKTHLTHLYGKLGVKDRAAAVAAAYDRGIL 214 >gi|303246240|ref|ZP_07332520.1| two component transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] gi|302492303|gb|EFL52175.1| two component transcriptional regulator, LuxR family [Desulfovibrio fructosovorans JJ] Length = 218 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 11/120 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAA----RNL 174 NGYV + L + GA Y +V + L K +A NL Sbjct: 98 AGANGYVTKDAAADQLLEALRQVGRGAFYLDPTISQEVSRELLVGSPKAQAAPANAYDNL 157 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE +++ +G T++E+AE L +SV T + + KL N ++ + A R G I Sbjct: 158 TAREREVMRMVVEGLTTKEVAEALAISVKTAEHHRCNLMRKLGLQNSVELVRYASRLGLI 217 >gi|302529657|ref|ZP_07281999.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302438552|gb|EFL10368.1| conserved hypothetical protein [Streptomyces sp. AA4] Length = 276 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 8/120 (6%) Query: 117 GIAFPVRLGFHKNG--YVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNL 174 +A P + + G + T+ + +E + A + + L+L L Sbjct: 160 RMAAPTAVPAAERGDLHAELTAIAGSITDETARQRLLAVCERLRPELDL------PGVAL 213 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 T RE L+L +G T++EI+++LGL +TV +YL A KL NR+QA+ +A G + Sbjct: 214 TPREIDVLRLVSEGCTNDEISDRLGLLPNTVKSYLKHAMRKLAVSNRVQAVNRARAAGLL 273 >gi|238893250|ref|YP_002917984.1| trans-acting regulatory protein of aco operon [Klebsiella pneumoniae NTUH-K2044] gi|238545566|dbj|BAH61917.1| trans-acting regulatory protein of aco operon [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 921 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 35/67 (52%) Query: 168 SSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 L+ERE LQL +G ++EIA L +S TV ++ + KL +R QA+++ Sbjct: 854 PDIPGELSERELQILQLIAEGQMNKEIARSLAISAETVKWHIKNIYAKLKVNSRTQAMSR 913 Query: 228 AIRFGYI 234 A+ + Sbjct: 914 ALEMKLL 920 >gi|167031823|ref|YP_001667054.1| ATP-dependent transcription regulator LuxR [Pseudomonas putida GB-1] gi|166858311|gb|ABY96718.1| ATP-dependent transcriptional regulator, MalT-like, LuxR family [Pseudomonas putida GB-1] Length = 905 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 42/89 (47%) Query: 147 IEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVN 206 A +++ + + L+ RE + L+L G ++++I+E+L +S+HTV Sbjct: 817 AAACPVQAELLKHLPPVPTASTGTGEALSGRELAVLELIAQGCSNQQISERLFISLHTVK 876 Query: 207 AYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 + KL R QA+AKA G + Sbjct: 877 THASHINSKLGVERRTQAVAKAKTLGLLA 905 >gi|29834041|ref|NP_828675.1| two-component system response regulator [Streptomyces avermitilis MA-4680] gi|29611166|dbj|BAC75210.1| putative two-component system response regulator [Streptomyces avermitilis MA-4680] Length = 223 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 37/109 (33%), Positives = 48/109 (44%), Gaps = 3/109 (2%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 GYV L + + A G + + D L F +A LT RE S L LA Sbjct: 118 AGALGYVDKEGSPERLVSGIRRVAEGE--RFVDDSLG-FGFLKAAEMPLTRRELSVLSLA 174 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G + EIA L LS TV Y+ + T K A NRI AI + G++ Sbjct: 175 AGGASVAEIAGSLHLSHGTVRNYMSAITRKTGARNRIDAIRISQGEGWV 223 >gi|91776067|ref|YP_545823.1| two component LuxR family transcriptional regulator [Methylobacillus flagellatus KT] gi|91710054|gb|ABE49982.1| two component transcriptional regulator, LuxR family [Methylobacillus flagellatus KT] Length = 213 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 4/115 (3%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELF----KKRSSAARNLTERET 179 L GY+ S L + A G Y ++ + + L++RE Sbjct: 97 LNAGAMGYLTKRSAAEELIKAIHTVAGGKMYLEANVAQQMAIQQISGQQNPVDVLSDREF 156 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 G T+ EIA+ L LS TV +L + KL+A N + A+R G I Sbjct: 157 EVFMALAKGKTTNEIADILSLSPRTVGTHLYNIKQKLNASNSAEIALIAMRSGLI 211 >gi|55980999|ref|YP_144296.1| response regulator [Thermus thermophilus HB8] gi|55772412|dbj|BAD70853.1| response regulator [Thermus thermophilus HB8] Length = 192 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 11/109 (10%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLA 185 + Y+ L ++ G D LT RE L+L Sbjct: 94 AGADAYLSKELSAPELKRRLLRIRQGEERLTAPDI-----------PALTPREEEVLRLL 142 Query: 186 GDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++EIA L LS TV ++L S KL+A NR++A+++A G++ Sbjct: 143 AEGLSTKEIARALRLSPETVRSHLESLYAKLEARNRVEALSRARSLGFL 191 >gi|312962962|ref|ZP_07777448.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] gi|311282731|gb|EFQ61326.1| transcriptional regulator, LuxR family [Pseudomonas fluorescens WH6] Length = 833 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Query: 143 NEVIIEAHGACYQVITDFLELFKKRSSAA--RNLTERETSCLQLAGDGYTSEEIAEKLGL 200 + I E ++++ + ++ L++RE LQL G ++ +IA++L + Sbjct: 739 QQAIRELRLRAPGLLSELGMEPQASTAGVVENPLSQRELEVLQLIALGSSNLQIADRLFI 798 Query: 201 SVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 S+HTV + KL R QA+AKA G + Sbjct: 799 SLHTVKTHARRIHSKLGVERRTQAVAKAKTLGLMV 833 >gi|307328810|ref|ZP_07607980.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] gi|306885475|gb|EFN16491.1| two component transcriptional regulator, LuxR family [Streptomyces violaceusniger Tu 4113] Length = 214 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 9/119 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAAR------NL 174 L G+++ + LA+ V + A G ++ T L F + A + L Sbjct: 95 LQHGAAGFLLKDTSPRELADAVRVLARGEAMLSPRITTKLLAAFATGAVAPQARSRMAEL 154 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE G+++ +IA L +S TV +L KLDA NR Q G Sbjct: 155 TAREREVAVAVAQGHSNSQIATDLFVSQSTVKVHLSRIMTKLDAANRTQVALITHDAGL 213 >gi|111023879|ref|YP_706851.1| hypothetical protein RHA1_ro06927 [Rhodococcus jostii RHA1] gi|110823409|gb|ABG98693.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 530 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 44/114 (38%), Gaps = 4/114 (3%) Query: 121 PVRLGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETS 180 P RL G A ++A V+ + +R+ LT+RE Sbjct: 411 PHRLALDPRGA---ADRLKEEARTGRLDAESVA-AVLAAAGQRVSRRTPWPAGLTDREVE 466 Query: 181 CLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L G ++ EIA L ++ T ++ KL NR QA AI G + Sbjct: 467 ILRLVAQGRSNREIAADLFIAEKTARNHVERVYAKLGVNNRTQASLAAIDRGLV 520 >gi|297158191|gb|ADI07903.1| two-component system DNA-binding response regulator [Streptomyces bingchenggensis BCW-1] Length = 243 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 8/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGAC---YQVITDFLELFKKRSSAA-----RNLTERE 178 GYV T L + + + G ++ L+ F + LT+RE Sbjct: 128 GARGYVTKTITGTDLVDAIFRVSEGDAVFSPRLAGFVLDAFASTDAPPVDEDLDRLTQRE 187 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 L+L GY +EIA++L +SV TV +++ + KL NR + A + Sbjct: 188 REVLRLIARGYAYKEIAKQLFISVKTVESHVSAVLRKLQLSNRHELTRWATARRLV 243 >gi|312196796|ref|YP_004016857.1| LuxR family transcriptional regulator [Frankia sp. EuI1c] gi|311228132|gb|ADP80987.1| two component transcriptional regulator, LuxR family [Frankia sp. EuI1c] Length = 221 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 6/113 (5%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKKRSSAARNL---TERET 179 GYV+ L + V A G +V L ++ + L T++E Sbjct: 108 AGAAGYVLKQIRGAALVDAVRRVAAGQSLLDPEVTPRVLYRLRQGPAEDERLAGLTDQER 167 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 L L +G T+ +IA ++ L+ TV Y+ S KL +R QA A + G Sbjct: 168 RILALIAEGLTNRQIANRMYLAEKTVKNYVSSMLSKLGLESRTQAAVFATKLG 220 >gi|254786770|ref|YP_003074199.1| positive regulator AgmR [Teredinibacter turnerae T7901] gi|237687202|gb|ACR14466.1| positive regulator AgmR [Teredinibacter turnerae T7901] Length = 212 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 7/111 (6%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQ 183 L NG++ ++ + N + +G + + + +LT ++ + L+ Sbjct: 101 LDAGANGFIAKSTSKEEMKNAIQEILNG-------NIVVKSAQEDPGYIDLTTQQRATLR 153 Query: 184 LAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYI 234 +G +++EIA +LG+S T Y+ +LDA NR QA+ A R G + Sbjct: 154 YLAEGLSNKEIAIQLGVSPSTAKEYVSKVIERLDATNRTQAVLAAQREGLL 204 >gi|256422119|ref|YP_003122772.1| LuxR family transcriptional regulator [Chitinophaga pinensis DSM 2588] gi|256037027|gb|ACU60571.1| two component transcriptional regulator, LuxR family [Chitinophaga pinensis DSM 2588] Length = 222 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 6/110 (5%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY------QVITDFLELFKKRSSAARNLTER 177 L +GY++ + L + + G + + + + K + A LT R Sbjct: 109 LEAGASGYILKKTPPSELLSAIRDLHEGGSPMSSQIARRVVAYFQKQAKPNPALEALTSR 168 Query: 178 ETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 E L G+ +EIA L +S+ TV ++ + KL +R A+ K Sbjct: 169 EKEILDQLSKGFLYKEIASNLFISIETVRRHVHNIYEKLHVRSRTDAVNK 218 >gi|116254846|ref|YP_770682.1| putative two-component response regulator transcriptional regulatory protein [Rhizobium leguminosarum bv. viciae 3841] gi|19338425|emb|CAD19127.2| two-component response regulator [Rhizobium leguminosarum bv. viciae] gi|115259494|emb|CAK10632.1| two-component response transcriptional regulator of mctP [Rhizobium leguminosarum bv. viciae 3841] Length = 214 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 1/111 (0%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLELFKKR-SSAARNLTERETSCLQL 184 GY++ + + + A G Y F L +R + LT RE L L Sbjct: 101 HGAAGYILKDVSTDEIVSAIETVAGGGTYFSSGVFDALMGERVEEGSDPLTPRERDILGL 160 Query: 185 AGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 G +++EIAE LG++ T + + KL I A+ G + Sbjct: 161 IVAGRSNKEIAETLGITSATAETHRKNLKKKLGITTTAGLIRYALDHGIVS 211 >gi|296453955|ref|YP_003661098.1| LuxR family two component transcriptional regulator [Bifidobacterium longum subsp. longum JDM301] gi|296183386|gb|ADH00268.1| two component transcriptional regulator, LuxR family [Bifidobacterium longum subsp. longum JDM301] Length = 286 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 36/61 (59%) Query: 174 LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 LT+RE L G +++EIA+KL +S+ TV ++ K++A +R+QA+ A G Sbjct: 226 LTDREREVLVEIAHGLSNQEIADKLFISLPTVKTHVAHILAKINARDRVQAVVFAYDNGL 285 Query: 234 I 234 + Sbjct: 286 V 286 >gi|302552462|ref|ZP_07304804.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] gi|302470080|gb|EFL33173.1| two-component system response regulator [Streptomyces viridochromogenes DSM 40736] Length = 223 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 54/127 (42%), Gaps = 16/127 (12%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGAC-------YQVITDFLELFKKRSSAARN--- 173 L +G+++ ++ L + + A G +++ ++ S+A Sbjct: 94 LRAGASGFLVKDAQPEELLSGIRAVATGDAVVAPSLTRRLLDAYVHHLPTDSAAETPPQE 153 Query: 174 ------LTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAK 227 LT+RE L + G G+T+ EIA + L+ TV ++G K + +RIQA+ Sbjct: 154 DPRLASLTDREREILTVIGRGWTNTEIATRFHLAESTVKTHVGRILAKTGSRDRIQAVIL 213 Query: 228 AIRFGYI 234 A + Sbjct: 214 AYDTKLV 220 >gi|238789261|ref|ZP_04633048.1| Transcriptional activator protein echR [Yersinia frederiksenii ATCC 33641] gi|238722593|gb|EEQ14246.1| Transcriptional activator protein echR [Yersinia frederiksenii ATCC 33641] Length = 245 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 59/196 (30%), Gaps = 16/196 (8%) Query: 54 LHNYDLDSGDIPNILIETYGDDFLFHFNSGLLPIIWQSIQEETVIESSGQLSVRLEGGLL 113 + NY LD D + + P W + + +L Sbjct: 47 ISNYPLDWVKKYKKNSYHLIDPVILTAKDKVAPFAWDDNSVINKKSTDSAV-FKLAREYN 105 Query: 114 PFAGIAFPVRL----------GFHKNGYVIFTSEFLMLANEVIIEAHGACYQVITDFLEL 163 G F + + + F + ++ + +++ + Sbjct: 106 IVNGYTFVLHDNSNNMATLNISNGSDDSIYFDESIEINKEKIQMLLILTHEKMLGLYHNS 165 Query: 164 FKKRSSAARNL-----TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDA 218 +K S + + RE L A G T EI+ LG+ TV ++G+ KL Sbjct: 166 AEKNESGTNKIERDIFSPRENEILYWASVGKTYSEISIILGIKRSTVKFHIGNVVRKLGV 225 Query: 219 VNRIQAIAKAIRFGYI 234 +N AI I I Sbjct: 226 LNAKHAIRLGIELKLI 241 >gi|217969732|ref|YP_002354966.1| LuxR family transcriptional regulator [Thauera sp. MZ1T] gi|217507059|gb|ACK54070.1| two component transcriptional regulator, LuxR family [Thauera sp. MZ1T] Length = 226 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 7/116 (6%) Query: 127 HKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRSSAARNLTERET 179 GY++ + L + G Y ++ + L + AA LT R+T Sbjct: 99 GARGYLLKDAAVAELEMAIAAVMRGDVYLSPAVSRHLVGNMLARPPEDERAASVLTPRQT 158 Query: 180 SCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGYIC 235 L+L G G ++EIA +L LSV TV A+ +L + + +A R G I Sbjct: 159 EILELIGSGLGTKEIARRLDLSVKTVEAHRAQIMERLGVRDIANLLLEAARRGLIT 214 >gi|186474125|ref|YP_001861467.1| LuxR family transcriptional regulator [Burkholderia phymatum STM815] gi|184196457|gb|ACC74421.1| transcriptional regulator, LuxR family [Burkholderia phymatum STM815] Length = 361 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 38/77 (49%) Query: 157 ITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKL 216 + FL + LT RE ++L G + +IA +LGLS TV ++ + KL Sbjct: 280 VRAFLPPARHIDPVFSALTRREREIVELIAGGRDNAQIAARLGLSEKTVRNHITNIFAKL 339 Query: 217 DAVNRIQAIAKAIRFGY 233 + +R QAI A + G+ Sbjct: 340 EVESRAQAIVLARKAGF 356 >gi|91976037|ref|YP_568696.1| response regulator receiver [Rhodopseudomonas palustris BisB5] gi|91682493|gb|ABE38795.1| response regulator receiver [Rhodopseudomonas palustris BisB5] Length = 221 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 9/125 (7%) Query: 116 AGIAFPVR-LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELF-KK 166 G+ +R L +GYV+ S L + + G Y QVI+ + ++ Sbjct: 86 TGVDTAIRALDSGASGYVLKGSSPDELLDAIASVRSGETYITRNFATQVISALRDATIRR 145 Query: 167 RSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIA 226 R++ A L+ RE ++L G T++EIA + +S TV Y+ KL NR++ + Sbjct: 146 RAAMAVKLSIREEQIVRLLLKGKTNKEIAHAISISEKTVKHYMTILMQKLQVRNRLEVVI 205 Query: 227 KAIRF 231 A R Sbjct: 206 AAQRL 210 >gi|319942139|ref|ZP_08016457.1| two-component system response regulator NarL [Sutterella wadsworthensis 3_1_45B] gi|319804349|gb|EFW01233.1| two-component system response regulator NarL [Sutterella wadsworthensis 3_1_45B] Length = 226 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 51/138 (36%), Gaps = 6/138 (4%) Query: 100 SSGQLSVRLEGGLLPFAGIAFPVRLGFHKNGYVIFTSEFLMLANEVIIEAHG------AC 153 S R+ + +G F + +GY + E + V G A Sbjct: 81 KERDPSQRVVILTVSDSGEDFFSCIRAGADGYFLKDMEPEKVLYCVRESLEGRLTVDPAM 140 Query: 154 YQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSAT 213 + +TD L + +LT+RE L G T++ I +L +S TV ++ Sbjct: 141 VRYLTDLLRGKAPKVEETVSLTDREEDVLSCIARGMTNKMIGRELKISDGTVKGHVKHLL 200 Query: 214 VKLDAVNRIQAIAKAIRF 231 KL +R++A A Sbjct: 201 KKLGFNSRVEAAVWAAER 218 >gi|283781707|ref|YP_003372462.1| two component LuxR family transcriptional regulator [Pirellula staleyi DSM 6068] gi|283440160|gb|ADB18602.1| two component transcriptional regulator, LuxR family [Pirellula staleyi DSM 6068] Length = 211 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 6/115 (5%) Query: 125 GFHKNGYVIFTSEFLMLANEVIIE------AHGACYQVITDFLELFKKRSSAARNLTERE 178 G++ L + + ++ L + LT+RE Sbjct: 96 ALGAAGFIPKGMPREDLIAALETAGNKQTLWKRDQLRRVSSALAAARIDQQIEAPLTQRE 155 Query: 179 TSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 L+ G T+++IAE LG+S TV ++ K+ +R QA A+R G Sbjct: 156 GEVLKHVCSGRTNQQIAELLGISYETVKEHVQHLLEKIGVADRTQAAIWAVRAGL 210 >gi|326793450|ref|YP_004311270.1| LuxR family transcriptional regulator [Marinomonas mediterranea MMB-1] gi|326544214|gb|ADZ89434.1| two component transcriptional regulator, LuxR family [Marinomonas mediterranea MMB-1] Length = 306 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 34/62 (54%) Query: 169 SAARNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKA 228 + NLT+RE+ L+ +G T+ EIAE L +S TVN +L KL NR A A Sbjct: 240 KSELNLTDRESEVLRWIANGKTNREIAEILEMSPRTVNKHLEQIFPKLGVENRTAAAGVA 299 Query: 229 IR 230 +R Sbjct: 300 LR 301 >gi|297191953|ref|ZP_06909351.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] gi|297151144|gb|EFH30977.1| two component system response regulator [Streptomyces pristinaespiralis ATCC 25486] Length = 232 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 11/123 (8%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY---QVITDFLELFKK--------RSSAAR 172 LG +G+++ + + L V A GA ++ L+ +A Sbjct: 107 LGAGVSGFLLKSGDPRELIAGVRAAAEGAACLSPEIARRVLDRLGAGRMSRAAEARAALE 166 Query: 173 NLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFG 232 LT RE + L G G ++ EIA +L + TV A++ + +L+ NR+Q A G Sbjct: 167 PLTGREREVVALVGAGLSNAEIAARLFVVEGTVKAHVSAVLARLELRNRVQLAILAYEAG 226 Query: 233 YIC 235 + Sbjct: 227 VVA 229 >gi|302539397|ref|ZP_07291739.1| two component transcriptional regulator [Streptomyces sp. C] gi|302448292|gb|EFL20108.1| two component transcriptional regulator [Streptomyces sp. C] Length = 220 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 9/116 (7%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHGACY-------QVITDFLELFKKRS--SAARNL 174 L G+++ + +LA V + G +++ F +L R + Sbjct: 97 LRAGARGFLLKDTGPDLLAQAVRSASDGEALIAPSVTVRLLRAFADLPAGRPVAQPVSPV 156 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 T RE L G T+ EIA+ L +S+ TV +L S KL A NR++ A Sbjct: 157 TAREEQVLLAVARGLTNTEIADALRISLSTVKTHLASLMAKLGARNRVEIAMWAYE 212 >gi|239944305|ref|ZP_04696242.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 15998] gi|239990759|ref|ZP_04711423.1| putative two-component system response regulator [Streptomyces roseosporus NRRL 11379] gi|291447772|ref|ZP_06587162.1| response regulator [Streptomyces roseosporus NRRL 15998] gi|291350719|gb|EFE77623.1| response regulator [Streptomyces roseosporus NRRL 15998] Length = 216 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 50/123 (40%), Gaps = 13/123 (10%) Query: 124 LGFHKNGYVIFTSEFLMLANEVIIEAHG-------ACYQVITDFLELFKKRSSAA----- 171 L +G+++ ++ L V A G ++I +F R+ Sbjct: 94 LRAGASGFLLKNTDARELLEAVRTVARGEGLIAPAVTRRLIAEFAGTTPVRTRETADPVV 153 Query: 172 -RNLTERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIR 230 LT RE L G+G ++ EIA +L ++ TV ++ KL+ +R+QA A Sbjct: 154 LDTLTRREREVLGCLGEGLSNAEIAARLSMAEATVKTHVSRLLGKLELRSRVQAAVLAQE 213 Query: 231 FGY 233 G Sbjct: 214 LGI 216 >gi|237653295|ref|YP_002889609.1| LuxR family transcriptional regulator [Thauera sp. MZ1T] gi|237624542|gb|ACR01232.1| two component transcriptional regulator, LuxR family [Thauera sp. MZ1T] Length = 243 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 39/101 (38%) Query: 133 IFTSEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSE 192 + + + + A + + L+ RE L+ G +++ Sbjct: 137 LLSGVRSSASRAAMGGAIAPAPGALARSAPAAGAEPAELEKLSPREREILRFIARGQSNK 196 Query: 193 EIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 EIA L L+ TV ++ + KL+ +R+QA A+ G Sbjct: 197 EIARALELAESTVKIHVQNMLRKLNLSSRVQAAVFAVENGL 237 >gi|159037739|ref|YP_001536992.1| two component LuxR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157916574|gb|ABV98001.1| two component transcriptional regulator, LuxR family [Salinispora arenicola CNS-205] Length = 240 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 11/119 (9%) Query: 126 FHKNGYVIFTSEFLMLANEVIIEAHGAC------YQVITDFLELFKKR-----SSAARNL 174 NG + + L V A G + + D+L + A NL Sbjct: 99 AGANGVLAEDASKAELLIAVRAVASGHAMLGPPVARRMLDWLRSSDDPVGVPYPAVANNL 158 Query: 175 TERETSCLQLAGDGYTSEEIAEKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 T RE L L G +++EIA +L +SV TV +L KL +R Q + A + G Sbjct: 159 TGREREILLLTARGLSADEIAGRLFISVATVRTHLYRLRCKLQLKDRAQLVTFAYQTGL 217 >gi|78185167|ref|YP_377602.1| LuxR family transcriptional regulator [Synechococcus sp. CC9902] gi|78169461|gb|ABB26558.1| transcriptional regulator, LuxR family [Synechococcus sp. CC9902] Length = 227 Score = 90.0 bits (222), Expect = 2e-16, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 46/98 (46%) Query: 136 SEFLMLANEVIIEAHGACYQVITDFLELFKKRSSAARNLTERETSCLQLAGDGYTSEEIA 195 S + A+G+ Y +S A L++RE+ L+ G +++E+A Sbjct: 130 SADGDFLKSIRAIANGSSYYPKEVRTMAGYVKSIALAGLSDRESEVLEALCQGMSNKEMA 189 Query: 196 EKLGLSVHTVNAYLGSATVKLDAVNRIQAIAKAIRFGY 233 E L +S T+ +++ + KL +R QA+ AIR G Sbjct: 190 EVLFVSPETIKSHVSTVIGKLGVKDRTQAVISAIRAGM 227 >gi|297156704|gb|ADI06416.