HHsearch alignment for GI: 254780694 and conserved domain: COG0568

>COG0568 RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription].

Probab=95.49  E-value=0.038  Score=32.67  Aligned_cols=51  Identities=35%  Similarity=0.426  Sum_probs=43.6

Q ss_pred             CCHHHHHHHHH---H--HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC-CCCHHHH
Q ss_conf             89779999999---9--85999799999949998899999999999807-9988999
Q gi|254780694|r  186 LTGREVECLTW---I--SEGKTSDEIAVILGISRNTVNNYIASIMRKTA-TKTRSGA  236 (246)
Q Consensus       186 LT~RE~eVl~l---i--a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg-v~~R~ea  236 (246)
T Consensus       280 Lt~rE~~Vi~~R~gl~~~~~~TLeevg~~~~vsrERvRQIE~kAl~KLr~~~~~~~~  336 (342)
T COG0568         280 LTERERRVIRLRFGLDDGEPKTLEELGEEFGISRERVRQIEAKALRKLRRHPERSAL  336 (342)
T ss_pred             CCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999556799955199999895986999999999999999870632227