HHsearch alignment for GI: 254780694 and conserved domain: COG1342

>COG1342 Predicted DNA-binding proteins [General function prediction only].

Probab=92.29  E-value=0.38  Score=26.25  Aligned_cols=47  Identities=36%  Similarity=0.454  Sum_probs=43.0

Q ss_pred             CCCCCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             88888977999999998-599979999994999889999999999980
Q gi|254780694|r  182 KDFELTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMRKT  228 (246)
Q Consensus       182 ~~~~LT~RE~eVl~lia-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KL  228 (246)
T Consensus        30 ~~V~lt~eElEAlRLvD~~~l~QeeAA~rMgISr~Tfwr~l~sAR~Kv   77 (99)
T COG1342          30 EPVILTIEELEALRLVDYEGLTQEEAALRMGISRQTFWRLLTSARKKV   77 (99)
T ss_pred             CCEEECHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             643522999889998868610578999984642999999999999999