HHsearch alignment for GI: 254780694 and conserved domain: COG1595

>COG1595 RpoE DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription].

Probab=97.77  E-value=7.3e-05  Score=50.10  Aligned_cols=47  Identities=34%  Similarity=0.367  Sum_probs=42.3

Q ss_pred             CCCCHHHHHHHHHHH-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf             888977999999998-59997999999499988999999999998079
Q gi|254780694|r  184 FELTGREVECLTWIS-EGKTSDEIAVILGISRNTVNNYIASIMRKTAT  230 (246)
Q Consensus       184 ~~LT~RE~eVl~lia-~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv  230 (246)
T Consensus       126 ~~Lp~~~R~~~~l~~~~gls~~EIA~~l~i~~~tVks~l~ra~~~l~~  173 (182)
T COG1595         126 ARLPPRQREAFLLRYLEGLSYEEIAEILGISVGTVKSRLHRARKKLRE  173 (182)
T ss_pred             HCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             839999999999999859999999989599999999999999999999