HHsearch alignment for GI: 254780694 and conserved domain: COG4566
>COG4566 TtrR Response regulator [Signal transduction mechanisms].
Probab=99.73 E-value=1.2e-16 Score=125.78 Aligned_cols=185 Identities=17% Similarity=0.094 Sum_probs=120.4
Q ss_pred HCCCHHHHHHHHHHHHHHHCCCEEEEECCC---------CCCCCCCCEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 327999999999999987193023000266---------63111232100068958999999966984517389999852
Q gi|254780694|r 38 PLDCTVSWTMRMYALTEYVGASHFLLVRWD---------LFQEQKLDSIVSSDWPFDLVRCMALSEKDKYYNVLQRPTEL 108 (246)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 108 (246)
T Consensus 9 vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~--~~PV------I 80 (202)
T COG4566 9 VVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGI--RLPV------I 80 (202)
T ss_pred EECCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCC--CCCE------E
T ss_conf 9768488999999999838953665047999983066788976998557888850899999995399--9887------9
Q ss_pred HHHHHCCCHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCH
Q ss_conf 32443032543333214457147503373689999999717875469899999999999999754201467798888897
Q gi|254780694|r 109 FCPVFHTLPENITPPAGMDNRYCSLTFDVARIRIGLMLLFPKGRIILRDRLWEIGLLAAYQANMFKSYDVHWGKDFELTG 188 (246)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~ 188 (246)
T Consensus 81 fiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~~~~~~~~~-----~~~----------~~~l~tLT~ 145 (202)
T COG4566 81 FLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDASRRAEADRQ-----AAI----------RARLATLTP 145 (202)
T ss_pred EEECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH----------HHHHHHCCH
T ss_conf 98278872899999974215677478854899999999999888888767789-----999----------999986698
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC
Q ss_conf 799999999859997999999499988999999999998079988999999997589
Q gi|254780694|r 189 REVECLTWISEGKTSDEIAVILGISRNTVNNYIASIMRKTATKTRSGAIAYAVRNNI 245 (246)
Q Consensus 189 RE~eVl~lia~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLgv~~R~eav~~A~~~Gl 245 (246)
T Consensus 146 RERqVl~~vV~G~~NKqIA~dLgiS~rTVe~HRanvM~Km~a~SlaeLvr~a~~~~~ 202 (202)
T COG4566 146 RERQVLDLVVRGLMNKQIAFDLGISERTVELHRANVMEKMQARSLAELVRMALSLGL 202 (202)
T ss_pred HHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
T ss_conf 899999999837630899998398664599999999999733319999999985459