HHsearch alignment for GI: 254780694 and conserved domain: PRK05572
>PRK05572 sporulation sigma factor SigF; Validated.
Probab=97.14 E-value=0.0013 Score=42.00 Aligned_cols=46 Identities=30% Similarity=0.302 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHH-HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHC
Q ss_conf 88897799999999-85999799999949998899999999999807
Q gi|254780694|r 184 FELTGREVECLTWI-SEGKTSDEIAVILGISRNTVNNYIASIMRKTA 229 (246)
Q Consensus 184 ~~LT~RE~eVl~li-a~G~t~~eIA~~L~iS~~TV~~hl~~i~~KLg 229 (246)
T Consensus 200 ~~L~~rEr~Vi~~ry~~~~tl~EIa~~lgiS~eRVrQI~~~Al~kLR 246 (251)
T PRK05572 200 RELDERERLIIYLRYFKDKTQSEVAKRLGISQVQVSRLEKKILKQMK 246 (251)
T ss_pred HCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_conf 72899999999998178988999999979799999999999999999